Citrus Sinensis ID: 025775

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
MSVLPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNR
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEEccccccHHHHHHccccEEEEEEccHHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHcccccEEEEccccccccccHHHHHHHHHHHHHccccccEEEEEEccHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEcccccccccccEEEEEEEEccccccccccccHHHHHHHHHHcccEEEEEcccHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEcccccHHHHHHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHccccEEEEEccHHHHHHHHHHHHHHHHccccEEEEEcccccccHHHHcccccccccEEEHHHHHHHHcccHHHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHHccHHHccccccccccccccccccEEEEEEccccccccccccEEEEEHHHHHcccccEEEcHHHHHHHHHHcccEEEEEccHHHHHHHcc
Coil and Loop (DISEMBL)
msvlpiprselthhRLYEFAKTALIKiyshpyvtvcdlycgagvdvdKWETALIANYIgidvatsgigearDTWENQRKNFIAEffeadpcaenFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSllkpggyflgitpdsSTIWAKYQKNVEAyhnrsssmkpnlvpncirsesyvITFEveeekfplfgkKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLnefyddnr
Flexible Loop (DISEMBL)
msvlpiprseltHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHnrsssmkpnlvpncIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEiqnlnefyddnr
Low Complexity Region (SEG)
MSVLPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNR
Disordered region (IsUnstruct)
**********LTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHN*******NLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFY****
Disordered Region (DISOPRED)
********SELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDN*
Disordered Region (DISEMBL)
MSVLPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNR
Disordered Region (DISPRO)
*SVLPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVE**************PNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVLPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	248	2.2.26 [Sep-21-2011]
Q5HZ60	354	mRNA cap guanine-N7 methy	yes	no	0.991	0.694	0.693	1e-102
Q6K833	339	mRNA cap guanine-N7 methy	yes	no	0.935	0.684	0.716	1e-99
Q6Z9U7	369	mRNA cap guanine-N7 methy	no	no	0.850	0.571	0.322	1e-22
Q9VJQ4	427	mRNA cap guanine-N7 methy	yes	no	0.810	0.470	0.290	3e-22
Q9LHQ7	370	mRNA cap guanine-N7 methy	no	no	0.850	0.570	0.316	3e-20
Q1MTD3	400	mRNA cap guanine-N7 methy	yes	no	0.794	0.492	0.271	5e-19
Q9I8S2	402	mRNA cap guanine-N7 methy	N/A	no	0.794	0.490	0.272	4e-18
P32783	436	mRNA cap guanine-N7 methy	yes	no	0.870	0.495	0.311	1e-17
Q28FT4	405	mRNA cap guanine-N7 methy	yes	no	0.794	0.486	0.268	2e-17
Q6CKI0	426	mRNA cap guanine-N7 methy	yes	no	0.858	0.5	0.324	2e-17

>sp|Q5HZ60|MCES2_ARATH mRNA cap guanine-N7 methyltransferase 2 OS=Arabidopsis thaliana GN=At3g52210 PE=2 SV=1

 Score =  372 bits (954), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 172/248 (69%), Positives = 206/248 (83%), Gaps = 2/248 (0%)

Query: 1   MSVLPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGI 60
           MS   + + E +HHRL++FAKTA+I I++HPY TVC+LYCG   + DKWE A I +YIGI
Sbjct: 1   MSGFVVSKPEQSHHRLFDFAKTAIINIFAHPYATVCELYCGGAPETDKWEAAPIGHYIGI 60

Query: 61  DVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFE 120
           D  +SGI   R+ WE+QRKN+  EFFEADP  ++FE Q+Q+K  QADLV C++HLQ+CFE
Sbjct: 61  DT-SSGISSVREAWESQRKNYDVEFFEADPSKDDFEIQLQKKLEQADLVSCWRHLQLCFE 119

Query: 121 TEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIR 180
           TEE ARRLL NV+ LLKPGGYF GITPDSSTIWAKYQKNVEAYHNRS + KPN+ PN IR
Sbjct: 120 TEESARRLLTNVACLLKPGGYFFGITPDSSTIWAKYQKNVEAYHNRSGA-KPNVFPNYIR 178

Query: 181 SESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL 240
           SESY+ITFE+EEEKFPLFGK+YQLKF+ D ++E  CLVHFPSLIRLAREAGLE+VEIQ+L
Sbjct: 179 SESYMITFELEEEKFPLFGKRYQLKFSGDNASEDHCLVHFPSLIRLAREAGLEFVEIQSL 238

Query: 241 NEFYDDNR 248
            +FYDDNR
Sbjct: 239 TDFYDDNR 246

mRNA capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 5EC: 6

>sp|Q6K833|MCES2_ORYSJ mRNA cap guanine-N7 methyltransferase 2 OS=Oryza sativa subsp. japonica GN=Os02g0780600 PE=2 SV=1

 Score =  362 bits (930), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 169/236 (71%), Positives = 192/236 (81%), Gaps = 4/236 (1%)

Query: 13  HHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARD 72
           HHRLYEFAKTALIKI++ PY TVCDLYC  GVD DKW  A I +YIGID + SG+ +AR+
Sbjct: 6   HHRLYEFAKTALIKIFAFPYATVCDLYCDGGVDTDKWGDAQIGHYIGIDASASGVNDARE 65

Query: 73  TWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNV 132
            WE+++K F +EF E DP A++FE QMQEK  QAD+VCC QHLQ+CFE+EE A++LL NV
Sbjct: 66  LWESRKKLFTSEFIELDPSADDFEAQMQEKGIQADIVCCMQHLQLCFESEEHAQKLLNNV 125

Query: 133 SSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEE 192
           SSLLKPGGYF+GI PDSSTIW KYQKNVEA HN+        VPN IRSE+YVITFEVEE
Sbjct: 126 SSLLKPGGYFVGIIPDSSTIWTKYQKNVEASHNKGLKT----VPNSIRSENYVITFEVEE 181

Query: 193 EKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNR 248
           EKFP FGKKYQLKFAN+   E  CLVHFPS +RLAREAGLEYVEIQNL EFYDDNR
Sbjct: 182 EKFPFFGKKYQLKFANESMFENHCLVHFPSFMRLAREAGLEYVEIQNLTEFYDDNR 237

mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|Q6Z9U7|MCES1_ORYSJ mRNA cap guanine-N7 methyltransferase 1 OS=Oryza sativa subsp. japonica GN=Os08g0180000 PE=2 SV=1

 Score =  106 bits (265), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/242 (32%), Positives = 121/242 (50%), Gaps = 31/242 (12%)

Query: 15  RLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEAR--- 71
           +L  + K+ LI++Y+HP   V DL CG G D+ KW+ A +  Y+G+D+A   I +     
Sbjct: 68  KLNNWIKSVLIQLYAHPGDCVLDLACGKGGDLIKWDKAKVGYYVGVDIAEGSIKDCMTRY 127

Query: 72  --DTWENQRKNFIAEFFEADPCAENFETQMQEKANQA---DLVCCFQHLQMCFETEERAR 126
             DT + +RK F   F     CA+ +E ++ E   +    D+  C   L   + TE RAR
Sbjct: 128 NGDTDQQRRKKF--SFPARLICADCYEARLDEHLYEDAPFDICSCQFALHYSWSTEARAR 185

Query: 127 RLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVI 186
           + L NVS+LL+PGG F+G  PD++ I  + ++        +  M+         +  Y I
Sbjct: 186 QALANVSALLRPGGVFIGTMPDANVIIKRLRE--------TDGME-------FGNGVYWI 230

Query: 187 TF--EVEEEKFPL---FGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLN 241
           +F  E  E+KFP    FG KY+    + +    + +V F     LA E  LE V  +N +
Sbjct: 231 SFGEEYAEKKFPASRPFGIKYKFHLEDAVDC-PEWVVPFHLFKLLAEEYDLELVLTKNFH 289

Query: 242 EF 243
           EF
Sbjct: 290 EF 291

mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|Q9VJQ4|MCES_DROME mRNA cap guanine-N7 methyltransferase OS=Drosophila melanogaster GN=l(2)35Bd PE=1 SV=2

 Score =  105 bits (262), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 109/224 (48%), Gaps = 23/224 (10%)

Query: 33  VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN--QRK-------NFIA 83
           + V D+ CG G D+ KWE A I++ I  D+A   + + +  +++  QR         F A
Sbjct: 137 LRVLDMCCGKGGDLLKWEKAAISHLICTDIAEVSVEQCQRRYQDILQRSEKSKFANKFTA 196

Query: 84  EFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143
           EFF  D        + ++ + Q +LV C      CFE+  +A  +++N +  LKPGG+F+
Sbjct: 197 EFFACDSTLVRLRERYKDPSLQLNLVSCQFAFHYCFESMAQADCMMRNAAECLKPGGFFI 256

Query: 144 GITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQ 203
              PD+  I  +          R++        N +    Y I F+ E +  PLFG KYQ
Sbjct: 257 ATMPDAYEIIRRL---------RAAGPDARRFGNDV----YSIEFDCETDPLPLFGAKYQ 303

Query: 204 LKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDN 247
                 +    + LVHFP+L++L R+ GL+ ++     ++Y +N
Sbjct: 304 FHLEGVVDC-PEFLVHFPTLVKLGRKYGLQLLKRSTFADYYKEN 346

mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|Q9LHQ7|MCES1_ARATH mRNA cap guanine-N7 methyltransferase 1 OS=Arabidopsis thaliana GN=At3g20650 PE=2 SV=1

 Score = 98.6 bits (244), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 114/243 (46%), Gaps = 32/243 (13%)

Query: 15  RLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTW 74
           +L  + K+ LI++Y+ P   V DL CG G D+ KW+ A I  Y+GID+A   I + R  +
Sbjct: 68  KLNNWIKSVLIQLYARPDDAVLDLACGKGGDLIKWDKARIGYYVGIDIAEGSIEDCRTRY 127

Query: 75  EN------QRKNFIAEFFEADPCAENFETQMQ---EKANQADLVCCFQHLQMCFETEERA 125
                   +RK F   F     C + FE ++    E+    D+  C   +   + TE RA
Sbjct: 128 NGDADHHQRRKKF--SFPSRLLCGDCFEVELDKILEEDAPFDICSCQFAMHYSWTTEARA 185

Query: 126 RRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYV 185
           RR L NVS+LL+PGG F+G  PD++ I  K  +  E                 I +  Y 
Sbjct: 186 RRALANVSALLRPGGVFIGTMPDANVIIKKL-REAEGLE--------------IGNSVYW 230

Query: 186 ITF--EVEEEKFPL---FGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL 240
           I F  E  ++KF     FG +Y     + +    + +V F     LA E  LE V ++N 
Sbjct: 231 IRFGEEYSQKKFKSSSPFGIEYVFHLEDAVDC-PEWIVPFNVFKSLAEEYDLELVFVKNS 289

Query: 241 NEF 243
           +EF
Sbjct: 290 HEF 292

mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|Q1MTD3|MCES_DANRE mRNA cap guanine-N7 methyltransferase OS=Danio rerio GN=rnmt PE=2 SV=1

 Score = 94.7 bits (234), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 106/221 (47%), Gaps = 24/221 (10%)

Query: 33  VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK-------NFIAEF 85
           VTV DL CG G D+ KW+   I   +  D+A   I + +  + + R+        F AEF
Sbjct: 122 VTVLDLGCGKGGDLLKWKKGRIDKLVCADIAAVSIEQCQQRYNDVRRRGHPNDRTFSAEF 181

Query: 86  FEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145
             AD   E    ++Q+   Q D+  C       FE+E +A  +L+N    L+PGG+F+G 
Sbjct: 182 ITADCSRELLSEKLQDPELQFDVCSCQFVYHYSFESESQADTMLRNACERLRPGGFFIGT 241

Query: 146 TPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLK 205
           TPD+  +  + +++                 N   +E + +TF+ + E +PLFG +Y   
Sbjct: 242 TPDAYELVKRLEESDS---------------NSFGNEVFSVTFQKKGE-YPLFGCQYDFS 285

Query: 206 FANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDD 246
               ++   + LV+FP  + +A++  +  V  +   EF+++
Sbjct: 286 LEGVVNV-PEFLVYFPLFVEMAKKYNMRLVYKKTFKEFFEE 325

mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|Q9I8S2|MCES_XENLA mRNA cap guanine-N7 methyltransferase OS=Xenopus laevis GN=rnmt PE=2 SV=1

 Score = 91.7 bits (226), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 105/220 (47%), Gaps = 23/220 (10%)

Query: 33  VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN------FIAEFF 86
           +TV DL CG G D+ KW    I+  +  D+A   + +    +++ ++       F AEF 
Sbjct: 125 ITVLDLGCGKGGDLLKWRKGGISKLVCTDIADVSVKQCEQRYKDMKRKSRNERIFEAEFL 184

Query: 87  EADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146
            +D   E    +  +   + D+  C       FET E+A  +L+N    L PGG+F+G T
Sbjct: 185 TSDSTKELLSEKYIDPEIKFDICSCQFVYHYSFETYEQADTMLRNACERLCPGGFFIGTT 244

Query: 147 PDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKF 206
           PD   +     K +EA              N   ++ Y +TFE ++ K+PLFG KY    
Sbjct: 245 PDGFELV----KRLEASDT-----------NSFGNDVYTVTFE-KKGKYPLFGCKYDFSL 288

Query: 207 ANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDD 246
              ++   + LV+FP L+ +A++  ++ +  +   EF+++
Sbjct: 289 EEVVNV-PEFLVYFPVLVEMAKKYQMKLIYKKTFREFFEE 327

mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|P32783|MCES_YEAST mRNA cap guanine-N7 methyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ABD1 PE=1 SV=1

 Score = 90.5 bits (223), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 104/231 (45%), Gaps = 15/231 (6%)

Query: 21  KTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK- 79
           K  LI  Y+ P   V +L CG G D+ K+  A I+ +IGID++ + I EA   + + R  
Sbjct: 154 KYMLIDKYTKPGDVVLELGCGKGGDLRKYGAAGISQFIGIDISNASIQEAHKRYRSMRNL 213

Query: 80  NFIAEFFEADPCAENFETQMQEKAN---QADLVCCFQHLQMCFETEERARRLLQNVSSLL 136
           ++       D   E+    ++   +     D+V     L   FETEE+ARR L NV+  L
Sbjct: 214 DYQVVLITGDCFGESLGVAVEPFPDCRFPCDIVSTQFCLHYAFETEEKARRALLNVAKSL 273

Query: 137 KPGGYFLGITPDSSTI---WAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEE 193
           K GG+F G  PDS  I     K+ K VE     +S  K     N  +   Y  T      
Sbjct: 274 KIGGHFFGTIPDSEFIRYKLNKFPKEVEKPSWGNSIYKVTFENNSYQKNDYEFT------ 327

Query: 194 KFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFY 244
               +G+ Y     + I    + +V F +L  LA E GLE V     N+F+
Sbjct: 328 --SPYGQMYTYWLEDAIDNVPEYVVPFETLRSLADEYGLELVSQMPFNKFF 376

Responsible for methylating the 5'-cap structure of mRNAs.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|Q28FT4|MCES_XENTR mRNA cap guanine-N7 methyltransferase OS=Xenopus tropicalis GN=rnmt PE=2 SV=1

 Score = 89.7 bits (221), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 104/220 (47%), Gaps = 23/220 (10%)

Query: 33  VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN------FIAEFF 86
           + V DL CG G D+ KW    I+  +  D+A   + +  + +++ ++       F AEF 
Sbjct: 128 IAVLDLGCGKGGDLLKWRKGGISKLVCTDIADVSVKQCEERYKDLKRKSRNERVFEAEFL 187

Query: 87  EADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146
            AD   E    +  +   + D+  C       FET E+A  +L+N    L PGG+F+G T
Sbjct: 188 TADSTKELLSEKYNDPEIKFDICSCQFVYHYSFETYEQADMMLRNACERLCPGGFFIGTT 247

Query: 147 PDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKF 206
           PD   +     K +EA              N   ++ Y + FE ++ K+PLFG KY    
Sbjct: 248 PDGFELV----KRLEASDT-----------NSFGNDVYTVKFE-KKGKYPLFGCKYDFSL 291

Query: 207 ANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDD 246
              ++   + LV+FP L+ +A++  ++ +  +   EF+++
Sbjct: 292 EEVVNV-PEFLVYFPVLVEMAKKYQMKLIYKKTFREFFEE 330

mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.

Xenopus tropicalis (taxid: 8364)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|Q6CKI0|MCES_KLULA mRNA cap guanine-N7 methyltransferase OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=ABD1 PE=3 SV=1

 Score = 89.4 bits (220), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 107/234 (45%), Gaps = 21/234 (8%)

Query: 21  KTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK- 79
           K  LI  ++     V +L CG G D+ K+  A I+ +IGID++ + I EA   + + +  
Sbjct: 151 KYILIDKFTRAGDVVLELACGKGGDLRKYGAAGISQFIGIDISNASITEALKRYHSMKNL 210

Query: 80  NFIAEFFEADPCAENFETQMQ---EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLL 136
            +       D   E+    ++   E     D+V C   L   FETEE+ARR+L NV   L
Sbjct: 211 EYQVILITGDCFGESLGVAVESFPECRFPCDIVSCQFALHYAFETEEKARRMLLNVVKSL 270

Query: 137 KPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEE---- 192
           K GGYF G  PDS  I  K  K  E      S  KP+   N I    Y +TF   E    
Sbjct: 271 KIGGYFFGTIPDSEFIRYKMNKIPE------SVEKPSW-GNSI----YKVTFSNNEYQKN 319

Query: 193 -EKFPL-FGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFY 244
             +FP  FG+ Y     + I    + ++ F S   LA E G+E    +  NEF+
Sbjct: 320 GNEFPSPFGQMYTFWLEDAIDNVPEYVIPFESFRSLADEYGMELELQKGFNEFF 373

Responsible for methylating the 5'-cap structure of mRNAs.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
224109904	287	predicted protein [Populus trichocarpa]	1.0	0.864	0.814	1e-123
449449401	354	PREDICTED: mRNA cap guanine-N7 methyltra	1.0	0.700	0.770	1e-114
225449657	359	PREDICTED: mRNA cap guanine-N7 methyltra	1.0	0.690	0.742	1e-110
296090379	319	unnamed protein product [Vitis vinifera]	1.0	0.777	0.742	1e-110
356516035	346	PREDICTED: mRNA cap guanine-N7 methyltra	0.963	0.690	0.766	1e-109
356507590	359	PREDICTED: mRNA cap guanine-N7 methyltra	0.963	0.665	0.762	1e-108
255586607	258	mRNA (guanine-7-)methyltransferase, puta	0.891	0.856	0.786	1e-106
357463871	359	mRNA cap guanine-N7 methyltransferase [M	0.951	0.657	0.742	1e-103
79314795	355	mRNA cap guanine-N7 methyltransferase 2	0.995	0.695	0.689	1e-101
42565855	354	mRNA cap guanine-N7 methyltransferase 2	0.991	0.694	0.693	1e-101

>gi|224109904|ref|XP_002315350.1| predicted protein [Populus trichocarpa] gi|222864390|gb|EEF01521.1| predicted protein [Populus trichocarpa]

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 202/248 (81%), Positives = 228/248 (91%)

Query: 1   MSVLPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGI 60
           MS  PIPR+E  HHRLYEFAK+A+IKI++HPY TVCDLYCG GVD++KW+ A I +YIGI
Sbjct: 1   MSGFPIPRTESAHHRLYEFAKSAIIKIFAHPYATVCDLYCGGGVDIEKWDAAQITHYIGI 60

Query: 61  DVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFE 120
           DVA+SGI E ++TWE+ +KN+ A+FF+ADPC+ENFETQ+QEKANQADLVCC Q+LQ+CFE
Sbjct: 61  DVASSGISEVKETWESLKKNYTADFFQADPCSENFETQLQEKANQADLVCCLQNLQLCFE 120

Query: 121 TEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIR 180
           TEE AR+LL NV+SLLKPGGYF GITPDSSTIWAKYQKNVEAYHNRS SMKPN+VPNCIR
Sbjct: 121 TEESARKLLHNVASLLKPGGYFFGITPDSSTIWAKYQKNVEAYHNRSGSMKPNIVPNCIR 180

Query: 181 SESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL 240
           SESY+ITFEVEEEKFPLFGKKYQLKFA+DISAET CLVHFPSLIRLAREAGLEYVEIQNL
Sbjct: 181 SESYMITFEVEEEKFPLFGKKYQLKFAHDISAETHCLVHFPSLIRLAREAGLEYVEIQNL 240

Query: 241 NEFYDDNR 248
            EFYDDNR
Sbjct: 241 TEFYDDNR 248

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449401|ref|XP_004142453.1| PREDICTED: mRNA cap guanine-N7 methyltransferase 2-like [Cucumis sativus] gi|449513235|ref|XP_004164269.1| PREDICTED: mRNA cap guanine-N7 methyltransferase 2-like [Cucumis sativus]

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 191/248 (77%), Positives = 214/248 (86%)

Query: 1   MSVLPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGI 60
           MS L  PR E THHRL +FAKTALIKI+SHPYVTVCDLYC  G D +KW+   I++YIGI
Sbjct: 1   MSQLVPPRGEWTHHRLCDFAKTALIKIFSHPYVTVCDLYCARGADAEKWDETQISHYIGI 60

Query: 61  DVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFE 120
           D +TSGIG+ R+ WE+Q+K + AEFFE DPC EN ETQ+++K    D VCC QHLQMCFE
Sbjct: 61  DESTSGIGQMREAWESQKKAYTAEFFEVDPCVENIETQLKDKTETVDRVCCLQHLQMCFE 120

Query: 121 TEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIR 180
           TEERARRLL NVS+LLKPGGYF GITPDSSTIWAKYQKNVEAYHNRS+ MKPN+VPNCIR
Sbjct: 121 TEERARRLLHNVSALLKPGGYFFGITPDSSTIWAKYQKNVEAYHNRSAGMKPNIVPNCIR 180

Query: 181 SESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL 240
           SESY+I+FEVEEEKFPLFGKKYQLKFAND SAET CLVHFPS IRLAREAGLEY+EIQNL
Sbjct: 181 SESYMISFEVEEEKFPLFGKKYQLKFANDPSAETHCLVHFPSFIRLAREAGLEYIEIQNL 240

Query: 241 NEFYDDNR 248
            EF+DD+R
Sbjct: 241 TEFFDDHR 248

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449657|ref|XP_002263006.1| PREDICTED: mRNA cap guanine-N7 methyltransferase 2-like [Vitis vinifera]

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 185/249 (74%), Positives = 212/249 (85%), Gaps = 1/249 (0%)

Query: 1   MSVLPIPRS-ELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIG 59
           M+ +P PR+ E THHRL+EFAKTALIKI+  PY TVCDLY GAG D DKW+ A I +YIG
Sbjct: 1   MTSIPAPRTAESTHHRLFEFAKTALIKIFVSPYATVCDLYAGAGSDADKWDEAQIGHYIG 60

Query: 60  IDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCF 119
           IDV++SGI   ++ WE+QRK++ A+F+E DP  EN E  +Q+K N AD+VCC QHLQ+ F
Sbjct: 61  IDVSSSGISHTKEVWESQRKSYNADFYELDPSMENLELNLQDKCNTADVVCCLQHLQLGF 120

Query: 120 ETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCI 179
           E E++ RRLL NV+SLLKPGGYF GITPDSSTIWAKYQKNVEAYHNR SSMKPN+VPNCI
Sbjct: 121 ENEDKGRRLLHNVASLLKPGGYFFGITPDSSTIWAKYQKNVEAYHNRGSSMKPNIVPNCI 180

Query: 180 RSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQN 239
           RSESY+ITFEVEEEKFP FGKKYQLKF+ND SAET CLVHFPSLIRLAREAGLEYVEIQN
Sbjct: 181 RSESYMITFEVEEEKFPFFGKKYQLKFSNDTSAETYCLVHFPSLIRLAREAGLEYVEIQN 240

Query: 240 LNEFYDDNR 248
           L +FYDDNR
Sbjct: 241 LTDFYDDNR 249

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090379|emb|CBI40198.3| unnamed protein product [Vitis vinifera]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 185/249 (74%), Positives = 212/249 (85%), Gaps = 1/249 (0%)

Query: 1   MSVLPIPRS-ELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIG 59
           M+ +P PR+ E THHRL+EFAKTALIKI+  PY TVCDLY GAG D DKW+ A I +YIG
Sbjct: 1   MTSIPAPRTAESTHHRLFEFAKTALIKIFVSPYATVCDLYAGAGSDADKWDEAQIGHYIG 60

Query: 60  IDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCF 119
           IDV++SGI   ++ WE+QRK++ A+F+E DP  EN E  +Q+K N AD+VCC QHLQ+ F
Sbjct: 61  IDVSSSGISHTKEVWESQRKSYNADFYELDPSMENLELNLQDKCNTADVVCCLQHLQLGF 120

Query: 120 ETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCI 179
           E E++ RRLL NV+SLLKPGGYF GITPDSSTIWAKYQKNVEAYHNR SSMKPN+VPNCI
Sbjct: 121 ENEDKGRRLLHNVASLLKPGGYFFGITPDSSTIWAKYQKNVEAYHNRGSSMKPNIVPNCI 180

Query: 180 RSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQN 239
           RSESY+ITFEVEEEKFP FGKKYQLKF+ND SAET CLVHFPSLIRLAREAGLEYVEIQN
Sbjct: 181 RSESYMITFEVEEEKFPFFGKKYQLKFSNDTSAETYCLVHFPSLIRLAREAGLEYVEIQN 240

Query: 240 LNEFYDDNR 248
           L +FYDDNR
Sbjct: 241 LTDFYDDNR 249

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516035|ref|XP_003526702.1| PREDICTED: mRNA cap guanine-N7 methyltransferase 2-like [Glycine max]

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 184/240 (76%), Positives = 206/240 (85%), Gaps = 1/240 (0%)

Query: 9   SELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIG 68
           S+ T  RLY+FAK ALI I+ HPY TVCDLYCG   D DKW  A I +YIGID  +SGI 
Sbjct: 2   SQPTQQRLYDFAKMALINIFVHPYATVCDLYCG-DADADKWAHAQIGHYIGIDAPSSGID 60

Query: 69  EARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRL 128
           + R+TWE  RK++ AEFFE DPC EN ET ++EK N  D+VCC QHLQ+CFETEE+AR+L
Sbjct: 61  QMRETWETHRKSYTAEFFELDPCTENIETHLEEKTNMTDVVCCLQHLQLCFETEEKARKL 120

Query: 129 LQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITF 188
           L NVSSLLKPGGYFLGITPDSSTIWAKYQ+NVEAYHN+SSSMKPN+VPNCIR+E+Y+ITF
Sbjct: 121 LHNVSSLLKPGGYFLGITPDSSTIWAKYQRNVEAYHNKSSSMKPNIVPNCIRTENYMITF 180

Query: 189 EVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNR 248
           EVEEEKFPLFGKKYQLKFAND+SAET CLVHFPS IRLAREAGLEYVEIQNL EFYDDNR
Sbjct: 181 EVEEEKFPLFGKKYQLKFANDVSAETYCLVHFPSFIRLAREAGLEYVEIQNLTEFYDDNR 240

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507590|ref|XP_003522547.1| PREDICTED: mRNA cap guanine-N7 methyltransferase 2-like [Glycine max]

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 183/240 (76%), Positives = 207/240 (86%), Gaps = 1/240 (0%)

Query: 9   SELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIG 68
           S+ T  RLY+FAK ALI I++HPY TVCDLYCG   D DKW  A I +YIGID  +SGI 
Sbjct: 2   SQSTQQRLYDFAKMALINIFAHPYATVCDLYCG-DADADKWVDAQIGHYIGIDAPSSGIE 60

Query: 69  EARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRL 128
           + R+ WE  RK++ AEFFE DPC +N ET ++EK N AD+VCC QHLQ+CFETEE+AR+L
Sbjct: 61  QMREAWEIHRKSYTAEFFELDPCTKNTETHLEEKTNVADVVCCLQHLQLCFETEEKARKL 120

Query: 129 LQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITF 188
           L NVSSLLKPGGYFLGITPDSSTIWAKYQ+NVEAYHN+SSSMKPN+VPNCIR+E+Y+ITF
Sbjct: 121 LHNVSSLLKPGGYFLGITPDSSTIWAKYQRNVEAYHNKSSSMKPNIVPNCIRTENYMITF 180

Query: 189 EVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNR 248
           EVEEEKFPLFGKKYQLKFAND+SAET CLVHFPS IRLAREAGLEYVEIQNL EFYDDNR
Sbjct: 181 EVEEEKFPLFGKKYQLKFANDVSAETHCLVHFPSFIRLAREAGLEYVEIQNLTEFYDDNR 240

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586607|ref|XP_002533936.1| mRNA (guanine-7-)methyltransferase, putative [Ricinus communis] gi|223526091|gb|EEF28443.1| mRNA (guanine-7-)methyltransferase, putative [Ricinus communis]

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 180/229 (78%), Positives = 201/229 (87%), Gaps = 8/229 (3%)

Query: 4   LPIPRSELTHHRLYEFAKTALIKIYSHPYVTV--------CDLYCGAGVDVDKWETALIA 55
            PIPR+E THHRLYEFAK+ALIKI+ HPYVTV        CDLYCG  VD +KW+ A I 
Sbjct: 8   FPIPRTESTHHRLYEFAKSALIKIFVHPYVTVSALSLNSVCDLYCGGVVDAEKWDIAQIG 67

Query: 56  NYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHL 115
           +Y+GIDV++SG+ E R+ WE+QRKN+ AEFFEADPC+E FE Q+QEKANQADLVCC Q+L
Sbjct: 68  HYVGIDVSSSGVSELREAWESQRKNYTAEFFEADPCSEIFEKQLQEKANQADLVCCLQNL 127

Query: 116 QMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLV 175
           Q+CFETEE AR+LL NVSSLLKPGGYF GITPDSSTIWAKYQKNVEAYHNRSSSMKPN+V
Sbjct: 128 QLCFETEESARKLLHNVSSLLKPGGYFFGITPDSSTIWAKYQKNVEAYHNRSSSMKPNIV 187

Query: 176 PNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLI 224
           PNCIRSESY+ITFEVEEEKFPLFGKKYQLKFA+DISAET CLVHFPSLI
Sbjct: 188 PNCIRSESYMITFEVEEEKFPLFGKKYQLKFAHDISAETHCLVHFPSLI 236

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463871|ref|XP_003602217.1| mRNA cap guanine-N7 methyltransferase [Medicago truncatula] gi|355491265|gb|AES72468.1| mRNA cap guanine-N7 methyltransferase [Medicago truncatula]

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 176/237 (74%), Positives = 199/237 (83%), Gaps = 1/237 (0%)

Query: 13  HHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARD 72
           H RLY+FAK ALIKI++HPY TVC+LYCG   D  KW  + IANYIGIDV++S I + R 
Sbjct: 18  HQRLYDFAKMALIKIFAHPYATVCELYCGEASDAHKWLDSQIANYIGIDVSSSAIQQIRQ 77

Query: 73  TW-ENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQN 131
           +  +N  K+    FF  DP  E+ E ++++K N  D VCC QHLQ+CFETEE+ARRLLQN
Sbjct: 78  SLGDNNNKSCTTHFFHLDPSTESIEIRLEDKTNTVDFVCCLQHLQLCFETEEKARRLLQN 137

Query: 132 VSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVE 191
           VSSLLKPGGYFLGITPDSSTIWAKYQKNVE+YHNRSSSMKPN+VPNCIR+E+Y I FEVE
Sbjct: 138 VSSLLKPGGYFLGITPDSSTIWAKYQKNVESYHNRSSSMKPNIVPNCIRTENYTIAFEVE 197

Query: 192 EEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNR 248
           EEKFPLFGKKYQLKFAND+SAET CLVHFPSLIRLAREAGLEYVEIQNL EFYDDNR
Sbjct: 198 EEKFPLFGKKYQLKFANDVSAETHCLVHFPSLIRLAREAGLEYVEIQNLTEFYDDNR 254

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79314795|ref|NP_001030844.1| mRNA cap guanine-N7 methyltransferase 2 [Arabidopsis thaliana] gi|332645395|gb|AEE78916.1| mRNA cap guanine-N7 methyltransferase 2 [Arabidopsis thaliana]

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 171/248 (68%), Positives = 205/248 (82%), Gaps = 1/248 (0%)

Query: 1   MSVLPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGI 60
           MS   + + E +HHRL++FAKTA+I I++HPY TVC+LYCG   + DKWE A I +YIGI
Sbjct: 1   MSGFVVSKPEQSHHRLFDFAKTAIINIFAHPYATVCELYCGGAPETDKWEAAPIGHYIGI 60

Query: 61  DVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFE 120
              +SGI   R+ WE+QRKN+  EFFEADP  ++FE Q+Q+K  QADLV C++HLQ+CFE
Sbjct: 61  VDTSSGISSVREAWESQRKNYDVEFFEADPSKDDFEIQLQKKLEQADLVSCWRHLQLCFE 120

Query: 121 TEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIR 180
           TEE ARRLL NV+ LLKPGGYF GITPDSSTIWAKYQKNVEAYHNRS + KPN+ PN IR
Sbjct: 121 TEESARRLLTNVACLLKPGGYFFGITPDSSTIWAKYQKNVEAYHNRSGA-KPNVFPNYIR 179

Query: 181 SESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL 240
           SESY+ITFE+EEEKFPLFGK+YQLKF+ D ++E  CLVHFPSLIRLAREAGLE+VEIQ+L
Sbjct: 180 SESYMITFELEEEKFPLFGKRYQLKFSGDNASEDHCLVHFPSLIRLAREAGLEFVEIQSL 239

Query: 241 NEFYDDNR 248
            +FYDDNR
Sbjct: 240 TDFYDDNR 247

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42565855|ref|NP_190789.3| mRNA cap guanine-N7 methyltransferase 2 [Arabidopsis thaliana] gi|75105185|sp|Q5HZ60.1|MCES2_ARATH RecName: Full=mRNA cap guanine-N7 methyltransferase 2; AltName: Full=mRNA (guanine-N(7)-)-methyltransferase 2; AltName: Full=mRNA cap methyltransferase 2 gi|57222116|gb|AAW38965.1| At3g52210 [Arabidopsis thaliana] gi|58531336|gb|AAW78590.1| At3g52210 [Arabidopsis thaliana] gi|332645393|gb|AEE78914.1| mRNA cap guanine-N7 methyltransferase 2 [Arabidopsis thaliana]

 Score =  372 bits (954), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 172/248 (69%), Positives = 206/248 (83%), Gaps = 2/248 (0%)

Query: 1   MSVLPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGI 60
           MS   + + E +HHRL++FAKTA+I I++HPY TVC+LYCG   + DKWE A I +YIGI
Sbjct: 1   MSGFVVSKPEQSHHRLFDFAKTAIINIFAHPYATVCELYCGGAPETDKWEAAPIGHYIGI 60

Query: 61  DVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFE 120
           D  +SGI   R+ WE+QRKN+  EFFEADP  ++FE Q+Q+K  QADLV C++HLQ+CFE
Sbjct: 61  DT-SSGISSVREAWESQRKNYDVEFFEADPSKDDFEIQLQKKLEQADLVSCWRHLQLCFE 119

Query: 121 TEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIR 180
           TEE ARRLL NV+ LLKPGGYF GITPDSSTIWAKYQKNVEAYHNRS + KPN+ PN IR
Sbjct: 120 TEESARRLLTNVACLLKPGGYFFGITPDSSTIWAKYQKNVEAYHNRSGA-KPNVFPNYIR 178

Query: 181 SESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL 240
           SESY+ITFE+EEEKFPLFGK+YQLKF+ D ++E  CLVHFPSLIRLAREAGLE+VEIQ+L
Sbjct: 179 SESYMITFELEEEKFPLFGKRYQLKFSGDNASEDHCLVHFPSLIRLAREAGLEFVEIQSL 238

Query: 241 NEFYDDNR 248
            +FYDDNR
Sbjct: 239 TDFYDDNR 246

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
FB|FBgn0001974	427	l(2)35Bd "lethal (2) 35Bd" [Dr	0.802	0.466	0.292	4.8e-21
TAIR|locus:2083420	370	AT3G20650 "AT3G20650" [Arabido	0.875	0.586	0.312	2.8e-20
UNIPROTKB|K7EP06	298	RNMT "mRNA cap guanine-N7 meth	0.620	0.516	0.301	1.2e-18
WB|WBGene00006447	380	tag-72 [Caenorhabditis elegans	0.786	0.513	0.319	1.4e-18
UNIPROTKB|Q9XVS1	380	tag-72 "mRNA cap guanine-N7 me	0.786	0.513	0.319	1.4e-18
RGD|1309242	461	Rnmt "RNA (guanine-7-) methylt	0.620	0.334	0.301	6.3e-18
MGI|MGI:1915147	465	Rnmt "RNA (guanine-7-) methylt	0.620	0.331	0.295	1.7e-17
UNIPROTKB|O43148	476	RNMT "mRNA cap guanine-N7 meth	0.620	0.323	0.301	1.9e-17
SGD|S000000440	436	ABD1 "Methyltransferase" [Sacc	0.870	0.495	0.316	1.9e-17
UNIPROTKB|Q4R7K1	476	RNMT "mRNA cap guanine-N7 meth	0.620	0.323	0.306	2.9e-17

FB|FBgn0001974 l(2)35Bd "lethal (2) 35Bd" [Drosophila melanogaster (taxid:7227)]

 Score = 251 (93.4 bits), Expect = 4.8e-21, P = 4.8e-21
 Identities = 65/222 (29%), Positives = 108/222 (48%)

Query:    35 VCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN--QRKN-------FIAEF 85
             V D+ CG G D+ KWE A I++ I  D+A   + + +  +++  QR         F AEF
Sbjct:   139 VLDMCCGKGGDLLKWEKAAISHLICTDIAEVSVEQCQRRYQDILQRSEKSKFANKFTAEF 198

Query:    86 FEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145
             F  D        + ++ + Q +LV C      CFE+  +A  +++N +  LKPGG+F+  
Sbjct:   199 FACDSTLVRLRERYKDPSLQLNLVSCQFAFHYCFESMAQADCMMRNAAECLKPGGFFIAT 258

Query:   146 TPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLK 205
              PD+  I  +          R++        N +    Y I F+ E +  PLFG KYQ  
Sbjct:   259 MPDAYEIIRRL---------RAAGPDARRFGNDV----YSIEFDCETDPLPLFGAKYQFH 305

Query:   206 FANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDN 247
                 +    + LVHFP+L++L R+ GL+ ++     ++Y +N
Sbjct:   306 LEGVVDCP-EFLVHFPTLVKLGRKYGLQLLKRSTFADYYKEN 346

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=ISS

GO:0003723 "RNA binding" evidence=ISS

GO:0006370 "7-methylguanosine mRNA capping" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

TAIR|locus:2083420 AT3G20650 "AT3G20650" [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 2.8e-20, P = 2.8e-20
 Identities = 78/250 (31%), Positives = 121/250 (48%)

Query:     9 SELTH-HRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGI 67
             S + H  +L  + K+ LI++Y+ P   V DL CG G D+ KW+ A I  Y+GID+A   I
Sbjct:    61 SPIIHLKKLNNWIKSVLIQLYARPDDAVLDLACGKGGDLIKWDKARIGYYVGIDIAEGSI 120

Query:    68 GEARDTWEN------QRKNFIAEFFEADPCAENFETQMQ---EKANQADLVCCFQHLQMC 118
              + R  +        +RK F   F     C + FE ++    E+    D+  C   +   
Sbjct:   121 EDCRTRYNGDADHHQRRKKF--SFPSRLLCGDCFEVELDKILEEDAPFDICSCQFAMHYS 178

Query:   119 FETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNC 178
             + TE RARR L NVS+LL+PGG F+G  PD++ I  K ++        +  ++   + N 
Sbjct:   179 WTTEARARRALANVSALLRPGGVFIGTMPDANVIIKKLRE--------AEGLE---IGNS 227

Query:   179 IRSESYVITF--EVEEEKFPL---FGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLE 233
             +    Y I F  E  ++KF     FG +Y     + +    + +V F     LA E  LE
Sbjct:   228 V----YWIRFGEEYSQKKFKSSSPFGIEYVFHLEDAVDCP-EWIVPFNVFKSLAEEYDLE 282

Query:   234 YVEIQNLNEF 243
              V ++N +EF
Sbjct:   283 LVFVKNSHEF 292

GO:0003824 "catalytic activity" evidence=ISS

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006370 "7-methylguanosine mRNA capping" evidence=IEA;ISS

GO:0015824 "proline transport" evidence=RCA

UNIPROTKB|K7EP06 RNMT "mRNA cap guanine-N7 methyltransferase" [Homo sapiens (taxid:9606)]

 Score = 176 (67.0 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
 Identities = 53/176 (30%), Positives = 83/176 (47%)

Query:    33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWE---NQRKN---FIAEFF 86
             +TV DL CG G D+ KW+   I   +  D+A   + + +  +E   N+R +   F AEF 
Sbjct:    21 ITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFI 80

Query:    87 EADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146
              AD   E    + ++     D+  C       FE+ E+A  +L+N    L PGGYF+G T
Sbjct:    81 TADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTT 140

Query:   147 PDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKY 202
             P+S  +     + +EA    S             +E Y + F+ + + +PLFG KY
Sbjct:   141 PNSFELI----RRLEASETESFG-----------NEIYTVKFQKKGD-YPLFGCKY 180

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

WB|WBGene00006447 tag-72 [Caenorhabditis elegans (taxid:6239)]

 Score = 227 (85.0 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 68/213 (31%), Positives = 99/213 (46%)

Query:    35 VCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ---RKN--FIAEFFEAD 89
             V DL CG G D+ KW+ A   + +  DVA   I +A + ++     +KN  F  +F  AD
Sbjct:    58 VLDLACGKGGDLKKWDIAGAKDVVMADVADVSIQQAEERYKQMFGYKKNNIFTVQFIVAD 117

Query:    90 PCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149
                EN E +++ K +  DLV C   L   F  E  AR  L+N   +LKPGG F+G  PD+
Sbjct:   118 CTKENLEDRIENK-DPFDLVSCQFALHYSFVDEASARIFLKNAVGMLKPGGVFIGTLPDA 176

Query:   150 STIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFAND 209
               I       V +  N  +    N V  C    +Y    E+ E K PLFG K+       
Sbjct:   177 DRI-------VWSMRNGENGQFANEV--C--KITYENVEELAEGKVPLFGAKFHFSLDEQ 225

Query:   210 ISAETQCLVHFPSLIRLAREAGLEYVEIQNLNE 242
             ++   + L +FP +  L  E  +E + + N  E
Sbjct:   226 VNCP-EFLAYFPLVKHLLEELDMELLFVHNFAE 257

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006370 "7-methylguanosine mRNA capping" evidence=IEA

UNIPROTKB|Q9XVS1 tag-72 "mRNA cap guanine-N7 methyltransferase" [Caenorhabditis elegans (taxid:6239)]

 Score = 227 (85.0 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 68/213 (31%), Positives = 99/213 (46%)

Query:    35 VCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ---RKN--FIAEFFEAD 89
             V DL CG G D+ KW+ A   + +  DVA   I +A + ++     +KN  F  +F  AD
Sbjct:    58 VLDLACGKGGDLKKWDIAGAKDVVMADVADVSIQQAEERYKQMFGYKKNNIFTVQFIVAD 117

Query:    90 PCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149
                EN E +++ K +  DLV C   L   F  E  AR  L+N   +LKPGG F+G  PD+
Sbjct:   118 CTKENLEDRIENK-DPFDLVSCQFALHYSFVDEASARIFLKNAVGMLKPGGVFIGTLPDA 176

Query:   150 STIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFAND 209
               I       V +  N  +    N V  C    +Y    E+ E K PLFG K+       
Sbjct:   177 DRI-------VWSMRNGENGQFANEV--C--KITYENVEELAEGKVPLFGAKFHFSLDEQ 225

Query:   210 ISAETQCLVHFPSLIRLAREAGLEYVEIQNLNE 242
             ++   + L +FP +  L  E  +E + + N  E
Sbjct:   226 VNCP-EFLAYFPLVKHLLEELDMELLFVHNFAE 257

GO:0036265 "RNA (guanine-N7)-methylation" evidence=ISS

GO:0006370 "7-methylguanosine mRNA capping" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=ISS

GO:0003723 "RNA binding" evidence=ISS

RGD|1309242 Rnmt "RNA (guanine-7-) methyltransferase" [Rattus norvegicus (taxid:10116)]

 Score = 177 (67.4 bits), Expect = 6.3e-18, Sum P(2) = 6.3e-18
 Identities = 53/176 (30%), Positives = 82/176 (46%)

Query:    33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN---QRKN---FIAEFF 86
             +TV DL CG G D+ KW    I+  +  D+A   + + +  +E+   +R N   F AEF 
Sbjct:   184 ITVLDLGCGKGGDLLKWRKGRISRLVCADIADISMKQCQQRYEDMKCRRDNEYIFSAEFI 243

Query:    87 EADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146
              AD   E    +  +     D+  C       FE+ E+A  +L+N    L PGGYF+G T
Sbjct:   244 TADCSKELLVEKFHDPEMYFDICSCQFACHYSFESLEQADMMLRNACGRLNPGGYFIGTT 303

Query:   147 PDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKY 202
             P+S  +     + +EA    S             +E Y + F+ ++  +PLFG KY
Sbjct:   304 PNSFELI----RRLEASETESFG-----------NEIYTVKFQ-KKGNYPLFGCKY 343

GO:0003674 "molecular_function" evidence=ND

GO:0003723 "RNA binding" evidence=IEA;ISO;ISS

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=IEA;ISO;ISS

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA;ISO;ISS

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005845 "mRNA cap binding complex" evidence=ISO;ISS

GO:0006370 "7-methylguanosine mRNA capping" evidence=ISO;ISS

GO:0008150 "biological_process" evidence=ND

GO:0036265 "RNA (guanine-N7)-methylation" evidence=ISO

MGI|MGI:1915147 Rnmt "RNA (guanine-7-) methyltransferase" [Mus musculus (taxid:10090)]

 Score = 175 (66.7 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
 Identities = 52/176 (29%), Positives = 83/176 (47%)

Query:    33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN---QRKN---FIAEFF 86
             +TV DL CG G D+ KW    I+  +  D+A   + + +  +E+   +R N   F AEF 
Sbjct:   188 ITVLDLGCGKGGDLLKWRKGRISRLVCADIADISMKQCQQRYEDMRCRRDNEHIFSAEFI 247

Query:    87 EADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146
              AD   E    + ++     D+  C       FE++ +A  +L+N    L PGGYF+G T
Sbjct:   248 TADCSKELLVEKFRDPEMYFDVCSCQFACHYSFESQVQADTMLRNACGRLNPGGYFIGTT 307

Query:   147 PDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKY 202
             P+S  +     + +EA    S             +E Y + F+ ++  +PLFG KY
Sbjct:   308 PNSFELI----RRLEASETESFG-----------NEIYTVKFQ-KKGNYPLFGCKY 347

GO:0003723 "RNA binding" evidence=ISO

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005845 "mRNA cap binding complex" evidence=ISO

GO:0006370 "7-methylguanosine mRNA capping" evidence=ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0036265 "RNA (guanine-N7)-methylation" evidence=ISO

GO:0080009 "mRNA methylation" evidence=ISO

UNIPROTKB|O43148 RNMT "mRNA cap guanine-N7 methyltransferase" [Homo sapiens (taxid:9606)]

 Score = 176 (67.0 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
 Identities = 53/176 (30%), Positives = 83/176 (47%)

Query:    33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWE---NQRKN---FIAEFF 86
             +TV DL CG G D+ KW+   I   +  D+A   + + +  +E   N+R +   F AEF 
Sbjct:   199 ITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFI 258

Query:    87 EADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146
              AD   E    + ++     D+  C       FE+ E+A  +L+N    L PGGYF+G T
Sbjct:   259 TADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTT 318

Query:   147 PDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKY 202
             P+S  +     + +EA    S             +E Y + F+ + + +PLFG KY
Sbjct:   319 PNSFELI----RRLEASETESFG-----------NEIYTVKFQKKGD-YPLFGCKY 358

GO:0006370 "7-methylguanosine mRNA capping" evidence=IMP;TAS

GO:0003723 "RNA binding" evidence=IMP

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=IDA;IMP;TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005845 "mRNA cap binding complex" evidence=IDA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0036265 "RNA (guanine-N7)-methylation" evidence=IMP;IDA;TAS

GO:0005730 "nucleolus" evidence=IDA

SGD|S000000440 ABD1 "Methyltransferase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 219 (82.2 bits), Expect = 1.9e-17, P = 1.9e-17
 Identities = 73/231 (31%), Positives = 105/231 (45%)

Query:    21 KTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK- 79
             K  LI  Y+ P   V +L CG G D+ K+  A I+ +IGID++ + I EA   + + R  
Sbjct:   154 KYMLIDKYTKPGDVVLELGCGKGGDLRKYGAAGISQFIGIDISNASIQEAHKRYRSMRNL 213

Query:    80 NFIAEFFEADPCAENFETQMQEKAN---QADLVCCFQHLQMCFETEERARRLLQNVSSLL 136
             ++       D   E+    ++   +     D+V     L   FETEE+ARR L NV+  L
Sbjct:   214 DYQVVLITGDCFGESLGVAVEPFPDCRFPCDIVSTQFCLHYAFETEEKARRALLNVAKSL 273

Query:   137 KPGGYFLGITPDSSTI---WAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEE 193
             K GG+F G  PDS  I     K+ K VE     +S  K     N  +   Y  T      
Sbjct:   274 KIGGHFFGTIPDSEFIRYKLNKFPKEVEKPSWGNSIYKVTFENNSYQKNDYEFTS----- 328

Query:   194 KFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFY 244
               P +G+ Y     + I    + +V F +L  LA E GLE V     N+F+
Sbjct:   329 --P-YGQMYTYWLEDAIDNVPEYVVPFETLRSLADEYGLELVSQMPFNKFF 376

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=IEA;ISS;IDA

GO:0006370 "7-methylguanosine mRNA capping" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=IEA;IPI

GO:0016591 "DNA-directed RNA polymerase II, holoenzyme" evidence=IPI

GO:0036265 "RNA (guanine-N7)-methylation" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IMP

UNIPROTKB|Q4R7K1 RNMT "mRNA cap guanine-N7 methyltransferase" [Macaca fascicularis (taxid:9541)]

 Score = 175 (66.7 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
 Identities = 54/176 (30%), Positives = 83/176 (47%)

Query:    33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWE---NQRKN---FIAEFF 86
             +TV DL CG G D+ KW+   I   +  D+A   I + +  +E   N+R +   F AEF 
Sbjct:   199 ITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSIKQCQQRYEDMKNRRDSEYIFSAEFI 258

Query:    87 EADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146
              AD   E    + ++     D+  C       FE+ E+A  +L+N    L PGGYF+G T
Sbjct:   259 TADCSKELLIEKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTT 318

Query:   147 PDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKY 202
             P+S  +     + +EA    S             +E Y + F+ + + +PLFG KY
Sbjct:   319 PNSFELI----RRLEASETESFG-----------NEIYTVKFQKKGD-YPLFGCKY 358

GO:0003723 "RNA binding" evidence=ISS

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005845 "mRNA cap binding complex" evidence=ISS

GO:0006370 "7-methylguanosine mRNA capping" evidence=ISS

GO:0036265 "RNA (guanine-N7)-methylation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5HZ60	MCES2_ARATH	2, ., 1, ., 1, ., 5, 6	0.6935	0.9919	0.6949	yes	no
Q6K833	MCES2_ORYSJ	2, ., 1, ., 1, ., 5, 6	0.7161	0.9354	0.6843	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.921
4th Layer	2.1.1.56	0.914
4th Layer	2.1.1.145	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0022048701 hypothetical protein (288 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	248
pfam03291	327	pfam03291, Pox_MCEL, mRNA capping enzyme	1e-32
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	5e-08
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	7e-08
pfam13649	97	pfam13649, Methyltransf_25, Methyltransferase doma	9e-08
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	3e-06
pfam13489	154	pfam13489, Methyltransf_23, Methyltransferase doma	2e-05
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	3e-04
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	0.001

>gnl|CDD|217477 pfam03291, Pox_MCEL, mRNA capping enzyme

 Score =  120 bits (304), Expect = 1e-32
 Identities = 70/242 (28%), Positives = 112/242 (46%), Gaps = 29/242 (11%)

Query: 21  KTALIKIY-SH-----PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTW 74
           K+ LI +Y S      P   V DL CG G D++K+    I+  IG D+A   I +A++ +
Sbjct: 47  KSLLISLYASKTFQDKPKRKVLDLDCGKGGDLEKYFKGGISGLIGTDIAEVSIEQAQERY 106

Query: 75  E------NQRKN---FIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERA 125
                    +     FIAEF   D    +     +    + D+V     +   FE+EE+A
Sbjct: 107 NDLNSRSKSKYYKFDFIAEFITGDCFVSSVREVFEPGQRKFDIVSWQFAIHYSFESEEKA 166

Query: 126 RRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYV 185
           R +L+N++ LL  GG F+G TPD   I  K           +     +   N I    Y 
Sbjct: 167 RTMLRNLAELLASGGKFIGTTPDGDFIIKKLT--------ATFVEHKSF-GNSI----YY 213

Query: 186 ITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYD 245
           ++FE ++   P FG KY     + ++   + LV F +L+ LA E GLE V+ +  ++ Y+
Sbjct: 214 VSFE-KDPPRPPFGIKYVYNLEDMVTDVPEYLVPFETLVELAEEYGLELVDKKTFHDIYN 272

Query: 246 DN 247
           + 
Sbjct: 273 EE 274

This family of enzymes are related to pfam03919. Length = 327

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 50.5 bits (121), Expect = 5e-08
 Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 14/120 (11%)

Query: 33  VTVCDLYCGAGVDVDKWETALI--ANYIGIDVATSGIGEARDTWENQRKNFI--AEFFEA 88
           + V DL CG G         L   A  +GID++   I +A+   EN +K      EF + 
Sbjct: 5   IKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAK---ENAKKLGYENVEFIQG 61

Query: 89  DPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148
           D   E      Q + N  D+V   + L    + ++    +L+ +  +LKPGG  +   P 
Sbjct: 62  D--IEELPQL-QLEDNSFDVVISNEVLNHLPDPDK----VLEEIIRVLKPGGVLIVSDPV 114

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 49.0 bits (117), Expect = 7e-08
 Identities = 25/110 (22%), Positives = 37/110 (33%), Gaps = 9/110 (8%)

Query: 34  TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE 93
            V DL CG G       +   A   G+D++   +  AR        + + E  + D    
Sbjct: 1   RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNV-EVLKGD---- 55

Query: 94  NFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143
             E    E     D++             E   R L+    LLKPGG  +
Sbjct: 56  -AEELPPEADESFDVIISD---PPLHHLVEDLARFLEEARRLLKPGGVLV 101

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain

 Score = 48.5 bits (116), Expect = 9e-08
 Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 9/106 (8%)

Query: 35  VCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN 94
           + DL CG G  +     A  ++  G+D++   +  A++    + K     F  AD     
Sbjct: 1   ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKER--LRDKGPKVRFVVADA---- 54

Query: 95  FETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGG 140
               +  +    DLV C          ++  R LL+  + LL+PGG
Sbjct: 55  --RDLPFEEGSFDLVICAGLSLDYLSPKQ-LRALLREAARLLRPGG 97

This family appears to be a methyltransferase domain. Length = 97

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 22/107 (20%), Positives = 37/107 (34%), Gaps = 17/107 (15%)

Query: 37  DLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE 96
           D+ CG G+  +       A   G+D++   +  AR     +R     +F   D     F 
Sbjct: 2   DVGCGTGLLAEALARRGGARVTGVDLSPEMLALAR-----KRAPR--KFVVGDAEDLPFP 54

Query: 97  TQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143
                     D+V                 R L+ ++ +LKPGG  +
Sbjct: 55  ------DESFDVVVSSL----VLHHLPDPERALREIARVLKPGGKLV 91

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 27/126 (21%), Positives = 38/126 (30%), Gaps = 26/126 (20%)

Query: 34  TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE 93
            V D+ CG G+ +         +  G+D                     + F   DP   
Sbjct: 25  RVLDIGCGTGILLRLLRERG-FDVTGVD------------PSPAAVLIFSLFDAPDP--- 68

Query: 94  NFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIW 153
                    A + DL+  F       E       LLQ +  LLKPGG  L  TP +    
Sbjct: 69  ------AVLAGKYDLITAF----EVLEHLPDPPALLQQLRELLKPGGVLLISTPLADDDA 118

Query: 154 AKYQKN 159
             +   
Sbjct: 119 RLFANW 124

This family appears to be a methyltransferase domain. Length = 154

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 24/107 (22%), Positives = 36/107 (33%), Gaps = 11/107 (10%)

Query: 37  DLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF 95
           D+ CG G  +     AL    Y G+D++ + +  A +          A     D      
Sbjct: 2   DIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAER-LAALGLLDAVRVRLDVLDAID 60

Query: 96  ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYF 142
                      D+V     L          R +L+N+  LLKPGG  
Sbjct: 61  L-----DPGSFDVVVASNVLH-HLAD---PRAVLRNLRRLLKPGGVL 98

Members of this family are SAM dependent methyltransferases. Length = 98

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 27/118 (22%), Positives = 41/118 (34%), Gaps = 29/118 (24%)

Query: 34  TVCDLYCGAGVDVDKWETALIA------NYIGIDVATSGIGEARDTWENQRKNFIA--EF 85
            V D+ CG G          +A         G+D++   +  AR   EN +        F
Sbjct: 4   RVLDIGCGTG-----SLAIELARLFPGARVTGVDLSPEMLELAR---ENAKLALGPRITF 55

Query: 86  FEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143
            + D  A +    ++      D V          E       LL  ++SLLKPGG  +
Sbjct: 56  VQGD--APDALDLLEG----FDAVFIGGGGGDLLE-------LLDALASLLKPGGRLV 100

Protein in this family function as methyltransferases. Length = 104

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	248
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	100.0
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	100.0
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.9
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.89
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.83
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.81
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.81
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.8
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.8
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.79
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.78
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.78
PLN02244	340	tocopherol O-methyltransferase	99.78
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.76
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.74
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.74
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.74
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.73
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.71
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.71
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.71
PRK05785	226	hypothetical protein; Provisional	99.71
PRK11207	197	tellurite resistance protein TehB; Provisional	99.7
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.7
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.7
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.69
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.69
KOG1271	227	consensus Methyltransferases [General function pre	99.69
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.69
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.68
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.67
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.67
PLN02336	475	phosphoethanolamine N-methyltransferase	99.66
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.66
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.66
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.66
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.65
PLN02490	340	MPBQ/MSBQ methyltransferase	99.65
TIGR03438	301	probable methyltransferase. This model represents	99.64
PRK12335	287	tellurite resistance protein TehB; Provisional	99.64
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.63
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.63
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.63
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.63
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.63
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.61
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.61
PRK06202	232	hypothetical protein; Provisional	99.61
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.6
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.6
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.59
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.59
KOG4300	252	consensus Predicted methyltransferase [General fun	99.58
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.58
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.57
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.57
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.57
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.56
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.56
PRK06922	677	hypothetical protein; Provisional	99.56
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.54
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.53
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.52
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.52
PRK08317	241	hypothetical protein; Provisional	99.52
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.52
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.52
PLN03075	296	nicotianamine synthase; Provisional	99.52
KOG2361	264	consensus Predicted methyltransferase [General fun	99.51
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.5
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.5
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.5
KOG3010	261	consensus Methyltransferase [General function pred	99.49
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.48
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.48
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.47
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.47
PLN02336	475	phosphoethanolamine N-methyltransferase	99.47
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.46
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.45
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.45
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.45
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.44
PRK04266	226	fibrillarin; Provisional	99.44
PRK14967	223	putative methyltransferase; Provisional	99.43
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.43
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.42
PLN02232	160	ubiquinone biosynthesis methyltransferase	99.41
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.41
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.41
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.4
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.39
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.39
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.38
PRK14968	188	putative methyltransferase; Provisional	99.38
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.36
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.36
PTZ00146	293	fibrillarin; Provisional	99.35
PRK07402	196	precorrin-6B methylase; Provisional	99.34
PRK04457	262	spermidine synthase; Provisional	99.34
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.34
COG4123	248	Predicted O-methyltransferase [General function pr	99.34
TIGR00438	188	rrmJ cell division protein FtsJ.	99.33
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.33
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.32
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	99.32
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.31
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.3
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.29
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.28
PRK00811	283	spermidine synthase; Provisional	99.28
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.28
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.28
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	99.28
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.27
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.24
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.22
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.22
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	99.19
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.18
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.18
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.16
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.15
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.15
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.15
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.15
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.13
PHA03411	279	putative methyltransferase; Provisional	99.13
PRK01581	374	speE spermidine synthase; Validated	99.12
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.12
COG2890	280	HemK Methylase of polypeptide chain release factor	99.12
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.11
KOG2940	325	consensus Predicted methyltransferase [General fun	99.11
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.1
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	99.1
KOG2904	328	consensus Predicted methyltransferase [General fun	99.09
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.09
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.09
PLN02366	308	spermidine synthase	99.08
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.08
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	99.05
PHA03412	241	putative methyltransferase; Provisional	99.04
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.04
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.04
PLN02476	278	O-methyltransferase	99.0
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.0
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.99
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.99
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.99
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.98
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.98
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.97
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.96
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.96
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.96
PRK03612	521	spermidine synthase; Provisional	98.95
KOG2899	288	consensus Predicted methyltransferase [General fun	98.94
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.89
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.88
COG4122	219	Predicted O-methyltransferase [General function pr	98.88
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	98.88
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.86
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.86
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.85
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.84
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.84
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.83
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.82
PLN02672	1082	methionine S-methyltransferase	98.81
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.78
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.77
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.77
PRK04148	134	hypothetical protein; Provisional	98.77
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.76
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.75
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.75
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.75
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.74
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.73
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.72
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.7
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.7
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.7
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.68
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	98.65
PLN02823	336	spermine synthase	98.61
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	98.59
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.57
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	98.55
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.53
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.51
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	98.5
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.49
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.49
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.49
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.46
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	98.45
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.45
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.43
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.43
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.39
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.37
KOG1331	293	consensus Predicted methyltransferase [General fun	98.35
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.35
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.33
KOG2352	482	consensus Predicted spermine/spermidine synthase [	98.32
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.32
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	98.32
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.31
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.31
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	98.3
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.26
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.23
COG2520	341	Predicted methyltransferase [General function pred	98.22
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.19
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.19
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.18
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.16
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	98.16
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	98.14
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.13
PRK00536	262	speE spermidine synthase; Provisional	98.12
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.09
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	98.08
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.06
PF13679	141	Methyltransf_32: Methyltransferase domain	98.05
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.04
COG2521	287	Predicted archaeal methyltransferase [General func	97.96
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.95
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.93
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.87
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	97.85
COG2265	432	TrmA SAM-dependent methyltransferases related to t	97.85
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.84
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	97.83
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	97.76
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	97.71
KOG2730	263	consensus Methylase [General function prediction o	97.7
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.7
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	97.64
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	97.61
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	97.59
COG3897	218	Predicted methyltransferase [General function pred	97.59
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.51
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.48
COG4301	321	Uncharacterized conserved protein [Function unknow	97.47
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.47
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	97.43
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	97.41
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	97.37
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.34
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	97.32
KOG3201	201	consensus Uncharacterized conserved protein [Funct	97.3
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	97.21
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	97.2
COG4076	252	Predicted RNA methylase [General function predicti	97.19
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	97.19
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	97.09
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.05
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	96.99
COG4262	508	Predicted spermidine synthase with an N-terminal m	96.9
PRK10742	250	putative methyltransferase; Provisional	96.76
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	96.75
PRK11524	284	putative methyltransferase; Provisional	96.7
COG0286	489	HsdM Type I restriction-modification system methyl	96.65
PLN02668	386	indole-3-acetate carboxyl methyltransferase	96.61
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	96.61
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	96.58
KOG4058	199	consensus Uncharacterized conserved protein [Funct	96.55
PRK13699	227	putative methylase; Provisional	96.51
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	96.48
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	96.37
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	96.33
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	96.25
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	96.16
KOG3115	249	consensus Methyltransferase-like protein [General	96.0
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	95.96
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	95.88
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	95.87
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	95.77
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	95.72
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	95.69
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	95.57
PF03269	177	DUF268: Caenorhabditis protein of unknown function	95.53
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	95.44
KOG1227	351	consensus Putative methyltransferase [General func	95.38
KOG1501	636	consensus Arginine N-methyltransferase [General fu	95.28
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	95.27
COG3129	292	Predicted SAM-dependent methyltransferase [General	95.25
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	95.0
COG4798	238	Predicted methyltransferase [General function pred	94.96
PF03514	374	GRAS: GRAS domain family; InterPro: IPR005202 Sequ	94.94
PHA01634	156	hypothetical protein	94.93
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	94.87
KOG2671	421	consensus Putative RNA methylase [Replication, rec	94.83
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	94.79
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	94.45
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	94.41
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	94.22
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	93.89
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	93.88
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	93.77
PF04072	183	LCM: Leucine carboxyl methyltransferase; InterPro:	93.26
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	93.22
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	93.21
KOG2920	282	consensus Predicted methyltransferase [General fun	93.01
KOG1098	780	consensus Putative SAM-dependent rRNA methyltransf	92.97
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	92.58
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	92.25
KOG2539	491	consensus Mitochondrial/chloroplast ribosome small	92.18
PF12692	160	Methyltransf_17: S-adenosyl-L-methionine methyltra	91.1
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	90.98
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	90.88
COG3315	297	O-Methyltransferase involved in polyketide biosynt	90.7
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	90.56
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	90.22
COG1565	370	Uncharacterized conserved protein [Function unknow	90.14
KOG3924	419	consensus Putative protein methyltransferase invol	89.88
KOG2352	482	consensus Predicted spermine/spermidine synthase [	89.24
PTZ00357	1072	methyltransferase; Provisional	89.16
PF06016	1289	Reovirus_L2: Reovirus core-spike protein lambda-2	88.56
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	88.43
PRK03659	601	glutathione-regulated potassium-efflux system prot	88.22
KOG0821	326	consensus Predicted ribosomal RNA adenine dimethyl	88.12
PRK03562	621	glutathione-regulated potassium-efflux system prot	88.1
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	88.04
COG1255	129	Uncharacterized protein conserved in archaea [Func	87.56
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	86.16
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	85.96
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	85.93
TIGR00497	501	hsdM type I restriction system adenine methylase (	85.77
COG0863	302	DNA modification methylase [DNA replication, recom	85.77
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	85.34
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	84.8
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	84.5
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	83.96
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	83.75
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	83.38
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	83.31
PRK10669	558	putative cation:proton antiport protein; Provision	83.11
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	83.11
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	82.63
PLN02740	381	Alcohol dehydrogenase-like	82.6
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	82.43
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	82.37
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	82.19
PRK11524	284	putative methyltransferase; Provisional	81.91
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	81.84
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	81.55
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	81.54
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	81.46
KOG2078	495	consensus tRNA modification enzyme [RNA processing	81.35
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	81.12
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	80.6
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	80.1

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=100.00  E-value=7.9e-47  Score=323.24  Aligned_cols=230  Identities=39%  Similarity=0.719  Sum_probs=184.1

Q ss_pred             CCcccchh-hhhHhHHHHHHHHHhcC------CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHh--
Q 025775            6 IPRSELTH-HRLYEFAKTALIKIYSH------PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN--   76 (248)
Q Consensus         6 ~~r~~~~~-~~~~~~~~~~li~~~~~------~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~--   76 (248)
                      |..|.+.. +.++||||+.||+.+++      ++.+|||||||.|+++.+|...+++.++|+||+..+|++|++|+..  
T Consensus        30 R~~S~i~~lR~fNNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~  109 (331)
T PF03291_consen   30 RQESPIFHLRNFNNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLK  109 (331)
T ss_dssp             ----TCHHHHHHHHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHH
T ss_pred             hhhChhHHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhc
Confidence            33444444 55889999999999998      8999999999999999999999999999999999999999999932  


Q ss_pred             -------cCCCceEEEEEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775           77 -------QRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus        77 -------~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                             ....+.+.|+.+|+....+...+.....+||+|+|++++||+|++.+.++.+++++.+.|+|||+|++|+||+
T Consensus       110 ~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~  189 (331)
T PF03291_consen  110 KRNNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS  189 (331)
T ss_dssp             TSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred             cccccccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence                   1123568999999988776555543346999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhHhhhhCCCCCCCCCCCCCcccCceeEEEecccCCCCCcceeeeEEEEccCccCCCcceechHHHHHHHHH
Q 025775          150 STIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLARE  229 (248)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~  229 (248)
                      +.|.+++++....       .....|||+    +|+|+|+.+ +..|.||.+|.|+|++.+++++||||+++.|+++|++
T Consensus       190 ~~i~~~l~~~~~~-------~~~~~~gN~----~y~I~f~~~-~~~~~fG~~Y~F~L~~~v~~~~EYlV~~~~~~~la~e  257 (331)
T PF03291_consen  190 DEIVKRLREKKSN-------SEKKKFGNS----VYSIEFDSD-DFFPPFGAKYDFYLEDAVDDCPEYLVPFDFFVKLAKE  257 (331)
T ss_dssp             HHHHCCHHC-EEE-------CCCSCSETS----SEEEEESCC-SS--CTTEEEEEEETTCSSCEEEE---HHHHHHHHHH
T ss_pred             HHHHHHHHhhccc-------ccccccCCc----cEEEEeccc-CCCCCCCcEEEEEecCcCCCCceEEeeHHHHHHHHHH
Confidence            9998888752110       011356664    699999876 5788999999999999999999999999999999999


Q ss_pred             cCcEEEEecCchHHHhhc
Q 025775          230 AGLEYVEIQNLNEFYDDN  247 (248)
Q Consensus       230 ~G~~~v~~~~f~~~~~~~  247 (248)
                      +||++|+..+|.+||+++
T Consensus       258 yGLeLV~~~~F~ef~~e~  275 (331)
T PF03291_consen  258 YGLELVEKKNFHEFYEEE  275 (331)
T ss_dssp             TTEEEEEEEEHHHHHHHH
T ss_pred             cCCEEEEeCChHHHHHHh
Confidence            999999999999999964

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=100.00  E-value=9.3e-47  Score=310.00  Aligned_cols=226  Identities=36%  Similarity=0.600  Sum_probs=196.9

Q ss_pred             CCcccchh-hhhHhHHHHHHHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcC-----C
Q 025775            6 IPRSELTH-HRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR-----K   79 (248)
Q Consensus         6 ~~r~~~~~-~~~~~~~~~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~-----~   79 (248)
                      |++|.+-+ +.+|||||+.||+.+.+++..++|||||.|+++.+|-.++++.++|+||+..+|++|+.|++...     .
T Consensus        91 Rq~S~Ii~lRnfNNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~  170 (389)
T KOG1975|consen   91 RQRSPIIFLRNFNNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKF  170 (389)
T ss_pred             hccCceeehhhhhHHHHHHHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcc
Confidence            44455544 55899999999999999999999999999999999999999999999999999999999997632     2


Q ss_pred             CceEEEEEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHHHh
Q 025775           80 NFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKN  159 (248)
Q Consensus        80 ~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~  159 (248)
                      .+.+.|+.+|++...+...++.++.+||+|+|+|++||+|++.+.++.++.|+.++|+|||+||+|+||++.|+.++++.
T Consensus       171 ~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~  250 (389)
T KOG1975|consen  171 IFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAG  250 (389)
T ss_pred             cceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhc
Confidence            34589999999987776665545556999999999999999999999999999999999999999999999999999863


Q ss_pred             HhhhhCCCCCCCCCCCCCcccCceeEEEecccC---CCCCcceeeeEEEEccCccCCCcceechHHHHHHHHHcCcEEEE
Q 025775          160 VEAYHNRSSSMKPNLVPNCIRSESYVITFEVEE---EKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVE  236 (248)
Q Consensus       160 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~G~~~v~  236 (248)
                            .     ...|||+    +|+|+|+.+.   ...|+||.+|.|+|++.+. ||||+|+++.|+.++++.||+||.
T Consensus       251 ------e-----~~~~gNd----iykv~y~~~~~k~~~~p~fG~kY~F~LedaVd-cPEylV~F~~l~~lae~y~LeLv~  314 (389)
T KOG1975|consen  251 ------E-----VERFGND----IYKVTYEIEFQKEFDVPPFGAKYRFHLEDAVD-CPEYLVPFPTLVSLAEEYGLELVF  314 (389)
T ss_pred             ------c-----chhhcce----eeeEeeeeecccccCCCCccceEEEEcccccC-CcceeeehHHHHHHHHhcCcEEEE
Confidence                  0     1368886    5888876432   1279999999999999875 999999999999999999999999


Q ss_pred             ecCchHHHhhc
Q 025775          237 IQNLNEFYDDN  247 (248)
Q Consensus       237 ~~~f~~~~~~~  247 (248)
                      .++|.+||++.
T Consensus       315 ~k~F~df~~e~  325 (389)
T KOG1975|consen  315 VKPFADFYEEE  325 (389)
T ss_pred             eccHHHHHHHh
Confidence            99999999875

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.90  E-value=2.7e-23  Score=170.65  Aligned_cols=175  Identities=25%  Similarity=0.346  Sum_probs=85.2

Q ss_pred             HHHHHh-cCCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhh
Q 025775           23 ALIKIY-SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM   99 (248)
Q Consensus        23 ~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   99 (248)
                      .+++.. ..++.+|||+|||||..+..++..  +.++|+|+|+|+.|++.|+++....+.. +++++++|+.+.++    
T Consensus        38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~----  112 (233)
T PF01209_consen   38 KLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPF----  112 (233)
T ss_dssp             HHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S----
T ss_pred             HHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcC----
Confidence            444443 457899999999999988888765  3359999999999999999998765432 69999999988887    


Q ss_pred             cccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE---ecChhHHHHHHH---HhHhhhhCCCCCCCCC
Q 025775          100 QEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI---TPDSSTIWAKYQ---KNVEAYHNRSSSMKPN  173 (248)
Q Consensus       100 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~---~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  173 (248)
                        ++++||+|+|.+++|.+    ++...++++++++|||||.+++.   .|....+...+.   +.+.|+.         
T Consensus       113 --~d~sfD~v~~~fglrn~----~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~---------  177 (233)
T PF01209_consen  113 --PDNSFDAVTCSFGLRNF----PDRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYILPLI---------  177 (233)
T ss_dssp             ---TT-EEEEEEES-GGG-----SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH------------------
T ss_pred             --CCCceeEEEHHhhHHhh----CCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeeccccccc---------
Confidence              57999999999999973    24778999999999999999877   444333322221   1111110         


Q ss_pred             CCCCcccCceeEEEecccCCCCCcceeeeEEEEccCccCCCcceechHHHHHHHHHcCcEEEEecCc
Q 025775          174 LVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL  240 (248)
Q Consensus       174 ~~g~~~~~~~~~~~~~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~G~~~v~~~~f  240 (248)
                        |.        +        +..-...|.| |.+++.    .+++.+.+.++++++||+.+...++
T Consensus       178 --g~--------l--------~~~~~~~Y~y-L~~Si~----~f~~~~~~~~~l~~~Gf~~v~~~~~  221 (233)
T PF01209_consen  178 --GR--------L--------LSGDREAYRY-LPESIR----RFPSPEELKELLEEAGFKNVEYRPL  221 (233)
T ss_dssp             -------------------------------------------------------------------
T ss_pred             --cc--------c--------cccccccccc-cccccc----ccccccccccccccccccccccccc
Confidence              00        0        0000123554 666653    3678999999999999998876654

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.89  E-value=6.2e-23  Score=167.21  Aligned_cols=176  Identities=24%  Similarity=0.331  Sum_probs=129.6

Q ss_pred             HHHHHHHh-cCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh
Q 025775           21 KTALIKIY-SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ   98 (248)
Q Consensus        21 ~~~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   98 (248)
                      +..++... ..+|.+|||+|||||..+..++.. +.++++|+|+|+.||+.|+++....+... ++|+++|+.+.++   
T Consensus        40 r~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf---  115 (238)
T COG2226          40 RRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPF---  115 (238)
T ss_pred             HHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCCC---
Confidence            44555554 447999999999999999999876 55699999999999999999998765433 9999999999888   


Q ss_pred             hcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE---ecChhHHHHHHHHh----HhhhhCCCCCCC
Q 025775           99 MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI---TPDSSTIWAKYQKN----VEAYHNRSSSMK  171 (248)
Q Consensus        99 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~  171 (248)
                         ++++||+|++.++++++    .+.+.+|+++.|+|||||.+++.   .|....+...+..-    +.|.        
T Consensus       116 ---~D~sFD~vt~~fglrnv----~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~--------  180 (238)
T COG2226         116 ---PDNSFDAVTISFGLRNV----TDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPL--------  180 (238)
T ss_pred             ---CCCccCEEEeeehhhcC----CCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhh--------
Confidence               68999999999999983    36899999999999999998887   33333343333321    2221        


Q ss_pred             CCCCCCcccCceeEEEecccCCCCCcceeeeEEEEccCccCCCcceechHHHHHHHHHcCcEEEEecC
Q 025775          172 PNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQN  239 (248)
Q Consensus       172 ~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~G~~~v~~~~  239 (248)
                         +|.-       +..         -...|.| |.+++    +-+.+.+.|.+++++.||+.+...+
T Consensus       181 ---~g~~-------~~~---------~~~~y~y-L~eSi----~~~p~~~~l~~~~~~~gf~~i~~~~  224 (238)
T COG2226         181 ---IGKL-------VAK---------DAEAYEY-LAESI----RRFPDQEELKQMIEKAGFEEVRYEN  224 (238)
T ss_pred             ---hcee-------eec---------ChHHHHH-HHHHH----HhCCCHHHHHHHHHhcCceEEeeEe
Confidence               1110       000         0112333 55554    3467899999999999999887443

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.83  E-value=7.4e-20  Score=156.64  Aligned_cols=161  Identities=16%  Similarity=0.213  Sum_probs=113.6

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      ++.+|||||||+|..+..++..+. +|+|+|+++.|++.|+.+........++.++++|+.+.++      .+++||+|+
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~------~~~~FD~Vi  203 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD------EGRKFDAVL  203 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh------ccCCCCEEE
Confidence            567999999999999888876554 8999999999999999876543322358899998755433      357899999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHHHhHhhhhCCCCCCCCCCCCCcccCceeEEEecc
Q 025775          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEV  190 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  190 (248)
                      |..+++++-    +...+++++.++|||||.+++++++.....  +...+              .+.     .|...+  
T Consensus       204 ~~~vLeHv~----d~~~~L~~l~r~LkPGG~liist~nr~~~~--~~~~i--------------~~~-----eyi~~~--  256 (322)
T PLN02396        204 SLEVIEHVA----NPAEFCKSLSALTIPNGATVLSTINRTMRA--YASTI--------------VGA-----EYILRW--  256 (322)
T ss_pred             EhhHHHhcC----CHHHHHHHHHHHcCCCcEEEEEECCcCHHH--HHHhh--------------hhH-----HHHHhc--
Confidence            999998832    356899999999999999999988864321  10000              000     000000  


Q ss_pred             cCCCCCcceeeeEEEEccCccCCCcceechHHHHHHHHHcCcEEEEecCch
Q 025775          191 EEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLN  241 (248)
Q Consensus       191 ~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~G~~~v~~~~f~  241 (248)
                          .+. |           ......+++++++.++++++||++++...+.
T Consensus       257 ----lp~-g-----------th~~~~f~tp~eL~~lL~~aGf~i~~~~G~~  291 (322)
T PLN02396        257 ----LPK-G-----------THQWSSFVTPEELSMILQRASVDVKEMAGFV  291 (322)
T ss_pred             ----CCC-C-----------CcCccCCCCHHHHHHHHHHcCCeEEEEeeeE
Confidence                000 1           1111236799999999999999999887653

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.81  E-value=4.1e-19  Score=142.92  Aligned_cols=170  Identities=16%  Similarity=0.234  Sum_probs=124.4

Q ss_pred             HHHHHHHhcC-CCCeEEEEcCCCCccHhHHHHc-C------CCeEEEEeCChHHHHHHHHHHHhcCCCc--eEEEEEcCC
Q 025775           21 KTALIKIYSH-PYVTVCDLYCGAGVDVDKWETA-L------IANYIGIDVATSGIGEARDTWENQRKNF--IAEFFEADP   90 (248)
Q Consensus        21 ~~~li~~~~~-~~~~VLDlGcG~G~~~~~l~~~-~------~~~v~giDis~~~l~~a~~~~~~~~~~~--~~~~~~~d~   90 (248)
                      |..++...-+ ++.+|||+|||||..+..+... +      .++|+.+|||++||+.+++|....+...  .+.++++|+
T Consensus        89 Kd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dA  168 (296)
T KOG1540|consen   89 KDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDA  168 (296)
T ss_pred             HHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCc
Confidence            4444444433 6789999999999999888765 2      2589999999999999999986544322  388999999


Q ss_pred             CCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh-h--HHHHHHHHhHhhhhCCC
Q 025775           91 CAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS-S--TIWAKYQKNVEAYHNRS  167 (248)
Q Consensus        91 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~-~--~~~~~~~~~~~~~~~~~  167 (248)
                      .+.++      ++.+||..++.+++.++    .++++.+++++|+|||||+|.+.-.+. +  .+...+.+         
T Consensus       169 E~LpF------dd~s~D~yTiafGIRN~----th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~---------  229 (296)
T KOG1540|consen  169 EDLPF------DDDSFDAYTIAFGIRNV----THIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQ---------  229 (296)
T ss_pred             ccCCC------CCCcceeEEEecceecC----CCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHh---------
Confidence            99888      58899999999988873    348899999999999999999873333 2  33333321         


Q ss_pred             CCCCCCCCCCcccCceeEEEecccCCCCCccee-------eeEEEEccCccCCCcceechHHHHHHHHHcCcEEEE
Q 025775          168 SSMKPNLVPNCIRSESYVITFEVEEEKFPLFGK-------KYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVE  236 (248)
Q Consensus       168 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~-------~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~G~~~v~  236 (248)
                                      |+.      +.+|..|.       .|.| |.+++.    -+.+.++|..+++++||..+.
T Consensus       230 ----------------ysf------~VlpvlG~~iagd~~sYqY-LveSI~----rfp~qe~f~~miedaGF~~~~  278 (296)
T KOG1540|consen  230 ----------------YSF------DVLPVLGEIIAGDRKSYQY-LVESIR----RFPPQEEFASMIEDAGFSSVN  278 (296)
T ss_pred             ----------------hhh------hhhchhhHhhhhhHhhhhh-HHhhhh----cCCCHHHHHHHHHHcCCcccc
Confidence                            111      12333332       3444 555553    356889999999999999886

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.81  E-value=2.5e-20  Score=149.69  Aligned_cols=179  Identities=19%  Similarity=0.266  Sum_probs=124.5

Q ss_pred             cchhhhhH----hHHHHHHHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEE
Q 025775           10 ELTHHRLY----EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEF   85 (248)
Q Consensus        10 ~~~~~~~~----~~~~~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~   85 (248)
                      ..|.+++|    +|++...-..+--++.+|||+|||-|.++..+++.+. .|+|+|+++.+|+.|+.+....+.  .+++
T Consensus        34 f~~LH~~N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv--~i~y  110 (243)
T COG2227          34 FKPLHKINPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGV--NIDY  110 (243)
T ss_pred             eeeeeeeccchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccc--cccc
Confidence            34444444    3444444333334899999999999999999998885 999999999999999998877662  2446


Q ss_pred             EEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHHHhHhhhhC
Q 025775           86 FEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHN  165 (248)
Q Consensus        86 ~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~  165 (248)
                      .+..+.+  +.    ...++||+|+|..+++|    .++...++.++.+++||||+++++++|.......+. .+     
T Consensus       111 ~~~~~ed--l~----~~~~~FDvV~cmEVlEH----v~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~-i~-----  174 (243)
T COG2227         111 RQATVED--LA----SAGGQFDVVTCMEVLEH----VPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLA-II-----  174 (243)
T ss_pred             hhhhHHH--HH----hcCCCccEEEEhhHHHc----cCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHH-HH-----
Confidence            5555422  21    12479999999998877    444677999999999999999999999644332221 11     


Q ss_pred             CCCCCCCCCCCCcccCceeEEEecccCCCCCcceeeeEEEEccCccCCCcceechHHHHHHHHHcCcEEEEecCc
Q 025775          166 RSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL  240 (248)
Q Consensus       166 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~G~~~v~~~~f  240 (248)
                                                       +.+|...+-...++....++.++++...+...|+++....++
T Consensus       175 ---------------------------------~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~~~g~  216 (243)
T COG2227         175 ---------------------------------GAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIIDRKGL  216 (243)
T ss_pred             ---------------------------------HHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEeecce
Confidence                                             111111111122334456788999999999899998877663

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.80  E-value=5.3e-19  Score=129.14  Aligned_cols=108  Identities=27%  Similarity=0.349  Sum_probs=89.0

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCC-CCCchhhhhcccCCceeE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADP-CAENFETQMQEKANQADL  108 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~~~~fD~  108 (248)
                      |+.+|||||||+|..+..+++. +..+++|+|+|+.|++.|+++....+...++.++++|+ ....       ...+||+
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-------~~~~~D~   73 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD-------FLEPFDL   73 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT-------TSSCEEE
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc-------cCCCCCE
Confidence            6889999999999999999883 55599999999999999999985555556799999998 2222       2567999


Q ss_pred             EEecc-chhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775          109 VCCFQ-HLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       109 V~~~~-~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      |++.. .++.++. .+....+++++.+.|+|||++++..
T Consensus        74 v~~~~~~~~~~~~-~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   74 VICSGFTLHFLLP-LDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             EEECSGSGGGCCH-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEECCCccccccc-hhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            99998 5664333 3778999999999999999999875

...

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.80  E-value=1.9e-18  Score=144.81  Aligned_cols=110  Identities=19%  Similarity=0.151  Sum_probs=88.3

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc-C-CCeEEEEeCChHHHHHHHHHHHh--cCCCceEEEEEcCCCCCchhhhhcccCC
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWEN--QRKNFIAEFFEADPCAENFETQMQEKAN  104 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~-~-~~~v~giDis~~~l~~a~~~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~~~  104 (248)
                      ..++.+|||+|||+|..+..++.. + .++++|+|+|++|++.|+++...  .....++.++++|+.+.++      +++
T Consensus        71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~------~~~  144 (261)
T PLN02233         71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPF------DDC  144 (261)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCC------CCC
Confidence            347889999999999988777664 3 35899999999999999877542  1112348899999987766      467


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      +||+|++.+++|++    ++...+++++.++|||||.+++....
T Consensus       145 sfD~V~~~~~l~~~----~d~~~~l~ei~rvLkpGG~l~i~d~~  184 (261)
T PLN02233        145 YFDAITMGYGLRNV----VDRLKAMQEMYRVLKPGSRVSILDFN  184 (261)
T ss_pred             CEeEEEEecccccC----CCHHHHHHHHHHHcCcCcEEEEEECC
Confidence            99999999999873    24778999999999999999888443

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.79  E-value=1.3e-18  Score=145.42  Aligned_cols=118  Identities=19%  Similarity=0.160  Sum_probs=94.4

Q ss_pred             HHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccC
Q 025775           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA  103 (248)
Q Consensus        24 li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  103 (248)
                      +++....++.+|||+|||+|..+..++..+. +|+|+|+|+.|++.|+++....+...++.++++|+.+...  .   .+
T Consensus        37 ~l~~l~~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~--~---~~  110 (255)
T PRK11036         37 LLAELPPRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQ--H---LE  110 (255)
T ss_pred             HHHhcCCCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhh--h---cC
Confidence            4444445678999999999999999988764 8999999999999999988765544458899998855321  1   35


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhH
Q 025775          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST  151 (248)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~  151 (248)
                      ++||+|+|..++|++    ++...+++++.++|||||++++.+.+...
T Consensus       111 ~~fD~V~~~~vl~~~----~~~~~~l~~~~~~LkpgG~l~i~~~n~~~  154 (255)
T PRK11036        111 TPVDLILFHAVLEWV----ADPKSVLQTLWSVLRPGGALSLMFYNANG  154 (255)
T ss_pred             CCCCEEEehhHHHhh----CCHHHHHHHHHHHcCCCeEEEEEEECccH
Confidence            789999999999873    23567899999999999999998877654

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.78  E-value=6.5e-18  Score=140.27  Aligned_cols=160  Identities=21%  Similarity=0.273  Sum_probs=125.8

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      +.||.+|||||||+|.++..++..-..+|+|+++|+++.+.+++++...+...++++.-.|..+  +       .++||.
T Consensus        70 L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd--~-------~e~fDr  140 (283)
T COG2230          70 LKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRD--F-------EEPFDR  140 (283)
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccc--c-------ccccce
Confidence            5699999999999999999998875459999999999999999999888766678888888744  2       456999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHHHhHhhhhCCCCCCCCCCCCCcccCceeEEEe
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITF  188 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  188 (248)
                      |++..+++|  ...+....+++.+.++|+|||.+++.+.....-.                              +.   
T Consensus       141 IvSvgmfEh--vg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~------------------------------~~---  185 (283)
T COG2230         141 IVSVGMFEH--VGKENYDDFFKKVYALLKPGGRMLLHSITGPDQE------------------------------FR---  185 (283)
T ss_pred             eeehhhHHH--hCcccHHHHHHHHHhhcCCCceEEEEEecCCCcc------------------------------cc---
Confidence            999999988  5677799999999999999999988743321000                              00   


Q ss_pred             cccCCCCCcceeeeEEEEccCccCCCcceechHHHHHHHHHcCcEEEEecCchHHHh
Q 025775          189 EVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYD  245 (248)
Q Consensus       189 ~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~G~~~v~~~~f~~~~~  245 (248)
                           ..+.|-.+|.|        +..++.+.+.+.+.++++||.+.....|..-|.
T Consensus       186 -----~~~~~i~~yiF--------PgG~lPs~~~i~~~~~~~~~~v~~~~~~~~hYa  229 (283)
T COG2230         186 -----RFPDFIDKYIF--------PGGELPSISEILELASEAGFVVLDVESLRPHYA  229 (283)
T ss_pred             -----cchHHHHHhCC--------CCCcCCCHHHHHHHHHhcCcEEehHhhhcHHHH
Confidence                 12345556666        223577888999999999999998888877664

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.78  E-value=1.2e-17  Score=140.09  Aligned_cols=108  Identities=19%  Similarity=0.201  Sum_probs=89.5

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      +.++.+|||||||+|..+..++.....+|+|+|+|+.|++.|+++....   .++.+.++|+...++      ++++||+
T Consensus        50 l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~---~~i~~~~~D~~~~~~------~~~~FD~  120 (263)
T PTZ00098         50 LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK---NKIEFEANDILKKDF------PENTFDM  120 (263)
T ss_pred             CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcC---CceEEEECCcccCCC------CCCCeEE
Confidence            5688999999999999888886653349999999999999999876542   348899999876655      4679999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      |++..++++  .+.++...+++++.++|||||.++++.+
T Consensus       121 V~s~~~l~h--~~~~d~~~~l~~i~r~LkPGG~lvi~d~  157 (263)
T PTZ00098        121 IYSRDAILH--LSYADKKKLFEKCYKWLKPNGILLITDY  157 (263)
T ss_pred             EEEhhhHHh--CCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            999887766  3556788999999999999999998744

>PLN02244 tocopherol O-methyltransferase

Probab=99.78  E-value=2.5e-17  Score=142.96  Aligned_cols=108  Identities=22%  Similarity=0.251  Sum_probs=90.9

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      .++.+|||||||+|..+..++.....+|+|+|+|+.|++.|+++....+...++.++++|+.+.++      .+++||+|
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~------~~~~FD~V  190 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPF------EDGQFDLV  190 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCC------CCCCccEE
Confidence            467899999999999998887764449999999999999999887765544568999999987666      46899999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      ++..++|++    .+...+++++.++|||||.+++...
T Consensus       191 ~s~~~~~h~----~d~~~~l~e~~rvLkpGG~lvi~~~  224 (340)
T PLN02244        191 WSMESGEHM----PDKRKFVQELARVAAPGGRIIIVTW  224 (340)
T ss_pred             EECCchhcc----CCHHHHHHHHHHHcCCCcEEEEEEe
Confidence            999988873    3467899999999999999998754

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.76  E-value=4.3e-18  Score=120.09  Aligned_cols=95  Identities=26%  Similarity=0.351  Sum_probs=81.8

Q ss_pred             EEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEeccch
Q 025775           36 CDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHL  115 (248)
Q Consensus        36 LDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l  115 (248)
                      ||+|||+|..+..++..+..+++|+|+++.+++.++++....+    +.+.++|+.+.++      ++++||+|++..++
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~----~~~~~~d~~~l~~------~~~sfD~v~~~~~~   70 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEG----VSFRQGDAEDLPF------PDNSFDVVFSNSVL   70 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTST----EEEEESBTTSSSS-------TT-EEEEEEESHG
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccC----chheeehHHhCcc------ccccccccccccce
Confidence            8999999999999988856699999999999999999876654    6699999988877      57899999999999


Q ss_pred             hhhcCCHHHHHHHHHHHhccccCCcEEEE
Q 025775          116 QMCFETEERARRLLQNVSSLLKPGGYFLG  144 (248)
Q Consensus       116 ~~~~~~~~~~~~~l~~~~~~LkpgG~~i~  144 (248)
                      |++    ++...+++++.++|||||.+++
T Consensus        71 ~~~----~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   71 HHL----EDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             GGS----SHHHHHHHHHHHHEEEEEEEEE
T ss_pred             eec----cCHHHHHHHHHHHcCcCeEEeC
Confidence            984    6789999999999999999985

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.74  E-value=3.2e-17  Score=127.02  Aligned_cols=100  Identities=26%  Similarity=0.417  Sum_probs=79.4

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      ..++.+|||+|||+|.++..+...+. +++|+|+++.+++.       ..    ......+......      .+++||+
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~-------~~----~~~~~~~~~~~~~------~~~~fD~   81 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK-------RN----VVFDNFDAQDPPF------PDGSFDL   81 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH-------TT----SEEEEEECHTHHC------HSSSEEE
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh-------hh----hhhhhhhhhhhhc------cccchhh
Confidence            46789999999999999999977777 99999999999987       11    2222222212122      4689999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChh
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~  150 (248)
                      |+|..++|++-    +...+++++.++|||||++++++++..
T Consensus        82 i~~~~~l~~~~----d~~~~l~~l~~~LkpgG~l~~~~~~~~  119 (161)
T PF13489_consen   82 IICNDVLEHLP----DPEEFLKELSRLLKPGGYLVISDPNRD  119 (161)
T ss_dssp             EEEESSGGGSS----HHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred             HhhHHHHhhcc----cHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence            99999999832    588999999999999999999988863

...

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.74  E-value=4.8e-17  Score=135.33  Aligned_cols=112  Identities=21%  Similarity=0.236  Sum_probs=91.7

Q ss_pred             HHHHhcCCCCeEEEEcCCCCccHhHHHHc---CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhc
Q 025775           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ  100 (248)
Q Consensus        24 li~~~~~~~~~VLDlGcG~G~~~~~l~~~---~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  100 (248)
                      ++....+++.+|||+|||+|..+..++..   +..+++|+|+|+.|++.|+++....+...++.++++|+.+.++     
T Consensus        49 ~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~-----  123 (247)
T PRK15451         49 LAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-----  123 (247)
T ss_pred             HHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-----
Confidence            34455678899999999999988777652   3459999999999999999998765544468999999865433     


Q ss_pred             ccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       101 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                         ..+|+|++.+++|+  .+.+....+++++.+.|+|||.|+++
T Consensus       124 ---~~~D~vv~~~~l~~--l~~~~~~~~l~~i~~~LkpGG~l~l~  163 (247)
T PRK15451        124 ---ENASMVVLNFTLQF--LEPSERQALLDKIYQGLNPGGALVLS  163 (247)
T ss_pred             ---CCCCEEehhhHHHh--CCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence               35899999999997  44666789999999999999999987

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.74  E-value=1.1e-17  Score=137.87  Aligned_cols=118  Identities=18%  Similarity=0.228  Sum_probs=91.4

Q ss_pred             hHHHHHHHHHh-cCCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCc
Q 025775           18 EFAKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN   94 (248)
Q Consensus        18 ~~~~~~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~   94 (248)
                      .|.+ .+++.. ..++.+|||+|||+|..+..++..  +..+++|+|+|+.+++.|+++....+. .++.++++|+...+
T Consensus        32 ~~~~-~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~  109 (231)
T TIGR02752        32 KWRK-DTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELP  109 (231)
T ss_pred             HHHH-HHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCC
Confidence            4443 333433 457889999999999998888765  235899999999999999988765432 35889999987655


Q ss_pred             hhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775           95 FETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus        95 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      +      .+++||+|++.+++|+.    ++...+++++.++|+|||.+++..+
T Consensus       110 ~------~~~~fD~V~~~~~l~~~----~~~~~~l~~~~~~Lk~gG~l~~~~~  152 (231)
T TIGR02752       110 F------DDNSFDYVTIGFGLRNV----PDYMQVLREMYRVVKPGGKVVCLET  152 (231)
T ss_pred             C------CCCCccEEEEecccccC----CCHHHHHHHHHHHcCcCeEEEEEEC
Confidence            4      36789999999888762    2356889999999999999988743

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.73  E-value=9.1e-18  Score=135.96  Aligned_cols=169  Identities=17%  Similarity=0.223  Sum_probs=119.3

Q ss_pred             hHHHHHHHHHh--cCCC------CeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcC-----CCceEE
Q 025775           18 EFAKTALIKIY--SHPY------VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR-----KNFIAE   84 (248)
Q Consensus        18 ~~~~~~li~~~--~~~~------~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~-----~~~~~~   84 (248)
                      .|+..-+....  ..|+      .+|||+|||+|-++..+++.+. +|+|+|+++.|++.|+.+.....     ..++++
T Consensus        68 ~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~  146 (282)
T KOG1270|consen   68 PFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLE  146 (282)
T ss_pred             hHHHHHHHhcccccCCCccccCCceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeee
Confidence            45555555555  2344      7899999999999999988886 99999999999999998743322     223456


Q ss_pred             EEEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHHHhHhhhh
Q 025775           85 FFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYH  164 (248)
Q Consensus        85 ~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~  164 (248)
                      +.+.|+..         ..+.||+|+|..+++|    ..+..+++..+.+.|||||.+++++.+..-+...         
T Consensus       147 ~~~~~~E~---------~~~~fDaVvcsevleH----V~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~---------  204 (282)
T KOG1270|consen  147 YEDTDVEG---------LTGKFDAVVCSEVLEH----VKDPQEFLNCLSALLKPNGRLFITTINRTILSFA---------  204 (282)
T ss_pred             hhhcchhh---------cccccceeeeHHHHHH----HhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhh---------
Confidence            66666533         2456999999998887    5668899999999999999999998886544211         


Q ss_pred             CCCCCCCCCCCCCcccCceeEEEecccCCCCCcceeeeEEEEccCccCCCcceechHHHHHHHHHcCcEEEEecC
Q 025775          165 NRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQN  239 (248)
Q Consensus       165 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~G~~~v~~~~  239 (248)
                                 ++-+                   ..+|.-.+....++..|.+++++.+..++++.|+.+....+
T Consensus       205 -----------~~i~-------------------~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v~~v~G  249 (282)
T KOG1270|consen  205 -----------GTIF-------------------LAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQVNDVVG  249 (282)
T ss_pred             -----------cccc-------------------HHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcchhhhhc
Confidence                       1100                   00010011112334566789999999999999888765544

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.71  E-value=2.1e-16  Score=132.67  Aligned_cols=163  Identities=21%  Similarity=0.223  Sum_probs=109.8

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      ++||.+|||||||.|+.+..++.. +. +|+|+.+|++..+.++++....+...++.+..+|..+  +       +.+||
T Consensus        60 l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~--~-------~~~fD  129 (273)
T PF02353_consen   60 LKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD--L-------PGKFD  129 (273)
T ss_dssp             --TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------------S-S
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc--c-------CCCCC
Confidence            569999999999999999999888 55 9999999999999999999888776778999988643  2       45999


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHHHhHhhhhCCCCCCCCCCCCCcccCceeEEE
Q 025775          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVIT  187 (248)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  187 (248)
                      .|++..++.+  ...+....+++++.+.|+|||.+++.......-......        .                    
T Consensus       130 ~IvSi~~~Eh--vg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~--------~--------------------  179 (273)
T PF02353_consen  130 RIVSIEMFEH--VGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAER--------R--------------------  179 (273)
T ss_dssp             EEEEESEGGG--TCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCT--------T--------------------
T ss_pred             EEEEEechhh--cChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhc--------C--------------------
Confidence            9999988776  345678899999999999999998773333211111000        0                    


Q ss_pred             ecccCCCCCcceeeeEEEEccCccCCCcceechHHHHHHHHHcCcEEEEecCchHHHh
Q 025775          188 FEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYD  245 (248)
Q Consensus       188 ~~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~G~~~v~~~~f~~~~~  245 (248)
                            .-..|-.+|.|        +..++++.+.+...+++.||++....++..-|.
T Consensus       180 ------~~~~~i~kyiF--------Pgg~lps~~~~~~~~~~~~l~v~~~~~~~~hY~  223 (273)
T PF02353_consen  180 ------SSSDFIRKYIF--------PGGYLPSLSEILRAAEDAGLEVEDVENLGRHYA  223 (273)
T ss_dssp             ------CCCHHHHHHTS--------TTS---BHHHHHHHHHHTT-EEEEEEE-HHHHH
T ss_pred             ------CCceEEEEeeC--------CCCCCCCHHHHHHHHhcCCEEEEEEEEcCcCHH
Confidence                  00012223333        122567888999999999999998888776664

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.71  E-value=2.8e-16  Score=135.28  Aligned_cols=105  Identities=19%  Similarity=0.098  Sum_probs=83.5

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      ++.+|||||||+|.++..++..+...|+|+|+|+.++.+++......+...++.++.+|+.+.++       +++||+|+
T Consensus       122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-------~~~FD~V~  194 (322)
T PRK15068        122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-------LKAFDTVF  194 (322)
T ss_pred             CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-------cCCcCEEE
Confidence            67899999999999999998887778999999999998765433221112348899998865443       56899999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      |..++||.    .+...+++++++.|+|||.+++..
T Consensus       195 s~~vl~H~----~dp~~~L~~l~~~LkpGG~lvl~~  226 (322)
T PRK15068        195 SMGVLYHR----RSPLDHLKQLKDQLVPGGELVLET  226 (322)
T ss_pred             ECChhhcc----CCHHHHHHHHHHhcCCCcEEEEEE
Confidence            99988873    346789999999999999999873

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.71  E-value=1.4e-16  Score=122.96  Aligned_cols=117  Identities=21%  Similarity=0.298  Sum_probs=92.0

Q ss_pred             CCCeEEEEcCCCCccHhHHHH-c-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           31 PYVTVCDLYCGAGVDVDKWET-A-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~-~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      ++.+|||+|||+|..+..++. . +..+++|+|+|+.|++.|+.+....+.. +++|.++|+.+.+-  .+   .+.||+
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~--~~---~~~~D~   76 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQ--EL---EEKFDI   76 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCG--CS---STTEEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhcccc--cc---CCCeeE
Confidence            578999999999999999984 3 3469999999999999999988766543 69999999977331  00   278999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh-hHHHHHHH
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS-STIWAKYQ  157 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~-~~~~~~~~  157 (248)
                      |++..++|+    ..+...+++++.+.|++||.+++..+.. ..+.+.+.
T Consensus        77 I~~~~~l~~----~~~~~~~l~~~~~~lk~~G~~i~~~~~~~~~~~~~~~  122 (152)
T PF13847_consen   77 IISNGVLHH----FPDPEKVLKNIIRLLKPGGILIISDPNHNDELPEQLE  122 (152)
T ss_dssp             EEEESTGGG----TSHHHHHHHHHHHHEEEEEEEEEEEEEHSHHHHHHHH
T ss_pred             EEEcCchhh----ccCHHHHHHHHHHHcCCCcEEEEEECChHHHHHHHHH
Confidence            999998876    3346788999999999999999997773 33333433

...

>PRK05785 hypothetical protein; Provisional

Probab=99.71  E-value=5.3e-17  Score=133.19  Aligned_cols=102  Identities=13%  Similarity=0.113  Sum_probs=79.8

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      ..++.+|||+|||||..+..++.....+++|+|+|++|++.|+++         ..++++|+.+.++      ++++||+
T Consensus        49 ~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp~------~d~sfD~  113 (226)
T PRK05785         49 CGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA---------DDKVVGSFEALPF------RDKSFDV  113 (226)
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc---------cceEEechhhCCC------CCCCEEE
Confidence            346789999999999988888766334899999999999998764         2357888877666      5789999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCc-EEEEEecCh
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGG-YFLGITPDS  149 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG-~~i~~~~~~  149 (248)
                      |++.+++|+    .++.+.+++++.++|||.+ ++-+..|+.
T Consensus       114 v~~~~~l~~----~~d~~~~l~e~~RvLkp~~~ile~~~p~~  151 (226)
T PRK05785        114 VMSSFALHA----SDNIEKVIAEFTRVSRKQVGFIAMGKPDN  151 (226)
T ss_pred             EEecChhhc----cCCHHHHHHHHHHHhcCceEEEEeCCCCc
Confidence            999999987    3357889999999999954 333334543

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.70  E-value=1.6e-16  Score=127.70  Aligned_cols=104  Identities=18%  Similarity=0.144  Sum_probs=86.4

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      ++.+|||+|||+|..+..++..+. +|+|+|+|+.|++.++++....+. .++.+.++|+.+.++       +++||+|+
T Consensus        30 ~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~~~-------~~~fD~I~  100 (197)
T PRK11207         30 KPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENL-DNLHTAVVDLNNLTF-------DGEYDFIL  100 (197)
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCC-CcceEEecChhhCCc-------CCCcCEEE
Confidence            568999999999999999988765 999999999999999987766543 237788888865443       45799999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      |..++|+  .+.+....+++++.++|+|||.+++.
T Consensus       101 ~~~~~~~--~~~~~~~~~l~~i~~~LkpgG~~~~~  133 (197)
T PRK11207        101 STVVLMF--LEAKTIPGLIANMQRCTKPGGYNLIV  133 (197)
T ss_pred             Eecchhh--CCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            9999886  46778899999999999999996553

>TIGR00740 methyltransferase, putative

Probab=99.70  E-value=4e-16  Score=129.18  Aligned_cols=113  Identities=21%  Similarity=0.219  Sum_probs=92.4

Q ss_pred             HHHHhcCCCCeEEEEcCCCCccHhHHHHc---CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhc
Q 025775           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ  100 (248)
Q Consensus        24 li~~~~~~~~~VLDlGcG~G~~~~~l~~~---~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  100 (248)
                      +......++.+|||+|||+|..+..++..   +..+++|+|+|+.|++.|+++....+...++.++++|+.+.++     
T Consensus        46 l~~~~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----  120 (239)
T TIGR00740        46 LAERFVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-----  120 (239)
T ss_pred             HHHHhCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC-----
Confidence            44455668889999999999988888764   3458999999999999999987664433458899999866443     


Q ss_pred             ccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775          101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       101 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                         ..+|+|++.+++|+  .+.++...+++++.++|+|||.+++..
T Consensus       121 ---~~~d~v~~~~~l~~--~~~~~~~~~l~~i~~~LkpgG~l~i~d  161 (239)
T TIGR00740       121 ---KNASMVILNFTLQF--LPPEDRIALLTKIYEGLNPNGVLVLSE  161 (239)
T ss_pred             ---CCCCEEeeecchhh--CCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence               35899999999998  456678899999999999999999983

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>TIGR00452 methyltransferase, putative

Probab=99.70  E-value=6.6e-16  Score=131.81  Aligned_cols=107  Identities=15%  Similarity=0.005  Sum_probs=81.4

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      .++.+|||+|||+|.++..++..+...|+|+|+|+.|+.+++..-.......++.+..+++.+.+.       ..+||+|
T Consensus       120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-------~~~FD~V  192 (314)
T TIGR00452       120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-------LYAFDTV  192 (314)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-------CCCcCEE
Confidence            368899999999999888887777768999999999998754322111111246777777754332       3589999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      +|..+++|.    .+...++++++++|+|||.+++.+.
T Consensus       193 ~s~gvL~H~----~dp~~~L~el~r~LkpGG~Lvletl  226 (314)
T TIGR00452       193 FSMGVLYHR----KSPLEHLKQLKHQLVIKGELVLETL  226 (314)
T ss_pred             EEcchhhcc----CCHHHHHHHHHHhcCCCCEEEEEEE
Confidence            999988873    3467799999999999999998743

Known examples to date are restricted to the proteobacteria.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.69  E-value=9.7e-17  Score=115.22  Aligned_cols=96  Identities=27%  Similarity=0.472  Sum_probs=78.0

Q ss_pred             EEEEcCCCCccHhHHHHcC----CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           35 VCDLYCGAGVDVDKWETAL----IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        35 VLDlGcG~G~~~~~l~~~~----~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      |||+|||+|..+..+....    ..+++|+|+|++|++.++++....+.  +++++++|+.+.+.      ..++||+|+
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~------~~~~~D~v~   72 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPF------SDGKFDLVV   72 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHH------HSSSEEEEE
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcc------cCCCeeEEE
Confidence            7999999999999887652    25999999999999999998866432  58999999977543      467999999


Q ss_pred             eccc-hhhhcCCHHHHHHHHHHHhccccCCc
Q 025775          111 CFQH-LQMCFETEERARRLLQNVSSLLKPGG  140 (248)
Q Consensus       111 ~~~~-l~~~~~~~~~~~~~l~~~~~~LkpgG  140 (248)
                      |.+. ++|  .+.+....+++++.++|+|||
T Consensus        73 ~~~~~~~~--~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   73 CSGLSLHH--LSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             E-TTGGGG--SSHHHHHHHHHHHHHTEEEEE
T ss_pred             EcCCccCC--CCHHHHHHHHHHHHHHhCCCC
Confidence            9654 887  678899999999999999998

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.69  E-value=4.6e-16  Score=124.92  Aligned_cols=103  Identities=18%  Similarity=0.184  Sum_probs=84.0

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      ++.+|||+|||+|..+..++..+. +|+|+|+|+.|++.++++....+.  ++.+.++|+...++       +++||+|+
T Consensus        30 ~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~-------~~~fD~I~   99 (195)
T TIGR00477        30 APCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENL--PLRTDAYDINAAAL-------NEDYDFIF   99 (195)
T ss_pred             CCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCC--CceeEeccchhccc-------cCCCCEEE
Confidence            567999999999999999988765 899999999999999887765543  36677777654333       45799999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +..++|+  .+.+....+++++.++|+|||++++.
T Consensus       100 ~~~~~~~--~~~~~~~~~l~~~~~~LkpgG~lli~  132 (195)
T TIGR00477       100 STVVFMF--LQAGRVPEIIANMQAHTRPGGYNLIV  132 (195)
T ss_pred             Eeccccc--CCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            9998886  45677889999999999999996554

Part of a tellurite-reducing operon tehA and tehB

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.69  E-value=2.4e-16  Score=120.88  Aligned_cols=139  Identities=20%  Similarity=0.217  Sum_probs=100.6

Q ss_pred             hhhhhHhHHHHHHHHHhcCCCC-eEEEEcCCCCccHhHHHHcCCC-eEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcC
Q 025775           12 THHRLYEFAKTALIKIYSHPYV-TVCDLYCGAGVDVDKWETALIA-NYIGIDVATSGIGEARDTWENQRKNFIAEFFEAD   89 (248)
Q Consensus        12 ~~~~~~~~~~~~li~~~~~~~~-~VLDlGcG~G~~~~~l~~~~~~-~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d   89 (248)
                      ...++.+|.+......-+.+.+ +|||||||+|+.+..++..++. .++|+|.|+.+++.|+...+..+....+.|.+.|
T Consensus        47 ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~D  126 (227)
T KOG1271|consen   47 AEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLD  126 (227)
T ss_pred             HHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEee
Confidence            3446667766544311134444 9999999999999999988764 4999999999999999988877766669999999


Q ss_pred             CCCCchhhhhcccCCceeEEEecc-----chhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh--hHHHHHHH
Q 025775           90 PCAENFETQMQEKANQADLVCCFQ-----HLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS--STIWAKYQ  157 (248)
Q Consensus        90 ~~~~~~~~~~~~~~~~fD~V~~~~-----~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~--~~~~~~~~  157 (248)
                      +.+.++      ..++||+|.--.     +++- -.....+...+..+.+.|+|||+|+++..|.  +++...+.
T Consensus       127 I~~~~~------~~~qfdlvlDKGT~DAisLs~-d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~  194 (227)
T KOG1271|consen  127 ITDPDF------LSGQFDLVLDKGTLDAISLSP-DGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFE  194 (227)
T ss_pred             ccCCcc------cccceeEEeecCceeeeecCC-CCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHh
Confidence            998766      356676665432     2221 0122334667888999999999999997776  55555544

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.69  E-value=5.6e-16  Score=127.02  Aligned_cols=104  Identities=21%  Similarity=0.257  Sum_probs=85.9

Q ss_pred             CeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEe
Q 025775           33 VTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (248)
Q Consensus        33 ~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~  111 (248)
                      .+|||||||+|..+..++... ..+++|+|+|+.+++.|+++....+...++.++..|+...++       +++||+|++
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~-------~~~fD~I~~   73 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF-------PDTYDLVFG   73 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC-------CCCCCEeeh
Confidence            379999999999988887663 358999999999999999988776655568999999865433       458999999


Q ss_pred             ccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       112 ~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      ..++|+.    .+...+++++.++|+|||.+++..+
T Consensus        74 ~~~l~~~----~~~~~~l~~~~~~LkpgG~l~i~~~  105 (224)
T smart00828       74 FEVIHHI----KDKMDLFSNISRHLKDGGHLVLADF  105 (224)
T ss_pred             HHHHHhC----CCHHHHHHHHHHHcCCCCEEEEEEc
Confidence            9888873    3367899999999999999998744

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.68  E-value=4.7e-15  Score=121.22  Aligned_cols=102  Identities=20%  Similarity=0.151  Sum_probs=82.6

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      ++.+|||+|||+|..+..++..+. .++|+|+|++|++.|+++....+...++.+.++|+.+.         +++||+|+
T Consensus        55 ~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---------~~~fD~ii  124 (219)
T TIGR02021        55 KGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL---------CGEFDIVV  124 (219)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC---------CCCcCEEE
Confidence            678999999999999998877655 89999999999999999887654333588999997442         36899999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHhccccCCcEEEE
Q 025775          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLG  144 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~  144 (248)
                      +..++++  .+.+....++.++.+.+++++++.+
T Consensus       125 ~~~~l~~--~~~~~~~~~l~~i~~~~~~~~~i~~  156 (219)
T TIGR02021       125 CMDVLIH--YPASDMAKALGHLASLTKERVIFTF  156 (219)
T ss_pred             EhhHHHh--CCHHHHHHHHHHHHHHhCCCEEEEE
Confidence            9888876  3556788899999999887766554

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.67  E-value=1.6e-15  Score=118.76  Aligned_cols=165  Identities=19%  Similarity=0.224  Sum_probs=117.9

Q ss_pred             HHHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhccc
Q 025775           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (248)
Q Consensus        23 ~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  102 (248)
                      .+|..+++|+.+|||||||.|.++..+......+..|+|++++.+..+.++    +    +..+++|+.+. +.. .  +
T Consensus         5 ~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r----G----v~Viq~Dld~g-L~~-f--~   72 (193)
T PF07021_consen    5 QIIAEWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR----G----VSVIQGDLDEG-LAD-F--P   72 (193)
T ss_pred             HHHHHHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc----C----CCEEECCHHHh-Hhh-C--C
Confidence            457778899999999999999999888776555899999999998877654    2    66899998652 211 1  5


Q ss_pred             CCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHHHhHhhhhCCCCCCCCCCCCCcccCc
Q 025775          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSE  182 (248)
Q Consensus       103 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  182 (248)
                      +++||.|+++.++..    ....+.+++++   |+-|...++++||......++.=     ...|.-..           
T Consensus        73 d~sFD~VIlsqtLQ~----~~~P~~vL~Em---lRVgr~~IVsFPNFg~W~~R~~l-----~~~GrmPv-----------  129 (193)
T PF07021_consen   73 DQSFDYVILSQTLQA----VRRPDEVLEEM---LRVGRRAIVSFPNFGHWRNRLQL-----LLRGRMPV-----------  129 (193)
T ss_pred             CCCccEEehHhHHHh----HhHHHHHHHHH---HHhcCeEEEEecChHHHHHHHHH-----HhcCCCCC-----------
Confidence            889999999998876    34466677666   45588999999998766655541     11111000           


Q ss_pred             eeEEEecccCCCCCcceeeeEEEEccCccCCCcceechHHHHHHHHHcCcEEEEecCch
Q 025775          183 SYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLN  241 (248)
Q Consensus       183 ~~~~~~~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~G~~~v~~~~f~  241 (248)
                               .+..|     |.|+.     .+.-.+.+..+|.++|++.|+++++...+.
T Consensus       130 ---------t~~lP-----y~WYd-----TPNih~~Ti~DFe~lc~~~~i~I~~~~~~~  169 (193)
T PF07021_consen  130 ---------TKALP-----YEWYD-----TPNIHLCTIKDFEDLCRELGIRIEERVFLD  169 (193)
T ss_pred             ---------CCCCC-----CcccC-----CCCcccccHHHHHHHHHHCCCEEEEEEEEc
Confidence                     01112     55542     133468899999999999999999765543

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.67  E-value=2.4e-15  Score=119.49  Aligned_cols=130  Identities=17%  Similarity=0.078  Sum_probs=97.3

Q ss_pred             CCCCCcccchhhhhH-hHHHHHHHHHhcCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCC
Q 025775            3 VLPIPRSELTHHRLY-EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKN   80 (248)
Q Consensus         3 ~~~~~r~~~~~~~~~-~~~~~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~   80 (248)
                      ++..++.+....... .++.+..+..+++++.+|||+|||+|..+..++.. +..+|+|+|+|+.|++.|+++.+..+..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~d~l~l~~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~   95 (187)
T PRK00107         16 KYNLTAIRDPEELWERHILDSLAIAPYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK   95 (187)
T ss_pred             cccccccCCHHHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC
Confidence            344445555544333 34455666677778899999999999988877754 4469999999999999999988776643


Q ss_pred             ceEEEEEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775           81 FIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus        81 ~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                       ++.++++|+.+...       .++||+|+|...        .....+++.+.+.|+|||.+++....
T Consensus        96 -~i~~~~~d~~~~~~-------~~~fDlV~~~~~--------~~~~~~l~~~~~~LkpGG~lv~~~~~  147 (187)
T PRK00107         96 -NVTVVHGRAEEFGQ-------EEKFDVVTSRAV--------ASLSDLVELCLPLLKPGGRFLALKGR  147 (187)
T ss_pred             -CEEEEeccHhhCCC-------CCCccEEEEccc--------cCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence             38999999855321       468999998641        23577899999999999999988544

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.66  E-value=3.5e-15  Score=135.38  Aligned_cols=107  Identities=22%  Similarity=0.242  Sum_probs=87.5

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      ..++.+|||||||+|..+..++.....+++|+|+|+.|++.|+++.....  .++.|.++|+...++      ++++||+
T Consensus       264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~--~~v~~~~~d~~~~~~------~~~~fD~  335 (475)
T PLN02336        264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRK--CSVEFEVADCTKKTY------PDNSFDV  335 (475)
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCC--CceEEEEcCcccCCC------CCCCEEE
Confidence            34678999999999998888876544489999999999999987765332  358899999977665      4678999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      |+|..+++|.    .+...+++++.++|+|||.++++.+
T Consensus       336 I~s~~~l~h~----~d~~~~l~~~~r~LkpgG~l~i~~~  370 (475)
T PLN02336        336 IYSRDTILHI----QDKPALFRSFFKWLKPGGKVLISDY  370 (475)
T ss_pred             EEECCccccc----CCHHHHHHHHHHHcCCCeEEEEEEe
Confidence            9999888773    3467899999999999999998854

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.66  E-value=7.9e-16  Score=128.34  Aligned_cols=112  Identities=19%  Similarity=0.301  Sum_probs=88.4

Q ss_pred             HHHHHHhcC-CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhc
Q 025775           22 TALIKIYSH-PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ  100 (248)
Q Consensus        22 ~~li~~~~~-~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  100 (248)
                      ..+++.... ++.+|||+|||+|..+..+...+ .+++|+|+|+.|++.|+++...      ..++++|+...++     
T Consensus        32 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~~------~~~~~~d~~~~~~-----   99 (251)
T PRK10258         32 DALLAMLPQRKFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKDAA------DHYLAGDIESLPL-----   99 (251)
T ss_pred             HHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCCC------CCEEEcCcccCcC-----
Confidence            344444332 56789999999999888887655 4899999999999999877432      4578899877555     


Q ss_pred             ccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChh
Q 025775          101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (248)
Q Consensus       101 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~  150 (248)
                       .+++||+|++..++|+.    .+...++.++.++|+|||.++++++...
T Consensus       100 -~~~~fD~V~s~~~l~~~----~d~~~~l~~~~~~Lk~gG~l~~~~~~~~  144 (251)
T PRK10258        100 -ATATFDLAWSNLAVQWC----GNLSTALRELYRVVRPGGVVAFTTLVQG  144 (251)
T ss_pred             -CCCcEEEEEECchhhhc----CCHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence             46789999999988872    3467899999999999999999976653

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.66  E-value=5.9e-15  Score=129.80  Aligned_cols=155  Identities=19%  Similarity=0.198  Sum_probs=112.7

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      +.++.+|||||||+|..+..++.....+|+|+|+|+.+++.|+++....    .+.+...|...  +       +++||+
T Consensus       165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l----~v~~~~~D~~~--l-------~~~fD~  231 (383)
T PRK11705        165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL----PVEIRLQDYRD--L-------NGQFDR  231 (383)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccC----eEEEEECchhh--c-------CCCCCE
Confidence            4688999999999999988887653348999999999999999887532    37777777633  1       468999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHHHhHhhhhCCCCCCCCCCCCCcccCceeEEEe
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITF  188 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  188 (248)
                      |++..++++  .+......+++++.++|||||.+++.........                                   
T Consensus       232 Ivs~~~~eh--vg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~-----------------------------------  274 (383)
T PRK11705        232 IVSVGMFEH--VGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTD-----------------------------------  274 (383)
T ss_pred             EEEeCchhh--CChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCC-----------------------------------
Confidence            999888877  3456678899999999999999998754322100                                   


Q ss_pred             cccCCCCCcceeeeEEEEccCccCCCcceechHHHHHHHHHcCcEEEEecCchHHHhh
Q 025775          189 EVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDD  246 (248)
Q Consensus       189 ~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~G~~~v~~~~f~~~~~~  246 (248)
                          .....|-.+|.|.        ..++.+.+.+.+.++ .||++.+..+|...|..
T Consensus       275 ----~~~~~~i~~yifp--------~g~lps~~~i~~~~~-~~~~v~d~~~~~~hy~~  319 (383)
T PRK11705        275 ----TNVDPWINKYIFP--------NGCLPSVRQIAQASE-GLFVMEDWHNFGADYDR  319 (383)
T ss_pred             ----CCCCCCceeeecC--------CCcCCCHHHHHHHHH-CCcEEEEEecChhhHHH
Confidence                0001222334441        124667778777766 68999988888887753

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.66  E-value=1.2e-15  Score=120.70  Aligned_cols=103  Identities=18%  Similarity=0.249  Sum_probs=84.3

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      ++.++||||||.|+++..++..+. .|+++|+|+.+++.+.+..+..+  .++...+.|+.+..+       ++.||+|+
T Consensus        30 ~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~--l~i~~~~~Dl~~~~~-------~~~yD~I~   99 (192)
T PF03848_consen   30 KPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEG--LDIRTRVADLNDFDF-------PEEYDFIV   99 (192)
T ss_dssp             -SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT---TEEEEE-BGCCBS--------TTTEEEEE
T ss_pred             CCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcC--ceeEEEEecchhccc-------cCCcCEEE
Confidence            678999999999999999999999 89999999999999888766554  348889999877655       46899999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +..++++  ...+.+..+++++.+.++|||++++.
T Consensus       100 st~v~~f--L~~~~~~~i~~~m~~~~~pGG~~li~  132 (192)
T PF03848_consen  100 STVVFMF--LQRELRPQIIENMKAATKPGGYNLIV  132 (192)
T ss_dssp             EESSGGG--S-GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             EEEEecc--CCHHHHHHHHHHHHhhcCCcEEEEEE
Confidence            8888876  56778899999999999999998874

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.65  E-value=2.8e-15  Score=121.05  Aligned_cols=124  Identities=13%  Similarity=0.109  Sum_probs=91.6

Q ss_pred             CCCCCcccchhhhhHhHHHHHHHHHhcCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCc
Q 025775            3 VLPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNF   81 (248)
Q Consensus         3 ~~~~~r~~~~~~~~~~~~~~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~   81 (248)
                      +++|+|+.........++...+  ...+++.+|||+|||+|..+..+... +..+++|+|+|+.|++.|+++...     
T Consensus        17 ~~~rn~~~~~~~~~~~~~~~~l--~~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~-----   89 (204)
T TIGR03587        17 YIDRNSRQSLVAAKLAMFARAL--NRLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPN-----   89 (204)
T ss_pred             hhhccccHHHHHHHHHHHHHHH--HhcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCC-----
Confidence            4455555444333334443332  23456789999999999999888775 456999999999999999876432     


Q ss_pred             eEEEEEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775           82 IAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus        82 ~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                       +.+.++|+.+ ++      .+++||+|++..++++  .+.+.+..+++++.+++  ++++++.
T Consensus        90 -~~~~~~d~~~-~~------~~~sfD~V~~~~vL~h--l~p~~~~~~l~el~r~~--~~~v~i~  141 (204)
T TIGR03587        90 -INIIQGSLFD-PF------KDNFFDLVLTKGVLIH--INPDNLPTAYRELYRCS--NRYILIA  141 (204)
T ss_pred             -CcEEEeeccC-CC------CCCCEEEEEECChhhh--CCHHHHHHHHHHHHhhc--CcEEEEE
Confidence             5678888866 44      4679999999999987  35678899999999997  4566665

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.65  E-value=1.2e-15  Score=131.33  Aligned_cols=103  Identities=17%  Similarity=0.138  Sum_probs=83.3

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      .++.+|||||||+|..+..++.. +..+++++|+|+.|++.|+++....    ++.++++|+.+.++      .+++||+
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~----~i~~i~gD~e~lp~------~~~sFDv  181 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK----ECKIIEGDAEDLPF------PTDYADR  181 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc----CCeEEeccHHhCCC------CCCceeE
Confidence            46789999999999988777654 3458999999999999999876433    37789999876555      3678999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      |++..++|+. .   +...+++++.++|+|||.+++..
T Consensus       182 VIs~~~L~~~-~---d~~~~L~e~~rvLkPGG~LvIi~  215 (340)
T PLN02490        182 YVSAGSIEYW-P---DPQRGIKEAYRVLKIGGKACLIG  215 (340)
T ss_pred             EEEcChhhhC-C---CHHHHHHHHHHhcCCCcEEEEEE
Confidence            9999988872 2   34578999999999999998764

>TIGR03438 probable methyltransferase

Probab=99.64  E-value=3e-14  Score=121.80  Aligned_cols=113  Identities=19%  Similarity=0.151  Sum_probs=82.9

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcC--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCC-chhhhhcccCCc
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE-NFETQMQEKANQ  105 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~--~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~  105 (248)
                      ++++.+|||+|||+|..+..++...  ..+|+|+|+|++||+.|.++........++.++++|+.+. ++....  ....
T Consensus        61 ~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~--~~~~  138 (301)
T TIGR03438        61 TGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEP--AAGR  138 (301)
T ss_pred             hCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhccc--ccCC
Confidence            3567899999999999998887763  3589999999999999998876543334578899998652 221000  0112


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      ..++++...+++  .+.++...++++++++|+|||.|++.
T Consensus       139 ~~~~~~gs~~~~--~~~~e~~~~L~~i~~~L~pgG~~lig  176 (301)
T TIGR03438       139 RLGFFPGSTIGN--FTPEEAVAFLRRIRQLLGPGGGLLIG  176 (301)
T ss_pred             eEEEEecccccC--CCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence            334444455665  45778899999999999999999986

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.64  E-value=2.4e-15  Score=127.81  Aligned_cols=103  Identities=17%  Similarity=0.207  Sum_probs=86.5

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      ++.+|||+|||+|..+..++..+. +|+|+|+|+.|++.++++....+.  ++.+.+.|+....+       +++||+|+
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~-------~~~fD~I~  189 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASI-------QEEYDFIL  189 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccc-------cCCccEEE
Confidence            445999999999999999988765 999999999999999988766553  57788888755433       57899999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +..++|+  .+.+....+++++.++|+|||++++.
T Consensus       190 ~~~vl~~--l~~~~~~~~l~~~~~~LkpgG~~l~v  222 (287)
T PRK12335        190 STVVLMF--LNRERIPAIIKNMQEHTNPGGYNLIV  222 (287)
T ss_pred             Ecchhhh--CCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            9999987  45678889999999999999997765

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.63  E-value=1.5e-15  Score=127.01  Aligned_cols=106  Identities=21%  Similarity=0.174  Sum_probs=84.8

Q ss_pred             HHHHhc-CCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc
Q 025775           24 LIKIYS-HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE  101 (248)
Q Consensus        24 li~~~~-~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  101 (248)
                      ++..+. .++.+|||||||+|..+..++.. +..+++|+|+|+.|++.|+++    +    +.++++|+.+..       
T Consensus        21 ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~----~----~~~~~~d~~~~~-------   85 (255)
T PRK14103         21 LLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER----G----VDARTGDVRDWK-------   85 (255)
T ss_pred             HHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc----C----CcEEEcChhhCC-------
Confidence            344443 47889999999999998888776 235899999999999998753    2    678899985432       


Q ss_pred             cCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775          102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       102 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      ..++||+|+|..++|++-    +...+++++.++|||||.+++.+++
T Consensus        86 ~~~~fD~v~~~~~l~~~~----d~~~~l~~~~~~LkpgG~l~~~~~~  128 (255)
T PRK14103         86 PKPDTDVVVSNAALQWVP----EHADLLVRWVDELAPGSWIAVQVPG  128 (255)
T ss_pred             CCCCceEEEEehhhhhCC----CHHHHHHHHHHhCCCCcEEEEEcCC
Confidence            256899999999999832    3578999999999999999998664

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.63  E-value=1.3e-14  Score=117.68  Aligned_cols=108  Identities=19%  Similarity=0.135  Sum_probs=84.7

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhc-----------CCCceEEEEEcCCCCCchhhh
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ-----------RKNFIAEFFEADPCAENFETQ   98 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~-----------~~~~~~~~~~~d~~~~~~~~~   98 (248)
                      +++.+|||+|||.|.++..++..+. +|+|+|+|+.+++.+.+.....           ....++.++++|+.+.+..  
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~--  109 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA--  109 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc--
Confidence            5778999999999999999999888 8999999999999864422100           0123588999999775431  


Q ss_pred             hcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775           99 MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus        99 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                         ..++||.|+...++++  .+.+.....++.+.++|+|||.+++.
T Consensus       110 ---~~~~fD~i~D~~~~~~--l~~~~R~~~~~~l~~lLkpgG~~ll~  151 (213)
T TIGR03840       110 ---DLGPVDAVYDRAALIA--LPEEMRQRYAAHLLALLPPGARQLLI  151 (213)
T ss_pred             ---cCCCcCEEEechhhcc--CCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence               1357999988777775  46888899999999999999986654

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.63  E-value=1.5e-15  Score=127.15  Aligned_cols=104  Identities=29%  Similarity=0.336  Sum_probs=85.0

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      ..++.+|||||||+|..+..++.. +..+++|+|+|+.|++.|+++..      ++.++.+|+....       ...+||
T Consensus        29 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~------~~~~~~~d~~~~~-------~~~~fD   95 (258)
T PRK01683         29 LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP------DCQFVEADIASWQ-------PPQALD   95 (258)
T ss_pred             CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC------CCeEEECchhccC-------CCCCcc
Confidence            347889999999999999888765 34699999999999999987753      2778899985432       246899


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      +|++..++|++-    +...+++++.++|+|||.+++.+++.
T Consensus        96 ~v~~~~~l~~~~----d~~~~l~~~~~~LkpgG~~~~~~~~~  133 (258)
T PRK01683         96 LIFANASLQWLP----DHLELFPRLVSLLAPGGVLAVQMPDN  133 (258)
T ss_pred             EEEEccChhhCC----CHHHHHHHHHHhcCCCcEEEEECCCC
Confidence            999999999732    35689999999999999999987653

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.63  E-value=6.8e-17  Score=115.53  Aligned_cols=98  Identities=27%  Similarity=0.289  Sum_probs=62.0

Q ss_pred             EEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEeccc
Q 025775           36 CDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQH  114 (248)
Q Consensus        36 LDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~  114 (248)
                      ||+|||+|..+..+... +..+++|+|+|+.|++.|+++...... ........+..+...  ..  ..++||+|++..+
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~~--~~--~~~~fD~V~~~~v   75 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN-DNFERLRFDVLDLFD--YD--PPESFDLVVASNV   75 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS-----CC--C----SEEEEE-T
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-cceeEEEeecCChhh--cc--cccccceehhhhh
Confidence            79999999999998877 455999999999999988888766431 112233333222111  00  1359999999999


Q ss_pred             hhhhcCCHHHHHHHHHHHhccccCCcEE
Q 025775          115 LQMCFETEERARRLLQNVSSLLKPGGYF  142 (248)
Q Consensus       115 l~~~~~~~~~~~~~l~~~~~~LkpgG~~  142 (248)
                      +|++    +++..+++++.++|+|||.|
T Consensus        76 l~~l----~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   76 LHHL----EDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             TS------S-HHHHHHHHTTT-TSS-EE
T ss_pred             Hhhh----hhHHHHHHHHHHHcCCCCCC
Confidence            9984    66789999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.63  E-value=1.1e-14  Score=115.51  Aligned_cols=127  Identities=18%  Similarity=0.129  Sum_probs=90.1

Q ss_pred             CCCCcccchhhhhHhHHHHHH-HHHhcCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCc
Q 025775            4 LPIPRSELTHHRLYEFAKTAL-IKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNF   81 (248)
Q Consensus         4 ~~~~r~~~~~~~~~~~~~~~l-i~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~   81 (248)
                      +.-+|+.+|.....+.+...+ +...+ ++.+|||+|||+|..+..++.. +..+|+|+|+|+.|++.+++..+..+. .
T Consensus        15 ~~l~~~~~~~~~~~~~~~d~i~~~~~~-~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~-~   92 (181)
T TIGR00138        15 FNLTSLKTPEEIWERHILDSLKLLEYL-DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL-N   92 (181)
T ss_pred             ccccccCCHHHHHHHHHHHHHHHHHhc-CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC-C
Confidence            444666666544333222222 12223 4789999999999988887654 345899999999999999887766543 2


Q ss_pred             eEEEEEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775           82 IAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus        82 ~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      ++.++++|+.+..       ..++||+|+|.. +++       ...+++.+.++|+|||.+++...
T Consensus        93 ~i~~i~~d~~~~~-------~~~~fD~I~s~~-~~~-------~~~~~~~~~~~LkpgG~lvi~~~  143 (181)
T TIGR00138        93 NVEIVNGRAEDFQ-------HEEQFDVITSRA-LAS-------LNVLLELTLNLLKVGGYFLAYKG  143 (181)
T ss_pred             CeEEEecchhhcc-------ccCCccEEEehh-hhC-------HHHHHHHHHHhcCCCCEEEEEcC
Confidence            4899999986532       257899998865 333       45678888999999999998743

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.61  E-value=5.6e-15  Score=115.91  Aligned_cols=105  Identities=19%  Similarity=0.295  Sum_probs=83.7

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      .-.++||+|||.|.++..++... .+++++|+|+.+|+.|++|.....   ++.+.++|+.+..       ++++||+|+
T Consensus        43 ry~~alEvGCs~G~lT~~LA~rC-d~LlavDis~~Al~~Ar~Rl~~~~---~V~~~~~dvp~~~-------P~~~FDLIV  111 (201)
T PF05401_consen   43 RYRRALEVGCSIGVLTERLAPRC-DRLLAVDISPRALARARERLAGLP---HVEWIQADVPEFW-------PEGRFDLIV  111 (201)
T ss_dssp             SEEEEEEE--TTSHHHHHHGGGE-EEEEEEES-HHHHHHHHHHTTT-S---SEEEEES-TTT----------SS-EEEEE
T ss_pred             ccceeEecCCCccHHHHHHHHhh-CceEEEeCCHHHHHHHHHhcCCCC---CeEEEECcCCCCC-------CCCCeeEEE
Confidence            34689999999999999998775 489999999999999999987754   4999999996633       478999999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      +..+++| +.+.+++..++.++...|+|||.+++...
T Consensus       112 ~SEVlYY-L~~~~~L~~~l~~l~~~L~pgG~LV~g~~  147 (201)
T PF05401_consen  112 LSEVLYY-LDDAEDLRAALDRLVAALAPGGHLVFGHA  147 (201)
T ss_dssp             EES-GGG-SSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EehHhHc-CCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            9998887 45578899999999999999999998854

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.61  E-value=6.9e-15  Score=123.35  Aligned_cols=122  Identities=22%  Similarity=0.234  Sum_probs=87.6

Q ss_pred             hHhHHHHHHHHHh-cCCCCeEEEEcCCCCcc----HhHHHHc-C-----CCeEEEEeCChHHHHHHHHHHHh----cC--
Q 025775           16 LYEFAKTALIKIY-SHPYVTVCDLYCGAGVD----VDKWETA-L-----IANYIGIDVATSGIGEARDTWEN----QR--   78 (248)
Q Consensus        16 ~~~~~~~~li~~~-~~~~~~VLDlGcG~G~~----~~~l~~~-~-----~~~v~giDis~~~l~~a~~~~~~----~~--   78 (248)
                      +.+.+...++... ..++.+|||+|||||..    +..++.. +     ..+++|+|+|+.||+.|++..-.    .+  
T Consensus        83 l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~  162 (264)
T smart00138       83 LEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLP  162 (264)
T ss_pred             HHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCC
Confidence            4444444444332 22457999999999973    2333322 1     23899999999999999874210    00  


Q ss_pred             --------------------CCceEEEEEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccC
Q 025775           79 --------------------KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKP  138 (248)
Q Consensus        79 --------------------~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp  138 (248)
                                          ....+.|.++|+.+.++      +.++||+|+|..+++|  .+.+....+++++++.|+|
T Consensus       163 ~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~------~~~~fD~I~crnvl~y--f~~~~~~~~l~~l~~~L~p  234 (264)
T smart00138      163 KALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESP------PLGDFDLIFCRNVLIY--FDEPTQRKLLNRFAEALKP  234 (264)
T ss_pred             HHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCC------ccCCCCEEEechhHHh--CCHHHHHHHHHHHHHHhCC
Confidence                                01247899999977554      3678999999999998  4677788999999999999


Q ss_pred             CcEEEEE
Q 025775          139 GGYFLGI  145 (248)
Q Consensus       139 gG~~i~~  145 (248)
                      ||++++.
T Consensus       235 GG~L~lg  241 (264)
T smart00138      235 GGYLFLG  241 (264)
T ss_pred             CeEEEEE
Confidence            9999986

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK06202 hypothetical protein; Provisional

Probab=99.61  E-value=1.7e-14  Score=118.98  Aligned_cols=102  Identities=19%  Similarity=0.140  Sum_probs=75.9

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHc----C-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCC
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETA----L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN  104 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~----~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  104 (248)
                      .++.+|||+|||+|..+..++..    + ..+++|+|+|+.|++.|+++....+    +.+.+.+....+.      .++
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~~~l~~------~~~  128 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG----VTFRQAVSDELVA------EGE  128 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC----CeEEEEecccccc------cCC
Confidence            35679999999999987777542    2 2489999999999999988764333    4555555433332      357


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +||+|+|.+++|+  .+.+....+++++.++++ + .+++.
T Consensus       129 ~fD~V~~~~~lhh--~~d~~~~~~l~~~~r~~~-~-~~~i~  165 (232)
T PRK06202        129 RFDVVTSNHFLHH--LDDAEVVRLLADSAALAR-R-LVLHN  165 (232)
T ss_pred             CccEEEECCeeec--CChHHHHHHHHHHHHhcC-e-eEEEe
Confidence            8999999999998  345557889999999998 4 44444

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.60  E-value=2.8e-14  Score=117.62  Aligned_cols=108  Identities=21%  Similarity=0.258  Sum_probs=84.2

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      .++.+|||||||+|..+..+...+. +++++|+++.+++.|+++....+.  .+.+...|+.+...     ...++||+|
T Consensus        47 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~fD~I  118 (233)
T PRK05134         47 LFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAA-----EHPGQFDVV  118 (233)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhh-----hcCCCccEE
Confidence            3688999999999998888877654 899999999999999888765432  36677777643221     134789999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      ++...+++    ..+...+++++.+.|+|||.++++.++.
T Consensus       119 i~~~~l~~----~~~~~~~l~~~~~~L~~gG~l~v~~~~~  154 (233)
T PRK05134        119 TCMEMLEH----VPDPASFVRACAKLVKPGGLVFFSTLNR  154 (233)
T ss_pred             EEhhHhhc----cCCHHHHHHHHHHHcCCCcEEEEEecCC
Confidence            99887776    2346678999999999999999987764

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.60  E-value=1.5e-13  Score=117.56  Aligned_cols=105  Identities=20%  Similarity=0.299  Sum_probs=78.1

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcC----CCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR----KNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      ++.+|||+|||+|..+..++..+. +|+|+|+|+.|++.|+++.....    ....+.|.+.|+..  +       +++|
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~--l-------~~~f  213 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES--L-------SGKY  213 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh--c-------CCCc
Confidence            578999999999999988887764 89999999999999999876431    11246788888632  2       4789


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      |+|+|..+++|  ...+....+++.+.+ +.+||.++...|.
T Consensus       214 D~Vv~~~vL~H--~p~~~~~~ll~~l~~-l~~g~liIs~~p~  252 (315)
T PLN02585        214 DTVTCLDVLIH--YPQDKADGMIAHLAS-LAEKRLIISFAPK  252 (315)
T ss_pred             CEEEEcCEEEe--cCHHHHHHHHHHHHh-hcCCEEEEEeCCc
Confidence            99999988876  344556677777775 4566665544443

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.59  E-value=4.4e-14  Score=115.66  Aligned_cols=109  Identities=22%  Similarity=0.278  Sum_probs=85.0

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      ++.+|||+|||+|..+..++.... .++|+|+++.+++.++.+....+. .++.+.+.|+.+....     .+++||+|+
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~-----~~~~~D~i~  117 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPL-LKIEYRCTSVEDLAEK-----GAKSFDVVT  117 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeCCHHHhhcC-----CCCCccEEE
Confidence            478999999999998888876655 799999999999999988765432 1377788876443221     236899999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChh
Q 025775          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~  150 (248)
                      +...+++.    .+...+++++.+.|+|||.+++..++..
T Consensus       118 ~~~~l~~~----~~~~~~l~~~~~~L~~gG~l~i~~~~~~  153 (224)
T TIGR01983       118 CMEVLEHV----PDPQAFIRACAQLLKPGGILFFSTINRT  153 (224)
T ss_pred             ehhHHHhC----CCHHHHHHHHHHhcCCCcEEEEEecCCC
Confidence            99888863    3466899999999999999998876643

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.59  E-value=1.8e-13  Score=112.48  Aligned_cols=99  Identities=20%  Similarity=0.176  Sum_probs=78.6

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      .++.+|||+|||+|..+..++..+. .|+|+|+|+.|++.|+++....+...++.+.++|+..         ..++||+|
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---------~~~~fD~v  131 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---------LLGRFDTV  131 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---------ccCCcCEE
Confidence            4678999999999999988887765 7999999999999999987665433358888888421         25689999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCc
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGG  140 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG  140 (248)
                      ++..++|+  .+.+....+++++.+.+++++
T Consensus       132 ~~~~~l~~--~~~~~~~~~l~~l~~~~~~~~  160 (230)
T PRK07580        132 VCLDVLIH--YPQEDAARMLAHLASLTRGSL  160 (230)
T ss_pred             EEcchhhc--CCHHHHHHHHHHHHhhcCCeE
Confidence            99998866  356678889999988765444

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.58  E-value=1.7e-14  Score=113.04  Aligned_cols=115  Identities=22%  Similarity=0.286  Sum_probs=90.4

Q ss_pred             CeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEE-EEEcCCCCCc-hhhhhcccCCceeEEE
Q 025775           33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAE-FFEADPCAEN-FETQMQEKANQADLVC  110 (248)
Q Consensus        33 ~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~-~~~~d~~~~~-~~~~~~~~~~~fD~V~  110 (248)
                      ..|||+|||||.....+-..+..+|+++|+++.|-+.|.++...+. ..++. |++++..+.+ +      .++++|.|+
T Consensus        78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k-~~~~~~fvva~ge~l~~l------~d~s~DtVV  150 (252)
T KOG4300|consen   78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKK-PLQVERFVVADGENLPQL------ADGSYDTVV  150 (252)
T ss_pred             cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhcc-CcceEEEEeechhcCccc------ccCCeeeEE
Confidence            4589999999998877765566699999999999999998887653 34455 8899887755 3      588999999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh--hHHHHHHHH
Q 025775          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS--STIWAKYQK  158 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~--~~~~~~~~~  158 (248)
                      |.+++-    +.++..+.++++.++|+|||++++.-...  ...+.++.+
T Consensus       151 ~TlvLC----Sve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q  196 (252)
T KOG4300|consen  151 CTLVLC----SVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQ  196 (252)
T ss_pred             EEEEEe----ccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHH
Confidence            999654    57778999999999999999999984433  344444433

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.58  E-value=1.9e-14  Score=116.17  Aligned_cols=121  Identities=17%  Similarity=0.064  Sum_probs=88.9

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCC-CCCchhhhhcccCCce
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADP-CAENFETQMQEKANQA  106 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~~~~f  106 (248)
                      ..++.+|||+|||+|..+..++.. +..+++|+|+|+.|++.|+++....+. .++.++++|+ ...+  ...  .+++|
T Consensus        38 ~~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~--~~~--~~~~~  112 (202)
T PRK00121         38 GNDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLL--DMF--PDGSL  112 (202)
T ss_pred             CCCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHH--HHc--Ccccc
Confidence            346789999999999999888765 345899999999999999988765543 3588999997 3322  111  35789


Q ss_pred             eEEEeccchhhhcC----CHHHHHHHHHHHhccccCCcEEEEEecChhHHHH
Q 025775          107 DLVCCFQHLQMCFE----TEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA  154 (248)
Q Consensus       107 D~V~~~~~l~~~~~----~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~  154 (248)
                      |+|++.+...+...    .......+++++.++|+|||++++.+++......
T Consensus       113 D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~  164 (202)
T PRK00121        113 DRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEY  164 (202)
T ss_pred             ceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHH
Confidence            99998765432110    0112467899999999999999998877755443

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.57  E-value=6.5e-14  Score=110.03  Aligned_cols=111  Identities=18%  Similarity=0.198  Sum_probs=86.5

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCC-eEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIA-NYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~-~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      ++.+|||+|||+|..+..++..... +++++|+++.+++.+++....++... +.++..|+.+..       .+.+||+|
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~-------~~~~fD~I  102 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEAL-------PDGKFDLI  102 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTC-------CTTCEEEE
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-cccccccccccc-------cccceeEE
Confidence            6889999999999988888877553 79999999999999999888776433 889999985532       25799999


Q ss_pred             EeccchhhhcC-CHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          110 CCFQHLQMCFE-TEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       110 ~~~~~l~~~~~-~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      +|+--+|.... .......+++...+.|+|||.+++.....
T Consensus       103 v~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~  143 (170)
T PF05175_consen  103 VSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSH  143 (170)
T ss_dssp             EE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred             EEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecC
Confidence            99876654211 23467899999999999999998775544

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.57  E-value=1.2e-13  Score=112.81  Aligned_cols=103  Identities=24%  Similarity=0.296  Sum_probs=84.5

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCC--CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALI--ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~--~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      .++.+|||+|||+|..+..++....  .+++|+|+++.+++.++++...   ..++.+..+|+.+.++      ..++||
T Consensus        38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~---~~~i~~~~~d~~~~~~------~~~~~D  108 (223)
T TIGR01934        38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL---PLNIEFIQADAEALPF------EDNSFD  108 (223)
T ss_pred             CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc---CCCceEEecchhcCCC------CCCcEE
Confidence            3788999999999999988877644  4899999999999999887651   2247888999876554      356899


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +|++.+++|+    ..+...+++++.+.|+|||.+++.
T Consensus       109 ~i~~~~~~~~----~~~~~~~l~~~~~~L~~gG~l~~~  142 (223)
T TIGR01934       109 AVTIAFGLRN----VTDIQKALREMYRVLKPGGRLVIL  142 (223)
T ss_pred             EEEEeeeeCC----cccHHHHHHHHHHHcCCCcEEEEE
Confidence            9999888776    334778999999999999999876

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.57  E-value=1.2e-13  Score=102.31  Aligned_cols=111  Identities=13%  Similarity=0.014  Sum_probs=83.5

Q ss_pred             HHHHh-cCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc
Q 025775           24 LIKIY-SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE  101 (248)
Q Consensus        24 li~~~-~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  101 (248)
                      ++..+ ..++.+|||+|||+|..+..++.. +..+++|+|+|+.+++.+++.....+. .++.++..|+.....  .   
T Consensus        11 ~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~--~---   84 (124)
T TIGR02469        11 TLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV-SNIVIVEGDAPEALE--D---   84 (124)
T ss_pred             HHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC-CceEEEeccccccCh--h---
Confidence            44443 346789999999999999988876 346899999999999999987765432 247888888653111  0   


Q ss_pred             cCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775          102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       102 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      ...+||+|++....+       ...++++.+.+.|+|||.+++++.
T Consensus        85 ~~~~~D~v~~~~~~~-------~~~~~l~~~~~~Lk~gG~li~~~~  123 (124)
T TIGR02469        85 SLPEPDRVFIGGSGG-------LLQEILEAIWRRLRPGGRIVLNAI  123 (124)
T ss_pred             hcCCCCEEEECCcch-------hHHHHHHHHHHHcCCCCEEEEEec
Confidence            245899998866432       356899999999999999998753

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.56  E-value=3.6e-14  Score=119.73  Aligned_cols=101  Identities=20%  Similarity=0.351  Sum_probs=80.1

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcC----CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           31 PYVTVCDLYCGAGVDVDKWETAL----IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~----~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      +..+|||+|||+|..+..++...    ...++|+|+|+.|++.|+++..      ++.+.++|+.+.++      .+++|
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~------~~~~~~~d~~~lp~------~~~sf  152 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYP------QVTFCVASSHRLPF------ADQSL  152 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCC------CCeEEEeecccCCC------cCCce
Confidence            55789999999999888876541    2379999999999999987642      27789999877665      46799


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHH
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA  154 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~  154 (248)
                      |+|++.++.           ..++++.++|+|||++++..|+...+..
T Consensus       153 D~I~~~~~~-----------~~~~e~~rvLkpgG~li~~~p~~~~l~e  189 (272)
T PRK11088        153 DAIIRIYAP-----------CKAEELARVVKPGGIVITVTPGPRHLFE  189 (272)
T ss_pred             eEEEEecCC-----------CCHHHHHhhccCCCEEEEEeCCCcchHH
Confidence            999986632           2357889999999999999998866543

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.56  E-value=3.7e-14  Score=116.86  Aligned_cols=107  Identities=22%  Similarity=0.359  Sum_probs=87.4

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      ++.+|||+|||+|..+..++... ..+++|+|+++.+++.++.+...     ++.++++|+.+.++      .+++||+|
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~-----~~~~~~~d~~~~~~------~~~~fD~v  102 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSE-----NVQFICGDAEKLPL------EDSSFDLI  102 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCC-----CCeEEecchhhCCC------CCCceeEE
Confidence            45789999999999988887764 34789999999999999887642     37789999876554      46789999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHH
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~  152 (248)
                      ++..++|+.    .+...++.++.++|+|||.+++..+....+
T Consensus       103 i~~~~l~~~----~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~  141 (240)
T TIGR02072       103 VSNLALQWC----DDLSQALSELARVLKPGGLLAFSTFGPGTL  141 (240)
T ss_pred             EEhhhhhhc----cCHHHHHHHHHHHcCCCcEEEEEeCCccCH
Confidence            999999873    346789999999999999999997766443

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK06922 hypothetical protein; Provisional

Probab=99.56  E-value=3e-14  Score=130.08  Aligned_cols=108  Identities=23%  Similarity=0.277  Sum_probs=87.6

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCc--hhhhhcccCCcee
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN--FETQMQEKANQAD  107 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~fD  107 (248)
                      ++.+|||+|||+|..+..++.. +..+++|+|+|+.|++.|+++....+  .++.++++|+.+.+  +      .+++||
T Consensus       418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~f------edeSFD  489 (677)
T PRK06922        418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSF------EKESVD  489 (677)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCcccc------CCCCEE
Confidence            6789999999999988777664 44699999999999999998765433  24778889986543  2      467899


Q ss_pred             EEEeccchhhhcC---------CHHHHHHHHHHHhccccCCcEEEEEe
Q 025775          108 LVCCFQHLQMCFE---------TEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       108 ~V~~~~~l~~~~~---------~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      +|++...+|+.+.         +.+....+++++.++|||||.+++..
T Consensus       490 vVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D  537 (677)
T PRK06922        490 TIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD  537 (677)
T ss_pred             EEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            9999998986532         34678999999999999999999973

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.54  E-value=5.4e-14  Score=118.65  Aligned_cols=106  Identities=24%  Similarity=0.239  Sum_probs=84.1

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc-CC-CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA-LI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~-~~-~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      +.++.+|||+|||+|..+..++.. +. .+++|+|+++.|++.|+++....+. .++.+.++|+.+.++      .+++|
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-~~v~~~~~d~~~l~~------~~~~f  147 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-TNVEFRLGEIEALPV------ADNSV  147 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-CCEEEEEcchhhCCC------CCCce
Confidence            347899999999999877655543 32 4799999999999999987765442 257889999866554      35789


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      |+|++..++|+.    .+...+++++.++|||||.+++.
T Consensus       148 D~Vi~~~v~~~~----~d~~~~l~~~~r~LkpGG~l~i~  182 (272)
T PRK11873        148 DVIISNCVINLS----PDKERVFKEAFRVLKPGGRFAIS  182 (272)
T ss_pred             eEEEEcCcccCC----CCHHHHHHHHHHHcCCCcEEEEE
Confidence            999999888762    23567899999999999999987

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.53  E-value=2e-13  Score=111.19  Aligned_cols=108  Identities=17%  Similarity=0.066  Sum_probs=84.2

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhc-----------CCCceEEEEEcCCCCCchhh
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ-----------RKNFIAEFFEADPCAENFET   97 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~-----------~~~~~~~~~~~d~~~~~~~~   97 (248)
                      .+++.+|||+|||.|.++..++..+. +|+|+|+|+.+++.+.....-.           -...++.+.++|+.+.+.. 
T Consensus        35 ~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~-  112 (218)
T PRK13255         35 LPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA-  112 (218)
T ss_pred             CCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc-
Confidence            35678999999999999999998888 8999999999999864321100           0123588999999775421 


Q ss_pred             hhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEE
Q 025775           98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLG  144 (248)
Q Consensus        98 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~  144 (248)
                          ..+.||.|+...++++  .+.+.....++.+.++|+|||.+++
T Consensus       113 ----~~~~fd~v~D~~~~~~--l~~~~R~~~~~~l~~lL~pgG~~~l  153 (218)
T PRK13255        113 ----DLADVDAVYDRAALIA--LPEEMRERYVQQLAALLPAGCRGLL  153 (218)
T ss_pred             ----cCCCeeEEEehHhHhh--CCHHHHHHHHHHHHHHcCCCCeEEE
Confidence                1357999998887775  5788899999999999999996444

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.52  E-value=1.3e-13  Score=113.65  Aligned_cols=105  Identities=25%  Similarity=0.322  Sum_probs=85.6

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcC--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~--~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      ++.+|||+|||+|..+..++...  ..+++|+|+++.+++.++++....+...++.+..+|+.+..+      ..++||+
T Consensus        51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~------~~~~~D~  124 (239)
T PRK00216         51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF------PDNSFDA  124 (239)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC------CCCCccE
Confidence            67899999999999988887764  369999999999999999887653333358899999876543      3578999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      |++..++|+.    .+...+++++.+.|+|||.+++.
T Consensus       125 I~~~~~l~~~----~~~~~~l~~~~~~L~~gG~li~~  157 (239)
T PRK00216        125 VTIAFGLRNV----PDIDKALREMYRVLKPGGRLVIL  157 (239)
T ss_pred             EEEecccccC----CCHHHHHHHHHHhccCCcEEEEE
Confidence            9998888763    34678899999999999998876

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.52  E-value=2.2e-14  Score=113.14  Aligned_cols=102  Identities=28%  Similarity=0.312  Sum_probs=86.7

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      +..+|.|||||+|..+..++++ +.+.++|+|.|++||+.|+.+...      +.|.++|+.+-.       +....|++
T Consensus        30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~------~~f~~aDl~~w~-------p~~~~dll   96 (257)
T COG4106          30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPD------ATFEEADLRTWK-------PEQPTDLL   96 (257)
T ss_pred             ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCC------CceecccHhhcC-------CCCccchh
Confidence            6678999999999999888877 667999999999999999887654      779999986643       35789999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      +++.++|++-+    -..++..+...|.|||.+.+..|+.
T Consensus        97 faNAvlqWlpd----H~~ll~rL~~~L~Pgg~LAVQmPdN  132 (257)
T COG4106          97 FANAVLQWLPD----HPELLPRLVSQLAPGGVLAVQMPDN  132 (257)
T ss_pred             hhhhhhhhccc----cHHHHHHHHHhhCCCceEEEECCCc
Confidence            99999999544    4457777888999999999999987

>PRK08317 hypothetical protein; Provisional

Probab=99.52  E-value=2.1e-13  Score=112.32  Aligned_cols=108  Identities=25%  Similarity=0.329  Sum_probs=86.8

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      ..++.+|||+|||+|..+..++..  +..+++|+|+++.+++.++++....  ..++.+.++|+...++      .+++|
T Consensus        17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~------~~~~~   88 (241)
T PRK08317         17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL--GPNVEFVRGDADGLPF------PDGSF   88 (241)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC--CCceEEEecccccCCC------CCCCc
Confidence            457889999999999998888765  3458999999999999998873322  2348889999876554      35789


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      |+|++..++++.    .+...+++++.++|+|||.+++..++
T Consensus        89 D~v~~~~~~~~~----~~~~~~l~~~~~~L~~gG~l~~~~~~  126 (241)
T PRK08317         89 DAVRSDRVLQHL----EDPARALAEIARVLRPGGRVVVLDTD  126 (241)
T ss_pred             eEEEEechhhcc----CCHHHHHHHHHHHhcCCcEEEEEecC
Confidence            999999888763    34678899999999999999987654

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.52  E-value=2.9e-13  Score=115.05  Aligned_cols=110  Identities=20%  Similarity=0.160  Sum_probs=84.6

Q ss_pred             HHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCC
Q 025775           25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN  104 (248)
Q Consensus        25 i~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  104 (248)
                      +..+..++.+|||+|||+|..+..++..+..+++|+|+|+.+++.|++....++...++.+...+..  ..      ..+
T Consensus       153 l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~--~~------~~~  224 (288)
T TIGR00406       153 LEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLE--QP------IEG  224 (288)
T ss_pred             HHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccc--cc------cCC
Confidence            4455667899999999999988777776767999999999999999998876654444555655531  11      256


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      +||+|++....       +.+..++.++.++|+|||+++++....
T Consensus       225 ~fDlVvan~~~-------~~l~~ll~~~~~~LkpgG~li~sgi~~  262 (288)
T TIGR00406       225 KADVIVANILA-------EVIKELYPQFSRLVKPGGWLILSGILE  262 (288)
T ss_pred             CceEEEEecCH-------HHHHHHHHHHHHHcCCCcEEEEEeCcH
Confidence            89999987643       235678999999999999999985543

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.52  E-value=3.7e-13  Score=112.23  Aligned_cols=103  Identities=20%  Similarity=0.165  Sum_probs=77.2

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHH--HHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARD--TWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~--~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      .|.+|||||||+|.++..++..+++.|+|+|.++..+.+...  ++.+..    .......+.-+++    + ..+.||+
T Consensus       115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~----~~~~~lplgvE~L----p-~~~~FDt  185 (315)
T PF08003_consen  115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQD----PPVFELPLGVEDL----P-NLGAFDT  185 (315)
T ss_pred             CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCC----ccEEEcCcchhhc----c-ccCCcCE
Confidence            789999999999999999999999999999999998876443  333221    2222222222222    1 1578999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      |+|..++.|    ..+.-..+.+++..|+|||.+++.+
T Consensus       186 VF~MGVLYH----rr~Pl~~L~~Lk~~L~~gGeLvLET  219 (315)
T PF08003_consen  186 VFSMGVLYH----RRSPLDHLKQLKDSLRPGGELVLET  219 (315)
T ss_pred             EEEeeehhc----cCCHHHHHHHHHHhhCCCCEEEEEE
Confidence            999998876    4556778999999999999999873

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PLN03075 nicotianamine synthase; Provisional

Probab=99.52  E-value=2.8e-13  Score=113.90  Aligned_cols=108  Identities=14%  Similarity=0.062  Sum_probs=86.0

Q ss_pred             CCCeEEEEcCCCCccHhHHHH--c-CCCeEEEEeCChHHHHHHHHHHHh-cCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           31 PYVTVCDLYCGAGVDVDKWET--A-LIANYIGIDVATSGIGEARDTWEN-QRKNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~--~-~~~~v~giDis~~~l~~a~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      ++.+|+|||||.|..+..+..  . +.++++|+|+++++++.|++.+.. .+...++.|.++|+.+...      ..+.|
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~------~l~~F  196 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE------SLKEY  196 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc------ccCCc
Confidence            678999999998866554433  2 445899999999999999998854 4444569999999966321      23689


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      |+|+|. ++|+  ...++..++++++.+.|+|||++++...
T Consensus       197 DlVF~~-ALi~--~dk~~k~~vL~~l~~~LkPGG~Lvlr~~  234 (296)
T PLN03075        197 DVVFLA-ALVG--MDKEEKVKVIEHLGKHMAPGALLMLRSA  234 (296)
T ss_pred             CEEEEe-cccc--cccccHHHHHHHHHHhcCCCcEEEEecc
Confidence            999999 8887  3456788999999999999999999863

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=99.51  E-value=1.2e-13  Score=110.79  Aligned_cols=159  Identities=18%  Similarity=0.216  Sum_probs=112.0

Q ss_pred             eEEEEcCCCCccHhHHHHcCC---CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           34 TVCDLYCGAGVDVDKWETALI---ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        34 ~VLDlGcG~G~~~~~l~~~~~---~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      +|||+|||.|..+..+.+...   -.+.++|.||.+++..++......  .++.-.+.|++.+.+...+  ..+++|+|+
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~--~~~svD~it  149 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPP--EEGSVDIIT  149 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCC--CcCccceEE
Confidence            799999999999988887632   379999999999998887543322  2366677888776643222  468999999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHHHhHhhhhCCCCCCCCCCCCCcccCceeEEEecc
Q 025775          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEV  190 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  190 (248)
                      +.+++--  .+.+....+++++.++|||||.+++---....+. +                              ++|..
T Consensus       150 ~IFvLSA--i~pek~~~a~~nl~~llKPGG~llfrDYg~~Dla-q------------------------------lRF~~  196 (264)
T KOG2361|consen  150 LIFVLSA--IHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLA-Q------------------------------LRFKK  196 (264)
T ss_pred             EEEEEec--cChHHHHHHHHHHHHHhCCCcEEEEeecccchHH-H------------------------------HhccC
Confidence            9998865  6788899999999999999999998744332221 1                              11210


Q ss_pred             cCCCCCcceeeeEEEEccCccCCCcceechHHHHHHHHHcCcEEEEe
Q 025775          191 EEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEI  237 (248)
Q Consensus       191 ~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~G~~~v~~  237 (248)
                      .    ..++  ..|+..++.+  .-|+.+.+.|.+++.++||..++.
T Consensus       197 ~----~~i~--~nfYVRgDGT--~~YfF~~eeL~~~f~~agf~~~~~  235 (264)
T KOG2361|consen  197 G----QCIS--ENFYVRGDGT--RAYFFTEEELDELFTKAGFEEVQL  235 (264)
T ss_pred             C----ceee--cceEEccCCc--eeeeccHHHHHHHHHhcccchhcc
Confidence            0    0000  1122333332  347889999999999999998754

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.50  E-value=4.9e-13  Score=107.26  Aligned_cols=160  Identities=16%  Similarity=0.199  Sum_probs=103.1

Q ss_pred             HHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCC--chhhhhcccC
Q 025775           26 KIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE--NFETQMQEKA  103 (248)
Q Consensus        26 ~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  103 (248)
                      ...++++.+|||+|||+|..+..++......++|+|+|+.+++.++.+    +    +.++++|+.+.  ++      .+
T Consensus         8 ~~~i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~----~----~~~~~~d~~~~l~~~------~~   73 (194)
T TIGR02081         8 LNLIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR----G----VNVIQGDLDEGLEAF------PD   73 (194)
T ss_pred             HHhcCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc----C----CeEEEEEhhhccccc------CC
Confidence            344567889999999999998888665444789999999999988642    2    56788887541  12      35


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHHHhHhhhhCCCCCCCCCCCCCcccCce
Q 025775          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSES  183 (248)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  183 (248)
                      ++||+|+|..++|++    .+...+++++.+.   +|..++++|+.........     +...+.      ..       
T Consensus        74 ~sfD~Vi~~~~l~~~----~d~~~~l~e~~r~---~~~~ii~~p~~~~~~~~~~-----~~~~~~------~~-------  128 (194)
T TIGR02081        74 KSFDYVILSQTLQAT----RNPEEILDEMLRV---GRHAIVSFPNFGYWRVRWS-----ILTKGR------MP-------  128 (194)
T ss_pred             CCcCEEEEhhHhHcC----cCHHHHHHHHHHh---CCeEEEEcCChhHHHHHHH-----HHhCCc------cc-------
Confidence            789999999999873    2356677777665   4556777777543322211     000000      00       


Q ss_pred             eEEEecccCCCCCcceeeeEEEEccCccCCCcceechHHHHHHHHHcCcEEEEecCch
Q 025775          184 YVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLN  241 (248)
Q Consensus       184 ~~~~~~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~G~~~v~~~~f~  241 (248)
                          ..   ...     .|.+.. .    ....+.+.+.+.++++++||+++....+.
T Consensus       129 ----~~---~~~-----~~~~~~-~----~~~~~~s~~~~~~ll~~~Gf~v~~~~~~~  169 (194)
T TIGR02081       129 ----VT---GEL-----PYDWYN-T----PNIHFCTIADFEDLCGELNLRILDRAAFD  169 (194)
T ss_pred             ----cC---CCC-----CccccC-C----CCcccCcHHHHHHHHHHCCCEEEEEEEec
Confidence                00   000     011110 0    12346789999999999999999877664

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.50  E-value=6.6e-13  Score=115.94  Aligned_cols=109  Identities=17%  Similarity=0.159  Sum_probs=84.4

Q ss_pred             CCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCC--ceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           32 YVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKN--FIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        32 ~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      +.+|||+|||+|..+..++... ..+++++|+|+.|++.|++....++..  .++.++..|+.+. +      .+.+||+
T Consensus       229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~------~~~~fDl  301 (378)
T PRK15001        229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-V------EPFRFNA  301 (378)
T ss_pred             CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-C------CCCCEEE
Confidence            4689999999999988887763 459999999999999999887654321  2578888887442 1      2458999


Q ss_pred             EEeccchhhhc-CCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775          109 VCCFQHLQMCF-ETEERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       109 V~~~~~l~~~~-~~~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      |+|+-.+|... .+.....+++..+.++|+|||.+++...
T Consensus       302 IlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n  341 (378)
T PRK15001        302 VLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN  341 (378)
T ss_pred             EEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence            99987666432 2344567899999999999999998853

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.50  E-value=6.5e-14  Score=102.93  Aligned_cols=113  Identities=22%  Similarity=0.211  Sum_probs=85.5

Q ss_pred             CCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEe
Q 025775           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (248)
Q Consensus        32 ~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~  111 (248)
                      |.+|||+|||+|..+..++.....+++|+|+++.+++.|+......+...++.++++|.....  ...  ..++||+|++
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--~~~--~~~~~D~Iv~   76 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLP--EPL--PDGKFDLIVT   76 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHH--HTC--TTT-EEEEEE
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhch--hhc--cCceeEEEEE
Confidence            568999999999999888877756999999999999999998887665556899999984432  111  4689999999


Q ss_pred             ccchhhhcCC----HHHHHHHHHHHhccccCCcEEEEEecC
Q 025775          112 FQHLQMCFET----EERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       112 ~~~l~~~~~~----~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      .--.......    .+....+++.+.++|+|||.+++.+|+
T Consensus        77 npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~  117 (117)
T PF13659_consen   77 NPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITPA  117 (117)
T ss_dssp             --STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             CCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            6544321111    124578999999999999999998764

...

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=99.49  E-value=1.1e-13  Score=111.04  Aligned_cols=125  Identities=13%  Similarity=0.111  Sum_probs=85.2

Q ss_pred             CCCCcccchhhhhHhHHHHHHHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceE
Q 025775            4 LPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIA   83 (248)
Q Consensus         4 ~~~~r~~~~~~~~~~~~~~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~   83 (248)
                      |..+|+.+|    .+|++..  ..+......++|+|||+|..+.-++. .+.+|+|+|+|+.||+.|++..+........
T Consensus        12 Y~~ARP~YP----tdw~~~i--a~~~~~h~~a~DvG~G~Gqa~~~iae-~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~   84 (261)
T KOG3010|consen   12 YLNARPSYP----TDWFKKI--ASRTEGHRLAWDVGTGNGQAARGIAE-HYKEVIATDVSEAMLKVAKKHPPVTYCHTPS   84 (261)
T ss_pred             HhhcCCCCc----HHHHHHH--HhhCCCcceEEEeccCCCcchHHHHH-hhhhheeecCCHHHHHHhhcCCCcccccCCc
Confidence            457899999    3565533  23333333899999999976666654 4679999999999999988765432211112


Q ss_pred             EEEEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCc-EEEEEe
Q 025775           84 EFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGG-YFLGIT  146 (248)
Q Consensus        84 ~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG-~~i~~~  146 (248)
                      .....+.  .++    ...+++.|+|+|..++|+ |.    ++++.+++.++||++| .+.+..
T Consensus        85 ~ms~~~~--v~L----~g~e~SVDlI~~Aqa~HW-Fd----le~fy~~~~rvLRk~Gg~iavW~  137 (261)
T KOG3010|consen   85 TMSSDEM--VDL----LGGEESVDLITAAQAVHW-FD----LERFYKEAYRVLRKDGGLIAVWN  137 (261)
T ss_pred             ccccccc--ccc----cCCCcceeeehhhhhHHh-hc----hHHHHHHHHHHcCCCCCEEEEEE
Confidence            2222222  122    113789999999999998 44    7889999999998766 666653

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.48  E-value=8.8e-13  Score=106.70  Aligned_cols=102  Identities=14%  Similarity=0.080  Sum_probs=78.9

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      ..++.+|||+|||+|..+..++..  ..++|+++|+++.+++.|+++....+...++.++++|..+...      ...+|
T Consensus        70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~------~~~~f  143 (205)
T PRK13944         70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE------KHAPF  143 (205)
T ss_pred             CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc------cCCCc
Confidence            357889999999999988777654  2358999999999999999888765543358899999865322      24689


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      |+|++..+.++          +.+++.+.|+|||.+++..
T Consensus       144 D~Ii~~~~~~~----------~~~~l~~~L~~gG~lvi~~  173 (205)
T PRK13944        144 DAIIVTAAAST----------IPSALVRQLKDGGVLVIPV  173 (205)
T ss_pred             cEEEEccCcch----------hhHHHHHhcCcCcEEEEEE
Confidence            99999876554          2246778999999998864

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.48  E-value=1.6e-12  Score=103.66  Aligned_cols=103  Identities=11%  Similarity=0.046  Sum_probs=79.8

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      ..++.+|||+|||+|..+..++... ..+++++|+|+.+++.|++.....+. .++.++++|+.. .+       .++||
T Consensus        29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~-~~i~~~~~d~~~-~~-------~~~~D   99 (187)
T PRK08287         29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC-GNIDIIPGEAPI-EL-------PGKAD   99 (187)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-CCeEEEecCchh-hc-------CcCCC
Confidence            3478899999999999888887653 35899999999999999887765432 247888888631 11       45799


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      +|++....++       ...++..+.+.|+|||.+++...
T Consensus       100 ~v~~~~~~~~-------~~~~l~~~~~~Lk~gG~lv~~~~  132 (187)
T PRK08287        100 AIFIGGSGGN-------LTAIIDWSLAHLHPGGRLVLTFI  132 (187)
T ss_pred             EEEECCCccC-------HHHHHHHHHHhcCCCeEEEEEEe
Confidence            9998764432       45688899999999999988754

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.47  E-value=1.8e-12  Score=104.27  Aligned_cols=121  Identities=12%  Similarity=0.062  Sum_probs=88.1

Q ss_pred             HHHHHHHHh-cCCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh
Q 025775           20 AKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE   96 (248)
Q Consensus        20 ~~~~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   96 (248)
                      ++...+... ..++.+|||+|||+|.++..++..  +..+++++|+++.+++.|+++....+...++.++.+|+.+.   
T Consensus        28 ~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~---  104 (198)
T PRK00377         28 IRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEI---  104 (198)
T ss_pred             HHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhh---
Confidence            343444443 458899999999999988877654  33589999999999999998876655334578888887442   


Q ss_pred             hhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHH
Q 025775           97 TQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (248)
Q Consensus        97 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~  152 (248)
                        ++...++||+|++...       ......+++.+.++|+|||.+++..+..+.+
T Consensus       105 --l~~~~~~~D~V~~~~~-------~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~  151 (198)
T PRK00377        105 --LFTINEKFDRIFIGGG-------SEKLKEIISASWEIIKKGGRIVIDAILLETV  151 (198)
T ss_pred             --HhhcCCCCCEEEECCC-------cccHHHHHHHHHHHcCCCcEEEEEeecHHHH
Confidence              1112468999987542       2236778999999999999999876665443

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.47  E-value=7.6e-13  Score=104.80  Aligned_cols=107  Identities=14%  Similarity=0.111  Sum_probs=82.6

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      ++.+|||+|||+|..+..++.... +++|+|+|+.|++.++++....+  ..+.+.++|+.+..        .++||+|+
T Consensus        19 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~--------~~~fD~Vi   87 (179)
T TIGR00537        19 KPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNN--VGLDVVMTDLFKGV--------RGKFDVIL   87 (179)
T ss_pred             CCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcC--CceEEEEccccccc--------CCcccEEE
Confidence            567899999999999988887766 89999999999999998876554  24788888875421        35899999


Q ss_pred             eccchhhhcC-----------------CHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775          111 CFQHLQMCFE-----------------TEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       111 ~~~~l~~~~~-----------------~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      +....+..-.                 .......+++++.++|+|||.+++..+.
T Consensus        88 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~  142 (179)
T TIGR00537        88 FNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSS  142 (179)
T ss_pred             ECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEec
Confidence            9865543211                 1122578899999999999999887543

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.47  E-value=6.4e-13  Score=120.65  Aligned_cols=105  Identities=19%  Similarity=0.195  Sum_probs=84.3

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      ++.+|||||||+|..+..++... .+++|+|+++.|++.++.....   ..++.++++|+....+.    .++++||+|+
T Consensus        37 ~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~~~---~~~i~~~~~d~~~~~~~----~~~~~fD~I~  108 (475)
T PLN02336         37 EGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESINGH---YKNVKFMCADVTSPDLN----ISDGSVDLIF  108 (475)
T ss_pred             CCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHhcc---CCceEEEEecccccccC----CCCCCEEEEe
Confidence            56799999999999999987764 4899999999999987654321   12488999998643221    1457899999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      |..++|+  .+.+....+++++.++|+|||++++.
T Consensus       109 ~~~~l~~--l~~~~~~~~l~~~~r~Lk~gG~l~~~  141 (475)
T PLN02336        109 SNWLLMY--LSDKEVENLAERMVKWLKVGGYIFFR  141 (475)
T ss_pred             hhhhHHh--CCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            9999998  45666889999999999999999886

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.46  E-value=1.3e-12  Score=112.03  Aligned_cols=105  Identities=13%  Similarity=0.081  Sum_probs=87.2

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      .++.+|||||||+|..+..+++. +..+++++|+ +.+++.++++....+...+++++.+|+.+.++        ..+|+
T Consensus       148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~--------~~~D~  218 (306)
T TIGR02716       148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY--------PEADA  218 (306)
T ss_pred             CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC--------CCCCE
Confidence            46789999999999999888876 3358999997 78999999888776655678999999876443        23699


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      |++...+|.  .+.+....+++++.+.|+|||.+++.
T Consensus       219 v~~~~~lh~--~~~~~~~~il~~~~~~L~pgG~l~i~  253 (306)
T TIGR02716       219 VLFCRILYS--ANEQLSTIMCKKAFDAMRSGGRLLIL  253 (306)
T ss_pred             EEeEhhhhc--CChHHHHHHHHHHHHhcCCCCEEEEE
Confidence            998888886  45667789999999999999999887

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.45  E-value=6e-13  Score=106.75  Aligned_cols=117  Identities=14%  Similarity=0.075  Sum_probs=86.1

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      .+..+|||||||+|..+..++.. +..+++|+|+++.+++.|+++....+.. ++.++++|+....  .... .++++|.
T Consensus        15 ~~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~--~~~~-~~~~~d~   90 (194)
T TIGR00091        15 NKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELL--DKFF-PDGSLSK   90 (194)
T ss_pred             CCCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHH--HhhC-CCCceeE
Confidence            45678999999999999888876 3458999999999999998887665432 5899999985421  1110 2458999


Q ss_pred             EEeccchhhhcCCH-----HHHHHHHHHHhccccCCcEEEEEecChhH
Q 025775          109 VCCFQHLQMCFETE-----ERARRLLQNVSSLLKPGGYFLGITPDSST  151 (248)
Q Consensus       109 V~~~~~l~~~~~~~-----~~~~~~l~~~~~~LkpgG~~i~~~~~~~~  151 (248)
                      |++.+.-++. ...     -....+++++.++|||||.+++.+.+...
T Consensus        91 v~~~~pdpw~-k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~  137 (194)
T TIGR00091        91 VFLNFPDPWP-KKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPL  137 (194)
T ss_pred             EEEECCCcCC-CCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHH
Confidence            9887654431 100     01257899999999999999998776653

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.45  E-value=1.4e-12  Score=105.75  Aligned_cols=116  Identities=17%  Similarity=0.099  Sum_probs=81.1

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcC--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhh--cccCC
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM--QEKAN  104 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~--~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~  104 (248)
                      +.++.+|||||||+|.++..++...  ...|+|+|+++ |.     ..      ..+.++++|+.+....+.+  ....+
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-----~~------~~v~~i~~D~~~~~~~~~i~~~~~~~  116 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-----PI------VGVDFLQGDFRDELVLKALLERVGDS  116 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-----CC------CCcEEEecCCCChHHHHHHHHHhCCC
Confidence            5688899999999999998887752  35899999998 21     11      1388999999875421111  01357


Q ss_pred             ceeEEEeccchhhhcCCH-H------HHHHHHHHHhccccCCcEEEEEecChhHHHHHH
Q 025775          105 QADLVCCFQHLQMCFETE-E------RARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~-~------~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~  156 (248)
                      +||+|+|..+.++.-.+. +      ....+++++.++|+|||.|++.+..++.+.+.+
T Consensus       117 ~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l  175 (209)
T PRK11188        117 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYL  175 (209)
T ss_pred             CCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHH
Confidence            899999987666421111 1      125789999999999999999877665444433

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.45  E-value=2.1e-12  Score=111.95  Aligned_cols=108  Identities=19%  Similarity=0.214  Sum_probs=85.8

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      ...+|||+|||+|..+..++... ..+++++|+|+.|++.|++....++.  ...++..|+...        ..++||+|
T Consensus       196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l--~~~~~~~D~~~~--------~~~~fDlI  265 (342)
T PRK09489        196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL--EGEVFASNVFSD--------IKGRFDMI  265 (342)
T ss_pred             CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCEEEEcccccc--------cCCCccEE
Confidence            35689999999999888887763 35899999999999999998876653  356677776431        25689999


Q ss_pred             EeccchhhhcCC-HHHHHHHHHHHhccccCCcEEEEEecC
Q 025775          110 CCFQHLQMCFET-EERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       110 ~~~~~l~~~~~~-~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      +|+..+|+.... ......++.++.+.|+|||.+++....
T Consensus       266 vsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~  305 (342)
T PRK09489        266 ISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA  305 (342)
T ss_pred             EECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence            999888864332 456789999999999999999987544

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.44  E-value=2.1e-12  Score=107.64  Aligned_cols=102  Identities=20%  Similarity=0.206  Sum_probs=75.9

Q ss_pred             HhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           27 IYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        27 ~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      ....++.+|||+|||+|..+..++..+..+++|+|+|+.+++.|++....++....+.+..+              +.+|
T Consensus       115 ~~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~--------------~~~f  180 (250)
T PRK00517        115 KLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQG--------------DLKA  180 (250)
T ss_pred             hhcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC--------------CCCc
Confidence            34567899999999999888777666666799999999999999988776542111221111              2279


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      |+|++....       +....++.++.++|+|||.++++....
T Consensus       181 D~Vvani~~-------~~~~~l~~~~~~~LkpgG~lilsgi~~  216 (250)
T PRK00517        181 DVIVANILA-------NPLLELAPDLARLLKPGGRLILSGILE  216 (250)
T ss_pred             CEEEEcCcH-------HHHHHHHHHHHHhcCCCcEEEEEECcH
Confidence            999886532       336678999999999999999985443

>PRK04266 fibrillarin; Provisional

Probab=99.44  E-value=2e-12  Score=105.83  Aligned_cols=108  Identities=17%  Similarity=0.091  Sum_probs=78.9

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      +.++.+|||+|||+|..+..++.. +.+.|+|+|+++.|++.+.++....   .++.++.+|+........   ...+||
T Consensus        70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~---l~~~~D  143 (226)
T PRK04266         70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAH---VVEKVD  143 (226)
T ss_pred             CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhh---ccccCC
Confidence            448899999999999999888765 3358999999999999776665432   237888999865311111   135699


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      +|++...      .......+++++.++|||||.++++++.
T Consensus       144 ~i~~d~~------~p~~~~~~L~~~~r~LKpGG~lvI~v~~  178 (226)
T PRK04266        144 VIYQDVA------QPNQAEIAIDNAEFFLKDGGYLLLAIKA  178 (226)
T ss_pred             EEEECCC------ChhHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            9975432      2333456789999999999999997553

>PRK14967 putative methyltransferase; Provisional

Probab=99.43  E-value=3.2e-12  Score=104.75  Aligned_cols=111  Identities=19%  Similarity=0.148  Sum_probs=82.9

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      ..++.+|||+|||+|..+..++..+..+++|+|+|+.+++.+++.....+.  ++.++++|+... +      .+++||+
T Consensus        34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~-~------~~~~fD~  104 (223)
T PRK14967         34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARA-V------EFRPFDV  104 (223)
T ss_pred             cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhh-c------cCCCeeE
Confidence            457889999999999988888776656999999999999999887765442  477888887542 2      3568999


Q ss_pred             EEeccchhhhc-----------------CCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775          109 VCCFQHLQMCF-----------------ETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       109 V~~~~~l~~~~-----------------~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      |++....+...                 ......+.+++++.++|+|||.+++....
T Consensus       105 Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~  161 (223)
T PRK14967        105 VVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE  161 (223)
T ss_pred             EEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            99864222110                 11223677899999999999999986444

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.43  E-value=1.7e-12  Score=112.41  Aligned_cols=121  Identities=17%  Similarity=0.111  Sum_probs=90.3

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      .+++.+|||+|||+|..+...+..+ ..++|+|+++.|++.|+......+... +.+.++|+.+.++      .+++||+
T Consensus       180 ~~~g~~vLDp~cGtG~~lieaa~~~-~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~------~~~~~D~  251 (329)
T TIGR01177       180 VTEGDRVLDPFCGTGGFLIEAGLMG-AKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPL------SSESVDA  251 (329)
T ss_pred             CCCcCEEEECCCCCCHHHHHHHHhC-CeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCc------ccCCCCE
Confidence            4578899999999999887765544 489999999999999988876654322 6788999877654      3578999


Q ss_pred             EEeccchhh--hc---CCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHH
Q 025775          109 VCCFQHLQM--CF---ETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ  157 (248)
Q Consensus       109 V~~~~~l~~--~~---~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~  157 (248)
                      |++..-...  ..   ...+....+++++.++|+|||.+++.+|+...+...+.
T Consensus       252 Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~~~~~~~  305 (329)
T TIGR01177       252 IATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRIDLESLAE  305 (329)
T ss_pred             EEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCCHHHHHh
Confidence            998632110  00   11234688999999999999999999888755554443

This family is found exclusively in the Archaea.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.42  E-value=3.2e-12  Score=103.97  Aligned_cols=101  Identities=13%  Similarity=0.022  Sum_probs=78.3

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc-C-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~-~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      ..++.+|||||||+|..+..++.. + .++|+++|+++++++.|+++....+. .++.++++|......      ..++|
T Consensus        74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~~~~~~------~~~~f  146 (212)
T PRK13942         74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDGTLGYE------ENAPY  146 (212)
T ss_pred             CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccCCC------cCCCc
Confidence            458899999999999988777665 2 35999999999999999998876542 358999999865432      35789


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      |+|++..+.+.          +...+.+.|+|||.+++..
T Consensus       147 D~I~~~~~~~~----------~~~~l~~~LkpgG~lvi~~  176 (212)
T PRK13942        147 DRIYVTAAGPD----------IPKPLIEQLKDGGIMVIPV  176 (212)
T ss_pred             CEEEECCCccc----------chHHHHHhhCCCcEEEEEE
Confidence            99998775443          2235667899999998864

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=99.41  E-value=2.5e-13  Score=105.67  Aligned_cols=80  Identities=19%  Similarity=0.179  Sum_probs=64.6

Q ss_pred             EEEeCChHHHHHHHHHHHhcC--CCceEEEEEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhcc
Q 025775           58 IGIDVATSGIGEARDTWENQR--KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSL  135 (248)
Q Consensus        58 ~giDis~~~l~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~  135 (248)
                      +|+|+|++||+.|+++.....  ...+++++++|+.+.++      .+++||+|++.+++|+.    ++..+++++++++
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~------~~~~fD~v~~~~~l~~~----~d~~~~l~ei~rv   70 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPF------DDCEFDAVTMGYGLRNV----VDRLRAMKEMYRV   70 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCC------CCCCeeEEEecchhhcC----CCHHHHHHHHHHH
Confidence            489999999999987764321  12358999999987665      47799999999999873    3578999999999


Q ss_pred             ccCCcEEEEEec
Q 025775          136 LKPGGYFLGITP  147 (248)
Q Consensus       136 LkpgG~~i~~~~  147 (248)
                      |||||.+++...
T Consensus        71 LkpGG~l~i~d~   82 (160)
T PLN02232         71 LKPGSRVSILDF   82 (160)
T ss_pred             cCcCeEEEEEEC
Confidence            999999987733

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.41  E-value=1.6e-12  Score=109.88  Aligned_cols=106  Identities=25%  Similarity=0.314  Sum_probs=81.2

Q ss_pred             HHHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhccc
Q 025775           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (248)
Q Consensus        23 ~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  102 (248)
                      .++..+..++.+|||+|||+|-++...+..+.++|+|+|+++.+++.|++....++...++...  .  ..+.      .
T Consensus       153 ~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~--~~~~------~  222 (295)
T PF06325_consen  153 ELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--L--SEDL------V  222 (295)
T ss_dssp             HHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--C--TSCT------C
T ss_pred             HHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--E--eccc------c
Confidence            3456677889999999999998888887888889999999999999999988777654444332  1  1112      2


Q ss_pred             CCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       103 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      ..+||+|+++-..       +.+..++..+.++|+|||+++++
T Consensus       223 ~~~~dlvvANI~~-------~vL~~l~~~~~~~l~~~G~lIlS  258 (295)
T PF06325_consen  223 EGKFDLVVANILA-------DVLLELAPDIASLLKPGGYLILS  258 (295)
T ss_dssp             CS-EEEEEEES-H-------HHHHHHHHHCHHHEEEEEEEEEE
T ss_pred             cccCCEEEECCCH-------HHHHHHHHHHHHhhCCCCEEEEc
Confidence            4789999887633       34678889999999999999998

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.41  E-value=1.7e-12  Score=108.92  Aligned_cols=109  Identities=17%  Similarity=0.182  Sum_probs=81.2

Q ss_pred             HHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccC
Q 025775           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA  103 (248)
Q Consensus        24 li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  103 (248)
                      .++.+..++.+|||+|||+|-++...+..+...++|+|++|.+++.|+.....++....+.....+...     ..  ..
T Consensus       155 ~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~-----~~--~~  227 (300)
T COG2264         155 ALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLE-----VP--EN  227 (300)
T ss_pred             HHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchh-----hc--cc
Confidence            355666689999999999999888888889989999999999999999987766532111111111111     11  23


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      ++||+|+++-.       .+.+..+...+.+.|+|||+++++-
T Consensus       228 ~~~DvIVANIL-------A~vl~~La~~~~~~lkpgg~lIlSG  263 (300)
T COG2264         228 GPFDVIVANIL-------AEVLVELAPDIKRLLKPGGRLILSG  263 (300)
T ss_pred             CcccEEEehhh-------HHHHHHHHHHHHHHcCCCceEEEEe
Confidence            69999998762       2336789999999999999999984

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.40  E-value=3.9e-12  Score=103.54  Aligned_cols=114  Identities=11%  Similarity=-0.007  Sum_probs=89.5

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHh-----------cCCCceEEEEEcCCCCCchhh
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN-----------QRKNFIAEFFEADPCAENFET   97 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~-----------~~~~~~~~~~~~d~~~~~~~~   97 (248)
                      .+++.+||..|||.|.++..++..+. +|+|+|+|+.+++.+.+....           .....++.++++|+.+.+...
T Consensus        41 ~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~  119 (226)
T PRK13256         41 INDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA  119 (226)
T ss_pred             CCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence            34678999999999999999999998 799999999999998653210           001235899999998754210


Q ss_pred             hhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775           98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus        98 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                         ...++||+|+-..+++.  .+.+...+.++.+.++|+|||.+++.+.+
T Consensus       120 ---~~~~~fD~VyDra~~~A--lpp~~R~~Y~~~l~~lL~pgg~llll~~~  165 (226)
T PRK13256        120 ---NNLPVFDIWYDRGAYIA--LPNDLRTNYAKMMLEVCSNNTQILLLVME  165 (226)
T ss_pred             ---cccCCcCeeeeehhHhc--CCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence               02368999988888876  57888999999999999999998887543

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.39  E-value=4.9e-12  Score=103.11  Aligned_cols=101  Identities=12%  Similarity=0.021  Sum_probs=78.1

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcC--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~--~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      ..++.+|||||||+|..+..++...  .++|+++|+++.+++.|++++...+. .++.++++|......      ...+|
T Consensus        75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~------~~~~f  147 (215)
T TIGR00080        75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWE------PLAPY  147 (215)
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCc------ccCCC
Confidence            4588999999999999998877653  24699999999999999998876553 358899999855322      24689


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      |+|++......          +.+.+.+.|+|||++++..
T Consensus       148 D~Ii~~~~~~~----------~~~~~~~~L~~gG~lv~~~  177 (215)
T TIGR00080       148 DRIYVTAAGPK----------IPEALIDQLKEGGILVMPV  177 (215)
T ss_pred             CEEEEcCCccc----------ccHHHHHhcCcCcEEEEEE
Confidence            99988765443          2345778899999999864

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.39  E-value=1.5e-11  Score=104.19  Aligned_cols=112  Identities=18%  Similarity=0.193  Sum_probs=83.9

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      ++.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|++.....+...++.++++|+.+. +      +..+||+|
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~-~------~~~~fD~I  193 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA-L------PGRKYDLI  193 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc-c------CCCCccEE
Confidence            4578999999999999888775 33589999999999999999887665444689999998542 2      24579999


Q ss_pred             Eeccc-------------hhh----h----cCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          110 CCFQH-------------LQM----C----FETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       110 ~~~~~-------------l~~----~----~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      +++--             .++    .    -...+....++.++.++|+|||.+++.+...
T Consensus       194 v~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~  254 (284)
T TIGR03533       194 VSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNS  254 (284)
T ss_pred             EECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcC
Confidence            98521             010    0    0112345788999999999999999987654

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.38  E-value=7.1e-13  Score=105.53  Aligned_cols=140  Identities=19%  Similarity=0.281  Sum_probs=99.1

Q ss_pred             CCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEe
Q 025775           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (248)
Q Consensus        32 ~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~  111 (248)
                      -.++||||||||-....+... ..+++|+|||.+|++.|.++---      -.+.++|+..  |.+.  ..+.+||+|++
T Consensus       126 F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg~Y------D~L~~Aea~~--Fl~~--~~~er~DLi~A  194 (287)
T COG4976         126 FRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKGLY------DTLYVAEAVL--FLED--LTQERFDLIVA  194 (287)
T ss_pred             cceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhccch------HHHHHHHHHH--Hhhh--ccCCcccchhh
Confidence            468999999999877777554 34899999999999999876321      1233444311  2111  14678999999


Q ss_pred             ccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHHHhHhhhhCCCCCCCCCCCCCcccCceeEEEeccc
Q 025775          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVE  191 (248)
Q Consensus       112 ~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  191 (248)
                      ..++.|    ...++.++.-+...|+|||.|.+++-+..                                         
T Consensus       195 aDVl~Y----lG~Le~~~~~aa~~L~~gGlfaFSvE~l~-----------------------------------------  229 (287)
T COG4976         195 ADVLPY----LGALEGLFAGAAGLLAPGGLFAFSVETLP-----------------------------------------  229 (287)
T ss_pred             hhHHHh----hcchhhHHHHHHHhcCCCceEEEEecccC-----------------------------------------
Confidence            998888    55688899999999999999998743321                                         


Q ss_pred             CCCCCcceeeeEEEEccCccCCCcceechHHHHHHHHHcCcEEEEecC
Q 025775          192 EEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQN  239 (248)
Q Consensus       192 ~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~G~~~v~~~~  239 (248)
                           ..|.   |-+..    ...|-.+.+.++++++.+||+++....
T Consensus       230 -----~~~~---f~l~p----s~RyAH~~~YVr~~l~~~Gl~~i~~~~  265 (287)
T COG4976         230 -----DDGG---FVLGP----SQRYAHSESYVRALLAASGLEVIAIED  265 (287)
T ss_pred             -----CCCC---eecch----hhhhccchHHHHHHHHhcCceEEEeec
Confidence                 0011   21222    235777888999999999999997654

>PRK14968 putative methyltransferase; Provisional

Probab=99.38  E-value=9.3e-12  Score=98.94  Aligned_cols=112  Identities=17%  Similarity=0.160  Sum_probs=83.4

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCce-EEEEEcCCCCCchhhhhcccCCceeE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFI-AEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      .++.+|||+|||+|..+..++..+ .+++|+|+|+.+++.+++.....+...+ +.++++|+.+..       ...+||+
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~d~   93 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF-------RGDKFDV   93 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc-------cccCceE
Confidence            477899999999999998888774 5999999999999999887765443222 778888875522       2348999


Q ss_pred             EEeccchhh-----------------hcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          109 VCCFQHLQM-----------------CFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       109 V~~~~~l~~-----------------~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      |++......                 ...+......+++++.++|+|||.+++..++.
T Consensus        94 vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~  151 (188)
T PRK14968         94 ILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL  151 (188)
T ss_pred             EEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc
Confidence            987542211                 01123446789999999999999998876643

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.36  E-value=1.4e-11  Score=97.64  Aligned_cols=117  Identities=18%  Similarity=0.211  Sum_probs=85.8

Q ss_pred             HhcCC--CCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC-CchhhhhcccC
Q 025775           27 IYSHP--YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-ENFETQMQEKA  103 (248)
Q Consensus        27 ~~~~~--~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~  103 (248)
                      ..++.  ..-|||||||+|.....+...+. .++|+|||+.|++.|.++--.      -.++.+|+.. .++      .+
T Consensus        44 Lalp~~~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~e------gdlil~DMG~Glpf------rp  110 (270)
T KOG1541|consen   44 LALPGPKSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERELE------GDLILCDMGEGLPF------RP  110 (270)
T ss_pred             hhCCCCCCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhhh------cCeeeeecCCCCCC------CC
Confidence            34443  56799999999987777766664 899999999999999874222      2467777753 233      68


Q ss_pred             CceeEEEeccchhhhcC-------CHHHHHHHHHHHhccccCCcEEEEEe-cChhHHHHHH
Q 025775          104 NQADLVCCFQHLQMCFE-------TEERARRLLQNVSSLLKPGGYFLGIT-PDSSTIWAKY  156 (248)
Q Consensus       104 ~~fD~V~~~~~l~~~~~-------~~~~~~~~l~~~~~~LkpgG~~i~~~-~~~~~~~~~~  156 (248)
                      ++||.|++..++++.+.       +...+..++..+..+|++|+..++.+ |..+.-.+.+
T Consensus       111 GtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i  171 (270)
T KOG1541|consen  111 GTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMI  171 (270)
T ss_pred             CccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHH
Confidence            99999999887776533       34457789999999999999999994 4433333333

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.36  E-value=2.8e-11  Score=103.57  Aligned_cols=110  Identities=18%  Similarity=0.192  Sum_probs=82.6

Q ss_pred             CeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEe
Q 025775           33 VTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (248)
Q Consensus        33 ~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~  111 (248)
                      .+|||+|||+|..+..++.. +..+++|+|+|+.+++.|++.....+...++.++++|+.+. +      +.++||+|++
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-l------~~~~fDlIvs  207 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-L------PGRRYDLIVS  207 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-C------CCCCccEEEE
Confidence            68999999999998888765 34589999999999999999887665444689999997441 1      2457999998


Q ss_pred             ccc------h-------hh----h----cCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          112 FQH------L-------QM----C----FETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       112 ~~~------l-------~~----~----~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      +--      +       ++    .    -...+....+++++.+.|+|||.+++.+...
T Consensus       208 NPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~  266 (307)
T PRK11805        208 NPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS  266 (307)
T ss_pred             CCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC
Confidence            520      0       10    0    0012345788999999999999999976544

>PTZ00146 fibrillarin; Provisional

Probab=99.35  E-value=1.1e-11  Score=103.94  Aligned_cols=105  Identities=14%  Similarity=0.056  Sum_probs=75.3

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      +.++.+|||+|||+|.++..++..  ....|+++|+++.|++.........   .++.++..|+......   .....++
T Consensus       130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~y---~~~~~~v  203 (293)
T PTZ00146        130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQKY---RMLVPMV  203 (293)
T ss_pred             cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhhh---hcccCCC
Confidence            358899999999999999998876  2458999999998664444333221   1378889998653211   1123579


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      |+|++..+      ..++...++.++.++|||||.|++.
T Consensus       204 DvV~~Dva------~pdq~~il~~na~r~LKpGG~~vI~  236 (293)
T PTZ00146        204 DVIFADVA------QPDQARIVALNAQYFLKNGGHFIIS  236 (293)
T ss_pred             CEEEEeCC------CcchHHHHHHHHHHhccCCCEEEEE
Confidence            99988763      2335666778899999999999985

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.34  E-value=1.9e-11  Score=98.24  Aligned_cols=110  Identities=20%  Similarity=0.214  Sum_probs=80.9

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      .++.+|||+|||+|..+..++.. +..+++++|+|+.+++.++++....+. .++.++.+|+.+. +. .   ....+|.
T Consensus        39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~~~~-~~-~---~~~~~d~  112 (196)
T PRK07402         39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSAPEC-LA-Q---LAPAPDR  112 (196)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECchHHH-Hh-h---CCCCCCE
Confidence            47889999999999988887654 346999999999999999988765443 2488888887431 10 1   1234576


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHH
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIW  153 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~  153 (248)
                      +++..        ......+++++.+.|+|||.+++..++.+.+.
T Consensus       113 v~~~~--------~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~  149 (196)
T PRK07402        113 VCIEG--------GRPIKEILQAVWQYLKPGGRLVATASSLEGLY  149 (196)
T ss_pred             EEEEC--------CcCHHHHHHHHHHhcCCCeEEEEEeecHHHHH
Confidence            64422        12357889999999999999999988765443

>PRK04457 spermidine synthase; Provisional

Probab=99.34  E-value=2.7e-11  Score=101.51  Aligned_cols=117  Identities=13%  Similarity=0.085  Sum_probs=83.2

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      +++.+|||||||+|..+..++.. +..+++++|+++.+++.|++.+.......++.++++|+.+  +   +.....+||+
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~--~---l~~~~~~yD~  139 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAE--Y---IAVHRHSTDV  139 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHH--H---HHhCCCCCCE
Confidence            45678999999999988878665 4458999999999999999887543323468899999743  1   1113468999


Q ss_pred             EEeccchhhh-cCCHHHHHHHHHHHhccccCCcEEEEEecChhHH
Q 025775          109 VCCFQHLQMC-FETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (248)
Q Consensus       109 V~~~~~l~~~-~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~  152 (248)
                      |++.. .+.. ....-...++++++.+.|+|||++++...+.+..
T Consensus       140 I~~D~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~  183 (262)
T PRK04457        140 ILVDG-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKR  183 (262)
T ss_pred             EEEeC-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchh
Confidence            98753 1110 0111124789999999999999999875544433

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.34  E-value=3.3e-11  Score=102.27  Aligned_cols=110  Identities=15%  Similarity=0.274  Sum_probs=82.7

Q ss_pred             CeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEe
Q 025775           33 VTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (248)
Q Consensus        33 ~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~  111 (248)
                      .+|||+|||+|..+..++... ..+++|+|+|+.+++.|++.....+...++.++++|+.+. +      ...+||+|++
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~-~------~~~~fDlIvs  188 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP-L------AGQKIDIIVS  188 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc-C------cCCCccEEEE
Confidence            689999999999888887753 3589999999999999999877655444589999998542 2      2347999998


Q ss_pred             cc-------------chhh----h----cCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          112 FQ-------------HLQM----C----FETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       112 ~~-------------~l~~----~----~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      +-             ..++    .    .........+++++.+.|+|||.+++.+.+.
T Consensus       189 NPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~  247 (284)
T TIGR00536       189 NPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW  247 (284)
T ss_pred             CCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence            51             1111    0    0112357789999999999999999886654

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.34  E-value=8.5e-12  Score=102.14  Aligned_cols=134  Identities=17%  Similarity=0.143  Sum_probs=99.4

Q ss_pred             HHHHHHHHhcC--CCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh
Q 025775           20 AKTALIKIYSH--PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE   96 (248)
Q Consensus        20 ~~~~li~~~~~--~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   96 (248)
                      +-..|+..+++  ...+|||||||+|.....++.+ ...+++|+|+++.+.+.|++..+.+++..++.++++|+.+... 
T Consensus        31 ~DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~-  109 (248)
T COG4123          31 TDAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLK-  109 (248)
T ss_pred             cHHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhh-
Confidence            45677888765  5679999999999988888877 4479999999999999999988887777889999999865322 


Q ss_pred             hhhcccCCceeEEEeccchhhh--------------cCCHHHHHHHHHHHhccccCCcEEEEEecCh--hHHHHHHH
Q 025775           97 TQMQEKANQADLVCCFQHLQMC--------------FETEERARRLLQNVSSLLKPGGYFLGITPDS--STIWAKYQ  157 (248)
Q Consensus        97 ~~~~~~~~~fD~V~~~~~l~~~--------------~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~--~~~~~~~~  157 (248)
                       ..  ...+||+|+|+--..-.              ++..-..+.+++.+.++|||||.+.+..+..  ..+.+.++
T Consensus       110 -~~--~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~  183 (248)
T COG4123         110 -AL--VFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLK  183 (248)
T ss_pred             -cc--cccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHH
Confidence             11  23469999996422110              0111236789999999999999999886544  33444444

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.33  E-value=1.9e-11  Score=97.58  Aligned_cols=109  Identities=17%  Similarity=0.131  Sum_probs=75.6

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhc--ccCC
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ--EKAN  104 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~  104 (248)
                      ++++.+|||+|||+|..+..++..  +..+++|+|+|+.+      ..      ..+.++++|+.+......+.  ...+
T Consensus        30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~~------~~i~~~~~d~~~~~~~~~l~~~~~~~   97 (188)
T TIGR00438        30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------PI------ENVDFIRGDFTDEEVLNKIRERVGDD   97 (188)
T ss_pred             cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------cC------CCceEEEeeCCChhHHHHHHHHhCCC
Confidence            458899999999999988877665  33479999999865      11      12778888987643211111  1356


Q ss_pred             ceeEEEeccchhh----hcC---CHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          105 QADLVCCFQHLQM----CFE---TEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       105 ~fD~V~~~~~l~~----~~~---~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      +||+|++..+.+.    ...   ..+....++.++.++|+|||.+++.....
T Consensus        98 ~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~  149 (188)
T TIGR00438        98 KVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQG  149 (188)
T ss_pred             CccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccC
Confidence            7999998654321    111   12345789999999999999999975544

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.33  E-value=3.4e-11  Score=97.90  Aligned_cols=101  Identities=12%  Similarity=0.045  Sum_probs=77.3

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      ..++.+|||+|||+|..+..++... .+++++|+++++++.|++++...+. .++.+.++|..+...      ..++||+
T Consensus        76 ~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~------~~~~fD~  147 (212)
T PRK00312         76 LKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGL-HNVSVRHGDGWKGWP------AYAPFDR  147 (212)
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCC-CceEEEECCcccCCC------cCCCcCE
Confidence            3478899999999999887665554 4899999999999999998876543 238889998754221      2468999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      |++....++          +.+.+.+.|+|||.+++...
T Consensus       148 I~~~~~~~~----------~~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        148 ILVTAAAPE----------IPRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             EEEccCchh----------hhHHHHHhcCCCcEEEEEEc
Confidence            998775544          23456789999999998755

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.32  E-value=3e-11  Score=105.30  Aligned_cols=116  Identities=15%  Similarity=0.098  Sum_probs=87.4

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      .+..+||||||+|..+..++... ...++|+|+++.+++.|.++....+. .++.++++|+...  ...+  +++++|.|
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL-~NV~~i~~DA~~l--l~~~--~~~s~D~I  196 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL-KNLLIINYDARLL--LELL--PSNSVEKI  196 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHh--hhhC--CCCceeEE
Confidence            45689999999999999998773 45899999999999999988776543 3488999998542  1111  46899999


Q ss_pred             EeccchhhhcCCHH---HHHHHHHHHhccccCCcEEEEEecChhHH
Q 025775          110 CCFQHLQMCFETEE---RARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (248)
Q Consensus       110 ~~~~~l~~~~~~~~---~~~~~l~~~~~~LkpgG~~i~~~~~~~~~  152 (248)
                      ++.+...|. ....   ....+++.+.++|+|||.+.+.+-+....
T Consensus       197 ~lnFPdPW~-KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~  241 (390)
T PRK14121        197 FVHFPVPWD-KKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYF  241 (390)
T ss_pred             EEeCCCCcc-ccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHH
Confidence            887654431 1010   12689999999999999999987776544

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=99.32  E-value=1.1e-10  Score=92.81  Aligned_cols=119  Identities=17%  Similarity=0.173  Sum_probs=82.6

Q ss_pred             HHHhcCCCC-eEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh--hc
Q 025775           25 IKIYSHPYV-TVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ--MQ  100 (248)
Q Consensus        25 i~~~~~~~~-~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~  100 (248)
                      +..++++.. +|||||||||.++..++.. +.-..--.|+++..+..-.+.....+...-..-+..|+....-.-.  ..
T Consensus        18 L~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~   97 (204)
T PF06080_consen   18 LKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAP   97 (204)
T ss_pred             HHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccc
Confidence            344555444 5999999999999999887 3347778899988876555544433211001234556655421100  00


Q ss_pred             ccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       101 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      ....+||+|+|...+|.  .+.+..+.+++.+.++|++||.|++-
T Consensus        98 ~~~~~~D~i~~~N~lHI--~p~~~~~~lf~~a~~~L~~gG~L~~Y  140 (204)
T PF06080_consen   98 LSPESFDAIFCINMLHI--SPWSAVEGLFAGAARLLKPGGLLFLY  140 (204)
T ss_pred             cCCCCcceeeehhHHHh--cCHHHHHHHHHHHHHhCCCCCEEEEe
Confidence            12468999999999997  67888999999999999999999874

The function of this family is unknown.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.31  E-value=5.2e-11  Score=99.04  Aligned_cols=110  Identities=21%  Similarity=0.238  Sum_probs=81.6

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      ..+.+|||+|||+|..+..++.. +...++|+|+++.+++.|+......+.. ++.++++|+.+. +      ..++||+
T Consensus        86 ~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~-~------~~~~fD~  157 (251)
T TIGR03534        86 KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEP-L------PGGKFDL  157 (251)
T ss_pred             cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhcc-C------cCCceeE
Confidence            34568999999999999888776 3458999999999999999887665432 488999998652 2      3578999


Q ss_pred             EEeccchh------hhc------C----------CHHHHHHHHHHHhccccCCcEEEEEec
Q 025775          109 VCCFQHLQ------MCF------E----------TEERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       109 V~~~~~l~------~~~------~----------~~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      |++....+      ...      +          .......+++++.++|+|||.+++...
T Consensus       158 Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~  218 (251)
T TIGR03534       158 IVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG  218 (251)
T ss_pred             EEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence            99853221      100      0          012235789999999999999998754

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.30  E-value=6.7e-11  Score=103.82  Aligned_cols=121  Identities=16%  Similarity=0.089  Sum_probs=85.4

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      +++.+|||+|||+|..+..++.. +..+++|+|+|+.|++.|++.....+  .++.++++|+.+..+.     ..++||+
T Consensus       250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g--~rV~fi~gDl~e~~l~-----~~~~FDL  322 (423)
T PRK14966        250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG--ARVEFAHGSWFDTDMP-----SEGKWDI  322 (423)
T ss_pred             CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEcchhccccc-----cCCCccE
Confidence            45679999999999988888764 45689999999999999999876654  3589999998654321     1357999


Q ss_pred             EEeccchhh-----------------h----cCCHHHHHHHHHHHhccccCCcEEEEEecC--hhHHHHHHH
Q 025775          109 VCCFQHLQM-----------------C----FETEERARRLLQNVSSLLKPGGYFLGITPD--SSTIWAKYQ  157 (248)
Q Consensus       109 V~~~~~l~~-----------------~----~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~--~~~~~~~~~  157 (248)
                      |+|+--...                 .    -...+..+.++..+.+.|+|||.+++.+..  .+.+.+.+.
T Consensus       323 IVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~  394 (423)
T PRK14966        323 IVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLA  394 (423)
T ss_pred             EEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHH
Confidence            999542100                 0    011223568888889999999998876433  244444443

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.29  E-value=4.3e-11  Score=84.57  Aligned_cols=103  Identities=24%  Similarity=0.262  Sum_probs=80.1

Q ss_pred             eEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEecc
Q 025775           34 TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQ  113 (248)
Q Consensus        34 ~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~  113 (248)
                      +|+|+|||+|..+..++.....+++++|+++.+++.+++..... ...++.+...|+.+...     ...+++|+|++..
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~d~i~~~~   74 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAAL-LADNVEVLKGDAEELPP-----EADESFDVIISDP   74 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcc-cccceEEEEcChhhhcc-----ccCCceEEEEEcc
Confidence            48999999999988887755569999999999999887433221 22347888888865432     0256899999988


Q ss_pred             chhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          114 HLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       114 ~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      .+++.   .+....+++.+.+.|+|||.++++
T Consensus        75 ~~~~~---~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          75 PLHHL---VEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             ceeeh---hhHHHHHHHHHHHHcCCCCEEEEE
Confidence            76652   667889999999999999999876

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.28  E-value=6.2e-11  Score=99.13  Aligned_cols=118  Identities=19%  Similarity=0.160  Sum_probs=88.0

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      .+.+|||+|||.|.....++... ..+++.+|+|..+++.|+.....++... ..++..|+.+.-        .++||+|
T Consensus       158 ~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~-~~v~~s~~~~~v--------~~kfd~I  228 (300)
T COG2813         158 LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVEN-TEVWASNLYEPV--------EGKFDLI  228 (300)
T ss_pred             CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCc-cEEEEecccccc--------cccccEE
Confidence            45699999999999998888774 4699999999999999999887665321 256677764422        3489999


Q ss_pred             EeccchhhhcCCHH-HHHHHHHHHhccccCCcEEEEEecChhHHHHHHH
Q 025775          110 CCFQHLQMCFETEE-RARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ  157 (248)
Q Consensus       110 ~~~~~l~~~~~~~~-~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~  157 (248)
                      +|+--+|.-..... -..+++....+.|++||.+.+..-....+-..+.
T Consensus       229 isNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~  277 (300)
T COG2813         229 ISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLK  277 (300)
T ss_pred             EeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHH
Confidence            99988885222221 2458999999999999999988654444444444

>PRK00811 spermidine synthase; Provisional

Probab=99.28  E-value=4.7e-11  Score=101.18  Aligned_cols=113  Identities=13%  Similarity=0.093  Sum_probs=83.1

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcC----CCceEEEEEcCCCCCchhhhhcccCC
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR----KNFIAEFFEADPCAENFETQMQEKAN  104 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~  104 (248)
                      +.+.+||+||||+|..+..+++. +..+|+++|+++.+++.|++.+...+    ...+++++.+|+..  +   +....+
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~--~---l~~~~~  149 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIK--F---VAETEN  149 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHH--H---HhhCCC
Confidence            35679999999999998888776 56799999999999999998775321    12458899999743  2   222357


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      +||+|++...-++.....-...++++.+.+.|+|||++++...
T Consensus       150 ~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~  192 (283)
T PRK00811        150 SFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG  192 (283)
T ss_pred             cccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence            8999998654333111111247889999999999999998643

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.28  E-value=9.2e-11  Score=98.99  Aligned_cols=109  Identities=20%  Similarity=0.220  Sum_probs=80.9

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      .++.+|||+|||+|..+..++... ..+++|+|+|+.+++.|++... .....++.++++|+....       ..++||+
T Consensus       107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~~-------~~~~fD~  178 (275)
T PRK09328        107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEPL-------PGGRFDL  178 (275)
T ss_pred             cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCcC-------CCCceeE
Confidence            467899999999999888887763 4689999999999999998876 222235889999984421       2468999


Q ss_pred             EEeccchhh------h----------------cCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775          109 VCCFQHLQM------C----------------FETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       109 V~~~~~l~~------~----------------~~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      |++.....-      .                ....+....+++++.++|+|||.+++.+
T Consensus       179 Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~  238 (275)
T PRK09328        179 IVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI  238 (275)
T ss_pred             EEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence            988421110      0                0123446788999999999999999875

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.28  E-value=1.9e-10  Score=89.81  Aligned_cols=124  Identities=15%  Similarity=0.133  Sum_probs=94.3

Q ss_pred             HHHHHHHHHh-cCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh
Q 025775           19 FAKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE   96 (248)
Q Consensus        19 ~~~~~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   96 (248)
                      -++-..+.++ ..|+.+++|+|||||..+..|+.. +..+++++|-++++++..++..+..+ ..++..+.+|+.+.   
T Consensus        21 EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg-~~n~~vv~g~Ap~~---   96 (187)
T COG2242          21 EIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG-VDNLEVVEGDAPEA---   96 (187)
T ss_pred             HHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC-CCcEEEEeccchHh---
Confidence            3444555555 458999999999999999999854 45699999999999998887776655 34588999987442   


Q ss_pred             hhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHH
Q 025775           97 TQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ  157 (248)
Q Consensus        97 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~  157 (248)
                        +. ...++|.|++..+        ...+.+++.+...|+|||.+++....-+.+...+.
T Consensus        97 --L~-~~~~~daiFIGGg--------~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~  146 (187)
T COG2242          97 --LP-DLPSPDAIFIGGG--------GNIEEILEAAWERLKPGGRLVANAITLETLAKALE  146 (187)
T ss_pred             --hc-CCCCCCEEEECCC--------CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHH
Confidence              11 1227999988775        23788999999999999999998776665555443

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=99.28  E-value=2.6e-11  Score=96.91  Aligned_cols=106  Identities=15%  Similarity=0.124  Sum_probs=78.2

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      +..+.||.|+|-|+.+..++..-+..|..+|+.+..++.|++...... ..-..+++..+.+-..      .+++||+|.
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f~P------~~~~YDlIW  127 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDFTP------EEGKYDLIW  127 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG----------TT-EEEEE
T ss_pred             CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhccC------CCCcEeEEE
Confidence            357899999999999988877667899999999999999997654411 1225677777644222      247999999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +++++.|  .+.+++.++++++...|+|+|++++-
T Consensus       128 ~QW~lgh--LTD~dlv~fL~RCk~~L~~~G~IvvK  160 (218)
T PF05891_consen  128 IQWCLGH--LTDEDLVAFLKRCKQALKPNGVIVVK  160 (218)
T ss_dssp             EES-GGG--S-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ehHhhcc--CCHHHHHHHHHHHHHhCcCCcEEEEE
Confidence            9999988  78999999999999999999999874

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.27  E-value=2.8e-11  Score=98.48  Aligned_cols=110  Identities=25%  Similarity=0.198  Sum_probs=83.7

Q ss_pred             hcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHh--c----C-----CCceEEEEEcCCCCCchh
Q 025775           28 YSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN--Q----R-----KNFIAEFFEADPCAENFE   96 (248)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~--~----~-----~~~~~~~~~~d~~~~~~~   96 (248)
                      ..+++.+||..|||.|.++..++..+. +|+|+|+|+.+++.+.+....  .    .     ...++.++++|+.+.+..
T Consensus        34 ~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~  112 (218)
T PF05724_consen   34 ALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE  112 (218)
T ss_dssp             TTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred             CCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence            355778999999999999999999888 999999999999998554321  0    0     122478999999774431


Q ss_pred             hhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775           97 TQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus        97 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                           ..++||+|.-..+++-  .+.+......+.+.++|+|||.+++.
T Consensus       113 -----~~g~fD~iyDr~~l~A--lpp~~R~~Ya~~l~~ll~p~g~~lLi  154 (218)
T PF05724_consen  113 -----DVGKFDLIYDRTFLCA--LPPEMRERYAQQLASLLKPGGRGLLI  154 (218)
T ss_dssp             -----CHHSEEEEEECSSTTT--S-GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred             -----hcCCceEEEEeccccc--CCHHHHHHHHHHHHHHhCCCCcEEEE
Confidence                 2357999988877764  56788999999999999999994443

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.24  E-value=1.2e-10  Score=106.04  Aligned_cols=109  Identities=15%  Similarity=0.156  Sum_probs=79.9

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      ++.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+......+...++.++++|+.+. +      ..++||+|
T Consensus       138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~-~------~~~~fDlI  210 (506)
T PRK01544        138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN-I------EKQKFDFI  210 (506)
T ss_pred             CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh-C------cCCCccEE
Confidence            3468999999999988877665 44699999999999999998876655444588899987431 1      24589999


Q ss_pred             Eeccchh--------------h----h-c---CCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775          110 CCFQHLQ--------------M----C-F---ETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       110 ~~~~~l~--------------~----~-~---~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      +|+--..              +    . +   ...+....+++++.++|+|||.+++.+
T Consensus       211 vsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi  269 (506)
T PRK01544        211 VSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI  269 (506)
T ss_pred             EECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence            9842100              0    0 0   122345678899999999999998874

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.22  E-value=1.8e-10  Score=101.65  Aligned_cols=116  Identities=15%  Similarity=0.122  Sum_probs=82.4

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCC-ceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      ++.+|||+|||+|.++...+..+..+++++|+|+.+++.|++....++.. .++.++++|+.+.  ...+....++||+|
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~--l~~~~~~~~~fDlV  297 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKL--LRTYRDRGEKFDVI  297 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHH--HHHHHhcCCCCCEE
Confidence            57899999999999877666656669999999999999999988776543 3588999998542  11111124589999


Q ss_pred             Eeccchh-----hhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775          110 CCFQHLQ-----MCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       110 ~~~~~l~-----~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      ++.--..     ...........++..+.++|+|||.++....+
T Consensus       298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs  341 (396)
T PRK15128        298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS  341 (396)
T ss_pred             EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            9863210     00011123556677889999999999876443

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.22  E-value=1.9e-10  Score=94.92  Aligned_cols=106  Identities=11%  Similarity=0.072  Sum_probs=82.1

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhc-c-cCCce
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ-E-KANQA  106 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~-~~~~f  106 (248)
                      ++.+|||+|||+|..+..++..  +.++++++|+++++++.|++.+...+...+++++++|+.+. + +.+. . ..++|
T Consensus        68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~-L-~~l~~~~~~~~f  145 (234)
T PLN02781         68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSA-L-DQLLNNDPKPEF  145 (234)
T ss_pred             CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH-H-HHHHhCCCCCCC
Confidence            6789999999999877777654  34699999999999999999998877666799999998542 1 1111 1 14689


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      |+|++..       ..+.....++.+.+.|+|||++++.
T Consensus       146 D~VfiDa-------~k~~y~~~~~~~~~ll~~GG~ii~d  177 (234)
T PLN02781        146 DFAFVDA-------DKPNYVHFHEQLLKLVKVGGIIAFD  177 (234)
T ss_pred             CEEEECC-------CHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            9997754       2344667889999999999999875

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.19  E-value=3.8e-10  Score=90.21  Aligned_cols=107  Identities=19%  Similarity=0.250  Sum_probs=69.8

Q ss_pred             CCCeEEEEcCCCCccHhHHH----H---c--C-CCeEEEEeCChHHHHHHHHH-----------------HH--hcC---
Q 025775           31 PYVTVCDLYCGAGVDVDKWE----T---A--L-IANYIGIDVATSGIGEARDT-----------------WE--NQR---   78 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~----~---~--~-~~~v~giDis~~~l~~a~~~-----------------~~--~~~---   78 (248)
                      +..+||..||+||.-.--++    .   .  + .-+++|+|+|+.+|+.|++-                 +=  ..+   
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            56799999999996443222    2   1  1 12899999999999999871                 10  000   


Q ss_pred             -----CCceEEEEEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775           79 -----KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus        79 -----~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                           ....+.|.+.|+.+...      ..+.||+|+|-.++.|  .+.+...++++.+++.|+|||+|++.
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~------~~~~fD~I~CRNVlIY--F~~~~~~~vl~~l~~~L~pgG~L~lG  174 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDP------PFGRFDLIFCRNVLIY--FDPETQQRVLRRLHRSLKPGGYLFLG  174 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S------------EEEEEE-SSGGG--S-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred             eEChHHcCceEEEecccCCCCc------ccCCccEEEecCEEEE--eCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence                 01237899999877222      3678999999999998  56888999999999999999999985

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.18  E-value=3.3e-10  Score=97.31  Aligned_cols=101  Identities=11%  Similarity=0.015  Sum_probs=75.6

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcC--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~--~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      .+++.+|||+|||+|..+..++...  .+.|+++|+++++++.|+++....+. .++.++++|+.....      ...+|
T Consensus        78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~------~~~~f  150 (322)
T PRK13943         78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVP------EFAPY  150 (322)
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhccc------ccCCc
Confidence            4578899999999999888887653  23799999999999999988766543 347888998754322      23579


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      |+|++..+.+.          ....+.+.|+|||.+++..
T Consensus       151 D~Ii~~~g~~~----------ip~~~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        151 DVIFVTVGVDE----------VPETWFTQLKEGGRVIVPI  180 (322)
T ss_pred             cEEEECCchHH----------hHHHHHHhcCCCCEEEEEe
Confidence            99998765443          2234567899999988753

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.18  E-value=2.6e-10  Score=89.45  Aligned_cols=109  Identities=12%  Similarity=0.034  Sum_probs=79.0

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      ..++.+|||+|||+|..+..++... .+++++|+++.+++.+++++...   .+++++++|+.+..+      ...+||.
T Consensus        11 ~~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~~---~~v~ii~~D~~~~~~------~~~~~d~   80 (169)
T smart00650       11 LRPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAAA---DNLTVIHGDALKFDL------PKLQPYK   80 (169)
T ss_pred             CCCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhccC---CCEEEEECchhcCCc------cccCCCE
Confidence            3467899999999999999998774 58999999999999998887542   248899999977654      2446999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHH
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~  152 (248)
                      |++..-.|.   ..+.+..++++.  .+.++|.+++....++.+
T Consensus        81 vi~n~Py~~---~~~~i~~~l~~~--~~~~~~~l~~q~e~a~rl  119 (169)
T smart00650       81 VVGNLPYNI---STPILFKLLEEP--PAFRDAVLMVQKEVARRL  119 (169)
T ss_pred             EEECCCccc---HHHHHHHHHhcC--CCcceEEEEEEHHHhHHh
Confidence            988654442   234455555432  245889998875444433

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.16  E-value=8.1e-10  Score=92.07  Aligned_cols=110  Identities=20%  Similarity=0.259  Sum_probs=78.7

Q ss_pred             CCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        32 ~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      +.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|++.....+    ..++++|+.+... ..   ..++||+|+
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~-~~---~~~~fDlVv  158 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALP-TA---LRGRVDILA  158 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcc-hh---cCCCEeEEE
Confidence            458999999999998888765 33489999999999999998876654    4688898754211 00   135799999


Q ss_pred             eccchh------h------------hc----CCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          111 CFQHLQ------M------------CF----ETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       111 ~~~~l~------~------------~~----~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      ++--..      .            .+    ...+....++..+.++|+|||.+++.+...
T Consensus       159 ~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~  219 (251)
T TIGR03704       159 ANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER  219 (251)
T ss_pred             ECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc
Confidence            863111      0            00    112235688899999999999999886543

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.15  E-value=6.1e-10  Score=100.27  Aligned_cols=109  Identities=24%  Similarity=0.165  Sum_probs=80.8

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      ++.+|||+|||+|+.+..++..  +.++++|+|+|+.+++.++++....+. .++.++++|+....       .+.+||+
T Consensus       250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~-~~v~~~~~Da~~~~-------~~~~fD~  321 (445)
T PRK14904        250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI-TIIETIEGDARSFS-------PEEQPDA  321 (445)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC-CeEEEEeCcccccc-------cCCCCCE
Confidence            7889999999999988777653  335899999999999999998876653 25889999986532       2468999


Q ss_pred             EEec----cchh--------hhcCCHH-------HHHHHHHHHhccccCCcEEEEEecC
Q 025775          109 VCCF----QHLQ--------MCFETEE-------RARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       109 V~~~----~~l~--------~~~~~~~-------~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      |++.    ..-+        + ..+.+       ....++.++.+.|+|||+++..+..
T Consensus       322 Vl~D~Pcsg~g~~~r~p~~~~-~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs  379 (445)
T PRK14904        322 ILLDAPCTGTGVLGRRAELRW-KLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCS  379 (445)
T ss_pred             EEEcCCCCCcchhhcCcchhh-cCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            9852    1111        1 01222       2357899999999999999988543

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.15  E-value=2.2e-10  Score=92.63  Aligned_cols=102  Identities=14%  Similarity=0.105  Sum_probs=73.8

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      +.|+.+|||||||+|..+..++..  ....|+++|+.+...+.|++++...+. .++.++++|......      ...+|
T Consensus        70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~-~nv~~~~gdg~~g~~------~~apf  142 (209)
T PF01135_consen   70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI-DNVEVVVGDGSEGWP------EEAPF  142 (209)
T ss_dssp             C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT-HSEEEEES-GGGTTG------GG-SE
T ss_pred             cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc-CceeEEEcchhhccc------cCCCc
Confidence            679999999999999988777665  334799999999999999999876542 258999999744221      24689


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      |.|++..+...          .-..+.+.|++||++++.+-
T Consensus       143 D~I~v~~a~~~----------ip~~l~~qL~~gGrLV~pi~  173 (209)
T PF01135_consen  143 DRIIVTAAVPE----------IPEALLEQLKPGGRLVAPIG  173 (209)
T ss_dssp             EEEEESSBBSS------------HHHHHTEEEEEEEEEEES
T ss_pred             CEEEEeeccch----------HHHHHHHhcCCCcEEEEEEc
Confidence            99999876543          22346678999999998643

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.15  E-value=4.6e-10  Score=106.16  Aligned_cols=112  Identities=15%  Similarity=0.153  Sum_probs=85.6

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCC-ceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      ++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++....++.. .++.++++|+.+  +...   ..++||+|
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~--~l~~---~~~~fDlI  612 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLA--WLKE---AREQFDLI  612 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHH--HHHH---cCCCcCEE
Confidence            47899999999999999988877778999999999999999988776543 368999999844  1111   24689999


Q ss_pred             Eeccch-------hhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775          110 CCFQHL-------QMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       110 ~~~~~l-------~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      ++.--.       ...+....+...++..+.++|+|||.+++...
T Consensus       613 ilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~  657 (702)
T PRK11783        613 FIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN  657 (702)
T ss_pred             EECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            985311       01122345567889999999999999987643

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.15  E-value=1e-09  Score=98.28  Aligned_cols=111  Identities=17%  Similarity=0.141  Sum_probs=81.4

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCC-CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~-~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      .++.+|||+|||+|..+..++.... ..++++|+++.+++.++++....+.  .+.++++|+.+....  .  ..++||.
T Consensus       243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~--~~~~~~~D~~~~~~~--~--~~~~fD~  316 (427)
T PRK10901        243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL--KATVIVGDARDPAQW--W--DGQPFDR  316 (427)
T ss_pred             CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEcCcccchhh--c--ccCCCCE
Confidence            3788999999999999888877633 5899999999999999998876553  367889998653210  0  2467999


Q ss_pred             EEeccch------------hhhcCCHH-------HHHHHHHHHhccccCCcEEEEEec
Q 025775          109 VCCFQHL------------QMCFETEE-------RARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       109 V~~~~~l------------~~~~~~~~-------~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      |++....            ++ ..+.+       ....++..+.+.|+|||.++.++.
T Consensus       317 Vl~D~Pcs~~G~~~~~p~~~~-~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc  373 (427)
T PRK10901        317 ILLDAPCSATGVIRRHPDIKW-LRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC  373 (427)
T ss_pred             EEECCCCCcccccccCccccc-cCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            9853211            01 01222       235789999999999999997753

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.13  E-value=6.5e-10  Score=93.38  Aligned_cols=111  Identities=14%  Similarity=0.058  Sum_probs=80.0

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      .++.+|||+|||+|+.+..++..  +.+.|+++|+++.+++.++++.+..+. .++.+.+.|+.....      ..+.||
T Consensus        70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~-~~v~~~~~D~~~~~~------~~~~fD  142 (264)
T TIGR00446        70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV-LNVAVTNFDGRVFGA------AVPKFD  142 (264)
T ss_pred             CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-CcEEEecCCHHHhhh------hccCCC
Confidence            47889999999999999887664  235899999999999999998877653 247888888754222      235699


Q ss_pred             EEEecc------chhhh-----cCCHH-------HHHHHHHHHhccccCCcEEEEEec
Q 025775          108 LVCCFQ------HLQMC-----FETEE-------RARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       108 ~V~~~~------~l~~~-----~~~~~-------~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      .|++..      .+..-     ..+.+       ...++++++.++|||||+++.++.
T Consensus       143 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc  200 (264)
T TIGR00446       143 AILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC  200 (264)
T ss_pred             EEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            998632      11100     01111       235699999999999999988743

>PHA03411 putative methyltransferase; Provisional

Probab=99.13  E-value=3.6e-10  Score=94.00  Aligned_cols=102  Identities=14%  Similarity=0.025  Sum_probs=75.2

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      ++.+|||+|||+|..+..++... ..+++|+|+|+.|++.++++..      ++.++++|+.+..       ...+||+|
T Consensus        64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~------~v~~v~~D~~e~~-------~~~kFDlI  130 (279)
T PHA03411         64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP------EAEWITSDVFEFE-------SNEKFDVV  130 (279)
T ss_pred             cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc------CCEEEECchhhhc-------ccCCCcEE
Confidence            45789999999998877776542 4589999999999999987642      3778999986532       24689999


Q ss_pred             EeccchhhhcCC-HHH---------------HHHHHHHHhccccCCcEEEEE
Q 025775          110 CCFQHLQMCFET-EER---------------ARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       110 ~~~~~l~~~~~~-~~~---------------~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +++-.++..-.. ...               ...++.....+|+|+|.+.+.
T Consensus       131 IsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~  182 (279)
T PHA03411        131 ISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA  182 (279)
T ss_pred             EEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence            997655541110 011               356778889999999977666

>PRK01581 speE spermidine synthase; Validated

Probab=99.12  E-value=1.7e-09  Score=93.29  Aligned_cols=113  Identities=14%  Similarity=0.080  Sum_probs=79.3

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHH--HH---hcC-CCceEEEEEcCCCCCchhhhhccc
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDT--WE---NQR-KNFIAEFFEADPCAENFETQMQEK  102 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~--~~---~~~-~~~~~~~~~~d~~~~~~~~~~~~~  102 (248)
                      +...+||+||||+|..+..+++.+ ..+++++|+++++++.|+..  +.   ... ...++.++.+|+..  +   +...
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~--f---L~~~  223 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKE--F---LSSP  223 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHH--H---HHhc
Confidence            456799999999999888777764 56999999999999999962  11   111 12468899999743  2   2224


Q ss_pred             CCceeEEEeccchhhh-cCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775          103 ANQADLVCCFQHLQMC-FETEERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       103 ~~~fD~V~~~~~l~~~-~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      .++||+|++...-... ....-...++++.+.+.|+|||++++...
T Consensus       224 ~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~  269 (374)
T PRK01581        224 SSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN  269 (374)
T ss_pred             CCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence            5689999987421100 00112246799999999999999988743

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=8.3e-10  Score=87.99  Aligned_cols=107  Identities=14%  Similarity=0.110  Sum_probs=81.5

Q ss_pred             HHHHHh-cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc
Q 025775           23 ALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE  101 (248)
Q Consensus        23 ~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  101 (248)
                      .+++.. ..++.+|||||||+|..+.-++...- +|+.+|+.+...+.|++++...+.. ++.+.++|...-.-      
T Consensus        63 ~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gDG~~G~~------  134 (209)
T COG2518          63 RMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYE-NVTVRHGDGSKGWP------  134 (209)
T ss_pred             HHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEECCcccCCC------
Confidence            344444 55899999999999998877766544 9999999999999999999887642 38999999765332      


Q ss_pred             cCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775          102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       102 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      ...+||.|++..+.-.          +-+.+.+.|++||++++-.-
T Consensus       135 ~~aPyD~I~Vtaaa~~----------vP~~Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         135 EEAPYDRIIVTAAAPE----------VPEALLDQLKPGGRLVIPVG  170 (209)
T ss_pred             CCCCcCEEEEeeccCC----------CCHHHHHhcccCCEEEEEEc
Confidence            3578999988775433          22345678999999998643

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.12  E-value=1.4e-09  Score=91.92  Aligned_cols=115  Identities=20%  Similarity=0.238  Sum_probs=83.1

Q ss_pred             eEEEEcCCCCccHhHHHHcCC-CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEec
Q 025775           34 TVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCF  112 (248)
Q Consensus        34 ~VLDlGcG~G~~~~~l~~~~~-~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~  112 (248)
                      +|||+|||+|..+..++.... .+|+|+|+|+.+++.|+.....++. .++.+++.|....-        .++||+|+|+
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~~--------~~~fDlIVsN  183 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEPL--------RGKFDLIVSN  183 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeeccccc--------CCceeEEEeC
Confidence            799999999999988887744 5999999999999999998887764 44566666764421        3489999985


Q ss_pred             cch------hh------------h---cCCHHHHHHHHHHHhccccCCcEEEEEec-Ch-hHHHHHHH
Q 025775          113 QHL------QM------------C---FETEERARRLLQNVSSLLKPGGYFLGITP-DS-STIWAKYQ  157 (248)
Q Consensus       113 ~~l------~~------------~---~~~~~~~~~~l~~~~~~LkpgG~~i~~~~-~~-~~~~~~~~  157 (248)
                      --.      +.            +   ....+....++.++.+.|+|||.+++-.- +. ..+.+.+.
T Consensus       184 PPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~  251 (280)
T COG2890         184 PPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFE  251 (280)
T ss_pred             CCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHH
Confidence            310      00            0   01234567899999999999999988854 33 44444443

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.11  E-value=1.1e-09  Score=98.17  Aligned_cols=113  Identities=17%  Similarity=0.102  Sum_probs=82.2

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      .++.+|||+|||+|+.+..++..  +.++++++|+++.+++.++++....+.. .+.+.++|+...+-  .   ..++||
T Consensus       236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~--~---~~~~fD  309 (431)
T PRK14903        236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTE--Y---VQDTFD  309 (431)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhh--h---hhccCC
Confidence            47889999999999988877765  3469999999999999999988776542 47889999865321  1   246799


Q ss_pred             EEEeccc---hhhhc--------CCH-------HHHHHHHHHHhccccCCcEEEEEecC
Q 025775          108 LVCCFQH---LQMCF--------ETE-------ERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       108 ~V~~~~~---l~~~~--------~~~-------~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      .|++..-   +...-        .+.       ....+++.++.+.|+|||+++.++..
T Consensus       310 ~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs  368 (431)
T PRK14903        310 RILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT  368 (431)
T ss_pred             EEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            9986321   11100        111       13467899999999999999888544

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=99.11  E-value=2.7e-10  Score=91.02  Aligned_cols=112  Identities=21%  Similarity=0.297  Sum_probs=93.2

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      ....++|||||.|.....+...+..+++.+|.|..|++.++..- .  ........++|-...++      .++++|+|+
T Consensus        72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q-d--p~i~~~~~v~DEE~Ldf------~ens~DLii  142 (325)
T KOG2940|consen   72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ-D--PSIETSYFVGDEEFLDF------KENSVDLII  142 (325)
T ss_pred             hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC-C--CceEEEEEecchhcccc------cccchhhhh
Confidence            34679999999999999998889999999999999999887532 1  22456778888766666      689999999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHH
Q 025775          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAK  155 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~  155 (248)
                      ++.++||    ..++...+.+++..|||+|.|+.+...++.++..
T Consensus       143 sSlslHW----~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyEL  183 (325)
T KOG2940|consen  143 SSLSLHW----TNDLPGSMIQCKLALKPDGLFIASMLGGDTLYEL  183 (325)
T ss_pred             hhhhhhh----hccCchHHHHHHHhcCCCccchhHHhccccHHHH
Confidence            9999998    4457788899999999999999998888777654

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.10  E-value=1.4e-09  Score=97.46  Aligned_cols=114  Identities=15%  Similarity=0.093  Sum_probs=80.5

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      .++.+|||+|||+|+.+..++.. +.++++|+|+++.+++.++++....+...++.+..+|.......  .  ..++||.
T Consensus       237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~--~--~~~~fD~  312 (426)
T TIGR00563       237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQW--A--ENEQFDR  312 (426)
T ss_pred             CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccc--c--cccccCE
Confidence            37889999999999999888765 34699999999999999999887766433344466666443210  0  2467999


Q ss_pred             EEec------cchhhhc-----CCHH-------HHHHHHHHHhccccCCcEEEEEec
Q 025775          109 VCCF------QHLQMCF-----ETEE-------RARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       109 V~~~------~~l~~~~-----~~~~-------~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      |++.      ..++..-     .+.+       ...+++.++.++|||||.++.++.
T Consensus       313 VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc  369 (426)
T TIGR00563       313 ILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC  369 (426)
T ss_pred             EEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            9853      2222100     0111       246899999999999999998844

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.10  E-value=2.8e-09  Score=88.22  Aligned_cols=131  Identities=20%  Similarity=0.141  Sum_probs=85.5

Q ss_pred             hhHhHHHHHHHHHhcC---CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcC-------------
Q 025775           15 RLYEFAKTALIKIYSH---PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR-------------   78 (248)
Q Consensus        15 ~~~~~~~~~li~~~~~---~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~-------------   78 (248)
                      .+..|....+.+.+.+   ++.++||||||+--.-..-+...+.+++..|.++..++..++..+..+             
T Consensus        37 ~~~~~~L~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~  116 (256)
T PF01234_consen   37 EILLFFLKNLHETFSSGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCE  116 (256)
T ss_dssp             HHHHHHHHHHHHHHHTSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHh
Confidence            3455555566666653   567999999998543222222355689999999999887665332210             


Q ss_pred             ---C-----------CceE-EEEEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEE
Q 025775           79 ---K-----------NFIA-EFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (248)
Q Consensus        79 ---~-----------~~~~-~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i  143 (248)
                         .           ...+ ..+.+|+++.+........+.+||+|++.+++..+..+.+....+++++.++|||||+|+
T Consensus       117 lEg~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Li  196 (256)
T PF01234_consen  117 LEGKREKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLI  196 (256)
T ss_dssp             HTTSSSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             ccCCcchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEE
Confidence               0           0012 577889887654211000134699999999999999999999999999999999999999


Q ss_pred             EE
Q 025775          144 GI  145 (248)
Q Consensus       144 ~~  145 (248)
                      +.
T Consensus       197 l~  198 (256)
T PF01234_consen  197 LA  198 (256)
T ss_dssp             EE
T ss_pred             EE
Confidence            87

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.09  E-value=3.1e-09  Score=87.08  Aligned_cols=148  Identities=17%  Similarity=0.114  Sum_probs=98.2

Q ss_pred             CCcccchhhhhHhHHHHHHHHHhcCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEE
Q 025775            6 IPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAE   84 (248)
Q Consensus         6 ~~r~~~~~~~~~~~~~~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~   84 (248)
                      ++|.++-  .+..||-..+-+.-..++..+||+|||+|..+..++.. +...++++|.|+.++..|.+.....+....+.
T Consensus       125 IPRpETE--E~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~  202 (328)
T KOG2904|consen  125 IPRPETE--EWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIE  202 (328)
T ss_pred             ecCccHH--HHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceE
Confidence            5777776  33344444443333446678999999999998888765 55699999999999999998877665555577


Q ss_pred             EEEcCCCCCchhhhhcccCCceeEEEeccch--h--------------------hhcCCHHHHHHHHHHHhccccCCcEE
Q 025775           85 FFEADPCAENFETQMQEKANQADLVCCFQHL--Q--------------------MCFETEERARRLLQNVSSLLKPGGYF  142 (248)
Q Consensus        85 ~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l--~--------------------~~~~~~~~~~~~l~~~~~~LkpgG~~  142 (248)
                      .++.++....+.+. +...+++|+++|+--.  +                    .-.+..+.+..++.-+.++|+|||.+
T Consensus       203 v~~~~me~d~~~~~-~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~  281 (328)
T KOG2904|consen  203 VIHNIMESDASDEH-PLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFE  281 (328)
T ss_pred             EEeccccccccccc-ccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeE
Confidence            77665554433321 1146899999885311  1                    00122344567788889999999999


Q ss_pred             EEEec---ChhHHHHHH
Q 025775          143 LGITP---DSSTIWAKY  156 (248)
Q Consensus       143 i~~~~---~~~~~~~~~  156 (248)
                      .+.+.   ....+.+..
T Consensus       282 ~le~~~~~~~~~lv~~~  298 (328)
T KOG2904|consen  282 QLELVERKEHSYLVRIW  298 (328)
T ss_pred             EEEecccccCcHHHHHH
Confidence            98854   334444433

>TIGR00417 speE spermidine synthase

Probab=99.09  E-value=1.2e-09  Score=92.11  Aligned_cols=111  Identities=11%  Similarity=0.078  Sum_probs=79.3

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcC---CCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           31 PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      .+.+||+||||+|..+..++... ..+++++|+++.+++.|++.+....   ...+++++.+|...     .+....++|
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~-----~l~~~~~~y  146 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFK-----FLADTENTF  146 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHH-----HHHhCCCCc
Confidence            45699999999999888777664 5689999999999999998764321   11246777777632     122235789


Q ss_pred             eEEEeccchhhhcCCHHH--HHHHHHHHhccccCCcEEEEEecC
Q 025775          107 DLVCCFQHLQMCFETEER--ARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~--~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      |+|++......  .....  ..++++.+.+.|+|||++++...+
T Consensus       147 DvIi~D~~~~~--~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~  188 (270)
T TIGR00417       147 DVIIVDSTDPV--GPAETLFTKEFYELLKKALNEDGIFVAQSES  188 (270)
T ss_pred             cEEEEeCCCCC--CcccchhHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            99988654222  11122  468899999999999999987443

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.09  E-value=1.7e-09  Score=97.03  Aligned_cols=114  Identities=18%  Similarity=0.151  Sum_probs=81.7

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      .++.+|||+|||+|+.+..++..  +.+.++++|+++.+++.++++....+.. ++.++++|+....-.  .....++||
T Consensus       251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~~--~~~~~~~fD  327 (434)
T PRK14901        251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLEL--KPQWRGYFD  327 (434)
T ss_pred             CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhcccc--cccccccCC
Confidence            37889999999999999888765  3458999999999999999988776532 488999998653210  000246899


Q ss_pred             EEEecc------chhhhc-----CCHHH-------HHHHHHHHhccccCCcEEEEEe
Q 025775          108 LVCCFQ------HLQMCF-----ETEER-------ARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       108 ~V~~~~------~l~~~~-----~~~~~-------~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      .|++..      +++.--     .+.++       ..+++.++.++|||||+++.++
T Consensus       328 ~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvyst  384 (434)
T PRK14901        328 RILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYAT  384 (434)
T ss_pred             EEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            998632      222100     01111       4688999999999999988664

>PLN02366 spermidine synthase

Probab=99.08  E-value=1.5e-09  Score=92.83  Aligned_cols=112  Identities=12%  Similarity=0.081  Sum_probs=81.6

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcC---CCceEEEEEcCCCCCchhhhhcc-cC
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQE-KA  103 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~-~~  103 (248)
                      .++..+||+||||.|..+..+++.+ ..+++.+|+++.+++.|++.+...+   ...+++++.+|+..  +   +.. ..
T Consensus        89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~--~---l~~~~~  163 (308)
T PLN02366         89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVE--F---LKNAPE  163 (308)
T ss_pred             CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHH--H---HhhccC
Confidence            3467899999999999998887764 4689999999999999999775421   12368999999743  1   111 24


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      ++||+|++...-+......--..++++.+.+.|+|||+++..
T Consensus       164 ~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q  205 (308)
T PLN02366        164 GTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ  205 (308)
T ss_pred             CCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence            689999986543321111112467899999999999999875

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.08  E-value=2.6e-09  Score=96.25  Aligned_cols=112  Identities=16%  Similarity=0.077  Sum_probs=81.5

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      .++.+|||+|||+|..+..++..  +.+.++++|+++.+++.++++....+.. ++.++++|+.....  .   ..++||
T Consensus       249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~--~---~~~~fD  322 (444)
T PRK14902        249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHE--K---FAEKFD  322 (444)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccc--h---hcccCC
Confidence            47789999999999999888765  3469999999999999999888766542 38899999865321  0   136799


Q ss_pred             EEEeccchhh--h---------cCCHHH-------HHHHHHHHhccccCCcEEEEEec
Q 025775          108 LVCCFQHLQM--C---------FETEER-------ARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       108 ~V~~~~~l~~--~---------~~~~~~-------~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      +|++......  .         ..+..+       ...++.++.++|||||.++.++.
T Consensus       323 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystc  380 (444)
T PRK14902        323 KILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTC  380 (444)
T ss_pred             EEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence            9987532100  0         011122       35689999999999999997643

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=99.05  E-value=1.6e-09  Score=92.01  Aligned_cols=107  Identities=15%  Similarity=0.113  Sum_probs=86.1

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      +-++..|||+|||||.++...+.++..+|.|+|.|.-+ +.|.+....++....++++++.+.+..+      +..+.|+
T Consensus        58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~L------P~eKVDi  130 (346)
T KOG1499|consen   58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIEL------PVEKVDI  130 (346)
T ss_pred             hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEec------CccceeE
Confidence            34789999999999998888888898999999977655 8898888887776678999998866544      3589999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEE
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i  143 (248)
                      |++-+.-++ +.....++.++-.=-+.|+|||.++
T Consensus       131 IvSEWMGy~-Ll~EsMldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  131 IVSEWMGYF-LLYESMLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             EeehhhhHH-HHHhhhhhhhhhhhhhccCCCceEc
Confidence            999775554 3335567778888889999999875

>PHA03412 putative methyltransferase; Provisional

Probab=99.04  E-value=1e-09  Score=89.36  Aligned_cols=98  Identities=13%  Similarity=0.153  Sum_probs=70.7

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc----CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~----~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      .+.+|||+|||+|.++..++..    ...+++|+|+++.+++.|++...      ++.++++|+....+       +++|
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~~-------~~~F  115 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADALTTEF-------DTLF  115 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhcccc-------cCCc
Confidence            4679999999999988877653    23489999999999999997643      26789999865332       4689


Q ss_pred             eEEEeccchhhh--------cCCHHHHHHHHHHHhccccCCcE
Q 025775          107 DLVCCFQHLQMC--------FETEERARRLLQNVSSLLKPGGY  141 (248)
Q Consensus       107 D~V~~~~~l~~~--------~~~~~~~~~~l~~~~~~LkpgG~  141 (248)
                      |+|+++--.+-.        .........++..+.+++++|+.
T Consensus       116 DlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~  158 (241)
T PHA03412        116 DMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF  158 (241)
T ss_pred             cEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence            999996433210        01123356688888886666664

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.04  E-value=3.8e-09  Score=86.16  Aligned_cols=113  Identities=17%  Similarity=0.094  Sum_probs=92.8

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      +.|+++|||.|.|+|.++..++..  +.++|+..|+.++.++.|++.+...+....+.+...|+.+...       +..|
T Consensus        92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~-------~~~v  164 (256)
T COG2519          92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID-------EEDV  164 (256)
T ss_pred             CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc-------cccc
Confidence            569999999999999999888854  5579999999999999999988876655558888899876544       3489


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHH
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ  157 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~  157 (248)
                      |+|+.-         .++.-++++.+.+.|+|||.+++-.|+.+.+.+-+.
T Consensus       165 Dav~LD---------mp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~  206 (256)
T COG2519         165 DAVFLD---------LPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVE  206 (256)
T ss_pred             CEEEEc---------CCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHH
Confidence            999643         344567899999999999999999999887765554

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.04  E-value=4.3e-09  Score=84.47  Aligned_cols=120  Identities=7%  Similarity=-0.001  Sum_probs=81.5

Q ss_pred             hHHHHHHHHHhc--CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCch
Q 025775           18 EFAKTALIKIYS--HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF   95 (248)
Q Consensus        18 ~~~~~~li~~~~--~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~   95 (248)
                      +-++..+++.+.  .++.+|||+|||+|..+..++.....+++++|+++.+++.+++..+..+. .++.++++|+.+.  
T Consensus        38 d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~-~~v~~~~~D~~~~--  114 (199)
T PRK10909         38 DRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA-GNARVVNTNALSF--  114 (199)
T ss_pred             HHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEEchHHHH--
Confidence            333444444432  35789999999999988765566667999999999999999887766543 2588999997431  


Q ss_pred             hhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhc--cccCCcEEEEEecC
Q 025775           96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSS--LLKPGGYFLGITPD  148 (248)
Q Consensus        96 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~--~LkpgG~~i~~~~~  148 (248)
                         +.....+||+|++.--.+.     .....+++.+..  .|+|+|++++..+.
T Consensus       115 ---l~~~~~~fDlV~~DPPy~~-----g~~~~~l~~l~~~~~l~~~~iv~ve~~~  161 (199)
T PRK10909        115 ---LAQPGTPHNVVFVDPPFRK-----GLLEETINLLEDNGWLADEALIYVESEV  161 (199)
T ss_pred             ---HhhcCCCceEEEECCCCCC-----ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence               1112356999988654221     123344555544  48999999988554

>PLN02476 O-methyltransferase

Probab=99.00  E-value=6e-09  Score=87.37  Aligned_cols=106  Identities=8%  Similarity=-0.005  Sum_probs=83.6

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhc--ccCCce
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ--EKANQA  106 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~f  106 (248)
                      +..+|||||||+|..+..++..  ..+.++++|.+++..+.|++.++..+...+++++.+|+.+  ..+.+.  ...++|
T Consensus       118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e--~L~~l~~~~~~~~F  195 (278)
T PLN02476        118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAE--SLKSMIQNGEGSSY  195 (278)
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH--HHHHHHhcccCCCC
Confidence            5789999999999988888764  2457999999999999999999888776789999999754  111111  123689


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      |+|+.-.       ........++.+.++|+|||++++.
T Consensus       196 D~VFIDa-------~K~~Y~~y~e~~l~lL~~GGvIV~D  227 (278)
T PLN02476        196 DFAFVDA-------DKRMYQDYFELLLQLVRVGGVIVMD  227 (278)
T ss_pred             CEEEECC-------CHHHHHHHHHHHHHhcCCCcEEEEe
Confidence            9997755       2445778889999999999999987

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.00  E-value=3.8e-09  Score=85.16  Aligned_cols=106  Identities=16%  Similarity=0.147  Sum_probs=81.4

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc--cCCce
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQA  106 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~f  106 (248)
                      +..+||||||++|..+..++..  ..++++.+|+++...+.|++.+...+...+++++.+|+.+  ..+.+..  ..++|
T Consensus        45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~--~l~~l~~~~~~~~f  122 (205)
T PF01596_consen   45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALE--VLPELANDGEEGQF  122 (205)
T ss_dssp             T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHH--HHHHHHHTTTTTSE
T ss_pred             CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHh--hHHHHHhccCCCce
Confidence            5679999999999999888875  2469999999999999999988877666679999999743  2111211  13689


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      |+|+.-..-.       .....++.+.++|+|||++++.
T Consensus       123 D~VFiDa~K~-------~y~~y~~~~~~ll~~ggvii~D  154 (205)
T PF01596_consen  123 DFVFIDADKR-------NYLEYFEKALPLLRPGGVIIAD  154 (205)
T ss_dssp             EEEEEESTGG-------GHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEEccccc-------chhhHHHHHhhhccCCeEEEEc
Confidence            9998766333       3556777888999999999998

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.99  E-value=4.7e-09  Score=91.88  Aligned_cols=122  Identities=15%  Similarity=0.123  Sum_probs=93.6

Q ss_pred             HHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCC-CceEEEEEcCCCCCchhhhhcccC
Q 025775           25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK-NFIAEFFEADPCAENFETQMQEKA  103 (248)
Q Consensus        25 i~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~  103 (248)
                      +...+. |.+|||+-|=||+++...+..+.++|+++|+|..+|+.|++.+.-++. ..+..|+++|+.+  +........
T Consensus       212 l~~~~~-GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~--~l~~~~~~g  288 (393)
T COG1092         212 LGELAA-GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFK--WLRKAERRG  288 (393)
T ss_pred             Hhhhcc-CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHH--HHHHHHhcC
Confidence            344455 999999999999999999888888999999999999999998877764 2457899999855  322333345


Q ss_pred             CceeEEEecc-----chhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          104 NQADLVCCFQ-----HLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       104 ~~fD~V~~~~-----~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      .+||+|++--     .-...+.-..+...++..+.++|+|||++++.+...
T Consensus       289 ~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~  339 (393)
T COG1092         289 EKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR  339 (393)
T ss_pred             CcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence            6999998832     111113335567889999999999999999886555

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.99  E-value=2.2e-09  Score=83.61  Aligned_cols=72  Identities=24%  Similarity=0.141  Sum_probs=60.8

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      .+..|+|+|||||.++...+..+...|+|+|+++++++.+++....  ...++.|+++|+.+  +       .+++|.|+
T Consensus        45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~--~-------~~~~dtvi  113 (198)
T COG2263          45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSD--F-------RGKFDTVI  113 (198)
T ss_pred             CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhh--c-------CCccceEE
Confidence            6778999999999998888888888999999999999999988765  23469999999955  2       56789888


Q ss_pred             ecc
Q 025775          111 CFQ  113 (248)
Q Consensus       111 ~~~  113 (248)
                      ++-
T Consensus       114 mNP  116 (198)
T COG2263         114 MNP  116 (198)
T ss_pred             ECC
Confidence            764

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.99  E-value=1.8e-08  Score=80.43  Aligned_cols=113  Identities=8%  Similarity=-0.027  Sum_probs=76.7

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      ++.+|||++||+|.....+++.+.+.++++|.++.+++.+++.....+...++.++++|+..  ...........||+|+
T Consensus        49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~--~l~~~~~~~~~~dvv~  126 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALR--ALKFLAKKPTFDNVIY  126 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHH--HHHHhhccCCCceEEE
Confidence            58899999999999999998888889999999999999998877666544457899999843  1111111122478887


Q ss_pred             eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      .---...  ...+..-..+.+ ...|+++|++++..+.
T Consensus       127 ~DPPy~~--~~~~~~l~~l~~-~~~l~~~~iiv~E~~~  161 (189)
T TIGR00095       127 LDPPFFN--GALQALLELCEN-NWILEDTVLIVVEEDR  161 (189)
T ss_pred             ECcCCCC--CcHHHHHHHHHH-CCCCCCCeEEEEEecC
Confidence            6432221  112222223322 3578999999887554

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.98  E-value=9.9e-09  Score=84.76  Aligned_cols=120  Identities=17%  Similarity=0.196  Sum_probs=88.8

Q ss_pred             HhcCCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCC
Q 025775           27 IYSHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN  104 (248)
Q Consensus        27 ~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  104 (248)
                      .-+.||.+|||.|.|+|.++..+++.  +.++|+..|+.++..+.|++.++..+....+.+.+.|+....+...   .+.
T Consensus        36 l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~---~~~  112 (247)
T PF08704_consen   36 LDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE---LES  112 (247)
T ss_dssp             TT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT----TT
T ss_pred             cCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc---ccC
Confidence            34679999999999999999988865  5579999999999999999999887766679999999976554211   246


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHhccc-cCCcEEEEEecChhHHHHHHHH
Q 025775          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLL-KPGGYFLGITPDSSTIWAKYQK  158 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L-kpgG~~i~~~~~~~~~~~~~~~  158 (248)
                      .+|.|+.-.-         +.-.++..+.+.| ++||.+.+-.|+-+.+.+-...
T Consensus       113 ~~DavfLDlp---------~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~  158 (247)
T PF08704_consen  113 DFDAVFLDLP---------DPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEA  158 (247)
T ss_dssp             SEEEEEEESS---------SGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHH
T ss_pred             cccEEEEeCC---------CHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHH
Confidence            8999966442         2335677788899 8999999999998777665543

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.98  E-value=9.5e-09  Score=85.16  Aligned_cols=96  Identities=26%  Similarity=0.267  Sum_probs=78.6

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      +..+|+|||+|.|..+..++.. +..+++..|+ |.+++.+++   .    .++.++.+|+. .++       +. +|++
T Consensus       100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---~----~rv~~~~gd~f-~~~-------P~-~D~~  162 (241)
T PF00891_consen  100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE---A----DRVEFVPGDFF-DPL-------PV-ADVY  162 (241)
T ss_dssp             TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---T----TTEEEEES-TT-TCC-------SS-ESEE
T ss_pred             CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc---c----cccccccccHH-hhh-------cc-ccce
Confidence            5678999999999999988876 4448999998 888888877   2    24999999997 444       34 9999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCC--cEEEEE
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPG--GYFLGI  145 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~Lkpg--G~~i~~  145 (248)
                      ++...+|.  .+.++...+++++++.|+||  |.+++.
T Consensus       163 ~l~~vLh~--~~d~~~~~iL~~~~~al~pg~~g~llI~  198 (241)
T PF00891_consen  163 LLRHVLHD--WSDEDCVKILRNAAAALKPGKDGRLLII  198 (241)
T ss_dssp             EEESSGGG--S-HHHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred             eeehhhhh--cchHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence            99999998  78899999999999999999  999887

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.97  E-value=1.8e-08  Score=80.76  Aligned_cols=118  Identities=16%  Similarity=0.159  Sum_probs=80.8

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      ....+||||||.|.++..++.. +-..++|+|++...+..|..+....+. .++.++++|+..  +...+. +++++|.|
T Consensus        17 ~~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~--~l~~~~-~~~~v~~i   92 (195)
T PF02390_consen   17 DNPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDARE--LLRRLF-PPGSVDRI   92 (195)
T ss_dssp             CCEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTT--HHHHHS-TTTSEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHH--HHhhcc-cCCchheE
Confidence            4448999999999999999877 446999999999999999888766542 458999999865  221121 35899999


Q ss_pred             Eeccchhhhc----CCHHHHHHHHHHHhccccCCcEEEEEecChhHH
Q 025775          110 CCFQHLQMCF----ETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (248)
Q Consensus       110 ~~~~~l~~~~----~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~  152 (248)
                      ...+-=.+.-    ...--...+++.+.+.|+|||.+.+.+-+....
T Consensus        93 ~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~  139 (195)
T PF02390_consen   93 YINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYA  139 (195)
T ss_dssp             EEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHH
T ss_pred             EEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHH
Confidence            8876322100    000013679999999999999998886665433

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.96  E-value=6.7e-09  Score=87.70  Aligned_cols=107  Identities=16%  Similarity=0.178  Sum_probs=78.2

Q ss_pred             CCeEEEEcCCCCccHhHHH----Hc----C-CCeEEEEeCChHHHHHHHHHH-H-----------------hc-----C-
Q 025775           32 YVTVCDLYCGAGVDVDKWE----TA----L-IANYIGIDVATSGIGEARDTW-E-----------------NQ-----R-   78 (248)
Q Consensus        32 ~~~VLDlGcG~G~~~~~l~----~~----~-~~~v~giDis~~~l~~a~~~~-~-----------------~~-----~-   78 (248)
                      ..+||..||+||.-.-.++    ..    . .-+++|+|||+.+|+.|++-. .                 ..     + 
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            4799999999996442222    21    1 127999999999999998721 0                 00     0 


Q ss_pred             ------CCceEEEEEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775           79 ------KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus        79 ------~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                            ....+.|.+.|+.+.++.     ..+.||+|+|..++.|  .+.+....+++++.+.|+|||+|++.
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~~~-----~~~~fD~I~cRNvliy--F~~~~~~~vl~~l~~~L~pgG~L~lG  261 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQWA-----VPGPFDAIFCRNVMIY--FDKTTQERILRRFVPLLKPDGLLFAG  261 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCCCc-----cCCCcceeeHhhHHhc--CCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence                  112368888888764331     2478999999999887  46788999999999999999998775

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.96  E-value=1.5e-08  Score=91.30  Aligned_cols=115  Identities=18%  Similarity=0.161  Sum_probs=79.6

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      .++.+|||+|||+|.++..++... ..++|+|+|+.|++.|++.....+. .++.++++|+.+..  ......+++||+|
T Consensus       296 ~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~-~~v~~~~~d~~~~l--~~~~~~~~~fD~V  371 (443)
T PRK13168        296 QPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGL-DNVTFYHANLEEDF--TDQPWALGGFDKV  371 (443)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEeChHHhh--hhhhhhcCCCCEE
Confidence            467899999999999988887665 5999999999999999988765543 24899999985421  0000024579999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHH
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ  157 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~  157 (248)
                      ++.---.    .   ....++.+.+ ++|++++++++ |...+.+.+.
T Consensus       372 i~dPPr~----g---~~~~~~~l~~-~~~~~ivyvSC-np~tlaRDl~  410 (443)
T PRK13168        372 LLDPPRA----G---AAEVMQALAK-LGPKRIVYVSC-NPATLARDAG  410 (443)
T ss_pred             EECcCCc----C---hHHHHHHHHh-cCCCeEEEEEe-ChHHhhccHH
Confidence            8754211    1   2344555554 68999888876 5555554444

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.96  E-value=1.2e-08  Score=85.05  Aligned_cols=124  Identities=20%  Similarity=0.253  Sum_probs=85.6

Q ss_pred             hhhHhHHHHHHHHHhcCCCCeEEEEcCCCCccHhHHH----HcC------CCeEEEEeCChHHHHHHHHH-HH------h
Q 025775           14 HRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWE----TAL------IANYIGIDVATSGIGEARDT-WE------N   76 (248)
Q Consensus        14 ~~~~~~~~~~li~~~~~~~~~VLDlGcG~G~~~~~l~----~~~------~~~v~giDis~~~l~~a~~~-~~------~   76 (248)
                      ..+.+.+...|+..-.....+||-+||+||.-.--++    ...      .-+++|+|||..+|+.|+.- +.      +
T Consensus        79 ~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~  158 (268)
T COG1352          79 EELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRG  158 (268)
T ss_pred             HHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhcc
Confidence            3344444433333222246799999999996442222    211      23899999999999999761 11      0


Q ss_pred             ------------c--C-------CCceEEEEEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhcc
Q 025775           77 ------------Q--R-------KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSL  135 (248)
Q Consensus        77 ------------~--~-------~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~  135 (248)
                                  .  +       ....+.|.+.|+...++      ..+.||+|+|-.++.|  .+.+...+++..++..
T Consensus       159 ~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~------~~~~fD~IfCRNVLIY--Fd~~~q~~il~~f~~~  230 (268)
T COG1352         159 LPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP------FLGKFDLIFCRNVLIY--FDEETQERILRRFADS  230 (268)
T ss_pred             CCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc------ccCCCCEEEEcceEEe--eCHHHHHHHHHHHHHH
Confidence                        0  0       01226788888877663      2578999999999998  5688899999999999


Q ss_pred             ccCCcEEEEE
Q 025775          136 LKPGGYFLGI  145 (248)
Q Consensus       136 LkpgG~~i~~  145 (248)
                      |+|||++++.
T Consensus       231 L~~gG~LflG  240 (268)
T COG1352         231 LKPGGLLFLG  240 (268)
T ss_pred             hCCCCEEEEc
Confidence            9999999875

>PRK03612 spermidine synthase; Provisional

Probab=98.95  E-value=4.8e-09  Score=96.13  Aligned_cols=112  Identities=12%  Similarity=0.034  Sum_probs=79.8

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCC-CeEEEEeCChHHHHHHHH--HHHhcC----CCceEEEEEcCCCCCchhhhhccc
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARD--TWENQR----KNFIAEFFEADPCAENFETQMQEK  102 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~-~~v~giDis~~~l~~a~~--~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~  102 (248)
                      +++.+|||||||+|..+..+.+.+. .+++++|+++++++.+++  .+...+    ...+++++.+|..+  +   +...
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~--~---l~~~  370 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFN--W---LRKL  370 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHH--H---HHhC
Confidence            4567999999999998888877654 799999999999999998  332211    11358889998743  1   1123


Q ss_pred             CCceeEEEeccchhhhcC-CHHHHHHHHHHHhccccCCcEEEEEe
Q 025775          103 ANQADLVCCFQHLQMCFE-TEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       103 ~~~fD~V~~~~~l~~~~~-~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      +++||+|++...-..... ..-...++++.+.+.|+|||.+++..
T Consensus       371 ~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~  415 (521)
T PRK03612        371 AEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS  415 (521)
T ss_pred             CCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence            568999998753322000 01113578999999999999999874

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.94  E-value=4.4e-09  Score=84.73  Aligned_cols=115  Identities=19%  Similarity=0.237  Sum_probs=75.7

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcC-CCceEE--EEE-------------------
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR-KNFIAE--FFE-------------------   87 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~-~~~~~~--~~~-------------------   87 (248)
                      .+..+|||||-+|..+..++.. +...+.|+||++..|..|++..+--. ....+.  +..                   
T Consensus        58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~  137 (288)
T KOG2899|consen   58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF  137 (288)
T ss_pred             CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence            5678999999999999888776 66789999999999999998543200 000000  000                   


Q ss_pred             -cCCCC-Cch---------hhhhcccCCceeEEEeccchhhhc--CCHHHHHHHHHHHhccccCCcEEEEE
Q 025775           88 -ADPCA-ENF---------ETQMQEKANQADLVCCFQHLQMCF--ETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus        88 -~d~~~-~~~---------~~~~~~~~~~fD~V~~~~~l~~~~--~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                       .|..+ ..+         .+.+......||+|.|....-|+.  .+.+-+..+++.+.++|.|||+|++-
T Consensus       138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE  208 (288)
T KOG2899|consen  138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE  208 (288)
T ss_pred             cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence             00000 000         000111457899999976543332  24566899999999999999999986

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.89  E-value=1.3e-08  Score=86.87  Aligned_cols=119  Identities=20%  Similarity=0.193  Sum_probs=86.6

Q ss_pred             HHHHHHHh-cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEc-CCCCCchhhh
Q 025775           21 KTALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEA-DPCAENFETQ   98 (248)
Q Consensus        21 ~~~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~   98 (248)
                      .+.+.+.. +.+|..|||--||||+.+....-.+. +++|+|++..|++-|+..++.-+. .+..+... |+...++   
T Consensus       186 AR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i-~~~~~~~~~Da~~lpl---  260 (347)
T COG1041         186 ARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGI-EDYPVLKVLDATNLPL---  260 (347)
T ss_pred             HHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCc-CceeEEEecccccCCC---
Confidence            33444443 45889999999999998877755566 999999999999999987766442 12334444 9988886   


Q ss_pred             hcccCCceeEEEeccchhhh----cCC-HHHHHHHHHHHhccccCCcEEEEEec
Q 025775           99 MQEKANQADLVCCFQHLQMC----FET-EERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus        99 ~~~~~~~fD~V~~~~~l~~~----~~~-~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                         ...++|.|.+-.-..-.    -.. .+-..++++.+.++|++||++++..|
T Consensus       261 ---~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p  311 (347)
T COG1041         261 ---RDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP  311 (347)
T ss_pred             ---CCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence               35579999884311100    011 34478899999999999999999988

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.88  E-value=2.6e-08  Score=89.29  Aligned_cols=103  Identities=14%  Similarity=0.095  Sum_probs=75.8

Q ss_pred             CCeEEEEcCCCCccHhHHHHcC-----CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           32 YVTVCDLYCGAGVDVDKWETAL-----IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        32 ~~~VLDlGcG~G~~~~~l~~~~-----~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      +..|||+|||+|-++...+++.     ..+|++++-|+.++...+.+...++...+++++++|+.+...       +.+.
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l-------pekv  259 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL-------PEKV  259 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH-------SS-E
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC-------CCce
Confidence            5789999999998876665543     459999999999998887776666666779999999988765       5699


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEE
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i  143 (248)
                      |+|++-..-  .|..-+...+.+....+.|||||+++
T Consensus       260 DIIVSElLG--sfg~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  260 DIIVSELLG--SFGDNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             EEEEE---B--TTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             eEEEEeccC--CccccccCHHHHHHHHhhcCCCCEEe
Confidence            999985422  12333356678899999999999875

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.88  E-value=3.1e-08  Score=80.05  Aligned_cols=104  Identities=15%  Similarity=0.106  Sum_probs=83.4

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc-C-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEE-cCCCCCchhhhhcccCCcee
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFE-ADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~-~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~fD  107 (248)
                      +..+|||||.+.|..+..++.. + .++++.+|+++++.+.|++.++..+...++..+. +|..+. + +.  ...++||
T Consensus        59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~-l-~~--~~~~~fD  134 (219)
T COG4122          59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV-L-SR--LLDGSFD  134 (219)
T ss_pred             CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH-H-Hh--ccCCCcc
Confidence            6789999999999988887765 3 4689999999999999999998887767788887 465321 1 11  1468999


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +|+...       ...+...+++.+.++|+|||++++.
T Consensus       135 liFIDa-------dK~~yp~~le~~~~lLr~GGliv~D  165 (219)
T COG4122         135 LVFIDA-------DKADYPEYLERALPLLRPGGLIVAD  165 (219)
T ss_pred             EEEEeC-------ChhhCHHHHHHHHHHhCCCcEEEEe
Confidence            998765       3445788999999999999999987

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=98.88  E-value=8e-09  Score=88.99  Aligned_cols=111  Identities=18%  Similarity=0.186  Sum_probs=74.9

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      ++.+|||+|||+|..+..++..+ .+|+|+|+|+.+++.|++.....+. .+++|+++|+.+...  .   ..+.||+|+
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~--~---~~~~~D~Vv  245 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFAT--A---QGEVPDLVL  245 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHH--h---cCCCCeEEE
Confidence            56899999999999998888765 5999999999999999988876654 358999999844221  1   235799998


Q ss_pred             eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHH
Q 025775          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~  156 (248)
                      +.---..      ....+++.+ ..++|++++++++ +...+.+.+
T Consensus       246 ~dPPr~G------~~~~~~~~l-~~~~~~~ivyvsc-~p~t~~rd~  283 (315)
T PRK03522        246 VNPPRRG------IGKELCDYL-SQMAPRFILYSSC-NAQTMAKDL  283 (315)
T ss_pred             ECCCCCC------ccHHHHHHH-HHcCCCeEEEEEC-CcccchhHH
Confidence            7632110      012223323 3367887777663 333343333

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.86  E-value=9.4e-08  Score=79.48  Aligned_cols=112  Identities=19%  Similarity=0.208  Sum_probs=89.3

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc-C--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA-L--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~-~--~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      ...+||||+||.|..+...... +  ...+.-.|.|+..++.+++..+..+...-+.|.++|+++..-   +.......+
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~---l~~l~p~P~  211 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDS---LAALDPAPT  211 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhH---hhccCCCCC
Confidence            5679999999999988776654 2  358999999999999999999888776667999999987432   111245678


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      +++++.... .|.+-+.....++-+.+.+.|||++|.|.
T Consensus       212 l~iVsGL~E-lF~Dn~lv~~sl~gl~~al~pgG~lIyTg  249 (311)
T PF12147_consen  212 LAIVSGLYE-LFPDNDLVRRSLAGLARALEPGGYLIYTG  249 (311)
T ss_pred             EEEEecchh-hCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence            888776444 57766778889999999999999999994

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.86  E-value=3.6e-08  Score=78.17  Aligned_cols=113  Identities=14%  Similarity=0.115  Sum_probs=78.3

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      ++.+|||+-||+|......++++.+.|+.+|.++.++...++..+..+...++..+..|+..  ..........+||+|+
T Consensus        42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~--~l~~~~~~~~~fDiIf  119 (183)
T PF03602_consen   42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFK--FLLKLAKKGEKFDIIF  119 (183)
T ss_dssp             TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHH--HHHHHHHCTS-EEEEE
T ss_pred             CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHH--HHHhhcccCCCceEEE
Confidence            68999999999999999888999999999999999999999888776655568888888633  1111211367899997


Q ss_pred             eccchhhhcCCHHHHHHHHHHHh--ccccCCcEEEEEecCh
Q 025775          111 CFQHLQMCFETEERARRLLQNVS--SLLKPGGYFLGITPDS  149 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~~~--~~LkpgG~~i~~~~~~  149 (248)
                      +.--...  . . ....+++.+.  ..|+++|++++-....
T Consensus       120 lDPPY~~--~-~-~~~~~l~~l~~~~~l~~~~~ii~E~~~~  156 (183)
T PF03602_consen  120 LDPPYAK--G-L-YYEELLELLAENNLLNEDGLIIIEHSKK  156 (183)
T ss_dssp             E--STTS--C-H-HHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred             ECCCccc--c-h-HHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence            7532221  1 1 1356666665  8899999999876554

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.85  E-value=5.2e-08  Score=77.08  Aligned_cols=131  Identities=19%  Similarity=0.231  Sum_probs=82.8

Q ss_pred             cccchhhhhHhHHHHHHHHHh-cCCCCeEEEEcCCCCccHhHHHHc--CCC--------eEEEEeCChHHHHHHHHHHHh
Q 025775            8 RSELTHHRLYEFAKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETA--LIA--------NYIGIDVATSGIGEARDTWEN   76 (248)
Q Consensus         8 r~~~~~~~~~~~~~~~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~--~~~--------~v~giDis~~~l~~a~~~~~~   76 (248)
                      |+....-.++..+...|+... ..++..|||..||+|..+...+..  ...        .+.|.|+++.+++.|+.....
T Consensus         4 R~~~~~a~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~   83 (179)
T PF01170_consen    4 RPFFGPAPLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKA   83 (179)
T ss_dssp             TTSSSSTSS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHh
Confidence            443333445555555555544 347889999999999988655433  232        388999999999999998887


Q ss_pred             cCCCceEEEEEcCCCCCchhhhhcccCCceeEEEeccchhhhcCC----HHHHHHHHHHHhccccCCcEEEEE
Q 025775           77 QRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFET----EERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus        77 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~----~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      .+....+.+.+.|+.+.++      .++++|+|++..-...-...    .+-...+++++.++|++ ..++++
T Consensus        84 ag~~~~i~~~~~D~~~l~~------~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~  149 (179)
T PF01170_consen   84 AGVEDYIDFIQWDARELPL------PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLT  149 (179)
T ss_dssp             TT-CGGEEEEE--GGGGGG------TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEE
T ss_pred             cccCCceEEEecchhhccc------ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEE
Confidence            6666668999999977663      46799999996422211121    22346778899999999 333333

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.84  E-value=1.8e-08  Score=79.28  Aligned_cols=113  Identities=19%  Similarity=0.042  Sum_probs=71.6

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcC--CCceEEEEEcCCCCCchhhhhcccCCc
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR--KNFIAEFFEADPCAENFETQMQEKANQ  105 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (248)
                      ..++.+|||||||+|.....++.. +..+|+.+|.++ .++..+...+.++  ...++.+...|-.+.......  ...+
T Consensus        43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~--~~~~  119 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL--EPHS  119 (173)
T ss_dssp             GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHH--S-SS
T ss_pred             hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccc--cccc
Confidence            347889999999999777777666 567999999999 8888877766543  234567777776543211122  3468


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      ||+|++.-++..    .+....++..+.++|+++|.+++..+.
T Consensus       120 ~D~IlasDv~Y~----~~~~~~L~~tl~~ll~~~~~vl~~~~~  158 (173)
T PF10294_consen  120 FDVILASDVLYD----EELFEPLVRTLKRLLKPNGKVLLAYKR  158 (173)
T ss_dssp             BSEEEEES--S-----GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred             CCEEEEecccch----HHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence            999999987664    466788999999999999987777543

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.84  E-value=2.1e-07  Score=79.79  Aligned_cols=114  Identities=12%  Similarity=0.039  Sum_probs=78.3

Q ss_pred             hcCCCCeEEEEcCCCCccHhHHHHc-----CCCeEEEEeCChHHHHHHHHHHH-hcCCCceEEEEEcCCCCCchhhhhcc
Q 025775           28 YSHPYVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWE-NQRKNFIAEFFEADPCAENFETQMQE  101 (248)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~l~~~-----~~~~v~giDis~~~l~~a~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~  101 (248)
                      .++++..|+|+|||.|.-+..++..     ....++++|+|.++|+.+.++.. ..-....+.-+++|..+.--  .++.
T Consensus        73 ~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~--~l~~  150 (319)
T TIGR03439        73 SIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLA--WLKR  150 (319)
T ss_pred             hcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHh--hccc
Confidence            3456779999999999876655443     23479999999999999998887 32222345557887644210  1111


Q ss_pred             --cCCceeEEEecc-chhhhcCCHHHHHHHHHHHhc-cccCCcEEEEE
Q 025775          102 --KANQADLVCCFQ-HLQMCFETEERARRLLQNVSS-LLKPGGYFLGI  145 (248)
Q Consensus       102 --~~~~fD~V~~~~-~l~~~~~~~~~~~~~l~~~~~-~LkpgG~~i~~  145 (248)
                        ......+++... ++.+  .+.+....+++++++ .|+|||.|++.
T Consensus       151 ~~~~~~~r~~~flGSsiGN--f~~~ea~~fL~~~~~~~l~~~d~lLiG  196 (319)
T TIGR03439       151 PENRSRPTTILWLGSSIGN--FSRPEAAAFLAGFLATALSPSDSFLIG  196 (319)
T ss_pred             ccccCCccEEEEeCccccC--CCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence              123456666654 5555  457778999999999 99999998886

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.83  E-value=4.9e-08  Score=80.83  Aligned_cols=106  Identities=12%  Similarity=0.042  Sum_probs=82.4

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc---cCCc
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE---KANQ  105 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~  105 (248)
                      +..+|||||+++|..+..++..  .-++++.+|++++..+.|++.+...+...+++++++|+.+  ..+.+..   ..++
T Consensus        79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e--~L~~l~~~~~~~~~  156 (247)
T PLN02589         79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP--VLDQMIEDGKYHGT  156 (247)
T ss_pred             CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHH--HHHHHHhccccCCc
Confidence            5678999999999988877764  2458999999999999999999887777789999998744  1111111   1368


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      ||+|+.-..       .......++.+.++|+|||++++.
T Consensus       157 fD~iFiDad-------K~~Y~~y~~~~l~ll~~GGviv~D  189 (247)
T PLN02589        157 FDFIFVDAD-------KDNYINYHKRLIDLVKVGGVIGYD  189 (247)
T ss_pred             ccEEEecCC-------HHHhHHHHHHHHHhcCCCeEEEEc
Confidence            999987652       344667788888999999999876

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.82  E-value=4.8e-08  Score=82.37  Aligned_cols=115  Identities=19%  Similarity=0.215  Sum_probs=81.8

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCC-ceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      ++.+|||+-|=||+++...+..+..+|+++|.|..+++.|++.+.-++.. .++.|++.|+.+  +...+. ..++||+|
T Consensus       123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~--~l~~~~-~~~~fD~I  199 (286)
T PF10672_consen  123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFK--FLKRLK-KGGRFDLI  199 (286)
T ss_dssp             TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHH--HHHHHH-HTT-EEEE
T ss_pred             CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHH--HHHHHh-cCCCCCEE
Confidence            58899999999999999888888889999999999999999988766543 468999999854  221222 35699999


Q ss_pred             Eec---cchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          110 CCF---QHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       110 ~~~---~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      ++-   ++-. -+.-..+...++..+.++|+|||.+++++.+.
T Consensus       200 IlDPPsF~k~-~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~  241 (286)
T PF10672_consen  200 ILDPPSFAKS-KFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH  241 (286)
T ss_dssp             EE--SSEESS-TCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred             EECCCCCCCC-HHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence            983   2111 12224467789999999999999988764443

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PLN02672 methionine S-methyltransferase

Probab=98.81  E-value=3.2e-08  Score=96.24  Aligned_cols=111  Identities=18%  Similarity=0.091  Sum_probs=79.1

Q ss_pred             CCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcC---------------CCceEEEEEcCCCCCch
Q 025775           32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR---------------KNFIAEFFEADPCAENF   95 (248)
Q Consensus        32 ~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~---------------~~~~~~~~~~d~~~~~~   95 (248)
                      +.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+.....++               ...++.++++|+.+...
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~  198 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR  198 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence            468999999999999888776 34699999999999999988775432               11358999999865321


Q ss_pred             hhhhcccCCceeEEEeccch---------------h------h------h-------cCCHHHHHHHHHHHhccccCCcE
Q 025775           96 ETQMQEKANQADLVCCFQHL---------------Q------M------C-------FETEERARRLLQNVSSLLKPGGY  141 (248)
Q Consensus        96 ~~~~~~~~~~fD~V~~~~~l---------------~------~------~-------~~~~~~~~~~l~~~~~~LkpgG~  141 (248)
                           ....+||+|+++--.               |      |      .       -...+-...++.++.++|+|||.
T Consensus       199 -----~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~  273 (1082)
T PLN02672        199 -----DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGI  273 (1082)
T ss_pred             -----ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCE
Confidence                 012369999884210               0      0      0       01123347889999999999999


Q ss_pred             EEEEec
Q 025775          142 FLGITP  147 (248)
Q Consensus       142 ~i~~~~  147 (248)
                      +++-+-
T Consensus       274 l~lEiG  279 (1082)
T PLN02672        274 MIFNMG  279 (1082)
T ss_pred             EEEEEC
Confidence            998744

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.78  E-value=5.7e-08  Score=79.35  Aligned_cols=118  Identities=14%  Similarity=0.103  Sum_probs=87.4

Q ss_pred             CeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEe
Q 025775           33 VTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (248)
Q Consensus        33 ~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~  111 (248)
                      ..+||||||.|.++..++... -..++|+++....+..|.++....+.. ++.+++.|+..  +...+. ++++.|-|..
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~--~l~~~~-~~~sl~~I~i  125 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVE--VLDYLI-PDGSLDKIYI  125 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHH--HHHhcC-CCCCeeEEEE
Confidence            489999999999999998874 458999999999999999988876642 58889999844  322221 3569999988


Q ss_pred             ccchhhh-c---CCHHHHHHHHHHHhccccCCcEEEEEecChhHHHH
Q 025775          112 FQHLQMC-F---ETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA  154 (248)
Q Consensus       112 ~~~l~~~-~---~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~  154 (248)
                      .|.=.|- .   ...--...+++.+.+.|+|||.+.+.+-+......
T Consensus       126 ~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~  172 (227)
T COG0220         126 NFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEW  172 (227)
T ss_pred             ECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHH
Confidence            7632210 0   01112368999999999999999998777654444

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.77  E-value=3.5e-08  Score=83.95  Aligned_cols=84  Identities=18%  Similarity=0.193  Sum_probs=63.8

Q ss_pred             HHHHHHHh-cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhh
Q 025775           21 KTALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM   99 (248)
Q Consensus        21 ~~~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   99 (248)
                      ...+++.. ..++.+|||||||+|.++..++... .+++|+|+++.+++.+++++...+...+++++++|+...++    
T Consensus        25 ~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~----   99 (294)
T PTZ00338         25 LDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF----   99 (294)
T ss_pred             HHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc----
Confidence            33444433 4578899999999999998887765 48999999999999999888654323458999999866443    


Q ss_pred             cccCCceeEEEecc
Q 025775          100 QEKANQADLVCCFQ  113 (248)
Q Consensus       100 ~~~~~~fD~V~~~~  113 (248)
                          ..||.|+++.
T Consensus       100 ----~~~d~VvaNl  109 (294)
T PTZ00338        100 ----PYFDVCVANV  109 (294)
T ss_pred             ----cccCEEEecC
Confidence                3689887754

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.77  E-value=9.2e-08  Score=73.03  Aligned_cols=108  Identities=17%  Similarity=0.105  Sum_probs=85.3

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcC--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc-cCCcee
Q 025775           31 PYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQAD  107 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~--~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~fD  107 (248)
                      .+..|||+|.|||.++.++++.+  ...+++++.|++......+++++      +.++.+|+.+..-  .+.+ ++..||
T Consensus        48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~------~~ii~gda~~l~~--~l~e~~gq~~D  119 (194)
T COG3963          48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPG------VNIINGDAFDLRT--TLGEHKGQFFD  119 (194)
T ss_pred             cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCC------ccccccchhhHHH--HHhhcCCCeee
Confidence            57799999999999999998874  45899999999999999988876      5589999866441  1111 456799


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      .|+|..-+-.  -+.....++++.+...|.+||.++-.+..
T Consensus       120 ~viS~lPll~--~P~~~~iaile~~~~rl~~gg~lvqftYg  158 (194)
T COG3963         120 SVISGLPLLN--FPMHRRIAILESLLYRLPAGGPLVQFTYG  158 (194)
T ss_pred             eEEecccccc--CcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence            9998665443  45677889999999999999998866433

>PRK04148 hypothetical protein; Provisional

Probab=98.77  E-value=1.3e-07  Score=70.57  Aligned_cols=96  Identities=14%  Similarity=0.133  Sum_probs=68.5

Q ss_pred             CCCeEEEEcCCCCc-cHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           31 PYVTVCDLYCGAGV-DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        31 ~~~~VLDlGcG~G~-~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      ++.+|||+|||+|. .+..++..+. +|+++|+++.+++.++...        +.+++.|+++.++.     .-..+|+|
T Consensus        16 ~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~--------~~~v~dDlf~p~~~-----~y~~a~li   81 (134)
T PRK04148         16 KNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLG--------LNAFVDDLFNPNLE-----IYKNAKLI   81 (134)
T ss_pred             cCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhC--------CeEEECcCCCCCHH-----HHhcCCEE
Confidence            56789999999996 6667776666 9999999999998886652        67899999887763     23578999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      .+..       +..+++..+-++.+.+  |.-+++....+
T Consensus        82 ysir-------pp~el~~~~~~la~~~--~~~~~i~~l~~  112 (134)
T PRK04148         82 YSIR-------PPRDLQPFILELAKKI--NVPLIIKPLSG  112 (134)
T ss_pred             EEeC-------CCHHHHHHHHHHHHHc--CCCEEEEcCCC
Confidence            7654       3444555555555543  44566654443

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.76  E-value=5.1e-08  Score=80.01  Aligned_cols=95  Identities=18%  Similarity=0.241  Sum_probs=70.2

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      ...++||||.|.|..+..++. .+.+|+++++|+.|...-+    ..+    .  .+.|..+  .    .+.+.+||+|+
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~-~f~~v~aTE~S~~Mr~rL~----~kg----~--~vl~~~~--w----~~~~~~fDvIs  156 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAP-LFKEVYATEASPPMRWRLS----KKG----F--TVLDIDD--W----QQTDFKFDVIS  156 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHh-hcceEEeecCCHHHHHHHH----hCC----C--eEEehhh--h----hccCCceEEEe
Confidence            346799999999999988855 4568999999999965443    333    2  2223322  1    11356899999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      |...+--    -.+...+++.+++.|+|+|++++.+
T Consensus       157 cLNvLDR----c~~P~~LL~~i~~~l~p~G~lilAv  188 (265)
T PF05219_consen  157 CLNVLDR----CDRPLTLLRDIRRALKPNGRLILAV  188 (265)
T ss_pred             ehhhhhc----cCCHHHHHHHHHHHhCCCCEEEEEE
Confidence            9996654    3347789999999999999999883

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.75  E-value=4.2e-08  Score=80.24  Aligned_cols=96  Identities=14%  Similarity=0.024  Sum_probs=62.6

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceE-EEEEcCCCCCchhhhhcccCCceeEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIA-EFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      ++.+|||+|||||.++..++..+..+|+|+|+++.|+.....   ...   ++ .+...|+.......... .-..+|++
T Consensus        75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~---~~~---~v~~~~~~ni~~~~~~~~~~-d~~~~Dvs  147 (228)
T TIGR00478        75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLR---QDE---RVKVLERTNIRYVTPADIFP-DFATFDVS  147 (228)
T ss_pred             CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHh---cCC---CeeEeecCCcccCCHhHcCC-CceeeeEE
Confidence            678999999999999999988878899999999998876221   111   12 23444554322211110 11367766


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      +++..            .++..+.+.|+| |.+++.+
T Consensus       148 fiS~~------------~~l~~i~~~l~~-~~~~~L~  171 (228)
T TIGR00478       148 FISLI------------SILPELDLLLNP-NDLTLLF  171 (228)
T ss_pred             EeehH------------hHHHHHHHHhCc-CeEEEEc
Confidence            55331            247788889999 8777653

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.75  E-value=7.7e-08  Score=86.45  Aligned_cols=115  Identities=17%  Similarity=0.165  Sum_probs=77.3

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      .++.+|||+|||+|..+..++... .+|+|+|+++.|++.|++.....+. .++.++++|+.+.  .........+||+|
T Consensus       291 ~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~d~~~~--l~~~~~~~~~~D~v  366 (431)
T TIGR00479       291 QGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGI-ANVEFLAGTLETV--LPKQPWAGQIPDVL  366 (431)
T ss_pred             CCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEeCCHHHH--HHHHHhcCCCCCEE
Confidence            466899999999999998887654 5899999999999999988766543 3589999998431  11111124579999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHH
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~  156 (248)
                      ++.-.-..      ....+++.+.+ ++|++++++++ +...+.+.+
T Consensus       367 i~dPPr~G------~~~~~l~~l~~-l~~~~ivyvsc-~p~tlard~  405 (431)
T TIGR00479       367 LLDPPRKG------CAAEVLRTIIE-LKPERIVYVSC-NPATLARDL  405 (431)
T ss_pred             EECcCCCC------CCHHHHHHHHh-cCCCEEEEEcC-CHHHHHHHH
Confidence            76432110      02344555443 78988777763 444554444

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.75  E-value=5.6e-07  Score=77.24  Aligned_cols=85  Identities=16%  Similarity=0.124  Sum_probs=59.4

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhc-CCCceEEEEE-cCCCCCchhhhhcccCCcee
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ-RKNFIAEFFE-ADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~-~~~~~~~~~~-~d~~~~~~~~~~~~~~~~fD  107 (248)
                      ++.+|||||||+|.....++.. ...+++|+|+++.+++.|+.....+ +...++.+.+ .|...  +...+....+.||
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~--i~~~i~~~~~~fD  191 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKA--IFKGIIHKNERFD  191 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhh--hhhcccccCCceE
Confidence            4679999999999776666554 3348999999999999999988877 4555676654 33221  1111111356899


Q ss_pred             EEEeccchhh
Q 025775          108 LVCCFQHLQM  117 (248)
Q Consensus       108 ~V~~~~~l~~  117 (248)
                      +|+|+--+|-
T Consensus       192 livcNPPf~~  201 (321)
T PRK11727        192 ATLCNPPFHA  201 (321)
T ss_pred             EEEeCCCCcC
Confidence            9999876553

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.74  E-value=4.4e-08  Score=82.65  Aligned_cols=82  Identities=11%  Similarity=0.048  Sum_probs=61.5

Q ss_pred             HHHHHHHh-cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhh
Q 025775           21 KTALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM   99 (248)
Q Consensus        21 ~~~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   99 (248)
                      ...+++.. ..++.+|||+|||+|..+..++.... +++|+|+++.|++.++++...    .++.++++|+.+.++.   
T Consensus        31 ~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~---  102 (272)
T PRK00274         31 LDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLS---  102 (272)
T ss_pred             HHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHH---
Confidence            33444443 35788999999999999999988765 899999999999999887643    2489999999776542   


Q ss_pred             cccCCceeEEEecc
Q 025775          100 QEKANQADLVCCFQ  113 (248)
Q Consensus       100 ~~~~~~fD~V~~~~  113 (248)
                         +...|.|+++.
T Consensus       103 ---~~~~~~vv~Nl  113 (272)
T PRK00274        103 ---ELQPLKVVANL  113 (272)
T ss_pred             ---HcCcceEEEeC
Confidence               11147776654

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.73  E-value=5.3e-08  Score=77.42  Aligned_cols=87  Identities=14%  Similarity=0.191  Sum_probs=55.0

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      +++..|.|+|||.+.++..+. ... .|...|+-+.           +     -....+|+...++      .+++.|++
T Consensus        71 ~~~~viaD~GCGdA~la~~~~-~~~-~V~SfDLva~-----------n-----~~Vtacdia~vPL------~~~svDv~  126 (219)
T PF05148_consen   71 PKSLVIADFGCGDAKLAKAVP-NKH-KVHSFDLVAP-----------N-----PRVTACDIANVPL------EDESVDVA  126 (219)
T ss_dssp             -TTS-EEEES-TT-HHHHH---S----EEEEESS-S-----------S-----TTEEES-TTS-S--------TT-EEEE
T ss_pred             CCCEEEEECCCchHHHHHhcc-cCc-eEEEeeccCC-----------C-----CCEEEecCccCcC------CCCceeEE
Confidence            356799999999998764442 223 6999998542           1     2368899988888      57899999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      ++-.++..     .+...++.+..|+|||||.+.+.
T Consensus       127 VfcLSLMG-----Tn~~~fi~EA~RvLK~~G~L~IA  157 (219)
T PF05148_consen  127 VFCLSLMG-----TNWPDFIREANRVLKPGGILKIA  157 (219)
T ss_dssp             EEES---S-----S-HHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEhhhhC-----CCcHHHHHHHHheeccCcEEEEE
Confidence            87666553     13678999999999999999998

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.72  E-value=1.7e-07  Score=82.65  Aligned_cols=112  Identities=16%  Similarity=0.165  Sum_probs=77.6

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      ++.+|||++||+|.++..++... .+++|+|+++.+++.|++.....+. .++.|+++|+.+...  .   ...+||+|+
T Consensus       233 ~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~-~~~~~~~~d~~~~~~--~---~~~~~D~vi  305 (374)
T TIGR02085       233 PVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGL-DNLSFAALDSAKFAT--A---QMSAPELVL  305 (374)
T ss_pred             CCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHH--h---cCCCCCEEE
Confidence            56799999999999988887655 5899999999999999988766553 258899999843211  1   124699997


Q ss_pred             eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHH
Q 025775          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ  157 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~  157 (248)
                      +.---.      .....+++.+. .++|++++++.+ +...+.+.+.
T Consensus       306 ~DPPr~------G~~~~~l~~l~-~~~p~~ivyvsc-~p~TlaRDl~  344 (374)
T TIGR02085       306 VNPPRR------GIGKELCDYLS-QMAPKFILYSSC-NAQTMAKDIA  344 (374)
T ss_pred             ECCCCC------CCcHHHHHHHH-hcCCCeEEEEEe-CHHHHHHHHH
Confidence            754211      11233444443 378998888774 5555555554

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.70  E-value=3.1e-08  Score=73.77  Aligned_cols=75  Identities=15%  Similarity=0.152  Sum_probs=60.4

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      .|.+++|||||+|.+.......+...++|+||++++++.+.+..+...  .++.++++|+.++.+      ..+.||.++
T Consensus        48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfE--vqidlLqcdildle~------~~g~fDtav  119 (185)
T KOG3420|consen   48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFE--VQIDLLQCDILDLEL------KGGIFDTAV  119 (185)
T ss_pred             cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhh--hhhheeeeeccchhc------cCCeEeeEE
Confidence            689999999999987756655567789999999999999988766533  236889999977665      468899998


Q ss_pred             ecc
Q 025775          111 CFQ  113 (248)
Q Consensus       111 ~~~  113 (248)
                      ++.
T Consensus       120 iNp  122 (185)
T KOG3420|consen  120 INP  122 (185)
T ss_pred             ecC
Confidence            865

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.70  E-value=1.6e-07  Score=79.20  Aligned_cols=105  Identities=13%  Similarity=0.076  Sum_probs=84.1

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      .+..|||+|||.|.++...+..+.++|.+++. .+|.+.|++....++...++..+.+-+.+..+       +++.|+|+
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieL-------PEk~DviI  248 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEA-SEMAQYARKLVASNNLADRITVIPGKIEDIEL-------PEKVDVII  248 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHHhCcceEEEEeh-hHHHHHHHHHHhcCCccceEEEccCccccccC-------chhccEEE
Confidence            67899999999998877777789999999995 56889999998888777788888888866555       67899998


Q ss_pred             eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +-- +.+++.++..++..+. .++.|+|.|.++=+
T Consensus       249 SEP-MG~mL~NERMLEsYl~-Ark~l~P~GkMfPT  281 (517)
T KOG1500|consen  249 SEP-MGYMLVNERMLESYLH-ARKWLKPNGKMFPT  281 (517)
T ss_pred             ecc-chhhhhhHHHHHHHHH-HHhhcCCCCcccCc
Confidence            754 3445566666766665 45999999988755

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.70  E-value=1.1e-07  Score=79.72  Aligned_cols=83  Identities=13%  Similarity=0.038  Sum_probs=63.5

Q ss_pred             HHHHHHHh-cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhh
Q 025775           21 KTALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM   99 (248)
Q Consensus        21 ~~~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   99 (248)
                      ...+++.. ..++.+|||||||+|..+..++... .+++|+|+++.+++.++++....   .++.++++|+.+.++    
T Consensus        18 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~~---~~v~ii~~D~~~~~~----   89 (258)
T PRK14896         18 VDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIAA---GNVEIIEGDALKVDL----   89 (258)
T ss_pred             HHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhccC---CCEEEEEeccccCCc----
Confidence            33444443 4578899999999999999998874 48999999999999999877542   248999999976543    


Q ss_pred             cccCCceeEEEeccch
Q 025775          100 QEKANQADLVCCFQHL  115 (248)
Q Consensus       100 ~~~~~~fD~V~~~~~l  115 (248)
                          ..||.|+++.-.
T Consensus        90 ----~~~d~Vv~NlPy  101 (258)
T PRK14896         90 ----PEFNKVVSNLPY  101 (258)
T ss_pred             ----hhceEEEEcCCc
Confidence                247999886543

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.68  E-value=4.2e-07  Score=75.93  Aligned_cols=86  Identities=10%  Similarity=-0.036  Sum_probs=63.2

Q ss_pred             HHHHHHHHHh-cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh
Q 025775           19 FAKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET   97 (248)
Q Consensus        19 ~~~~~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   97 (248)
                      .+...+++.. ..++.+|||+|||+|..+..++.... .++++|+++.+++.++.+....   .++.++++|+...++. 
T Consensus        16 ~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~~---~~v~v~~~D~~~~~~~-   90 (253)
T TIGR00755        16 SVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSLY---ERLEVIEGDALKVDLP-   90 (253)
T ss_pred             HHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCcC---CcEEEEECchhcCChh-
Confidence            3444455544 34788999999999999999987765 7999999999999998776432   2488999999775542 


Q ss_pred             hhcccCCcee---EEEeccchh
Q 025775           98 QMQEKANQAD---LVCCFQHLQ  116 (248)
Q Consensus        98 ~~~~~~~~fD---~V~~~~~l~  116 (248)
                             .+|   +|+++...|
T Consensus        91 -------~~d~~~~vvsNlPy~  105 (253)
T TIGR00755        91 -------DFPKQLKVVSNLPYN  105 (253)
T ss_pred             -------HcCCcceEEEcCChh
Confidence                   345   776655433

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=98.65  E-value=2.2e-07  Score=79.13  Aligned_cols=97  Identities=19%  Similarity=0.179  Sum_probs=82.9

Q ss_pred             CCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEe
Q 025775           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (248)
Q Consensus        32 ~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~  111 (248)
                      -...+|+|.|.|..+..+.. .+.++.+++++...+..++..+. .+    ++.+.+|..+. .        .+-|+|++
T Consensus       178 v~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~-~--------P~~daI~m  242 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQD-T--------PKGDAIWM  242 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhhhc-CC----cceeccccccc-C--------CCcCeEEE
Confidence            36899999999999999888 55589999999999988877764 33    77888888664 2        24579999


Q ss_pred             ccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       112 ~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      .+.+|+  .+.++..++++++.+.|+|||.+++.
T Consensus       243 kWiLhd--wtDedcvkiLknC~~sL~~~GkIiv~  274 (342)
T KOG3178|consen  243 KWILHD--WTDEDCVKILKNCKKSLPPGGKIIVV  274 (342)
T ss_pred             Eeeccc--CChHHHHHHHHHHHHhCCCCCEEEEE
Confidence            999999  88999999999999999999999887

>PLN02823 spermine synthase

Probab=98.61  E-value=4.4e-07  Score=78.51  Aligned_cols=111  Identities=15%  Similarity=0.104  Sum_probs=78.4

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcC---CCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      ...+||.||+|.|..+..+++. +..+++.+|+++.+++.|++.+....   ...+++++.+|...  +   +....++|
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~--~---L~~~~~~y  177 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARA--E---LEKRDEKF  177 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHH--H---HhhCCCCc
Confidence            4578999999999988877775 45689999999999999998764321   12468899999744  2   22245789


Q ss_pred             eEEEeccchhhhcCCH--HHHHHHHH-HHhccccCCcEEEEEe
Q 025775          107 DLVCCFQHLQMCFETE--ERARRLLQ-NVSSLLKPGGYFLGIT  146 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~--~~~~~~l~-~~~~~LkpgG~~i~~~  146 (248)
                      |+|++-..-...-...  --..++++ .+.+.|+|||++++..
T Consensus       178 DvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~  220 (336)
T PLN02823        178 DVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA  220 (336)
T ss_pred             cEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence            9998863111000000  01356787 8999999999998763

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=98.59  E-value=2.9e-07  Score=75.10  Aligned_cols=85  Identities=14%  Similarity=0.224  Sum_probs=64.7

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      +....|.|+|||.+.++.    .-...|..+|+-+.                +-..+.+|+.+.++      .+++.|++
T Consensus       179 ~~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a~----------------~~~V~~cDm~~vPl------~d~svDva  232 (325)
T KOG3045|consen  179 PKNIVIADFGCGEAKIAS----SERHKVHSFDLVAV----------------NERVIACDMRNVPL------EDESVDVA  232 (325)
T ss_pred             cCceEEEecccchhhhhh----ccccceeeeeeecC----------------CCceeeccccCCcC------ccCcccEE
Confidence            456789999999987553    32337899997431                14578999999887      58999998


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      ++-.++..     .++..++.++.++|++||.+.+.
T Consensus       233 V~CLSLMg-----tn~~df~kEa~RiLk~gG~l~IA  263 (325)
T KOG3045|consen  233 VFCLSLMG-----TNLADFIKEANRILKPGGLLYIA  263 (325)
T ss_pred             EeeHhhhc-----ccHHHHHHHHHHHhccCceEEEE
Confidence            66444332     34778999999999999999998

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.57  E-value=1.7e-07  Score=75.17  Aligned_cols=101  Identities=17%  Similarity=0.150  Sum_probs=70.5

Q ss_pred             HhcCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCc
Q 025775           27 IYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (248)
Q Consensus        27 ~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (248)
                      ..+.++..|+|+.||-|.++..++.. ..+.|+++|++|.+++..++....++....+..+++|+....       ....
T Consensus        97 ~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~-------~~~~  169 (200)
T PF02475_consen   97 NLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL-------PEGK  169 (200)
T ss_dssp             TC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----------TT-
T ss_pred             hcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc-------Cccc
Confidence            34678999999999999999999873 455899999999999999988877766666889999985422       2578


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEE
Q 025775          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYF  142 (248)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~  142 (248)
                      +|.|++..- +       ....++..+.+++++||++
T Consensus       170 ~drvim~lp-~-------~~~~fl~~~~~~~~~~g~i  198 (200)
T PF02475_consen  170 FDRVIMNLP-E-------SSLEFLDAALSLLKEGGII  198 (200)
T ss_dssp             EEEEEE--T-S-------SGGGGHHHHHHHEEEEEEE
T ss_pred             cCEEEECCh-H-------HHHHHHHHHHHHhcCCcEE
Confidence            999987551 1       1335777788889999876

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=98.55  E-value=5.5e-07  Score=72.06  Aligned_cols=113  Identities=14%  Similarity=0.201  Sum_probs=77.7

Q ss_pred             hHhHHHHHHHHHhcC-CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCc
Q 025775           16 LYEFAKTALIKIYSH-PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN   94 (248)
Q Consensus        16 ~~~~~~~~li~~~~~-~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~   94 (248)
                      +.+|++......... +..++||+||=+....  ....+.-.|+.||+++.-                -...+.|..+-+
T Consensus        35 lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~--~s~~~~fdvt~IDLns~~----------------~~I~qqDFm~rp   96 (219)
T PF11968_consen   35 LVEWLKELGVRPKNGRPKLRLLEVGALSTDNA--CSTSGWFDVTRIDLNSQH----------------PGILQQDFMERP   96 (219)
T ss_pred             HHHHhhhhccccccccccceEEeecccCCCCc--ccccCceeeEEeecCCCC----------------CCceeeccccCC
Confidence            446666554333222 3479999999755422  222244479999998621                235666765544


Q ss_pred             hhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcE-----EEEEecChh
Q 025775           95 FETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGY-----FLGITPDSS  150 (248)
Q Consensus        95 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~-----~i~~~~~~~  150 (248)
                      +..   ...++||+|+++.++.| +.+....-+++..+.+.|+|+|.     +++.+|.+-
T Consensus        97 lp~---~~~e~FdvIs~SLVLNf-VP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C  153 (219)
T PF11968_consen   97 LPK---NESEKFDVISLSLVLNF-VPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC  153 (219)
T ss_pred             CCC---CcccceeEEEEEEEEee-CCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH
Confidence            421   13578999999999997 45677889999999999999999     888888763

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.53  E-value=1e-06  Score=70.27  Aligned_cols=117  Identities=17%  Similarity=0.138  Sum_probs=80.3

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCC--CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc--cCC
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALI--ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~--~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~  104 (248)
                      +.++..|+|||+.+|++++..+....  ..|+|+|+.|--.         .   ..+.++++|++..+..+.+.+  ...
T Consensus        43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~---------~---~~V~~iq~d~~~~~~~~~l~~~l~~~  110 (205)
T COG0293          43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP---------I---PGVIFLQGDITDEDTLEKLLEALGGA  110 (205)
T ss_pred             ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc---------C---CCceEEeeeccCccHHHHHHHHcCCC
Confidence            55899999999999999998877622  3599999976321         1   128899999998765444332  234


Q ss_pred             ceeEEEeccch--------hhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh---hHHHHHHHH
Q 025775          105 QADLVCCFQHL--------QMCFETEERARRLLQNVSSLLKPGGYFLGITPDS---STIWAKYQK  158 (248)
Q Consensus       105 ~fD~V~~~~~l--------~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~---~~~~~~~~~  158 (248)
                      ++|+|+|-++-        ++ .....-...+++-+..+|+|||.|++-..-+   +.+...+++
T Consensus       111 ~~DvV~sD~ap~~~g~~~~Dh-~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~  174 (205)
T COG0293         111 PVDVVLSDMAPNTSGNRSVDH-ARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRR  174 (205)
T ss_pred             CcceEEecCCCCcCCCccccH-HHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHH
Confidence            57999986644        11 0112234566777788999999999885544   555555554

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.51  E-value=6.3e-07  Score=73.67  Aligned_cols=74  Identities=14%  Similarity=0.077  Sum_probs=64.5

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      +++++.|||+|.|||.++..+...+. .|+++++++.|+....++.++.....+...+++|....++        ..||.
T Consensus        56 ~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~--------P~fd~  126 (315)
T KOG0820|consen   56 LKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL--------PRFDG  126 (315)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC--------cccce
Confidence            56899999999999999999988766 8999999999999999999887766789999999977554        46888


Q ss_pred             EEe
Q 025775          109 VCC  111 (248)
Q Consensus       109 V~~  111 (248)
                      +++
T Consensus       127 cVs  129 (315)
T KOG0820|consen  127 CVS  129 (315)
T ss_pred             eec
Confidence            877

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.50  E-value=2.4e-06  Score=68.77  Aligned_cols=107  Identities=10%  Similarity=0.088  Sum_probs=83.3

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc-cCCcee
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQAD  107 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~fD  107 (248)
                      ...++||||.=||..+..++..  .-++|+++|++++..+.+....+..+...++.++++++.+. +.+.+++ ..++||
T Consensus        73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~es-Ld~l~~~~~~~tfD  151 (237)
T KOG1663|consen   73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALES-LDELLADGESGTFD  151 (237)
T ss_pred             CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhh-HHHHHhcCCCCcee
Confidence            5689999999999988888765  34699999999999999988877777778899999987542 2222221 357899


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      .++.-.       .........+++.+++|+||++++.
T Consensus       152 faFvDa-------dK~nY~~y~e~~l~Llr~GGvi~~D  182 (237)
T KOG1663|consen  152 FAFVDA-------DKDNYSNYYERLLRLLRVGGVIVVD  182 (237)
T ss_pred             EEEEcc-------chHHHHHHHHHHHhhcccccEEEEe
Confidence            996644       1333458889999999999999987

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.49  E-value=1.7e-07  Score=74.15  Aligned_cols=116  Identities=18%  Similarity=0.129  Sum_probs=69.5

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcC--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh----hcccCC
Q 025775           31 PYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQEKAN  104 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~--~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~~~  104 (248)
                      ++.+||||||++|+++..+....  ...|+|+|+.+..        +..    .+.++++|+.+..-...    +.....
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~--------~~~----~~~~i~~d~~~~~~~~~i~~~~~~~~~   90 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD--------PLQ----NVSFIQGDITNPENIKDIRKLLPESGE   90 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG--------S-T----TEEBTTGGGEEEEHSHHGGGSHGTTTC
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEeccccc--------ccc----ceeeeecccchhhHHHhhhhhcccccc
Confidence            34899999999999999998876  5699999998871        011    25666777654322111    211236


Q ss_pred             ceeEEEeccchhhh----cC---CHHHHHHHHHHHhccccCCcEEEEEecCh---hHHHHHHHH
Q 025775          105 QADLVCCFQHLQMC----FE---TEERARRLLQNVSSLLKPGGYFLGITPDS---STIWAKYQK  158 (248)
Q Consensus       105 ~fD~V~~~~~l~~~----~~---~~~~~~~~l~~~~~~LkpgG~~i~~~~~~---~~~~~~~~~  158 (248)
                      ++|+|+|-.+....    ..   ..+.....+.-+...|+|||.+++.+...   ..+...+..
T Consensus        91 ~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~  154 (181)
T PF01728_consen   91 KFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKR  154 (181)
T ss_dssp             SESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHH
T ss_pred             CcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHh
Confidence            89999998743221    11   12233445556667799999999875544   344444443

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.49  E-value=9.3e-07  Score=77.94  Aligned_cols=108  Identities=15%  Similarity=0.161  Sum_probs=77.6

Q ss_pred             CCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        32 ~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      +.+|||++||+|..+..++.. +...|+++|+++.+++.+++..+.++. ..+.+.++|+..  +   +.. ..+||+|+
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~-~~~~v~~~Da~~--~---l~~-~~~fD~V~  130 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL-ENEKVFNKDANA--L---LHE-ERKFDVVD  130 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CceEEEhhhHHH--H---Hhh-cCCCCEEE
Confidence            468999999999999888664 555899999999999999987765543 235678888733  1   111 35799997


Q ss_pred             eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHH
Q 025775          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA  154 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~  154 (248)
                      +.-        ......++....+.+++||++.++.-|...+..
T Consensus       131 lDP--------~Gs~~~~l~~al~~~~~~gilyvSAtD~~~L~g  166 (382)
T PRK04338        131 IDP--------FGSPAPFLDSAIRSVKRGGLLCVTATDTAPLCG  166 (382)
T ss_pred             ECC--------CCCcHHHHHHHHHHhcCCCEEEEEecCchhhcC
Confidence            743        112345667766778999999999666655533

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.49  E-value=3.1e-06  Score=66.57  Aligned_cols=113  Identities=15%  Similarity=0.051  Sum_probs=81.6

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      .+.++||+-+|+|......++++...++.+|.+..++...++..+..+...++..+..|+.  .+.+... ..++||+|+
T Consensus        43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~--~~L~~~~-~~~~FDlVf  119 (187)
T COG0742          43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDAL--RALKQLG-TREPFDLVF  119 (187)
T ss_pred             CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHH--HHHHhcC-CCCcccEEE
Confidence            6899999999999999999999999999999999999999888777665566888999885  2221211 123599998


Q ss_pred             eccchhhhcCCHHHHHHHHHH--HhccccCCcEEEEEecCh
Q 025775          111 CFQHLQMCFETEERARRLLQN--VSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~--~~~~LkpgG~~i~~~~~~  149 (248)
                      .---.+.   ..-+....+..  -...|+|+|.+++-....
T Consensus       120 lDPPy~~---~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~  157 (187)
T COG0742         120 LDPPYAK---GLLDKELALLLLEENGWLKPGALIVVEHDKD  157 (187)
T ss_pred             eCCCCcc---chhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence            7554432   12111222333  457799999999875543

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.46  E-value=1.6e-06  Score=67.22  Aligned_cols=117  Identities=18%  Similarity=0.253  Sum_probs=80.4

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      ...-+||||||+|..+..+++.  +...+.++||+|.+++...+....++  .++..++.|+.+     .+  ..++.|+
T Consensus        43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~--~~~~~V~tdl~~-----~l--~~~~VDv  113 (209)
T KOG3191|consen   43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR--VHIDVVRTDLLS-----GL--RNESVDV  113 (209)
T ss_pred             CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC--CccceeehhHHh-----hh--ccCCccE
Confidence            3567999999999988888765  45589999999999999888776654  236677887643     22  2367777


Q ss_pred             EEecc---------------chhhh--cCCHHHHHHHHHHHhccccCCcEEEEEecCh---hHHHHHH
Q 025775          109 VCCFQ---------------HLQMC--FETEERARRLLQNVSSLLKPGGYFLGITPDS---STIWAKY  156 (248)
Q Consensus       109 V~~~~---------------~l~~~--~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~---~~~~~~~  156 (248)
                      ++-+-               ...|.  -...+-.+.++.++-..|.|.|.|++.....   .++.+.+
T Consensus       114 LvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l  181 (209)
T KOG3191|consen  114 LVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKIL  181 (209)
T ss_pred             EEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHH
Confidence            64321               00111  1334457888889999999999998885433   4444433

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=98.45  E-value=1e-05  Score=67.64  Aligned_cols=116  Identities=16%  Similarity=0.136  Sum_probs=77.7

Q ss_pred             hHHHHHHHHHhcC-----CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhc--CCCc---------
Q 025775           18 EFAKTALIKIYSH-----PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ--RKNF---------   81 (248)
Q Consensus        18 ~~~~~~li~~~~~-----~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~--~~~~---------   81 (248)
                      .++...|-..+.+     ...+||-.|||.|+++..++..++ .+.|.|.|--|+-...-.+...  ....         
T Consensus        38 ~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~  116 (270)
T PF07942_consen   38 SPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSF  116 (270)
T ss_pred             HHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecc
Confidence            4455555444431     357899999999999999999988 8999999999986655433210  0000         


Q ss_pred             ----------------------------eEEEEEcCCCCCchhhhhccc--CCceeEEEeccchhhhcCCHHHHHHHHHH
Q 025775           82 ----------------------------IAEFFEADPCAENFETQMQEK--ANQADLVCCFQHLQMCFETEERARRLLQN  131 (248)
Q Consensus        82 ----------------------------~~~~~~~d~~~~~~~~~~~~~--~~~fD~V~~~~~l~~~~~~~~~~~~~l~~  131 (248)
                                                  ++....+|..+     .....  .++||+|++.+    ..++.+.+-+.++.
T Consensus       117 sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e-----~y~~~~~~~~~d~VvT~F----FIDTA~Ni~~Yi~t  187 (270)
T PF07942_consen  117 SNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLE-----VYGPDENKGSFDVVVTCF----FIDTAENIIEYIET  187 (270)
T ss_pred             cCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEE-----ecCCcccCCcccEEEEEE----EeechHHHHHHHHH
Confidence                                        11222222211     11111  36899887765    45788889999999


Q ss_pred             HhccccCCcEEE
Q 025775          132 VSSLLKPGGYFL  143 (248)
Q Consensus       132 ~~~~LkpgG~~i  143 (248)
                      |.++|||||+.|
T Consensus       188 I~~lLkpgG~WI  199 (270)
T PF07942_consen  188 IEHLLKPGGYWI  199 (270)
T ss_pred             HHHHhccCCEEE
Confidence            999999999765

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=9.7e-07  Score=69.96  Aligned_cols=104  Identities=17%  Similarity=0.104  Sum_probs=76.0

Q ss_pred             HHhcCCCCeEEEEcCCCCccHhHHHHc---CCCeEEEEeCChHHHHHHHHHHHhcC---------CCceEEEEEcCCCCC
Q 025775           26 KIYSHPYVTVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQR---------KNFIAEFFEADPCAE   93 (248)
Q Consensus        26 ~~~~~~~~~VLDlGcG~G~~~~~l~~~---~~~~v~giDis~~~l~~a~~~~~~~~---------~~~~~~~~~~d~~~~   93 (248)
                      ...+.||.+.||+|+|+|.++..++..   ......|||.-++.++.+++.....-         ...++.++++|....
T Consensus        77 ~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g  156 (237)
T KOG1661|consen   77 DDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKG  156 (237)
T ss_pred             HHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCcccc
Confidence            334679999999999999988777632   33345999999999999988764321         123467889998664


Q ss_pred             chhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775           94 NFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus        94 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      .-      ...+||.|.|..+.          .+..+++...|+|||.+++-
T Consensus       157 ~~------e~a~YDaIhvGAaa----------~~~pq~l~dqL~~gGrllip  192 (237)
T KOG1661|consen  157 YA------EQAPYDAIHVGAAA----------SELPQELLDQLKPGGRLLIP  192 (237)
T ss_pred             CC------ccCCcceEEEccCc----------cccHHHHHHhhccCCeEEEe
Confidence            43      35789999987632          23456677788999998876

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.43  E-value=1.3e-06  Score=72.61  Aligned_cols=113  Identities=12%  Similarity=0.043  Sum_probs=77.7

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcC---CCceEEEEEcCCCCCchhhhhcccCC
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQEKAN  104 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~  104 (248)
                      .+...+||=||-|.|..+..+.+.+ ..+++++|+++.+++.|++.+....   ...+++++..|...     .+.....
T Consensus        74 ~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~-----~l~~~~~  148 (246)
T PF01564_consen   74 HPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRK-----FLKETQE  148 (246)
T ss_dssp             SSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHH-----HHHTSSS
T ss_pred             CCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHH-----HHHhccC
Confidence            3467899999999999998887765 5799999999999999998665421   12358889998732     2222345


Q ss_pred             -ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775          105 -QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       105 -~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                       +||+|++-..-.......--..++++.+.+.|+|||+++...
T Consensus       149 ~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~  191 (246)
T PF01564_consen  149 EKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA  191 (246)
T ss_dssp             T-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence             899998743211100000114679999999999999999875

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.43  E-value=1.2e-06  Score=74.37  Aligned_cols=86  Identities=15%  Similarity=0.084  Sum_probs=63.1

Q ss_pred             HHHHHhc-CCCCeEEEEcCCCCccHhHHHHcC--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhh
Q 025775           23 ALIKIYS-HPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM   99 (248)
Q Consensus        23 ~li~~~~-~~~~~VLDlGcG~G~~~~~l~~~~--~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   99 (248)
                      .+++.+. .++..++|.+||.|+++..++...  .+.|+|+|.++.|++.|+++...   ..++.++++|..+.  ...+
T Consensus        10 Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l--~~~l   84 (296)
T PRK00050         10 EVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNL--KEVL   84 (296)
T ss_pred             HHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHH--HHHH
Confidence            3444443 578899999999999999998873  36999999999999999988754   23588999988653  2222


Q ss_pred             cccCCceeEEEecc
Q 025775          100 QEKANQADLVCCFQ  113 (248)
Q Consensus       100 ~~~~~~fD~V~~~~  113 (248)
                      .....++|.|++..
T Consensus        85 ~~~~~~vDgIl~DL   98 (296)
T PRK00050         85 AEGLGKVDGILLDL   98 (296)
T ss_pred             HcCCCccCEEEECC
Confidence            21112788887744

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.39  E-value=1.7e-06  Score=74.46  Aligned_cols=115  Identities=18%  Similarity=0.170  Sum_probs=72.3

Q ss_pred             CCCeEEEEcCCCCccHhHHHH--------cCCCeEEEEeCChHHHHHHHHHHHhcCCC-ceEEEEEcCCCCCchhhhhcc
Q 025775           31 PYVTVCDLYCGAGVDVDKWET--------ALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQE  101 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~--------~~~~~v~giDis~~~l~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~  101 (248)
                      ++.+|+|.+||+|.++.....        .....++|+|+++.++..|+....-.+.. ....+.+.|....+...    
T Consensus        46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~----  121 (311)
T PF02384_consen   46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFI----  121 (311)
T ss_dssp             TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCT----
T ss_pred             ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccc----
Confidence            567899999999999877765        13448999999999999887654332211 12357788875544310    


Q ss_pred             cCCceeEEEeccchhhh------c-----------CCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          102 KANQADLVCCFQHLQMC------F-----------ETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       102 ~~~~fD~V~~~~~l~~~------~-----------~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      ....||+|++.--+-..      .           .....--.++..+.+.|++||.+.+.+|++
T Consensus       122 ~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~  186 (311)
T PF02384_consen  122 KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNG  186 (311)
T ss_dssp             ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHH
T ss_pred             cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecch
Confidence            14689999985322110      0           000112348899999999999998887765

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.37  E-value=4.5e-06  Score=70.42  Aligned_cols=106  Identities=14%  Similarity=0.134  Sum_probs=79.2

Q ss_pred             CeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcC--C-CceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           33 VTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQR--K-NFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        33 ~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~--~-~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      .+||-||-|.|+.+..+.+.. ..+++.+||++..++.+++.+....  . -.+++.+..|..+     .+.....+||+
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~-----~v~~~~~~fDv  152 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVE-----FLRDCEEKFDV  152 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHH-----HHHhCCCcCCE
Confidence            599999999999999988874 6799999999999999998775422  1 2457788887633     23333458999


Q ss_pred             EEeccchhhhcCCHH--HHHHHHHHHhccccCCcEEEEE
Q 025775          109 VCCFQHLQMCFETEE--RARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       109 V~~~~~l~~~~~~~~--~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      |++...=.-  .+.+  -..++.+.+++.|+++|+++..
T Consensus       153 Ii~D~tdp~--gp~~~Lft~eFy~~~~~~L~~~Gi~v~q  189 (282)
T COG0421         153 IIVDSTDPV--GPAEALFTEEFYEGCRRALKEDGIFVAQ  189 (282)
T ss_pred             EEEcCCCCC--CcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence            988542210  1111  1478999999999999999988

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=98.35  E-value=4.6e-07  Score=75.04  Aligned_cols=99  Identities=24%  Similarity=0.319  Sum_probs=78.3

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      .+..++|+|||.|-.+..-   +...++|.|++...+..|++.-.       .....+|+...+.      .+.+||.++
T Consensus        45 ~gsv~~d~gCGngky~~~~---p~~~~ig~D~c~~l~~~ak~~~~-------~~~~~ad~l~~p~------~~~s~d~~l  108 (293)
T KOG1331|consen   45 TGSVGLDVGCGNGKYLGVN---PLCLIIGCDLCTGLLGGAKRSGG-------DNVCRADALKLPF------REESFDAAL  108 (293)
T ss_pred             CcceeeecccCCcccCcCC---CcceeeecchhhhhccccccCCC-------ceeehhhhhcCCC------CCCccccch
Confidence            5889999999999643221   44478999999988877764311       2467888877776      578999999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      +..++|+ +.+......+++++.+.|+|||..++..
T Consensus       109 siavihh-lsT~~RR~~~l~e~~r~lrpgg~~lvyv  143 (293)
T KOG1331|consen  109 SIAVIHH-LSTRERRERALEELLRVLRPGGNALVYV  143 (293)
T ss_pred             hhhhhhh-hhhHHHHHHHHHHHHHHhcCCCceEEEE
Confidence            9999998 4567788999999999999999977763

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.35  E-value=8.3e-06  Score=71.63  Aligned_cols=112  Identities=10%  Similarity=0.069  Sum_probs=72.5

Q ss_pred             CCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc----------
Q 025775           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE----------  101 (248)
Q Consensus        32 ~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~----------  101 (248)
                      +.+|||++||+|.++..++.. ..+|+|+|+++.+++.|++....++. .++.++++|+.+.  .+.+..          
T Consensus       207 ~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~-~~v~~~~~d~~~~--l~~~~~~~~~~~~~~~  282 (362)
T PRK05031        207 KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGI-DNVQIIRMSAEEF--TQAMNGVREFNRLKGI  282 (362)
T ss_pred             CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEECCHHHH--HHHHhhcccccccccc
Confidence            357999999999999877654 45999999999999999988766543 2588999998442  111110          


Q ss_pred             --cCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHH
Q 025775          102 --KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ  157 (248)
Q Consensus       102 --~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~  157 (248)
                        ...+||+|+..-- .     ......+++.+.+   |++++++++.. ..+.+.+.
T Consensus       283 ~~~~~~~D~v~lDPP-R-----~G~~~~~l~~l~~---~~~ivyvSC~p-~tlarDl~  330 (362)
T PRK05031        283 DLKSYNFSTIFVDPP-R-----AGLDDETLKLVQA---YERILYISCNP-ETLCENLE  330 (362)
T ss_pred             cccCCCCCEEEECCC-C-----CCCcHHHHHHHHc---cCCEEEEEeCH-HHHHHHHH
Confidence              0125899976432 1     0112344455543   67777776433 55554443

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.33  E-value=4.6e-06  Score=76.32  Aligned_cols=118  Identities=13%  Similarity=0.060  Sum_probs=83.4

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      .+..+||||||.|.++..++.. +-..++|+|++...+..+..+....+. .++.+++.|+..  +...+  +++++|.|
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l-~N~~~~~~~~~~--~~~~~--~~~sv~~i  421 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI-TNFLLFPNNLDL--ILNDL--PNNSLDGI  421 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC-CeEEEEcCCHHH--HHHhc--CcccccEE
Confidence            4678999999999999999887 445899999999999888777655442 346677766521  21122  46789999


Q ss_pred             Eeccchhhhc----CCHHHHHHHHHHHhccccCCcEEEEEecChhHHH
Q 025775          110 CCFQHLQMCF----ETEERARRLLQNVSSLLKPGGYFLGITPDSSTIW  153 (248)
Q Consensus       110 ~~~~~l~~~~----~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~  153 (248)
                      .+.|.=.|--    ...--...+++.+.+.|+|||.+.+.+-+.+...
T Consensus       422 ~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~  469 (506)
T PRK01544        422 YILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFY  469 (506)
T ss_pred             EEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHH
Confidence            8877432200    1111236799999999999999998876665443

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=98.32  E-value=6.5e-06  Score=73.10  Aligned_cols=128  Identities=19%  Similarity=0.231  Sum_probs=97.9

Q ss_pred             cchhhhhHhHH-HHHHHHHhcCCCC-eEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEE
Q 025775           10 ELTHHRLYEFA-KTALIKIYSHPYV-TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFE   87 (248)
Q Consensus        10 ~~~~~~~~~~~-~~~li~~~~~~~~-~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~   87 (248)
                      ..+...+-.|+ ....|..++.+.. ++|-+|||.-.....+...++..++.+|+|+..++....+....  .....+..
T Consensus        25 ~~~~ewY~~~l~l~~~i~~~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~--~~~~~~~~  102 (482)
T KOG2352|consen   25 SDPFEWYGALLSLSGSIMKYLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE--RPEMQMVE  102 (482)
T ss_pred             CChHHHHHHHHHHHHHHHHhhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC--CcceEEEE
Confidence            34444444444 3444555666666 99999999998888887888999999999999999887765422  23478899


Q ss_pred             cCCCCCchhhhhcccCCceeEEEeccchhhhcCCHH------HHHHHHHHHhccccCCcEEEEE
Q 025775           88 ADPCAENFETQMQEKANQADLVCCFQHLQMCFETEE------RARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~------~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +|+....+      .+.+||+|+.-..++.++.+.+      .....+.+++++|++||.++..
T Consensus       103 ~d~~~l~f------edESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~sv  160 (482)
T KOG2352|consen  103 MDMDQLVF------EDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISV  160 (482)
T ss_pred             ecchhccC------CCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEE
Confidence            99988888      5889999999998887665443      3457889999999999997655

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.32  E-value=5.6e-06  Score=74.73  Aligned_cols=113  Identities=12%  Similarity=0.043  Sum_probs=79.7

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      .++.+|||+|||+|+=+..++..  +.+.+++.|+++.-+...++..+..+. .++...+.|.....-  .   ....||
T Consensus       112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~-~nv~v~~~D~~~~~~--~---~~~~fD  185 (470)
T PRK11933        112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV-SNVALTHFDGRVFGA--A---LPETFD  185 (470)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCchhhhhh--h---chhhcC
Confidence            48899999999999988888765  345899999999999998888776553 236777788654211  1   245799


Q ss_pred             EEEe----ccc--hhhh-----cCCH-------HHHHHHHHHHhccccCCcEEEEEecC
Q 025775          108 LVCC----FQH--LQMC-----FETE-------ERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       108 ~V~~----~~~--l~~~-----~~~~-------~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      .|++    +..  ++.-     ..+.       ....+++.++.++|||||+++-++..
T Consensus       186 ~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT  244 (470)
T PRK11933        186 AILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT  244 (470)
T ss_pred             eEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence            9984    321  1110     0111       12368899999999999999877443

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=98.32  E-value=1.1e-05  Score=60.68  Aligned_cols=102  Identities=24%  Similarity=0.249  Sum_probs=68.5

Q ss_pred             EEEEcCCCCccHhHHHHcCC--CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC--CchhhhhcccC-CceeEE
Q 025775           35 VCDLYCGAGVDVDKWETALI--ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA--ENFETQMQEKA-NQADLV  109 (248)
Q Consensus        35 VLDlGcG~G~~~~~l~~~~~--~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~-~~fD~V  109 (248)
                      ++|+|||+|... .+.....  ..++|+|+++.++..+........ ...+.+...|...  .++      .. ..||++
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~d~~  123 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAG-LGLVDFVVADALGGVLPF------EDSASFDLV  123 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcC-CCceEEEEeccccCCCCC------CCCCceeEE
Confidence            999999999855 2222222  378999999999998555443211 0015677777655  333      23 479999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                       +....++...    ....+.++.+.++|+|.+++.....
T Consensus       124 -~~~~~~~~~~----~~~~~~~~~~~l~~~g~~~~~~~~~  158 (257)
T COG0500         124 -ISLLVLHLLP----PAKALRELLRVLKPGGRLVLSDLLR  158 (257)
T ss_pred             -eeeeehhcCC----HHHHHHHHHHhcCCCcEEEEEeccC
Confidence             5444433222    6788999999999999999886554

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.31  E-value=3.1e-06  Score=74.35  Aligned_cols=103  Identities=9%  Similarity=0.149  Sum_probs=77.0

Q ss_pred             CeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           33 VTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        33 ~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      .+|||+.||+|..+..++..  +...|+++|+++.+++.+++..+.++. .++.+++.|+...     +.....+||+|.
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~-~~~~v~~~Da~~~-----l~~~~~~fDvId  119 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV-ENIEVPNEDAANV-----LRYRNRKFHVID  119 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEchhHHHH-----HHHhCCCCCEEE
Confidence            68999999999999988876  567999999999999999988765542 2467888887432     111235799996


Q ss_pred             eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      ..- ..       ....++..+.+.+++||++.++.-|.
T Consensus       120 lDP-fG-------s~~~fld~al~~~~~~glL~vTaTD~  150 (374)
T TIGR00308       120 IDP-FG-------TPAPFVDSAIQASAERGLLLVTATDT  150 (374)
T ss_pred             eCC-CC-------CcHHHHHHHHHhcccCCEEEEEeccc
Confidence            643 11       12357788888899999999994444

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.31  E-value=1e-05  Score=65.23  Aligned_cols=120  Identities=21%  Similarity=0.206  Sum_probs=67.6

Q ss_pred             hHHHHHHHHHhcCCCCeEEEEcCCCCccHhHHHH-cCCCeEEEEeCChHHHHHHHHHHHh-------cC-CCceEEEEEc
Q 025775           18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWET-ALIANYIGIDVATSGIGEARDTWEN-------QR-KNFIAEFFEA   88 (248)
Q Consensus        18 ~~~~~~li~~~~~~~~~VLDlGcG~G~~~~~l~~-~~~~~v~giDis~~~l~~a~~~~~~-------~~-~~~~~~~~~~   88 (248)
                      ..+...+-..-+.++...+|||||.|......+. .+....+|+++.+...+.|......       .+ ...++.+.++
T Consensus        29 ~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~g  108 (205)
T PF08123_consen   29 EFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHG  108 (205)
T ss_dssp             HHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS
T ss_pred             HHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeecc
Confidence            3344443322355889999999999987765543 3776799999999988777653221       11 1346888999


Q ss_pred             CCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775           89 DPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus        89 d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      |+.+.++....   -...|+|+++...   |  .+++...+.+....||+|..++.+
T Consensus       109 dfl~~~~~~~~---~s~AdvVf~Nn~~---F--~~~l~~~L~~~~~~lk~G~~IIs~  157 (205)
T PF08123_consen  109 DFLDPDFVKDI---WSDADVVFVNNTC---F--DPDLNLALAELLLELKPGARIIST  157 (205)
T ss_dssp             -TTTHHHHHHH---GHC-SEEEE--TT---T---HHHHHHHHHHHTTS-TT-EEEES
T ss_pred             CccccHhHhhh---hcCCCEEEEeccc---c--CHHHHHHHHHHHhcCCCCCEEEEC
Confidence            98775543221   1347899887632   2  334555667788889999887754

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=98.30  E-value=1.2e-06  Score=76.36  Aligned_cols=109  Identities=20%  Similarity=0.176  Sum_probs=86.9

Q ss_pred             HhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           27 IYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        27 ~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      .-+.++..++|+|||-|.............++|+|.++-.+..+...........+..++.+|+...++      .++.|
T Consensus       106 ~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~f------edn~f  179 (364)
T KOG1269|consen  106 ESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPF------EDNTF  179 (364)
T ss_pred             hcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCC------Ccccc
Confidence            335578899999999999988887777679999999999888777655443333345668888877776      47899


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      |.+.+..+..|    .++...+++++.++++|||+++.-
T Consensus       180 d~v~~ld~~~~----~~~~~~~y~Ei~rv~kpGG~~i~~  214 (364)
T KOG1269|consen  180 DGVRFLEVVCH----APDLEKVYAEIYRVLKPGGLFIVK  214 (364)
T ss_pred             CcEEEEeeccc----CCcHHHHHHHHhcccCCCceEEeH
Confidence            99988876655    566888999999999999999864

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.26  E-value=9.7e-06  Score=70.96  Aligned_cols=112  Identities=11%  Similarity=0.065  Sum_probs=72.1

Q ss_pred             CCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc-------c--
Q 025775           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-------K--  102 (248)
Q Consensus        32 ~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-------~--  102 (248)
                      +.+|||++||+|.++..++.. ...|+|+|+++.|++.|++....++. .++.++++|+.+.  ......       .  
T Consensus       198 ~~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~-~~v~~~~~d~~~~--~~~~~~~~~~~~~~~~  273 (353)
T TIGR02143       198 KGDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNI-DNVQIIRMSAEEF--TQAMNGVREFRRLKGI  273 (353)
T ss_pred             CCcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEEcCHHHH--HHHHhhcccccccccc
Confidence            347999999999999877655 45999999999999999988766553 2488999998442  111000       0  


Q ss_pred             ---CCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHH
Q 025775          103 ---ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ  157 (248)
Q Consensus       103 ---~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~  157 (248)
                         ...||+|+..-- ..     .....+++.+.+   |+++++++ .+...+.+.+.
T Consensus       274 ~~~~~~~d~v~lDPP-R~-----G~~~~~l~~l~~---~~~ivYvs-C~p~tlaRDl~  321 (353)
T TIGR02143       274 DLKSYNCSTIFVDPP-RA-----GLDPDTCKLVQA---YERILYIS-CNPETLKANLE  321 (353)
T ss_pred             ccccCCCCEEEECCC-CC-----CCcHHHHHHHHc---CCcEEEEE-cCHHHHHHHHH
Confidence               123798866432 11     112344454443   77777776 44455555554

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.23  E-value=7.5e-07  Score=79.27  Aligned_cols=100  Identities=23%  Similarity=0.211  Sum_probs=63.9

Q ss_pred             CeEEEEcCCCCccHhHHHHcCCCeEEEE---eCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           33 VTVCDLYCGAGVDVDKWETALIANYIGI---DVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        33 ~~VLDlGcG~G~~~~~l~~~~~~~v~gi---Dis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      ..+||+|||+|.+...+...+.. ...+   |..+..++.|-+|--      .+.+-.......++      +.+.||+|
T Consensus       119 R~~LDvGcG~aSF~a~l~~r~V~-t~s~a~~d~~~~qvqfaleRGv------pa~~~~~~s~rLPf------p~~~fDmv  185 (506)
T PF03141_consen  119 RTALDVGCGVASFGAYLLERNVT-TMSFAPNDEHEAQVQFALERGV------PAMIGVLGSQRLPF------PSNAFDMV  185 (506)
T ss_pred             EEEEeccceeehhHHHHhhCCce-EEEcccccCCchhhhhhhhcCc------chhhhhhccccccC------Cccchhhh
Confidence            36999999999999999887652 2222   333445555544311      01111221233444      68899999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      .|..++..  ....+ ..+|-++-|+|+|||+|+.+.|.
T Consensus       186 Hcsrc~i~--W~~~~-g~~l~evdRvLRpGGyfv~S~pp  221 (506)
T PF03141_consen  186 HCSRCLIP--WHPND-GFLLFEVDRVLRPGGYFVLSGPP  221 (506)
T ss_pred             hccccccc--chhcc-cceeehhhhhhccCceEEecCCc
Confidence            99886653  11211 35788899999999999999654

; GO: 0008168 methyltransferase activity

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.22  E-value=8.2e-06  Score=70.28  Aligned_cols=107  Identities=17%  Similarity=0.085  Sum_probs=85.1

Q ss_pred             HHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCC
Q 025775           25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN  104 (248)
Q Consensus        25 i~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  104 (248)
                      +.....+|.+|||+-+|-|.++..++..+...|+++|++|.+++..++...-++....+..+++|+.....      ..+
T Consensus       182 va~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~------~~~  255 (341)
T COG2520         182 VAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAP------ELG  255 (341)
T ss_pred             HHhhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhh------ccc
Confidence            34455579999999999999999998887656999999999999999988777766668899999866443      127


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      .+|-|++..        .....+++....+.+++||++-.-
T Consensus       256 ~aDrIim~~--------p~~a~~fl~~A~~~~k~~g~iHyy  288 (341)
T COG2520         256 VADRIIMGL--------PKSAHEFLPLALELLKDGGIIHYY  288 (341)
T ss_pred             cCCEEEeCC--------CCcchhhHHHHHHHhhcCcEEEEE
Confidence            899998765        223556777778888889988766

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.19  E-value=2.8e-05  Score=73.97  Aligned_cols=131  Identities=16%  Similarity=0.081  Sum_probs=85.7

Q ss_pred             hHhHHHHHHHHHh--cCCCCeEEEEcCCCCccHhHHHHc-----------------------------------------
Q 025775           16 LYEFAKTALIKIY--SHPYVTVCDLYCGAGVDVDKWETA-----------------------------------------   52 (248)
Q Consensus        16 ~~~~~~~~li~~~--~~~~~~VLDlGcG~G~~~~~l~~~-----------------------------------------   52 (248)
                      ++.-+...++...  ..++..++|.+||+|.++...+..                                         
T Consensus       173 l~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~  252 (702)
T PRK11783        173 LKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGL  252 (702)
T ss_pred             CcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcc
Confidence            3333444444432  246789999999999988655431                                         


Q ss_pred             --CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHH
Q 025775           53 --LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQ  130 (248)
Q Consensus        53 --~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~  130 (248)
                        ....++|+|+++.+++.|+......+....+.+.++|+.+....    ...+++|+|+++--...-.....+...+..
T Consensus       253 ~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~----~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~  328 (702)
T PRK11783        253 AELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNP----LPKGPTGLVISNPPYGERLGEEPALIALYS  328 (702)
T ss_pred             cccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccc----cccCCCCEEEECCCCcCccCchHHHHHHHH
Confidence              01268999999999999999988777655688999998764331    013579999997432222233344444444


Q ss_pred             HHhccc---cCCcEEEEEecChh
Q 025775          131 NVSSLL---KPGGYFLGITPDSS  150 (248)
Q Consensus       131 ~~~~~L---kpgG~~i~~~~~~~  150 (248)
                      .+.+.+   .+|+.+++.+++..
T Consensus       329 ~lg~~lk~~~~g~~~~llt~~~~  351 (702)
T PRK11783        329 QLGRRLKQQFGGWNAALFSSSPE  351 (702)
T ss_pred             HHHHHHHHhCCCCeEEEEeCCHH
Confidence            444444   48999888777654

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.19  E-value=1.3e-05  Score=67.66  Aligned_cols=119  Identities=16%  Similarity=0.114  Sum_probs=75.6

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      ...+|||+|||+|.-+......  ...+++++|.|+.|++.++.............. ..+......      .....|+
T Consensus        33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~------~~~~~DL  105 (274)
T PF09243_consen   33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEW-RRVLYRDFL------PFPPDDL  105 (274)
T ss_pred             CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchh-hhhhhcccc------cCCCCcE
Confidence            4578999999999644333222  456899999999999999887654321111111 111110000      1223499


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE---ecChhHHHHHHHHhH
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI---TPDSSTIWAKYQKNV  160 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~---~~~~~~~~~~~~~~~  160 (248)
                      |++.+++-.+. + .....+++++.+.+.+  ++++.   ++.+...+...++.+
T Consensus       106 vi~s~~L~EL~-~-~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l  156 (274)
T PF09243_consen  106 VIASYVLNELP-S-AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQL  156 (274)
T ss_pred             EEEehhhhcCC-c-hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHH
Confidence            99999998743 3 6788888988888766  77777   555556666666544

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.18  E-value=1.6e-05  Score=73.28  Aligned_cols=80  Identities=11%  Similarity=0.063  Sum_probs=51.8

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcC---------CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc
Q 025775           31 PYVTVCDLYCGAGVDVDKWETAL---------IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE  101 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~---------~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  101 (248)
                      ...+|||.|||+|.++..++...         ...++|+|+++.++..++..+...+ .......+.|.....+.. ...
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~-~~~~~i~~~d~l~~~~~~-~~~  108 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA-LLEINVINFNSLSYVLLN-IES  108 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC-CCCceeeecccccccccc-ccc
Confidence            34689999999999998776431         1378999999999999988765543 122344445433211110 001


Q ss_pred             cCCceeEEEec
Q 025775          102 KANQADLVCCF  112 (248)
Q Consensus       102 ~~~~fD~V~~~  112 (248)
                      ..+.||+|+++
T Consensus       109 ~~~~fD~IIgN  119 (524)
T TIGR02987       109 YLDLFDIVITN  119 (524)
T ss_pred             ccCcccEEEeC
Confidence            23579999885

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.16  E-value=5.7e-06  Score=64.00  Aligned_cols=74  Identities=23%  Similarity=0.289  Sum_probs=52.0

Q ss_pred             eEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCc-eeEEEec
Q 025775           34 TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ-ADLVCCF  112 (248)
Q Consensus        34 ~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-fD~V~~~  112 (248)
                      .|+|+.||.|+.+..++... .+|+++|+++..++.|+...+--+...++.++++|..+.  ....  .... +|+|++.
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~-~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~--~~~~--~~~~~~D~vFlS   76 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTF-DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFEL--LKRL--KSNKIFDVVFLS   76 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHH--GGGB--------SEEEE-
T ss_pred             EEEEeccCcCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHH--Hhhc--cccccccEEEEC
Confidence            69999999999999998874 489999999999999998887766556799999998542  1111  1122 8999874

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=98.16  E-value=2.1e-05  Score=61.37  Aligned_cols=110  Identities=18%  Similarity=0.064  Sum_probs=70.8

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEc-CCCCCchhhhhcc--cC
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEA-DPCAENFETQMQE--KA  103 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~--~~  103 (248)
                      +.|+.+|||+||.+|.+++-..+.  +.+.+.|+|+-.-        .+..+    +.++++ |++++.....+.+  ++
T Consensus        67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~--------~p~~G----a~~i~~~dvtdp~~~~ki~e~lp~  134 (232)
T KOG4589|consen   67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI--------EPPEG----ATIIQGNDVTDPETYRKIFEALPN  134 (232)
T ss_pred             cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec--------cCCCC----cccccccccCCHHHHHHHHHhCCC
Confidence            358999999999999998766554  5568999998542        12223    556666 7776543222211  46


Q ss_pred             CceeEEEeccchhhhcCCHHH-------HHHHHHHHhccccCCcEEEEEecChh
Q 025775          104 NQADLVCCFQHLQMCFETEER-------ARRLLQNVSSLLKPGGYFLGITPDSS  150 (248)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~-------~~~~l~~~~~~LkpgG~~i~~~~~~~  150 (248)
                      .+.|+|++.++-.-.-....+       -.+++--....++|+|.|++-+.++.
T Consensus       135 r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~  188 (232)
T KOG4589|consen  135 RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS  188 (232)
T ss_pred             CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC
Confidence            789999987644211111111       22344445667789999999977773

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=98.14  E-value=2.9e-05  Score=62.60  Aligned_cols=104  Identities=14%  Similarity=0.082  Sum_probs=72.4

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      .+|.+||-||.++|...+.+..-  .-+.|.+++.|+.+....-...+...   ++--+-.|+..+.-...   .-+..|
T Consensus        72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~---NIiPIl~DAr~P~~Y~~---lv~~VD  145 (229)
T PF01269_consen   72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRP---NIIPILEDARHPEKYRM---LVEMVD  145 (229)
T ss_dssp             -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHST---TEEEEES-TTSGGGGTT---TS--EE
T ss_pred             CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCC---ceeeeeccCCChHHhhc---cccccc
Confidence            48999999999999998888765  35689999999977654433332222   26678889876543222   235899


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +|++.-+.      .++.+-++.|+...||+||.+++.
T Consensus       146 vI~~DVaQ------p~Qa~I~~~Na~~fLk~gG~~~i~  177 (229)
T PF01269_consen  146 VIFQDVAQ------PDQARIAALNARHFLKPGGHLIIS  177 (229)
T ss_dssp             EEEEE-SS------TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEecCCC------hHHHHHHHHHHHhhccCCcEEEEE
Confidence            99876532      345777899999999999999987

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.13  E-value=1.5e-05  Score=66.14  Aligned_cols=75  Identities=12%  Similarity=0.043  Sum_probs=59.5

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      ..++..|||||+|.|.++..++.... .|+++++++.+++..+++....   .+++.+++|+...++...     ..++.
T Consensus        28 ~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~---~n~~vi~~DaLk~d~~~l-----~~~~~   98 (259)
T COG0030          28 ISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAPY---DNLTVINGDALKFDFPSL-----AQPYK   98 (259)
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcccc---cceEEEeCchhcCcchhh-----cCCCE
Confidence            45789999999999999999988776 7999999999999988886522   348999999988776311     05677


Q ss_pred             EEec
Q 025775          109 VCCF  112 (248)
Q Consensus       109 V~~~  112 (248)
                      |+++
T Consensus        99 vVaN  102 (259)
T COG0030          99 VVAN  102 (259)
T ss_pred             EEEc
Confidence            7653

>PRK00536 speE spermidine synthase; Provisional

Probab=98.12  E-value=2e-05  Score=65.79  Aligned_cols=97  Identities=10%  Similarity=0.024  Sum_probs=71.7

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcC---CCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      +...+||=||.|-|+.+..+++.+. +|+.+||++.+++.+++.++...   ...+++++..      +.   ....++|
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~------~~---~~~~~~f  140 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ------LL---DLDIKKY  140 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh------hh---hccCCcC
Confidence            3568999999999999999988864 99999999999999998554311   1123555431      11   1123689


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      |+|++-..     .    ...+.+.+++.|+|||+++..
T Consensus       141 DVIIvDs~-----~----~~~fy~~~~~~L~~~Gi~v~Q  170 (262)
T PRK00536        141 DLIICLQE-----P----DIHKIDGLKRMLKEDGVFISV  170 (262)
T ss_pred             CEEEEcCC-----C----ChHHHHHHHHhcCCCcEEEEC
Confidence            99987642     1    256778999999999999987

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.09  E-value=3.6e-05  Score=63.49  Aligned_cols=112  Identities=15%  Similarity=0.145  Sum_probs=85.2

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      +.||.+|||-|.|+|.++..+++.  +.+++..+|+...-.+.|.+.++.++....+.+.+.|+....+..    +...+
T Consensus       103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~----ks~~a  178 (314)
T KOG2915|consen  103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI----KSLKA  178 (314)
T ss_pred             CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc----ccccc
Confidence            669999999999999999988776  567999999999999999999999888888999999998877632    35789


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCc-EEEEEecChhHHH
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGG-YFLGITPDSSTIW  153 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG-~~i~~~~~~~~~~  153 (248)
                      |.|+...--         .-.++--+.++||.+| ++....|+-+.+.
T Consensus       179 DaVFLDlPa---------Pw~AiPha~~~lk~~g~r~csFSPCIEQvq  217 (314)
T KOG2915|consen  179 DAVFLDLPA---------PWEAIPHAAKILKDEGGRLCSFSPCIEQVQ  217 (314)
T ss_pred             ceEEEcCCC---------hhhhhhhhHHHhhhcCceEEeccHHHHHHH
Confidence            999654422         2234444555777766 5655566655444

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=98.08  E-value=2.9e-05  Score=64.56  Aligned_cols=111  Identities=16%  Similarity=0.172  Sum_probs=69.6

Q ss_pred             CeEEEEcCC--CCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhc--ccCCce
Q 025775           33 VTVCDLYCG--AGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ--EKANQA  106 (248)
Q Consensus        33 ~~VLDlGcG--~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~f  106 (248)
                      .-.||||||  |-.....+++.  +-++|+.+|.+|..+..++..+..... ....++++|+.+..-  .+.  ...+-+
T Consensus        70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~--iL~~p~~~~~l  146 (267)
T PF04672_consen   70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEA--ILAHPEVRGLL  146 (267)
T ss_dssp             -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHH--HHCSHHHHCC-
T ss_pred             ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHH--HhcCHHHHhcC
Confidence            359999999  45566667654  567999999999999999998776542 247899999987431  111  011223


Q ss_pred             e-----EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775          107 D-----LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       107 D-----~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      |     .|++...+|++ ...++...++..+...|.||++++++..
T Consensus       147 D~~rPVavll~~vLh~v-~D~~dp~~iv~~l~d~lapGS~L~ish~  191 (267)
T PF04672_consen  147 DFDRPVAVLLVAVLHFV-PDDDDPAGIVARLRDALAPGSYLAISHA  191 (267)
T ss_dssp             -TTS--EEEECT-GGGS--CGCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred             CCCCCeeeeeeeeeccC-CCccCHHHHHHHHHHhCCCCceEEEEec
Confidence            3     45566778863 4456789999999999999999999933

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.06  E-value=6.3e-05  Score=59.64  Aligned_cols=103  Identities=18%  Similarity=0.150  Sum_probs=71.3

Q ss_pred             HhcCCCC-eEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCC
Q 025775           27 IYSHPYV-TVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN  104 (248)
Q Consensus        27 ~~~~~~~-~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  104 (248)
                      .+++... +++|||+|.|--...++-. +..+++.+|.+..-+...+.-....+. .++..++..+.+.       ....
T Consensus        43 ~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L-~nv~v~~~R~E~~-------~~~~  114 (184)
T PF02527_consen   43 PFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL-SNVEVINGRAEEP-------EYRE  114 (184)
T ss_dssp             GCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT--SSEEEEES-HHHT-------TTTT
T ss_pred             hhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC-CCEEEEEeeeccc-------ccCC
Confidence            3344444 8999999999777766544 445899999998876665554444332 1388888876441       1468


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +||+|++-.+.        .+..+++-+...+++||.+++.
T Consensus       115 ~fd~v~aRAv~--------~l~~l~~~~~~~l~~~G~~l~~  147 (184)
T PF02527_consen  115 SFDVVTARAVA--------PLDKLLELARPLLKPGGRLLAY  147 (184)
T ss_dssp             -EEEEEEESSS--------SHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CccEEEeehhc--------CHHHHHHHHHHhcCCCCEEEEE
Confidence            99999887632        2567888899999999998887

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=98.05  E-value=8.1e-05  Score=56.47  Aligned_cols=105  Identities=21%  Similarity=0.242  Sum_probs=67.3

Q ss_pred             CCCCeEEEEcCCCCccHhHHHH-----cCCCeEEEEeCChHHHHHHHHHHHhcC--CCceEEEEEcCCCCCchhhhhccc
Q 025775           30 HPYVTVCDLYCGAGVDVDKWET-----ALIANYIGIDVATSGIGEARDTWENQR--KNFIAEFFEADPCAENFETQMQEK  102 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~-----~~~~~v~giDis~~~l~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~  102 (248)
                      .+...|+|+|||.|.++..++.     ....+|+|+|.++..++.+..+.....  ...+..+.+++..+..       .
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-------~   96 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-------S   96 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-------c
Confidence            4678999999999999988887     544599999999999999888776543  2223455555442211       1


Q ss_pred             CCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChh
Q 025775          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (248)
Q Consensus       103 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~  150 (248)
                      ....++++   ++|- ..+.  .+.+++...+   ++-.+++..|...
T Consensus        97 ~~~~~~~v---gLHa-CG~L--s~~~l~~~~~---~~~~~l~~vpCCy  135 (141)
T PF13679_consen   97 SDPPDILV---GLHA-CGDL--SDRALRLFIR---PNARFLVLVPCCY  135 (141)
T ss_pred             cCCCeEEE---Eeec-ccch--HHHHHHHHHH---cCCCEEEEcCCcc
Confidence            34456665   4553 2222  3344444443   6666777667653

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.04  E-value=0.00015  Score=63.10  Aligned_cols=136  Identities=17%  Similarity=0.120  Sum_probs=90.9

Q ss_pred             hHhHHHHHHHHHh-cCCCCeEEEEcCCCCccHhHHHHcCC---------------------------------C------
Q 025775           16 LYEFAKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETALI---------------------------------A------   55 (248)
Q Consensus        16 ~~~~~~~~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~---------------------------------~------   55 (248)
                      ++.-+...++... -.++..++|.-||+|.++...+....                                 +      
T Consensus       175 LketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~  254 (381)
T COG0116         175 LKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKEL  254 (381)
T ss_pred             chHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCcc
Confidence            4444444444433 23567899999999998866544321                                 1      


Q ss_pred             -eEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHH----HHHHHHH
Q 025775           56 -NYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEE----RARRLLQ  130 (248)
Q Consensus        56 -~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~----~~~~~l~  130 (248)
                       .++|+|+++.+++.|+......+....+.|.++|+....-      +...+|+|+|+--...=+.+..    -...+.+
T Consensus       255 ~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~------~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~  328 (381)
T COG0116         255 PIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKE------PLEEYGVVISNPPYGERLGSEALVAKLYREFGR  328 (381)
T ss_pred             ceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCC------CCCcCCEEEeCCCcchhcCChhhHHHHHHHHHH
Confidence             3779999999999999999888877789999999976432      2268999999642111112222    2345666


Q ss_pred             HHhccccCCcEEEEEecChhHHHHHHH
Q 025775          131 NVSSLLKPGGYFLGITPDSSTIWAKYQ  157 (248)
Q Consensus       131 ~~~~~LkpgG~~i~~~~~~~~~~~~~~  157 (248)
                      .+++.++.-+.+++++...-.....++
T Consensus       329 ~lk~~~~~ws~~v~tt~e~~~~~~~~r  355 (381)
T COG0116         329 TLKRLLAGWSRYVFTTSEDLLFCLGLR  355 (381)
T ss_pred             HHHHHhcCCceEEEEccHHHHHHHhhh
Confidence            777888888888888665544443333

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=97.96  E-value=1.1e-05  Score=65.22  Aligned_cols=110  Identities=12%  Similarity=0.074  Sum_probs=76.9

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHH-HhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTW-ENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      .+.+|||-|.|-|..+...+..+..+|..++.+++.|+.|.-.- ...-....++.+.+|+.+  +-+.+  .+.+||+|
T Consensus       134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e--~V~~~--~D~sfDaI  209 (287)
T COG2521         134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYE--VVKDF--DDESFDAI  209 (287)
T ss_pred             cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHH--HHhcC--CccccceE
Confidence            68999999999999999888888889999999999999876421 000011136888998743  21112  47789999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +-.- .....-+.--..++-.+++++|+|||.++=-
T Consensus       210 iHDP-PRfS~AgeLYseefY~El~RiLkrgGrlFHY  244 (287)
T COG2521         210 IHDP-PRFSLAGELYSEEFYRELYRILKRGGRLFHY  244 (287)
T ss_pred             eeCC-CccchhhhHhHHHHHHHHHHHcCcCCcEEEE
Confidence            6421 0001112223678999999999999998743

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.95  E-value=0.00015  Score=58.46  Aligned_cols=112  Identities=11%  Similarity=0.001  Sum_probs=75.0

Q ss_pred             EEEEcCCCCccHhHHHHcCC-CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEecc
Q 025775           35 VCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQ  113 (248)
Q Consensus        35 VLDlGcG~G~~~~~l~~~~~-~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~  113 (248)
                      |+||||-.|.....+...+. ..++++|+++..++.|++.....+...++.+..+|-.+. +.     +....|.|+..+
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~-l~-----~~e~~d~ivIAG   74 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV-LK-----PGEDVDTIVIAG   74 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--------GGG---EEEEEE
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc-cC-----CCCCCCEEEEec
Confidence            68999999999999988765 479999999999999999998877777799999985331 21     122378776655


Q ss_pred             chhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh-hHHHHHHHH
Q 025775          114 HLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS-STIWAKYQK  158 (248)
Q Consensus       114 ~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~-~~~~~~~~~  158 (248)
                      +      ....+..++++....++....|++.-.+. ..+++-+.+
T Consensus        75 M------GG~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~  114 (205)
T PF04816_consen   75 M------GGELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYE  114 (205)
T ss_dssp             E-------HHHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHH
T ss_pred             C------CHHHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHH
Confidence            2      34457788888888887776777764443 444444443

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.93  E-value=6.9e-05  Score=60.88  Aligned_cols=102  Identities=16%  Similarity=0.062  Sum_probs=73.3

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      .++..+||+|+.||+++..+.+.+.+.|+|+|.....+..-   ++...  .-+.+...|+.......    -.+..|++
T Consensus        78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~k---LR~d~--rV~~~E~tN~r~l~~~~----~~~~~d~~  148 (245)
T COG1189          78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWK---LRNDP--RVIVLERTNVRYLTPED----FTEKPDLI  148 (245)
T ss_pred             CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHh---HhcCC--cEEEEecCChhhCCHHH----cccCCCeE
Confidence            38899999999999999999999999999999998776532   22211  11344455554433211    13478899


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      +|--++..       +..++..+..+++|+|.++..+-
T Consensus       149 v~DvSFIS-------L~~iLp~l~~l~~~~~~~v~LvK  179 (245)
T COG1189         149 VIDVSFIS-------LKLILPALLLLLKDGGDLVLLVK  179 (245)
T ss_pred             EEEeehhh-------HHHHHHHHHHhcCCCceEEEEec
Confidence            88775543       77889999999999998887633

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.87  E-value=0.00024  Score=59.63  Aligned_cols=109  Identities=15%  Similarity=0.071  Sum_probs=64.2

Q ss_pred             CCeEEEEcCCCCccHhHHHHc--C-CCeEEEEeCChHHHHHHHHHHH-hcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775           32 YVTVCDLYCGAGVDVDKWETA--L-IANYIGIDVATSGIGEARDTWE-NQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        32 ~~~VLDlGcG~G~~~~~l~~~--~-~~~v~giDis~~~l~~a~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      ..+|+=||||.=-++.-+...  . ...++++|+++.+++.+++... ..+...++.|+.+|..+...      .-..||
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~------dl~~~D  194 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTY------DLKEYD  194 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-G------G----S
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccc------ccccCC
Confidence            359999999986655544432  2 3479999999999999988766 22334458999999865432      235899


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      +|+......   .+.+.-.+++.++.+.++||+.++.-..++
T Consensus       195 vV~lAalVg---~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~G  233 (276)
T PF03059_consen  195 VVFLAALVG---MDAEPKEEILEHLAKHMAPGARLVVRSAHG  233 (276)
T ss_dssp             EEEE-TT-S-------SHHHHHHHHHHHS-TTSEEEEEE--G
T ss_pred             EEEEhhhcc---cccchHHHHHHHHHhhCCCCcEEEEecchh
Confidence            997655322   245567889999999999999999875444

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=97.85  E-value=0.00014  Score=54.75  Aligned_cols=87  Identities=16%  Similarity=0.197  Sum_probs=58.8

Q ss_pred             eEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEeccchhhh-------cCCHHHHHHH
Q 025775           56 NYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMC-------FETEERARRL  128 (248)
Q Consensus        56 ~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~-------~~~~~~~~~~  128 (248)
                      +|+|+||.+++|+.++++....+...++.++..+-..  +...++  .++.|+|+-  .+.|.       ....+....+
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~--l~~~i~--~~~v~~~iF--NLGYLPggDk~i~T~~~TTl~A   74 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHEN--LDEYIP--EGPVDAAIF--NLGYLPGGDKSITTKPETTLKA   74 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGG--GGGT----S--EEEEEE--EESB-CTS-TTSB--HHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHH--HHhhCc--cCCcCEEEE--ECCcCCCCCCCCCcCcHHHHHH
Confidence            5899999999999999999887655578999887643  433332  258998854  33332       3335567889


Q ss_pred             HHHHhccccCCcEEEEEecC
Q 025775          129 LQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       129 l~~~~~~LkpgG~~i~~~~~  148 (248)
                      ++.+.+.|+|||++.+..-.
T Consensus        75 l~~al~lL~~gG~i~iv~Y~   94 (140)
T PF06962_consen   75 LEAALELLKPGGIITIVVYP   94 (140)
T ss_dssp             HHHHHHHEEEEEEEEEEE--
T ss_pred             HHHHHHhhccCCEEEEEEeC
Confidence            99999999999999988443

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.85  E-value=6.7e-05  Score=67.16  Aligned_cols=113  Identities=18%  Similarity=0.199  Sum_probs=77.8

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      ++.+|||+-||.|.++..++. ...+|+|+|+++++++.|++..+.++.. ++.|..+++.+...  ... ....+|.|+
T Consensus       293 ~~~~vlDlYCGvG~f~l~lA~-~~~~V~gvEi~~~aV~~A~~NA~~n~i~-N~~f~~~~ae~~~~--~~~-~~~~~d~Vv  367 (432)
T COG2265         293 GGERVLDLYCGVGTFGLPLAK-RVKKVHGVEISPEAVEAAQENAAANGID-NVEFIAGDAEEFTP--AWW-EGYKPDVVV  367 (432)
T ss_pred             CCCEEEEeccCCChhhhhhcc-cCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEeCCHHHHhh--hcc-ccCCCCEEE
Confidence            678999999999999999974 4559999999999999999988777643 38999998754222  111 135789996


Q ss_pred             eccchhhhcCCHHHHH-HHHHHHhccccCCcEEEEEecChhHHHHHHH
Q 025775          111 CFQHLQMCFETEERAR-RLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ  157 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~-~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~  157 (248)
                      ..--=       .-+. .+++.+. .++|-.+++++ .|...+.+.+.
T Consensus       368 vDPPR-------~G~~~~~lk~l~-~~~p~~IvYVS-CNP~TlaRDl~  406 (432)
T COG2265         368 VDPPR-------AGADREVLKQLA-KLKPKRIVYVS-CNPATLARDLA  406 (432)
T ss_pred             ECCCC-------CCCCHHHHHHHH-hcCCCcEEEEe-CCHHHHHHHHH
Confidence            53311       1122 4444444 45777777776 45556665554

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.84  E-value=0.00092  Score=56.13  Aligned_cols=88  Identities=13%  Similarity=0.052  Sum_probs=63.6

Q ss_pred             hHHHHHHHHHh-cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh
Q 025775           18 EFAKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE   96 (248)
Q Consensus        18 ~~~~~~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   96 (248)
                      ..+-..+++.. ..++..|||+|+|+|.++..++... ++++++|+++.+++..++++...   .+++++.+|+...+..
T Consensus        16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~---~~~~vi~~D~l~~~~~   91 (262)
T PF00398_consen   16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASN---PNVEVINGDFLKWDLY   91 (262)
T ss_dssp             HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTC---SSEEEEES-TTTSCGG
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhc---ccceeeecchhccccH
Confidence            34444444544 3478999999999999999998877 69999999999999988877632   2489999999876653


Q ss_pred             hhhcccCCceeEEEec
Q 025775           97 TQMQEKANQADLVCCF  112 (248)
Q Consensus        97 ~~~~~~~~~fD~V~~~  112 (248)
                      ..+   ......|+++
T Consensus        92 ~~~---~~~~~~vv~N  104 (262)
T PF00398_consen   92 DLL---KNQPLLVVGN  104 (262)
T ss_dssp             GHC---SSSEEEEEEE
T ss_pred             Hhh---cCCceEEEEE
Confidence            211   2344555554

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.83  E-value=0.00079  Score=53.43  Aligned_cols=115  Identities=17%  Similarity=0.138  Sum_probs=80.9

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      .++.+||=||..+|...+....- +.+.+.|++.|+.+....-.......   ++--+..|+..+.-...+   -+..|+
T Consensus        75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~---Ni~PIL~DA~~P~~Y~~~---Ve~VDv  148 (231)
T COG1889          75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRP---NIIPILEDARKPEKYRHL---VEKVDV  148 (231)
T ss_pred             CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCC---CceeeecccCCcHHhhhh---cccccE
Confidence            48999999999999999888775 44679999999998766544444332   255677887664432222   356899


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE--------ecChhHHHHHH
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI--------TPDSSTIWAKY  156 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~--------~~~~~~~~~~~  156 (248)
                      |.+--+      ...+.+=+..|+...|++||++++.        +-++..+.+.-
T Consensus       149 iy~DVA------Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~e  198 (231)
T COG1889         149 IYQDVA------QPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDE  198 (231)
T ss_pred             EEEecC------CchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHH
Confidence            976442      2445777889999999999987766        34445555533

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=97.76  E-value=0.0006  Score=57.52  Aligned_cols=108  Identities=15%  Similarity=0.146  Sum_probs=65.7

Q ss_pred             CCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHh--cCCCceE-EEEEcCCCCC---------------
Q 025775           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN--QRKNFIA-EFFEADPCAE---------------   93 (248)
Q Consensus        32 ~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~--~~~~~~~-~~~~~d~~~~---------------   93 (248)
                      ..+||-.|||.|+++..++..++ .+-|=+.|--|+-...-.+..  ......+ .|++.-....               
T Consensus       151 ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~  229 (369)
T KOG2798|consen  151 KIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH  229 (369)
T ss_pred             CceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence            56899999999999999988877 566778887777543322211  0000001 1121111100               


Q ss_pred             ----------------chhhhhc--ccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEE
Q 025775           94 ----------------NFETQMQ--EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLG  144 (248)
Q Consensus        94 ----------------~~~~~~~--~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~  144 (248)
                                      +|.+...  ...+.||+|+.-+    ..++....-+.+..|.+.|+|||+.+=
T Consensus       230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcf----FIDTa~NileYi~tI~~iLk~GGvWiN  294 (369)
T KOG2798|consen  230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCF----FIDTAHNILEYIDTIYKILKPGGVWIN  294 (369)
T ss_pred             ccccCCCCCCccccccceeEEecCcCCCCccceEEEEE----EeechHHHHHHHHHHHHhccCCcEEEe
Confidence                            0111110  1235699875544    456788888999999999999998873

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=97.71  E-value=0.00098  Score=58.41  Aligned_cols=121  Identities=17%  Similarity=0.163  Sum_probs=80.7

Q ss_pred             HHHHHHhcC--CCCeEEEEcCCCCccHhHHHHcC---CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh
Q 025775           22 TALIKIYSH--PYVTVCDLYCGAGVDVDKWETAL---IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE   96 (248)
Q Consensus        22 ~~li~~~~~--~~~~VLDlGcG~G~~~~~l~~~~---~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   96 (248)
                      +.+....+.  ||.+|||++++.|+=+..++...   ...|+++|+++.-+...+.+....+... +...+.|.....-.
T Consensus       145 S~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d~~~~~~~  223 (355)
T COG0144         145 SQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKDARRLAEL  223 (355)
T ss_pred             HHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEeccccccccc
Confidence            444444433  88999999999999888777652   2357999999999988888877766422 56777776432210


Q ss_pred             hhhcccCCceeEEEecc------chh------hhcCCH-------HHHHHHHHHHhccccCCcEEEEEec
Q 025775           97 TQMQEKANQADLVCCFQ------HLQ------MCFETE-------ERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus        97 ~~~~~~~~~fD~V~~~~------~l~------~~~~~~-------~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                        .. ..++||.|.+-.      +++      +. .+.       .-..+++....+.|||||.++-++.
T Consensus       224 --~~-~~~~fD~iLlDaPCSg~G~irr~Pd~~~~-~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTC  289 (355)
T COG0144         224 --LP-GGEKFDRILLDAPCSGTGVIRRDPDVKWR-RTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTC  289 (355)
T ss_pred             --cc-ccCcCcEEEECCCCCCCcccccCcccccc-CCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence              00 123699987632      221      10 111       2246789999999999999998844

>KOG2730 consensus Methylase [General function prediction only]

Probab=97.70  E-value=4.9e-05  Score=60.84  Aligned_cols=102  Identities=19%  Similarity=0.162  Sum_probs=69.5

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      ....|+|..||.|+.+..++.... .|+++|++|.-|..|+...+--+...++.|+++|..+  ....++-....+|+|.
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld--~~~~lq~~K~~~~~vf  170 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLD--LASKLKADKIKYDCVF  170 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHH--HHHHHhhhhheeeeee
Confidence            456799999999999988877766 8999999999999999888777777789999999854  3323322233466776


Q ss_pred             eccchhhhcCCHHHHHHHHHHHhccccCC
Q 025775          111 CFQHLQMCFETEERARRLLQNVSSLLKPG  139 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~~~~~Lkpg  139 (248)
                      .+...    ...+....-+-.+...+.|.
T Consensus       171 ~sppw----ggp~y~~~~~~DL~~~~~p~  195 (263)
T KOG2730|consen  171 LSPPW----GGPSYLRADVYDLETHLKPM  195 (263)
T ss_pred             cCCCC----CCcchhhhhhhhhhhhcchh
Confidence            54422    22333333344444455544

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.70  E-value=0.00021  Score=61.48  Aligned_cols=94  Identities=14%  Similarity=0.038  Sum_probs=61.6

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      ..++.++|||||++|+++..+...+. .|+++|..+-.     ......   .++...+.|......      ..+.+|.
T Consensus       209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~-----~~L~~~---~~V~h~~~d~fr~~p------~~~~vDw  273 (357)
T PRK11760        209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMA-----QSLMDT---GQVEHLRADGFKFRP------PRKNVDW  273 (357)
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhcC-----HhhhCC---CCEEEEeccCcccCC------CCCCCCE
Confidence            35899999999999999999998887 99999955421     122222   248888888755321      1567999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCC--cEEEEE
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPG--GYFLGI  145 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkpg--G~~i~~  145 (248)
                      ++|-.+..        ...+.+-+.+.|..|  ..+|++
T Consensus       274 vVcDmve~--------P~rva~lm~~Wl~~g~cr~aIfn  304 (357)
T PRK11760        274 LVCDMVEK--------PARVAELMAQWLVNGWCREAIFN  304 (357)
T ss_pred             EEEecccC--------HHHHHHHHHHHHhcCcccEEEEE
Confidence            99977422        233444444555443  345555

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=97.64  E-value=1.6e-05  Score=63.01  Aligned_cols=94  Identities=19%  Similarity=0.312  Sum_probs=65.6

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      .+.++||||.|.|..+..++. .+.+|.++++|..|+...+.+    +  +++ +-..+-.+         .+-++|+|+
T Consensus       112 ~~~~lLDlGAGdGeit~~m~p-~feevyATElS~tMr~rL~kk----~--ynV-l~~~ew~~---------t~~k~dli~  174 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEITLRMAP-TFEEVYATELSWTMRDRLKKK----N--YNV-LTEIEWLQ---------TDVKLDLIL  174 (288)
T ss_pred             CCeeEEeccCCCcchhhhhcc-hHHHHHHHHhhHHHHHHHhhc----C--Cce-eeehhhhh---------cCceeehHH
Confidence            457999999999998877643 344799999999998876543    1  111 11111111         234799999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHhccccC-CcEEEEE
Q 025775          111 CFQHLQMCFETEERARRLLQNVSSLLKP-GGYFLGI  145 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~~~~~Lkp-gG~~i~~  145 (248)
                      |...+.-++.    .-++++.++.+|+| +|..++.
T Consensus       175 clNlLDRc~~----p~kLL~Di~~vl~psngrviva  206 (288)
T KOG3987|consen  175 CLNLLDRCFD----PFKLLEDIHLVLAPSNGRVIVA  206 (288)
T ss_pred             HHHHHHhhcC----hHHHHHHHHHHhccCCCcEEEE
Confidence            9887765444    56789999999999 8887776

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=97.61  E-value=0.00013  Score=52.36  Aligned_cols=100  Identities=18%  Similarity=0.140  Sum_probs=43.2

Q ss_pred             EEEcCCCCccHhHHHHc----CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEe
Q 025775           36 CDLYCGAGVDVDKWETA----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (248)
Q Consensus        36 LDlGcG~G~~~~~l~~~----~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~  111 (248)
                      ||+|+..|..+..++..    ...+++++|..+. .+.+.+..+..+...++.+++++..+  ..+.+  ..+++|+|+.
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~--~l~~~--~~~~~dli~i   75 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPD--FLPSL--PDGPIDLIFI   75 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-BTEEEEES-THH--HHHHH--HH--EEEEEE
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHH--HHHHc--CCCCEEEEEE
Confidence            68999999888777654    1137999999995 22222222222223358999998733  22222  2478999987


Q ss_pred             ccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       112 ~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      -.. |    ..+.....++.+.+.|+|||++++.
T Consensus        76 Dg~-H----~~~~~~~dl~~~~~~l~~ggviv~d  104 (106)
T PF13578_consen   76 DGD-H----SYEAVLRDLENALPRLAPGGVIVFD  104 (106)
T ss_dssp             ES--------HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CCC-C----CHHHHHHHHHHHHHHcCCCeEEEEe
Confidence            652 2    2355777899999999999999874

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=97.59  E-value=0.0005  Score=60.22  Aligned_cols=57  Identities=25%  Similarity=0.366  Sum_probs=43.2

Q ss_pred             CeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCC
Q 025775           33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPC   91 (248)
Q Consensus        33 ~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~   91 (248)
                      ..|||+-||.|.++..++.. ..+|+|+|+++++++.|+.....++. .+++|+.+++.
T Consensus       198 ~~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i-~n~~f~~~~~~  254 (352)
T PF05958_consen  198 GDVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGI-DNVEFIRGDAE  254 (352)
T ss_dssp             TEEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SH
T ss_pred             CcEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCC-CcceEEEeecc
Confidence            48999999999999998654 45999999999999999988776553 35889887763

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.59  E-value=0.00028  Score=55.63  Aligned_cols=106  Identities=20%  Similarity=0.091  Sum_probs=72.8

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      .+.+|||+|+|+|--+...+..+.+.|+..|+.|..+...+-....++  ..+.+...|+..         .+..||++.
T Consensus        79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~ang--v~i~~~~~d~~g---------~~~~~Dl~L  147 (218)
T COG3897          79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANG--VSILFTHADLIG---------SPPAFDLLL  147 (218)
T ss_pred             ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhcc--ceeEEeeccccC---------CCcceeEEE
Confidence            589999999999987777777788899999999877666554444443  447888888744         256899998


Q ss_pred             eccchhhhcCCHHHHHHHHHHHhccccCCc-EEEEEecChhHH
Q 025775          111 CFQHLQMCFETEERARRLLQNVSSLLKPGG-YFLGITPDSSTI  152 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG-~~i~~~~~~~~~  152 (248)
                      ....+    .+......++. ....|+..| .+++..|....+
T Consensus       148 agDlf----y~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R~~l  185 (218)
T COG3897         148 AGDLF----YNHTEADRLIP-WKDRLAEAGAAVLVGDPGRAYL  185 (218)
T ss_pred             eecee----cCchHHHHHHH-HHHHHHhCCCEEEEeCCCCCCC
Confidence            87743    34555667777 555554444 455445554333

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.51  E-value=0.0036  Score=50.46  Aligned_cols=120  Identities=10%  Similarity=-0.004  Sum_probs=85.6

Q ss_pred             HHHhcCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccC
Q 025775           25 IKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA  103 (248)
Q Consensus        25 i~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  103 (248)
                      +..+++.+.+++||||-.|.+...+... ....+++.|+++..++.|.+.+...+...++....+|... .+.     .+
T Consensus        10 va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~-~l~-----~~   83 (226)
T COG2384          10 VANLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLA-VLE-----LE   83 (226)
T ss_pred             HHHHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcc-ccC-----cc
Confidence            4556667788999999999988888776 4568999999999999999999888776667777777632 221     34


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh--hHHHHHHH
Q 025775          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS--STIWAKYQ  157 (248)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~--~~~~~~~~  157 (248)
                      ..+|+|+..+.      ....+..++++-...|+.=-.+++. |+.  ..+++-+.
T Consensus        84 d~~d~ivIAGM------GG~lI~~ILee~~~~l~~~~rlILQ-Pn~~~~~LR~~L~  132 (226)
T COG2384          84 DEIDVIVIAGM------GGTLIREILEEGKEKLKGVERLILQ-PNIHTYELREWLS  132 (226)
T ss_pred             CCcCEEEEeCC------cHHHHHHHHHHhhhhhcCcceEEEC-CCCCHHHHHHHHH
Confidence            57898876552      3444777888877777755456554 544  44444443

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.48  E-value=0.00039  Score=52.50  Aligned_cols=58  Identities=9%  Similarity=-0.024  Sum_probs=45.6

Q ss_pred             eEEEEcCCCCccHhHHHHcCC-CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC
Q 025775           34 TVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA   92 (248)
Q Consensus        34 ~VLDlGcG~G~~~~~l~~~~~-~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~   92 (248)
                      .|||+|||.|..+..++.... .+++++|+++.+++.+++.+..++.. ++.+++..+.+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeC
Confidence            489999999999888877654 38999999999999998887765432 37777777644

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=97.47  E-value=0.01  Score=48.66  Aligned_cols=108  Identities=20%  Similarity=0.181  Sum_probs=69.8

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc-----CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCc
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~-----~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (248)
                      .+...+|+|+|+..-+..+...     ...+++.+|+|...++.........-....+.-+++|... .+.    ..++.
T Consensus        78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~-~La----~~~~~  152 (321)
T COG4301          78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYEL-ALA----ELPRG  152 (321)
T ss_pred             CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHH-HHh----cccCC
Confidence            4788999999998766555443     2358999999999997654433332223345556666421 121    11222


Q ss_pred             -eeE-EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          106 -ADL-VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       106 -fD~-V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                       --+ ++...++.+  .+++....++.++...|+||-+|++.
T Consensus       153 ~~Rl~~flGStlGN--~tp~e~~~Fl~~l~~a~~pGd~~LlG  192 (321)
T COG4301         153 GRRLFVFLGSTLGN--LTPGECAVFLTQLRGALRPGDYFLLG  192 (321)
T ss_pred             CeEEEEEecccccC--CChHHHHHHHHHHHhcCCCcceEEEe
Confidence             222 233344554  56788999999999999999999876

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.47  E-value=0.0012  Score=53.36  Aligned_cols=98  Identities=20%  Similarity=0.121  Sum_probs=66.8

Q ss_pred             CCeEEEEcCCCCccHhHHH-HcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCc-eeEE
Q 025775           32 YVTVCDLYCGAGVDVDKWE-TALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ-ADLV  109 (248)
Q Consensus        32 ~~~VLDlGcG~G~~~~~l~-~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-fD~V  109 (248)
                      +.+++|||+|.|--...++ ..+..+++-+|....-+..-+.-....+. .++.++++.+.+  +.     .... ||+|
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L-~nv~i~~~RaE~--~~-----~~~~~~D~v  139 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL-ENVEIVHGRAEE--FG-----QEKKQYDVV  139 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC-CCeEEehhhHhh--cc-----cccccCcEE
Confidence            5899999999998777765 23444799999988765554444333331 237788877643  31     1223 9999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      ++-.        ...+..+++-+...+++||.+++.
T Consensus       140 tsRA--------va~L~~l~e~~~pllk~~g~~~~~  167 (215)
T COG0357         140 TSRA--------VASLNVLLELCLPLLKVGGGFLAY  167 (215)
T ss_pred             Eeeh--------ccchHHHHHHHHHhcccCCcchhh
Confidence            8865        223677888889999999987644

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=97.43  E-value=0.00038  Score=55.80  Aligned_cols=108  Identities=18%  Similarity=0.190  Sum_probs=56.7

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc-----CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhccc--C
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK--A  103 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~-----~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~  103 (248)
                      ++..|+|+|.-.|+.+..+++.     +.++|+|+||+.......  ..+.+....+++++++|..+......+...  .
T Consensus        32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~  109 (206)
T PF04989_consen   32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIESHPMSPRITFIQGDSIDPEIVDQVRELASP  109 (206)
T ss_dssp             --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTEEEEES-SSSTHHHHTSGSS---
T ss_pred             CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhhccccCceEEEECCCCCHHHHHHHHHhhcc
Confidence            4688999999999988877642     446999999965443221  222222234599999999876554333222  2


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      ....+|+--. -|.    .+.....++....++.+|+++++.
T Consensus       110 ~~~vlVilDs-~H~----~~hvl~eL~~y~plv~~G~Y~IVe  146 (206)
T PF04989_consen  110 PHPVLVILDS-SHT----HEHVLAELEAYAPLVSPGSYLIVE  146 (206)
T ss_dssp             -SSEEEEESS---------SSHHHHHHHHHHT--TT-EEEET
T ss_pred             CCceEEEECC-Ccc----HHHHHHHHHHhCccCCCCCEEEEE
Confidence            3344554332 221    223456677799999999999875

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=97.41  E-value=0.0013  Score=56.21  Aligned_cols=85  Identities=15%  Similarity=0.094  Sum_probs=60.4

Q ss_pred             HHHHh-cCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc
Q 025775           24 LIKIY-SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE  101 (248)
Q Consensus        24 li~~~-~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  101 (248)
                      +++.+ ..++..++|.-||.|+++..++.. +.+.|+|+|.++.+++.|+++....  ..++.+++++..+  +...+..
T Consensus        12 vl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~--l~~~l~~   87 (305)
T TIGR00006        12 VVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFAN--FFEHLDE   87 (305)
T ss_pred             HHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHH--HHHHHHh
Confidence            34444 347889999999999999998876 3479999999999999999887643  2358888888654  2222211


Q ss_pred             -cCCceeEEEec
Q 025775          102 -KANQADLVCCF  112 (248)
Q Consensus       102 -~~~~fD~V~~~  112 (248)
                       ...++|.|+..
T Consensus        88 ~~~~~vDgIl~D   99 (305)
T TIGR00006        88 LLVTKIDGILVD   99 (305)
T ss_pred             cCCCcccEEEEe
Confidence             22457777653

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=97.37  E-value=0.0043  Score=49.81  Aligned_cols=113  Identities=13%  Similarity=0.101  Sum_probs=63.8

Q ss_pred             CCCeEEEEcCCCCccHhHHH---HcCCCeEEEEeCChHHHHHHHHHHH--------------------------------
Q 025775           31 PYVTVCDLYCGAGVDVDKWE---TALIANYIGIDVATSGIGEARDTWE--------------------------------   75 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~---~~~~~~v~giDis~~~l~~a~~~~~--------------------------------   75 (248)
                      .+.+++|.+||.|.++--+.   ......|.|.||++++++.|++...                                
T Consensus        51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s  130 (246)
T PF11599_consen   51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES  130 (246)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred             CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence            45689999999998775442   2255689999999999998876221                                


Q ss_pred             ---------hcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEeccc----hhhhc-CCHHHHHHHHHHHhccccCCcE
Q 025775           76 ---------NQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQH----LQMCF-ETEERARRLLQNVSSLLKPGGY  141 (248)
Q Consensus        76 ---------~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~----l~~~~-~~~~~~~~~l~~~~~~LkpgG~  141 (248)
                               ..+-.......++|+++........ .....|+|+.-.-    .+|-= ...+....++..++.+|-++++
T Consensus       131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~-~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sV  209 (246)
T PF11599_consen  131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLD-AGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSV  209 (246)
T ss_dssp             HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHH-TT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-E
T ss_pred             HHHHHHHHHhcCCCCchhheeecccCCchhhhhc-cCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcE
Confidence                     0111234678899998855433331 3445699977321    12211 1244678999999999955555


Q ss_pred             EEE
Q 025775          142 FLG  144 (248)
Q Consensus       142 ~i~  144 (248)
                      +.+
T Consensus       210 V~v  212 (246)
T PF11599_consen  210 VAV  212 (246)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            555

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.34  E-value=0.0023  Score=54.36  Aligned_cols=98  Identities=13%  Similarity=0.102  Sum_probs=51.4

Q ss_pred             hHHHHHHHHHh--cCCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhc-CCCceEEEEEcCCCC
Q 025775           18 EFAKTALIKIY--SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQ-RKNFIAEFFEADPCA   92 (248)
Q Consensus        18 ~~~~~~li~~~--~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~-~~~~~~~~~~~d~~~   92 (248)
                      -|+...|....  .+...++||||||....-..+...  ++ +++|+||++.+++.|++....+ +...++.++...-..
T Consensus        87 ~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~  165 (299)
T PF05971_consen   87 HWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESARENVERNPNLESRIELRKQKNPD  165 (299)
T ss_dssp             HHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-
T ss_pred             HHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCcc
Confidence            55555443221  112568999999987543333222  55 9999999999999999988877 556667777554222


Q ss_pred             CchhhhhcccCCceeEEEeccchhh
Q 025775           93 ENFETQMQEKANQADLVCCFQHLQM  117 (248)
Q Consensus        93 ~~~~~~~~~~~~~fD~V~~~~~l~~  117 (248)
                       .+...+......||..+|+--+|.
T Consensus       166 -~i~~~i~~~~e~~dftmCNPPFy~  189 (299)
T PF05971_consen  166 -NIFDGIIQPNERFDFTMCNPPFYS  189 (299)
T ss_dssp             -SSTTTSTT--S-EEEEEE-----S
T ss_pred             -ccchhhhcccceeeEEecCCcccc
Confidence             222222223468999999877664

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=97.32  E-value=0.00081  Score=57.10  Aligned_cols=113  Identities=19%  Similarity=0.208  Sum_probs=76.2

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      .++..|||+++|.|+=+..++..  +.+.+++.|+++.-+...+.+....+. ..+.....|.......  .  ....||
T Consensus        84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~-~~v~~~~~D~~~~~~~--~--~~~~fd  158 (283)
T PF01189_consen   84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV-FNVIVINADARKLDPK--K--PESKFD  158 (283)
T ss_dssp             TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT--SSEEEEESHHHHHHHH--H--HTTTEE
T ss_pred             cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC-ceEEEEeecccccccc--c--cccccc
Confidence            37889999999999988777665  356999999999999988887766552 2355555665432111  1  234699


Q ss_pred             EEEecc------chhh------hcC--C----HHHHHHHHHHHhccc----cCCcEEEEEec
Q 025775          108 LVCCFQ------HLQM------CFE--T----EERARRLLQNVSSLL----KPGGYFLGITP  147 (248)
Q Consensus       108 ~V~~~~------~l~~------~~~--~----~~~~~~~l~~~~~~L----kpgG~~i~~~~  147 (248)
                      .|.+-.      .+..      ...  .    .....+++.++.+.+    +|||+++-++.
T Consensus       159 ~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC  220 (283)
T PF01189_consen  159 RVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC  220 (283)
T ss_dssp             EEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred             hhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence            997622      1111      000  0    122467899999999    99999988744

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.30  E-value=0.00049  Score=52.62  Aligned_cols=119  Identities=14%  Similarity=0.087  Sum_probs=75.9

Q ss_pred             CCCeEEEEcCCCCccHhHHHH--cCCCeEEEEeCChHHHHHHHHHHHhcC--CCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           31 PYVTVCDLYCGAGVDVDKWET--ALIANYIGIDVATSGIGEARDTWENQR--KNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~--~~~~~v~giDis~~~l~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      .+.+|||+|.|--+++..+..  .+...|.-+|-+..+++..++....+.  ...++..+..+.-...    ......+|
T Consensus        29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aq----sq~eq~tF  104 (201)
T KOG3201|consen   29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQ----SQQEQHTF  104 (201)
T ss_pred             hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhH----HHHhhCcc
Confidence            467899999885433433332  256689999999999988876543321  1111212222111111    11135689


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHH
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ  157 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~  157 (248)
                      |+|+|..++..    .+....++..|..+|+|.|..++..|....-..++.
T Consensus       105 DiIlaADClFf----dE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~  151 (201)
T KOG3201|consen  105 DIILAADCLFF----DEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFL  151 (201)
T ss_pred             cEEEeccchhH----HHHHHHHHHHHHHHhCcccceeEecCcccchHHHHH
Confidence            99999886654    666788999999999999998888776643344443

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=97.21  E-value=0.0031  Score=50.61  Aligned_cols=107  Identities=20%  Similarity=0.055  Sum_probs=73.3

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      +.+|.+||++|-|-|-...++...++..-+-++..+..++..+...-...  .++....+--.+  ....+  ++++||-
T Consensus        99 ~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek--~nViil~g~WeD--vl~~L--~d~~FDG  172 (271)
T KOG1709|consen   99 STKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREK--ENVIILEGRWED--VLNTL--PDKHFDG  172 (271)
T ss_pred             hhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccc--cceEEEecchHh--hhccc--cccCcce
Confidence            45899999999999988888877777788889999999887765432221  224444332211  11112  4678999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      |.--..    -+.-+++..+.+.+.++|||+|+|-..
T Consensus       173 I~yDTy----~e~yEdl~~~hqh~~rLLkP~gv~Syf  205 (271)
T KOG1709|consen  173 IYYDTY----SELYEDLRHFHQHVVRLLKPEGVFSYF  205 (271)
T ss_pred             eEeech----hhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence            854321    133567888899999999999988654

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=97.20  E-value=0.018  Score=48.63  Aligned_cols=48  Identities=25%  Similarity=0.270  Sum_probs=42.0

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcC--CCeEEEEeCChHHHHHHHHHHHh
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWEN   76 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~--~~~v~giDis~~~l~~a~~~~~~   76 (248)
                      ..|+...+|..-|.|+++..++...  .++++|+|-++.+|+.|+++...
T Consensus        21 ~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~   70 (314)
T COG0275          21 PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKE   70 (314)
T ss_pred             cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhc
Confidence            3478999999999999999998874  36899999999999999998754

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=97.19  E-value=0.00065  Score=53.28  Aligned_cols=101  Identities=19%  Similarity=0.152  Sum_probs=71.8

Q ss_pred             CCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEe
Q 025775           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (248)
Q Consensus        32 ~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~  111 (248)
                      ...+.|+|.|+|-++. +++....+|++++.+|.-...|.+...-.+ ..+.+.+++|+.+.++        ...|+|+|
T Consensus        33 ~d~~~DLGaGsGiLs~-~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g-~~n~evv~gDA~~y~f--------e~ADvvic  102 (252)
T COG4076          33 EDTFADLGAGSGILSV-VAAHAAERVIAIEKDPKRARLAEENLHVPG-DVNWEVVVGDARDYDF--------ENADVVIC  102 (252)
T ss_pred             hhceeeccCCcchHHH-HHHhhhceEEEEecCcHHHHHhhhcCCCCC-CcceEEEecccccccc--------cccceeHH
Confidence            4789999999997544 444456799999999998888887643222 1347899999977665        35799988


Q ss_pred             ccchhhhcCCHHHHHHHHHHHhccccCCcEEEE
Q 025775          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLG  144 (248)
Q Consensus       112 ~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~  144 (248)
                      -+.=.  ..-.+....++..+.+.||-++.++=
T Consensus       103 EmlDT--aLi~E~qVpV~n~vleFLr~d~tiiP  133 (252)
T COG4076         103 EMLDT--ALIEEKQVPVINAVLEFLRYDPTIIP  133 (252)
T ss_pred             HHhhH--HhhcccccHHHHHHHHHhhcCCcccc
Confidence            65211  11234456677788889999998763

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=97.19  E-value=0.00073  Score=60.63  Aligned_cols=66  Identities=17%  Similarity=0.220  Sum_probs=51.2

Q ss_pred             HHHHHh--cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCC
Q 025775           23 ALIKIY--SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADP   90 (248)
Q Consensus        23 ~li~~~--~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~   90 (248)
                      .+|..+  ++.+..+||+.||||.....+++ +.+.|+|+++++++++.|+.....++ ..+++|+++-+
T Consensus       373 s~i~e~~~l~~~k~llDv~CGTG~iglala~-~~~~ViGvEi~~~aV~dA~~nA~~Ng-isNa~Fi~gqa  440 (534)
T KOG2187|consen  373 STIGEWAGLPADKTLLDVCCGTGTIGLALAR-GVKRVIGVEISPDAVEDAEKNAQING-ISNATFIVGQA  440 (534)
T ss_pred             HHHHHHhCCCCCcEEEEEeecCCceehhhhc-cccceeeeecChhhcchhhhcchhcC-ccceeeeecch
Confidence            334444  34678899999999988877744 66799999999999999998776655 24589999944

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=97.09  E-value=0.017  Score=50.28  Aligned_cols=114  Identities=13%  Similarity=0.098  Sum_probs=60.3

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc------------C-----CCeEEEEeCChHHHHHHHHHH-------HhcCCCceEE
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA------------L-----IANYIGIDVATSGIGEARDTW-------ENQRKNFIAE   84 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~------------~-----~~~v~giDis~~~l~~a~~~~-------~~~~~~~~~~   84 (248)
                      .+...+|+|+||..|..+..+...            +     .-+|.--|+-.+--...-+.+       ...+ ..=+.
T Consensus        14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~-~~f~~   92 (334)
T PF03492_consen   14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFR-NYFVS   92 (334)
T ss_dssp             TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTT-SEEEE
T ss_pred             CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCc-eEEEE
Confidence            335579999999999988766431            1     016777776554332221111       1111 00011


Q ss_pred             EEEcCCCCCchhhhhcccCCceeEEEeccchhhhcC------C-----------------------------HHHHHHHH
Q 025775           85 FFEADPCAENFETQMQEKANQADLVCCFQHLQMCFE------T-----------------------------EERARRLL  129 (248)
Q Consensus        85 ~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~------~-----------------------------~~~~~~~l  129 (248)
                      -+-+...+.-+      +.++.|++++..++||+=.      +                             ..++..+|
T Consensus        93 gvpgSFy~rLf------P~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL  166 (334)
T PF03492_consen   93 GVPGSFYGRLF------PSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFL  166 (334)
T ss_dssp             EEES-TTS--S-------TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHH
T ss_pred             ecCchhhhccC------CCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence            12222222112      5789999999999998611      0                             13456677


Q ss_pred             HHHhccccCCcEEEEEecCh
Q 025775          130 QNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       130 ~~~~~~LkpgG~~i~~~~~~  149 (248)
                      +.=.+-|+|||.++++++..
T Consensus       167 ~~Ra~ELv~GG~mvl~~~gr  186 (334)
T PF03492_consen  167 KARAEELVPGGRMVLTFLGR  186 (334)
T ss_dssp             HHHHHHEEEEEEEEEEEEE-
T ss_pred             HHhhheeccCcEEEEEEeec
Confidence            77788899999999996543

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.05  E-value=0.0026  Score=52.39  Aligned_cols=80  Identities=19%  Similarity=0.149  Sum_probs=54.7

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      +++..+|+|||||.=-++..|.... ...|+|+||+..+++....-....+.  .......|+....       +....|
T Consensus       103 ~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~--~~~~~v~Dl~~~~-------~~~~~D  173 (251)
T PF07091_consen  103 IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV--PHDARVRDLLSDP-------PKEPAD  173 (251)
T ss_dssp             S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT---CEEEEEE-TTTSH-------TTSEES
T ss_pred             CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC--CcceeEeeeeccC-------CCCCcc
Confidence            3467899999999887777776653 34999999999999988876655543  3556666876543       357899


Q ss_pred             EEEeccchhh
Q 025775          108 LVCCFQHLQM  117 (248)
Q Consensus       108 ~V~~~~~l~~  117 (248)
                      +....=.+|.
T Consensus       174 laLllK~lp~  183 (251)
T PF07091_consen  174 LALLLKTLPC  183 (251)
T ss_dssp             EEEEET-HHH
T ss_pred             hhhHHHHHHH
Confidence            9988777774

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=96.99  E-value=0.0036  Score=55.25  Aligned_cols=107  Identities=13%  Similarity=0.150  Sum_probs=73.1

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCc-eEEEEEcCCCCCchhhhhcccCCcee
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNF-IAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      .+.+|||.-+|+|.=+..++..  +...|+.-|+|+++++..+...+-++... ++...+.|+..     .+......||
T Consensus        49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~-----ll~~~~~~fD  123 (377)
T PF02005_consen   49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANV-----LLYSRQERFD  123 (377)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHH-----HHCHSTT-EE
T ss_pred             CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHH-----HhhhccccCC
Confidence            3568999999999877777766  45699999999999999998877666554 57788888633     1212467899


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChh
Q 025775          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (248)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~  150 (248)
                      +|=.        ++-.....++..+.+.++.||++.+|.-|..
T Consensus       124 ~IDl--------DPfGSp~pfldsA~~~v~~gGll~vTaTD~a  158 (377)
T PF02005_consen  124 VIDL--------DPFGSPAPFLDSALQAVKDGGLLCVTATDTA  158 (377)
T ss_dssp             EEEE----------SS--HHHHHHHHHHEEEEEEEEEEE--HH
T ss_pred             EEEe--------CCCCCccHhHHHHHHHhhcCCEEEEeccccc
Confidence            9933        3333456678888889999999999965553

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=96.90  E-value=0.015  Score=50.38  Aligned_cols=112  Identities=13%  Similarity=0.045  Sum_probs=76.4

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHH--HHh--cC--CCceEEEEEcCCCCCchhhhhcccC
Q 025775           31 PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDT--WEN--QR--KNFIAEFFEADPCAENFETQMQEKA  103 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~--~~~--~~--~~~~~~~~~~d~~~~~~~~~~~~~~  103 (248)
                      ...+||=+|-|-|-.+..+.+.+ ..+++-+|++|.|++.++..  ...  .+  ...++..+..|+.+  .   ++...
T Consensus       289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~--w---lr~a~  363 (508)
T COG4262         289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQ--W---LRTAA  363 (508)
T ss_pred             ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHH--H---HHhhc
Confidence            34579999999998888887775 78999999999999998832  111  11  13457888888754  2   22235


Q ss_pred             CceeEEEeccchhhhcC-CHHHHHHHHHHHhccccCCcEEEEEec
Q 025775          104 NQADLVCCFQHLQMCFE-TEERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       104 ~~fD~V~~~~~l~~~~~-~~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      ..||.|+...-=..... ..---.++-..+.+.|+++|.+++..-
T Consensus       364 ~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag  408 (508)
T COG4262         364 DMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG  408 (508)
T ss_pred             ccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence            68999987441110000 011235678889999999999998833

>PRK10742 putative methyltransferase; Provisional

Probab=96.76  E-value=0.012  Score=48.52  Aligned_cols=80  Identities=10%  Similarity=-0.015  Sum_probs=56.6

Q ss_pred             CCCC--eEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhc------CC--CceEEEEEcCCCCCchhhhh
Q 025775           30 HPYV--TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ------RK--NFIAEFFEADPCAENFETQM   99 (248)
Q Consensus        30 ~~~~--~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~------~~--~~~~~~~~~d~~~~~~~~~~   99 (248)
                      +++.  +|||+-+|.|.++..++..+. .|+++|-++.+....+......      +.  ..++.++++|..+  +   +
T Consensus        85 k~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~--~---L  158 (250)
T PRK10742         85 KGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT--A---L  158 (250)
T ss_pred             CCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHH--H---H
Confidence            4666  899999999999999999888 5999999999877665544331      11  1347778888633  2   2


Q ss_pred             cccCCceeEEEeccch
Q 025775          100 QEKANQADLVCCFQHL  115 (248)
Q Consensus       100 ~~~~~~fD~V~~~~~l  115 (248)
                      .....+||+|++--.+
T Consensus       159 ~~~~~~fDVVYlDPMf  174 (250)
T PRK10742        159 TDITPRPQVVYLDPMF  174 (250)
T ss_pred             hhCCCCCcEEEECCCC
Confidence            2123479999876533

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.75  E-value=0.00087  Score=50.90  Aligned_cols=56  Identities=23%  Similarity=0.308  Sum_probs=48.8

Q ss_pred             cCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHHHh
Q 025775          102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKN  159 (248)
Q Consensus       102 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~  159 (248)
                      .+++.|+|.+..++.+  .+.+....+++++++.|||||.+-+..|+...+...|...
T Consensus        44 ~dns~d~iyaeHvlEH--lt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~~   99 (185)
T COG4627          44 EDNSVDAIYAEHVLEH--LTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQHD   99 (185)
T ss_pred             CCcchHHHHHHHHHHH--HhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhhh
Confidence            4789999999888877  4567788999999999999999999999999888888753

>PRK11524 putative methyltransferase; Provisional

Probab=96.70  E-value=0.0057  Score=51.97  Aligned_cols=57  Identities=18%  Similarity=0.126  Sum_probs=46.9

Q ss_pred             HHHHHHHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHh
Q 025775           19 FAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN   76 (248)
Q Consensus        19 ~~~~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~   76 (248)
                      -+-..+|..+..+|+.|||.-||+|..+......+- +++|+|++++.++.|++|+..
T Consensus       196 ~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        196 ALLKRIILASSNPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             HHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence            344567778888999999999999987666555444 899999999999999999754

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=96.65  E-value=0.017  Score=52.85  Aligned_cols=118  Identities=19%  Similarity=0.194  Sum_probs=74.6

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc---C--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCc
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA---L--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~---~--~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (248)
                      +..+|+|.+||+|+++......   .  ...+.|.++++.....|+...--++....+....+|....+.... ....++
T Consensus       186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~-~~~~~~  264 (489)
T COG0286         186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDD-KDDKGK  264 (489)
T ss_pred             CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccc-cCCccc
Confidence            6679999999999887655432   1  246999999999999988866555532234455555444332210 112467


Q ss_pred             eeEEEeccchh---h-----------------hcCCHHHH-HHHHHHHhccccCCcEEEEEecCh
Q 025775          106 ADLVCCFQHLQ---M-----------------CFETEERA-RRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       106 fD~V~~~~~l~---~-----------------~~~~~~~~-~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      ||.|+++--.-   +                 .+.+.... ..+++.+...|+|||...+..|++
T Consensus       265 ~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~g  329 (489)
T COG0286         265 FDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDG  329 (489)
T ss_pred             eeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCC
Confidence            99887743211   1                 01111222 678999999999999666666655

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=96.61  E-value=0.057  Score=47.71  Aligned_cols=48  Identities=15%  Similarity=0.134  Sum_probs=34.8

Q ss_pred             cCCceeEEEeccchhhhcCCH----------------------------------HHHHHHHHHHhccccCCcEEEEEec
Q 025775          102 KANQADLVCCFQHLQMCFETE----------------------------------ERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       102 ~~~~fD~V~~~~~l~~~~~~~----------------------------------~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      +.++.+++.+..++||+=.-+                                  .++..+++.=.+-|.|||.++++++
T Consensus       159 P~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~  238 (386)
T PLN02668        159 PARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCL  238 (386)
T ss_pred             CCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEe
Confidence            578899999999999852101                                  1345566667778899999999865


Q ss_pred             Ch
Q 025775          148 DS  149 (248)
Q Consensus       148 ~~  149 (248)
                      ..
T Consensus       239 Gr  240 (386)
T PLN02668        239 GR  240 (386)
T ss_pred             cC
Confidence            43

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=96.61  E-value=0.0059  Score=49.47  Aligned_cols=53  Identities=26%  Similarity=0.263  Sum_probs=39.9

Q ss_pred             HHHHHHHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHH
Q 025775           19 FAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARD   72 (248)
Q Consensus        19 ~~~~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~   72 (248)
                      -+-..+|..+..++..|||.-||+|..+......+- +.+|+|+++...+.|++
T Consensus       179 ~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  179 ELIERLIKASTNPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             HHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred             HHHHHHHHhhhccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence            344567788888999999999999987766655555 89999999999998864

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=96.58  E-value=0.017  Score=47.25  Aligned_cols=106  Identities=15%  Similarity=0.058  Sum_probs=69.2

Q ss_pred             hcCCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCc
Q 025775           28 YSHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (248)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (248)
                      +++|+.+||-||.+.|.........  +-.-|++++.|+.+=...-...   ....++--+.-|+..+.-..-   .-+.
T Consensus       153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmA---kkRtNiiPIiEDArhP~KYRm---lVgm  226 (317)
T KOG1596|consen  153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMA---KKRTNIIPIIEDARHPAKYRM---LVGM  226 (317)
T ss_pred             eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHh---hccCCceeeeccCCCchheee---eeee
Confidence            3459999999999999988877664  4457999999986533221111   111235566777765432110   1246


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      .|+|++.-      -..++..-+.-|..-.||+||.|++.
T Consensus       227 VDvIFaDv------aqpdq~RivaLNA~~FLk~gGhfvis  260 (317)
T KOG1596|consen  227 VDVIFADV------AQPDQARIVALNAQYFLKNGGHFVIS  260 (317)
T ss_pred             EEEEeccC------CCchhhhhhhhhhhhhhccCCeEEEE
Confidence            77776543      23445666677888999999999998

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.55  E-value=0.035  Score=42.04  Aligned_cols=106  Identities=15%  Similarity=0.078  Sum_probs=72.0

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      .+..+.+|||+|-|......++.+...-+|+++++-.+.+++-+.-..+......|..-|+-..++        ..|.-|
T Consensus        71 n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl--------~dy~~v  142 (199)
T KOG4058|consen   71 NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDL--------RDYRNV  142 (199)
T ss_pred             CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccc--------cccceE
Confidence            356789999999999988888877668899999999988887665444444457788888766554        233334


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE-ecChh
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI-TPDSS  150 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~-~~~~~  150 (248)
                      +...       .+..+..+-..+..-|..|..++.. +|-..
T Consensus       143 viFg-------aes~m~dLe~KL~~E~p~nt~vvacRFPLP~  177 (199)
T KOG4058|consen  143 VIFG-------AESVMPDLEDKLRTELPANTRVVACRFPLPT  177 (199)
T ss_pred             EEee-------hHHHHhhhHHHHHhhCcCCCeEEEEecCCCc
Confidence            3332       2333455556666677777777665 44443

>PRK13699 putative methylase; Provisional

Probab=96.51  E-value=0.011  Score=48.64  Aligned_cols=56  Identities=21%  Similarity=0.319  Sum_probs=46.2

Q ss_pred             HHHHHHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHh
Q 025775           20 AKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN   76 (248)
Q Consensus        20 ~~~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~   76 (248)
                      +-..+|+.+..+|..|||.-||+|..+......+- +++|+|+++...+.|.+|+..
T Consensus       152 l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~  207 (227)
T PRK13699        152 SLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAA  207 (227)
T ss_pred             HHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHH
Confidence            34456777788999999999999987766655554 899999999999999998765

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.48  E-value=0.0066  Score=49.21  Aligned_cols=115  Identities=20%  Similarity=0.251  Sum_probs=74.4

Q ss_pred             CCeEEEEcCCCCccHhHHHHcC--------C--CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhh-c
Q 025775           32 YVTVCDLYCGAGVDVDKWETAL--------I--ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM-Q  100 (248)
Q Consensus        32 ~~~VLDlGcG~G~~~~~l~~~~--------~--~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~  100 (248)
                      -.+|.||+...|.+++.+.+.-        .  ..++++|+.+-+        +-.+    +.-+++|+++..-.+.+ .
T Consensus        42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma--------PI~G----V~qlq~DIT~~stae~Ii~  109 (294)
T KOG1099|consen   42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA--------PIEG----VIQLQGDITSASTAEAIIE  109 (294)
T ss_pred             hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC--------ccCc----eEEeecccCCHhHHHHHHH
Confidence            3579999999999998886541        1  139999986532        1122    67789999885433221 1


Q ss_pred             c-cCCceeEEEeccc-----hhhhcCC--HHHHHHHHHHHhccccCCcEEEEEecCh---hHHHHHHHH
Q 025775          101 E-KANQADLVCCFQH-----LQMCFET--EERARRLLQNVSSLLKPGGYFLGITPDS---STIWAKYQK  158 (248)
Q Consensus       101 ~-~~~~fD~V~~~~~-----l~~~~~~--~~~~~~~l~~~~~~LkpgG~~i~~~~~~---~~~~~~~~~  158 (248)
                      . ...+.|+|+|-.+     +|.+=+-  .+-+..++.-...+|+|||.|+.-+..+   ..++.+++.
T Consensus       110 hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tslLysql~~  178 (294)
T KOG1099|consen  110 HFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSLLYSQLRK  178 (294)
T ss_pred             HhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCchHHHHHHHHH
Confidence            1 3458999999763     4532111  1234566777788999999999875544   555555554

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.37  E-value=0.013  Score=50.43  Aligned_cols=122  Identities=15%  Similarity=0.139  Sum_probs=65.8

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      ...+|||+|.|.|.-+......  ....++-++.|+..-+......+... ..+...-..|++...+      +-+.-|.
T Consensus       113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~-t~~td~r~s~vt~dRl------~lp~ad~  185 (484)
T COG5459         113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVS-TEKTDWRASDVTEDRL------SLPAADL  185 (484)
T ss_pred             CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcc-cccCCCCCCccchhcc------CCCccce
Confidence            3467999999999654444332  22356666666655444433322211 1112222333322211      1234455


Q ss_pred             EEeccchhhhc--CCHHHHHHHHHHHhccccCCcEEEEE---ecChhHHHHHHHHh
Q 025775          109 VCCFQHLQMCF--ETEERARRLLQNVSSLLKPGGYFLGI---TPDSSTIWAKYQKN  159 (248)
Q Consensus       109 V~~~~~l~~~~--~~~~~~~~~l~~~~~~LkpgG~~i~~---~~~~~~~~~~~~~~  159 (248)
                      +++..+++..+  ..+..+...++.+...+.|||.+++.   +|-+-.++.+.++.
T Consensus       186 ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf~~I~rAR~~  241 (484)
T COG5459         186 YTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGFERILRARQI  241 (484)
T ss_pred             eehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhHHHHHHHHHH
Confidence            55544554432  23344566899999999999999999   44444555555543

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=96.33  E-value=0.042  Score=48.47  Aligned_cols=111  Identities=15%  Similarity=0.066  Sum_probs=74.0

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      |+.+|||+++..|+=+..++..  +.+.+++.|.+.+-+....+.....+. ........|..+  +.+..  -.++||-
T Consensus       241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv-~ntiv~n~D~~e--f~~~~--~~~~fDR  315 (460)
T KOG1122|consen  241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV-TNTIVSNYDGRE--FPEKE--FPGSFDR  315 (460)
T ss_pred             CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC-CceEEEccCccc--ccccc--cCcccce
Confidence            7899999999999988777664  566899999999998888777766552 124445555543  21111  1347998


Q ss_pred             EEeccchhh-----------hcCCH-------HHHHHHHHHHhccccCCcEEEEEe
Q 025775          109 VCCFQHLQM-----------CFETE-------ERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       109 V~~~~~l~~-----------~~~~~-------~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      |..-.-.-.           ...+.       .-.++++.....++++||+++-++
T Consensus       316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST  371 (460)
T KOG1122|consen  316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST  371 (460)
T ss_pred             eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence            864321110           00111       224678889999999999999773

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=96.25  E-value=0.0029  Score=45.31  Aligned_cols=41  Identities=27%  Similarity=0.518  Sum_probs=31.8

Q ss_pred             ceeEEEeccchhhhcC--CHHHHHHHHHHHhccccCCcEEEEE
Q 025775          105 QADLVCCFQHLQMCFE--TEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~--~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      .||+|+|..+.-+...  .++-+..+++.+.+.|+|||+|++-
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE   43 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE   43 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence            4899999876644333  3456889999999999999999987

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=96.16  E-value=0.48  Score=39.02  Aligned_cols=108  Identities=14%  Similarity=-0.115  Sum_probs=62.6

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      .|.+||=+|=+--..+...+....++++.+||++..++.-++.....+.  +++..+.|+...-.. .   -.++||+++
T Consensus        44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl--~i~~~~~DlR~~LP~-~---~~~~fD~f~  117 (243)
T PF01861_consen   44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL--PIEAVHYDLRDPLPE-E---LRGKFDVFF  117 (243)
T ss_dssp             TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---T-T---TSS-BSEEE
T ss_pred             cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC--ceEEEEecccccCCH-H---HhcCCCEEE
Confidence            6899999984432212122223567999999999999988877766653  488899998764221 1   258999997


Q ss_pred             eccchhhhcCCHHHHHHHHHHHhccccCCc-EEEEEecCh
Q 025775          111 CFQHLQMCFETEERARRLLQNVSSLLKPGG-YFLGITPDS  149 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG-~~i~~~~~~  149 (248)
                      +.-     ..+.+-+.-++++....||..| ..++.+-..
T Consensus       118 TDP-----PyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~  152 (243)
T PF01861_consen  118 TDP-----PYTPEGLKLFLSRGIEALKGEGCAGYFGFTHK  152 (243)
T ss_dssp             E--------SSHHHHHHHHHHHHHTB-STT-EEEEEE-TT
T ss_pred             eCC-----CCCHHHHHHHHHHHHHHhCCCCceEEEEEecC
Confidence            754     2467788999999999998655 545543333

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=96.00  E-value=0.035  Score=44.29  Aligned_cols=47  Identities=15%  Similarity=0.176  Sum_probs=38.5

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhc
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ   77 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~   77 (248)
                      +.-...|||||-|+++..++.. +-..+.|.+|--..-++.++|....
T Consensus        60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~AL  107 (249)
T KOG3115|consen   60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQAL  107 (249)
T ss_pred             ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHH
Confidence            3457999999999999999776 3347889999999988888887653

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=95.96  E-value=0.089  Score=44.43  Aligned_cols=120  Identities=13%  Similarity=0.053  Sum_probs=80.9

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcC---CCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      ...+||=+|-|-|+.+.....+ ...++.-+|++...++..++-.+...   ...++.+..+|-..  +.+..  +.++|
T Consensus       121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~--fl~~~--~~~~~  196 (337)
T KOG1562|consen  121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFL--FLEDL--KENPF  196 (337)
T ss_pred             CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHH--HHHHh--ccCCc
Confidence            4688999999999988766655 56789999999999998888665422   12357777777522  32222  47899


Q ss_pred             eEEEeccchhhhcCC--HHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHH
Q 025775          107 DLVCCFQHLQMCFET--EERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ  157 (248)
Q Consensus       107 D~V~~~~~l~~~~~~--~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~  157 (248)
                      |+|+.-..=.-  .+  ..-.+..++.+.+.||+||+.+..- +.-.+..++.
T Consensus       197 dVii~dssdpv--gpa~~lf~~~~~~~v~~aLk~dgv~~~q~-ec~wl~~~~i  246 (337)
T KOG1562|consen  197 DVIITDSSDPV--GPACALFQKPYFGLVLDALKGDGVVCTQG-ECMWLHLDYI  246 (337)
T ss_pred             eEEEEecCCcc--chHHHHHHHHHHHHHHHhhCCCcEEEEec-ceehHHHHHH
Confidence            99976331110  11  1135678899999999999998774 3333444443

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=95.88  E-value=0.051  Score=44.98  Aligned_cols=109  Identities=16%  Similarity=-0.016  Sum_probs=61.7

Q ss_pred             CCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHH----HhcCCCceEEEEEcCCCCCchhhhhcccCCc-e
Q 025775           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTW----ENQRKNFIAEFFEADPCAENFETQMQEKANQ-A  106 (248)
Q Consensus        32 ~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~----~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-f  106 (248)
                      ..+||++|+|+|-....++.....+|...|+..........+-    ...+.+.++.....+-....-....   ... +
T Consensus        87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~---~~~~~  163 (248)
T KOG2793|consen   87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFR---LPNPF  163 (248)
T ss_pred             ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhc---cCCcc
Confidence            5579999999995555555445568999998766544332211    1111111232222222222111111   223 9


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      |+|++..++.    ..+...-++..+...|..+|.+++.++
T Consensus       164 DlilasDvvy----~~~~~e~Lv~tla~ll~~~~~i~l~~~  200 (248)
T KOG2793|consen  164 DLILASDVVY----EEESFEGLVKTLAFLLAKDGTIFLAYP  200 (248)
T ss_pred             cEEEEeeeee----cCCcchhHHHHHHHHHhcCCeEEEEEe
Confidence            9999887543    345566677778888888886666544

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=95.87  E-value=0.02  Score=48.43  Aligned_cols=69  Identities=19%  Similarity=0.110  Sum_probs=51.4

Q ss_pred             eEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEecc
Q 025775           34 TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQ  113 (248)
Q Consensus        34 ~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~  113 (248)
                      +|+|+.||.|+....+...+...+.++|+++.+++..+..+..       ..+++|+.+.....    ....+|+++...
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~----~~~~~D~l~~gp   70 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKD----FIPDIDLLTGGF   70 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhh----cCCCCCEEEeCC
Confidence            6999999999998888888887889999999998876665432       15677776644321    035699998755

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=95.77  E-value=0.028  Score=48.06  Aligned_cols=79  Identities=16%  Similarity=0.170  Sum_probs=52.1

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc--cCCc
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQ  105 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~  105 (248)
                      ..++...+|.--|.|+++..++.. +...++|+|.++.+++.|++++...  ..++.+++.+..+  +...+..  ...+
T Consensus        18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~--l~~~l~~~~~~~~   93 (310)
T PF01795_consen   18 PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSN--LDEYLKELNGINK   93 (310)
T ss_dssp             --TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGG--HHHHHHHTTTTS-
T ss_pred             cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHH--HHHHHHHccCCCc
Confidence            457889999999999999999876 4479999999999999998876532  2347888888644  2222221  2346


Q ss_pred             eeEEEe
Q 025775          106 ADLVCC  111 (248)
Q Consensus       106 fD~V~~  111 (248)
                      +|.|+.
T Consensus        94 ~dgiL~   99 (310)
T PF01795_consen   94 VDGILF   99 (310)
T ss_dssp             EEEEEE
T ss_pred             cCEEEE
Confidence            777765

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=95.72  E-value=0.0037  Score=55.91  Aligned_cols=112  Identities=13%  Similarity=0.159  Sum_probs=75.8

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      ++.+|||.-|++|..+..++..  +..++++-|.++++++.-+...+-++....++-.+.|+...-.. . +.....||+
T Consensus       109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~-~-~~~~~~FDv  186 (525)
T KOG1253|consen  109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYE-H-PMVAKFFDV  186 (525)
T ss_pred             CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHh-c-cccccccce
Confidence            4678999999999999888876  66799999999999997777665544322344445554321111 0 012468999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHH
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~  152 (248)
                      |-.        ++-.....++....+.++.||++.+|.-|...+
T Consensus       187 IDL--------DPyGs~s~FLDsAvqav~~gGLL~vT~TD~aVL  222 (525)
T KOG1253|consen  187 IDL--------DPYGSPSPFLDSAVQAVRDGGLLCVTCTDMAVL  222 (525)
T ss_pred             Eec--------CCCCCccHHHHHHHHHhhcCCEEEEEecchHhh
Confidence            933        233334567777788889999999996555333

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=95.69  E-value=0.072  Score=46.19  Aligned_cols=96  Identities=16%  Similarity=0.123  Sum_probs=64.4

Q ss_pred             HhcCCCCeEEEEcCC-CCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCc
Q 025775           27 IYSHPYVTVCDLYCG-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (248)
Q Consensus        27 ~~~~~~~~VLDlGcG-~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (248)
                      ..+.|+.+|+=.|+| -|+.+.+++..-.++|+++|.+++-++.|++.-..       .++...  +.+..+.+   .+.
T Consensus       162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd-------~~i~~~--~~~~~~~~---~~~  229 (339)
T COG1064         162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGAD-------HVINSS--DSDALEAV---KEI  229 (339)
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCc-------EEEEcC--CchhhHHh---Hhh
Confidence            345689999999988 35666677664336999999999999888875332       233322  22222222   234


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +|+|+..-. .          ..+....+.|++||.+++.
T Consensus       230 ~d~ii~tv~-~----------~~~~~~l~~l~~~G~~v~v  258 (339)
T COG1064         230 ADAIIDTVG-P----------ATLEPSLKALRRGGTLVLV  258 (339)
T ss_pred             CcEEEECCC-h----------hhHHHHHHHHhcCCEEEEE
Confidence            999977554 3          2466677789999999987

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=95.57  E-value=0.085  Score=45.88  Aligned_cols=112  Identities=13%  Similarity=0.171  Sum_probs=73.0

Q ss_pred             HHHHhcCC-CCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc
Q 025775           24 LIKIYSHP-YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE  101 (248)
Q Consensus        24 li~~~~~~-~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  101 (248)
                      +++.+... ..+|||.-||+|.=...++.. +...++.-|+||++++..+.....+. ..+...+..|+..     .+..
T Consensus        44 ~l~~~~~~~~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~-~~~~~v~n~DAN~-----lm~~  117 (380)
T COG1867          44 VLKAFGKLLPKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS-GEDAEVINKDANA-----LLHE  117 (380)
T ss_pred             HHHHhhccCCeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC-cccceeecchHHH-----HHHh
Confidence            34444432 688999999999766666555 33389999999999999998776551 1234555566522     2222


Q ss_pred             cCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       102 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      ....||+|=.        ++-.....++....+.++.||++-+|.-|.
T Consensus       118 ~~~~fd~IDi--------DPFGSPaPFlDaA~~s~~~~G~l~vTATD~  157 (380)
T COG1867         118 LHRAFDVIDI--------DPFGSPAPFLDAALRSVRRGGLLCVTATDT  157 (380)
T ss_pred             cCCCccEEec--------CCCCCCchHHHHHHHHhhcCCEEEEEeccc
Confidence            3478999933        222233446666667778899999984443

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=95.53  E-value=0.027  Score=43.23  Aligned_cols=104  Identities=16%  Similarity=0.122  Sum_probs=58.0

Q ss_pred             CCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHH-HHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGE-ARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        32 ~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~-a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      +.+++=+|+..=-.-......+.+++.-++.++--++. .+.+.             ..+...++...+....++||.+.
T Consensus         2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~-------------ssi~p~df~~~~~~y~~~fD~~a   68 (177)
T PF03269_consen    2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRL-------------SSILPVDFAKNWQKYAGSFDFAA   68 (177)
T ss_pred             CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCccccccc-------------ccccHHHHHHHHHHhhccchhhh
Confidence            45667777653221112223466678888766533221 11110             11111123333333578899999


Q ss_pred             eccchhhh--------cCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          111 CFQHLQMC--------FETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       111 ~~~~l~~~--------~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      |..++.+.        ..+..+ ...+.++.++|||||.+++.+|-+
T Consensus        69 s~~siEh~GLGRYGDPidp~Gd-l~~m~~i~~vLK~GG~L~l~vPvG  114 (177)
T PF03269_consen   69 SFSSIEHFGLGRYGDPIDPIGD-LRAMAKIKCVLKPGGLLFLGVPVG  114 (177)
T ss_pred             eechhccccccccCCCCCcccc-HHHHHHHHHhhccCCeEEEEeecC
Confidence            88777432        122222 456778999999999999998855

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=95.44  E-value=0.57  Score=39.28  Aligned_cols=113  Identities=12%  Similarity=0.017  Sum_probs=71.7

Q ss_pred             CCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChH-HHHHHHHHHHhcC--CCceEEEEEcCCCCCchhhhhccc---CCc
Q 025775           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATS-GIGEARDTWENQR--KNFIAEFFEADPCAENFETQMQEK---ANQ  105 (248)
Q Consensus        32 ~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~-~l~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~---~~~  105 (248)
                      ...|+.||||-=  +..+.-.....+..+|++-. +++.-++.+...+  ...+..++.+|+. .+....+...   ...
T Consensus        82 ~~qvV~LGaGlD--Tr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~-~~w~~~L~~~gfd~~~  158 (260)
T TIGR00027        82 IRQVVILGAGLD--TRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLR-QDWPAALAAAGFDPTA  158 (260)
T ss_pred             CcEEEEeCCccc--cHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCch-hhHHHHHHhCCCCCCC
Confidence            346999999864  33332221223445555544 4555555555322  2245788999987 4443333211   234


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      --++++-.++.|  .+.+....+++.+.+...||+.+++...+.
T Consensus       159 ptl~i~EGvl~Y--L~~~~v~~ll~~i~~~~~~gs~l~~d~~~~  200 (260)
T TIGR00027       159 PTAWLWEGLLMY--LTEEAVDALLAFIAELSAPGSRLAFDYVRP  200 (260)
T ss_pred             Ceeeeecchhhc--CCHHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence            457777888887  678889999999999988999999986553

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=95.38  E-value=0.012  Score=49.60  Aligned_cols=80  Identities=19%  Similarity=-0.013  Sum_probs=59.4

Q ss_pred             HhcCCCCeEEEEcCCCCccHh-HHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCc
Q 025775           27 IYSHPYVTVCDLYCGAGVDVD-KWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (248)
Q Consensus        27 ~~~~~~~~VLDlGcG~G~~~~-~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (248)
                      .+...+..|.|+-.|-|.++. .+...+.+.|.++|.+|.+++..+...+.++...+.....+|.....+       ...
T Consensus       190 ~~sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~-------~~~  262 (351)
T KOG1227|consen  190 NTSCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKP-------RLR  262 (351)
T ss_pred             hcccccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCc-------ccc
Confidence            444456889999999999998 666778889999999999999888877666544445556666554433       567


Q ss_pred             eeEEEecc
Q 025775          106 ADLVCCFQ  113 (248)
Q Consensus       106 fD~V~~~~  113 (248)
                      .|-|....
T Consensus       263 AdrVnLGL  270 (351)
T KOG1227|consen  263 ADRVNLGL  270 (351)
T ss_pred             chheeecc
Confidence            78885543

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=95.28  E-value=0.035  Score=49.26  Aligned_cols=56  Identities=16%  Similarity=0.031  Sum_probs=46.1

Q ss_pred             CeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEc
Q 025775           33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEA   88 (248)
Q Consensus        33 ~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~   88 (248)
                      ..|||||.|||.++.....++...+++++.-..|.+.|+.....++...++..+.-
T Consensus        68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInk  123 (636)
T KOG1501|consen   68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINK  123 (636)
T ss_pred             EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeecc
Confidence            46999999999877777777777899999999999999998887776666665543

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=95.27  E-value=0.14  Score=43.63  Aligned_cols=113  Identities=17%  Similarity=0.231  Sum_probs=75.1

Q ss_pred             CeEEEEcCCCCccHhHHHHcC------------C---------CeEEEEeCChH--HHHHHHHHHHh-------------
Q 025775           33 VTVCDLYCGAGVDVDKWETAL------------I---------ANYIGIDVATS--GIGEARDTWEN-------------   76 (248)
Q Consensus        33 ~~VLDlGcG~G~~~~~l~~~~------------~---------~~v~giDis~~--~l~~a~~~~~~-------------   76 (248)
                      .+||-||-|.|.-+..++..-            .         -.++.+||.+=  .++.-......             
T Consensus        88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~  167 (315)
T PF11312_consen   88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW  167 (315)
T ss_pred             ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence            699999999987766554320            1         27999998752  22222221111             


Q ss_pred             ---cCCCceEEEEEcCCCCCchhhhhcc-cCCceeEEEeccchhhhcC-CHHHHHHHHHHHhccccCCcEEEEE
Q 025775           77 ---QRKNFIAEFFEADPCAENFETQMQE-KANQADLVCCFQHLQMCFE-TEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus        77 ---~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~fD~V~~~~~l~~~~~-~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                         ....+.+.|.+.|+..........- .....|+|+..|.++..|. ......+++.++...++||..+++.
T Consensus       168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVv  241 (315)
T PF11312_consen  168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVV  241 (315)
T ss_pred             ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEE
Confidence               1123568999999977554221000 1236899999998876654 4567789999999999999999887

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=95.25  E-value=0.065  Score=43.67  Aligned_cols=85  Identities=9%  Similarity=0.104  Sum_probs=53.0

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhc-CCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQ-RKNFIAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      ++.++||||.|.--.=-.+-.+  ++ +.+|.|+++.+++.|+.....+ +....+++....-.+ .+........+.||
T Consensus        78 ~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~-~if~giig~nE~yd  155 (292)
T COG3129          78 KNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSD-AIFNGIIGKNERYD  155 (292)
T ss_pred             CceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcc-ccccccccccceee
Confidence            5678999988764321111111  34 8999999999999999887665 333334444322111 12222222467899


Q ss_pred             EEEeccchhh
Q 025775          108 LVCCFQHLQM  117 (248)
Q Consensus       108 ~V~~~~~l~~  117 (248)
                      .+.|+--+|.
T Consensus       156 ~tlCNPPFh~  165 (292)
T COG3129         156 ATLCNPPFHD  165 (292)
T ss_pred             eEecCCCcch
Confidence            9999988885

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=95.00  E-value=0.094  Score=43.07  Aligned_cols=76  Identities=13%  Similarity=0.087  Sum_probs=45.0

Q ss_pred             CeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHH---HHHHhcCC-----CceEEEEEcCCCCCchhhhhcccCC
Q 025775           33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEAR---DTWENQRK-----NFIAEFFEADPCAENFETQMQEKAN  104 (248)
Q Consensus        33 ~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~---~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~~~~  104 (248)
                      .+|||.-+|-|.++.-++..+. +|++++-||.+-...+   +++.....     ..+++++++|..+  +.   ...+.
T Consensus        77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~--~L---~~~~~  150 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALE--YL---RQPDN  150 (234)
T ss_dssp             --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCC--HC---CCHSS
T ss_pred             CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHH--HH---hhcCC
Confidence            3899999999999998887776 8999999998654433   33333221     1358999999855  21   12468


Q ss_pred             ceeEEEeccc
Q 025775          105 QADLVCCFQH  114 (248)
Q Consensus       105 ~fD~V~~~~~  114 (248)
                      +||+|..--.
T Consensus       151 s~DVVY~DPM  160 (234)
T PF04445_consen  151 SFDVVYFDPM  160 (234)
T ss_dssp             --SEEEE--S
T ss_pred             CCCEEEECCC
Confidence            9999988653

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=94.96  E-value=0.14  Score=40.64  Aligned_cols=110  Identities=22%  Similarity=0.099  Sum_probs=59.4

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHH----HHH-HHHhcCCCceEEEEEcCCCCCchhhhhcc
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGE----ARD-TWENQRKNFIAEFFEADPCAENFETQMQE  101 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~----a~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  101 (248)
                      ++++.+|+|+-.|.|.++.-+...  +-+.|++.-..+...-.    .+. .........+.+.+-.++....       
T Consensus        46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-------  118 (238)
T COG4798          46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-------  118 (238)
T ss_pred             cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-------
Confidence            568999999999999998877654  22356665544331111    000 0000000000112222211111       


Q ss_pred             cCCceeEEEecc---chhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          102 KANQADLVCCFQ---HLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       102 ~~~~fD~V~~~~---~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      .+...|++....   .+|.-..+......+...+++.|||||++++.
T Consensus       119 ~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~  165 (238)
T COG4798         119 APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVE  165 (238)
T ss_pred             CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEE
Confidence            234556654422   23322233556788899999999999999887

>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []

Probab=94.94  E-value=0.56  Score=41.53  Aligned_cols=128  Identities=15%  Similarity=0.172  Sum_probs=71.8

Q ss_pred             CCCeEEEEcCCCCccH----hHHHHcC---C-CeEEEEeC----ChHHHHHHHHHHHhc--CCCceEEEEEc---CCCCC
Q 025775           31 PYVTVCDLYCGAGVDV----DKWETAL---I-ANYIGIDV----ATSGIGEARDTWENQ--RKNFIAEFFEA---DPCAE   93 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~----~~l~~~~---~-~~v~giDi----s~~~l~~a~~~~~~~--~~~~~~~~~~~---d~~~~   93 (248)
                      +.-+|+|+|.|.|.-=    ..++..+   + -++||++.    +...++.+.++....  ..+.+.+|...   +....
T Consensus       110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l  189 (374)
T PF03514_consen  110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDL  189 (374)
T ss_pred             cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhC
Confidence            5568999999998422    2222221   2 28999999    788888877765432  11222344332   22222


Q ss_pred             chhhhhcccCCceeEEEeccchhhhcCCHH----HHHHHHHHHhccccCCcEEEEE---ecChhHHHHHHHHhH
Q 025775           94 NFETQMQEKANQADLVCCFQHLQMCFETEE----RARRLLQNVSSLLKPGGYFLGI---TPDSSTIWAKYQKNV  160 (248)
Q Consensus        94 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~----~~~~~l~~~~~~LkpgG~~i~~---~~~~~~~~~~~~~~~  160 (248)
                      ... .+...++..=+|.|.+.+|++.....    ....++..+ +.|+|.-+.++.   -.|+..+..++.+.+
T Consensus       190 ~~~-~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~i-r~L~P~vvv~~E~ea~~n~~~F~~RF~eal  261 (374)
T PF03514_consen  190 DPS-MLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVI-RSLNPKVVVLVEQEADHNSPSFLERFREAL  261 (374)
T ss_pred             CHH-HhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHH-HhcCCCEEEEEeecCCCCCCchHHHHHHHH
Confidence            111 11112344556778888998653221    245566655 477998666655   334566666666543

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.

>PHA01634 hypothetical protein

Probab=94.93  E-value=0.085  Score=38.93  Aligned_cols=46  Identities=4%  Similarity=-0.178  Sum_probs=41.3

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHh
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN   76 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~   76 (248)
                      .+.+|+|||.+-|..+..++..+.+.|+++++++...+..++....
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~   73 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAY   73 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhh
Confidence            7899999999999999999999999999999999998888775544

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.87  E-value=0.13  Score=44.10  Aligned_cols=103  Identities=11%  Similarity=0.075  Sum_probs=62.4

Q ss_pred             CCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCc-hhhhhcc--cCC
Q 025775           30 HPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN-FETQMQE--KAN  104 (248)
Q Consensus        30 ~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~--~~~  104 (248)
                      .+|.+||=+|+|+ |..+..+++. +.++|+.+|++++-|+.|++ +-..     .........+.+ +.+.+..  ...
T Consensus       168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~-----~~~~~~~~~~~~~~~~~v~~~~g~~  241 (354)
T KOG0024|consen  168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGAT-----VTDPSSHKSSPQELAELVEKALGKK  241 (354)
T ss_pred             ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCe-----EEeeccccccHHHHHHHHHhhcccc
Confidence            4799999999997 5555555554 77899999999999999987 3211     111111111111 1111111  123


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      .+|+++.-..+          +..++.....+++||.+++....
T Consensus       242 ~~d~~~dCsG~----------~~~~~aai~a~r~gGt~vlvg~g  275 (354)
T KOG0024|consen  242 QPDVTFDCSGA----------EVTIRAAIKATRSGGTVVLVGMG  275 (354)
T ss_pred             CCCeEEEccCc----------hHHHHHHHHHhccCCEEEEeccC
Confidence            48877543333          33455567788999997776433

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=94.83  E-value=0.035  Score=47.75  Aligned_cols=115  Identities=17%  Similarity=0.154  Sum_probs=77.1

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHH-------HHHHhcCC-CceEEEEEcCCCCCchhhhhc
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEAR-------DTWENQRK-NFIAEFFEADPCAENFETQMQ  100 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~-------~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~  100 (248)
                      +.||+-|+|--.|||+++...+..+. .|.|.||+-.++...+       +.+++-+. ..-+..+.+|....++.    
T Consensus       206 v~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~r----  280 (421)
T KOG2671|consen  206 VKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLR----  280 (421)
T ss_pred             cCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchh----
Confidence            45899999999999998877766666 8999999999887332       22222221 12256788888877765    


Q ss_pred             ccCCceeEEEecc--chh-----------------------hhcCC----HHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          101 EKANQADLVCCFQ--HLQ-----------------------MCFET----EERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       101 ~~~~~fD~V~~~~--~l~-----------------------~~~~~----~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                       ....||.|+|.-  ++.                       +-...    ..-...++.-..+.|..||.+++..|..
T Consensus       281 -sn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~~  357 (421)
T KOG2671|consen  281 -SNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPTI  357 (421)
T ss_pred             -hcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecCch
Confidence             356899999942  111                       10000    0123456777788999999999987743

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=94.79  E-value=0.065  Score=48.43  Aligned_cols=109  Identities=17%  Similarity=0.216  Sum_probs=65.2

Q ss_pred             CeEEEEcCCCCccHhHHHHcCCCeEEEEeCCh----HHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           33 VTVCDLYCGAGVDVDKWETALIANYIGIDVAT----SGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        33 ~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~----~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      .+|+|...|.|+++..+...+   |+....-+    +.+..-..|    +.   + -...|-.+ .|.    -.+.+||+
T Consensus       367 RNVMDMnAg~GGFAAAL~~~~---VWVMNVVP~~~~ntL~vIydR----GL---I-G~yhDWCE-~fs----TYPRTYDL  430 (506)
T PF03141_consen  367 RNVMDMNAGYGGFAAALIDDP---VWVMNVVPVSGPNTLPVIYDR----GL---I-GVYHDWCE-AFS----TYPRTYDL  430 (506)
T ss_pred             eeeeeecccccHHHHHhccCC---ceEEEecccCCCCcchhhhhc----cc---c-hhccchhh-ccC----CCCcchhh
Confidence            479999999999998887654   33333222    222222111    10   1 01122211 111    14789999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHHHhH
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNV  160 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~  160 (248)
                      |.+...+-. ....-++..++-++-|.|+|||.+++.  +...+..+..+..
T Consensus       431 lHA~~lfs~-~~~rC~~~~illEmDRILRP~G~~iiR--D~~~vl~~v~~i~  479 (506)
T PF03141_consen  431 LHADGLFSL-YKDRCEMEDILLEMDRILRPGGWVIIR--DTVDVLEKVKKIA  479 (506)
T ss_pred             eehhhhhhh-hcccccHHHHHHHhHhhcCCCceEEEe--ccHHHHHHHHHHH
Confidence            988765543 133346788999999999999999875  5555555555443

; GO: 0008168 methyltransferase activity

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=94.45  E-value=0.046  Score=39.04  Aligned_cols=32  Identities=28%  Similarity=0.336  Sum_probs=24.9

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCC
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVA   63 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis   63 (248)
                      +...-.|||||+|-+..-+.+.++ .=.|+|.-
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R   89 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNSEGY-PGWGIDAR   89 (112)
T ss_pred             CCCceEEccCCchHHHHHHHhCCC-Cccccccc
Confidence            345789999999987777777777 67788864

; GO: 0008168 methyltransferase activity

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=94.41  E-value=0.29  Score=42.85  Aligned_cols=98  Identities=16%  Similarity=0.111  Sum_probs=61.7

Q ss_pred             CCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhccc-CCcee
Q 025775           31 PYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK-ANQAD  107 (248)
Q Consensus        31 ~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~fD  107 (248)
                      ++.+|+=+|||+ |..+..+++. +.++++.+|.++.-++.|++.....       .......+.......... ...+|
T Consensus       168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~-------~~~~~~~~~~~~~~~~~t~g~g~D  240 (350)
T COG1063         168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD-------VVVNPSEDDAGAEILELTGGRGAD  240 (350)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe-------EeecCccccHHHHHHHHhCCCCCC
Confidence            455899999998 5554455444 6779999999999999998754321       111111100011011111 23699


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +|+-...          ....+..+.+.++|||.+++.
T Consensus       241 ~vie~~G----------~~~~~~~ai~~~r~gG~v~~v  268 (350)
T COG1063         241 VVIEAVG----------SPPALDQALEALRPGGTVVVV  268 (350)
T ss_pred             EEEECCC----------CHHHHHHHHHHhcCCCEEEEE
Confidence            8865442          233778888899999998877

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=94.22  E-value=0.62  Score=40.67  Aligned_cols=121  Identities=15%  Similarity=0.002  Sum_probs=67.9

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc---C--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh--hh-c
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA---L--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET--QM-Q  100 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~---~--~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~-~  100 (248)
                      ++|+.+|||++...|+=+..+...   .  .+.+++=|.++.-+........... .........|+...+-..  .. .
T Consensus       153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~-~~~~~v~~~~~~~~p~~~~~~~~~  231 (375)
T KOG2198|consen  153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP-SPNLLVTNHDASLFPNIYLKDGND  231 (375)
T ss_pred             cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC-CcceeeecccceeccccccccCch
Confidence            358999999999999988777654   2  2379999999876655444332111 111222333332111000  00 0


Q ss_pred             ccCCceeEEEeccc-----hh-h---hcCC-H---------HHHHHHHHHHhccccCCcEEEEEecChh
Q 025775          101 EKANQADLVCCFQH-----LQ-M---CFET-E---------ERARRLLQNVSSLLKPGGYFLGITPDSS  150 (248)
Q Consensus       101 ~~~~~fD~V~~~~~-----l~-~---~~~~-~---------~~~~~~l~~~~~~LkpgG~~i~~~~~~~  150 (248)
                      .....||-|.|---     .+ .   .+.. +         .-.-.++.+..++||+||.++-++.+-.
T Consensus       232 ~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLn  300 (375)
T KOG2198|consen  232 KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLN  300 (375)
T ss_pred             hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCC
Confidence            02346888876321     10 0   0000 0         1134688899999999999998865543

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=93.89  E-value=0.21  Score=45.45  Aligned_cols=103  Identities=18%  Similarity=0.160  Sum_probs=72.5

Q ss_pred             CCeEEEEcCCCCccHhHHHHc------CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCc
Q 025775           32 YVTVCDLYCGAGVDVDKWETA------LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (248)
Q Consensus        32 ~~~VLDlGcG~G~~~~~l~~~------~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (248)
                      ...|+=+|.|.|-+..+..+.      .. ++++++-+|+++-..+.+ ....+..+++++..|++.-..      +..+
T Consensus       368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkV-klyavEKNPNAivtL~~~-n~~~W~~~Vtii~~DMR~w~a------p~eq  439 (649)
T KOG0822|consen  368 TTVIMVLGAGRGPLVDASLKAAEETDRKV-KLYAVEKNPNAIVTLQNR-NFECWDNRVTIISSDMRKWNA------PREQ  439 (649)
T ss_pred             eEEEEEecCCCccHHHHHHHHHHHhcCce-EEEEEecCcchhhhhhhh-chhhhcCeeEEEeccccccCC------chhh
Confidence            356889999999877554432      23 799999999998765542 222234569999999977542      2478


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEE
Q 025775          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLG  144 (248)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~  144 (248)
                      .|++++-.  -..|.+-+--.+.+.-+-+.|||+|+.|=
T Consensus       440 ~DI~VSEL--LGSFGDNELSPECLDG~q~fLkpdgIsIP  476 (649)
T KOG0822|consen  440 ADIIVSEL--LGSFGDNELSPECLDGAQKFLKPDGISIP  476 (649)
T ss_pred             ccchHHHh--hccccCccCCHHHHHHHHhhcCCCceEcc
Confidence            89987632  22344555567899999999999998763

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=93.88  E-value=0.52  Score=37.46  Aligned_cols=105  Identities=13%  Similarity=0.121  Sum_probs=72.0

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc-----CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhccc-CC
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK-AN  104 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~-----~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~  104 (248)
                      +...|+|+|.-.|+.+..++..     ...+|+++||+-..++-+....      .++.|++++-.++......... .+
T Consensus        69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~------p~i~f~egss~dpai~eqi~~~~~~  142 (237)
T COG3510          69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREV------PDILFIEGSSTDPAIAEQIRRLKNE  142 (237)
T ss_pred             CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcC------CCeEEEeCCCCCHHHHHHHHHHhcC
Confidence            4578999999999988777653     2348999999987765443321      2389999998877665443322 22


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      .--+.+|..+-|.    .+..-.-++....+|..|-++++.
T Consensus       143 y~kIfvilDsdHs----~~hvLAel~~~~pllsaG~Y~vVe  179 (237)
T COG3510         143 YPKIFVILDSDHS----MEHVLAELKLLAPLLSAGDYLVVE  179 (237)
T ss_pred             CCcEEEEecCCch----HHHHHHHHHHhhhHhhcCceEEEe
Confidence            2345555555554    445566677788888999999876

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=93.77  E-value=0.13  Score=45.55  Aligned_cols=108  Identities=19%  Similarity=0.166  Sum_probs=64.5

Q ss_pred             cCCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCC-chhhhhcc--cC
Q 025775           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE-NFETQMQE--KA  103 (248)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~--~~  103 (248)
                      +.++.+||.+|||. |..+..++.. +...++++|.+++.++.+++...       +..+..  ... .+...+..  ..
T Consensus       182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~-------~~vi~~--~~~~~~~~~l~~~~~~  252 (386)
T cd08283         182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLG-------AETINF--EEVDDVVEALRELTGG  252 (386)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC-------cEEEcC--CcchHHHHHHHHHcCC
Confidence            34788999999987 7777677665 44469999999999888776421       122211  111 12221111  22


Q ss_pred             CceeEEEeccchh-----------hhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          104 NQADLVCCFQHLQ-----------MCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       104 ~~fD~V~~~~~l~-----------~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      ..+|+|+..-.-+           +.+....+....+.++.+.|+++|.++..
T Consensus       253 ~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~  305 (386)
T cd08283         253 RGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII  305 (386)
T ss_pred             CCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence            3689886643111           00011122245678888999999999876

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues

Probab=93.26  E-value=1.1  Score=35.28  Aligned_cols=99  Identities=14%  Similarity=0.176  Sum_probs=56.7

Q ss_pred             CCC-eEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCC--CceEEEEEcCCCCCchhhhhccc---C
Q 025775           31 PYV-TVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRK--NFIAEFFEADPCAENFETQMQEK---A  103 (248)
Q Consensus        31 ~~~-~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~---~  103 (248)
                      ++. .|+.||||-=.....+.... ...++-+|. |++++..++.+.....  .....++.+|+.+..+...+.+.   .
T Consensus        77 ~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~  155 (183)
T PF04072_consen   77 PGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDP  155 (183)
T ss_dssp             TTESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-T
T ss_pred             CCCcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCC
Confidence            555 89999998754444443322 225555554 3345555444444311  11245799999886665555422   3


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHH
Q 025775          104 NQADLVCCFQHLQMCFETEERARRLLQNV  132 (248)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~  132 (248)
                      ...-++++-.++.|  .+.+....+++.+
T Consensus       156 ~~ptl~i~Egvl~Y--l~~~~~~~ll~~i  182 (183)
T PF04072_consen  156 DRPTLFIAEGVLMY--LSPEQVDALLRAI  182 (183)
T ss_dssp             TSEEEEEEESSGGG--S-HHHHHHHHHHH
T ss_pred             CCCeEEEEcchhhc--CCHHHHHHHHHHh
Confidence            55678888888888  5677788887765

It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=93.22  E-value=0.51  Score=43.44  Aligned_cols=102  Identities=18%  Similarity=0.217  Sum_probs=61.1

Q ss_pred             CCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCC-------------ch
Q 025775           31 PYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE-------------NF   95 (248)
Q Consensus        31 ~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-------------~~   95 (248)
                      ++.+|+=+|||. |..+...+.. +. .|+++|.+++-++.++..    +    .++...|..+.             ++
T Consensus       164 pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aesl----G----A~~v~i~~~e~~~~~~gya~~~s~~~  234 (509)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESM----G----AEFLELDFEEEGGSGDGYAKVMSEEF  234 (509)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----C----CeEEEeccccccccccchhhhcchhH
Confidence            689999999998 5444444444 55 899999999999888763    2    33332222111             11


Q ss_pred             hh----hhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775           96 ET----QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus        96 ~~----~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      ..    .+.+....+|+|+.......    ......+.++..+.+||||.++..
T Consensus       235 ~~~~~~~~~~~~~gaDVVIetag~pg----~~aP~lit~~~v~~mkpGgvIVdv  284 (509)
T PRK09424        235 IKAEMALFAEQAKEVDIIITTALIPG----KPAPKLITAEMVASMKPGSVIVDL  284 (509)
T ss_pred             HHHHHHHHHhccCCCCEEEECCCCCc----ccCcchHHHHHHHhcCCCCEEEEE
Confidence            00    00111146999977553221    111222348888899999998766

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=93.21  E-value=0.68  Score=33.19  Aligned_cols=95  Identities=16%  Similarity=0.145  Sum_probs=59.2

Q ss_pred             CCCCccHhHHHHc---CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEeccchh
Q 025775           40 CGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQ  116 (248)
Q Consensus        40 cG~G~~~~~l~~~---~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~  116 (248)
                      ||.|..+..++..   ....++.+|.+++.++.++...        +.++.+|..+.......  .-.+.|.|++..   
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~--------~~~i~gd~~~~~~l~~a--~i~~a~~vv~~~---   70 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG--------VEVIYGDATDPEVLERA--GIEKADAVVILT---   70 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT--------SEEEES-TTSHHHHHHT--TGGCESEEEEES---
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc--------cccccccchhhhHHhhc--CccccCEEEEcc---
Confidence            4555555555432   3348999999999887776432        56899999886554332  235688776644   


Q ss_pred             hhcCCHHHHHHHHHHHhccccCCcEEEEEecChhH
Q 025775          117 MCFETEERARRLLQNVSSLLKPGGYFLGITPDSST  151 (248)
Q Consensus       117 ~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~  151 (248)
                         .+. .....+....+.+.|...++....+...
T Consensus        71 ---~~d-~~n~~~~~~~r~~~~~~~ii~~~~~~~~  101 (116)
T PF02254_consen   71 ---DDD-EENLLIALLARELNPDIRIIARVNDPEN  101 (116)
T ss_dssp             ---SSH-HHHHHHHHHHHHHTTTSEEEEEESSHHH
T ss_pred             ---CCH-HHHHHHHHHHHHHCCCCeEEEEECCHHH
Confidence               223 3334444555777888888887776644

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=93.01  E-value=0.16  Score=42.64  Aligned_cols=51  Identities=16%  Similarity=-0.020  Sum_probs=36.4

Q ss_pred             hHHHHHHHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHH
Q 025775           18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIG   68 (248)
Q Consensus        18 ~~~~~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~   68 (248)
                      +.++..+-....-.+.+|||+|||.|-........+...+...|.|...++
T Consensus       103 ~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~  153 (282)
T KOG2920|consen  103 PYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR  153 (282)
T ss_pred             HHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence            333333323444578999999999997776666666568899999988874

>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]

Probab=92.97  E-value=0.079  Score=48.93  Aligned_cols=120  Identities=15%  Similarity=0.167  Sum_probs=65.3

Q ss_pred             HhcCCCCeEEEEcCCCCccHhHHHHc-CC-CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc--c
Q 025775           27 IYSHPYVTVCDLYCGAGVDVDKWETA-LI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--K  102 (248)
Q Consensus        27 ~~~~~~~~VLDlGcG~G~~~~~l~~~-~~-~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~  102 (248)
                      .++.++..||||||.+|++++-.... +. +-|+|+|+-|--         .   ..++.-++.|++.......+..  .
T Consensus        40 ~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik---------p---~~~c~t~v~dIttd~cr~~l~k~l~  107 (780)
T KOG1098|consen   40 KFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK---------P---IPNCDTLVEDITTDECRSKLRKILK  107 (780)
T ss_pred             ccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc---------c---CCccchhhhhhhHHHHHHHHHHHHH
Confidence            34668999999999999998766554 33 479999987631         0   0124445555543222111100  2


Q ss_pred             CCceeEEEeccchh-------hhcCCHHHHHHHHHHHhccccCCcEEEEE-ecCh--hHHHHHHHH
Q 025775          103 ANQADLVCCFQHLQ-------MCFETEERARRLLQNVSSLLKPGGYFLGI-TPDS--STIWAKYQK  158 (248)
Q Consensus       103 ~~~fD~V~~~~~l~-------~~~~~~~~~~~~l~~~~~~LkpgG~~i~~-~~~~--~~~~~~~~~  158 (248)
                      ..+.|+|..-++..       ..+....-.-..+.-....|+.||.|+-- +++.  ..+...+.+
T Consensus       108 t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvfrs~dy~~ll~v~~q  173 (780)
T KOG1098|consen  108 TWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVFRSEDYNGLLRVFGQ  173 (780)
T ss_pred             hCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccccccCCcchHHHHHHHH
Confidence            34568776544221       11111111234556667788899996644 3332  444444444

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=92.58  E-value=0.21  Score=42.75  Aligned_cols=68  Identities=16%  Similarity=0.144  Sum_probs=50.0

Q ss_pred             eEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEecc
Q 025775           34 TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQ  113 (248)
Q Consensus        34 ~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~  113 (248)
                      +++|+-||.|+....+...++..+.++|+++.+.+.-+..+.        .....|+.+.+.. .+  +. .+|+++...
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~-~l--~~-~~D~l~ggp   69 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPS-DL--PK-DVDLLIGGP   69 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHH-HH--HH-T-SEEEEE-
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccc-cc--cc-cceEEEecc
Confidence            689999999999999988888789999999998776655543        4678888776543 22  22 589987754

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=92.25  E-value=0.4  Score=41.62  Aligned_cols=96  Identities=13%  Similarity=0.116  Sum_probs=57.2

Q ss_pred             CCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775           30 HPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        30 ~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      .++.+||=.|||. |..+..++.. +..+++++|.+++-++.+++.    +    +..+ .|..+.++.+... ..+.+|
T Consensus       168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l----G----a~~v-i~~~~~~~~~~~~-~~g~~D  237 (343)
T PRK09880        168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM----G----ADKL-VNPQNDDLDHYKA-EKGYFD  237 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc----C----CcEE-ecCCcccHHHHhc-cCCCCC
Confidence            3688999999874 5555555554 555799999999988877652    1    1111 1212222221111 124589


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +|+....      .    ...+....+.|++||.++..
T Consensus       238 ~vid~~G------~----~~~~~~~~~~l~~~G~iv~~  265 (343)
T PRK09880        238 VSFEVSG------H----PSSINTCLEVTRAKGVMVQV  265 (343)
T ss_pred             EEEECCC------C----HHHHHHHHHHhhcCCEEEEE
Confidence            8865432      1    12455667788999999876

>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]

Probab=92.18  E-value=0.36  Score=43.37  Aligned_cols=124  Identities=13%  Similarity=0.015  Sum_probs=68.8

Q ss_pred             CCeEEEEcCCCCccHhHHHHc---CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc-cCCcee
Q 025775           32 YVTVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQAD  107 (248)
Q Consensus        32 ~~~VLDlGcG~G~~~~~l~~~---~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~fD  107 (248)
                      ...+.|+|.|.|...-.....   ....++.+|.|..|+........+... ..-.++...+....+   ++. ....||
T Consensus       201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~-~g~~~v~~~~~~r~~---~pi~~~~~yD  276 (491)
T KOG2539|consen  201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSH-IGEPIVRKLVFHRQR---LPIDIKNGYD  276 (491)
T ss_pred             hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhh-cCchhccccchhccc---CCCCccccee
Confidence            456888988877543222211   244799999999999887765544100 001111111111111   111 245699


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec---ChhHHHHHHHHh
Q 025775          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP---DSSTIWAKYQKN  159 (248)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~---~~~~~~~~~~~~  159 (248)
                      +|+|.+.+|..-.........-+-..+..++|+.+++.-+   -+-.+...-+++
T Consensus       277 lvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~~g~e~l~eaR~~  331 (491)
T KOG2539|consen  277 LVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTTMGLELLTEARQN  331 (491)
T ss_pred             eEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCccchhhHHHHHHh
Confidence            9999999987433343333444445566688998888733   334444444443

>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B

Probab=91.10  E-value=0.36  Score=36.61  Aligned_cols=105  Identities=15%  Similarity=0.017  Sum_probs=48.0

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      ....|||+|-|+|..=..+... +..+++.+|-.-..=       .. .....-.++++|+.+.--  .......+.-++
T Consensus        28 ~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~h-------p~-~~P~~~~~ilGdi~~tl~--~~~~~g~~a~la   97 (160)
T PF12692_consen   28 LPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACH-------PS-STPPEEDLILGDIRETLP--ALARFGAGAALA   97 (160)
T ss_dssp             --S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S--------GG-G---GGGEEES-HHHHHH--HHHHH-S-EEEE
T ss_pred             CCCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccC-------CC-CCCchHheeeccHHHHhH--HHHhcCCceEEE
Confidence            4467999999999877666554 556899999542211       00 001113467777644211  111123445556


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      .+-...++--.+......+-.-+..+|.|||+++-.
T Consensus        98 HaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~  133 (160)
T PF12692_consen   98 HADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSG  133 (160)
T ss_dssp             EE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEES
T ss_pred             EeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeC
Confidence            555555541111112333445677889999998854

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=90.98  E-value=0.37  Score=41.62  Aligned_cols=67  Identities=13%  Similarity=0.027  Sum_probs=47.5

Q ss_pred             EEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEecc
Q 025775           35 VCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQ  113 (248)
Q Consensus        35 VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~  113 (248)
                      |+|+-||.|+....+...+..-+.++|+++.+++.-+..+..       ..+++|+.+.....     -..+|+++...
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~-------~~~~~Di~~~~~~~-----~~~~dvl~gg~   67 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN-------KVPFGDITKISPSD-----IPDFDILLGGF   67 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC-------CCCccChhhhhhhh-----CCCcCEEEecC
Confidence            689999999999999888886778999999988766554432       24567776543321     23578886643

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=90.88  E-value=0.42  Score=39.75  Aligned_cols=59  Identities=5%  Similarity=0.035  Sum_probs=38.8

Q ss_pred             hHHHHHHHHHhcCC-CCeEEEEcCCCCccHhHHHHc---------CCCeEEEEeCChHHHHHHHHHHHh
Q 025775           18 EFAKTALIKIYSHP-YVTVCDLYCGAGVDVDKWETA---------LIANYIGIDVATSGIGEARDTWEN   76 (248)
Q Consensus        18 ~~~~~~li~~~~~~-~~~VLDlGcG~G~~~~~l~~~---------~~~~v~giDis~~~l~~a~~~~~~   76 (248)
                      +|+...+.....+. ..+|+|+|.|+|.++..++..         ...+++-+++|+.+.+..++++..
T Consensus         4 ~~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen    4 RWIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             HHHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             HHHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            44444443333332 479999999999988777653         124899999999998888877654

; PDB: 4F3N_A 1ZKD_B.

>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=90.70  E-value=9.9  Score=32.55  Aligned_cols=111  Identities=14%  Similarity=0.125  Sum_probs=75.5

Q ss_pred             CCeEEEEcCCCCccHhHHHHcCC--CeEEEEeCChHHHHHHHHHHHhcCC--CceEEEEEcCCCCCchhhhhcc---cCC
Q 025775           32 YVTVCDLYCGAGVDVDKWETALI--ANYIGIDVATSGIGEARDTWENQRK--NFIAEFFEADPCAENFETQMQE---KAN  104 (248)
Q Consensus        32 ~~~VLDlGcG~G~~~~~l~~~~~--~~v~giDis~~~l~~a~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~---~~~  104 (248)
                      -..|+-||||-=  +..+.-...  ..|.-+|. |+.++.-++.+.+.+.  ..+..++..|+.+.+....+..   ...
T Consensus        93 ~~qvViLgaGLD--TRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~  169 (297)
T COG3315          93 IRQVVILGAGLD--TRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS  169 (297)
T ss_pred             ccEEEEeccccc--cceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence            367999999853  333322222  25666663 5556665566655431  2358899999986665544432   123


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      .--++++-+.+.|  .+.+...+++..|.....||..++...+
T Consensus       170 ~pt~~iaEGLl~Y--L~~~~v~~ll~~I~~~~~~gS~~~~~~~  210 (297)
T COG3315         170 RPTLWIAEGLLMY--LPEEAVDRLLSRIAALSAPGSRVAFDYS  210 (297)
T ss_pred             CCeEEEecccccc--CCHHHHHHHHHHHHHhCCCCceEEEecc
Confidence            4457788888888  6788999999999999999999998865

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=90.56  E-value=0.93  Score=39.81  Aligned_cols=52  Identities=15%  Similarity=0.052  Sum_probs=37.0

Q ss_pred             HHHHHHHhcC--CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHH
Q 025775           21 KTALIKIYSH--PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARD   72 (248)
Q Consensus        21 ~~~li~~~~~--~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~   72 (248)
                      .+.||.....  +-..|.|+|.|.|+++..+.-...-.|.+||-|....+.|+.
T Consensus       141 lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  141 LSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             HHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence            3445554433  556899999999998877755533489999999777666654

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=90.22  E-value=2.8  Score=35.73  Aligned_cols=98  Identities=17%  Similarity=0.230  Sum_probs=58.5

Q ss_pred             cCCCCeEEEEcCCC-CccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhh-cccCCce
Q 025775           29 SHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM-QEKANQA  106 (248)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~f  106 (248)
                      +.++.+||..|||. |..+..++.....++++++.++...+.+++.    +    +..+..+ .+......+ ......+
T Consensus       163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~----g----~~~~~~~-~~~~~~~~~~~~~~~~~  233 (338)
T cd08254         163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKEL----G----ADEVLNS-LDDSPKDKKAAGLGGGF  233 (338)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh----C----CCEEEcC-CCcCHHHHHHHhcCCCc
Confidence            44778899988763 6666666665334799999999888777442    1    1111111 111111111 1134579


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      |+|+.....          ...+..+.+.|+++|.++..
T Consensus       234 D~vid~~g~----------~~~~~~~~~~l~~~G~~v~~  262 (338)
T cd08254         234 DVIFDFVGT----------QPTFEDAQKAVKPGGRIVVV  262 (338)
T ss_pred             eEEEECCCC----------HHHHHHHHHHhhcCCEEEEE
Confidence            988653211          23566778899999999876

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=90.14  E-value=1.5  Score=38.25  Aligned_cols=59  Identities=10%  Similarity=0.041  Sum_probs=41.9

Q ss_pred             hHHHHHHHHHhcCCCCeEEEEcCCCCccHhHHHHc---------CCCeEEEEeCChHHHHHHHHHHHh
Q 025775           18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA---------LIANYIGIDVATSGIGEARDTWEN   76 (248)
Q Consensus        18 ~~~~~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~---------~~~~v~giDis~~~l~~a~~~~~~   76 (248)
                      .|+...+-+.-.++...++|||.|+|.++..+++.         ...++.-+++|++..+.-++.++.
T Consensus        64 ~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~  131 (370)
T COG1565          64 EQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA  131 (370)
T ss_pred             HHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence            44443333333445678999999999988777653         245899999999998877766554

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=89.88  E-value=3  Score=36.89  Aligned_cols=120  Identities=16%  Similarity=0.060  Sum_probs=76.4

Q ss_pred             hHHHHHHHHHhcCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHH-------hcCC-CceEEEEEc
Q 025775           18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWE-------NQRK-NFIAEFFEA   88 (248)
Q Consensus        18 ~~~~~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~-------~~~~-~~~~~~~~~   88 (248)
                      +++.+..-+.-+.+++.-.|+|+|-|+.....+.. +...-+|+++....-+.|.....       -.+. ..++..+++
T Consensus       179 ~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~g  258 (419)
T KOG3924|consen  179 EQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHG  258 (419)
T ss_pred             HHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeeccc
Confidence            55555555555678999999999999988777654 44566788877665444433211       1111 345788888


Q ss_pred             CCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775           89 DPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus        89 d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +.........+   ....++|+++.+.   | +++...+. .++..-+++|-.++-+
T Consensus       259 sf~~~~~v~eI---~~eatvi~vNN~~---F-dp~L~lr~-~eil~~ck~gtrIiS~  307 (419)
T KOG3924|consen  259 SFLDPKRVTEI---QTEATVIFVNNVA---F-DPELKLRS-KEILQKCKDGTRIISS  307 (419)
T ss_pred             ccCCHHHHHHH---hhcceEEEEeccc---C-CHHHHHhh-HHHHhhCCCcceEecc
Confidence            88765543322   4567888776632   2 24433333 3788888999988866

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=89.24  E-value=1.6  Score=39.57  Aligned_cols=112  Identities=13%  Similarity=0.010  Sum_probs=68.2

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhc---ccCCce
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ---EKANQA  106 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---~~~~~f  106 (248)
                      .+..+|-+|-|.|++...+... +...++++.++|.|++.|.+.+.-... .+......|-  .++.....   ..+..|
T Consensus       295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dG--l~~~~~~~k~~~~~~~~  371 (482)
T KOG2352|consen  295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADG--LDFLQRTAKSQQEDICP  371 (482)
T ss_pred             ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhc--hHHHHHHhhccccccCC
Confidence            4567888999999888777554 556999999999999999876421100 0011122221  11111110   134578


Q ss_pred             eEEEecc---chhhhcCCHH--HHHHHHHHHhccccCCcEEEEE
Q 025775          107 DLVCCFQ---HLQMCFETEE--RARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       107 D~V~~~~---~l~~~~~~~~--~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      |++...-   -.|.+-.+..  -...++..+...|.|-|.|++-
T Consensus       372 dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~in  415 (482)
T KOG2352|consen  372 DVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIIN  415 (482)
T ss_pred             cEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEE
Confidence            8875421   1232212222  3578999999999999999887

>PTZ00357 methyltransferase; Provisional

Probab=89.16  E-value=1.4  Score=41.75  Aligned_cols=107  Identities=18%  Similarity=0.187  Sum_probs=66.4

Q ss_pred             CeEEEEcCCCCccHhHHHHc----CC-CeEEEEeCChHHHHHHHHHHHh-cCC-------CceEEEEEcCCCCCchhh--
Q 025775           33 VTVCDLYCGAGVDVDKWETA----LI-ANYIGIDVATSGIGEARDTWEN-QRK-------NFIAEFFEADPCAENFET--   97 (248)
Q Consensus        33 ~~VLDlGcG~G~~~~~l~~~----~~-~~v~giDis~~~l~~a~~~~~~-~~~-------~~~~~~~~~d~~~~~~~~--   97 (248)
                      ..|+=+|+|.|-+.......    +. -++++++-++.++.....+... ..+       ..+++++..|+.......  
T Consensus       702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~  781 (1072)
T PTZ00357        702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN  781 (1072)
T ss_pred             EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence            36899999999877655443    22 2899999997755444443311 122       345899999998754311  


Q ss_pred             -h--hcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccC----CcE
Q 025775           98 -Q--MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKP----GGY  141 (248)
Q Consensus        98 -~--~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp----gG~  141 (248)
                       .  .+..-+++|+|++-.  -..|..-+--.+.|.-+.+.||+    +|+
T Consensus       782 ~s~~~P~~~gKaDIVVSEL--LGSFGDNELSPECLDGaQrfLKdiqhsdGI  830 (1072)
T PTZ00357        782 GSLTLPADFGLCDLIVSEL--LGSLGDNELSPECLEAFHAQLEDIQLSRGI  830 (1072)
T ss_pred             ccccccccccccceehHhh--hcccccccCCHHHHHHHHHhhhhhcccccc
Confidence             0  001124799998732  11344455556777777778776    776

>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences

Probab=88.56  E-value=0.57  Score=46.91  Aligned_cols=102  Identities=13%  Similarity=-0.024  Sum_probs=59.2

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      .+.++||+|.|.-.=...+.... ..++.+|+-|-+-       ....+.....|+++|-......     ...++|.++
T Consensus       822 ~~~~~lDLGTGPE~RiLsliP~~-~pvtmvD~RP~ae-------~m~~w~t~T~y~~~DYl~~~~~-----~~~~~D~vt  888 (1289)
T PF06016_consen  822 DPDHWLDLGTGPECRILSLIPPD-TPVTMVDTRPFAE-------PMNCWNTQTQYIQADYLSDAWW-----NGTPFDAVT  888 (1289)
T ss_dssp             CC-CEEEET--TT-CHHHCS-TT-SEEEEEESS--SS-------SCCCCSTTEEEEES-TTSCCGG-----CC---SEEE
T ss_pred             CcceEEEccCCccceeeeccCCC-CceEEEecCCccc-------ccchhhhcceeeeeccccceeE-----ecCCCCEEE
Confidence            36789999999863222222222 3799999866431       1122334578999998877664     356899999


Q ss_pred             eccchhhhc-CCHHHHHHHHHHHhccccCCcE--EEEE
Q 025775          111 CFQHLQMCF-ETEERARRLLQNVSSLLKPGGY--FLGI  145 (248)
Q Consensus       111 ~~~~l~~~~-~~~~~~~~~l~~~~~~LkpgG~--~i~~  145 (248)
                      |.+++.-.+ ...-.+.+.++++.+.+++.|.  +++.
T Consensus       889 ailSLGAAaA~a~~tl~~~l~~~l~~~~~~~~~~l~lQ  926 (1289)
T PF06016_consen  889 AILSLGAAAASANVTLDAGLQQFLSQCVQANVKRLWLQ  926 (1289)
T ss_dssp             ECTCHHHHHHHCT--HHHHHHHHHHHHHCTT-SEEEEE
T ss_pred             EEeeehhhhhcCCCcHHHHHHHHHHHHHhCCccEEEEE
Confidence            999876432 2233578888999888888774  5555

The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=88.43  E-value=2.4  Score=36.76  Aligned_cols=92  Identities=7%  Similarity=-0.010  Sum_probs=55.2

Q ss_pred             cCCCCeEEEEcCCC-CccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCc
Q 025775           29 SHPYVTVCDLYCGA-GVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (248)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (248)
                      ..++.+||=+|||. |..+..++..  +..+++++|.++.-++.++.    .+    .... .+    .+.     ....
T Consensus       161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~----~~~~-~~----~~~-----~~~g  222 (341)
T cd08237         161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----AD----ETYL-ID----DIP-----EDLA  222 (341)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cC----ceee-hh----hhh-----hccC
Confidence            35789999999986 4444454443  44589999999887777653    11    1111 11    111     1124


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +|+|+-.-.-.       .....+....+.|++||.+++.
T Consensus       223 ~d~viD~~G~~-------~~~~~~~~~~~~l~~~G~iv~~  255 (341)
T cd08237         223 VDHAFECVGGR-------GSQSAINQIIDYIRPQGTIGLM  255 (341)
T ss_pred             CcEEEECCCCC-------ccHHHHHHHHHhCcCCcEEEEE
Confidence            88886433210       0234567777899999998765

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=88.22  E-value=7.6  Score=36.72  Aligned_cols=104  Identities=12%  Similarity=0.043  Sum_probs=65.9

Q ss_pred             CeEEEEcCCC-CccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEe
Q 025775           33 VTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (248)
Q Consensus        33 ~~VLDlGcG~-G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~  111 (248)
                      .+|+=+|+|. |..+..........++.+|.+++.++.+++.    +    ...+.+|+++.+..+..  .-.+.|++++
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~----g----~~v~~GDat~~~~L~~a--gi~~A~~vv~  470 (601)
T PRK03659        401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY----G----YKVYYGDATQLELLRAA--GAEKAEAIVI  470 (601)
T ss_pred             CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC----C----CeEEEeeCCCHHHHHhc--CCccCCEEEE
Confidence            5677788776 5444443333333899999999998877642    2    56789999886654322  2356787766


Q ss_pred             ccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHH
Q 025775          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIW  153 (248)
Q Consensus       112 ~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~  153 (248)
                      ..      .+.+....+... .+.+.|...++....+.....
T Consensus       471 ~~------~d~~~n~~i~~~-~r~~~p~~~IiaRa~~~~~~~  505 (601)
T PRK03659        471 TC------NEPEDTMKIVEL-CQQHFPHLHILARARGRVEAH  505 (601)
T ss_pred             Ee------CCHHHHHHHHHH-HHHHCCCCeEEEEeCCHHHHH
Confidence            43      334444444444 455789988888776664433

>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=88.12  E-value=2.3  Score=34.70  Aligned_cols=64  Identities=16%  Similarity=-0.011  Sum_probs=47.5

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE   96 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   96 (248)
                      ..+-|.+||.|.|+.+..+..++.+++..+++++..+.-.+-..+...  .+....+.|+....+.
T Consensus        50 ~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~--~~~~IHh~D~LR~~I~  113 (326)
T KOG0821|consen   50 TNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP--GKLRIHHGDVLRFKIE  113 (326)
T ss_pred             ccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC--cceEEeccccceehHH
Confidence            356799999999999999998888899999999988765544433222  3466777887654443

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=88.10  E-value=5.9  Score=37.63  Aligned_cols=102  Identities=14%  Similarity=0.083  Sum_probs=65.7

Q ss_pred             CCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           32 YVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        32 ~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      ..+|+=+|||. |..+...... +. .++.+|.+++.++.+++.    +    ...+.+|.++.+.....  .-.+.|++
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~----g----~~v~~GDat~~~~L~~a--gi~~A~~v  468 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRKF----G----MKVFYGDATRMDLLESA--GAAKAEVL  468 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhc----C----CeEEEEeCCCHHHHHhc--CCCcCCEE
Confidence            46789999996 6555444443 44 899999999998887642    2    56799999887654321  23578877


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhH
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST  151 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~  151 (248)
                      ++..      .+.+....+.. ..+.+.|+-.++....+...
T Consensus       469 vv~~------~d~~~n~~i~~-~ar~~~p~~~iiaRa~d~~~  503 (621)
T PRK03562        469 INAI------DDPQTSLQLVE-LVKEHFPHLQIIARARDVDH  503 (621)
T ss_pred             EEEe------CCHHHHHHHHH-HHHHhCCCCeEEEEECCHHH
Confidence            6643      33443333334 44456788777777666544

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=88.04  E-value=1.4  Score=38.29  Aligned_cols=72  Identities=14%  Similarity=0.146  Sum_probs=51.5

Q ss_pred             CCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCC-ceeEEE
Q 025775           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN-QADLVC  110 (248)
Q Consensus        32 ~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~fD~V~  110 (248)
                      ..+++|+-||.|+....+...++.-+.++|+++.+++.-+..+..      ..++..|+........    .. .+|+++
T Consensus         3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~----~~~~~Dvli   72 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEAL----RKSDVDVLI   72 (328)
T ss_pred             CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhc----cccCCCEEE
Confidence            457999999999999989888887899999999988765555432      3456666654332211    12 788887


Q ss_pred             ecc
Q 025775          111 CFQ  113 (248)
Q Consensus       111 ~~~  113 (248)
                      ...
T Consensus        73 gGp   75 (328)
T COG0270          73 GGP   75 (328)
T ss_pred             eCC
Confidence            754

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=87.56  E-value=3.5  Score=29.91  Aligned_cols=86  Identities=15%  Similarity=0.164  Sum_probs=53.9

Q ss_pred             CeEEEEcCCCCccHh-HHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEe
Q 025775           33 VTVCDLYCGAGVDVD-KWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (248)
Q Consensus        33 ~~VLDlGcG~G~~~~-~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~  111 (248)
                      .+|.|+|-|.=.... .++..++ .++++||++.   .|    . .+    +.+..-|++++.+.-     -...|+|.+
T Consensus        15 gkVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~---~a----~-~g----~~~v~DDitnP~~~i-----Y~~A~lIYS   76 (129)
T COG1255          15 GKVVEVGIGFFLDVAKRLAERGF-DVLATDINEK---TA----P-EG----LRFVVDDITNPNISI-----YEGADLIYS   76 (129)
T ss_pred             CcEEEEccchHHHHHHHHHHcCC-cEEEEecccc---cC----c-cc----ceEEEccCCCccHHH-----hhCccceee
Confidence            489999998754444 3444466 8999999876   11    1 23    789999998877631     235677765


Q ss_pred             ccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       112 ~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      .-       +...+...+-.+.+.++.  .+++.
T Consensus        77 iR-------pppEl~~~ildva~aVga--~l~I~  101 (129)
T COG1255          77 IR-------PPPELQSAILDVAKAVGA--PLYIK  101 (129)
T ss_pred             cC-------CCHHHHHHHHHHHHhhCC--CEEEE
Confidence            43       444455555555555443  44444

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=86.16  E-value=4.6  Score=35.18  Aligned_cols=98  Identities=12%  Similarity=0.060  Sum_probs=56.1

Q ss_pred             cCCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc--cCC
Q 025775           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (248)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~  104 (248)
                      +.++.+||=.|||. |..+..+++. +...++++|.++.-++.+++.    +.   ..++  +..+.+....+..  ...
T Consensus       174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~----Ga---~~~i--~~~~~~~~~~i~~~~~~~  244 (358)
T TIGR03451       174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF----GA---THTV--NSSGTDPVEAIRALTGGF  244 (358)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CC---ceEE--cCCCcCHHHHHHHHhCCC
Confidence            45788999998864 4444555554 444699999999888777532    10   1122  2222222211111  123


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      .+|+|+-...      ..    ..+....+.+++||.++..
T Consensus       245 g~d~vid~~g------~~----~~~~~~~~~~~~~G~iv~~  275 (358)
T TIGR03451       245 GADVVIDAVG------RP----ETYKQAFYARDLAGTVVLV  275 (358)
T ss_pred             CCCEEEECCC------CH----HHHHHHHHHhccCCEEEEE
Confidence            5898864321      11    2345556788999998876

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=85.96  E-value=16  Score=29.21  Aligned_cols=33  Identities=15%  Similarity=0.015  Sum_probs=24.5

Q ss_pred             CCCeEEEEcCCC-CccH-hHHHHcCCCeEEEEeCC
Q 025775           31 PYVTVCDLYCGA-GVDV-DKWETALIANYIGIDVA   63 (248)
Q Consensus        31 ~~~~VLDlGcG~-G~~~-~~l~~~~~~~v~giDis   63 (248)
                      .+.+||=+|||. |..+ ..++..+.++++.+|.+
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            468899999995 5433 44455688899999977

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=85.93  E-value=1.9  Score=38.62  Aligned_cols=85  Identities=13%  Similarity=0.048  Sum_probs=53.0

Q ss_pred             CCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           31 PYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        31 ~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      ++.+|+=+|||+ |..+...+.. +. +|+.+|+++.-++.|+..    +    +...  +.     .+.    -...|+
T Consensus       201 ~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~~----G----~~~~--~~-----~e~----v~~aDV  260 (413)
T cd00401         201 AGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAME----G----YEVM--TM-----EEA----VKEGDI  260 (413)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHhc----C----CEEc--cH-----HHH----HcCCCE
Confidence            789999999997 5444444444 55 899999998877666532    2    1111  11     111    135798


Q ss_pred             EEeccchhhhcCCHHHHHHHHH-HHhccccCCcEEEEE
Q 025775          109 VCCFQHLQMCFETEERARRLLQ-NVSSLLKPGGYFLGI  145 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~-~~~~~LkpgG~~i~~  145 (248)
                      |+..-.      +    ..++. ...+.+++||+++..
T Consensus       261 VI~atG------~----~~~i~~~~l~~mk~Ggilvnv  288 (413)
T cd00401         261 FVTTTG------N----KDIITGEHFEQMKDGAIVCNI  288 (413)
T ss_pred             EEECCC------C----HHHHHHHHHhcCCCCcEEEEe
Confidence            876331      1    12333 347889999999776

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=85.77  E-value=7.5  Score=35.87  Aligned_cols=114  Identities=13%  Similarity=0.158  Sum_probs=64.3

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc-----CCCeEEEEeCChHHHHHHHHHHHhcCCCc-eEEEEEcCCCCC-chhhhhcccC
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWENQRKNF-IAEFFEADPCAE-NFETQMQEKA  103 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~-----~~~~v~giDis~~~l~~a~~~~~~~~~~~-~~~~~~~d~~~~-~~~~~~~~~~  103 (248)
                      |+..|.|..||+|+++......     ....++|.+..+++...|+....-++... ......+|-... +..     ..
T Consensus       217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~-----~~  291 (501)
T TIGR00497       217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWE-----NE  291 (501)
T ss_pred             CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCcccc-----cc
Confidence            6678999999999988654321     12369999999999988876532222100 112223332221 110     13


Q ss_pred             CceeEEEeccch--hh------------------hcC-CHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          104 NQADLVCCFQHL--QM------------------CFE-TEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       104 ~~fD~V~~~~~l--~~------------------~~~-~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      .+||.|++.--.  .+                  ++. ....-..++..+...|++||...+..|+.
T Consensus       292 ~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~~g  358 (501)
T TIGR00497       292 NGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCFPG  358 (501)
T ss_pred             ccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEecCC
Confidence            457776653211  00                  000 01123467778888999999877665543

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=85.77  E-value=2.8  Score=35.43  Aligned_cols=53  Identities=25%  Similarity=0.302  Sum_probs=43.3

Q ss_pred             HHHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHh
Q 025775           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN   76 (248)
Q Consensus        23 ~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~   76 (248)
                      .+|..+..++..|||.-+|+|..+......+- ..+|+|+++..++.+..|...
T Consensus       214 r~i~~~s~~~diVlDpf~GsGtt~~aa~~~~r-~~ig~e~~~~y~~~~~~r~~~  266 (302)
T COG0863         214 RLIRDYSFPGDIVLDPFAGSGTTGIAAKNLGR-RFIGIEINPEYVEVALKRLQE  266 (302)
T ss_pred             HHHHhcCCCCCEEeecCCCCChHHHHHHHcCC-ceEEEecCHHHHHHHHHHHHh
Confidence            34555778999999999999987666555454 899999999999999998865

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=85.34  E-value=2  Score=39.66  Aligned_cols=101  Identities=18%  Similarity=0.208  Sum_probs=57.3

Q ss_pred             CCCeEEEEcCCC-CccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC-------------Cchh
Q 025775           31 PYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-------------ENFE   96 (248)
Q Consensus        31 ~~~~VLDlGcG~-G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-------------~~~~   96 (248)
                      ++.+|+=+|||. |..+..++..-...++.+|.++..++.++..    +    ..++..|..+             .++.
T Consensus       163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~l----G----a~~v~v~~~e~g~~~~gYa~~~s~~~~  234 (511)
T TIGR00561       163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSM----G----AEFLELDFKEEGGSGDGYAKVMSEEFI  234 (511)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----C----CeEEeccccccccccccceeecCHHHH
Confidence            568999999997 4444444444233799999999987777652    1    2333333211             0111


Q ss_pred             h----hhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEE
Q 025775           97 T----QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (248)
Q Consensus        97 ~----~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i  143 (248)
                      .    .+.+.-..+|+|++...+..    .+...-+.+++.+.+|||+.++
T Consensus       235 ~~~~~~~~e~~~~~DIVI~TalipG----~~aP~Lit~emv~~MKpGsvIV  281 (511)
T TIGR00561       235 AAEMELFAAQAKEVDIIITTALIPG----KPAPKLITEEMVDSMKAGSVIV  281 (511)
T ss_pred             HHHHHHHHHHhCCCCEEEECcccCC----CCCCeeehHHHHhhCCCCCEEE
Confidence            0    01112356999977653332    1111224556677788888766

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=84.80  E-value=7.8  Score=32.49  Aligned_cols=69  Identities=16%  Similarity=0.100  Sum_probs=43.9

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcC------CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETAL------IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ   98 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~------~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   98 (248)
                      +.+...++|+|||.|.++..++..-      ...++.||-...-. .+..+.........+.-+..|+.+.++...
T Consensus        16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~dl~l~~~   90 (259)
T PF05206_consen   16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKDLDLSKL   90 (259)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeeccchhhc
Confidence            3577899999999999887776542      34788999755322 333333332211246777888877776543

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=84.50  E-value=9.4  Score=31.07  Aligned_cols=97  Identities=24%  Similarity=0.218  Sum_probs=57.2

Q ss_pred             CCCCeEEEEcCCC-CccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhh-cccCCcee
Q 025775           30 HPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM-QEKANQAD  107 (248)
Q Consensus        30 ~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~fD  107 (248)
                      .++.+||-.|+|. |..+..++.....++++++.++...+.++...  .     ...+  +.........+ ....+.+|
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g--~-----~~~~--~~~~~~~~~~~~~~~~~~~d  203 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELG--A-----DHVI--DYKEEDLEEELRLTGGGGAD  203 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhC--C-----ceec--cCCcCCHHHHHHHhcCCCCC
Confidence            5788999999986 55555555543358999999987776664321  0     1111  11111111110 11245799


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +|+.....      .    ..+..+.+.|+++|.++..
T Consensus       204 ~vi~~~~~------~----~~~~~~~~~l~~~G~~v~~  231 (271)
T cd05188         204 VVIDAVGG------P----ETLAQALRLLRPGGRIVVV  231 (271)
T ss_pred             EEEECCCC------H----HHHHHHHHhcccCCEEEEE
Confidence            98754321      1    3456667788999998876

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=83.96  E-value=5.8  Score=34.77  Aligned_cols=98  Identities=15%  Similarity=0.161  Sum_probs=56.0

Q ss_pred             cCCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc-cCCc
Q 025775           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ  105 (248)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~  105 (248)
                      +.++.+||=.|+|. |..+..+++. +...|+++|.++.-++.+++.    +.   ..++  +..+.++.+.+.. ..+.
T Consensus       189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~----Ga---~~~i--~~~~~~~~~~i~~~~~~g  259 (371)
T cd08281         189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL----GA---TATV--NAGDPNAVEQVRELTGGG  259 (371)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc----CC---ceEe--CCCchhHHHHHHHHhCCC
Confidence            45788888899874 4444555554 444799999999888777542    10   1111  1122222211111 1236


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +|+|+-...      .    ...+....+.|+++|.++..
T Consensus       260 ~d~vid~~G------~----~~~~~~~~~~l~~~G~iv~~  289 (371)
T cd08281         260 VDYAFEMAG------S----VPALETAYEITRRGGTTVTA  289 (371)
T ss_pred             CCEEEECCC------C----hHHHHHHHHHHhcCCEEEEE
Confidence            898864321      1    12455566788999998865

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=83.75  E-value=21  Score=29.69  Aligned_cols=108  Identities=12%  Similarity=0.015  Sum_probs=56.3

Q ss_pred             CCCeEEEEcCCCCccHhHHHH---c---CCCeEEEEeCChH--------------------------HHHHHHHHHHhcC
Q 025775           31 PYVTVCDLYCGAGVDVDKWET---A---LIANYIGIDVATS--------------------------GIGEARDTWENQR   78 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~---~---~~~~v~giDis~~--------------------------~l~~a~~~~~~~~   78 (248)
                      -...|+|+||-.|+.+..++.   .   ...+++++|.=..                          .++..++.+...+
T Consensus        74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g  153 (248)
T PF05711_consen   74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG  153 (248)
T ss_dssp             S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred             CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence            346799999999986654432   1   2347888883211                          2222332222211


Q ss_pred             -CCceEEEEEcCCCCCchhhhhcc-cCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775           79 -KNFIAEFFEADPCAENFETQMQE-KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus        79 -~~~~~~~~~~d~~~~~~~~~~~~-~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                       ...++.++.+.+.+     .++. +..++-++.+-.      .--++...+|+.+...|.|||++++.-.+.
T Consensus       154 l~~~~v~~vkG~F~d-----TLp~~p~~~IAll~lD~------DlYesT~~aLe~lyprl~~GGiIi~DDY~~  215 (248)
T PF05711_consen  154 LLDDNVRFVKGWFPD-----TLPDAPIERIALLHLDC------DLYESTKDALEFLYPRLSPGGIIIFDDYGH  215 (248)
T ss_dssp             TSSTTEEEEES-HHH-----HCCC-TT--EEEEEE---------SHHHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred             CCcccEEEECCcchh-----hhccCCCccEEEEEEec------cchHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence             12357888887522     2211 223343332222      335568889999999999999999985444

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=83.38  E-value=6.1  Score=30.69  Aligned_cols=63  Identities=19%  Similarity=0.121  Sum_probs=40.2

Q ss_pred             EEEcCCCCCchhhhhcccCCceeEEEeccchhh---------hcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775           85 FFEADPCAENFETQMQEKANQADLVCCFQHLQM---------CFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus        85 ~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~---------~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      ....|++...-  .......+||.|+-++-...         +-.+..-+..+++.+..+|+++|.+.++..++
T Consensus        57 ~~~VDat~l~~--~~~~~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~  128 (166)
T PF10354_consen   57 LHGVDATKLHK--HFRLKNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDG  128 (166)
T ss_pred             ccCCCCCcccc--cccccCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            45666655332  22224678999977652111         00112346789999999999999999996665

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=83.31  E-value=3.2  Score=36.82  Aligned_cols=45  Identities=9%  Similarity=-0.056  Sum_probs=33.7

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHH
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTW   74 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~   74 (248)
                      +.|+++||-|++|....+ .++..++++|+++|+||..+...+-+.
T Consensus        33 i~~~d~vl~ItSaG~N~L-~yL~~~P~~I~aVDlNp~Q~aLleLKl   77 (380)
T PF11899_consen   33 IGPDDRVLTITSAGCNAL-DYLLAGPKRIHAVDLNPAQNALLELKL   77 (380)
T ss_pred             CCCCCeEEEEccCCchHH-HHHhcCCceEEEEeCCHHHHHHHHHHH
Confidence            348899999987665544 445667779999999999887655443

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=83.11  E-value=13  Score=34.70  Aligned_cols=100  Identities=10%  Similarity=0.012  Sum_probs=60.1

Q ss_pred             CeEEEEcCCC-CccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEe
Q 025775           33 VTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (248)
Q Consensus        33 ~~VLDlGcG~-G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~  111 (248)
                      .+|+=+|||. |..+.........+++.+|.+++.++.+++.    +    ...+.+|..+....+..  .-++.|.+++
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~----g----~~~i~GD~~~~~~L~~a--~i~~a~~viv  487 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER----G----IRAVLGNAANEEIMQLA--HLDCARWLLL  487 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC----C----CeEEEcCCCCHHHHHhc--CccccCEEEE
Confidence            5677788886 5444433333333899999999988877642    2    66899999886543221  2357786654


Q ss_pred             ccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       112 ~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      ..      .+.+........+ +.+.|+..++....+.
T Consensus       488 ~~------~~~~~~~~iv~~~-~~~~~~~~iiar~~~~  518 (558)
T PRK10669        488 TI------PNGYEAGEIVASA-REKRPDIEIIARAHYD  518 (558)
T ss_pred             Ec------CChHHHHHHHHHH-HHHCCCCeEEEEECCH
Confidence            22      1222222333433 4457888887776554

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=83.11  E-value=2.3  Score=30.90  Aligned_cols=84  Identities=21%  Similarity=0.289  Sum_probs=51.1

Q ss_pred             CccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhccc--CCceeEEEeccchhhhcC
Q 025775           43 GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK--ANQADLVCCFQHLQMCFE  120 (248)
Q Consensus        43 G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~fD~V~~~~~l~~~~~  120 (248)
                      |..+..+++....+++++|.++.-++.+++.-.       ..++..  .+.++.+.+.+.  ...+|+|+-...      
T Consensus         3 G~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga-------~~~~~~--~~~~~~~~i~~~~~~~~~d~vid~~g------   67 (130)
T PF00107_consen    3 GLMAIQLAKAMGAKVIATDRSEEKLELAKELGA-------DHVIDY--SDDDFVEQIRELTGGRGVDVVIDCVG------   67 (130)
T ss_dssp             HHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTE-------SEEEET--TTSSHHHHHHHHTTTSSEEEEEESSS------
T ss_pred             HHHHHHHHHHcCCEEEEEECCHHHHHHHHhhcc-------cccccc--cccccccccccccccccceEEEEecC------
Confidence            444555555433799999999998888875321       122222  222233333222  247999865432      


Q ss_pred             CHHHHHHHHHHHhccccCCcEEEEE
Q 025775          121 TEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       121 ~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      .    ...++....+|+++|.+++.
T Consensus        68 ~----~~~~~~~~~~l~~~G~~v~v   88 (130)
T PF00107_consen   68 S----GDTLQEAIKLLRPGGRIVVV   88 (130)
T ss_dssp             S----HHHHHHHHHHEEEEEEEEEE
T ss_pred             c----HHHHHHHHHHhccCCEEEEE
Confidence            1    24677777899999999987

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>cd08230 glucose_DH Glucose dehydrogenase

Probab=82.63  E-value=8.4  Score=33.46  Aligned_cols=94  Identities=11%  Similarity=0.026  Sum_probs=53.8

Q ss_pred             CCCCeEEEEcCCC-CccHhHHHHcCCCeEEEEeC---ChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCc
Q 025775           30 HPYVTVCDLYCGA-GVDVDKWETALIANYIGIDV---ATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (248)
Q Consensus        30 ~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~giDi---s~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (248)
                      .++.+||=+|+|. |..+..+++....++++++.   ++.-++.+++    .+    +..+  +..+.+... .. ....
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~----~G----a~~v--~~~~~~~~~-~~-~~~~  238 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEE----LG----ATYV--NSSKTPVAE-VK-LVGE  238 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH----cC----CEEe--cCCccchhh-hh-hcCC
Confidence            4788999999875 55555555543337999987   5555555542    22    2222  222222111 11 1346


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +|+|+-...      .    ...+....+.|++||.+++.
T Consensus       239 ~d~vid~~g------~----~~~~~~~~~~l~~~G~~v~~  268 (355)
T cd08230         239 FDLIIEATG------V----PPLAFEALPALAPNGVVILF  268 (355)
T ss_pred             CCEEEECcC------C----HHHHHHHHHHccCCcEEEEE
Confidence            898865432      1    12466677889999998765

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PLN02740 Alcohol dehydrogenase-like

Probab=82.60  E-value=8.4  Score=33.94  Aligned_cols=100  Identities=15%  Similarity=0.211  Sum_probs=55.3

Q ss_pred             cCCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc-cCCc
Q 025775           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ  105 (248)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~  105 (248)
                      +.++.+||=+|||. |..+..+++. +...|+++|.+++-++.+++.    +.   ..++...-.+.++.+.+.. ..+.
T Consensus       196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga---~~~i~~~~~~~~~~~~v~~~~~~g  268 (381)
T PLN02740        196 VQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM----GI---TDFINPKDSDKPVHERIREMTGGG  268 (381)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc----CC---cEEEecccccchHHHHHHHHhCCC
Confidence            45788999999875 4444455544 444799999999888877542    11   1122211111112211111 1236


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHhccccCC-cEEEEE
Q 025775          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG-GYFLGI  145 (248)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkpg-G~~i~~  145 (248)
                      +|+|+-...      ..    ..+......+++| |.+++.
T Consensus       269 ~dvvid~~G------~~----~~~~~a~~~~~~g~G~~v~~  299 (381)
T PLN02740        269 VDYSFECAG------NV----EVLREAFLSTHDGWGLTVLL  299 (381)
T ss_pred             CCEEEECCC------Ch----HHHHHHHHhhhcCCCEEEEE
Confidence            898865432      11    2455555677886 887665

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=82.43  E-value=2.8  Score=30.95  Aligned_cols=94  Identities=16%  Similarity=0.216  Sum_probs=47.4

Q ss_pred             CCCeEEEEcCCCCccH-hHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           31 PYVTVCDLYCGAGVDV-DKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~-~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      +..+|.|+|-|.=... ..+...+. .|+++|+.+.   .|.     .+    +.++.-|++++.+.-     =...|+|
T Consensus        13 ~~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~---~a~-----~g----~~~v~DDif~P~l~i-----Y~~a~lI   74 (127)
T PF03686_consen   13 NYGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPR---KAP-----EG----VNFVVDDIFNPNLEI-----YEGADLI   74 (127)
T ss_dssp             -SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S------------S----TTEE---SSS--HHH-----HTTEEEE
T ss_pred             CCCcEEEECcCCCHHHHHHHHHcCC-cEEEEECccc---ccc-----cC----cceeeecccCCCHHH-----hcCCcEE
Confidence            3459999999975444 44444566 9999999987   111     22    668999998877631     2468898


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhH
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST  151 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~  151 (248)
                      .+.-       +..+++..+-++.+.  -|.-+++.....+.
T Consensus        75 YSiR-------PP~El~~~il~lA~~--v~adlii~pL~~e~  107 (127)
T PF03686_consen   75 YSIR-------PPPELQPPILELAKK--VGADLIIRPLGGES  107 (127)
T ss_dssp             EEES---------TTSHHHHHHHHHH--HT-EEEEE-BTTB-
T ss_pred             EEeC-------CChHHhHHHHHHHHH--hCCCEEEECCCCCC
Confidence            7654       333344455555443  35567776555443

; PDB: 2K4M_A.

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=82.37  E-value=8.3  Score=32.89  Aligned_cols=81  Identities=11%  Similarity=0.098  Sum_probs=56.3

Q ss_pred             CCCeEEEEcCCCCc---cHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCc----hhhhhcccC
Q 025775           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN----FETQMQEKA  103 (248)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~~~~  103 (248)
                      .|..||==|.|.|-   .+..+++.+. .+...|+++...++..+.....+   ++....+|+.+..    ....+...-
T Consensus        37 ~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e~  112 (300)
T KOG1201|consen   37 SGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKEV  112 (300)
T ss_pred             cCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHhc
Confidence            57788888888762   1233344455 89999999999988777766543   5889999998732    122333345


Q ss_pred             CceeEEEeccch
Q 025775          104 NQADLVCCFQHL  115 (248)
Q Consensus       104 ~~fD~V~~~~~l  115 (248)
                      +..|+++++.++
T Consensus       113 G~V~ILVNNAGI  124 (300)
T KOG1201|consen  113 GDVDILVNNAGI  124 (300)
T ss_pred             CCceEEEecccc
Confidence            789999887755

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=82.19  E-value=25  Score=28.41  Aligned_cols=33  Identities=15%  Similarity=0.097  Sum_probs=24.8

Q ss_pred             CCCeEEEEcCCC-CccH-hHHHHcCCCeEEEEeCC
Q 025775           31 PYVTVCDLYCGA-GVDV-DKWETALIANYIGIDVA   63 (248)
Q Consensus        31 ~~~~VLDlGcG~-G~~~-~~l~~~~~~~v~giDis   63 (248)
                      ...+|+=+|||. |..+ ..++..+.++++-+|.+
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            568899999994 5443 45555688889999987

>PRK11524 putative methyltransferase; Provisional

Probab=81.91  E-value=1.6  Score=37.02  Aligned_cols=60  Identities=12%  Similarity=0.217  Sum_probs=36.3

Q ss_pred             EEEEEcCCCCCchhhhhcccCCceeEEEecc--ch--hh--h---cC---CHHHHHHHHHHHhccccCCcEEEEEe
Q 025775           83 AEFFEADPCAENFETQMQEKANQADLVCCFQ--HL--QM--C---FE---TEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus        83 ~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~--~l--~~--~---~~---~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      ..++++|+.+.  ...+  +++++|+|++.-  ..  .+  .   +.   ..+.+...+.++.++|||||.+++..
T Consensus         9 ~~i~~gD~~~~--l~~l--~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~   80 (284)
T PRK11524          9 KTIIHGDALTE--LKKI--PSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN   80 (284)
T ss_pred             CEEEeccHHHH--HHhc--ccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence            35677777441  1112  357889888842  11  00  0   00   11235689999999999999998863

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=81.84  E-value=6.3  Score=33.03  Aligned_cols=97  Identities=16%  Similarity=0.066  Sum_probs=54.0

Q ss_pred             CCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775           30 HPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        30 ~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      .++.+||=+|+|. |..+..+++. +...++++|.++.-++.+++.-.       ...+..+-...... ... ....+|
T Consensus       119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga-------~~~i~~~~~~~~~~-~~~-~~~g~d  189 (280)
T TIGR03366       119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGA-------TALAEPEVLAERQG-GLQ-NGRGVD  189 (280)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC-------cEecCchhhHHHHH-HHh-CCCCCC
Confidence            3788999998875 4444445444 55459999999887776654211       01111110000010 010 123589


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +|+-...      .    ...+....+.|+++|.++..
T Consensus       190 ~vid~~G------~----~~~~~~~~~~l~~~G~iv~~  217 (280)
T TIGR03366       190 VALEFSG------A----TAAVRACLESLDVGGTAVLA  217 (280)
T ss_pred             EEEECCC------C----hHHHHHHHHHhcCCCEEEEe
Confidence            8865321      1    23456667789999999875

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=81.55  E-value=11  Score=32.45  Aligned_cols=90  Identities=13%  Similarity=-0.037  Sum_probs=53.0

Q ss_pred             cCCCCeEEEEcCCC-CccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775           29 SHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      ..++.+||=.|+|. |..+..+++..-.++++++.++.-++.+++.    +    +..+ .|..+.        ..+.+|
T Consensus       163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~----G----a~~v-i~~~~~--------~~~~~d  225 (329)
T TIGR02822       163 LPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALAL----G----AASA-GGAYDT--------PPEPLD  225 (329)
T ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHh----C----Ccee-cccccc--------Ccccce
Confidence            45788999999864 4334444444333799999998877776653    1    1111 111110        123577


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +++....       .   ...+....+.|++||.+++.
T Consensus       226 ~~i~~~~-------~---~~~~~~~~~~l~~~G~~v~~  253 (329)
T TIGR02822       226 AAILFAP-------A---GGLVPPALEALDRGGVLAVA  253 (329)
T ss_pred             EEEECCC-------c---HHHHHHHHHhhCCCcEEEEE
Confidence            6543221       1   12566777899999999876

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=81.54  E-value=21  Score=28.55  Aligned_cols=98  Identities=20%  Similarity=0.203  Sum_probs=54.3

Q ss_pred             CCCeEEEEcCCC-Ccc-HhHHHHcCCCeEEEEeCC---hHHHHH---------------HHHHHHhcCCCceEEEEEcCC
Q 025775           31 PYVTVCDLYCGA-GVD-VDKWETALIANYIGIDVA---TSGIGE---------------ARDTWENQRKNFIAEFFEADP   90 (248)
Q Consensus        31 ~~~~VLDlGcG~-G~~-~~~l~~~~~~~v~giDis---~~~l~~---------------a~~~~~~~~~~~~~~~~~~d~   90 (248)
                      ...+|+=+|||. |.. +..++..+.++++-+|.+   +..+..               +++++...+...++.....++
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~~i   99 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDEKI   99 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeeeeC
Confidence            467899999995 433 345556688889999988   443321               122222222223344444454


Q ss_pred             CCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccC
Q 025775           91 CAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKP  138 (248)
Q Consensus        91 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp  138 (248)
                      ....+.+.    -..+|+|+...      ++.+....+.+.+.+.++.
T Consensus       100 ~~~~~~~~----~~~~DlVi~a~------Dn~~~k~~l~~~~~~~~~~  137 (200)
T TIGR02354       100 TEENIDKF----FKDADIVCEAF------DNAEAKAMLVNAVLEKYKD  137 (200)
T ss_pred             CHhHHHHH----hcCCCEEEECC------CCHHHHHHHHHHHHHHcCC
Confidence            43332211    24689887642      4455555666666666654

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=81.46  E-value=9  Score=34.09  Aligned_cols=73  Identities=14%  Similarity=0.062  Sum_probs=47.8

Q ss_pred             CeEEEEcCCC-CccHh-HHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           33 VTVCDLYCGA-GVDVD-KWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        33 ~~VLDlGcG~-G~~~~-~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      .+||=||||. |+... .+++.+..+|+..|-|++..+.+......     +++..+.|+.+.+-...+   -..+|+|+
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~-----~v~~~~vD~~d~~al~~l---i~~~d~VI   73 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG-----KVEALQVDAADVDALVAL---IKDFDLVI   73 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc-----cceeEEecccChHHHHHH---HhcCCEEE
Confidence            5789999976 43332 33444546999999999888777654322     488899999775322111   23458887


Q ss_pred             ecc
Q 025775          111 CFQ  113 (248)
Q Consensus       111 ~~~  113 (248)
                      +..
T Consensus        74 n~~   76 (389)
T COG1748          74 NAA   76 (389)
T ss_pred             EeC
Confidence            644

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=81.35  E-value=1.7  Score=38.83  Aligned_cols=62  Identities=18%  Similarity=0.194  Sum_probs=47.3

Q ss_pred             hcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCC-ceEEEEEcCC
Q 025775           28 YSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADP   90 (248)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~-~~~~~~~~d~   90 (248)
                      ..++|..|.|+.||-|-++...+..+. .|++-|.++++++..+....-+... ..++.+.+|+
T Consensus       246 ~fk~gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda  308 (495)
T KOG2078|consen  246 LFKPGEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDA  308 (495)
T ss_pred             ccCCcchhhhhhcCcCccccchhhcCc-EEEecCCCHHHHHHHHHhccccccchhheeeecccH
Confidence            556899999999999999888877774 9999999999999887755433221 1256666665

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=81.12  E-value=5.6  Score=33.90  Aligned_cols=85  Identities=12%  Similarity=0.010  Sum_probs=51.8

Q ss_pred             CCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           31 PYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        31 ~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      ++.+||=+|||. |..+..+++. +...+.++|.++..++.|...    .      .+  |..+.        ....+|+
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~~--------~~~g~Dv  203 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E------VL--DPEKD--------PRRDYRA  203 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c------cc--Chhhc--------cCCCCCE
Confidence            567888889875 5555556554 555677889888776655421    0      11  11100        1245888


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      |+-...-          ...+..+.+.|+++|.+++.
T Consensus       204 vid~~G~----------~~~~~~~~~~l~~~G~iv~~  230 (308)
T TIGR01202       204 IYDASGD----------PSLIDTLVRRLAKGGEIVLA  230 (308)
T ss_pred             EEECCCC----------HHHHHHHHHhhhcCcEEEEE
Confidence            8654321          12456667789999999865

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=80.60  E-value=16  Score=32.62  Aligned_cols=107  Identities=17%  Similarity=0.211  Sum_probs=56.5

Q ss_pred             cCCCCeEEEEc-CCC-CccHhHHHHc---CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC-Cchhhhhcc-
Q 025775           29 SHPYVTVCDLY-CGA-GVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-ENFETQMQE-  101 (248)
Q Consensus        29 ~~~~~~VLDlG-cG~-G~~~~~l~~~---~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~-  101 (248)
                      +.++.+||=+| +|. |..+..++..   +..+++++|.++.-++.+++.+........+.....|..+ .++...+.+ 
T Consensus       173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~  252 (410)
T cd08238         173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMEL  252 (410)
T ss_pred             CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHH
Confidence            34778888887 454 6555555554   2347999999999988887643211000001111122211 122221111 


Q ss_pred             -cCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          102 -KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       102 -~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                       ....+|+|+....      .    ...+....+.++++|.+++.
T Consensus       253 t~g~g~D~vid~~g------~----~~~~~~a~~~l~~~G~~v~~  287 (410)
T cd08238         253 TGGQGFDDVFVFVP------V----PELVEEADTLLAPDGCLNFF  287 (410)
T ss_pred             hCCCCCCEEEEcCC------C----HHHHHHHHHHhccCCeEEEE
Confidence             2346898865321      1    13455667788888865543

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=80.10  E-value=13  Score=35.45  Aligned_cols=119  Identities=11%  Similarity=0.151  Sum_probs=66.1

Q ss_pred             CCCeEEEEcCCCCccHhHHHH-------c-C-----CCeEEEEeCCh---HHHHHHHHHHH-----------h-----cC
Q 025775           31 PYVTVCDLYCGAGVDVDKWET-------A-L-----IANYIGIDVAT---SGIGEARDTWE-----------N-----QR   78 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~-------~-~-----~~~v~giDis~---~~l~~a~~~~~-----------~-----~~   78 (248)
                      +..+|||+|=|+|........       . +     .-++++++..|   +.+..+.+.+.           .     .+
T Consensus        57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g  136 (662)
T PRK01747         57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG  136 (662)
T ss_pred             CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence            457999999999985543321       1 1     12788999654   33333321110           0     01


Q ss_pred             C--------CceEEEEEcCCCCCchhhhhcccCCceeEEEecc-chhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775           79 K--------NFIAEFFEADPCAENFETQMQEKANQADLVCCFQ-HLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus        79 ~--------~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~-~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      .        ...+.+..+|+.+     .++.....+|+++.-. +...  .+.-....++..+.++++|||.+.- ...+
T Consensus       137 ~~~~~~~~~~~~l~l~~gd~~~-----~~~~~~~~~d~~~lD~FsP~~--np~~W~~~~~~~l~~~~~~~~~~~t-~t~a  208 (662)
T PRK01747        137 CHRLLFDDGRVTLDLWFGDANE-----LLPQLDARADAWFLDGFAPAK--NPDMWSPNLFNALARLARPGATLAT-FTSA  208 (662)
T ss_pred             ceEEEecCCcEEEEEEecCHHH-----HHHhccccccEEEeCCCCCcc--ChhhccHHHHHHHHHHhCCCCEEEE-eehH
Confidence            0        1134455666532     2221235699997643 2221  1222357899999999999998874 4444


Q ss_pred             hHHHHHHH
Q 025775          150 STIWAKYQ  157 (248)
Q Consensus       150 ~~~~~~~~  157 (248)
                      ..+++-+.
T Consensus       209 ~~vr~~l~  216 (662)
T PRK01747        209 GFVRRGLQ  216 (662)
T ss_pred             HHHHHHHH
Confidence            55555554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	248
3bgv_A	313	Crystal Structure Of Mrna Cap Guanine-N7 Methyltran		1e-17
1ri1_A	298	Structure And Mechanism Of Mrna Cap (Guanine N-7) M		2e-15
1wzn_A	252	Crystal Structure Of The Sam-Dependent Methyltransf		6e-04

>pdb|3BGV|A Chain A, Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase In Complex With Sah Length = 313

Iteration: 1
 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 103/221 (46%), Gaps = 25/221 (11%)
Query: 33  VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN------FIAEFF 86
           +TV DL CG G D+ KW+   I   +  D+A   + + +  +E+ +        F AEF 
Sbjct: 36  ITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFI 95
Query: 87  EADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146
            AD   E    + ++     D+  C       FE+ E+A  +L+N    L PGGYF+G T
Sbjct: 96  TADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTT 155
Query: 147 PDSSTIWAKYQKN-VEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLK 205
           P+S  +  + + +  E++ N                E Y + F+ ++  +PLFG KY   
Sbjct: 156 PNSFELIRRLEASETESFGN----------------EIYTVKFQ-KKGDYPLFGCKYDFN 198
Query: 206 FANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDD 246
               +    + LV+FP L  +A++  ++ V  +   EFY++
Sbjct: 199 LEGVVDV-PEFLVYFPLLNEMAKKYNMKLVYKKTFLEFYEE 238

>pdb|1RI1|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7) Methyltransferase Length = 298

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 98/229 (42%), Gaps = 25/229 (10%)
Query: 19  FAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR 78
           F K  LI++Y+    +V DL CG G D+ K+E A I  Y G+D+A   I +AR    N +
Sbjct: 52  FIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMK 111
Query: 79  KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKP 138
           + F   F   D    + +        + D++         F T E      +N++  L+P
Sbjct: 112 RRFKVFFRAQDSYGRHMDL-----GKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRP 166
Query: 139 GGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLF 198
           GGYF+   P    I  +Y++                    + ++ Y I  E + E  P+ 
Sbjct: 167 GGYFIMTVPSRDVILERYKQ------------------GRMSNDFYKIELE-KMEDVPME 207
Query: 199 G-KKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDD 246
             ++Y+    + ++   +  V F  ++   +  GL  VE +   +FY+D
Sbjct: 208 SVREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGFIDFYED 256

>pdb|1WZN|A Chain A, Crystal Structure Of The Sam-Dependent Methyltransferase From Pyrococcus Horikoshii Ot3 Length = 252

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 54/130 (41%), Gaps = 26/130 (20%)
Query: 35  VCDLYCGAGVDVDKWETALIAN----YIGIDVATSGIGEARDTWENQRKNFIAEFFEADP 90
           V DL CG G+      T  +A      +G+D+    +  AR   + + +N   EF + D 
Sbjct: 45  VLDLACGTGIP-----TLELAERGYEVVGLDLHEEMLRVARR--KAKERNLKIEFLQGDV 97
Query: 91  CAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP--- 147
               F+       N+ D V  F    M F+ EE  R+L   V+  LKPGG F+   P   
Sbjct: 98  LEIAFK-------NEFDAVTMFFSTIMYFD-EEDLRKLFSKVAEALKPGGVFITDFPCWF 149
Query: 148 ----DSSTIW 153
               D   +W
Sbjct: 150 YGGRDGPVVW 159

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	248
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	5e-51
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	1e-41
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	3e-40
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	7e-09
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	6e-08
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	6e-08
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	1e-07
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	2e-07
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	2e-07
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	3e-07
3ocj_A	305	Putative exported protein; structural genomics, PS	5e-07
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	1e-06
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	1e-06
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	2e-06
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	1e-05
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	1e-05
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
3lcc_A	235	Putative methyl chloride transferase; halide methy	3e-05
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	4e-05
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	5e-05
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	5e-05
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	7e-05
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	7e-05
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	8e-05
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	8e-05
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	9e-05
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	2e-04
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	2e-04
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	3e-04
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	4e-04
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	6e-04
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	6e-04
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	7e-04
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	8e-04

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298

 Score =  167 bits (424), Expect = 5e-51
 Identities = 58/242 (23%), Positives = 101/242 (41%), Gaps = 24/242 (9%)

Query: 8   RSELTHHR-LYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSG 66
           RS+  + R    F K  LI++Y+    +V DL CG G D+ K+E A I  Y G+D+A   
Sbjct: 40  RSKTINIRNANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVS 99

Query: 67  IGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERAR 126
           I +AR    N ++ F   F   D    +      +   + D++         F T E   
Sbjct: 100 INDARVRARNMKRRFKVFFRAQDSYGRHM-----DLGKEFDVISSQFSFHYAFSTSESLD 154

Query: 127 RLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVI 186
              +N++  L+PGGYF+   P    I  +Y++                    + ++ Y I
Sbjct: 155 IAQRNIARHLRPGGYFIMTVPSRDVILERYKQ------------------GRMSNDFYKI 196

Query: 187 TFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDD 246
             E  E+      ++Y+    + ++   +  V F  ++   +  GL  VE +   +FY+D
Sbjct: 197 ELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGFIDFYED 256

Query: 247 NR 248
             
Sbjct: 257 EG 258

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Length = 302

 Score =  143 bits (361), Expect = 1e-41
 Identities = 40/255 (15%), Positives = 86/255 (33%), Gaps = 32/255 (12%)

Query: 8   RSELTHHRLYEFAKTALIKIYSHPYV-------TVCDLYCGAGVDVDKWETALIANYIGI 60
           R+      L  + KT LI +Y             V  +  G G D++K+    IA  +  
Sbjct: 18  RTRGPLGILSNYVKTLLISMYCSKTFLDDSNKRKVLAIDFGNGADLEKYFYGEIALLVAT 77

Query: 61  DVATSGIGEARDTWENQRKNFIAEFFEA-----DPCAENFETQMQEK--ANQADLVCCFQ 113
           D     I    + +         ++++         ++ F + ++E     + +++    
Sbjct: 78  DPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQF 137

Query: 114 HLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPN 173
            +   F     A  ++ N+S L   GG  L  T D   +     K     H         
Sbjct: 138 AIHYSFHPRHYA-TVMNNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHK-------- 188

Query: 174 LVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLE 233
              N   SE+Y+   ++ +++       Y     +    E   ++    ++R+  E G  
Sbjct: 189 ---NLPSSENYMSVEKIADDRI----VVYNPSTMSTPMTE--YIIKKNDIVRVFNEYGFV 239

Query: 234 YVEIQNLNEFYDDNR 248
            V+  +     + ++
Sbjct: 240 LVDNVDFATIIERSK 254

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Length = 313

 Score =  140 bits (352), Expect = 3e-40
 Identities = 60/243 (24%), Positives = 104/243 (42%), Gaps = 30/243 (12%)

Query: 19  FAKTALIKIYSHPYV-------TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEAR 71
           + K+ LI  +            TV DL CG G D+ KW+   I   +  D+A   + + +
Sbjct: 15  WMKSVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQ 74

Query: 72  DTWENQRKNFI------AEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERA 125
             +E+ +          AEF  AD   E    + ++     D+  C       FE+ E+A
Sbjct: 75  QRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQA 134

Query: 126 RRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYV 185
             +L+N    L PGGYF+G TP+S  +  + + +                     +E Y 
Sbjct: 135 DMMLRNACERLSPGGYFIGTTPNSFELIRRLEASET---------------ESFGNEIYT 179

Query: 186 ITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYD 245
           + F+ ++  +PLFG KY       +    + LV+FP L  +A++  ++ V  +   EFY+
Sbjct: 180 VKFQ-KKGDYPLFGCKYDFNLEGVVDVP-EFLVYFPLLNEMAKKYNMKLVYKKTFLEFYE 237

Query: 246 DNR 248
           +  
Sbjct: 238 EKI 240

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 53.7 bits (129), Expect = 7e-09
 Identities = 44/231 (19%), Positives = 78/231 (33%), Gaps = 41/231 (17%)

Query: 18  EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIA----NYIGIDVATSGIGEARDT 73
           +F +    +        V DL CG G+      T  +A      +G+D+    +  AR  
Sbjct: 28  DFVEEIFKEDAKREVRRVLDLACGTGIP-----TLELAERGYEVVGLDLHEEMLRVARR- 81

Query: 74  WENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVS 133
            + + +N   EF + D        +     N+ D V  F    + +  EE  R+L   V+
Sbjct: 82  -KAKERNLKIEFLQGD--VLEIAFK-----NEFDAVTMFFST-IMYFDEEDLRKLFSKVA 132

Query: 134 SLLKPGGYFL-------GITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVI 186
             LKPGG F+           D   +W + +   +        ++P +          ++
Sbjct: 133 EALKPGGVFITDFPCWFYGGRDGPVVWNEQKGEEKLVIMDWREVEPAVQ---KLRFKRLV 189

Query: 187 TFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEI 237
                  +   F    +L              + P  +RL  E   E V+I
Sbjct: 190 QILRPNGEVKAFLVDDELNI------------YTPREVRLLAEKYFEKVKI 228

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243

 Score = 51.3 bits (123), Expect = 6e-08
 Identities = 38/234 (16%), Positives = 69/234 (29%), Gaps = 32/234 (13%)

Query: 10  ELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANY--IGIDVATSGI 67
           EL     Y      +++    P   + D+ CG G         L  +Y   G+D++   +
Sbjct: 13  ELMQDVPYPEWVAWVLEQV-EPGKRIADIGCGTGTAT----LLLADHYEVTGVDLSEEML 67

Query: 68  GEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARR 127
             A++  +    N   +F+  D      E          D +          +TE   ++
Sbjct: 68  EIAQE--KAMETNRHVDFWVQD--MRELELP-----EPVDAITILCDSLNYLQTEADVKQ 118

Query: 128 LLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSM----KPNLVPNCIRSES 183
              + + LL  GG  L        +   +     A H   SS      P   P  +  E 
Sbjct: 119 TFDSAARLLTDGGKLLFDVHSPYKMETLFNGKTYATHAEQSSYIWFADPGEEPLSVVHEL 178

Query: 184 YVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEI 237
                  E+ ++    + +  +                  I   REAG     +
Sbjct: 179 TFFIEG-EDGRYDRVDETHHQR-----------TYPPEQYITWLREAGFRVCAV 220

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246

 Score = 50.9 bits (122), Expect = 6e-08
 Identities = 30/227 (13%), Positives = 63/227 (27%), Gaps = 35/227 (15%)

Query: 24  LIKIYSHPYVTVCDLYCGAGVDVDKWETALIA----NYIGIDVATSGIGEARDTWENQRK 79
                +  +    DL CG G       T  +     N   +D++   + EA +  + + +
Sbjct: 30  KCVENNLVFDDYLDLACGTGNL-----TENLCPKFKNTWAVDLSQEMLSEAEN--KFRSQ 82

Query: 80  NFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG 139
                    D    N          + DL+ C           +  ++  + VS+ LK G
Sbjct: 83  GLKPRLACQD--ISNLNIN-----RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEG 135

Query: 140 GYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFG 199
           G F+        +      N   Y +                  Y+  F  + E +    
Sbjct: 136 GVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFY---- 191

Query: 200 KKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDD 246
           K++  +         +       + +  +   L  ++        D 
Sbjct: 192 KRFDEEH-------EERAYKEEDIEKYLKHGQLNILDK------VDC 225

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239

 Score = 49.8 bits (119), Expect = 1e-07
 Identities = 29/224 (12%), Positives = 67/224 (29%), Gaps = 40/224 (17%)

Query: 23  ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIA----NYIGIDVATSGIGEARDTWENQR 78
            L++  +    ++ D+ CG G                +  G++++   +  AR      +
Sbjct: 32  DLVRSRTPEASSLLDVACGTGTH-----LEHFTKEFGDTAGLELSEDMLTHAR------K 80

Query: 79  KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKP 138
           +   A   + D    +F         +   V          +T E     + + +  L+P
Sbjct: 81  RLPDATLHQGD--MRDFRLG-----RKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEP 133

Query: 139 GGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYV---ITFEVEEEKF 195
           GG  +         +A    + +       ++    V + +R  +     + F V +   
Sbjct: 134 GGVVVVEPWWFPETFADGWVSADVVRRDGRTVA--RVSHSVREGNATRMEVHFTVADP-- 189

Query: 196 PLFGKKYQLKFANDISAETQCLVHFPS--LIRLAREAGLEYVEI 237
              GK  +        ++   +  F           AGL    +
Sbjct: 190 ---GKGVR------HFSDVHLITLFHQAEYEAAFTAAGLRVEYL 224

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293

 Score = 50.0 bits (119), Expect = 2e-07
 Identities = 41/229 (17%), Positives = 77/229 (33%), Gaps = 26/229 (11%)

Query: 30  HPYVTVCDLYCGAGVDVDKWETALIANY----IGIDVATSGIGEARDTWENQRKNFIAEF 85
           H    V D+ CG GVD     + ++         +D +   +  A     N+RK    + 
Sbjct: 56  HGCHRVLDVACGTGVD-----SIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDK 110

Query: 86  FEADPCAENFETQMQEKANQADLVCC----FQHLQMCFETEERARRLLQNVSSLLKPGGY 141
           +  +        +     +  D V C    F HL      +   R  L+N++S+++PGG 
Sbjct: 111 WVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGL 170

Query: 142 FL--GITPDS--STIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPL 197
            +      D   ST  A   KN+    + +  +  +++    ++    + + V+      
Sbjct: 171 LVIDHRNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVPGAGR 230

Query: 198 FGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDD 246
            G     KF       +       S   L +EA     +         D
Sbjct: 231 DGAPGFSKF-----RLSYYPHCLASFTELVQEAFGGRCQH----SVLGD 270

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 32/228 (14%), Positives = 61/228 (26%), Gaps = 48/228 (21%)

Query: 23  ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIA---NYIGIDVATSGIGEARDTWENQRK 79
           AL++ +S    ++ D+ CG G+ +      L        G++++   +  AR      R+
Sbjct: 42  ALVRRHSPKAASLLDVACGTGMHL----RHLADSFGTVEGLELSADMLAIAR------RR 91

Query: 80  NFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG 139
           N  A     D    +F         +   V C          +      L+  ++ + P 
Sbjct: 92  NPDAVLHHGD--MRDFSLG-----RRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPD 144

Query: 140 GYFL--------GITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVE 191
           G  +          TP                    SS +              + + V 
Sbjct: 145 GVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEAT-------RIEVHYLVA 197

Query: 192 EEKFPLFGKKYQLKFANDISAETQCLVHFPS--LIRLAREAGLEYVEI 237
                   +            E+  +  F      R    AGL    +
Sbjct: 198 GP-----DRGIT------HHEESHRITLFTREQYERAFTAAGLSVEFM 234

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 49.0 bits (117), Expect = 3e-07
 Identities = 24/146 (16%), Positives = 48/146 (32%), Gaps = 25/146 (17%)

Query: 4   LPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIA------NY 57
               +        Y    +  I         + DL  G G       +A +        +
Sbjct: 19  EQRRKFIPCFDDFYG--VSVSIASVDTENPDILDLGAGTG-----LLSAFLMEKYPEATF 71

Query: 58  IGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQM 117
             +D++   +  A++ +    K    ++ EAD    +FE        + D+V     +  
Sbjct: 72  TLVDMSEKMLEIAKNRFRGNLK---VKYIEADYSKYDFE-------EKYDMVVSALSIH- 120

Query: 118 CFETEERARRLLQNVSSLLKPGGYFL 143
               +E  + L +   S+LK  G F+
Sbjct: 121 -HLEDEDKKELYKRSYSILKESGIFI 145

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 48.5 bits (115), Expect = 5e-07
 Identities = 37/244 (15%), Positives = 61/244 (25%), Gaps = 46/244 (18%)

Query: 5   PIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANY--IGIDV 62
            +P    T  R   F +     +   P   V  + CG   ++   + +       +GID 
Sbjct: 94  RLPAVLATRERHGHFRRALQRHL--RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDY 151

Query: 63  ATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETE 122
               +  A                  D  A   +T         DL+          + +
Sbjct: 152 DPEALDGATRLAAGHALAGQITLHRQD--AWKLDT-----REGYDLLTSNGLNIYEPD-D 203

Query: 123 ERARRLLQNVSSLLKPGGYFL--GITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIR 180
            R   L +     LKPGG  +   +TP                            P  + 
Sbjct: 204 ARVTELYRRFWQALKPGGALVTSFLTP----------------------------PPALS 235

Query: 181 SESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL 240
            +S      ++     L     QL F   I      L           EAG   +  ++ 
Sbjct: 236 PDSPWDMQAIDPHDLQL----QQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLRFEDD 291

Query: 241 NEFY 244
               
Sbjct: 292 RARL 295

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 29/246 (11%), Positives = 57/246 (23%), Gaps = 53/246 (21%)

Query: 10  ELTHHRLYEFAKTALIKIYSHPYVTVCDLYCG----------AGVDVDKWETALIANYIG 59
           +L                       V +L  G           G +V             
Sbjct: 61  DLIQDADGTSEAREFATRTGPVSGPVLELAAGMGRLTFPFLDLGWEV-----------TA 109

Query: 60  IDVATSGIGEARD--TWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC----FQ 113
           ++++TS +   R                 + D     F         +   V        
Sbjct: 110 LELSTSVLAAFRKRLAEAPADVRDRCTLVQGD--MSAFALD-----KRFGTVVISSGSIN 162

Query: 114 HLQMCFETEERARRLLQNVSSLLKPGGYFL--GITPDSSTIWAKYQKNVEAYHNRSSSMK 171
            L      E   R L  +V   L+PGG FL      +++      +K      +    + 
Sbjct: 163 EL-----DEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVL 217

Query: 172 PNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAG 231
                     +   I    E     +            +    + L+    ++R    +G
Sbjct: 218 HVRHLPAEEIQEITIHPADETTDPFV------------VCTHRRRLLAPDQVVRELVRSG 265

Query: 232 LEYVEI 237
            + +  
Sbjct: 266 FDVIAQ 271

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 47.0 bits (111), Expect = 1e-06
 Identities = 23/127 (18%), Positives = 43/127 (33%), Gaps = 20/127 (15%)

Query: 23  ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANY----IGIDVATSGIGEARDTWENQR 78
              ++  +P + + D  CG G       T  ++ +    IG+DV+ S +  A        
Sbjct: 48  PRFELLFNPELPLIDFACGNGTQ-----TKFLSQFFPRVIGLDVSKSALEIAAKENTAAN 102

Query: 79  KNFIAEFFEADPCAENFETQMQEKANQADLVCC--FQHLQMCFETEERARRLLQNVSSLL 136
                 +   D        Q+  +   A++     F H+       E+   L Q++  LL
Sbjct: 103 ----ISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHI-----PVEKRELLGQSLRILL 153

Query: 137 KPGGYFL 143
              G   
Sbjct: 154 GKQGAMY 160

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 17/114 (14%), Positives = 32/114 (28%), Gaps = 22/114 (19%)

Query: 34  TVCDLYCGAGVDVDKWETALIANY----IGIDVATSGIGEARDTWENQRKNFIAEFFEAD 89
            + D  CG G          ++      +G D+    I  A+  +        A +   D
Sbjct: 49  KILDAGCGQGRI-----GGYLSKQGHDVLGTDLDPILIDYAKQDFPE------ARWVVGD 97

Query: 90  PCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143
              +             DL+    ++      + R    L N+   L   G  +
Sbjct: 98  LSVDQIS------ETDFDLIVSAGNVMGFLAEDGR-EPALANIHRALGADGRAV 144

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 44.2 bits (104), Expect = 1e-05
 Identities = 23/149 (15%), Positives = 46/149 (30%), Gaps = 20/149 (13%)

Query: 7   PRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDK-WETALIANYIGIDVATS 65
            +  L   R        L          V DL CG G  +    +        G+DV+ S
Sbjct: 9   KKLNLNQQR-LGTVVAVLKS---VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYS 64

Query: 66  GIGEAR-----DTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFE 120
            +  A+     D     ++  I   F++            ++ +  D     + ++    
Sbjct: 65  VLERAKDRLKIDRLPEMQRKRI-SLFQSS------LVYRDKRFSGYDAATVIEVIEHL-- 115

Query: 121 TEERARRLLQNVSSLLKPGGYFLGITPDS 149
            E R +   + +    +P    +  TP+ 
Sbjct: 116 DENRLQAFEKVLFEFTRPQTVIV-STPNK 143

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292

 Score = 44.7 bits (105), Expect = 1e-05
 Identities = 17/116 (14%), Positives = 37/116 (31%), Gaps = 6/116 (5%)

Query: 51  TALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQADL 108
             +  N   ++ +   I + ++           +F      +  ++++M E  +  + D 
Sbjct: 79  PGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDF 138

Query: 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYH 164
           +   Q         +     L+   SLL      L I    S+ W K  K   +  
Sbjct: 139 IHMIQ----MLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRF 190

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 25/118 (21%), Positives = 39/118 (33%), Gaps = 22/118 (18%)

Query: 31  PYVTVCDLYCGAGVDVDKWETALIA----NYIGIDVATSGIGEARDTWENQRK-NFIAEF 85
                 ++ C AG       T  +A        IDV    IG A    +     ++ A  
Sbjct: 51  AVSNGLEIGCAAGAF-----TEKLAPHCKRLTVIDVMPRAIGRACQRTKRWSHISWAATD 105

Query: 86  FEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143
                 AE F           DL+   + L    E   + R  + N+  +L PGG+ +
Sbjct: 106 ILQFSTAELF-----------DLIVVAEVLY-YLEDMTQMRTAIDNMVKMLAPGGHLV 151

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 3e-05
 Identities = 40/274 (14%), Positives = 79/274 (28%), Gaps = 80/274 (29%)

Query: 4   LPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVA 63
             + R +  + +L    + AL+++     V +  +  G+G    K  T +       DV 
Sbjct: 129 YNVSRLQP-YLKL----RQALLELRPAKNVLIDGVL-GSG----K--TWVAL-----DV- 170

Query: 64  TSGIGEARDTWENQRKNF------IAEFFEADPCAENFETQMQEKANQADLVCCFQHLQM 117
                         + +F      +      +   E     +Q+   Q D     +    
Sbjct: 171 ------CLSYKVQCKMDFKIFWLNLKNCNSPETVLE----MLQKLLYQIDPNWTSRSDHS 220

Query: 118 C------FETEERARRLLQN---VSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHN--- 165
                     +   RRLL++    + LL        +  +   +     K   A++    
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLL--------VLLN---VQNA--KAWNAFNLSCK 267

Query: 166 -----RSSSMKPNLVPNC---IRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCL 217
                R   +   L       I  + + +T    +E   L  K    +   D+  E    
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLT-PDEVKSLLLKYLDCR-PQDLPREV-LT 324

Query: 218 VHFP---SLI------RLAREAGLEYVEIQNLNE 242
            + P   S+I       LA     ++V    L  
Sbjct: 325 TN-PRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235

 Score = 43.1 bits (101), Expect = 3e-05
 Identities = 25/129 (19%), Positives = 46/129 (35%), Gaps = 20/129 (15%)

Query: 23  ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEAR----DTWENQR 78
            L+   S P        CG G DV     +     +G+D++ S + +A      + + + 
Sbjct: 58  HLVDTSSLPLGRALVPGCGGGHDVV-AMASPERFVVGLDISESALAKANETYGSSPKAEY 116

Query: 79  KNFIAE-FFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLK 137
            +F+ E  F   P                DL+    ++  C    E      +++  LLK
Sbjct: 117 FSFVKEDVFTWRP------------TELFDLIFD--YVFFCAIEPEMRPAWAKSMYELLK 162

Query: 138 PGGYFLGIT 146
           P G  + + 
Sbjct: 163 PDGELITLM 171

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950

 Score = 43.3 bits (101), Expect = 4e-05
 Identities = 24/133 (18%), Positives = 48/133 (36%), Gaps = 9/133 (6%)

Query: 17  YEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKW--ETALIANYIGIDVATSGIGEARDTW 74
            E+A   + +       T+ D  CG+G  +D        +   IG+D++  G+  A    
Sbjct: 710 VEYALKHIRE---SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKML 766

Query: 75  ENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSS 134
             +          A     +   +   + +  D+  C + ++     E++A    + V S
Sbjct: 767 HVKLNKEACNVKSATLYDGSIL-EFDSRLHDVDIGTCLEVIEHM--EEDQACEFGEKVLS 823

Query: 135 LLKPGGYFLGITP 147
           L  P    +  TP
Sbjct: 824 LFHPKLLIVS-TP 835

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... Length = 289

 Score = 42.9 bits (100), Expect = 5e-05
 Identities = 14/69 (20%), Positives = 25/69 (36%)

Query: 75  ENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSS 134
           E Q +  +      D                AD +     L+         +R L ++++
Sbjct: 144 ERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITT 203

Query: 135 LLKPGGYFL 143
           LL+PGG+ L
Sbjct: 204 LLRPGGHLL 212

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 42.2 bits (99), Expect = 5e-05
 Identities = 36/184 (19%), Positives = 68/184 (36%), Gaps = 23/184 (12%)

Query: 24  LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANY----IGIDVATSGIGEARDTWENQRK 79
           L+  Y      V DL CG G       + L+ +Y    +G+D++   I +AR+  +++  
Sbjct: 31  LLMKYMKKRGKVLDLACGVGGF-----SFLLEDYGFEVVGVDISEDMIRKAREYAKSRES 85

Query: 80  NFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG 139
           N   EF   D  A         +    D V     +           ++ + V  +LKP 
Sbjct: 86  N--VEFIVGD--ARKLS----FEDKTFDYVIFIDSI--VHFEPLELNQVFKEVRRVLKPS 135

Query: 140 GYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFG 199
           G F+    D   +  + ++++        S     V       + VI F+ E++ F +  
Sbjct: 136 GKFIMYFTDLRELLPRLKESLVVGQKYWIS----KVIPDQEERTVVIEFKSEQDSFRVRF 191

Query: 200 KKYQ 203
             + 
Sbjct: 192 NVWG 195

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 41.8 bits (98), Expect = 7e-05
 Identities = 20/134 (14%), Positives = 43/134 (32%), Gaps = 9/134 (6%)

Query: 17  YEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKW-ETALIANYIGIDVATSGIGEARDTWE 75
                 AL +        V DL CG G  +    + +      G+DV+   +  A++  +
Sbjct: 18  MNGVVAALKQ---SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLD 74

Query: 76  NQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSL 135
             R       +E     +   T   ++ +  D     + ++       R     + +   
Sbjct: 75  --RLRLPRNQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHL--DLSRLGAFERVLFEF 130

Query: 136 LKPGGYFLGITPDS 149
            +P    +  TP+ 
Sbjct: 131 AQPKIVIVT-TPNI 143

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 41.4 bits (97), Expect = 7e-05
 Identities = 25/157 (15%), Positives = 41/157 (26%), Gaps = 13/157 (8%)

Query: 14  HRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANY-------IGIDVATSG 66
                 +    IK++     TV D  CG G D     TA +A+         G D+    
Sbjct: 6   KNSLGQSHD-YIKMFVKEGDTVVDATCGNGND-----TAFLASLVGENGRVFGFDIQDKA 59

Query: 67  IGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERAR 126
           I        +          +      +       KA   +L              E   
Sbjct: 60  IANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTI 119

Query: 127 RLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAY 163
           + L     LL  GG    +         + ++ V  +
Sbjct: 120 QALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEF 156

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 42.0 bits (99), Expect = 8e-05
 Identities = 30/129 (23%), Positives = 41/129 (31%), Gaps = 26/129 (20%)

Query: 30  HPYVTVCDLYCGAGVDVDKWETALIANY----IGIDVATSGIGEARDTWENQRKNFIAEF 85
            P   + DL CG G       T  IA      +G D A + I +AR  + +        F
Sbjct: 56  QPGEFILDLGCGTG-----QLTEKIAQSGAEVLGTDNAATMIEKARQNYPH------LHF 104

Query: 86  FEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145
             AD  A NF           D V     L       +     + ++   LK GG F+  
Sbjct: 105 DVAD--ARNFRV-----DKPLDAVFSNAMLHWV----KEPEAAIASIHQALKSGGRFVAE 153

Query: 146 TPDSSTIWA 154
                 I  
Sbjct: 154 FGGKGNIKY 162

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 41.4 bits (97), Expect = 8e-05
 Identities = 31/166 (18%), Positives = 52/166 (31%), Gaps = 30/166 (18%)

Query: 8   RSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIA----NYIGIDVA 63
             ++ +  ++   +  L  + +  +  V +   G G       T  +        GI+ +
Sbjct: 22  GEDIQYKEVFAHYEDILEDVVNKSFGNVLEFGVGTGN-----LTNKLLLAGRTVYGIEPS 76

Query: 64  TSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC---FQHLQMCFE 120
                 A+   E   K F     E D    +FE          D +     F HL     
Sbjct: 77  REMRMIAK---EKLPKEF--SITEGD--FLSFEV-----PTSIDTIVSTYAFHHL----- 119

Query: 121 TEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNR 166
           T++     +   S LL  GG  +      +     Y K VEA   R
Sbjct: 120 TDDEKNVAIAKYSQLLNKGGKIVFADTIFAD-QDAYDKTVEAAKQR 164

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 41.6 bits (97), Expect = 9e-05
 Identities = 20/135 (14%), Positives = 38/135 (28%), Gaps = 23/135 (17%)

Query: 14  HRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDT 73
               E      +     P   V +  CG G D  ++     A +   D +   +  AR  
Sbjct: 31  GPDPELTFDLWLSRLLTPQTRVLEAGCGHGPDAARF-GPQAARWAAYDFSPELLKLARAN 89

Query: 74  WENQRKNFIAEFFEADPCAEN-FETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNV 132
             +      A+ +E +   E               L+   +              ++  +
Sbjct: 90  APH------ADVYEWNGKGELPAGL-----GAPFGLIVSRRG----------PTSVILRL 128

Query: 133 SSLLKPGGYFLGITP 147
             L  P  +FL + P
Sbjct: 129 PELAAPDAHFLYVGP 143

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 22/134 (16%), Positives = 38/134 (28%), Gaps = 17/134 (12%)

Query: 14  HRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANY----IGIDVATSGIGE 69
            R    +    +         V D   G G D     TA +A         DV    +G+
Sbjct: 6   KRPIHMSHD-FLAEVLDDESIVVDATMGNGND-----TAFLAGLSKKVYAFDVQEQALGK 59

Query: 70  ARD-TWENQRKNFIAEFFEADPCAENFETQMQEKANQA--DLVCCFQHLQMCFETEERAR 126
                 +   +N   E        EN +  ++E    A  +L       +          
Sbjct: 60  TSQRLSDLGIENT--ELILD--GHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTL 115

Query: 127 RLLQNVSSLLKPGG 140
             ++ +   L+ GG
Sbjct: 116 EAIEKILDRLEVGG 129

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 20/114 (17%), Positives = 32/114 (28%), Gaps = 25/114 (21%)

Query: 34  TVCDLYCGAGVDVDKWETALIANY----IGIDVATSGIGEARDTWENQRKNFIAEFFEAD 89
            + +L CGAG          +          D +     EA        +      F   
Sbjct: 46  KILELGCGAGYQ-----AEAMLAAGFDVDATDGSPELAAEAS---RRLGRPVRTMLFHQL 97

Query: 90  PCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143
              + +           D V     L +    +E    +L+ +   LKPGG F 
Sbjct: 98  DAIDAY-----------DAVWAHACL-LHVPRDEL-ADVLKLIWRALKPGGLFY 138

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 26/154 (16%), Positives = 46/154 (29%), Gaps = 29/154 (18%)

Query: 13  HHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARD 72
            HR    ++   +K    P     ++  G G          +   IG++ +      AR 
Sbjct: 30  VHRFAYLSELQAVKCLL-PEGRGVEIGVGTGRF-----AVPLKIKIGVEPSERMAEIAR- 82

Query: 73  TWENQRKNFIAEFFEADPCAEN--FETQMQEKANQADLVCCFQHLQMCFETEERARRLLQ 130
                ++       +    AEN   +          D               +   R L+
Sbjct: 83  -----KRG--VFVLKGT--AENLPLK------DESFDFALMV----TTICFVDDPERALK 123

Query: 131 NVSSLLKPGGYFLGITPDSSTIWAK-YQKNVEAY 163
               +LK GGY +    D  +   + Y+KN E  
Sbjct: 124 EAYRILKKGGYLIVGIVDRESFLGREYEKNKEKS 157

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 20/113 (17%)

Query: 34  TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE 93
            + DL CG G           +  +G+D++   +  AR    +        +  AD    
Sbjct: 46  RIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTG----ITYERADLDKL 101

Query: 94  NFETQMQEKANQADLVCC---FQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143
           +         +  DL        ++       E   RL + V   L PGG+F+
Sbjct: 102 HLP------QDSFDLAYSSLALHYV-------EDVARLFRTVHQALSPGGHFV 141

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269

 Score = 39.1 bits (91), Expect = 6e-04
 Identities = 25/148 (16%), Positives = 40/148 (27%), Gaps = 24/148 (16%)

Query: 23  ALIKIYSHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNF 81
            L +        V D+ CG G     +  AL      G+DV+   I  A   +       
Sbjct: 77  QLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQ----- 131

Query: 82  IAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGY 141
              F  A      F           D +          E           ++ ++KPGG+
Sbjct: 132 -VTFCVASSHRLPFSDT------SMDAIIRIYAPCKAEE-----------LARVVKPGGW 173

Query: 142 FLGITPDSSTIWAKYQKNVEAYHNRSSS 169
            +  TP    +           H  +  
Sbjct: 174 VITATPGPRHLMELKGLIYNEVHLHAPH 201

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score = 38.9 bits (90), Expect = 6e-04
 Identities = 23/134 (17%), Positives = 39/134 (29%), Gaps = 17/134 (12%)

Query: 13  HHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARD 72
           H    E ++  +  +  H      D   G G       T L A    ++     + EA+ 
Sbjct: 75  HDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKR 134

Query: 73  TWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC---FQHLQMCFETEERARRLL 129
                    + +F  A    E          N  DL+       +L     T+    +  
Sbjct: 135 ELAGMP---VGKFILAS--METATLP----PNTYDLIVIQWTAIYL-----TDADFVKFF 180

Query: 130 QNVSSLLKPGGYFL 143
           ++    L P GY  
Sbjct: 181 KHCQQALTPNGYIF 194

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 39.1 bits (91), Expect = 7e-04
 Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 14/110 (12%)

Query: 34  TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE 93
           TV DL CG G              +GID++   + EA+    +    +  +  E      
Sbjct: 47  TVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEP 106

Query: 94  NFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143
           +            ++V       +          + + V   LK  G F+
Sbjct: 107 D----------AYNVVLSS----LALHYIASFDDICKKVYINLKSSGSFI 142

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 38.7 bits (90), Expect = 8e-04
 Identities = 21/128 (16%), Positives = 40/128 (31%), Gaps = 13/128 (10%)

Query: 16  LYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWE 75
           LY F K        +   TV D   G  +              GI+++   + +A +   
Sbjct: 11  LYRFLKYCNES---NLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAEN--F 65

Query: 76  NQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSL 135
           ++  NF     + D     F+            V  +  +      +   +  +  +  +
Sbjct: 66  SRENNFKLNISKGDIRKLPFK------DESMSFVYSYGTI--FHMRKNDVKEAIDEIKRV 117

Query: 136 LKPGGYFL 143
           LKPGG   
Sbjct: 118 LKPGGLAC 125

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	248
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	100.0
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.97
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.96
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.85
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.83
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.8
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.8
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.8
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.79
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.79
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.78
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.78
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.78
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.78
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.78
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.78
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.78
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.78
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.77
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.77
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.77
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.77
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.77
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.77
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.76
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.76
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.76
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.76
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.76
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.76
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.76
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.75
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.75
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.75
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.75
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.75
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.75
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.75
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.75
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.74
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.74
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.74
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.74
3ocj_A	305	Putative exported protein; structural genomics, PS	99.74
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.73
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.73
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.73
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.73
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.73
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.72
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.72
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.72
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.71
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.71
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.71
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.71
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.71
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.7
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.7
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.7
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.7
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.69
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.69
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.69
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.68
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.68
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.68
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.68
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.67
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.67
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.67
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.67
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.66
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.66
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.66
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.66
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.65
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.65
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.64
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.64
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.63
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.63
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.63
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.63
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.63
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.63
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.63
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.62
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.62
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.62
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.61
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.61
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.6
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.6
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.6
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.6
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.6
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.59
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.59
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.59
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.59
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.59
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.59
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.58
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.58
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.58
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.58
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.57
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.57
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.57
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.57
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.57
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.56
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.56
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.56
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.56
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.55
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.55
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.55
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.54
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.54
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.54
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.54
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.53
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.53
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.53
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.53
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.53
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.53
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.53
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.52
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.52
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.52
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.51
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.51
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.5
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.5
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.5
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.5
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.5
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.5
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.49
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.49
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.49
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.49
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.49
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.49
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.48
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.48
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.48
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.48
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.48
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.48
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.47
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.47
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.47
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.47
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.47
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.46
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.46
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.46
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.46
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.46
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.46
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.45
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.45
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.45
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.45
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.44
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.44
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.44
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.44
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.44
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.44
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.43
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.43
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.43
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.43
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.43
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.42
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.42
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.42
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.42
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.42
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.42
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.41
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.41
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.4
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.4
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.4
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.4
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.4
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.39
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.39
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.39
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.38
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.38
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.37
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.37
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.37
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.37
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.36
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.36
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.36
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.36
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.35
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.35
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.35
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.35
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.34
2o07_A	304	Spermidine synthase; structural genomics, structur	99.34
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.34
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.34
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.33
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.33
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.33
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.33
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.32
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.32
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.32
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.32
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.31
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.31
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.31
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.31
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.31
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.3
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.3
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.3
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.3
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.29
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.29
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.29
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.27
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.26
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.24
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.22
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.2
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.2
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.2
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.19
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.17
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.16
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.16
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.15
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.13
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.12
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.12
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.11
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.11
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.1
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.08
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.08
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.08
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.03
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.01
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.0
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.99
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.99
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.98
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.95
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.89
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.86
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.85
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.85
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.84
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.81
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.77
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.77
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.76
3khk_A	544	Type I restriction-modification system methylation	98.76
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.76
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.75
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.74
3lkd_A	542	Type I restriction-modification system methyltrans	98.71
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.68
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.67
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.63
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.62
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.59
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.59
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.58
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	98.58
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.57
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	98.47
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.43
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	98.38
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.26
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.23
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.22
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.22
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.19
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.16
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	98.14
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.06
3ufb_A	530	Type I restriction-modification system methyltran	97.95
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.87
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.59
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	97.54
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	97.54
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.48
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.43
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	97.32
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	96.74
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	96.44
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	96.38
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	96.27
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	96.21
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	96.16
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	96.06
2oo3_A	283	Protein involved in catabolism of external DNA; st	95.76
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	95.46
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	95.43
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	95.32
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	95.28
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	95.02
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	94.98
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	94.93
3iei_A	334	Leucine carboxyl methyltransferase 1; LCMT-1, S-ad	94.68
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	94.49
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	94.03
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	94.01
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	93.86
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	93.69
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	93.63
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	93.56
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	93.16
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	93.0
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	92.94
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	92.84
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	92.78
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	92.75
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	92.55
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	92.41
3gms_A	340	Putative NADPH:quinone reductase; structural genom	92.3
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	92.18
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	92.12
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	92.09
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	92.01
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	91.95
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	91.7
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	91.69
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	91.63
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	91.61
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	91.6
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	91.42
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	91.31
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	91.3
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	91.22
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	91.21
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	91.16
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	91.04
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	90.86
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	90.67
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	90.56
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	90.17
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	90.11
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	90.05
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	90.02
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	89.99
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	89.94
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	89.88
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	89.84
1id1_A	153	Putative potassium channel protein; RCK domain, E.	89.71
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	89.47
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	89.32
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	89.26
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	89.23
3c85_A	183	Putative glutathione-regulated potassium-efflux S	89.08
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	88.83
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	88.73
1ej6_A	1289	Lambda2; icosahedral, non-equivalence, dsRNA virus	88.57
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	88.54
4eye_A	342	Probable oxidoreductase; structural genomics, niai	88.52
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	88.06
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	87.84
2zig_A	297	TTHA0409, putative modification methylase; methylt	87.71
3me5_A	482	Cytosine-specific methyltransferase; structural ge	87.68
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	87.36
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	87.17
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	87.15
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	87.08
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	86.84
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	86.75
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	86.53
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	86.4
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	86.21
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	85.78
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	85.75
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	85.7
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	85.62
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	85.36
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	85.35
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	85.19
3iyl_W	1299	VP1; non-enveloped virus, membrane penetration pro	85.17
4g65_A	461	TRK system potassium uptake protein TRKA; structur	84.69
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	84.22
2hwk_A	320	Helicase NSP2; rossman fold, alpha/beta/alpha, mul	84.2
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	83.87
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	83.79
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	83.78
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	83.22
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	82.97
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	82.61
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	82.27
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	82.25
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	82.05
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	82.02
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	81.91
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	81.78
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	81.52
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	81.15
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	80.98
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	80.88
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	80.78
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	80.72
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	80.63
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	80.28
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	80.05

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=100.00  E-value=3.7e-32  Score=231.24  Aligned_cols=226  Identities=17%  Similarity=0.248  Sum_probs=164.3

Q ss_pred             CCCCCCcccchhhhhHhHHHHHHHHHhcC-------CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHH
Q 025775            2 SVLPIPRSELTHHRLYEFAKTALIKIYSH-------PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTW   74 (248)
Q Consensus         2 ~~~~~~r~~~~~~~~~~~~~~~li~~~~~-------~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~   74 (248)
                      ++|...|+++|++.++||+++.+|+.+++       ++.+|||||||+|.++..++..+..+|+|+|+|+.||+.|++++
T Consensus        12 ~~f~~~r~~~~~~~~nn~vks~li~~~~~~~~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~   91 (302)
T 2vdw_A           12 SYFTNKRTRGPLGILSNYVKTLLISMYCSKTFLDDSNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERY   91 (302)
T ss_dssp             CCBCSSCCCHHHHHHHHHHHHHHHHHHTCTTTSSCCSCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHH
T ss_pred             chhccccccchHHHHHHHHHHHHHHHHHhhhhhccCCCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHH
Confidence            68999999999999999999999998875       37899999999999888887776669999999999999999998


Q ss_pred             HhcCCC-----ceEEEEEcCCCCCchhhhhc--ccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775           75 ENQRKN-----FIAEFFEADPCAENFETQMQ--EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus        75 ~~~~~~-----~~~~~~~~d~~~~~~~~~~~--~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      ...+..     +++.|.+.|+....+...+.  .++++||+|+|.+++||++.+. +...+++++.++|||||+|+++++
T Consensus        92 ~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~~~FD~V~~~~~lhy~~~~~-~~~~~l~~~~r~LkpGG~~i~~~~  170 (302)
T 2vdw_A           92 NKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPR-HYATVMNNLSELTASGGKVLITTM  170 (302)
T ss_dssp             HHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCSSCEEEEEEESCGGGTCSTT-THHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HhccccccccccccchhhhhcccchhhhhhhccccCCCeeEEEECchHHHhCCHH-HHHHHHHHHHHHcCCCCEEEEEeC
Confidence            764321     13678888886544322221  1357999999999999977654 457999999999999999999999


Q ss_pred             ChhHHHHHHHHhHhhhhCCCCCCCCCCCCCcccCceeEEEecccCCCCCcceeeeE-EEEcc-CccCCCcceechHHHHH
Q 025775          148 DSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQ-LKFAN-DISAETQCLVHFPSLIR  225 (248)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~y~-~~l~~-~~~~~~e~lv~~~~l~~  225 (248)
                      +...+...+.+.  .+         ..+++....+.|. .+.       .++..+. .+... ...++++|+|+++.|++
T Consensus       171 ~~~~~~~~~~~~--~~---------~i~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~e~~v~~~el~~  231 (302)
T 2vdw_A          171 DGDKLSKLTDKK--TF---------IIHKNLPSSENYM-SVE-------KIADDRIVVYNPSTMSTPMTEYIIKKNDIVR  231 (302)
T ss_dssp             CHHHHTTCCSCE--EE---------ECCSSSCTTTSEE-EEC-------EEETTEEEEBCTTTBSSCEEEECCCHHHHHH
T ss_pred             CHHHHHHHHhcC--Cc---------cccccccccccee-eec-------cccccccceeeccccCCCceeeeeEHHHHHH
Confidence            987765322110  00         0112211111111 000       0011111 11112 24467889999999999


Q ss_pred             HHHHcCcEEEEecCchHHHhhc
Q 025775          226 LAREAGLEYVEIQNLNEFYDDN  247 (248)
Q Consensus       226 ~~~~~G~~~v~~~~f~~~~~~~  247 (248)
                      +++++||++++..+|.+||+.+
T Consensus       232 l~~~~Gl~lv~~~~f~~~~~~~  253 (302)
T 2vdw_A          232 VFNEYGFVLVDNVDFATIIERS  253 (302)
T ss_dssp             HHHHTTEEEEEEEEHHHHHHHH
T ss_pred             HHHHCCCEEEEecChHHHHHHH
Confidence            9999999999999999999875

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.97  E-value=4.4e-29  Score=213.19  Aligned_cols=223  Identities=28%  Similarity=0.517  Sum_probs=173.8

Q ss_pred             cccchh-hhhHhHHHHHHHHHhcC-------CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcC-
Q 025775            8 RSELTH-HRLYEFAKTALIKIYSH-------PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR-   78 (248)
Q Consensus         8 r~~~~~-~~~~~~~~~~li~~~~~-------~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~-   78 (248)
                      .+.+.. +.++||+++.++..++.       ++.+|||+|||+|.++..++..+..+++|+|+|+.|++.|+++....+ 
T Consensus         3 ~s~i~~lr~~~~~~k~~l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~   82 (313)
T 3bgv_A            3 QSRIFYLRNFNNWMKSVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKN   82 (313)
T ss_dssp             --CTHHHHHHHHHHHHHHHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHS
T ss_pred             cCcchhhhhccHHHHHHHHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhh
Confidence            344444 45889999988887754       778999999999999999987666699999999999999999876531 


Q ss_pred             -----CCceEEEEEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHH
Q 025775           79 -----KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIW  153 (248)
Q Consensus        79 -----~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~  153 (248)
                           ...++.++++|+...++...+...+++||+|+|.+++|+++.+.++...+++++.++|+|||.+++++++.+.+.
T Consensus        83 ~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~l~  162 (313)
T 3bgv_A           83 RRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELI  162 (313)
T ss_dssp             SSCC-CCCEEEEEECCTTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHH
T ss_pred             cccccccceEEEEEecccccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCChHHHH
Confidence                 123589999999876521112112458999999999999778888899999999999999999999999998777


Q ss_pred             HHHHHhHhhhhCCCCCCCCCCCCCcccCceeEEEecccCCCCCcceeeeEEEEccCccCCCcceechHHHHHHHHHcCcE
Q 025775          154 AKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLE  233 (248)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~G~~  233 (248)
                      +.+.+.       .    ...+|+    ..|.+.|... ...+.++..|.|.+...+ ++++|+++++.+.++++++||+
T Consensus       163 ~~~~~~-------~----~~~~~~----~~~~~~f~~~-~~~~~~~~~~~f~l~~~~-~~~~~~~~~~~~~~l~~~~G~~  225 (313)
T 3bgv_A          163 RRLEAS-------E----TESFGN----EIYTVKFQKK-GDYPLFGCKYDFNLEGVV-DVPEFLVYFPLLNEMAKKYNMK  225 (313)
T ss_dssp             HHHTTS-------S----SSEEEC----SSEEEEESCS-SCCCSSCCEEEEEEC----CCEEECCCHHHHHHHGGGGTEE
T ss_pred             HHHHhh-------c----cCccCC----eeEEEEeCCC-CCCCCccceEEEEECCcc-cCcceEEcHHHHHHHHHHcCcE
Confidence            655421       0    023454    3588878643 346788999999885443 6789999999999999999999


Q ss_pred             EEEecCchHHHhhc
Q 025775          234 YVEIQNLNEFYDDN  247 (248)
Q Consensus       234 ~v~~~~f~~~~~~~  247 (248)
                      ++...+|..+++.+
T Consensus       226 ~v~~~~f~~~g~~~  239 (313)
T 3bgv_A          226 LVYKKTFLEFYEEK  239 (313)
T ss_dssp             EEEEEEHHHHHHHH
T ss_pred             EEEecCHHHHHHHh
Confidence            99999999998765

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.96  E-value=1.8e-27  Score=201.06  Aligned_cols=209  Identities=27%  Similarity=0.494  Sum_probs=175.6

Q ss_pred             hhhHhHHHHHHHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCC
Q 025775           14 HRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE   93 (248)
Q Consensus        14 ~~~~~~~~~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~   93 (248)
                      ..+++|++..++..++.++.+|||+|||+|..+..++..+..+++|+|+|+.+++.|+++....+...++.++++|+.+.
T Consensus        47 ~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  126 (298)
T 1ri5_A           47 RNANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGR  126 (298)
T ss_dssp             HHHHHHHHHHHHHHHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTS
T ss_pred             HHHHHHHHHHHHHHhCCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCcccc
Confidence            45678999999888889999999999999999998887776699999999999999999987765445689999999776


Q ss_pred             chhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHHHhHhhhhCCCCCCCCC
Q 025775           94 NFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPN  173 (248)
Q Consensus        94 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (248)
                      ++.     .+++||+|+|..++|+.+.+.++...+++++.++|+|||.+++++++...+...+..              .
T Consensus       127 ~~~-----~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~--------------~  187 (298)
T 1ri5_A          127 HMD-----LGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQ--------------G  187 (298)
T ss_dssp             CCC-----CSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHH--------------T
T ss_pred             ccC-----CCCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHcc--------------C
Confidence            541     257899999999999877889999999999999999999999999999887776652              1


Q ss_pred             CCCCcccCceeEEEecccCCCCCc-ceeeeEEEEccCccCCCcceechHHHHHHHHHcCcEEEEecCchHHHhh
Q 025775          174 LVPNCIRSESYVITFEVEEEKFPL-FGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDD  246 (248)
Q Consensus       174 ~~g~~~~~~~~~~~~~~~~~~~~~-~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~G~~~v~~~~f~~~~~~  246 (248)
                      .+++.    .|++.++... ..|. +|..|.|.+.+.+....+++++++.+.++++++||+++....|..||..
T Consensus       188 ~~~~~----~~~~~~~~~~-~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~~~~~~~  256 (298)
T 1ri5_A          188 RMSND----FYKIELEKME-DVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGFIDFYED  256 (298)
T ss_dssp             CCBCS----SEEEECCCCS-SCCTTTCCEEEEEETTSCSSEEEECCCHHHHHHHHHTTTEEEEEEEEHHHHHHH
T ss_pred             ccCCe----eEEEEeCccc-cccccccceEEEEEchhhcCCcccccCHHHHHHHHHHcCCEEEEecCHHHHHHH
Confidence            34443    5777776532 3344 8889999888877667788999999999999999999999999999875

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.85  E-value=2.2e-20  Score=155.48  Aligned_cols=113  Identities=21%  Similarity=0.232  Sum_probs=97.6

Q ss_pred             HHHHHhcCCCCeEEEEcCCCCccHhHHHHc---CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhh
Q 025775           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM   99 (248)
Q Consensus        23 ~li~~~~~~~~~VLDlGcG~G~~~~~l~~~---~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   99 (248)
                      .++..+++|+.+|||||||+|..+..++..   +..+|+|+|+|+.||+.|+++....+...+++++++|+.+.++    
T Consensus        62 ~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~----  137 (261)
T 4gek_A           62 MLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI----  137 (261)
T ss_dssp             HHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC----
T ss_pred             HHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc----
Confidence            466777889999999999999999888765   2338999999999999999998876655679999999977543    


Q ss_pred             cccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          100 QEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       100 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                          +.||+|++.+++|+  .+.++...++++++++|||||.|++.
T Consensus       138 ----~~~d~v~~~~~l~~--~~~~~~~~~l~~i~~~LkpGG~lii~  177 (261)
T 4gek_A          138 ----ENASMVVLNFTLQF--LEPSERQALLDKIYQGLNPGGALVLS  177 (261)
T ss_dssp             ----CSEEEEEEESCGGG--SCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ----cccccceeeeeeee--cCchhHhHHHHHHHHHcCCCcEEEEE
Confidence                56999999999997  56777889999999999999999987

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.83  E-value=8.4e-20  Score=152.01  Aligned_cols=141  Identities=17%  Similarity=0.127  Sum_probs=102.7

Q ss_pred             CCCCcccchhhhhHhHHHHHHHHHh---cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCC-
Q 025775            4 LPIPRSELTHHRLYEFAKTALIKIY---SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK-   79 (248)
Q Consensus         4 ~~~~r~~~~~~~~~~~~~~~li~~~---~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~-   79 (248)
                      +..+|+..+...+.+|....+-+.+   ..++.+|||||||+|.++..++..+..+|+|+|+|+.|++.|+++...... 
T Consensus        25 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~  104 (263)
T 2a14_A           25 YSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGA  104 (263)
T ss_dssp             CCCCCSCCHHHHHHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTC
T ss_pred             cCCCcccchhhHHHHHHHHHHHHHhcCCCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCc
Confidence            3444444444346677766654443   236789999999999877766666666899999999999999886543210 


Q ss_pred             ---------------------------CceEE-EEEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHH
Q 025775           80 ---------------------------NFIAE-FFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQN  131 (248)
Q Consensus        80 ---------------------------~~~~~-~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~  131 (248)
                                                 ...+. ++++|+.+......  ...++||+|++.+++|++..+.++...++++
T Consensus       105 ~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~--~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~  182 (263)
T 2a14_A          105 YDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAP--AVLPLADCVLTLLAMECACCSLDAYRAALCN  182 (263)
T ss_dssp             CCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTT--CCCCCEEEEEEESCHHHHCSSHHHHHHHHHH
T ss_pred             ccchHHHHHHHhcCCCCcchhhHHHHHHhhhheEEeccccCCCCCCc--cccCCCCEeeehHHHHHhcCCHHHHHHHHHH
Confidence                                       01233 88999977422100  0246899999999999876777889999999


Q ss_pred             HhccccCCcEEEEEe
Q 025775          132 VSSLLKPGGYFLGIT  146 (248)
Q Consensus       132 ~~~~LkpgG~~i~~~  146 (248)
                      +.++|||||.|++..
T Consensus       183 i~r~LKPGG~li~~~  197 (263)
T 2a14_A          183 LASLLKPGGHLVTTV  197 (263)
T ss_dssp             HHTTEEEEEEEEEEE
T ss_pred             HHHHcCCCcEEEEEE
Confidence            999999999999974

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.80  E-value=1.4e-18  Score=145.99  Aligned_cols=119  Identities=18%  Similarity=0.173  Sum_probs=97.1

Q ss_pred             HHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccC
Q 025775           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA  103 (248)
Q Consensus        24 li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  103 (248)
                      ++..+..++.+|||||||+|..+..++..+. +++|+|+|+.+++.|+++....+...++.++++|+.+.+..     .+
T Consensus        61 ~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-----~~  134 (285)
T 4htf_A           61 VLAEMGPQKLRVLDAGGGEGQTAIKMAERGH-QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASH-----LE  134 (285)
T ss_dssp             HHHHTCSSCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGG-----CS
T ss_pred             HHHhcCCCCCEEEEeCCcchHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhh-----cC
Confidence            3444455678999999999999999988755 99999999999999999987655445689999998665411     46


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHH
Q 025775          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (248)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~  152 (248)
                      ++||+|+|..+++++    ++...+++++.++|+|||.+++..++....
T Consensus       135 ~~fD~v~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~  179 (285)
T 4htf_A          135 TPVDLILFHAVLEWV----ADPRSVLQTLWSVLRPGGVLSLMFYNAHGL  179 (285)
T ss_dssp             SCEEEEEEESCGGGC----SCHHHHHHHHHHTEEEEEEEEEEEEBHHHH
T ss_pred             CCceEEEECchhhcc----cCHHHHHHHHHHHcCCCeEEEEEEeCCchH
Confidence            899999999999883    235789999999999999999998887553

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.80  E-value=2.9e-19  Score=151.29  Aligned_cols=119  Identities=18%  Similarity=0.126  Sum_probs=96.4

Q ss_pred             HHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCC--ceEEEEEcCCCCCchhhhhcc
Q 025775           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN--FIAEFFEADPCAENFETQMQE  101 (248)
Q Consensus        24 li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~  101 (248)
                      ++..+..++.+|||||||+|..+..++..+. +|+|+|+|+.|++.|+++....+..  .++.++++|+.+.++      
T Consensus        75 ~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~------  147 (299)
T 3g2m_A           75 FATRTGPVSGPVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL------  147 (299)
T ss_dssp             HHHHHCCCCSCEEEETCTTTTTHHHHHTTTC-CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC------
T ss_pred             HHHhhCCCCCcEEEEeccCCHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc------
Confidence            4444445556999999999999999988765 8999999999999999988754311  248999999977543      


Q ss_pred             cCCceeEEEecc-chhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHH
Q 025775          102 KANQADLVCCFQ-HLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (248)
Q Consensus       102 ~~~~fD~V~~~~-~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~  152 (248)
                       +++||+|+|.. .+|+  .+.++...+++++.++|+|||.+++.+++....
T Consensus       148 -~~~fD~v~~~~~~~~~--~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~  196 (299)
T 3g2m_A          148 -DKRFGTVVISSGSINE--LDEADRRGLYASVREHLEPGGKFLLSLAMSEAA  196 (299)
T ss_dssp             -SCCEEEEEECHHHHTT--SCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHH
T ss_pred             -CCCcCEEEECCccccc--CCHHHHHHHHHHHHHHcCCCcEEEEEeecCccc
Confidence             57899998764 4554  567788999999999999999999999988765

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.80  E-value=7.9e-19  Score=142.66  Aligned_cols=117  Identities=21%  Similarity=0.266  Sum_probs=97.0

Q ss_pred             HHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCC----CceEEEEEcCCCCCchhhhhc
Q 025775           25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK----NFIAEFFEADPCAENFETQMQ  100 (248)
Q Consensus        25 i~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~  100 (248)
                      +...++++.+|||+|||+|..+..++..+. +++|+|+|+.+++.|+++....+.    ..++.+.++|+...++     
T Consensus        24 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----   97 (235)
T 3sm3_A           24 IHNYLQEDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSF-----   97 (235)
T ss_dssp             HHHHCCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCS-----
T ss_pred             HHHhCCCCCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCC-----
Confidence            344567899999999999999999988755 999999999999999998765442    2257999999977655     


Q ss_pred             ccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       101 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                       .+++||+|++..++++ +.+.+....+++++.++|+|||.+++..++.
T Consensus        98 -~~~~~D~v~~~~~l~~-~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  144 (235)
T 3sm3_A           98 -HDSSFDFAVMQAFLTS-VPDPKERSRIIKEVFRVLKPGAYLYLVEFGQ  144 (235)
T ss_dssp             -CTTCEEEEEEESCGGG-CCCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred             -CCCceeEEEEcchhhc-CCCHHHHHHHHHHHHHHcCCCeEEEEEECCc
Confidence             4688999999999997 3456667799999999999999999986644

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.79  E-value=6e-20  Score=152.41  Aligned_cols=119  Identities=14%  Similarity=0.183  Sum_probs=93.2

Q ss_pred             CCCCcccchhhhhHhHHHHHHHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceE
Q 025775            4 LPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIA   83 (248)
Q Consensus         4 ~~~~r~~~~~~~~~~~~~~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~   83 (248)
                      |++-|+.+|. .+.+|     +..+.+.+.+|||||||+|..+..++.... +|+|+|+|+.|++.|++.       .++
T Consensus        18 Y~~~Rp~yp~-~l~~~-----l~~~~~~~~~vLDvGcGtG~~~~~l~~~~~-~v~gvD~s~~ml~~a~~~-------~~v   83 (257)
T 4hg2_A           18 YRAFRPRYPR-ALFRW-----LGEVAPARGDALDCGCGSGQASLGLAEFFE-RVHAVDPGEAQIRQALRH-------PRV   83 (257)
T ss_dssp             --CCCCCCCH-HHHHH-----HHHHSSCSSEEEEESCTTTTTHHHHHTTCS-EEEEEESCHHHHHTCCCC-------TTE
T ss_pred             HHHHCCCcHH-HHHHH-----HHHhcCCCCCEEEEcCCCCHHHHHHHHhCC-EEEEEeCcHHhhhhhhhc-------CCc
Confidence            5566776663 33344     334456678999999999999999977664 999999999999887532       238


Q ss_pred             EEEEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775           84 EFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus        84 ~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      .+.++|+.+.++      ++++||+|+|..++|++ .    ...+++++.++|||||.|++...
T Consensus        84 ~~~~~~~e~~~~------~~~sfD~v~~~~~~h~~-~----~~~~~~e~~rvLkpgG~l~~~~~  136 (257)
T 4hg2_A           84 TYAVAPAEDTGL------PPASVDVAIAAQAMHWF-D----LDRFWAELRRVARPGAVFAAVTY  136 (257)
T ss_dssp             EEEECCTTCCCC------CSSCEEEEEECSCCTTC-C----HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eeehhhhhhhcc------cCCcccEEEEeeehhHh-h----HHHHHHHHHHHcCCCCEEEEEEC
Confidence            999999988776      57899999999999972 2    45789999999999999988743

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.79  E-value=7.1e-18  Score=137.94  Aligned_cols=114  Identities=19%  Similarity=0.262  Sum_probs=96.0

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      ..++.+|||+|||+|..+..++..+. +++|+|+|+.|++.|+++....+.  ++.++++|+.+.++       +++||+
T Consensus        35 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~-------~~~fD~  104 (246)
T 1y8c_A           35 NLVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNI-------NRKFDL  104 (246)
T ss_dssp             TCCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCC-------SCCEEE
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHCCC-cEEEEECCHHHHHHHHHHHhhcCC--CeEEEecccccCCc-------cCCceE
Confidence            34788999999999999999987765 899999999999999998866442  48899999866443       378999


Q ss_pred             EEecc-chhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHH
Q 025775          109 VCCFQ-HLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIW  153 (248)
Q Consensus       109 V~~~~-~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~  153 (248)
                      |++.. ++|+. .+.++...+++++.++|+|||.+++.+++...+.
T Consensus       105 v~~~~~~l~~~-~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~  149 (246)
T 1y8c_A          105 ITCCLDSTNYI-IDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLS  149 (246)
T ss_dssp             EEECTTGGGGC-CSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHH
T ss_pred             EEEcCcccccc-CCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHH
Confidence            99998 99873 4567889999999999999999999999876543

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.78  E-value=7.3e-19  Score=140.85  Aligned_cols=110  Identities=15%  Similarity=0.080  Sum_probs=88.9

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcC-----------CCceEEEEEcCCCCCchhh
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR-----------KNFIAEFFEADPCAENFET   97 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~-----------~~~~~~~~~~d~~~~~~~~   97 (248)
                      .+++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.|+++.....           ...++.++++|+.+.++. 
T Consensus        20 ~~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~-   97 (203)
T 1pjz_A           20 VVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR-   97 (203)
T ss_dssp             CCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH-
T ss_pred             cCCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc-
Confidence            46789999999999999999988776 99999999999999998754210           012489999999886652 


Q ss_pred             hhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775           98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus        98 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                          ..++||+|++..++|+  .+.+....+++++.++|||||.+++.+
T Consensus        98 ----~~~~fD~v~~~~~l~~--l~~~~~~~~l~~~~r~LkpgG~~~l~~  140 (203)
T 1pjz_A           98 ----DIGHCAAFYDRAAMIA--LPADMRERYVQHLEALMPQACSGLLIT  140 (203)
T ss_dssp             ----HHHSEEEEEEESCGGG--SCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred             ----cCCCEEEEEECcchhh--CCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence                1168999999888887  456778889999999999999855543

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.78  E-value=3e-18  Score=141.34  Aligned_cols=106  Identities=18%  Similarity=0.134  Sum_probs=91.4

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      ++.+|||+|||+|..+..++..+..+++|+|+|+.+++.|+++...    .++.++++|+.+.++      .+++||+|+
T Consensus        44 ~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~------~~~~fD~v~  113 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTS----PVVCYEQKAIEDIAI------EPDAYNVVL  113 (253)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCCC----TTEEEEECCGGGCCC------CTTCEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhcc----CCeEEEEcchhhCCC------CCCCeEEEE
Confidence            7889999999999999999888766999999999999999988652    238999999866554      468999999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChh
Q 025775          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~  150 (248)
                      |..++|+.    ++...+++++.++|+|||.+++++++..
T Consensus       114 ~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~~  149 (253)
T 3g5l_A          114 SSLALHYI----ASFDDICKKVYINLKSSGSFIFSVEHPV  149 (253)
T ss_dssp             EESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEECHH
T ss_pred             Echhhhhh----hhHHHHHHHHHHHcCCCcEEEEEeCCCc
Confidence            99999984    3477899999999999999999988754

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.78  E-value=3.4e-17  Score=136.38  Aligned_cols=117  Identities=21%  Similarity=0.231  Sum_probs=95.5

Q ss_pred             HHHHHHh-cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhc
Q 025775           22 TALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ  100 (248)
Q Consensus        22 ~~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  100 (248)
                      ..+++.. ..++.+|||||||+|..+..++.....+++|+|+|+.+++.|+++....+...++.+.++|+.+.++     
T Consensus        51 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----  125 (273)
T 3bus_A           51 DEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPF-----  125 (273)
T ss_dssp             HHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS-----
T ss_pred             HHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCC-----
Confidence            3444444 4578999999999999998887754459999999999999999988765544468999999977655     


Q ss_pred             ccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775          101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       101 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                       ++++||+|++..+++++    ++...+++++.++|+|||.+++..+.
T Consensus       126 -~~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~i~~~~  168 (273)
T 3bus_A          126 -EDASFDAVWALESLHHM----PDRGRALREMARVLRPGGTVAIADFV  168 (273)
T ss_dssp             -CTTCEEEEEEESCTTTS----SCHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred             -CCCCccEEEEechhhhC----CCHHHHHHHHHHHcCCCeEEEEEEee
Confidence             46799999999988873    23578999999999999999988543

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.78  E-value=7.2e-19  Score=140.29  Aligned_cols=144  Identities=14%  Similarity=0.043  Sum_probs=112.8

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      ++.+|||+|||+|..+..++..+. +++|+|+|+.|++.|+++..      ++.++++|+.+.++      .+++||+|+
T Consensus        41 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~~~~------~~~~fD~v~  107 (203)
T 3h2b_A           41 VDGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTHP------SVTFHHGTITDLSD------SPKRWAGLL  107 (203)
T ss_dssp             CCSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHCT------TSEEECCCGGGGGG------SCCCEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHhCC------CCeEEeCccccccc------CCCCeEEEE
Confidence            378999999999999999988765 89999999999999998743      27899999866544      468999999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHHHhHhhhhCCCCCCCCCCCCCcccCceeEEEecc
Q 025775          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEV  190 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  190 (248)
                      +..++|+  .+.++...+++++.++|+|||.+++..++....                               .  .+..
T Consensus       108 ~~~~l~~--~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~-------------------------------~--~~~~  152 (203)
T 3h2b_A          108 AWYSLIH--MGPGELPDALVALRMAVEDGGGLLMSFFSGPSL-------------------------------E--PMYH  152 (203)
T ss_dssp             EESSSTT--CCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSC-------------------------------E--EECC
T ss_pred             ehhhHhc--CCHHHHHHHHHHHHHHcCCCcEEEEEEccCCch-------------------------------h--hhhc
Confidence            9999988  344568899999999999999999986654210                               0  0100


Q ss_pred             cCCCCCcceeeeEEEEccCccCCCcceechHHHHHHHHHcCcEEEEecCchH
Q 025775          191 EEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNE  242 (248)
Q Consensus       191 ~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~G~~~v~~~~f~~  242 (248)
                                        .  ....+..+.+.+.++++++||+++....+..
T Consensus       153 ------------------~--~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~  184 (203)
T 3h2b_A          153 ------------------P--VATAYRWPLPELAQALETAGFQVTSSHWDPR  184 (203)
T ss_dssp             ------------------S--SSCEEECCHHHHHHHHHHTTEEEEEEEECTT
T ss_pred             ------------------h--hhhhccCCHHHHHHHHHHCCCcEEEEEecCC
Confidence                              0  0123456889999999999999998776543

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.78  E-value=9.8e-19  Score=143.18  Aligned_cols=109  Identities=11%  Similarity=0.124  Sum_probs=91.3

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      .++.+|||||||+|..+..++.... +++|+|+|+.+++.|+++...     ++.++++|+.+. .      .+++||+|
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~d~~~~-~------~~~~fD~v  107 (250)
T 2p7i_A           41 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD-----GITYIHSRFEDA-Q------LPRRYDNI  107 (250)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGC-C------CSSCEEEE
T ss_pred             cCCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhC-----CeEEEEccHHHc-C------cCCcccEE
Confidence            3678899999999999988877665 899999999999999988654     388999998654 2      36789999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHh-ccccCCcEEEEEecChhHHHHH
Q 025775          110 CCFQHLQMCFETEERARRLLQNVS-SLLKPGGYFLGITPDSSTIWAK  155 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~-~~LkpgG~~i~~~~~~~~~~~~  155 (248)
                      +|..++|++-    +...+++++. ++|||||.++++.|+.......
T Consensus       108 ~~~~~l~~~~----~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~  150 (250)
T 2p7i_A          108 VLTHVLEHID----DPVALLKRINDDWLAEGGRLFLVCPNANAVSRQ  150 (250)
T ss_dssp             EEESCGGGCS----SHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHH
T ss_pred             EEhhHHHhhc----CHHHHHHHHHHHhcCCCCEEEEEcCChHHHHHH
Confidence            9999999842    3578999999 9999999999999988655443

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.78  E-value=8.6e-18  Score=139.79  Aligned_cols=108  Identities=16%  Similarity=0.117  Sum_probs=93.4

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      .++.+|||||||+|..+..++..+..+++|+|+|+.+++.|+++....+...++.++++|+.+.++      .+++||+|
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~------~~~~fD~i  118 (267)
T 3kkz_A           45 TEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPF------RNEELDLI  118 (267)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC------CTTCEEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCC------CCCCEEEE
Confidence            578999999999999999998876669999999999999999998776654569999999977654      46799999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      +|..++++.     +...+++++.++|+|||.+++..+.
T Consensus       119 ~~~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~  152 (267)
T 3kkz_A          119 WSEGAIYNI-----GFERGLNEWRKYLKKGGYLAVSECS  152 (267)
T ss_dssp             EESSCGGGT-----CHHHHHHHHGGGEEEEEEEEEEEEE
T ss_pred             EEcCCceec-----CHHHHHHHHHHHcCCCCEEEEEEee
Confidence            999999884     3678999999999999999998653

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.78  E-value=1.3e-17  Score=140.47  Aligned_cols=121  Identities=21%  Similarity=0.243  Sum_probs=94.6

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCC---CceEEEEEcCCCCCchhhhhcccCCce
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK---NFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      .++.+|||||||+|..+..++..+. +|+|+|+|+.|++.|+++....+.   ..++.+.++|+...+  ..+ ..+++|
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~-~~~~~f  131 (293)
T 3thr_A           56 HGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD--KDV-PAGDGF  131 (293)
T ss_dssp             TTCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHH--HHS-CCTTCE
T ss_pred             cCCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCc--ccc-ccCCCe
Confidence            4678999999999999999988876 999999999999999887533211   123678888875533  000 146799


Q ss_pred             eEEEec-cchhhhcC---CHHHHHHHHHHHhccccCCcEEEEEecChhHHHH
Q 025775          107 DLVCCF-QHLQMCFE---TEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA  154 (248)
Q Consensus       107 D~V~~~-~~l~~~~~---~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~  154 (248)
                      |+|+|. .+++++..   +.+....+++++.++|+|||+++++.++.+.+..
T Consensus       132 D~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~  183 (293)
T 3thr_A          132 DAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILS  183 (293)
T ss_dssp             EEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHH
T ss_pred             EEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCCHHHHhh
Confidence            999998 78887432   2467889999999999999999999999877654

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.78  E-value=1.4e-17  Score=138.22  Aligned_cols=107  Identities=14%  Similarity=0.225  Sum_probs=90.1

Q ss_pred             HHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCC
Q 025775           25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN  104 (248)
Q Consensus        25 i~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  104 (248)
                      +....+++.+|||||||+|..+..++..+. +++|+|+|+.+++.|+++..      ++.++++|+.+.++       ++
T Consensus        44 l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~~~~-------~~  109 (263)
T 3pfg_A           44 VRRHSPKAASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRNP------DAVLHHGDMRDFSL-------GR  109 (263)
T ss_dssp             HHHHCTTCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHHHHHCT------TSEEEECCTTTCCC-------SC
T ss_pred             HHhhCCCCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC------CCEEEECChHHCCc-------cC
Confidence            334456779999999999999998877765 89999999999999998754      27899999977543       57


Q ss_pred             ceeEEEecc-chhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775          105 QADLVCCFQ-HLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       105 ~fD~V~~~~-~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      +||+|+|.. ++++ +.+.++...+++++.++|+|||.+++..
T Consensus       110 ~fD~v~~~~~~l~~-~~~~~~~~~~l~~~~~~L~pgG~l~i~~  151 (263)
T 3pfg_A          110 RFSAVTCMFSSIGH-LAGQAELDAALERFAAHVLPDGVVVVEP  151 (263)
T ss_dssp             CEEEEEECTTGGGG-SCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             CcCEEEEcCchhhh-cCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            899999998 8887 3445778899999999999999999973

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.77  E-value=2.5e-17  Score=136.44  Aligned_cols=106  Identities=17%  Similarity=0.234  Sum_probs=88.7

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      ..++.+|||+|||+|..+..++.... +++|+|+|+.|++.|+++....+. .++.+.++|+.+.++      ++++||+
T Consensus        35 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~l~~------~~~~fD~  106 (260)
T 1vl5_A           35 LKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGH-QQVEYVQGDAEQMPF------TDERFHI  106 (260)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCC-CCCS------CTTCEEE
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEecHHhCCC------CCCCEEE
Confidence            34788999999999999888877665 999999999999999998765442 248999999987665      4689999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      |+|..++|+.    .+...+++++.++|+|||.+++..
T Consensus       107 V~~~~~l~~~----~d~~~~l~~~~r~LkpgG~l~~~~  140 (260)
T 1vl5_A          107 VTCRIAAHHF----PNPASFVSEAYRVLKKGGQLLLVD  140 (260)
T ss_dssp             EEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEhhhhHhc----CCHHHHHHHHHHHcCCCCEEEEEE
Confidence            9999999984    235689999999999999999873

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.77  E-value=1.1e-17  Score=141.76  Aligned_cols=111  Identities=16%  Similarity=0.172  Sum_probs=93.7

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      ..++.+|||||||+|..+..++.. + .+|+|+|+|+.+++.|+++....+...++.+.++|+.+  +       +++||
T Consensus        70 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~-------~~~fD  139 (302)
T 3hem_A           70 LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE--F-------DEPVD  139 (302)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGG--C-------CCCCS
T ss_pred             CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHH--c-------CCCcc
Confidence            458889999999999999999887 6 59999999999999999998876655568999999843  2       57899


Q ss_pred             EEEeccchhhhcC-----CHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          108 LVCCFQHLQMCFE-----TEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       108 ~V~~~~~l~~~~~-----~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      +|++..++|++..     +.+....+++++.++|||||.+++..+..
T Consensus       140 ~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  186 (302)
T 3hem_A          140 RIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITI  186 (302)
T ss_dssp             EEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEEC
T ss_pred             EEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEec
Confidence            9999999998433     33667899999999999999999985543

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.77  E-value=1.1e-17  Score=140.51  Aligned_cols=109  Identities=17%  Similarity=0.200  Sum_probs=90.6

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      ..++.+|||||||+|..+..++.. +. +|+|+|+|+.+++.|+++....+...++.+.++|+.+  +       +++||
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~-------~~~fD  131 (287)
T 1kpg_A           62 LQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ--F-------DEPVD  131 (287)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG--C-------CCCCS
T ss_pred             CCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhh--C-------CCCee
Confidence            457889999999999999888744 54 9999999999999999998765544468999999732  2       37899


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      +|++..+++++  +.++...+++++.++|||||.+++..++.
T Consensus       132 ~v~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  171 (287)
T 1kpg_A          132 RIVSIGAFEHF--GHERYDAFFSLAHRLLPADGVMLLHTITG  171 (287)
T ss_dssp             EEEEESCGGGT--CTTTHHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred             EEEEeCchhhc--ChHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence            99999999883  33567889999999999999999986654

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.77  E-value=5e-18  Score=139.78  Aligned_cols=107  Identities=18%  Similarity=0.154  Sum_probs=91.0

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      .++.+|||||||+|..+..++.....+++|+|+|+.+++.|+++....   .++.++++|+...++      .+++||+|
T Consensus        92 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~------~~~~fD~v  162 (254)
T 1xtp_A           92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATL------PPNTYDLI  162 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCC------CSSCEEEE
T ss_pred             cCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHHHCCC------CCCCeEEE
Confidence            468899999999999998887765668999999999999999887543   348999999866554      46789999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      ++..++|+  .+.++...+++++.++|+|||.+++..+
T Consensus       163 ~~~~~l~~--~~~~~~~~~l~~~~~~LkpgG~l~i~~~  198 (254)
T 1xtp_A          163 VIQWTAIY--LTDADFVKFFKHCQQALTPNGYIFFKEN  198 (254)
T ss_dssp             EEESCGGG--SCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEcchhhh--CCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            99999998  4557789999999999999999999864

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.77  E-value=9.9e-18  Score=138.36  Aligned_cols=108  Identities=16%  Similarity=0.113  Sum_probs=93.2

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      +++.+|||+|||+|..+..++.....+++|+|+|+.+++.|+++....+...++.++++|+.+.++      .+++||+|
T Consensus        45 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~------~~~~fD~v  118 (257)
T 3f4k_A           45 TDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPF------QNEELDLI  118 (257)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSS------CTTCEEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCC------CCCCEEEE
Confidence            478899999999999999998876559999999999999999998876655569999999977655      46899999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      +|..++|+.     +...+++++.++|+|||.+++..++
T Consensus       119 ~~~~~l~~~-----~~~~~l~~~~~~L~pgG~l~~~~~~  152 (257)
T 3f4k_A          119 WSEGAIYNI-----GFERGMNEWSKYLKKGGFIAVSEAS  152 (257)
T ss_dssp             EEESCSCCC-----CHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred             EecChHhhc-----CHHHHHHHHHHHcCCCcEEEEEEee
Confidence            999999873     3678999999999999999998654

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.77  E-value=1.7e-17  Score=135.58  Aligned_cols=115  Identities=17%  Similarity=0.237  Sum_probs=95.5

Q ss_pred             HHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCc
Q 025775           26 KIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (248)
Q Consensus        26 ~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (248)
                      ...++++.+|||+|||+|..+..++..  .+++|+|+|+.+++.|+++....+  .++.+.++|+.+.++       +++
T Consensus        28 ~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~-------~~~   96 (243)
T 3d2l_A           28 LEQVEPGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETN--RHVDFWVQDMRELEL-------PEP   96 (243)
T ss_dssp             HHHSCTTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCGGGCCC-------SSC
T ss_pred             HHHcCCCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcC--CceEEEEcChhhcCC-------CCC
Confidence            345667899999999999998888776  599999999999999999876543  348899999865443       478


Q ss_pred             eeEEEecc-chhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHH
Q 025775          106 ADLVCCFQ-HLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (248)
Q Consensus       106 fD~V~~~~-~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~  152 (248)
                      ||+|++.. ++++ +.+.++...+++++.++|+|||.+++.+++...+
T Consensus        97 fD~v~~~~~~~~~-~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~  143 (243)
T 3d2l_A           97 VDAITILCDSLNY-LQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKM  143 (243)
T ss_dssp             EEEEEECTTGGGG-CCSHHHHHHHHHHHHHHEEEEEEEEEEEECHHHH
T ss_pred             cCEEEEeCCchhh-cCCHHHHHHHHHHHHHhcCCCeEEEEEcCCHHHH
Confidence            99999986 7877 3467788999999999999999999999887654

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.76  E-value=3.2e-18  Score=137.47  Aligned_cols=119  Identities=15%  Similarity=0.065  Sum_probs=96.3

Q ss_pred             HHHHHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhc
Q 025775           21 KTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ  100 (248)
Q Consensus        21 ~~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  100 (248)
                      ...+++....++.+|||+|||+|..+..++..+..+++|+|+|+.+++.|+++....+...++.++++|+.+.++     
T Consensus        33 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----  107 (219)
T 3dlc_A           33 AENIINRFGITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPI-----  107 (219)
T ss_dssp             HHHHHHHHCCCEEEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSS-----
T ss_pred             HHHHHHhcCCCCCEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCC-----
Confidence            344455544344499999999999999888774459999999999999999998776544569999999977655     


Q ss_pred             ccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       101 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                       .+++||+|++..++|+.    ++...+++++.++|+|||.+++..+..
T Consensus       108 -~~~~~D~v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~~~~~~~  151 (219)
T 3dlc_A          108 -EDNYADLIVSRGSVFFW----EDVATAFREIYRILKSGGKTYIGGGFG  151 (219)
T ss_dssp             -CTTCEEEEEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred             -CcccccEEEECchHhhc----cCHHHHHHHHHHhCCCCCEEEEEeccC
Confidence             46899999999999984    346789999999999999999985544

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.76  E-value=2.6e-18  Score=140.56  Aligned_cols=110  Identities=21%  Similarity=0.304  Sum_probs=91.9

Q ss_pred             HHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCC
Q 025775           25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN  104 (248)
Q Consensus        25 i~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  104 (248)
                      +...++++.+|||||||+|..+..++..+. +++|+|+|+.+++.|+++...    .++.++++|+.+.++      .++
T Consensus        47 l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~------~~~  115 (242)
T 3l8d_A           47 FEQYVKKEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERGEG----PDLSFIKGDLSSLPF------ENE  115 (242)
T ss_dssp             HHHHSCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHTTTCB----TTEEEEECBTTBCSS------CTT
T ss_pred             HHHHcCCCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhccc----CCceEEEcchhcCCC------CCC
Confidence            344567889999999999999999988765 899999999999999877533    248999999977654      468


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      +||+|++..++|+.    ++...+++++.++|+|||.+++..++.
T Consensus       116 ~fD~v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~i~~~~~  156 (242)
T 3l8d_A          116 QFEAIMAINSLEWT----EEPLRALNEIKRVLKSDGYACIAILGP  156 (242)
T ss_dssp             CEEEEEEESCTTSS----SCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             CccEEEEcChHhhc----cCHHHHHHHHHHHhCCCeEEEEEEcCC
Confidence            99999999999873    345688999999999999999987654

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.76  E-value=7.6e-18  Score=139.48  Aligned_cols=115  Identities=17%  Similarity=0.117  Sum_probs=91.6

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCC----------------------------c
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN----------------------------F   81 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~----------------------------~   81 (248)
                      .++.+|||+|||+|..+..++..+..+|+|+|+|+.|++.|+++....+..                            .
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  134 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR  134 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence            367899999999999988887766568999999999999998887543210                            1


Q ss_pred             eE-EEEEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775           82 IA-EFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus        82 ~~-~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      ++ .+.++|+.+......  ...++||+|+|..++|+...+.++...+++++.++|+|||.+++..
T Consensus       135 ~v~~~~~~d~~~~~~~~~--~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  198 (265)
T 2i62_A          135 AIKQVLKCDVTQSQPLGG--VSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVD  198 (265)
T ss_dssp             HEEEEEECCTTSSSTTTT--CCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             hheeEEEeeeccCCCCCc--cccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Confidence            26 899999977543100  0227899999999999766677889999999999999999999875

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.76  E-value=4e-18  Score=139.13  Aligned_cols=107  Identities=21%  Similarity=0.259  Sum_probs=88.8

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      ++.+|||+|||+|..+..++..+. +|+|+|+|+.+++.|+++....+...++.++++|+.+...       ..+||+|+
T Consensus        66 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-------~~~fD~v~  137 (235)
T 3lcc_A           66 PLGRALVPGCGGGHDVVAMASPER-FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRP-------TELFDLIF  137 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHCBTTE-EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCC-------SSCEEEEE
T ss_pred             CCCCEEEeCCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCC-------CCCeeEEE
Confidence            456999999999999988866444 8999999999999999988654333458999999977442       56899999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      +..++++  .+.++...+++++.++|+|||.+++...
T Consensus       138 ~~~~l~~--~~~~~~~~~l~~~~~~LkpgG~l~~~~~  172 (235)
T 3lcc_A          138 DYVFFCA--IEPEMRPAWAKSMYELLKPDGELITLMY  172 (235)
T ss_dssp             EESSTTT--SCGGGHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EChhhhc--CCHHHHHHHHHHHHHHCCCCcEEEEEEe
Confidence            9999987  3556788999999999999999998643

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.76  E-value=1.5e-18  Score=142.26  Aligned_cols=147  Identities=20%  Similarity=0.210  Sum_probs=111.5

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      +++.+|||||||+|..+..++..+. +++|+|+|+.+++.|+++         +.++++|+.+.  ..  +-.+++||+|
T Consensus        40 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~--~~--~~~~~~fD~i  105 (240)
T 3dli_A           40 KGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGK---------FNVVKSDAIEY--LK--SLPDKYLDGV  105 (240)
T ss_dssp             TTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTT---------SEEECSCHHHH--HH--TSCTTCBSEE
T ss_pred             cCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHHHhh---------cceeeccHHHH--hh--hcCCCCeeEE
Confidence            4788999999999999988887766 799999999999988765         56788876432  00  1146899999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHHHhHhhhhCCCCCCCCCCCCCcccCceeEEEec
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFE  189 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  189 (248)
                      +|..++++  .+.++...+++++.++|||||.+++.+++...+......                         |     
T Consensus       106 ~~~~~l~~--~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-------------------------~-----  153 (240)
T 3dli_A          106 MISHFVEH--LDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINF-------------------------Y-----  153 (240)
T ss_dssp             EEESCGGG--SCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHH-------------------------T-----
T ss_pred             EECCchhh--CCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHH-------------------------h-----
Confidence            99999998  345567899999999999999999998887554332210                         0     


Q ss_pred             ccCCCCCcceeeeEEEEccCccCCCcceechHHHHHHHHHcCcEEEEecCchH
Q 025775          190 VEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNE  242 (248)
Q Consensus       190 ~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~G~~~v~~~~f~~  242 (248)
                                      ..    ....+..+.+.+.++++++||+++....+..
T Consensus       154 ----------------~~----~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~  186 (240)
T 3dli_A          154 ----------------ID----PTHKKPVHPETLKFILEYLGFRDVKIEFFEE  186 (240)
T ss_dssp             ----------------TS----TTCCSCCCHHHHHHHHHHHTCEEEEEEEECC
T ss_pred             ----------------cC----ccccccCCHHHHHHHHHHCCCeEEEEEEecc
Confidence                            00    0012355779999999999999997766553

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.76  E-value=1.3e-17  Score=138.05  Aligned_cols=108  Identities=21%  Similarity=0.189  Sum_probs=92.2

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      .++.+|||+|||+|..+..++.....+|+|+|+|+.+++.|+++....   .++.++++|+.+.++      ++++||+|
T Consensus        54 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~------~~~~fD~v  124 (266)
T 3ujc_A           54 NENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN---NKIIFEANDILTKEF------PENNFDLI  124 (266)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTTTCCC------CTTCEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECccccCCC------CCCcEEEE
Confidence            478899999999999999888763349999999999999999876543   248999999987655      46899999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      ++..++|+  .+.++...+++++.++|+|||.+++..+.
T Consensus       125 ~~~~~l~~--~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  161 (266)
T 3ujc_A          125 YSRDAILA--LSLENKNKLFQKCYKWLKPTGTLLITDYC  161 (266)
T ss_dssp             EEESCGGG--SCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             eHHHHHHh--cChHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            99999998  45688999999999999999999998654

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.76  E-value=1.8e-17  Score=135.02  Aligned_cols=107  Identities=19%  Similarity=0.260  Sum_probs=91.2

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      .++.+|||+|||+|..+..++... ..+++|+|+|+.+++.|+++....+   ++.++++|+.+.++       .++||+
T Consensus        43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~-------~~~fD~  112 (234)
T 3dtn_A           43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSKYDF-------EEKYDM  112 (234)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTTTCCC-------CSCEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchhccCC-------CCCceE
Confidence            377899999999999999888773 4599999999999999998876543   58999999977654       378999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      |++..++|+  .+.+....+++++.++|+|||.+++..+.
T Consensus       113 v~~~~~l~~--~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  150 (234)
T 3dtn_A          113 VVSALSIHH--LEDEDKKELYKRSYSILKESGIFINADLV  150 (234)
T ss_dssp             EEEESCGGG--SCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEeCcccc--CCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            999999998  46666778999999999999999998543

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.75  E-value=1.4e-17  Score=134.34  Aligned_cols=106  Identities=16%  Similarity=0.107  Sum_probs=89.5

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      ..++.+|||+|||+|..+..++..+. +++|+|+|+.+++.|+++.. .    ++.++++|+.+.++      . ++||+
T Consensus        43 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~-~----~~~~~~~d~~~~~~------~-~~fD~  109 (220)
T 3hnr_A           43 NKSFGNVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLP-K----EFSITEGDFLSFEV------P-TSIDT  109 (220)
T ss_dssp             HTCCSEEEEECCTTSHHHHHHHHTTC-EEEEECSCHHHHHHHHHHSC-T----TCCEESCCSSSCCC------C-SCCSE
T ss_pred             ccCCCeEEEeCCCCCHHHHHHHhCCC-eEEEEeCCHHHHHHHHHhCC-C----ceEEEeCChhhcCC------C-CCeEE
Confidence            34788999999999999999888755 99999999999999998865 2    37899999977554      3 78999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      |+|..++|+  .+......+++++.++|+|||.+++..++.
T Consensus       110 v~~~~~l~~--~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  148 (220)
T 3hnr_A          110 IVSTYAFHH--LTDDEKNVAIAKYSQLLNKGGKIVFADTIF  148 (220)
T ss_dssp             EEEESCGGG--SCHHHHHHHHHHHHHHSCTTCEEEEEEECB
T ss_pred             EEECcchhc--CChHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence            999999998  455556679999999999999999996543

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.75  E-value=2.3e-17  Score=133.43  Aligned_cols=115  Identities=23%  Similarity=0.273  Sum_probs=95.9

Q ss_pred             HHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCc
Q 025775           26 KIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (248)
Q Consensus        26 ~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (248)
                      ...++++.+|||+|||+|..+..++.... +++|+|+|+.+++.|+++....+  .++.++++|+.+.++      .+++
T Consensus        33 ~~~~~~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~------~~~~  103 (227)
T 1ve3_A           33 MKYMKKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKLSF------EDKT  103 (227)
T ss_dssp             HHSCCSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSCCS------CTTC
T ss_pred             HHhcCCCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC--CCceEEECchhcCCC------CCCc
Confidence            34456788999999999999988877766 99999999999999999876543  358999999877554      3578


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhH
Q 025775          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST  151 (248)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~  151 (248)
                      ||+|++..++++  .+..+...+++++.++|+|||.+++..++...
T Consensus       104 ~D~v~~~~~~~~--~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~  147 (227)
T 1ve3_A          104 FDYVIFIDSIVH--FEPLELNQVFKEVRRVLKPSGKFIMYFTDLRE  147 (227)
T ss_dssp             EEEEEEESCGGG--CCHHHHHHHHHHHHHHEEEEEEEEEEEECHHH
T ss_pred             EEEEEEcCchHh--CCHHHHHHHHHHHHHHcCCCcEEEEEecChHH
Confidence            999999988655  45777889999999999999999999888644

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.75  E-value=2.7e-17  Score=132.49  Aligned_cols=114  Identities=17%  Similarity=0.183  Sum_probs=92.9

Q ss_pred             HHHHh-cCCCCeEEEEcCCCCccHhHHHHcC--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhc
Q 025775           24 LIKIY-SHPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ  100 (248)
Q Consensus        24 li~~~-~~~~~~VLDlGcG~G~~~~~l~~~~--~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  100 (248)
                      ++... ..++.+|||+|||+|..+..++...  ..+++|+|+|+.+++.|+++....+.. ++.+.++|+.+.++     
T Consensus        29 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~-----  102 (219)
T 3dh0_A           29 VLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKSEENKIPL-----  102 (219)
T ss_dssp             HHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECBTTBCSS-----
T ss_pred             HHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEecccccCCC-----
Confidence            33443 4578899999999999999888763  359999999999999999988665432 48999999977554     


Q ss_pred             ccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775          101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       101 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                       .+++||+|++..++|+.    ++...+++++.++|+|||.+++..+.
T Consensus       103 -~~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~i~~~~  145 (219)
T 3dh0_A          103 -PDNTVDFIFMAFTFHEL----SEPLKFLEELKRVAKPFAYLAIIDWK  145 (219)
T ss_dssp             -CSSCEEEEEEESCGGGC----SSHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             -CCCCeeEEEeehhhhhc----CCHHHHHHHHHHHhCCCeEEEEEEec
Confidence             46789999999999873    24678999999999999999987433

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.75  E-value=2.4e-17  Score=138.79  Aligned_cols=127  Identities=16%  Similarity=0.136  Sum_probs=89.4

Q ss_pred             hHHHHHHHHHhc---CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCC---------------
Q 025775           18 EFAKTALIKIYS---HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK---------------   79 (248)
Q Consensus        18 ~~~~~~li~~~~---~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~---------------   79 (248)
                      .|....+.+.+.   .++.+|||||||+|.....++.....+|+|+|+|+.|++.|+++......               
T Consensus        55 ~~~~~~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~  134 (289)
T 2g72_A           55 PWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIE  134 (289)
T ss_dssp             HHHHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhc
Confidence            343444444432   26789999999999944433333445999999999999999886532100               


Q ss_pred             --------------CceEEEEEcCCCC-CchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEE
Q 025775           80 --------------NFIAEFFEADPCA-ENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLG  144 (248)
Q Consensus        80 --------------~~~~~~~~~d~~~-~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~  144 (248)
                                    ...+.++++|+.+ .++... ..++++||+|+|.+++|++....++...+++++.++|||||.|++
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~  213 (289)
T 2g72_A          135 GKGECWQDKERQLRARVKRVLPIDVHQPQPLGAG-SPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLL  213 (289)
T ss_dssp             CSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSS-CSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             CcccchhhhHHHHHhhhceEEecccCCCCCcccc-ccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence                          0014677889876 332110 003467999999999998666677899999999999999999998


Q ss_pred             E
Q 025775          145 I  145 (248)
Q Consensus       145 ~  145 (248)
                      .
T Consensus       214 ~  214 (289)
T 2g72_A          214 I  214 (289)
T ss_dssp             E
T ss_pred             E
Confidence            7

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.75  E-value=3.4e-17  Score=139.41  Aligned_cols=109  Identities=16%  Similarity=0.109  Sum_probs=93.0

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      .++.+|||+|||+|..+..++.....+|+|+|+|+.+++.|+++....+...++.++++|+.+.++      .+++||+|
T Consensus       116 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~------~~~~fD~V  189 (312)
T 3vc1_A          116 GPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPF------DKGAVTAS  189 (312)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC------CTTCEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCC------CCCCEeEE
Confidence            478899999999999999888762348999999999999999998776654569999999987665      46899999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      ++..+++++  +   ...+++++.++|+|||.+++..++.
T Consensus       190 ~~~~~l~~~--~---~~~~l~~~~~~LkpgG~l~~~~~~~  224 (312)
T 3vc1_A          190 WNNESTMYV--D---LHDLFSEHSRFLKVGGRYVTITGCW  224 (312)
T ss_dssp             EEESCGGGS--C---HHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             EECCchhhC--C---HHHHHHHHHHHcCCCcEEEEEEccc
Confidence            999999983  2   8889999999999999999886543

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.75  E-value=4.2e-17  Score=139.01  Aligned_cols=109  Identities=15%  Similarity=0.196  Sum_probs=91.5

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      ..++.+|||||||+|..+..++.. +. +|+|+|+|+.+++.|+++....+...++.+.++|+.+  +       +++||
T Consensus        88 ~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~-------~~~fD  157 (318)
T 2fk8_A           88 LKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED--F-------AEPVD  157 (318)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG--C-------CCCCS
T ss_pred             CCCcCEEEEEcccchHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHH--C-------CCCcC
Confidence            357889999999999999888876 55 9999999999999999998766544458999999733  2       36899


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      +|++..++++  .+.++...+++++.++|+|||.+++..++.
T Consensus       158 ~v~~~~~l~~--~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  197 (318)
T 2fk8_A          158 RIVSIEAFEH--FGHENYDDFFKRCFNIMPADGRMTVQSSVS  197 (318)
T ss_dssp             EEEEESCGGG--TCGGGHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred             EEEEeChHHh--cCHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            9999999988  334668899999999999999999986654

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.75  E-value=6.9e-17  Score=136.27  Aligned_cols=109  Identities=12%  Similarity=0.009  Sum_probs=92.6

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      ..++.+|||+|||+|..+..++.. +. +++|+|+|+.+++.|+++....+...++.++++|+.+.++      .+++||
T Consensus        80 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~------~~~~fD  152 (297)
T 2o57_A           80 LQRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC------EDNSYD  152 (297)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS------CTTCEE
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCC------CCCCEe
Confidence            357889999999999999988876 54 9999999999999999988765544468999999987665      467899


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      +|++..+++++-    +...+++++.++|||||.++++.+.
T Consensus       153 ~v~~~~~l~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~  189 (297)
T 2o57_A          153 FIWSQDAFLHSP----DKLKVFQECARVLKPRGVMAITDPM  189 (297)
T ss_dssp             EEEEESCGGGCS----CHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EEEecchhhhcC----CHHHHHHHHHHHcCCCeEEEEEEec
Confidence            999999998842    2688999999999999999998654

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.75  E-value=7.5e-18  Score=138.10  Aligned_cols=109  Identities=12%  Similarity=0.094  Sum_probs=90.5

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      ++.+|||||||+|..+..++.....+++|+|+|+.+++.|+++....+ ..++.++++|+...++      .+++||+|+
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~d~~~~~~------~~~~fD~v~  151 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG-KRVRNYFCCGLQDFTP------EPDSYDVIW  151 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGG-GGEEEEEECCGGGCCC------CSSCEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcC-CceEEEEEcChhhcCC------CCCCEEEEE
Confidence            578999999999998888777655699999999999999999876542 2358899999866544      356899999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      +..++++  .+.+....+++++.++|+|||.+++..+.
T Consensus       152 ~~~~l~~--~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  187 (241)
T 2ex4_A          152 IQWVIGH--LTDQHLAEFLRRCKGSLRPNGIIVIKDNM  187 (241)
T ss_dssp             EESCGGG--SCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             Ecchhhh--CCHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence            9999998  45666789999999999999999997543

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.74  E-value=1.2e-16  Score=130.89  Aligned_cols=107  Identities=19%  Similarity=0.242  Sum_probs=89.4

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      ..++.+|||+|||+|..+..++.... +++|+|+|+.+++.|+++....+. .++.+.++|+...++      .+++||+
T Consensus        19 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~------~~~~fD~   90 (239)
T 1xxl_A           19 CRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGV-ENVRFQQGTAESLPF------PDDSFDI   90 (239)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTC-CSEEEEECBTTBCCS------CTTCEEE
T ss_pred             cCCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCC-CCeEEEecccccCCC------CCCcEEE
Confidence            56889999999999999988877665 999999999999999988765442 248899999876554      4679999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      |+|..++|+.-    +...++.++.++|+|||.+++..+
T Consensus        91 v~~~~~l~~~~----~~~~~l~~~~~~LkpgG~l~~~~~  125 (239)
T 1xxl_A           91 ITCRYAAHHFS----DVRKAVREVARVLKQDGRFLLVDH  125 (239)
T ss_dssp             EEEESCGGGCS----CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEECCchhhcc----CHHHHHHHHHHHcCCCcEEEEEEc
Confidence            99999998732    367899999999999999999744

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.74  E-value=5.5e-17  Score=132.57  Aligned_cols=106  Identities=23%  Similarity=0.248  Sum_probs=89.9

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      ++.+|||||||+|..+..++..+..+++|+|+|+.+++.|+++....    ++.+.++|+...++      .+++||+|+
T Consensus        43 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~d~~~~~~------~~~~fD~v~  112 (243)
T 3bkw_A           43 GGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDT----GITYERADLDKLHL------PQDSFDLAY  112 (243)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCSS----SEEEEECCGGGCCC------CTTCEEEEE
T ss_pred             CCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcccC----CceEEEcChhhccC------CCCCceEEE
Confidence            78899999999999999888876559999999999999998876543    38899999866544      467899999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChh
Q 025775          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~  150 (248)
                      +..++|+.    ++...+++++.++|+|||.+++..++..
T Consensus       113 ~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~~~~~~~~  148 (243)
T 3bkw_A          113 SSLALHYV----EDVARLFRTVHQALSPGGHFVFSTEHPI  148 (243)
T ss_dssp             EESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEECHH
T ss_pred             Eecccccc----chHHHHHHHHHHhcCcCcEEEEEeCCcc
Confidence            99999873    2467899999999999999999988753

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.74  E-value=3.1e-17  Score=132.35  Aligned_cols=110  Identities=18%  Similarity=0.212  Sum_probs=90.1

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCC-CeEEEEeCChHHHHHHHHHHHhcCCCc----eEEEEEcCCCCCchhhhhcccCC
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNF----IAEFFEADPCAENFETQMQEKAN  104 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~-~~v~giDis~~~l~~a~~~~~~~~~~~----~~~~~~~d~~~~~~~~~~~~~~~  104 (248)
                      .++.+|||+|||+|..+..++.... .+++|+|+|+.+++.|++++...+...    ++.++++|+...+.      ..+
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~------~~~  101 (219)
T 3jwg_A           28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDK------RFS  101 (219)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCG------GGT
T ss_pred             cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccccc------ccC
Confidence            4678999999999999998887643 699999999999999999876543222    48999999865554      357


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      +||+|+|..++++  .+.+....+++++.++|+|||+++ ++++
T Consensus       102 ~fD~V~~~~~l~~--~~~~~~~~~l~~~~~~LkpgG~~i-~~~~  142 (219)
T 3jwg_A          102 GYDAATVIEVIEH--LDENRLQAFEKVLFEFTRPQTVIV-STPN  142 (219)
T ss_dssp             TCSEEEEESCGGG--CCHHHHHHHHHHHHTTTCCSEEEE-EEEB
T ss_pred             CCCEEEEHHHHHh--CCHHHHHHHHHHHHHhhCCCEEEE-Eccc
Confidence            8999999999998  467778899999999999999554 4555

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.74  E-value=1.7e-17  Score=133.09  Aligned_cols=103  Identities=18%  Similarity=0.148  Sum_probs=88.0

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      ++++.+|||+|||+|..+..++..+. +++|+|+|+.+++.|+++.   +    +.+.++|+...+       .+++||+
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~---~----~~~~~~d~~~~~-------~~~~fD~  105 (211)
T 3e23_A           41 LPAGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRL---G----RPVRTMLFHQLD-------AIDAYDA  105 (211)
T ss_dssp             SCTTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---T----SCCEECCGGGCC-------CCSCEEE
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHHHHHHHhc---C----CceEEeeeccCC-------CCCcEEE
Confidence            45788999999999999999988755 9999999999999999886   2    567788875543       3689999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      |+|..++++  .+.++...+++++.++|+|||.+++.++.
T Consensus       106 v~~~~~l~~--~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  143 (211)
T 3e23_A          106 VWAHACLLH--VPRDELADVLKLIWRALKPGGLFYASYKS  143 (211)
T ss_dssp             EEECSCGGG--SCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEecCchhh--cCHHHHHHHHHHHHHhcCCCcEEEEEEcC
Confidence            999999998  45778899999999999999999998654

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.74  E-value=1.7e-17  Score=140.90  Aligned_cols=115  Identities=16%  Similarity=0.126  Sum_probs=95.3

Q ss_pred             HHhcCCCCeEEEEcCCCCccHhHHH--HcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccC
Q 025775           26 KIYSHPYVTVCDLYCGAGVDVDKWE--TALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA  103 (248)
Q Consensus        26 ~~~~~~~~~VLDlGcG~G~~~~~l~--~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  103 (248)
                      ...+.++.+|||||||+|..+..++  ..+..+++|+|+|+.+++.|+++....+...++.++++|+.+.++       +
T Consensus       113 ~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-------~  185 (305)
T 3ocj_A          113 QRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDT-------R  185 (305)
T ss_dssp             HHHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCC-------C
T ss_pred             HhhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCc-------c
Confidence            4556789999999999999888874  334559999999999999999998766554569999999876554       3


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      ++||+|++..++|+ +.+......+++++.++|+|||.+++....
T Consensus       186 ~~fD~v~~~~~~~~-~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  229 (305)
T 3ocj_A          186 EGYDLLTSNGLNIY-EPDDARVTELYRRFWQALKPGGALVTSFLT  229 (305)
T ss_dssp             SCEEEEECCSSGGG-CCCHHHHHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             CCeEEEEECChhhh-cCCHHHHHHHHHHHHHhcCCCeEEEEEecC
Confidence            88999999998887 345667778999999999999999998544

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.73  E-value=3e-17  Score=131.51  Aligned_cols=124  Identities=18%  Similarity=0.209  Sum_probs=101.4

Q ss_pred             HHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccC
Q 025775           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA  103 (248)
Q Consensus        24 li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  103 (248)
                      ++..++.++.+|||+|||+|..+..++..+..+++|+|+|+.+++.|+++....   .++.+.++|+.+.++      .+
T Consensus        35 ~l~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~---~~i~~~~~d~~~~~~------~~  105 (215)
T 2pxx_A           35 LLEPELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHV---PQLRWETMDVRKLDF------PS  105 (215)
T ss_dssp             HHGGGCCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTC---TTCEEEECCTTSCCS------CS
T ss_pred             HHHHhcCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccC---CCcEEEEcchhcCCC------CC
Confidence            345556788999999999999999998876668999999999999999887542   248899999977554      46


Q ss_pred             CceeEEEeccchhhhc-----------CCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHH
Q 025775          104 NQADLVCCFQHLQMCF-----------ETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (248)
Q Consensus       104 ~~fD~V~~~~~l~~~~-----------~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~  156 (248)
                      ++||+|++..+++++.           .+......+++++.++|+|||.+++..++.......+
T Consensus       106 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~  169 (215)
T 2pxx_A          106 ASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPHFRTRH  169 (215)
T ss_dssp             SCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCHHHHHHH
T ss_pred             CcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCcHHHHHH
Confidence            7899999988887644           2256788999999999999999999999886665544

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.73  E-value=7.4e-17  Score=130.02  Aligned_cols=111  Identities=14%  Similarity=0.153  Sum_probs=90.7

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCc----eEEEEEcCCCCCchhhhhcccCC
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNF----IAEFFEADPCAENFETQMQEKAN  104 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~~~----~~~~~~~d~~~~~~~~~~~~~~~  104 (248)
                      .++.+|||+|||+|..+..++... ..+++|+|+|+.+++.|++++...+...    ++.++++|+...+.      ..+
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~------~~~  101 (217)
T 3jwh_A           28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDK------RFH  101 (217)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCG------GGC
T ss_pred             cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccc------cCC
Confidence            467899999999999999988764 3599999999999999999876543322    58999999865444      357


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      +||+|+|..++++  .+.+....+++++.++|+|||++++ +++.
T Consensus       102 ~fD~v~~~~~l~~--~~~~~~~~~l~~~~~~LkpgG~li~-~~~~  143 (217)
T 3jwh_A          102 GYDAATVIEVIEH--LDLSRLGAFERVLFEFAQPKIVIVT-TPNI  143 (217)
T ss_dssp             SCSEEEEESCGGG--CCHHHHHHHHHHHHTTTCCSEEEEE-EEBH
T ss_pred             CcCEEeeHHHHHc--CCHHHHHHHHHHHHHHcCCCEEEEE-ccCc
Confidence            8999999999998  4677789999999999999996555 4553

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.73  E-value=1e-16  Score=128.82  Aligned_cols=106  Identities=20%  Similarity=0.124  Sum_probs=89.6

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      ..++.+|||+|||+|..+..++..+. +++|+|+|+.+++.|++  ..   ..++.++++|+.+. +      .+++||+
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~--~~---~~~~~~~~~d~~~~-~------~~~~~D~  110 (218)
T 3ou2_A           44 GNIRGDVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGR--HG---LDNVEFRQQDLFDW-T------PDRQWDA  110 (218)
T ss_dssp             TTSCSEEEEESCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHGG--GC---CTTEEEEECCTTSC-C------CSSCEEE
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHh--cC---CCCeEEEecccccC-C------CCCceeE
Confidence            34678999999999999998888755 99999999999999987  22   12489999999765 3      4789999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      |++..++|+  .+.+....+++++.++|+|||.+++..++.
T Consensus       111 v~~~~~l~~--~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  149 (218)
T 3ou2_A          111 VFFAHWLAH--VPDDRFEAFWESVRSAVAPGGVVEFVDVTD  149 (218)
T ss_dssp             EEEESCGGG--SCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             EEEechhhc--CCHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence            999999998  456667899999999999999999997665

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.73  E-value=1.5e-16  Score=129.67  Aligned_cols=109  Identities=15%  Similarity=0.222  Sum_probs=89.5

Q ss_pred             HHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCc
Q 025775           26 KIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (248)
Q Consensus        26 ~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (248)
                      ....+++.+|||+|||+|..+..++.... +++|+|+|+.|++.|+++..      ++.++++|+.+.++       +++
T Consensus        35 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~------~~~~~~~d~~~~~~-------~~~  100 (239)
T 3bxo_A           35 RSRTPEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRLP------DATLHQGDMRDFRL-------GRK  100 (239)
T ss_dssp             HHHCTTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHCT------TCEEEECCTTTCCC-------SSC
T ss_pred             HHhcCCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhCC------CCEEEECCHHHccc-------CCC
Confidence            34446789999999999999998887755 89999999999999988753      27899999876443       568


Q ss_pred             eeEEEecc-chhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          106 ADLVCCFQ-HLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       106 fD~V~~~~-~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      ||+|+|.. ++|+ +.+.++...+++++.++|+|||.+++..++.
T Consensus       101 ~D~v~~~~~~~~~-~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  144 (239)
T 3bxo_A          101 FSAVVSMFSSVGY-LKTTEELGAAVASFAEHLEPGGVVVVEPWWF  144 (239)
T ss_dssp             EEEEEECTTGGGG-CCSHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred             CcEEEEcCchHhh-cCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence            99999655 7776 3456788999999999999999999986544

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.73  E-value=1.5e-17  Score=137.60  Aligned_cols=108  Identities=13%  Similarity=0.083  Sum_probs=87.7

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHh----------c------CCCceEEEEEcCCCCC
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN----------Q------RKNFIAEFFEADPCAE   93 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~----------~------~~~~~~~~~~~d~~~~   93 (248)
                      .++.+|||+|||+|.++..++..+. +|+|+|+|+.||+.|+++...          .      ....++.++++|+.+.
T Consensus        67 ~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l  145 (252)
T 2gb4_A           67 QSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL  145 (252)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred             CCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence            4788999999999999999988877 999999999999999876531          0      0123589999999775


Q ss_pred             chhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775           94 NFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus        94 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +..     ..++||+|++..++++  .+.+....+++++.++|||||++++.
T Consensus       146 ~~~-----~~~~FD~V~~~~~l~~--l~~~~~~~~l~~~~~~LkpGG~l~l~  190 (252)
T 2gb4_A          146 PRA-----NIGKFDRIWDRGALVA--INPGDHDRYADIILSLLRKEFQYLVA  190 (252)
T ss_dssp             GGG-----CCCCEEEEEESSSTTT--SCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             Ccc-----cCCCEEEEEEhhhhhh--CCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            541     1378999999888887  34566788999999999999999754

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.72  E-value=1.5e-16  Score=133.72  Aligned_cols=107  Identities=23%  Similarity=0.342  Sum_probs=90.6

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHc-C-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~-~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      .++.+|||||||+|..+..++.. + ..+++|+|+|+.+++.|+++....+  .++.+.++|+.+.++       +++||
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~v~~~~~d~~~~~~-------~~~fD   91 (284)
T 3gu3_A           21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP--YDSEFLEGDATEIEL-------NDKYD   91 (284)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSS--SEEEEEESCTTTCCC-------SSCEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEEcchhhcCc-------CCCee
Confidence            47889999999999999888776 2 3599999999999999999887654  269999999977554       46899


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      +|++..++++.    .+...+++++.++|+|||.+++..++.
T Consensus        92 ~v~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~  129 (284)
T 3gu3_A           92 IAICHAFLLHM----TTPETMLQKMIHSVKKGGKIICFEPHW  129 (284)
T ss_dssp             EEEEESCGGGC----SSHHHHHHHHHHTEEEEEEEEEEECCH
T ss_pred             EEEECChhhcC----CCHHHHHHHHHHHcCCCCEEEEEecch
Confidence            99999998873    235689999999999999999998883

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.72  E-value=6.8e-17  Score=129.99  Aligned_cols=108  Identities=20%  Similarity=0.228  Sum_probs=92.5

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      ++.+|||+|||+|..+..++..+. +++|+|+|+.+++.|+++....+   ++.++++|+.+..       .+++||+|+
T Consensus        51 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~-------~~~~fD~v~  119 (216)
T 3ofk_A           51 AVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAIGRACQRTKRWS---HISWAATDILQFS-------TAELFDLIV  119 (216)
T ss_dssp             SEEEEEEECCTTSHHHHHHGGGEE-EEEEEESCHHHHHHHHHHTTTCS---SEEEEECCTTTCC-------CSCCEEEEE
T ss_pred             CCCcEEEEcCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcccCC---CeEEEEcchhhCC-------CCCCccEEE
Confidence            668999999999999998877764 99999999999999999876543   4899999997654       267899999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChh
Q 025775          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~  150 (248)
                      |..++|+ +.+.+....+++++.++|+|||.++++++...
T Consensus       120 ~~~~l~~-~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  158 (216)
T 3ofk_A          120 VAEVLYY-LEDMTQMRTAIDNMVKMLAPGGHLVFGSARDA  158 (216)
T ss_dssp             EESCGGG-SSSHHHHHHHHHHHHHTEEEEEEEEEEEECHH
T ss_pred             EccHHHh-CCCHHHHHHHHHHHHHHcCCCCEEEEEecCCC
Confidence            9999998 34467788999999999999999999877664

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.72  E-value=1e-16  Score=134.23  Aligned_cols=103  Identities=24%  Similarity=0.270  Sum_probs=86.8

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      ..++.+|||||||+|..+..++. ...+|+|+|+|+.|++.|+++..      ++.+.++|+...++       +++||+
T Consensus        55 ~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~~~~-------~~~fD~  120 (279)
T 3ccf_A           55 PQPGEFILDLGCGTGQLTEKIAQ-SGAEVLGTDNAATMIEKARQNYP------HLHFDVADARNFRV-------DKPLDA  120 (279)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHCT------TSCEEECCTTTCCC-------SSCEEE
T ss_pred             CCCCCEEEEecCCCCHHHHHHHh-CCCeEEEEECCHHHHHHHHhhCC------CCEEEECChhhCCc-------CCCcCE
Confidence            34788999999999999998887 44599999999999999988752      27789999876543       578999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      |++..++|++.    +...+++++.++|+|||.+++.+++.
T Consensus       121 v~~~~~l~~~~----d~~~~l~~~~~~LkpgG~l~~~~~~~  157 (279)
T 3ccf_A          121 VFSNAMLHWVK----EPEAAIASIHQALKSGGRFVAEFGGK  157 (279)
T ss_dssp             EEEESCGGGCS----CHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             EEEcchhhhCc----CHHHHHHHHHHhcCCCcEEEEEecCC
Confidence            99999999842    36689999999999999999997765

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.71  E-value=2.3e-16  Score=130.38  Aligned_cols=107  Identities=17%  Similarity=0.122  Sum_probs=88.5

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      ..++.+|||+|||+|..+..++..+ .+++|+|+|+.|++.|+++...  ...++.+.++|+.+.++      .+++||+
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~--~~~~~~~~~~d~~~~~~------~~~~fD~  107 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIARG-YRYIALDADAAMLEVFRQKIAG--VDRKVQVVQADARAIPL------PDESVHG  107 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTTT-CEEEEEESCHHHHHHHHHHTTT--SCTTEEEEESCTTSCCS------CTTCEEE
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHhhc--cCCceEEEEcccccCCC------CCCCeeE
Confidence            4578899999999999999888775 4999999999999999988622  12348999999977654      4678999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      |++..++|+.-    +...+++++.++|+|||.+++..++
T Consensus       108 v~~~~~l~~~~----~~~~~l~~~~~~L~pgG~l~~~~~~  143 (263)
T 2yqz_A          108 VIVVHLWHLVP----DWPKVLAEAIRVLKPGGALLEGWDQ  143 (263)
T ss_dssp             EEEESCGGGCT----THHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EEECCchhhcC----CHHHHHHHHHHHCCCCcEEEEEecC
Confidence            99999999832    4678999999999999999988443

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.71  E-value=1.1e-16  Score=127.49  Aligned_cols=108  Identities=14%  Similarity=0.106  Sum_probs=89.6

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      ++++ +|||+|||+|..+..++..+. +++|+|+|+.+++.|+++....+.  ++.+.++|+.+.++      .+++||+
T Consensus        28 ~~~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~------~~~~fD~   97 (202)
T 2kw5_A           28 IPQG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADFDI------VADAWEG   97 (202)
T ss_dssp             SCSS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTBSC------CTTTCSE
T ss_pred             CCCC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhcCC------CcCCccE
Confidence            4566 999999999999988877765 999999999999999998866542  48899999877654      4678999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChh
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~  150 (248)
                      |++.+ .|   .+.++...+++++.++|+|||.+++..++..
T Consensus        98 v~~~~-~~---~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  135 (202)
T 2kw5_A           98 IVSIF-CH---LPSSLRQQLYPKVYQGLKPGGVFILEGFAPE  135 (202)
T ss_dssp             EEEEC-CC---CCHHHHHHHHHHHHTTCCSSEEEEEEEECTT
T ss_pred             EEEEh-hc---CCHHHHHHHHHHHHHhcCCCcEEEEEEeccc
Confidence            99854 22   3677899999999999999999999877653

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.71  E-value=3.3e-16  Score=130.68  Aligned_cols=110  Identities=22%  Similarity=0.277  Sum_probs=91.2

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      ..++.+|||||||+|..+..++... ..+++|+|+|+.+++.|+++....+. .++.++++|+...++      .+++||
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~------~~~~fD  107 (276)
T 3mgg_A           35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGI-KNVKFLQANIFSLPF------EDSSFD  107 (276)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCGGGCCS------CTTCEE
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-CCcEEEEcccccCCC------CCCCee
Confidence            3588999999999999998888773 45999999999999999998876543 248999999876554      468999


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      +|++..+++++-    +...+++++.++|+|||.+++..++.
T Consensus       108 ~v~~~~~l~~~~----~~~~~l~~~~~~L~pgG~l~~~~~~~  145 (276)
T 3mgg_A          108 HIFVCFVLEHLQ----SPEEALKSLKKVLKPGGTITVIEGDH  145 (276)
T ss_dssp             EEEEESCGGGCS----CHHHHHHHHHHHEEEEEEEEEEEECG
T ss_pred             EEEEechhhhcC----CHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence            999999998732    24589999999999999999986543

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.71  E-value=5.9e-17  Score=133.57  Aligned_cols=109  Identities=20%  Similarity=0.213  Sum_probs=90.9

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      ..++.+|||+|||+|..+..++.....+++|+|+|+.|++.|+++....+...++.+.++|+.+.++       +++||+
T Consensus        34 ~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-------~~~fD~  106 (256)
T 1nkv_A           34 MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-------NEKCDV  106 (256)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-------SSCEEE
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-------CCCCCE
Confidence            4588999999999999998887764448999999999999999988765544458999999976543       578999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      |+|..++|+.-    +...+++++.++|||||.+++..+.
T Consensus       107 V~~~~~~~~~~----~~~~~l~~~~r~LkpgG~l~~~~~~  142 (256)
T 1nkv_A          107 AACVGATWIAG----GFAGAEELLAQSLKPGGIMLIGEPY  142 (256)
T ss_dssp             EEEESCGGGTS----SSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred             EEECCChHhcC----CHHHHHHHHHHHcCCCeEEEEecCc
Confidence            99999888732    3678999999999999999998653

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.71  E-value=1.8e-16  Score=130.49  Aligned_cols=121  Identities=26%  Similarity=0.369  Sum_probs=94.0

Q ss_pred             hHHHHHHHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh
Q 025775           18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET   97 (248)
Q Consensus        18 ~~~~~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   97 (248)
                      .|+...+-....+++.+|||+|||+|..+..++..+. +++|+|+|+.|++.|+++....+  .++.++++|+.+.++  
T Consensus        28 ~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~--  102 (252)
T 1wzn_A           28 DFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERN--LKIEFLQGDVLEIAF--  102 (252)
T ss_dssp             HHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCCEEEESCGGGCCC--
T ss_pred             HHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhcC--CceEEEECChhhccc--
Confidence            3444333222234678999999999999999888765 89999999999999999876554  248899999866443  


Q ss_pred             hhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775           98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus        98 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                           +++||+|+|.++.+.. .+.++...+++++.++|+|||.+++.+++.
T Consensus       103 -----~~~fD~v~~~~~~~~~-~~~~~~~~~l~~~~~~L~pgG~li~~~~~~  148 (252)
T 1wzn_A          103 -----KNEFDAVTMFFSTIMY-FDEEDLRKLFSKVAEALKPGGVFITDFPCW  148 (252)
T ss_dssp             -----CSCEEEEEECSSGGGG-SCHHHHHHHHHHHHHHEEEEEEEEEEEEC-
T ss_pred             -----CCCccEEEEcCCchhc-CCHHHHHHHHHHHHHHcCCCeEEEEeccch
Confidence                 4689999987543322 457788999999999999999999988874

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.70  E-value=1.2e-16  Score=129.23  Aligned_cols=111  Identities=20%  Similarity=0.264  Sum_probs=88.7

Q ss_pred             HHHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC--Cchhhhhc
Q 025775           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA--ENFETQMQ  100 (248)
Q Consensus        23 ~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~  100 (248)
                      .+++....++.+|||+|||+|..+..++..+ .+++|+|+|+.+++.++++.        ..+.++|+.+  .++     
T Consensus        24 ~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~~-----   89 (230)
T 3cc8_A           24 NLLKHIKKEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMPY-----   89 (230)
T ss_dssp             HHHTTCCTTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCCS-----
T ss_pred             HHHHHhccCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCCC-----
Confidence            3444333578899999999999999888775 69999999999999887653        2578899865  222     


Q ss_pred             ccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHH
Q 025775          101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (248)
Q Consensus       101 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~  152 (248)
                       .+++||+|++..++++.-    +...+++++.++|+|||.+++++|+....
T Consensus        90 -~~~~fD~v~~~~~l~~~~----~~~~~l~~~~~~L~~gG~l~~~~~~~~~~  136 (230)
T 3cc8_A           90 -EEEQFDCVIFGDVLEHLF----DPWAVIEKVKPYIKQNGVILASIPNVSHI  136 (230)
T ss_dssp             -CTTCEEEEEEESCGGGSS----CHHHHHHHTGGGEEEEEEEEEEEECTTSH
T ss_pred             -CCCccCEEEECChhhhcC----CHHHHHHHHHHHcCCCCEEEEEeCCcchH
Confidence             357899999999998732    24689999999999999999999887543

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.70  E-value=1.3e-16  Score=125.34  Aligned_cols=124  Identities=10%  Similarity=0.030  Sum_probs=90.5

Q ss_pred             HhHHHHHHHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh
Q 025775           17 YEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE   96 (248)
Q Consensus        17 ~~~~~~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   96 (248)
                      ..+++. ++...+.++.+|||+|||+|..+..++.. ..+|+|+|+|+.|++.|+++....+. .++.+++.|...... 
T Consensus         9 ~~~~~~-~l~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~~~l~~-   84 (185)
T 3mti_A            9 IHMSHD-FLAEVLDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGHENLDH-   84 (185)
T ss_dssp             HHHHHH-HHHTTCCTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCGGGGGG-
T ss_pred             HHHHHH-HHHHhCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcHHHHHh-
Confidence            344443 34556778999999999999999999877 55999999999999999998876553 458888866533211 


Q ss_pred             hhhcccCCceeEEEeccchhh-----hcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775           97 TQMQEKANQADLVCCFQHLQM-----CFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus        97 ~~~~~~~~~fD~V~~~~~l~~-----~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                       .   .+++||+|++......     .....+....+++++.++|||||.+++....
T Consensus        85 -~---~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  137 (185)
T 3mti_A           85 -Y---VREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY  137 (185)
T ss_dssp             -T---CCSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred             -h---ccCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence             1   3578999987632211     1114466778999999999999999988554

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.70  E-value=2.7e-16  Score=124.18  Aligned_cols=112  Identities=13%  Similarity=0.033  Sum_probs=90.6

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      .++.+|||+|||+|..+..++..+..+|+|+|+|+.|++.|+++....+. .++.++++|+.+...  ..  .+++||+|
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~--~~--~~~~fD~i  117 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL-SGATLRRGAVAAVVA--AG--TTSPVDLV  117 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEESCHHHHHH--HC--CSSCCSEE
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-CceEEEEccHHHHHh--hc--cCCCccEE
Confidence            57889999999999998877777777899999999999999998876553 358999999744211  11  25789999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhc--cccCCcEEEEEecCh
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSS--LLKPGGYFLGITPDS  149 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~--~LkpgG~~i~~~~~~  149 (248)
                      ++....++   ..+....+++.+.+  +|+|||.+++..+..
T Consensus       118 ~~~~p~~~---~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~  156 (189)
T 3p9n_A          118 LADPPYNV---DSADVDAILAALGTNGWTREGTVAVVERATT  156 (189)
T ss_dssp             EECCCTTS---CHHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred             EECCCCCc---chhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence            99876554   35678899999998  999999999986654

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.70  E-value=1.6e-16  Score=134.41  Aligned_cols=112  Identities=13%  Similarity=0.113  Sum_probs=90.0

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHH--cCCCeEEEEeCChHHHHHHHHHHHhc-CCCceEEEEEcCCCCCchhhhhcccCCc
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWET--ALIANYIGIDVATSGIGEARDTWENQ-RKNFIAEFFEADPCAENFETQMQEKANQ  105 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~--~~~~~v~giDis~~~l~~a~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (248)
                      ..++.+|||||||+|..+..++.  .+..+|+|+|+|+.+++.|+++.... +...++.++++|+.+.++........++
T Consensus        34 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  113 (299)
T 3g5t_A           34 DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQK  113 (299)
T ss_dssp             CSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSC
T ss_pred             cCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCC
Confidence            45789999999999999999986  35569999999999999999987664 2234599999999876652100001279


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      ||+|+|..++|+.     +...+++++.++|+|||.+++.
T Consensus       114 fD~V~~~~~l~~~-----~~~~~l~~~~~~LkpgG~l~i~  148 (299)
T 3g5t_A          114 IDMITAVECAHWF-----DFEKFQRSAYANLRKDGTIAIW  148 (299)
T ss_dssp             EEEEEEESCGGGS-----CHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eeEEeHhhHHHHh-----CHHHHHHHHHHhcCCCcEEEEE
Confidence            9999999999984     4788999999999999999883

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.69  E-value=1.7e-16  Score=126.88  Aligned_cols=111  Identities=16%  Similarity=0.146  Sum_probs=90.5

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      ..++.+|||+|||+|..+..++.....+++|+|+|+.|++.|+++....+  .++.+.++|+.+.++      ++++||+
T Consensus        21 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~------~~~~fD~   92 (209)
T 2p8j_A           21 SNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENN--FKLNISKGDIRKLPF------KDESMSF   92 (209)
T ss_dssp             SSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHT--CCCCEEECCTTSCCS------CTTCEEE
T ss_pred             cCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEECchhhCCC------CCCceeE
Confidence            45788999999999998544434333499999999999999998876543  247889999977654      4678999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      |++..++|+  .+.++...+++++.++|+|||.+++..++.
T Consensus        93 v~~~~~l~~--~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  131 (209)
T 2p8j_A           93 VYSYGTIFH--MRKNDVKEAIDEIKRVLKPGGLACINFLTT  131 (209)
T ss_dssp             EEECSCGGG--SCHHHHHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred             EEEcChHHh--CCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence            999998887  357789999999999999999999986653

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.69  E-value=5e-17  Score=132.88  Aligned_cols=113  Identities=16%  Similarity=0.007  Sum_probs=88.3

Q ss_pred             HHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCC--chhhhhcccC
Q 025775           26 KIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE--NFETQMQEKA  103 (248)
Q Consensus        26 ~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  103 (248)
                      .....++.+|||||||+|..+..++..+..+++|+|+|+.|++.|+++....+  .++.++++|+.+.  ++      .+
T Consensus        55 ~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~------~~  126 (236)
T 1zx0_A           55 AAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTL------PD  126 (236)
T ss_dssp             HHHTTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGS------CT
T ss_pred             hhcCCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC--CCeEEEecCHHHhhccc------CC
Confidence            33456788999999999999988876666689999999999999999876544  4689999998553  33      46


Q ss_pred             CceeEEEe-ccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775          104 NQADLVCC-FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       104 ~~fD~V~~-~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      ++||+|++ .+.++...........+++++.++|||||+|++..
T Consensus       127 ~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~  170 (236)
T 1zx0_A          127 GHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             TCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             CceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence            78999998 55432222345567788999999999999998763

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.69  E-value=3.7e-16  Score=131.73  Aligned_cols=114  Identities=14%  Similarity=0.137  Sum_probs=78.3

Q ss_pred             CCCeEEEEcCCCCccHhH----HHHc-CCCe--EEEEeCChHHHHHHHHHHHhcCC--CceEEEEEcCCCCCchhhhh--
Q 025775           31 PYVTVCDLYCGAGVDVDK----WETA-LIAN--YIGIDVATSGIGEARDTWENQRK--NFIAEFFEADPCAENFETQM--   99 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~----l~~~-~~~~--v~giDis~~~l~~a~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~--   99 (248)
                      ++.+|||||||+|..+..    ++.. +...  ++|+|+|+.|++.|+++......  ..++.+.++++.  ++...+  
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~  129 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSS--EYQSRMLE  129 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHH--HHHHHHHT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchh--hhhhhhcc
Confidence            567999999999975433    3222 2233  49999999999999998764311  112334444432  221100  


Q ss_pred             cccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChh
Q 025775          100 QEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (248)
Q Consensus       100 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~  150 (248)
                      ...+++||+|+|..++|++    ++...++++++++|||||.+++..++.+
T Consensus       130 ~~~~~~fD~V~~~~~l~~~----~d~~~~l~~~~r~LkpgG~l~i~~~~~~  176 (292)
T 2aot_A          130 KKELQKWDFIHMIQMLYYV----KDIPATLKFFHSLLGTNAKMLIIVVSGS  176 (292)
T ss_dssp             TTCCCCEEEEEEESCGGGC----SCHHHHHHHHHHTEEEEEEEEEEEECTT
T ss_pred             ccCCCceeEEEEeeeeeec----CCHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence            0136789999999999983    2467899999999999999999866543

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.68  E-value=1.6e-16  Score=128.20  Aligned_cols=106  Identities=24%  Similarity=0.236  Sum_probs=82.5

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      .++.+|||+|||+|..+..++..+. +++|+|+|+.+++.|+++   .    .+.+.++|+.+...  .......+||+|
T Consensus        51 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~---~----~~~~~~~~~~~~~~--~~~~~~~~fD~v  120 (227)
T 3e8s_A           51 RQPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAA---G----AGEVHLASYAQLAE--AKVPVGKDYDLI  120 (227)
T ss_dssp             TCCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHT---C----SSCEEECCHHHHHT--TCSCCCCCEEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHHHHh---c----ccccchhhHHhhcc--cccccCCCccEE
Confidence            4679999999999999988887755 899999999999999877   1    25677877644210  011134569999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChh
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~  150 (248)
                      +|..++| .    .+...+++++.++|+|||.+++..++..
T Consensus       121 ~~~~~l~-~----~~~~~~l~~~~~~L~pgG~l~~~~~~~~  156 (227)
T 3e8s_A          121 CANFALL-H----QDIIELLSAMRTLLVPGGALVIQTLHPW  156 (227)
T ss_dssp             EEESCCC-S----SCCHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             EECchhh-h----hhHHHHHHHHHHHhCCCeEEEEEecCcc
Confidence            9998887 2    2356899999999999999999988753

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.68  E-value=2.8e-15  Score=124.89  Aligned_cols=117  Identities=13%  Similarity=0.033  Sum_probs=87.7

Q ss_pred             HHHHHh-cCCCCeEEEEcCCCCccHhHHHHc-CC-CeEEEEeCChH------HHHHHHHHHHhcCCCceEEEEEcC-CCC
Q 025775           23 ALIKIY-SHPYVTVCDLYCGAGVDVDKWETA-LI-ANYIGIDVATS------GIGEARDTWENQRKNFIAEFFEAD-PCA   92 (248)
Q Consensus        23 ~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~-~~-~~v~giDis~~------~l~~a~~~~~~~~~~~~~~~~~~d-~~~   92 (248)
                      .++... ..++.+|||||||+|..+..++.. +. .+++|+|+|+.      +++.|++++...+...++.+.++| ...
T Consensus        34 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  113 (275)
T 3bkx_A           34 AIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSD  113 (275)
T ss_dssp             HHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTT
T ss_pred             HHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhh
Confidence            344444 568899999999999999988876 33 59999999998      999999988765443468999998 322


Q ss_pred             CchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775           93 ENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus        93 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      ..+    +-.+++||+|++..++|+. ...   ..+++.+.++++|||.+++...
T Consensus       114 ~~~----~~~~~~fD~v~~~~~l~~~-~~~---~~~~~~~~~l~~~gG~l~~~~~  160 (275)
T 3bkx_A          114 DLG----PIADQHFDRVVLAHSLWYF-ASA---NALALLFKNMAAVCDHVDVAEW  160 (275)
T ss_dssp             CCG----GGTTCCCSEEEEESCGGGS-SCH---HHHHHHHHHHTTTCSEEEEEEE
T ss_pred             ccC----CCCCCCEEEEEEccchhhC-CCH---HHHHHHHHHHhCCCCEEEEEEe
Confidence            221    1136789999999999873 333   3467777777888999999844

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.68  E-value=3.5e-16  Score=125.34  Aligned_cols=115  Identities=19%  Similarity=0.255  Sum_probs=93.2

Q ss_pred             HHHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhccc
Q 025775           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (248)
Q Consensus        23 ~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  102 (248)
                      .++..+..++.+|||+|||+|..+..+   +..+++|+|+|+.|++.|+++.  .    ++.++++|+.+.++      .
T Consensus        28 ~~l~~~~~~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~--~----~~~~~~~d~~~~~~------~   92 (211)
T 2gs9_A           28 RALKGLLPPGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA--P----EATWVRAWGEALPF------P   92 (211)
T ss_dssp             HHHHTTCCCCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC--T----TSEEECCCTTSCCS------C
T ss_pred             HHHHHhcCCCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC--C----CcEEEEcccccCCC------C
Confidence            445566668899999999999877666   4448999999999999998876  1    27889999877654      4


Q ss_pred             CCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHH
Q 025775          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (248)
Q Consensus       103 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~  156 (248)
                      +++||+|++..++|+.-    +...+++++.++|+|||.++++.++....+...
T Consensus        93 ~~~fD~v~~~~~l~~~~----~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~  142 (211)
T 2gs9_A           93 GESFDVVLLFTTLEFVE----DVERVLLEARRVLRPGGALVVGVLEALSPWAAL  142 (211)
T ss_dssp             SSCEEEEEEESCTTTCS----CHHHHHHHHHHHEEEEEEEEEEEECTTSHHHHH
T ss_pred             CCcEEEEEEcChhhhcC----CHHHHHHHHHHHcCCCCEEEEEecCCcCcHHHH
Confidence            67899999999988732    467899999999999999999988876555443

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.68  E-value=6.7e-16  Score=121.52  Aligned_cols=112  Identities=17%  Similarity=0.177  Sum_probs=94.1

Q ss_pred             HHHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhccc
Q 025775           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (248)
Q Consensus        23 ~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  102 (248)
                      .++..+++++.+|||+|||+|..+..++..+. +++|+|+|+.+++.++++...      +.++++|+.+.++      +
T Consensus        38 ~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~~~~~~~~a~~~~~~------~~~~~~d~~~~~~------~  104 (195)
T 3cgg_A           38 RLIDAMAPRGAKILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQDFPE------ARWVVGDLSVDQI------S  104 (195)
T ss_dssp             HHHHHHSCTTCEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCTT------SEEEECCTTTSCC------C
T ss_pred             HHHHHhccCCCeEEEECCCCCHHHHHHHHCCC-cEEEEcCCHHHHHHHHHhCCC------CcEEEcccccCCC------C
Confidence            46677788899999999999999998887754 999999999999999887532      7789999877554      3


Q ss_pred             CCceeEEEec-cchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          103 ANQADLVCCF-QHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       103 ~~~fD~V~~~-~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      +++||+|++. ..+|+  .+.+....+++++.++|+|||.+++..++.
T Consensus       105 ~~~~D~i~~~~~~~~~--~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~  150 (195)
T 3cgg_A          105 ETDFDLIVSAGNVMGF--LAEDGREPALANIHRALGADGRAVIGFGAG  150 (195)
T ss_dssp             CCCEEEEEECCCCGGG--SCHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred             CCceeEEEECCcHHhh--cChHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence            6789999998 56766  456778999999999999999999987654

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.67  E-value=4.8e-16  Score=123.27  Aligned_cols=121  Identities=16%  Similarity=0.117  Sum_probs=94.0

Q ss_pred             HHHHHhcCCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhc
Q 025775           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ  100 (248)
Q Consensus        23 ~li~~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  100 (248)
                      .++.....++.+|||+|||+|..+..++..  +.++++|+|+|+.+++.|+++....+...++.++++|+.+...  .  
T Consensus        14 ~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~--   89 (197)
T 3eey_A           14 DYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDK--Y--   89 (197)
T ss_dssp             HHHHHHCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGG--T--
T ss_pred             HHHHhcCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhh--h--
Confidence            344556778999999999999999888776  4459999999999999999998775543468999999855321  1  


Q ss_pred             ccCCceeEEEeccch-----hhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775          101 EKANQADLVCCFQHL-----QMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       101 ~~~~~fD~V~~~~~l-----~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                       .+++||+|++...+     +......+....+++++.++|+|||.+++....
T Consensus        90 -~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~  141 (197)
T 3eey_A           90 -IDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY  141 (197)
T ss_dssp             -CCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             -ccCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence             35789999987644     222344556778999999999999999988543

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.67  E-value=8.3e-16  Score=124.12  Aligned_cols=146  Identities=16%  Similarity=0.200  Sum_probs=107.6

Q ss_pred             HHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCC
Q 025775           25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN  104 (248)
Q Consensus        25 i~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  104 (248)
                      +....+ +.+|||+|||+|..+..++..     +|+|+|+.+++.++++    +    +.+.++|+...++      .++
T Consensus        42 l~~~~~-~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~----~----~~~~~~d~~~~~~------~~~  101 (219)
T 1vlm_A           42 VKCLLP-EGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR----G----VFVLKGTAENLPL------KDE  101 (219)
T ss_dssp             HHHHCC-SSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT----T----CEEEECBTTBCCS------CTT
T ss_pred             HHHhCC-CCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc----C----CEEEEcccccCCC------CCC
Confidence            334444 889999999999998877543     9999999999998876    2    7789999876554      467


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHHHhHhhhhCCCCCCCCCCCCCcccCcee
Q 025775          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESY  184 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  184 (248)
                      +||+|++..++++.    ++...+++++.++|+|||.+++..++....+.......    ..                  
T Consensus       102 ~fD~v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~----~~------------------  155 (219)
T 1vlm_A          102 SFDFALMVTTICFV----DDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKN----KE------------------  155 (219)
T ss_dssp             CEEEEEEESCGGGS----SCHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHT----TT------------------
T ss_pred             CeeEEEEcchHhhc----cCHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHH----hc------------------
Confidence            89999999999873    23578999999999999999999887654443332110    00                  


Q ss_pred             EEEecccCCCCCcceeeeEEEEccCccCCCcceechHHHHHHHHHcCcEEEEecC
Q 025775          185 VITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQN  239 (248)
Q Consensus       185 ~~~~~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~G~~~v~~~~  239 (248)
                                    +..+         .......+.+.+.++++++||+++....
T Consensus       156 --------------~~~~---------~~~~~~~~~~~l~~~l~~~Gf~~~~~~~  187 (219)
T 1vlm_A          156 --------------KSVF---------YKNARFFSTEELMDLMRKAGFEEFKVVQ  187 (219)
T ss_dssp             --------------C-CC---------STTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred             --------------Ccch---------hcccccCCHHHHHHHHHHCCCeEEEEec
Confidence                          0000         0012356889999999999999987654

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.67  E-value=2.1e-16  Score=138.29  Aligned_cols=110  Identities=21%  Similarity=0.188  Sum_probs=88.9

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhc-----C--CCceEEEEEcCCCCC------
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQ-----R--KNFIAEFFEADPCAE------   93 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~-----~--~~~~~~~~~~d~~~~------   93 (248)
                      ..++.+|||||||+|..+..++..  +..+|+|+|+|+.|++.|+++....     +  ...++.++++|+.+.      
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~  160 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE  160 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence            347889999999999998888775  3459999999999999999876532     1  113589999999774      


Q ss_pred             chhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775           94 NFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus        94 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      ++      ++++||+|++..++|+.    .+...+++++.++|||||.+++..+.
T Consensus       161 ~~------~~~~fD~V~~~~~l~~~----~d~~~~l~~~~r~LkpgG~l~i~~~~  205 (383)
T 4fsd_A          161 GV------PDSSVDIVISNCVCNLS----TNKLALFKEIHRVLRDGGELYFSDVY  205 (383)
T ss_dssp             CC------CTTCEEEEEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CC------CCCCEEEEEEccchhcC----CCHHHHHHHHHHHcCCCCEEEEEEec
Confidence            33      46799999999999973    23678999999999999999997543

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.67  E-value=5.8e-16  Score=136.82  Aligned_cols=150  Identities=19%  Similarity=0.276  Sum_probs=107.1

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      ..++.+|||||||+|..+..++..+. +++|+|+|+.|++.|+++    +    +....... .......++..+++||+
T Consensus       105 ~~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~----~----~~~~~~~~-~~~~~~~l~~~~~~fD~  174 (416)
T 4e2x_A          105 TGPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREK----G----IRVRTDFF-EKATADDVRRTEGPANV  174 (416)
T ss_dssp             CSSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTT----T----CCEECSCC-SHHHHHHHHHHHCCEEE
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHc----C----CCcceeee-chhhHhhcccCCCCEEE
Confidence            34788999999999999999988766 999999999999998876    1    11222111 11111112223589999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHHHhHhhhhCCCCCCCCCCCCCcccCceeEEEe
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITF  188 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  188 (248)
                      |++..++|++    ++...+++++.++|||||++++.+|+...+....                 .|..           
T Consensus       175 I~~~~vl~h~----~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~-----------------~~~~-----------  222 (416)
T 4e2x_A          175 IYAANTLCHI----PYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKT-----------------SFDQ-----------  222 (416)
T ss_dssp             EEEESCGGGC----TTHHHHHHHHHHHEEEEEEEEEEEECHHHHHHHT-----------------CGGG-----------
T ss_pred             EEECChHHhc----CCHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhc-----------------chhh-----------
Confidence            9999999983    3588999999999999999999999876543211                 0100           


Q ss_pred             cccCCCCCcceeeeEEEEccCccCCCcceechHHHHHHHHHcCcEEEEecCch
Q 025775          189 EVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLN  241 (248)
Q Consensus       189 ~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~G~~~v~~~~f~  241 (248)
                                  .|         ....+..+.+.+.++++++||+++....+.
T Consensus       223 ------------~~---------~~~~~~~s~~~l~~ll~~aGf~~~~~~~~~  254 (416)
T 4e2x_A          223 ------------IF---------DEHFFLFSATSVQGMAQRCGFELVDVQRLP  254 (416)
T ss_dssp             ------------CS---------TTCCEECCHHHHHHHHHHTTEEEEEEEEEC
T ss_pred             ------------hh---------hhhhhcCCHHHHHHHHHHcCCEEEEEEEcc
Confidence                        00         001124578899999999999999877654

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.66  E-value=4e-16  Score=130.94  Aligned_cols=104  Identities=20%  Similarity=0.187  Sum_probs=90.0

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      ++.+|||+|||+|..+..++..+. +|+|+|+|+.+++.|+++....+.  ++.++++|+.+..+       +++||+|+
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~-------~~~fD~i~  189 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANI-------QENYDFIV  189 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCC-------CSCEEEEE
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcCC--ceEEEEeccccccc-------cCCccEEE
Confidence            788999999999999999988866 999999999999999998876653  58999999865443       57899999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      +..++|+  .+.+....+++++.++|+|||.+++..
T Consensus       190 ~~~~~~~--~~~~~~~~~l~~~~~~LkpgG~l~i~~  223 (286)
T 3m70_A          190 STVVFMF--LNRERVPSIIKNMKEHTNVGGYNLIVA  223 (286)
T ss_dssp             ECSSGGG--SCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             Eccchhh--CCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            9999997  456678899999999999999977763

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.66  E-value=3e-16  Score=132.40  Aligned_cols=119  Identities=18%  Similarity=0.218  Sum_probs=90.7

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCC------------------------------
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRK------------------------------   79 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~------------------------------   79 (248)
                      ++.+|||||||+|..+..++.. +..+|+|+|+|+.|++.|+++......                              
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC  125 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence            5789999999999999988876 456999999999999999886543210                              


Q ss_pred             ---------------------------CceEEEEEcCCCCCchhhhhcccCCceeEEEeccchhhhc--CCHHHHHHHHH
Q 025775           80 ---------------------------NFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCF--ETEERARRLLQ  130 (248)
Q Consensus        80 ---------------------------~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~--~~~~~~~~~l~  130 (248)
                                                 ..++.|.++|+...... ..+...++||+|+|..+++|+.  .+.+....+++
T Consensus       126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~-~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~  204 (292)
T 3g07_A          126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDD-LVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR  204 (292)
T ss_dssp             ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHH-HHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhccCccccccccccccccccccccceEEecccccCccc-cccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence                                       13589999998764411 1111367899999999986632  14557889999


Q ss_pred             HHhccccCCcEEEEEecChh
Q 025775          131 NVSSLLKPGGYFLGITPDSS  150 (248)
Q Consensus       131 ~~~~~LkpgG~~i~~~~~~~  150 (248)
                      ++.++|+|||+|++...+..
T Consensus       205 ~~~~~LkpGG~lil~~~~~~  224 (292)
T 3g07_A          205 RIYRHLRPGGILVLEPQPWS  224 (292)
T ss_dssp             HHHHHEEEEEEEEEECCCHH
T ss_pred             HHHHHhCCCcEEEEecCCch
Confidence            99999999999999866654

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.66  E-value=4.7e-16  Score=127.34  Aligned_cols=117  Identities=17%  Similarity=-0.007  Sum_probs=88.6

Q ss_pred             HHHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhccc
Q 025775           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (248)
Q Consensus        23 ~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  102 (248)
                      .+.+....+|.+|||||||+|..+..++.....+++|+|+|+.+++.|+++....+  .++.++++|+.....    ...
T Consensus        52 ~~a~~~~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~--~~~~~~~~~a~~~~~----~~~  125 (236)
T 3orh_A           52 ALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAP----TLP  125 (236)
T ss_dssp             HHHHHHTTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGG----GSC
T ss_pred             HHHHhhccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCC--CceEEEeehHHhhcc----ccc
Confidence            34444567899999999999998888877766799999999999999999876654  357788888633111    114


Q ss_pred             CCceeEEEecc-chhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          103 ANQADLVCCFQ-HLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       103 ~~~fD~V~~~~-~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +++||.|+... ...+...+..+...+++++.++|||||+|++.
T Consensus       126 ~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~  169 (236)
T 3orh_A          126 DGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  169 (236)
T ss_dssp             TTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             ccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence            67899997532 11223345677899999999999999999875

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.66  E-value=9.6e-16  Score=121.31  Aligned_cols=105  Identities=19%  Similarity=0.127  Sum_probs=87.8

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      ++.+|||+|||+|..+..++..+. +++|+|+|+.+++.|+++....+. .++.+.++|+.+.++       +++||+|+
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~-------~~~~D~v~  102 (199)
T 2xvm_A           32 KPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSIENL-DNLHTRVVDLNNLTF-------DRQYDFIL  102 (199)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTC-TTEEEEECCGGGCCC-------CCCEEEEE
T ss_pred             CCCeEEEEcCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhCCC-CCcEEEEcchhhCCC-------CCCceEEE
Confidence            678999999999999998888755 999999999999999998765442 138899999865432       57899999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      +..++|+  .+.++...+++++.++|+|||.+++..
T Consensus       103 ~~~~l~~--~~~~~~~~~l~~~~~~L~~gG~l~~~~  136 (199)
T 2xvm_A          103 STVVLMF--LEAKTIPGLIANMQRCTKPGGYNLIVA  136 (199)
T ss_dssp             EESCGGG--SCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             Ecchhhh--CCHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence            9999987  445568899999999999999987753

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.65  E-value=1e-15  Score=126.85  Aligned_cols=119  Identities=14%  Similarity=0.048  Sum_probs=87.3

Q ss_pred             HHHHHHHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh
Q 025775           19 FAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ   98 (248)
Q Consensus        19 ~~~~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   98 (248)
                      |+...+-..-..++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|+++.....  ....+...+.....    
T Consensus        33 ~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml~~Ar~~~~~~~--v~~~~~~~~~~~~~----  105 (261)
T 3iv6_A           33 DRENDIFLENIVPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDDLAEALADRC--VTIDLLDITAEIPK----  105 (261)
T ss_dssp             HHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTSSSC--CEEEECCTTSCCCG----
T ss_pred             HHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhcc--ceeeeeeccccccc----
Confidence            444333333355889999999999999999988765 99999999999999998875431  12222222210000    


Q ss_pred             hcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775           99 MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus        99 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                        ..+++||+|++..++|+  ...++...++.++.++| |||.++++++.+
T Consensus       106 --~~~~~fD~Vv~~~~l~~--~~~~~~~~~l~~l~~lL-PGG~l~lS~~~g  151 (261)
T 3iv6_A          106 --ELAGHFDFVLNDRLINR--FTTEEARRACLGMLSLV-GSGTVRASVKLG  151 (261)
T ss_dssp             --GGTTCCSEEEEESCGGG--SCHHHHHHHHHHHHHHH-TTSEEEEEEEBS
T ss_pred             --ccCCCccEEEEhhhhHh--CCHHHHHHHHHHHHHhC-cCcEEEEEeccC
Confidence              02578999999999987  45677889999999999 999999996654

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.65  E-value=1.2e-15  Score=126.46  Aligned_cols=112  Identities=16%  Similarity=0.177  Sum_probs=90.4

Q ss_pred             HHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccC
Q 025775           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA  103 (248)
Q Consensus        24 li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  103 (248)
                      ++..+++++.+|||+|||+|..+..++..+. +++|+|+|+.|++.|+++..  .     .++++|+.+.++      .+
T Consensus        47 ~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~--~-----~~~~~d~~~~~~------~~  112 (260)
T 2avn_A           47 FLEEYLKNPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGV--K-----NVVEAKAEDLPF------PS  112 (260)
T ss_dssp             HHHHHCCSCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTC--S-----CEEECCTTSCCS------CT
T ss_pred             HHHHhcCCCCeEEEeCCCcCHHHHHHHHcCC-eEEEEeCCHHHHHHHHhhcC--C-----CEEECcHHHCCC------CC
Confidence            3445556889999999999999998877755 89999999999999988754  1     278899877654      46


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHH
Q 025775          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (248)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~  152 (248)
                      ++||+|++...+++....   ...+++++.++|+|||.+++.+++....
T Consensus       113 ~~fD~v~~~~~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~  158 (260)
T 2avn_A          113 GAFEAVLALGDVLSYVEN---KDKAFSEIRRVLVPDGLLIATVDNFYTF  158 (260)
T ss_dssp             TCEEEEEECSSHHHHCSC---HHHHHHHHHHHEEEEEEEEEEEEBHHHH
T ss_pred             CCEEEEEEcchhhhcccc---HHHHHHHHHHHcCCCeEEEEEeCChHHH
Confidence            789999998765543332   7889999999999999999999887543

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.64  E-value=6.5e-15  Score=115.72  Aligned_cols=118  Identities=15%  Similarity=0.143  Sum_probs=94.9

Q ss_pred             HHHHHh-cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCc-eEEEEEcCCCCCchhhhhc
Q 025775           23 ALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNF-IAEFFEADPCAENFETQMQ  100 (248)
Q Consensus        23 ~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~  100 (248)
                      .+++.. ..++.+|||+|||+|..+..++.. ..+++|+|+++.+++.|+++....+... ++.++++|+.+..      
T Consensus        43 ~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~------  115 (194)
T 1dus_A           43 ILVENVVVDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENV------  115 (194)
T ss_dssp             HHHHHCCCCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTC------
T ss_pred             HHHHHcccCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhccc------
Confidence            344444 347889999999999999888877 5599999999999999999887654322 3889999986632      


Q ss_pred             ccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhH
Q 025775          101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST  151 (248)
Q Consensus       101 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~  151 (248)
                       .+++||+|++...+|+   ..+....+++++.++|+|||.+++..++...
T Consensus       116 -~~~~~D~v~~~~~~~~---~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~  162 (194)
T 1dus_A          116 -KDRKYNKIITNPPIRA---GKEVLHRIIEEGKELLKDNGEIWVVIQTKQG  162 (194)
T ss_dssp             -TTSCEEEEEECCCSTT---CHHHHHHHHHHHHHHEEEEEEEEEEEESTHH
T ss_pred             -ccCCceEEEECCCccc---chhHHHHHHHHHHHHcCCCCEEEEEECCCCC
Confidence             2568999999887664   4667889999999999999999999887643

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.64  E-value=1.3e-15  Score=117.98  Aligned_cols=100  Identities=14%  Similarity=0.218  Sum_probs=83.2

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      ..++.+|||+|||+|..+..++.... +++|+|+++.+++.++++..      ++.+.++|   .++      .+++||+
T Consensus        15 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~------~v~~~~~d---~~~------~~~~~D~   78 (170)
T 3i9f_A           15 EGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEKFD------SVITLSDP---KEI------PDNSVDF   78 (170)
T ss_dssp             SSCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHHCT------TSEEESSG---GGS------CTTCEEE
T ss_pred             cCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHhCC------CcEEEeCC---CCC------CCCceEE
Confidence            45788999999999999998887765 99999999999999988721      37888888   233      4678999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      |++..++++.    ++...+++++.++|+|||.+++..+.
T Consensus        79 v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~~~~~~  114 (170)
T 3i9f_A           79 ILFANSFHDM----DDKQHVISEVKRILKDDGRVIIIDWR  114 (170)
T ss_dssp             EEEESCSTTC----SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEccchhcc----cCHHHHHHHHHHhcCCCCEEEEEEcC
Confidence            9999999873    24678999999999999999987443

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.63  E-value=3.8e-16  Score=129.53  Aligned_cols=101  Identities=12%  Similarity=0.060  Sum_probs=85.1

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      .++.+|||||||+|..+..++..+ .+|+|+|+|+.|++.|+.+.       ++.++++|+.+.++      .+++||+|
T Consensus        33 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~-------~~~~~~~d~~~~~~------~~~~fD~v   98 (261)
T 3ege_A           33 PKGSVIADIGAGTGGYSVALANQG-LFVYAVEPSIVMRQQAVVHP-------QVEWFTGYAENLAL------PDKSVDGV   98 (261)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHTTT-CEEEEECSCHHHHHSSCCCT-------TEEEECCCTTSCCS------CTTCBSEE
T ss_pred             CCCCEEEEEcCcccHHHHHHHhCC-CEEEEEeCCHHHHHHHHhcc-------CCEEEECchhhCCC------CCCCEeEE
Confidence            578999999999999999887744 59999999999998776543       38999999977665      46899999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      +|..++|+.    ++...+++++.++|| ||.+++..++.
T Consensus        99 ~~~~~l~~~----~~~~~~l~~~~~~Lk-gG~~~~~~~~~  133 (261)
T 3ege_A           99 ISILAIHHF----SHLEKSFQEMQRIIR-DGTIVLLTFDI  133 (261)
T ss_dssp             EEESCGGGC----SSHHHHHHHHHHHBC-SSCEEEEEECG
T ss_pred             EEcchHhhc----cCHHHHHHHHHHHhC-CcEEEEEEcCC
Confidence            999999874    447789999999999 99888876654

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.63  E-value=7.9e-16  Score=126.16  Aligned_cols=113  Identities=18%  Similarity=0.169  Sum_probs=90.8

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      ..++.+|||+|||+|..+..++.... +|+|+|+|+.|++.|+++....    ++.++++|+.+.+...... ....||+
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~~~----~~~~~~~d~~~~~~~~~~~-~~~~~d~  127 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENTAA----NISYRLLDGLVPEQAAQIH-SEIGDAN  127 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSCCT----TEEEEECCTTCHHHHHHHH-HHHCSCE
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCccc----CceEEECcccccccccccc-cccCccE
Confidence            45788999999999999999988776 8999999999999999887432    4899999997754422111 1134999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      |++..++|+  .+.++...+++++.++|+|||.+++..+..
T Consensus       128 v~~~~~~~~--~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  166 (245)
T 3ggd_A          128 IYMRTGFHH--IPVEKRELLGQSLRILLGKQGAMYLIELGT  166 (245)
T ss_dssp             EEEESSSTT--SCGGGHHHHHHHHHHHHTTTCEEEEEEECT
T ss_pred             EEEcchhhc--CCHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            999999998  455678899999999999999988775544

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.63  E-value=2.7e-15  Score=119.75  Aligned_cols=107  Identities=14%  Similarity=0.055  Sum_probs=88.3

Q ss_pred             HHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCc
Q 025775           26 KIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (248)
Q Consensus        26 ~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (248)
                      .....++.+|||+|||+|..+..++..+..+++|+|+|+.+++.|+++....+... +.+.++|+.+  .      .+++
T Consensus        55 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~--~------~~~~  125 (205)
T 3grz_A           55 ERAMVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYD-IALQKTSLLA--D------VDGK  125 (205)
T ss_dssp             HHHCSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCC-CEEEESSTTT--T------CCSC
T ss_pred             HHhccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEeccccc--c------CCCC
Confidence            33456889999999999999988887766799999999999999999887655322 8899999855  2      2578


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      ||+|++...+++       ...+++++.++|+|||.+++..+.
T Consensus       126 fD~i~~~~~~~~-------~~~~l~~~~~~L~~gG~l~~~~~~  161 (205)
T 3grz_A          126 FDLIVANILAEI-------LLDLIPQLDSHLNEDGQVIFSGID  161 (205)
T ss_dssp             EEEEEEESCHHH-------HHHHGGGSGGGEEEEEEEEEEEEE
T ss_pred             ceEEEECCcHHH-------HHHHHHHHHHhcCCCCEEEEEecC
Confidence            999999876664       578999999999999999987443

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.63  E-value=5.4e-15  Score=120.00  Aligned_cols=119  Identities=15%  Similarity=0.084  Sum_probs=91.2

Q ss_pred             HHHhcCCCCeEEEEcCC-CCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccC
Q 025775           25 IKIYSHPYVTVCDLYCG-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA  103 (248)
Q Consensus        25 i~~~~~~~~~VLDlGcG-~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  103 (248)
                      +....+++.+|||+||| +|..+..++.....+|+|+|+|+.+++.|+++....+.  ++.++++|+.....   +  .+
T Consensus        49 ~~~~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~---~--~~  121 (230)
T 3evz_A           49 LKTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGIIKG---V--VE  121 (230)
T ss_dssp             HHTTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCSSTT---T--CC
T ss_pred             hHhhcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchhhhh---c--cc
Confidence            55567789999999999 99999888776345999999999999999998876653  68999999743221   1  35


Q ss_pred             CceeEEEeccchhhhc---------------CCHHHHHHHHHHHhccccCCcEEEEEecChh
Q 025775          104 NQADLVCCFQHLQMCF---------------ETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (248)
Q Consensus       104 ~~fD~V~~~~~l~~~~---------------~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~  150 (248)
                      ++||+|++....+..-               ...+....+++++.++|+|||.+++.++...
T Consensus       122 ~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  183 (230)
T 3evz_A          122 GTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE  183 (230)
T ss_dssp             SCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH
T ss_pred             CceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH
Confidence            7899999875443210               0122347899999999999999999887664

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.63  E-value=8.3e-15  Score=117.25  Aligned_cols=117  Identities=12%  Similarity=0.025  Sum_probs=90.4

Q ss_pred             HHHHHHHh-cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhh
Q 025775           21 KTALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM   99 (248)
Q Consensus        21 ~~~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   99 (248)
                      ...++... ..++.+|||+|||+|..+..++.. ..+|+|+|+|+.+++.|+++....+...++.++++|+.+...    
T Consensus        44 ~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~----  118 (204)
T 3njr_A           44 RALTLAALAPRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALA----  118 (204)
T ss_dssp             HHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGT----
T ss_pred             HHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcc----
Confidence            33444444 457889999999999999888887 559999999999999999988765543358999999865211    


Q ss_pred             cccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHH
Q 025775          100 QEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIW  153 (248)
Q Consensus       100 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~  153 (248)
                        ...+||+|++..++        ... +++++.++|+|||.+++..++.+.+.
T Consensus       119 --~~~~~D~v~~~~~~--------~~~-~l~~~~~~LkpgG~lv~~~~~~~~~~  161 (204)
T 3njr_A          119 --DLPLPEAVFIGGGG--------SQA-LYDRLWEWLAPGTRIVANAVTLESET  161 (204)
T ss_dssp             --TSCCCSEEEECSCC--------CHH-HHHHHHHHSCTTCEEEEEECSHHHHH
T ss_pred             --cCCCCCEEEECCcc--------cHH-HHHHHHHhcCCCcEEEEEecCcccHH
Confidence              23579999876633        144 89999999999999999988765443

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.63  E-value=2.4e-14  Score=122.64  Aligned_cols=108  Identities=18%  Similarity=0.105  Sum_probs=90.6

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      .++.+|||+|||+|..+..++.. +..+++++|++ .+++.|+++....+...++.+.++|+.+.++       +..||+
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-------~~~~D~  235 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDY-------GNDYDL  235 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCC-------CSCEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCC-------CCCCcE
Confidence            56789999999999999888776 33599999999 9999999987765544459999999976544       345999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      |++..++|+  .+.++...+++++.++|+|||.+++..+
T Consensus       236 v~~~~~l~~--~~~~~~~~~l~~~~~~L~pgG~l~i~e~  272 (335)
T 2r3s_A          236 VLLPNFLHH--FDVATCEQLLRKIKTALAVEGKVIVFDF  272 (335)
T ss_dssp             EEEESCGGG--SCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEEcchhcc--CCHHHHHHHHHHHHHhCCCCcEEEEEee
Confidence            999999998  4677789999999999999999888744

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.63  E-value=5.2e-15  Score=115.07  Aligned_cols=117  Identities=12%  Similarity=0.113  Sum_probs=89.6

Q ss_pred             HHHHHHHh-cCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh
Q 025775           21 KTALIKIY-SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ   98 (248)
Q Consensus        21 ~~~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   98 (248)
                      +..++... ..++.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++....+...++ ++++|+.+ .+   
T Consensus        14 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~-~~---   88 (178)
T 3hm2_A           14 RALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPR-AF---   88 (178)
T ss_dssp             HHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTG-GG---
T ss_pred             HHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHh-hh---
Confidence            34444444 457889999999999999888776 3458999999999999999988766544357 88888744 22   


Q ss_pred             hcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhH
Q 025775           99 MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST  151 (248)
Q Consensus        99 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~  151 (248)
                       +...++||+|++...+++        ..+++++.++|+|||.+++..+..+.
T Consensus        89 -~~~~~~~D~i~~~~~~~~--------~~~l~~~~~~L~~gG~l~~~~~~~~~  132 (178)
T 3hm2_A           89 -DDVPDNPDVIFIGGGLTA--------PGVFAAAWKRLPVGGRLVANAVTVES  132 (178)
T ss_dssp             -GGCCSCCSEEEECC-TTC--------TTHHHHHHHTCCTTCEEEEEECSHHH
T ss_pred             -hccCCCCCEEEECCcccH--------HHHHHHHHHhcCCCCEEEEEeecccc
Confidence             112378999999887765        56899999999999999998776543

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.62  E-value=5.6e-16  Score=121.27  Aligned_cols=106  Identities=10%  Similarity=0.084  Sum_probs=83.9

Q ss_pred             HhcCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCc
Q 025775           27 IYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (248)
Q Consensus        27 ~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (248)
                      .++++..+|||||||+|.++..++.. +..+|+|+|+|+.|++.++++....+...++.+  +|.... .      .+++
T Consensus        45 ~~l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~-~------~~~~  115 (200)
T 3fzg_A           45 GNIKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESD-V------YKGT  115 (200)
T ss_dssp             HHSCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHH-H------TTSE
T ss_pred             hhcCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--eccccc-C------CCCC
Confidence            34577889999999999999888766 334999999999999999999887664444555  565221 1      4788


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      ||+|.+...+|++    ++.+..+..+.+.|+|||+||-.
T Consensus       116 ~DvVLa~k~LHlL----~~~~~al~~v~~~L~pggvfISf  151 (200)
T 3fzg_A          116 YDVVFLLKMLPVL----KQQDVNILDFLQLFHTQNFVISF  151 (200)
T ss_dssp             EEEEEEETCHHHH----HHTTCCHHHHHHTCEEEEEEEEE
T ss_pred             cChhhHhhHHHhh----hhhHHHHHHHHHHhCCCCEEEEe
Confidence            9999999999982    55666777999999999988754

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.62  E-value=1.4e-14  Score=115.50  Aligned_cols=117  Identities=11%  Similarity=0.010  Sum_probs=92.0

Q ss_pred             HHHHHHHHh-cCCCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh
Q 025775           20 AKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET   97 (248)
Q Consensus        20 ~~~~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   97 (248)
                      ++..++... ..++.+|||+|||+|..+..++... ..+++|+|+|+.+++.|+++....+. .++.++++|+.+...  
T Consensus        28 i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~--  104 (204)
T 3e05_A           28 VRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFAPEGLD--  104 (204)
T ss_dssp             HHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCTTTTCT--
T ss_pred             HHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCChhhhhh--
Confidence            334444444 4578999999999999998888774 46999999999999999998766543 358999999855322  


Q ss_pred             hhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChh
Q 025775           98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (248)
Q Consensus        98 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~  150 (248)
                          ...+||+|++...++       ....+++++.++|+|||.+++..+...
T Consensus       105 ----~~~~~D~i~~~~~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~  146 (204)
T 3e05_A          105 ----DLPDPDRVFIGGSGG-------MLEEIIDAVDRRLKSEGVIVLNAVTLD  146 (204)
T ss_dssp             ----TSCCCSEEEESCCTT-------CHHHHHHHHHHHCCTTCEEEEEECBHH
T ss_pred             ----cCCCCCEEEECCCCc-------CHHHHHHHHHHhcCCCeEEEEEecccc
Confidence                236799999887655       367899999999999999999877653

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.62  E-value=2.6e-14  Score=123.42  Aligned_cols=107  Identities=25%  Similarity=0.220  Sum_probs=90.1

Q ss_pred             CCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        32 ~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      +.+|||||||+|..+..++.. +..+++++|+ +.+++.|+++....+...++.++.+|+.+.+..     .++.||+|+
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-----~~~~~D~v~  253 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNF-----EGGAADVVM  253 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGG-----TTCCEEEEE
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCccc-----CCCCccEEE
Confidence            789999999999999988876 3458999999 889999999887655445699999999775410     145699999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      +..++|+  .+.+....+++++++.|+|||.+++..
T Consensus       254 ~~~vlh~--~~~~~~~~~l~~~~~~L~pgG~l~i~e  287 (352)
T 3mcz_A          254 LNDCLHY--FDAREAREVIGHAAGLVKPGGALLILT  287 (352)
T ss_dssp             EESCGGG--SCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             Eeccccc--CCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            9999998  567778999999999999999998873

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.61  E-value=5.6e-15  Score=122.44  Aligned_cols=125  Identities=19%  Similarity=0.159  Sum_probs=94.0

Q ss_pred             HHHHHHHhcC---CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh
Q 025775           21 KTALIKIYSH---PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET   97 (248)
Q Consensus        21 ~~~li~~~~~---~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   97 (248)
                      -+.++..++.   ++.+|||+|||+|..+..++.....+++|+|+++.+++.|++.....+...++.++++|+.+...  
T Consensus        36 d~~ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~--  113 (259)
T 3lpm_A           36 DAVLLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITD--  113 (259)
T ss_dssp             HHHHHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGG--
T ss_pred             HHHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhh--
Confidence            3556666654   68899999999999999888776569999999999999999998876655569999999865321  


Q ss_pred             hhcccCCceeEEEeccchhhh----------------cCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775           98 QMQEKANQADLVCCFQHLQMC----------------FETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus        98 ~~~~~~~~fD~V~~~~~l~~~----------------~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      .+  ..++||+|++....+..                .........+++.+.++|+|||.+++..+..
T Consensus       114 ~~--~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  179 (259)
T 3lpm_A          114 LI--PKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPE  179 (259)
T ss_dssp             TS--CTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred             hh--ccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHH
Confidence            11  35789999996433211                0112456789999999999999999986543

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.61  E-value=1.8e-15  Score=124.77  Aligned_cols=109  Identities=23%  Similarity=0.266  Sum_probs=89.1

Q ss_pred             HHHHh-cCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc
Q 025775           24 LIKIY-SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE  101 (248)
Q Consensus        24 li~~~-~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  101 (248)
                      ++... ..++.+|||+|||+|..+..++.. +..+++|+|+|+.|++.++++..      ++.+.++|+.+.+       
T Consensus        25 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~------~~~~~~~d~~~~~-------   91 (259)
T 2p35_A           25 LLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLP------NTNFGKADLATWK-------   91 (259)
T ss_dssp             HHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHST------TSEEEECCTTTCC-------
T ss_pred             HHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCC------CcEEEECChhhcC-------
Confidence            44444 347789999999999999888776 34589999999999999988722      3789999986643       


Q ss_pred             cCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       102 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      .+++||+|++..++|++    ++...+++++.++|+|||.+++.+++.
T Consensus        92 ~~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~~~~~~~  135 (259)
T 2p35_A           92 PAQKADLLYANAVFQWV----PDHLAVLSQLMDQLESGGVLAVQMPDN  135 (259)
T ss_dssp             CSSCEEEEEEESCGGGS----TTHHHHHHHHGGGEEEEEEEEEEEECC
T ss_pred             ccCCcCEEEEeCchhhC----CCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence            25789999999999983    347789999999999999999998764

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.60  E-value=1.6e-14  Score=121.03  Aligned_cols=105  Identities=10%  Similarity=-0.035  Sum_probs=83.9

Q ss_pred             cCCCCeEEEEcCCCCccHhHH-HHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775           29 SHPYVTVCDLYCGAGVDVDKW-ETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l-~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      ++++.+|||||||+|..+..+ +....++|+|+|+|+.|++.|+++.+..+. .++.++++|+.+  +      ++++||
T Consensus       120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~--l------~d~~FD  190 (298)
T 3fpf_A          120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETV--I------DGLEFD  190 (298)
T ss_dssp             CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGG--G------GGCCCS
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhh--C------CCCCcC
Confidence            568999999999999876444 443445999999999999999998876654 569999999854  2      257899


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      +|++...       .++...+++++.++|||||.+++...+.
T Consensus       191 vV~~~a~-------~~d~~~~l~el~r~LkPGG~Lvv~~~~~  225 (298)
T 3fpf_A          191 VLMVAAL-------AEPKRRVFRNIHRYVDTETRIIYRTYTG  225 (298)
T ss_dssp             EEEECTT-------CSCHHHHHHHHHHHCCTTCEEEEEECCG
T ss_pred             EEEECCC-------ccCHHHHHHHHHHHcCCCcEEEEEcCcc
Confidence            9987553       1346789999999999999999886543

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.60  E-value=6.9e-15  Score=126.72  Aligned_cols=107  Identities=15%  Similarity=0.091  Sum_probs=87.3

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      ..++.+|||||||+|..+..++..+..+|+|+|+|+ |++.|+++....+...++.++++|+.+.++      ++++||+
T Consensus        62 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~------~~~~~D~  134 (340)
T 2fyt_A           62 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHL------PVEKVDV  134 (340)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC------SCSCEEE
T ss_pred             hcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcC------CCCcEEE
Confidence            457889999999999998888887766999999997 999999988776544569999999977654      3578999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEE
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i  143 (248)
                      |++....+ .+........++.++.++|+|||.++
T Consensus       135 Ivs~~~~~-~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          135 IISEWMGY-FLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             EEECCCBT-TBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEcCchh-hccCHHHHHHHHHHHHhhcCCCcEEE
Confidence            99876322 23345567889999999999999997

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.60  E-value=2.5e-14  Score=123.98  Aligned_cols=113  Identities=13%  Similarity=0.091  Sum_probs=92.0

Q ss_pred             HHHHHh-cCCCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhc
Q 025775           23 ALIKIY-SHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ  100 (248)
Q Consensus        23 ~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  100 (248)
                      .++..+ ..++.+|||||||+|..+..++... ..+++++|+ +.+++.|+++....+...++.++++|+.+.++     
T Consensus       181 ~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----  254 (359)
T 1x19_A          181 LLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY-----  254 (359)
T ss_dssp             HHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCC-----
T ss_pred             HHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCC-----
Confidence            444444 3477899999999999999888763 348999999 99999999988765544459999999977544     


Q ss_pred             ccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775          101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       101 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                        + .+|+|++..++|+  .+.+....+++++.++|+|||.+++..
T Consensus       255 --~-~~D~v~~~~vlh~--~~d~~~~~~l~~~~~~L~pgG~l~i~e  295 (359)
T 1x19_A          255 --P-EADAVLFCRILYS--ANEQLSTIMCKKAFDAMRSGGRLLILD  295 (359)
T ss_dssp             --C-CCSEEEEESCGGG--SCHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred             --C-CCCEEEEechhcc--CCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence              2 2399999999997  466778999999999999999998773

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.60  E-value=2.4e-15  Score=130.01  Aligned_cols=107  Identities=14%  Similarity=0.105  Sum_probs=88.5

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      .++.+|||+|||+|..+..++..+..+|+|+|+|+ |++.|+++....+...++.++++|+.+.++      +.++||+|
T Consensus        65 ~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~------~~~~fD~I  137 (349)
T 3q7e_A           65 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVEL------PVEKVDII  137 (349)
T ss_dssp             HTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC------SSSCEEEE
T ss_pred             CCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHccC------CCCceEEE
Confidence            47899999999999999999888777999999994 999999988876655569999999987655      46899999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEE
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLG  144 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~  144 (248)
                      ++....+. +........++..+.++|||||+++.
T Consensus       138 is~~~~~~-l~~~~~~~~~l~~~~r~LkpgG~li~  171 (349)
T 3q7e_A          138 ISEWMGYC-LFYESMLNTVLHARDKWLAPDGLIFP  171 (349)
T ss_dssp             EECCCBBT-BTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             EEcccccc-ccCchhHHHHHHHHHHhCCCCCEEcc
Confidence            98664333 23345678899999999999999863

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.60  E-value=5.6e-15  Score=115.10  Aligned_cols=111  Identities=12%  Similarity=0.039  Sum_probs=85.5

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      .++.+|||+|||+|..+..++..+..+++|+|+|+.+++.|+++....+...++.++++|+.+.     ++...++||+|
T Consensus        30 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~fD~i  104 (177)
T 2esr_A           30 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERA-----IDCLTGRFDLV  104 (177)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHH-----HHHBCSCEEEE
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHh-----HHhhcCCCCEE
Confidence            4678999999999999988888766699999999999999999887655434589999987431     11134679999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHh--ccccCCcEEEEEecChh
Q 025775          110 CCFQHLQMCFETEERARRLLQNVS--SLLKPGGYFLGITPDSS  150 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~--~~LkpgG~~i~~~~~~~  150 (248)
                      ++....+.     .....+++.+.  ++|+|||.+++.++...
T Consensus       105 ~~~~~~~~-----~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~  142 (177)
T 2esr_A          105 FLDPPYAK-----ETIVATIEALAAKNLLSEQVMVVCETDKTV  142 (177)
T ss_dssp             EECCSSHH-----HHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             EECCCCCc-----chHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence            98765432     23455666665  99999999999876653

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.59  E-value=2e-14  Score=133.88  Aligned_cols=112  Identities=20%  Similarity=0.326  Sum_probs=93.7

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCC--CeEEEEeCChHHHHHHHHHHHhcC-----CCceEEEEEcCCCCCchhhhhccc
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALI--ANYIGIDVATSGIGEARDTWENQR-----KNFIAEFFEADPCAENFETQMQEK  102 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~--~~v~giDis~~~l~~a~~~~~~~~-----~~~~~~~~~~d~~~~~~~~~~~~~  102 (248)
                      .++.+|||||||+|..+..++....  .+|+|+|+|+.|++.|+++.....     ...++.++++|+.+.++      .
T Consensus       720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~------~  793 (950)
T 3htx_A          720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDS------R  793 (950)
T ss_dssp             SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCT------T
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCc------c
Confidence            3788999999999999988877652  599999999999999998765321     12369999999988665      4


Q ss_pred             CCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChh
Q 025775          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (248)
Q Consensus       103 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~  150 (248)
                      +++||+|+|..++|+  ...+....+++++.++|+|| .+++++|+.+
T Consensus       794 d~sFDlVV~~eVLeH--L~dp~l~~~L~eI~RvLKPG-~LIISTPN~e  838 (950)
T 3htx_A          794 LHDVDIGTCLEVIEH--MEEDQACEFGEKVLSLFHPK-LLIVSTPNYE  838 (950)
T ss_dssp             SCSCCEEEEESCGGG--SCHHHHHHHHHHHHHTTCCS-EEEEEECBGG
T ss_pred             cCCeeEEEEeCchhh--CChHHHHHHHHHHHHHcCCC-EEEEEecCch
Confidence            688999999999998  45667778999999999999 8888899874

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.59  E-value=1.6e-14  Score=113.10  Aligned_cols=114  Identities=17%  Similarity=0.063  Sum_probs=85.0

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      .++.+|||+|||+|..+..++..+..+++|+|+|+.+++.|++.....+...++.++++|+.+.  ...++...++||+|
T Consensus        43 ~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~fD~i  120 (187)
T 2fhp_A           43 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRA--LEQFYEEKLQFDLV  120 (187)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH--HHHHHHTTCCEEEE
T ss_pred             cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHH--HHHHHhcCCCCCEE
Confidence            3688999999999999988877666699999999999999999887655334589999997441  11111125789999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHH--hccccCCcEEEEEecChh
Q 025775          110 CCFQHLQMCFETEERARRLLQNV--SSLLKPGGYFLGITPDSS  150 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~--~~~LkpgG~~i~~~~~~~  150 (248)
                      ++....+.  ...   ...++.+  .++|+|||.+++.++...
T Consensus       121 ~~~~~~~~--~~~---~~~~~~l~~~~~L~~gG~l~~~~~~~~  158 (187)
T 2fhp_A          121 LLDPPYAK--QEI---VSQLEKMLERQLLTNEAVIVCETDKTV  158 (187)
T ss_dssp             EECCCGGG--CCH---HHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             EECCCCCc--hhH---HHHHHHHHHhcccCCCCEEEEEeCCcc
Confidence            99876442  222   3444445  889999999999877653

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.59  E-value=2.1e-14  Score=112.58  Aligned_cols=110  Identities=16%  Similarity=0.135  Sum_probs=88.2

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      ..++.+|||+|||+|..+..++... .+++|+|+|+.+++.|+++....+...++.+.++|+.+ .+    + ..++||+
T Consensus        31 ~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~----~-~~~~~D~  103 (192)
T 1l3i_A           31 PGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-AL----C-KIPDIDI  103 (192)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-HH----T-TSCCEEE
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-hc----c-cCCCCCE
Confidence            4578899999999999988887766 69999999999999999988765433358899998743 12    1 1258999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHH
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~  152 (248)
                      |++...+++       ...+++++.++|+|||.+++..++....
T Consensus       104 v~~~~~~~~-------~~~~l~~~~~~l~~gG~l~~~~~~~~~~  140 (192)
T 1l3i_A          104 AVVGGSGGE-------LQEILRIIKDKLKPGGRIIVTAILLETK  140 (192)
T ss_dssp             EEESCCTTC-------HHHHHHHHHHTEEEEEEEEEEECBHHHH
T ss_pred             EEECCchHH-------HHHHHHHHHHhcCCCcEEEEEecCcchH
Confidence            999876654       5789999999999999999998776443

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.59  E-value=1.3e-14  Score=116.05  Aligned_cols=108  Identities=11%  Similarity=0.051  Sum_probs=86.7

Q ss_pred             HHHHHh-cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc
Q 025775           23 ALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE  101 (248)
Q Consensus        23 ~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  101 (248)
                      .++... ..++.+|||+|||+|..+..++... .+++|+|+|+.+++.|+++....+.. ++.+.++|+.+...      
T Consensus        68 ~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~------  139 (210)
T 3lbf_A           68 RMTELLELTPQSRVLEIGTGSGYQTAILAHLV-QHVCSVERIKGLQWQARRRLKNLDLH-NVSTRHGDGWQGWQ------  139 (210)
T ss_dssp             HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCG------
T ss_pred             HHHHhcCCCCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEecCHHHHHHHHHHHHHcCCC-ceEEEECCcccCCc------
Confidence            334433 4578999999999999998888774 59999999999999999988765432 48999999866433      


Q ss_pred             cCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775          102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       102 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      ..++||+|++..+++++..          ++.++|+|||.+++.+++
T Consensus       140 ~~~~~D~i~~~~~~~~~~~----------~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          140 ARAPFDAIIVTAAPPEIPT----------ALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             GGCCEEEEEESSBCSSCCT----------HHHHTEEEEEEEEEEECS
T ss_pred             cCCCccEEEEccchhhhhH----------HHHHhcccCcEEEEEEcC
Confidence            3578999999998887332          578899999999999776

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.59  E-value=2.1e-14  Score=115.48  Aligned_cols=117  Identities=15%  Similarity=0.062  Sum_probs=87.8

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      ..++.+|||||||+|..+..++... ..+++|+|+|+.+++.|+++....+. .++.++++|+.+..  ..+  .+++||
T Consensus        39 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~--~~~--~~~~~D  113 (214)
T 1yzh_A           39 GNDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLT--DYF--EDGEID  113 (214)
T ss_dssp             TSCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGG--GTS--CTTCCS
T ss_pred             CCCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC-CCEEEEeCCHHHHH--hhc--CCCCCC
Confidence            3467899999999999998887763 45999999999999999998866543 35899999997633  111  357899


Q ss_pred             EEEeccchhhhcC----CHHHHHHHHHHHhccccCCcEEEEEecChh
Q 025775          108 LVCCFQHLQMCFE----TEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (248)
Q Consensus       108 ~V~~~~~l~~~~~----~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~  150 (248)
                      +|++.+...+.-.    .......+++++.++|+|||.+++.+.+..
T Consensus       114 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  160 (214)
T 1yzh_A          114 RLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRG  160 (214)
T ss_dssp             EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHH
T ss_pred             EEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHH
Confidence            9998865432000    000135799999999999999999876653

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.59  E-value=9.2e-14  Score=120.85  Aligned_cols=107  Identities=19%  Similarity=0.123  Sum_probs=88.9

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      .++.+|||+|||+|..+..++... ..+++++|+ +.+++.|+++....+...++.++++|+.+ ++       +..||+
T Consensus       181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~-------~~~~D~  251 (374)
T 1qzz_A          181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PL-------PVTADV  251 (374)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CC-------SCCEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cC-------CCCCCE
Confidence            467899999999999998887763 348999999 99999999988765544469999999865 22       234999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      |++..++|+  .+.+....+++++.++|+|||.+++..+
T Consensus       252 v~~~~vl~~--~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          252 VLLSFVLLN--WSDEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             EEEESCGGG--SCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEEeccccC--CCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            999999997  4566677999999999999999988755

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.58  E-value=5.2e-15  Score=129.19  Aligned_cols=107  Identities=16%  Similarity=0.102  Sum_probs=89.2

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      .++.+|||||||+|..+..++..+..+|+|+|+| .|++.|+++....+...++.++++|+.+..+       +++||+|
T Consensus        62 ~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-------~~~~D~I  133 (376)
T 3r0q_C           62 FEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISL-------PEKVDVI  133 (376)
T ss_dssp             TTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCC-------SSCEEEE
T ss_pred             CCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCc-------CCcceEE
Confidence            4789999999999999998888877799999999 9999999988877655569999999966554       3789999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      ++....+. .........++..+.++|+|||++++.
T Consensus       134 v~~~~~~~-l~~e~~~~~~l~~~~~~LkpgG~li~~  168 (376)
T 3r0q_C          134 ISEWMGYF-LLRESMFDSVISARDRWLKPTGVMYPS  168 (376)
T ss_dssp             EECCCBTT-BTTTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred             EEcChhhc-ccchHHHHHHHHHHHhhCCCCeEEEEe
Confidence            99664443 444556888999999999999999764

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.58  E-value=3e-15  Score=119.52  Aligned_cols=111  Identities=12%  Similarity=0.029  Sum_probs=84.4

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCC-ceEEEEEcCCCCCchhhhhcccCCc-eeE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKANQ-ADL  108 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~-fD~  108 (248)
                      ++.+|||+|||+|..+..++..+..+|+|+|+|+.|++.|+++....+.. .++.++++|+.+...  ..  .+++ ||+
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~--~~--~~~~~fD~  128 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLK--QP--QNQPHFDV  128 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTT--SC--CSSCCEEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHH--hh--ccCCCCCE
Confidence            67899999999999988877776679999999999999999988765432 358999999743111  00  2467 999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHH--hccccCCcEEEEEecChh
Q 025775          109 VCCFQHLQMCFETEERARRLLQNV--SSLLKPGGYFLGITPDSS  150 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~--~~~LkpgG~~i~~~~~~~  150 (248)
                      |++...++     ......+++.+  .++|+|||.+++......
T Consensus       129 I~~~~~~~-----~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~  167 (201)
T 2ift_A          129 VFLDPPFH-----FNLAEQAISLLCENNWLKPNALIYVETEKDK  167 (201)
T ss_dssp             EEECCCSS-----SCHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred             EEECCCCC-----CccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence            99877643     22456677777  678999999999866543

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.58  E-value=1.1e-14  Score=121.56  Aligned_cols=108  Identities=16%  Similarity=0.143  Sum_probs=81.7

Q ss_pred             CCCeEEEEcCCCCc----cHhHHHHc-C----CCeEEEEeCChHHHHHHHHHHHh-----------------------cC
Q 025775           31 PYVTVCDLYCGAGV----DVDKWETA-L----IANYIGIDVATSGIGEARDTWEN-----------------------QR   78 (248)
Q Consensus        31 ~~~~VLDlGcG~G~----~~~~l~~~-~----~~~v~giDis~~~l~~a~~~~~~-----------------------~~   78 (248)
                      ++.+|||+|||||.    .+..++.. +    ..+|+|+|+|+.||+.|++..-.                       .+
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            45799999999998    33344433 2    13899999999999999875310                       00


Q ss_pred             -C------CceEEEEEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775           79 -K------NFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus        79 -~------~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                       .      ...+.|.++|+.+.++.     ..++||+|+|..+++|  .+.+...++++++++.|+|||++++.
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~-----~~~~fDlI~crnvliy--f~~~~~~~vl~~~~~~L~pgG~L~lg  251 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYN-----VPGPFDAIFCRNVMIY--FDKTTQEDILRRFVPLLKPDGLLFAG  251 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCC-----CCCCEEEEEECSSGGG--SCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             ceeechhhcccCeEEecccCCCCCC-----cCCCeeEEEECCchHh--CCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence             0      01489999999775441     1468999999999998  35777899999999999999999874

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.58  E-value=1.2e-14  Score=116.79  Aligned_cols=107  Identities=11%  Similarity=-0.009  Sum_probs=78.7

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      ++++.+|||+|||+|..+..++.. +.++|+|+|+|+.|++.+.+......   ++.++++|+........   ..++||
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~---~v~~~~~d~~~~~~~~~---~~~~fD  128 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN---NIIPLLFDASKPWKYSG---IVEKVD  128 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS---SEEEECSCTTCGGGTTT---TCCCEE
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCC---CeEEEEcCCCCchhhcc---ccccee
Confidence            457889999999999988888765 33589999999998876665544332   37888888866311000   147899


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      +|++...      .......+++++.++|||||.|++.++
T Consensus       129 ~V~~~~~------~~~~~~~~l~~~~r~LkpgG~l~i~~~  162 (210)
T 1nt2_A          129 LIYQDIA------QKNQIEILKANAEFFLKEKGEVVIMVK  162 (210)
T ss_dssp             EEEECCC------STTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEEecc------ChhHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            9998742      123455678999999999999999853

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.57  E-value=5.8e-15  Score=119.41  Aligned_cols=117  Identities=15%  Similarity=0.157  Sum_probs=86.8

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      ..++.+|||||||+|..+..++... ...|+|+|+|+.+++.|+++....+. .++.++++|+.+. +...+  ++++||
T Consensus        32 ~~~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l-~nv~~~~~Da~~~-l~~~~--~~~~~d  107 (218)
T 3dxy_A           32 GREAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGL-SNLRVMCHDAVEV-LHKMI--PDNSLR  107 (218)
T ss_dssp             SSCCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTC-SSEEEECSCHHHH-HHHHS--CTTCEE
T ss_pred             CCCCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCC-CcEEEEECCHHHH-HHHHc--CCCChh
Confidence            3467899999999999999988764 35899999999999999998766542 2489999997441 00001  468999


Q ss_pred             EEEeccchhhhcCCHHHH------HHHHHHHhccccCCcEEEEEecChhH
Q 025775          108 LVCCFQHLQMCFETEERA------RRLLQNVSSLLKPGGYFLGITPDSST  151 (248)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~------~~~l~~~~~~LkpgG~~i~~~~~~~~  151 (248)
                      .|++.+...+  ......      ..+++++.++|||||.+++.+.+...
T Consensus       108 ~v~~~~~~p~--~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~  155 (218)
T 3dxy_A          108 MVQLFFPDPW--HKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPY  155 (218)
T ss_dssp             EEEEESCCCC--CSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHH
T ss_pred             eEEEeCCCCc--cchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHH
Confidence            9998764432  111111      25999999999999999998876643

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.57  E-value=4e-14  Score=118.36  Aligned_cols=112  Identities=13%  Similarity=0.141  Sum_probs=86.2

Q ss_pred             CCCeEEEEcCCC---CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh-------hhh
Q 025775           31 PYVTVCDLYCGA---GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE-------TQM   99 (248)
Q Consensus        31 ~~~~VLDlGcG~---G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-------~~~   99 (248)
                      +..+|||||||+   |..+..+... +..+|+|+|+|+.|++.|+++....   .++.++++|+.+....       ..+
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~---~~v~~~~~D~~~~~~~~~~~~~~~~~  153 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKD---PNTAVFTADVRDPEYILNHPDVRRMI  153 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTC---TTEEEEECCTTCHHHHHHSHHHHHHC
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCC---CCeEEEEeeCCCchhhhccchhhccC
Confidence            447999999999   9776555443 3459999999999999999987542   2489999999764311       111


Q ss_pred             cccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          100 QEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       100 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                        ...+||+|++..++|++  +.+....+++++.++|+|||+|+++....
T Consensus       154 --d~~~~d~v~~~~vlh~~--~d~~~~~~l~~~~~~L~pGG~l~i~~~~~  199 (274)
T 2qe6_A          154 --DFSRPAAIMLVGMLHYL--SPDVVDRVVGAYRDALAPGSYLFMTSLVD  199 (274)
T ss_dssp             --CTTSCCEEEETTTGGGS--CTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred             --CCCCCEEEEEechhhhC--CcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence              12489999999999983  33367889999999999999999985543

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.57  E-value=1.3e-14  Score=125.41  Aligned_cols=106  Identities=16%  Similarity=0.087  Sum_probs=85.3

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      .++.+|||||||+|..+..++..+..+|+|+|+|+ +++.|+++....+...++.++++|+.+.++       +++||+|
T Consensus        49 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~-------~~~~D~I  120 (348)
T 2y1w_A           49 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSL-------PEQVDII  120 (348)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC-------SSCEEEE
T ss_pred             CCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCC-------CCceeEE
Confidence            47889999999999999888887767999999996 889998888766544569999999977543       4689999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      ++....++.  ..+.....+.++.++|+|||.+++.
T Consensus       121 vs~~~~~~~--~~~~~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          121 ISEPMGYML--FNERMLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             EECCCBTTB--TTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred             EEeCchhcC--ChHHHHHHHHHHHhhcCCCeEEEEe
Confidence            998765542  2334566777899999999999865

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.57  E-value=1.4e-14  Score=124.26  Aligned_cols=106  Identities=17%  Similarity=0.111  Sum_probs=86.5

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      .++.+|||+|||+|..+..++..+..+|+|+|+| .|++.|+++....+...++.++++|+.+.++      +.++||+|
T Consensus        37 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~------~~~~~D~I  109 (328)
T 1g6q_1           37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHL------PFPKVDII  109 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCC------SSSCEEEE
T ss_pred             cCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccC------CCCcccEE
Confidence            4788999999999999888887776799999999 5999999988776655569999999977654      35789999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEE
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i  143 (248)
                      ++....+. +.....+..++.++.++|+|||.++
T Consensus       110 vs~~~~~~-l~~~~~~~~~l~~~~~~LkpgG~li  142 (328)
T 1g6q_1          110 ISEWMGYF-LLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             EECCCBTT-BSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             EEeCchhh-cccHHHHHHHHHHHHhhcCCCeEEE
Confidence            98754332 2344557789999999999999997

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.57  E-value=2.1e-13  Score=118.00  Aligned_cols=108  Identities=19%  Similarity=0.153  Sum_probs=88.8

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      .++.+|||+|||+|..+..++... ..+++++|+ +.+++.|+++....+...++.++++|+.+ .+       +..||+
T Consensus       182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~-------~~~~D~  252 (360)
T 1tw3_A          182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PL-------PRKADA  252 (360)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CC-------SSCEEE
T ss_pred             ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CC-------CCCccE
Confidence            467899999999999998887763 348999999 99999999988765544469999999865 22       234999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      |++..++|+  .+.+....+++++.++|+|||.+++..+.
T Consensus       253 v~~~~vl~~--~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  290 (360)
T 1tw3_A          253 IILSFVLLN--WPDHDAVRILTRCAEALEPGGRILIHERD  290 (360)
T ss_dssp             EEEESCGGG--SCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EEEcccccC--CCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence            999999997  45667789999999999999999987544

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.56  E-value=2.5e-14  Score=116.29  Aligned_cols=106  Identities=14%  Similarity=0.086  Sum_probs=84.7

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      ++||.+|||+|||+|.++..++..  +.++|+|+|+++.|++.++++....+   ++..+..|+......   .....++
T Consensus        75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~---ni~~V~~d~~~p~~~---~~~~~~v  148 (233)
T 4df3_A           75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRR---NIFPILGDARFPEKY---RHLVEGV  148 (233)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCT---TEEEEESCTTCGGGG---TTTCCCE
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhc---CeeEEEEeccCcccc---ccccceE
Confidence            469999999999999999999875  45699999999999999988776543   388889988764332   1246789


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      |+|++....+      ++...++.++.+.|||||.+++.+
T Consensus       149 DvVf~d~~~~------~~~~~~l~~~~r~LKpGG~lvI~i  182 (233)
T 4df3_A          149 DGLYADVAQP------EQAAIVVRNARFFLRDGGYMLMAI  182 (233)
T ss_dssp             EEEEECCCCT------THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEEeccCC------hhHHHHHHHHHHhccCCCEEEEEE
Confidence            9998765433      346789999999999999999874

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.56  E-value=6.7e-14  Score=122.19  Aligned_cols=117  Identities=14%  Similarity=0.093  Sum_probs=94.1

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      ++.+|||+|||+|..+..++..+. +|+|+|+|+.+++.|+++....+.  ++.++++|+.+...      ..++||+|+
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~g~-~V~gvDis~~al~~A~~n~~~~~~--~v~~~~~D~~~~~~------~~~~fD~Ii  303 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKGLEANAL--KAQALHSDVDEALT------EEARFDIIV  303 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHHHHHHHHHHHTTC--CCEEEECSTTTTSC------TTCCEEEEE
T ss_pred             CCCEEEEEeeeCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCC--CeEEEEcchhhccc------cCCCeEEEE
Confidence            678999999999999999988765 999999999999999998876553  38899999976543      247899999


Q ss_pred             eccchhhhc-CCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHH
Q 025775          111 CFQHLQMCF-ETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (248)
Q Consensus       111 ~~~~l~~~~-~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~  156 (248)
                      |...+|+.. ...+....+++++.++|+|||.+++...........+
T Consensus       304 ~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~~~~l  350 (381)
T 3dmg_A          304 TNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFLKYEPLL  350 (381)
T ss_dssp             ECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTSCHHHHH
T ss_pred             ECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCCChHHHH
Confidence            988777521 1246688999999999999999999876654333333

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.56  E-value=2.1e-14  Score=115.68  Aligned_cols=117  Identities=14%  Similarity=0.089  Sum_probs=86.7

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      ..++.+|||||||+|..+..++.. +..+++|+|+|+.+++.|+++....+. .++.++++|+.+  +...+  .+++||
T Consensus        36 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~-~nv~~~~~d~~~--l~~~~--~~~~~d  110 (213)
T 2fca_A           36 GNDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA-QNVKLLNIDADT--LTDVF--EPGEVK  110 (213)
T ss_dssp             TSCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC-SSEEEECCCGGG--HHHHC--CTTSCC
T ss_pred             CCCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCC-CCEEEEeCCHHH--HHhhc--CcCCcC
Confidence            346789999999999999998876 345999999999999999998776542 248999999865  21111  357899


Q ss_pred             EEEeccchhhhcC----CHHHHHHHHHHHhccccCCcEEEEEecChh
Q 025775          108 LVCCFQHLQMCFE----TEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (248)
Q Consensus       108 ~V~~~~~l~~~~~----~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~  150 (248)
                      .|++.+...+.-.    ..-....+++++.++|+|||.+++.+.+..
T Consensus       111 ~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~  157 (213)
T 2fca_A          111 RVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRG  157 (213)
T ss_dssp             EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHH
T ss_pred             EEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHH
Confidence            9987654332100    000136789999999999999999887653

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.56  E-value=1.5e-14  Score=111.63  Aligned_cols=111  Identities=9%  Similarity=0.061  Sum_probs=82.5

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      .+++.+|||+|||+|..+..++..+. .++|+|+|+.+++.|+++....+.  ++.++++|+.+.  ........++||+
T Consensus        39 ~~~~~~vLD~GcG~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~--~~~~~~~~~~~D~  113 (171)
T 1ws6_A           39 YPRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEVF--LPEAKAQGERFTV  113 (171)
T ss_dssp             CTTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHHH--HHHHHHTTCCEEE
T ss_pred             ccCCCeEEEeCCCcCHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHcCC--ceEEEeccHHHH--HHhhhccCCceEE
Confidence            34788999999999999998888766 599999999999999998876543  588999987441  1111112348999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHh--ccccCCcEEEEEecChh
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVS--SLLKPGGYFLGITPDSS  150 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~--~~LkpgG~~i~~~~~~~  150 (248)
                      |++...++.  .    ...+++.+.  ++|+|||.+++.++...
T Consensus       114 i~~~~~~~~--~----~~~~~~~~~~~~~L~~gG~~~~~~~~~~  151 (171)
T 1ws6_A          114 AFMAPPYAM--D----LAALFGELLASGLVEAGGLYVLQHPKDL  151 (171)
T ss_dssp             EEECCCTTS--C----TTHHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred             EEECCCCch--h----HHHHHHHHHhhcccCCCcEEEEEeCCcc
Confidence            999865541  2    223444444  99999999999877654

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.55  E-value=3.5e-14  Score=123.35  Aligned_cols=107  Identities=14%  Similarity=0.036  Sum_probs=90.5

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCc--hhhhhcccCCce
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN--FETQMQEKANQA  106 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~f  106 (248)
                      .+..+|||||||+|..+..++.. +..+++++|+ +.+++.|+++....+...++.++.+|+.+.+  +       +++|
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-------p~~~  249 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPF-------PTGF  249 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCC-------CCCC
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCC-------CCCc
Confidence            36689999999999999988775 3448999999 9999999998876554456999999997753  3       3689


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      |+|++..++|+  .+.++...++++++++|+|||.+++..
T Consensus       250 D~v~~~~vlh~--~~~~~~~~~l~~~~~~L~pgG~l~i~e  287 (363)
T 3dp7_A          250 DAVWMSQFLDC--FSEEEVISILTRVAQSIGKDSKVYIME  287 (363)
T ss_dssp             SEEEEESCSTT--SCHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             CEEEEechhhh--CCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            99999999997  567788899999999999999998863

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.55  E-value=3e-14  Score=119.40  Aligned_cols=111  Identities=14%  Similarity=0.032  Sum_probs=89.1

Q ss_pred             HHHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhccc
Q 025775           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (248)
Q Consensus        23 ~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  102 (248)
                      ..+...+.++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|++....++...++.++++|+.+...       
T Consensus       117 ~~l~~~~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-------  189 (278)
T 2frn_A          117 VRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-------  189 (278)
T ss_dssp             HHHHHHCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-------
T ss_pred             HHHHHhCCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-------
Confidence            3344557789999999999999999998876657999999999999999988766654458999999976443       


Q ss_pred             CCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       103 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      .++||+|++....        ....++.++.++|+|||.+++....
T Consensus       190 ~~~fD~Vi~~~p~--------~~~~~l~~~~~~LkpgG~l~~~~~~  227 (278)
T 2frn_A          190 ENIADRILMGYVV--------RTHEFIPKALSIAKDGAIIHYHNTV  227 (278)
T ss_dssp             CSCEEEEEECCCS--------SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             cCCccEEEECCch--------hHHHHHHHHHHHCCCCeEEEEEEee
Confidence            5789999885431        1356788899999999999987544

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.55  E-value=4.2e-14  Score=115.63  Aligned_cols=119  Identities=13%  Similarity=0.105  Sum_probs=82.9

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhc-----CCCceEEEEEcCCCCCchhhhhccc
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQ-----RKNFIAEFFEADPCAENFETQMQEK  102 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~-----~~~~~~~~~~~d~~~~~~~~~~~~~  102 (248)
                      ..++.+|||||||+|.++..++... ...++|+|+|+.|++.|+++....     ....++.++++|+... +...+  .
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~-l~~~~--~  120 (235)
T 3ckk_A           44 AQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKH-LPNFF--Y  120 (235)
T ss_dssp             --CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTC-HHHHC--C
T ss_pred             cCCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHh-hhhhC--C
Confidence            4467789999999999999988763 458999999999999998776431     1123589999998651 11111  3


Q ss_pred             CCceeEEEeccchhhhcC-CHHH---HHHHHHHHhccccCCcEEEEEecChh
Q 025775          103 ANQADLVCCFQHLQMCFE-TEER---ARRLLQNVSSLLKPGGYFLGITPDSS  150 (248)
Q Consensus       103 ~~~fD~V~~~~~l~~~~~-~~~~---~~~~l~~~~~~LkpgG~~i~~~~~~~  150 (248)
                      +++||.|++.+.-.+.-. +...   ...+++++.++|+|||.|++.+.+..
T Consensus       121 ~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~  172 (235)
T 3ckk_A          121 KGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLE  172 (235)
T ss_dssp             TTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCHH
T ss_pred             CcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHH
Confidence            678999987654332100 0000   14799999999999999999887754

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.54  E-value=4.5e-14  Score=117.28  Aligned_cols=102  Identities=21%  Similarity=0.333  Sum_probs=83.5

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      .++.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++..      ++.+.++|+...++      .+++||+
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~------~~~~~~~d~~~~~~------~~~~fD~  151 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP------QVTFCVASSHRLPF------SDTSMDA  151 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT------TSEEEECCTTSCSB------CTTCEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCC------CcEEEEcchhhCCC------CCCceeE
Confidence            57889999999999999998876 24599999999999999987752      26789999876554      4678999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHH
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA  154 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~  154 (248)
                      |++.++.+           +++++.++|+|||.+++..++...+..
T Consensus       152 v~~~~~~~-----------~l~~~~~~L~pgG~l~~~~~~~~~~~~  186 (269)
T 1p91_A          152 IIRIYAPC-----------KAEELARVVKPGGWVITATPGPRHLME  186 (269)
T ss_dssp             EEEESCCC-----------CHHHHHHHEEEEEEEEEEEECTTTTHH
T ss_pred             EEEeCChh-----------hHHHHHHhcCCCcEEEEEEcCHHHHHH
Confidence            99876422           478899999999999999988765443

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.54  E-value=2.4e-14  Score=114.32  Aligned_cols=108  Identities=8%  Similarity=0.000  Sum_probs=81.9

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      ++.+|||+|||+|..+..++..+..+|+|+|+|+.|++.|+++....+. .++.++++|+.+.     ++...++||+|+
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~~~~-----~~~~~~~fD~V~  127 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSF-----LAQKGTPHNIVF  127 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHH-----HSSCCCCEEEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHH-----HhhcCCCCCEEE
Confidence            6789999999999998887777666999999999999999998876543 3589999987431     111356899999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHhc--cccCCcEEEEEecCh
Q 025775          111 CFQHLQMCFETEERARRLLQNVSS--LLKPGGYFLGITPDS  149 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~~~~--~LkpgG~~i~~~~~~  149 (248)
                      +...++.     .....+++.+.+  +|+|||++++.+...
T Consensus       128 ~~~p~~~-----~~~~~~l~~l~~~~~L~pgG~l~i~~~~~  163 (202)
T 2fpo_A          128 VDPPFRR-----GLLEETINLLEDNGWLADEALIYVESEVE  163 (202)
T ss_dssp             ECCSSST-----TTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred             ECCCCCC-----CcHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence            8765442     224456666654  699999999886654

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.54  E-value=1.6e-13  Score=106.79  Aligned_cols=107  Identities=8%  Similarity=-0.018  Sum_probs=85.7

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      ..++.+|||+|||+|..+..++. +..+++|+|+|+.+++.|+++....+. .++.++++|+.+ .+      ++++||+
T Consensus        33 ~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~~d~~~-~~------~~~~~D~  103 (183)
T 2yxd_A           33 LNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNI-KNCQIIKGRAED-VL------DKLEFNK  103 (183)
T ss_dssp             CCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTC-CSEEEEESCHHH-HG------GGCCCSE
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEECCccc-cc------cCCCCcE
Confidence            34788999999999999988877 556999999999999999998876543 348899999754 22      2468999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHH
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA  154 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~  154 (248)
                      |++...        .....+++++.++  |||.+++..++...+..
T Consensus       104 i~~~~~--------~~~~~~l~~~~~~--~gG~l~~~~~~~~~~~~  139 (183)
T 2yxd_A          104 AFIGGT--------KNIEKIIEILDKK--KINHIVANTIVLENAAK  139 (183)
T ss_dssp             EEECSC--------SCHHHHHHHHHHT--TCCEEEEEESCHHHHHH
T ss_pred             EEECCc--------ccHHHHHHHHhhC--CCCEEEEEecccccHHH
Confidence            999875        2356788888888  99999999888765443

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.54  E-value=5e-14  Score=114.34  Aligned_cols=101  Identities=12%  Similarity=0.052  Sum_probs=82.8

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      ..++.+|||+|||+|..+..++... .+++|+|+|+.+++.|+++....+   ++.++++|+.....      ..++||+
T Consensus        68 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d~~~~~~------~~~~fD~  137 (231)
T 1vbf_A           68 LHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYN---NIKLILGDGTLGYE------EEKPYDR  137 (231)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGGGCCG------GGCCEEE
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcC---CeEEEECCcccccc------cCCCccE
Confidence            4578899999999999998888776 599999999999999999876543   48899999855221      2568999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      |++..+++++.          .++.++|+|||.+++.+++.
T Consensus       138 v~~~~~~~~~~----------~~~~~~L~pgG~l~~~~~~~  168 (231)
T 1vbf_A          138 VVVWATAPTLL----------CKPYEQLKEGGIMILPIGVG  168 (231)
T ss_dssp             EEESSBBSSCC----------HHHHHTEEEEEEEEEEECSS
T ss_pred             EEECCcHHHHH----------HHHHHHcCCCcEEEEEEcCC
Confidence            99999888732          35888999999999997754

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.53  E-value=4.3e-14  Score=116.89  Aligned_cols=105  Identities=21%  Similarity=0.144  Sum_probs=84.7

Q ss_pred             HHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCc
Q 025775           26 KIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (248)
Q Consensus        26 ~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (248)
                      .....++.+|||+|||+|..+..++..+. +++|+|+|+.+++.|+++....+..  +.+.++|+.+. +      +.++
T Consensus       115 ~~~~~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~~-~------~~~~  184 (254)
T 2nxc_A          115 ARHLRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAA-L------PFGP  184 (254)
T ss_dssp             HHHCCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHH-G------GGCC
T ss_pred             HHhcCCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhhc-C------cCCC
Confidence            34467889999999999999888877776 9999999999999999988766533  78888886331 1      2568


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      ||+|++....+.       ...++.++.++|+|||.++++..
T Consensus       185 fD~Vv~n~~~~~-------~~~~l~~~~~~LkpgG~lils~~  219 (254)
T 2nxc_A          185 FDLLVANLYAEL-------HAALAPRYREALVPGGRALLTGI  219 (254)
T ss_dssp             EEEEEEECCHHH-------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCEEEECCcHHH-------HHHHHHHHHHHcCCCCEEEEEee
Confidence            999998764443       67899999999999999998743

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.53  E-value=7e-14  Score=119.83  Aligned_cols=106  Identities=16%  Similarity=0.034  Sum_probs=89.2

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      +..+|||+|||+|..+..++.. +..+++++|+ +.+++.|+++....+...++.+..+|+.. ++       +.+||+|
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~-------p~~~D~v  239 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFD-PL-------PAGAGGY  239 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CC-------CCSCSEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCC-CC-------CCCCcEE
Confidence            4679999999999999888775 3458999999 99999999988765544569999999863 33       2389999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      ++..++|+  .+.+....++++++++|+|||.+++..+
T Consensus       240 ~~~~vlh~--~~~~~~~~~l~~~~~~L~pgG~l~i~e~  275 (332)
T 3i53_A          240 VLSAVLHD--WDDLSAVAILRRCAEAAGSGGVVLVIEA  275 (332)
T ss_dssp             EEESCGGG--SCHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred             EEehhhcc--CCHHHHHHHHHHHHHhcCCCCEEEEEee
Confidence            99999998  5677789999999999999999998743

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.53  E-value=1.7e-13  Score=110.70  Aligned_cols=108  Identities=12%  Similarity=0.059  Sum_probs=82.5

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc--cCCce
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQA  106 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~f  106 (248)
                      ++.+|||||||+|..+..++..  ...+|+++|+++.+++.|++++...+...++.++++|+.+.  .+.+..  ..++|
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--l~~~~~~~~~~~f  135 (221)
T 3u81_A           58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDL--IPQLKKKYDVDTL  135 (221)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH--GGGTTTTSCCCCC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHH--HHHHHHhcCCCce
Confidence            6789999999999999888774  24599999999999999999887766545699999997431  111100  12689


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      |+|++....++    ......+++.+ ++|+|||++++.
T Consensus       136 D~V~~d~~~~~----~~~~~~~~~~~-~~LkpgG~lv~~  169 (221)
T 3u81_A          136 DMVFLDHWKDR----YLPDTLLLEKC-GLLRKGTVLLAD  169 (221)
T ss_dssp             SEEEECSCGGG----HHHHHHHHHHT-TCCCTTCEEEES
T ss_pred             EEEEEcCCccc----chHHHHHHHhc-cccCCCeEEEEe
Confidence            99998876654    23345677777 999999999987

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.53  E-value=9e-15  Score=118.67  Aligned_cols=111  Identities=14%  Similarity=0.197  Sum_probs=84.7

Q ss_pred             HHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC-Cchhhhhccc
Q 025775           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-ENFETQMQEK  102 (248)
Q Consensus        24 li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~  102 (248)
                      ++....+++.+|||+|||+|..+..++..+. +|+|+|+|+.+++.|+++..      ++.++++|+.+ .++      .
T Consensus        41 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~------~~~~~~~d~~~~~~~------~  107 (226)
T 3m33_A           41 WLSRLLTPQTRVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLARANAP------HADVYEWNGKGELPA------G  107 (226)
T ss_dssp             HHHHHCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHCT------TSEEEECCSCSSCCT------T
T ss_pred             HHHhcCCCCCeEEEeCCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhCC------CceEEEcchhhccCC------c
Confidence            3444567889999999999999999888754 99999999999999988722      38899999843 333      3


Q ss_pred             -CCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE--ecChhHHHHHHH
Q 025775          103 -ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI--TPDSSTIWAKYQ  157 (248)
Q Consensus       103 -~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~--~~~~~~~~~~~~  157 (248)
                       +++||+|++..          +...+++++.++|||||.++..  ..+...+.+.+.
T Consensus       108 ~~~~fD~v~~~~----------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~  155 (226)
T 3m33_A          108 LGAPFGLIVSRR----------GPTSVILRLPELAAPDAHFLYVGPRLNVPEVPERLA  155 (226)
T ss_dssp             CCCCEEEEEEES----------CCSGGGGGHHHHEEEEEEEEEEESSSCCTHHHHHHH
T ss_pred             CCCCEEEEEeCC----------CHHHHHHHHHHHcCCCcEEEEeCCcCCHHHHHHHHH
Confidence             67899998863          2456788999999999999833  223345555544

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.53  E-value=2.5e-13  Score=118.15  Aligned_cols=105  Identities=19%  Similarity=0.141  Sum_probs=89.1

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      .++.+|||+|||+|..+..++.. +..+++++|+ +.+++.|+++....+...++.+..+|+. .++       +..||+
T Consensus       201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~-------p~~~D~  271 (369)
T 3gwz_A          201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-ETI-------PDGADV  271 (369)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCC-------CSSCSE
T ss_pred             ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCC-------CCCceE
Confidence            46789999999999999988876 3348999999 9999999998876554456999999987 233       237999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      |++..++|+  .+.+....+++++.+.|+|||.+++.
T Consensus       272 v~~~~vlh~--~~d~~~~~~L~~~~~~L~pgG~l~i~  306 (369)
T 3gwz_A          272 YLIKHVLHD--WDDDDVVRILRRIATAMKPDSRLLVI  306 (369)
T ss_dssp             EEEESCGGG--SCHHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             EEhhhhhcc--CCHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            999999998  56777889999999999999999987

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.53  E-value=5.1e-14  Score=114.77  Aligned_cols=104  Identities=10%  Similarity=0.074  Sum_probs=83.1

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      ++.+|||||||+|..+..++.. +..+|+|+|+++.+++.|++++...+...++.++++|+.+... ..   .+++||+|
T Consensus        71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~---~~~~fD~V  146 (232)
T 3ntv_A           71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFE-NV---NDKVYDMI  146 (232)
T ss_dssp             TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHH-HH---TTSCEEEE
T ss_pred             CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHH-hh---ccCCccEE
Confidence            6789999999999999888774 3469999999999999999998776544469999999854311 01   25789999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      ++.....       ....+++.+.++|+|||++++.
T Consensus       147 ~~~~~~~-------~~~~~l~~~~~~LkpgG~lv~d  175 (232)
T 3ntv_A          147 FIDAAKA-------QSKKFFEIYTPLLKHQGLVITD  175 (232)
T ss_dssp             EEETTSS-------SHHHHHHHHGGGEEEEEEEEEE
T ss_pred             EEcCcHH-------HHHHHHHHHHHhcCCCeEEEEe
Confidence            8765322       2567899999999999999985

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.53  E-value=6.7e-14  Score=121.80  Aligned_cols=109  Identities=15%  Similarity=0.047  Sum_probs=83.5

Q ss_pred             hcCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHH-------hcCC-CceEEEEEcCCCCCchhhh
Q 025775           28 YSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWE-------NQRK-NFIAEFFEADPCAENFETQ   98 (248)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~-------~~~~-~~~~~~~~~d~~~~~~~~~   98 (248)
                      -+.++.+|||||||+|..+..++.. +..+++|+|+|+.+++.|++...       ..+. ..++.|+++|+.+.++...
T Consensus       170 ~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d~  249 (438)
T 3uwp_A          170 KMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRER  249 (438)
T ss_dssp             CCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHHH
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCccccc
Confidence            3568999999999999999888754 55569999999999999887432       2222 2469999999988665311


Q ss_pred             hcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775           99 MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus        99 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                          -..+|+|++...++     .++....+.++.+.|||||.|+++
T Consensus       250 ----~~~aDVVf~Nn~~F-----~pdl~~aL~Ei~RvLKPGGrIVss  287 (438)
T 3uwp_A          250 ----IANTSVIFVNNFAF-----GPEVDHQLKERFANMKEGGRIVSS  287 (438)
T ss_dssp             ----HHTCSEEEECCTTC-----CHHHHHHHHHHHTTSCTTCEEEES
T ss_pred             ----cCCccEEEEccccc-----CchHHHHHHHHHHcCCCCcEEEEe
Confidence                13699999865432     245677788999999999999986

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.52  E-value=3.7e-14  Score=123.13  Aligned_cols=104  Identities=16%  Similarity=0.075  Sum_probs=85.8

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      ++.+|||||||+|.++...++.+.++|+|+|.|+ |++.|++....++...++.++++|+.+..+       +.++|+|+
T Consensus        83 ~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~l-------pe~~Dviv  154 (376)
T 4hc4_A           83 RGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVEL-------PEQVDAIV  154 (376)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCC-------SSCEEEEE
T ss_pred             CCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecC-------CccccEEE
Confidence            7899999999999877777777888999999986 889999888877777789999999987665       57899999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHhccccCCcEEE
Q 025775          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i  143 (248)
                      +-..-. .+..+..+..++....+.|+|||.++
T Consensus       155 sE~~~~-~l~~e~~l~~~l~a~~r~Lkp~G~~i  186 (376)
T 4hc4_A          155 SEWMGY-GLLHESMLSSVLHARTKWLKEGGLLL  186 (376)
T ss_dssp             CCCCBT-TBTTTCSHHHHHHHHHHHEEEEEEEE
T ss_pred             eecccc-cccccchhhhHHHHHHhhCCCCceEC
Confidence            854322 33445568888999999999999886

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.52  E-value=2.8e-13  Score=107.99  Aligned_cols=101  Identities=12%  Similarity=0.005  Sum_probs=81.9

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      ++.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++....+.. ++.+.++|+.+..       +.++||+|
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~-------~~~~~D~i  136 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE-NIEPVQSRVEEFP-------SEPPFDGV  136 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEECCTTTSC-------CCSCEEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEecchhhCC-------ccCCcCEE
Confidence            4789999999999999888875 4459999999999999999887765432 2889999986643       24689999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      ++... +       ....+++++.++|+|||.+++...
T Consensus       137 ~~~~~-~-------~~~~~l~~~~~~L~~gG~l~~~~~  166 (207)
T 1jsx_A          137 ISRAF-A-------SLNDMVSWCHHLPGEQGRFYALKG  166 (207)
T ss_dssp             ECSCS-S-------SHHHHHHHHTTSEEEEEEEEEEES
T ss_pred             EEecc-C-------CHHHHHHHHHHhcCCCcEEEEEeC
Confidence            87542 1       256899999999999999998843

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.52  E-value=1.1e-13  Score=113.29  Aligned_cols=105  Identities=17%  Similarity=0.152  Sum_probs=81.3

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      .++.+|||+|||+|..+..++.. +..+|+|+|+|+.|++.|++.....+.. ++.++++|+.+..+.   ....++||+
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~---~~~~~~fD~  144 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQR---KDVRESYDI  144 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTC---TTTTTCEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEeccHHHhccc---ccccCCccE
Confidence            36789999999999998888753 4458999999999999999887765432 489999987442210   001468999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      |+|...        .+...+++.+.++|+|||.+++..
T Consensus       145 V~~~~~--------~~~~~~l~~~~~~LkpgG~l~~~~  174 (240)
T 1xdz_A          145 VTARAV--------ARLSVLSELCLPLVKKNGLFVALK  174 (240)
T ss_dssp             EEEECC--------SCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             EEEecc--------CCHHHHHHHHHHhcCCCCEEEEEe
Confidence            998662        226789999999999999998873

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.51  E-value=5e-14  Score=116.89  Aligned_cols=130  Identities=17%  Similarity=0.055  Sum_probs=92.6

Q ss_pred             HHHHHHHHhcC--CCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHh---cCCCceEEEEEcCCCCC
Q 025775           20 AKTALIKIYSH--PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWEN---QRKNFIAEFFEADPCAE   93 (248)
Q Consensus        20 ~~~~li~~~~~--~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~---~~~~~~~~~~~~d~~~~   93 (248)
                      +-..++..++.  ++.+|||+|||+|..+..++... ..+++|+|+++.+++.|++....   .+...++.++++|+.+.
T Consensus        23 ~D~~lL~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~  102 (260)
T 2ozv_A           23 MDAMLLASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLR  102 (260)
T ss_dssp             CHHHHHHHTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCC
T ss_pred             cHHHHHHHHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHH
Confidence            44556666654  67899999999999988887764 35899999999999999998766   54444589999999765


Q ss_pred             chhhh-hcccCCceeEEEeccchhhh--------------cCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775           94 NFETQ-MQEKANQADLVCCFQHLQMC--------------FETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus        94 ~~~~~-~~~~~~~fD~V~~~~~l~~~--------------~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      ..... ..-.+++||+|++....+..              .........+++.+.++|+|||.+++..+..
T Consensus       103 ~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  173 (260)
T 2ozv_A          103 AKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQ  173 (260)
T ss_dssp             HHHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGG
T ss_pred             hhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHH
Confidence            21000 00035789999997322210              0111236788999999999999999987654

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.51  E-value=2e-13  Score=110.60  Aligned_cols=124  Identities=9%  Similarity=-0.098  Sum_probs=96.1

Q ss_pred             HHHHHhcCCCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc
Q 025775           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE  101 (248)
Q Consensus        23 ~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  101 (248)
                      ..+..+++++.+|||||||+|..+..++..+ ..+|+|+|+++.+++.|++.....+...++.+.++|..+...      
T Consensus        13 ~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~------   86 (230)
T 3lec_A           13 QKVANYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFE------   86 (230)
T ss_dssp             HHHHTTSCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC------
T ss_pred             HHHHHhCCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccc------
Confidence            3466788899999999999999998888875 458999999999999999998887766679999999855322      


Q ss_pred             cCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC-hhHHHHHHHH
Q 025775          102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD-SSTIWAKYQK  158 (248)
Q Consensus       102 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~-~~~~~~~~~~  158 (248)
                      +..+||+|++...      ..+-+..++......|+++|.|+++-.. .+.+++.+.+
T Consensus        87 ~~~~~D~IviaGm------Gg~lI~~IL~~~~~~l~~~~~lIlqp~~~~~~lr~~L~~  138 (230)
T 3lec_A           87 EADNIDTITICGM------GGRLIADILNNDIDKLQHVKTLVLQPNNREDDLRKWLAA  138 (230)
T ss_dssp             GGGCCCEEEEEEE------CHHHHHHHHHHTGGGGTTCCEEEEEESSCHHHHHHHHHH
T ss_pred             cccccCEEEEeCC------chHHHHHHHHHHHHHhCcCCEEEEECCCChHHHHHHHHH
Confidence            1237999875442      2345788999999999999999988443 3555555543

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.50  E-value=1.2e-13  Score=123.94  Aligned_cols=106  Identities=16%  Similarity=0.081  Sum_probs=85.0

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      .++.+|||||||+|..+..++..+..+|+|+|+|+ +++.|+++....+...++.++++|+.+.++       +++||+|
T Consensus       157 ~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~-------~~~fD~I  228 (480)
T 3b3j_A          157 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSL-------PEQVDII  228 (480)
T ss_dssp             TTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC-------SSCEEEE
T ss_pred             cCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCcc-------CCCeEEE
Confidence            36789999999999998888777667999999998 999999888776554569999999976443       4689999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      ++...+++. . .+.....+..+.++|+|||.+++.
T Consensus       229 vs~~~~~~~-~-~e~~~~~l~~~~~~LkpgG~li~~  262 (480)
T 3b3j_A          229 ISEPMGYML-F-NERMLESYLHAKKYLKPSGNMFPT  262 (480)
T ss_dssp             ECCCCHHHH-T-CHHHHHHHHHGGGGEEEEEEEESC
T ss_pred             EEeCchHhc-C-cHHHHHHHHHHHHhcCCCCEEEEE
Confidence            997765542 2 234556777899999999999854

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.50  E-value=2.3e-13  Score=111.20  Aligned_cols=124  Identities=9%  Similarity=-0.063  Sum_probs=96.5

Q ss_pred             HHHHHhcCCCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc
Q 025775           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE  101 (248)
Q Consensus        23 ~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  101 (248)
                      ..+..+++++.+|||||||+|..+..++..+ ..+++|+|+++.+++.|++.....+...++.+.++|..+...      
T Consensus        13 ~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~------   86 (244)
T 3gnl_A           13 EKVASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIE------   86 (244)
T ss_dssp             HHHHTTCCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC------
T ss_pred             HHHHHhCCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccC------
Confidence            3567788899999999999999998888875 458999999999999999998877765669999999754321      


Q ss_pred             cCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec-ChhHHHHHHHH
Q 025775          102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP-DSSTIWAKYQK  158 (248)
Q Consensus       102 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~-~~~~~~~~~~~  158 (248)
                      +..+||+|++...      ..+-+..++......|+++|.|+++-. ..+.+.+.+.+
T Consensus        87 ~~~~~D~Iviagm------Gg~lI~~IL~~~~~~L~~~~~lIlq~~~~~~~lr~~L~~  138 (244)
T 3gnl_A           87 KKDAIDTIVIAGM------GGTLIRTILEEGAAKLAGVTKLILQPNIAAWQLREWSEQ  138 (244)
T ss_dssp             GGGCCCEEEEEEE------CHHHHHHHHHHTGGGGTTCCEEEEEESSCHHHHHHHHHH
T ss_pred             ccccccEEEEeCC------chHHHHHHHHHHHHHhCCCCEEEEEcCCChHHHHHHHHH
Confidence            1235999876442      344578899999999999999999844 34555555554

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.50  E-value=1.9e-13  Score=110.40  Aligned_cols=107  Identities=13%  Similarity=0.073  Sum_probs=83.6

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcC--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhccc-CCcee
Q 025775           31 PYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK-ANQAD  107 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~--~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~fD  107 (248)
                      ++.+|||||||+|..+..++...  ..+++|+|+++.+++.|++++...+...++.++++|+.+.  ...+... .++||
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~fD  135 (223)
T 3duw_A           58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDS--LQQIENEKYEPFD  135 (223)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH--HHHHHHTTCCCCS
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH--HHHHHhcCCCCcC
Confidence            67899999999999999888762  4599999999999999999887666545699999997431  1111111 26799


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      +|++.....       ....+++.+.++|+|||++++..
T Consensus       136 ~v~~d~~~~-------~~~~~l~~~~~~L~pgG~lv~~~  167 (223)
T 3duw_A          136 FIFIDADKQ-------NNPAYFEWALKLSRPGTVIIGDN  167 (223)
T ss_dssp             EEEECSCGG-------GHHHHHHHHHHTCCTTCEEEEES
T ss_pred             EEEEcCCcH-------HHHHHHHHHHHhcCCCcEEEEeC
Confidence            998876533       25678999999999999999873

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.50  E-value=7e-14  Score=120.51  Aligned_cols=118  Identities=19%  Similarity=0.220  Sum_probs=92.0

Q ss_pred             HHHHHh-cCCCCeEEEEcCCCCccHhHHHHcCC-CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhc
Q 025775           23 ALIKIY-SHPYVTVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ  100 (248)
Q Consensus        23 ~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~-~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  100 (248)
                      .+++.+ ..++.+|||+|||+|..+..++.... .+++|+|+|+.|++.|+++....+.  ...++++|+...       
T Consensus       187 ~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~--~~~~~~~d~~~~-------  257 (343)
T 2pjd_A          187 LLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGV--EGEVFASNVFSE-------  257 (343)
T ss_dssp             HHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTC--CCEEEECSTTTT-------
T ss_pred             HHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC--CCEEEEcccccc-------
Confidence            344444 33677999999999999998887753 4899999999999999998876543  356788887542       


Q ss_pred             ccCCceeEEEeccchhhhc-CCHHHHHHHHHHHhccccCCcEEEEEecChh
Q 025775          101 EKANQADLVCCFQHLQMCF-ETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (248)
Q Consensus       101 ~~~~~fD~V~~~~~l~~~~-~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~  150 (248)
                       .+++||+|+|...+|+.. .+.+....+++++.++|+|||.+++..+...
T Consensus       258 -~~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  307 (343)
T 2pjd_A          258 -VKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAFL  307 (343)
T ss_dssp             -CCSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETTS
T ss_pred             -ccCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCCC
Confidence             256899999998877421 1345678999999999999999999876653

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.50  E-value=1.7e-13  Score=109.93  Aligned_cols=104  Identities=13%  Similarity=-0.009  Sum_probs=82.3

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcC-C-CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETAL-I-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~-~-~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      ..++.+|||+|||+|..+..++... . .+++|+|+|+.+++.|+++....+. .++.+.++|+.....      ..++|
T Consensus        75 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~------~~~~f  147 (215)
T 2yxe_A           75 LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGY-DNVIVIVGDGTLGYE------PLAPY  147 (215)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTC-TTEEEEESCGGGCCG------GGCCE
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccCCC------CCCCe
Confidence            4578899999999999998887763 2 5999999999999999998765432 138899998743211      24689


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      |+|++..+++++.          +++.++|+|||.+++.+++.
T Consensus       148 D~v~~~~~~~~~~----------~~~~~~L~pgG~lv~~~~~~  180 (215)
T 2yxe_A          148 DRIYTTAAGPKIP----------EPLIRQLKDGGKLLMPVGRY  180 (215)
T ss_dssp             EEEEESSBBSSCC----------HHHHHTEEEEEEEEEEESSS
T ss_pred             eEEEECCchHHHH----------HHHHHHcCCCcEEEEEECCC
Confidence            9999999888732          47889999999999987764

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.50  E-value=1.6e-13  Score=119.65  Aligned_cols=120  Identities=17%  Similarity=0.158  Sum_probs=90.2

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCC--ceEEEEEcCCCCCchhhhhcccCCcee
Q 025775           31 PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKN--FIAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      ++.+|||+|||+|..+..++... ..+|+|+|+|+.+++.|+++....+..  .++.+.++|+.+. +      .+++||
T Consensus       222 ~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~-~------~~~~fD  294 (375)
T 4dcm_A          222 LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-V------EPFRFN  294 (375)
T ss_dssp             CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTT-C------CTTCEE
T ss_pred             CCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhcc-C------CCCCee
Confidence            56899999999999999998874 469999999999999999988765422  2488899998662 2      357899


Q ss_pred             EEEeccchhhhcC-CHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHH
Q 025775          108 LVCCFQHLQMCFE-TEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ  157 (248)
Q Consensus       108 ~V~~~~~l~~~~~-~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~  157 (248)
                      +|+|...+|.... .......+++++.++|+|||.+++...........+.
T Consensus       295 ~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~~~~~~l~  345 (375)
T 4dcm_A          295 AVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLK  345 (375)
T ss_dssp             EEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHH
T ss_pred             EEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCcCHHHHHH
Confidence            9999887774211 1223457899999999999999998766544444443

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.49  E-value=2.6e-13  Score=111.73  Aligned_cols=106  Identities=9%  Similarity=0.037  Sum_probs=83.1

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc-C-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~-~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      ++.+|||||||+|..+..++.. + ..+|+|+|+|+.+++.|++++...+...++.++++|+.+  ..... ...++||+
T Consensus        63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~--~l~~~-~~~~~fD~  139 (248)
T 3tfw_A           63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQ--SLESL-GECPAFDL  139 (248)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHH--HHHTC-CSCCCCSE
T ss_pred             CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH--HHHhc-CCCCCeEE
Confidence            6789999999999999888876 2 469999999999999999998776654569999999743  11111 01348999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      |++.....       ....+++++.++|+|||++++..
T Consensus       140 V~~d~~~~-------~~~~~l~~~~~~LkpGG~lv~~~  170 (248)
T 3tfw_A          140 IFIDADKP-------NNPHYLRWALRYSRPGTLIIGDN  170 (248)
T ss_dssp             EEECSCGG-------GHHHHHHHHHHTCCTTCEEEEEC
T ss_pred             EEECCchH-------HHHHHHHHHHHhcCCCeEEEEeC
Confidence            98865332       35678999999999999999873

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.49  E-value=3e-13  Score=109.35  Aligned_cols=122  Identities=12%  Similarity=-0.000  Sum_probs=94.6

Q ss_pred             HHHHhcCCCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhccc
Q 025775           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (248)
Q Consensus        24 li~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  102 (248)
                      .+..+++++.+|||||||+|..+..++..+ ..+|+|+|+++.+++.|++.....+...++.+.++|..+. +      +
T Consensus         8 ~l~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~-l------~   80 (225)
T 3kr9_A            8 LVASFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAA-F------E   80 (225)
T ss_dssp             HHHTTSCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGG-C------C
T ss_pred             HHHHhCCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhh-c------c
Confidence            456778899999999999999998888875 4589999999999999999988777655799999997431 1      1


Q ss_pred             CC-ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh-hHHHHHHHH
Q 025775          103 AN-QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS-STIWAKYQK  158 (248)
Q Consensus       103 ~~-~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~-~~~~~~~~~  158 (248)
                      .+ +||+|++...      ..+.+..++......|+++|.+++.-... +.+.+.+.+
T Consensus        81 ~~~~~D~IviaG~------Gg~~i~~Il~~~~~~L~~~~~lVlq~~~~~~~vr~~L~~  132 (225)
T 3kr9_A           81 ETDQVSVITIAGM------GGRLIARILEEGLGKLANVERLILQPNNREDDLRIWLQD  132 (225)
T ss_dssp             GGGCCCEEEEEEE------CHHHHHHHHHHTGGGCTTCCEEEEEESSCHHHHHHHHHH
T ss_pred             cCcCCCEEEEcCC------ChHHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHH
Confidence            22 6998876542      23447889999999999999999874433 555555543

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.49  E-value=2.1e-13  Score=116.88  Aligned_cols=103  Identities=18%  Similarity=0.142  Sum_probs=86.4

Q ss_pred             CeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEe
Q 025775           33 VTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (248)
Q Consensus        33 ~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~  111 (248)
                      .+|||+|||+|..+..++.. +..+++++|+ +.+++.|+++....+...++.++++|+.+ ++       +.+||+|++
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~-------~~~~D~v~~  239 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EV-------PSNGDIYLL  239 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CC-------CSSCSEEEE
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CC-------CCCCCEEEE
Confidence            89999999999999888776 3458999999 99999999887654323359999999866 33       367999999


Q ss_pred             ccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       112 ~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      ..++|+  .+.+....+++++.+.|+|||.+++..
T Consensus       240 ~~vl~~--~~~~~~~~~l~~~~~~L~pgG~l~i~e  272 (334)
T 2ip2_A          240 SRIIGD--LDEAASLRLLGNCREAMAGDGRVVVIE  272 (334)
T ss_dssp             ESCGGG--CCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             chhccC--CCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            999997  467778899999999999999999873

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.49  E-value=2.1e-13  Score=117.68  Aligned_cols=109  Identities=18%  Similarity=0.072  Sum_probs=81.8

Q ss_pred             HHHHh-cCCCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc
Q 025775           24 LIKIY-SHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE  101 (248)
Q Consensus        24 li~~~-~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  101 (248)
                      ++..+ .+++.+|||||||+|..+..++... ..+++++|+ +.++.  +++....+...++.++++|+. .++      
T Consensus       176 ~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~-~~~------  245 (348)
T 3lst_A          176 LARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFL-REV------  245 (348)
T ss_dssp             HHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTT-TCC------
T ss_pred             HHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCC-CCC------
Confidence            44443 3467899999999999999887763 348999999 44544  222222222345999999986 222      


Q ss_pred             cCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775          102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       102 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                       + +||+|++..++|+  .+.++...++++++++|||||.+++..
T Consensus       246 -p-~~D~v~~~~vlh~--~~d~~~~~~L~~~~~~LkpgG~l~i~e  286 (348)
T 3lst_A          246 -P-HADVHVLKRILHN--WGDEDSVRILTNCRRVMPAHGRVLVID  286 (348)
T ss_dssp             -C-CCSEEEEESCGGG--SCHHHHHHHHHHHHHTCCTTCEEEEEE
T ss_pred             -C-CCcEEEEehhccC--CCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence             3 8999999999998  567777899999999999999999873

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.49  E-value=1.7e-13  Score=111.49  Aligned_cols=108  Identities=12%  Similarity=0.044  Sum_probs=82.2

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      +.++.+|||+|||+|.++..++..  +..+++|+|+|+.|++.+.+.....   .++.++++|+.+....   +..+++|
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~d~~~~~~~---~~~~~~~  148 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR---TNIIPVIEDARHPHKY---RMLIAMV  148 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC---TTEEEECSCTTCGGGG---GGGCCCE
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc---CCeEEEEcccCChhhh---cccCCcE
Confidence            457889999999999999988876  3469999999999888777666543   2388999999764311   1135789


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      |+|++...      ..+....++.++.++|+|||.+++.+..
T Consensus       149 D~V~~~~~------~~~~~~~~~~~~~~~LkpgG~l~i~~~~  184 (233)
T 2ipx_A          149 DVIFADVA------QPDQTRIVALNAHTFLRNGGHFVISIKA  184 (233)
T ss_dssp             EEEEECCC------CTTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             EEEEEcCC------CccHHHHHHHHHHHHcCCCeEEEEEEcc
Confidence            99998553      2334566788999999999999997543

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.49  E-value=1.3e-13  Score=112.06  Aligned_cols=105  Identities=16%  Similarity=0.061  Sum_probs=80.4

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      +.++.+|||+|||+|..+..++.. +..+|+|+|+|+.|++.|+++....   .++.++++|+.....  ... ..++||
T Consensus        72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~--~~~-~~~~~D  145 (230)
T 1fbn_A           72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQE--YAN-IVEKVD  145 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGG--GTT-TSCCEE
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCCccc--ccc-cCccEE
Confidence            347889999999999999888876 4469999999999999998876543   348899999876211  000 136899


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +|++.      +........+++++.+.|+|||.+++.
T Consensus       146 ~v~~~------~~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          146 VIYED------VAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             EEEEC------CCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEe------cCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence            99732      123344577899999999999999986

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.48  E-value=2.8e-15  Score=122.60  Aligned_cols=102  Identities=21%  Similarity=0.187  Sum_probs=81.9

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      ++.+|||+|||+|..+..++..+ .+|+|+|+|+.|++.|+++....+...++.++++|+.+..       .+++||+|+
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~D~v~  149 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-------SFLKADVVF  149 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-------GGCCCSEEE
T ss_pred             CCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-------ccCCCCEEE
Confidence            78999999999999999998876 5999999999999999998876554346899999984422       257899999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHhccccCCcEEEE
Q 025775          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLG  144 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~  144 (248)
                      +...+|+.    ......+.++.++|+|||.+++
T Consensus       150 ~~~~~~~~----~~~~~~~~~~~~~L~pgG~~i~  179 (241)
T 3gdh_A          150 LSPPWGGP----DYATAETFDIRTMMSPDGFEIF  179 (241)
T ss_dssp             ECCCCSSG----GGGGSSSBCTTTSCSSCHHHHH
T ss_pred             ECCCcCCc----chhhhHHHHHHhhcCCcceeHH
Confidence            98877752    2233366788999999998654

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.48  E-value=4.3e-14  Score=114.83  Aligned_cols=120  Identities=24%  Similarity=0.165  Sum_probs=80.3

Q ss_pred             HHHHHHHhcCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCC-hHHHHHH---HHHHHhcCCCceEEEEEcCCCCCch
Q 025775           21 KTALIKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVA-TSGIGEA---RDTWENQRKNFIAEFFEADPCAENF   95 (248)
Q Consensus        21 ~~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis-~~~l~~a---~~~~~~~~~~~~~~~~~~d~~~~~~   95 (248)
                      ...++.....++.+|||||||+|..+..++.. +..+|+|+|+| +.|++.|   +++....+. .++.+.++|+...+.
T Consensus        14 ~~~~~~~~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~-~~v~~~~~d~~~l~~   92 (225)
T 3p2e_A           14 KDELTEIIGQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGL-SNVVFVIAAAESLPF   92 (225)
T ss_dssp             HHHHHHHHTTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCC-SSEEEECCBTTBCCG
T ss_pred             HHHHHHHhCCCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCC-CCeEEEEcCHHHhhh
Confidence            33455556678899999999999999888754 34489999999 7777776   555444332 248899999866432


Q ss_pred             hhhhcccCCceeEEEeccchhhhcCC-HHHHHHHHHHHhccccCCcEEEEEe
Q 025775           96 ETQMQEKANQADLVCCFQHLQMCFET-EERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus        96 ~~~~~~~~~~fD~V~~~~~l~~~~~~-~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      .     ....+|.|.+.+........ ......+++++.++|||||.+++.+
T Consensus        93 ~-----~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~  139 (225)
T 3p2e_A           93 E-----LKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVT  139 (225)
T ss_dssp             G-----GTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEE
T ss_pred             h-----ccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEE
Confidence            1     12456666655432210000 0112468999999999999999843

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.48  E-value=1.9e-13  Score=110.49  Aligned_cols=106  Identities=17%  Similarity=0.081  Sum_probs=82.7

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc-C-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhccc--CCce
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK--ANQA  106 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~-~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~f  106 (248)
                      ++.+|||||||+|..+..++.. + ..+|+++|+++.+++.|++++...+...++.++++|+.+.  .+.....  .++|
T Consensus        64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~f  141 (225)
T 3tr6_A           64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDT--LAELIHAGQAWQY  141 (225)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH--HHHHHTTTCTTCE
T ss_pred             CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHH--HHHhhhccCCCCc
Confidence            6789999999999999988876 2 4699999999999999999987766555699999997431  1111100  1789


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      |+|++....       .....+++++.++|+|||++++.
T Consensus       142 D~v~~~~~~-------~~~~~~l~~~~~~L~pgG~lv~~  173 (225)
T 3tr6_A          142 DLIYIDADK-------ANTDLYYEESLKLLREGGLIAVD  173 (225)
T ss_dssp             EEEEECSCG-------GGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cEEEECCCH-------HHHHHHHHHHHHhcCCCcEEEEe
Confidence            999875532       23667899999999999999987

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.48  E-value=2.9e-13  Score=118.46  Aligned_cols=123  Identities=11%  Similarity=0.068  Sum_probs=91.7

Q ss_pred             HHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCc-eEEEEEcCCCCCchhhhhcccC
Q 025775           25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNF-IAEFFEADPCAENFETQMQEKA  103 (248)
Q Consensus        25 i~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~  103 (248)
                      +..++.++.+|||+|||+|..+..++..+..+|+|+|+|+.|++.|++....++... ++.++++|+.+  +...+....
T Consensus       206 ~~~~~~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~--~l~~~~~~~  283 (385)
T 2b78_A          206 LINGSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFD--YFKYARRHH  283 (385)
T ss_dssp             HHHTTTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHH--HHHHHHHTT
T ss_pred             HHHHhcCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHH--HHHHHHHhC
Confidence            334436788999999999999999988777799999999999999999887665433 58999999844  111111124


Q ss_pred             CceeEEEeccch-----hhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          104 NQADLVCCFQHL-----QMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       104 ~~fD~V~~~~~l-----~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      .+||+|++....     ............++..+.++|+|||++++.+...
T Consensus       284 ~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~  334 (385)
T 2b78_A          284 LTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA  334 (385)
T ss_dssp             CCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             CCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            589999984322     2223335567788999999999999999986555

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.48  E-value=1.3e-13  Score=111.62  Aligned_cols=108  Identities=12%  Similarity=0.049  Sum_probs=82.7

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcC------CCeEEEEeCChHHHHHHHHHHHhcCC----CceEEEEEcCCCCCchhhh
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETAL------IANYIGIDVATSGIGEARDTWENQRK----NFIAEFFEADPCAENFETQ   98 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~------~~~v~giDis~~~l~~a~~~~~~~~~----~~~~~~~~~d~~~~~~~~~   98 (248)
                      ..++.+|||||||+|..+..++...      ..+|+|+|+++.+++.|+++....+.    ..++.++++|+........
T Consensus        78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  157 (227)
T 2pbf_A           78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK  157 (227)
T ss_dssp             SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence            5678999999999999888887653      24999999999999999998765431    2348899999865330000


Q ss_pred             hcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775           99 MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus        99 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      .  ..++||+|++...+++          +++++.++|+|||.+++.++.
T Consensus       158 ~--~~~~fD~I~~~~~~~~----------~~~~~~~~LkpgG~lv~~~~~  195 (227)
T 2pbf_A          158 K--ELGLFDAIHVGASASE----------LPEILVDLLAENGKLIIPIEE  195 (227)
T ss_dssp             H--HHCCEEEEEECSBBSS----------CCHHHHHHEEEEEEEEEEEEE
T ss_pred             c--cCCCcCEEEECCchHH----------HHHHHHHhcCCCcEEEEEEcc
Confidence            0  2468999999887775          246788999999999998664

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.48  E-value=2.2e-13  Score=110.29  Aligned_cols=103  Identities=14%  Similarity=0.088  Sum_probs=81.4

Q ss_pred             CCeEEEEcCCCCccHhHHHHc-C-CCeEEEEeCChHHHHHHHHHHHhcCCC-ceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           32 YVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        32 ~~~VLDlGcG~G~~~~~l~~~-~-~~~v~giDis~~~l~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      +.+|||||||+|..+..++.. + .++++++|+|+.+++.|++.+...+.. .++.++++|+.+.  ...+  .+++||+
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~--l~~~--~~~~fD~  132 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDV--MSRL--ANDSYQL  132 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHH--GGGS--CTTCEEE
T ss_pred             CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHH--HHHh--cCCCcCe
Confidence            459999999999999888774 2 469999999999999999998876654 5699999987431  1111  2578999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      |++.....       ....+++.+.++|+|||++++.
T Consensus       133 V~~d~~~~-------~~~~~l~~~~~~LkpGG~lv~d  162 (221)
T 3dr5_A          133 VFGQVSPM-------DLKALVDAAWPLLRRGGALVLA  162 (221)
T ss_dssp             EEECCCTT-------THHHHHHHHHHHEEEEEEEEET
T ss_pred             EEEcCcHH-------HHHHHHHHHHHHcCCCcEEEEe
Confidence            98876433       2566899999999999999985

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.47  E-value=2e-13  Score=110.50  Aligned_cols=104  Identities=15%  Similarity=0.127  Sum_probs=81.7

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc-CC-CeEEEEeCChHHHHHHHHHHHhcCC----CceEEEEEcCCCCCchhhhhccc
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA-LI-ANYIGIDVATSGIGEARDTWENQRK----NFIAEFFEADPCAENFETQMQEK  102 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~-~~-~~v~giDis~~~l~~a~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~  102 (248)
                      ..++.+|||+|||+|..+..++.. +. .+|+|+|+++.+++.|+++....+.    ..++.+.++|+.....      .
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~------~  148 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA------E  148 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG------G
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcc------c
Confidence            558899999999999999888765 33 4999999999999999988765321    1248899999864332      2


Q ss_pred             CCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       103 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      .++||+|++...++.          +++++.++|+|||.++++++.
T Consensus       149 ~~~fD~i~~~~~~~~----------~~~~~~~~LkpgG~lv~~~~~  184 (226)
T 1i1n_A          149 EAPYDAIHVGAAAPV----------VPQALIDQLKPGGRLILPVGP  184 (226)
T ss_dssp             GCCEEEEEECSBBSS----------CCHHHHHTEEEEEEEEEEESC
T ss_pred             CCCcCEEEECCchHH----------HHHHHHHhcCCCcEEEEEEec
Confidence            568999999887665          235788999999999998665

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.47  E-value=1.5e-13  Score=113.16  Aligned_cols=114  Identities=16%  Similarity=0.064  Sum_probs=82.1

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc---CCCeEEEEeCChHHHHHHHHHHHhc---CCCce----------------------
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQ---RKNFI----------------------   82 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~---~~~~v~giDis~~~l~~a~~~~~~~---~~~~~----------------------   82 (248)
                      ++.+|||+|||+|..+..++..   +..+++|+|+|+.+++.|++.....   +...+                      
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  130 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence            5679999999999998888765   2348999999999999999765433   21111                      


Q ss_pred             ---EE-------------EEEcCCCCCchhhhhcccCCceeEEEeccchhhhcC-----CHHHHHHHHHHHhccccCCcE
Q 025775           83 ---AE-------------FFEADPCAENFETQMQEKANQADLVCCFQHLQMCFE-----TEERARRLLQNVSSLLKPGGY  141 (248)
Q Consensus        83 ---~~-------------~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~-----~~~~~~~~l~~~~~~LkpgG~  141 (248)
                         +.             +.++|+.+....... ....+||+|+|...+++...     ..+....+++++.++|+|||+
T Consensus       131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~  209 (250)
T 1o9g_A          131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAV-LAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAV  209 (250)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHH-HTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCE
T ss_pred             hhhhhhhccccccccccceeecccccccccccc-cCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcE
Confidence               44             899998663210000 01348999999866554221     146788999999999999999


Q ss_pred             EEEE
Q 025775          142 FLGI  145 (248)
Q Consensus       142 ~i~~  145 (248)
                      ++++
T Consensus       210 l~~~  213 (250)
T 1o9g_A          210 IAVT  213 (250)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9984

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.47  E-value=9.6e-14  Score=111.72  Aligned_cols=111  Identities=13%  Similarity=0.024  Sum_probs=77.6

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHh----cCCCceEEEEEcCCCCCchhhhhcccC
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWEN----QRKNFIAEFFEADPCAENFETQMQEKA  103 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~----~~~~~~~~~~~~d~~~~~~~~~~~~~~  103 (248)
                      ..++.+|||+|||+|..+..++... ..+|+|+|+|+.|++.+.+....    .+ ..++.++++|+.+.++      .+
T Consensus        25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~-~~~v~~~~~d~~~l~~------~~   97 (218)
T 3mq2_A           25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGG-LPNLLYLWATAERLPP------LS   97 (218)
T ss_dssp             TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTC-CTTEEEEECCSTTCCS------CC
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcC-CCceEEEecchhhCCC------CC
Confidence            5678899999999999999998873 45999999999999864433221    21 1258999999987665      24


Q ss_pred             CceeEEEeccchhhhc-CCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775          104 NQADLVCCFQHLQMCF-ETEERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       104 ~~fD~V~~~~~l~~~~-~~~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      +. |.|.+.+...... ...++...+++++.++|||||.+++++.
T Consensus        98 ~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  141 (218)
T 3mq2_A           98 GV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALN  141 (218)
T ss_dssp             CE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEec
Confidence            44 6665333211100 0112237899999999999999999643

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.47  E-value=8.8e-13  Score=110.15  Aligned_cols=120  Identities=13%  Similarity=0.127  Sum_probs=88.6

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      .++.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++....+.. ++.++++|+.+. +      ..++||+
T Consensus       108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~-~v~~~~~d~~~~-~------~~~~fD~  179 (276)
T 2b3t_A          108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDWFSA-L------AGQQFAM  179 (276)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCSTTGG-G------TTCCEEE
T ss_pred             cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEcchhhh-c------ccCCccE
Confidence            56789999999999999888755 4459999999999999999987665432 489999998552 2      2568999


Q ss_pred             EEeccchhhh-----------cCC----------HHHHHHHHHHHhccccCCcEEEEEecCh--hHHHHHHH
Q 025775          109 VCCFQHLQMC-----------FET----------EERARRLLQNVSSLLKPGGYFLGITPDS--STIWAKYQ  157 (248)
Q Consensus       109 V~~~~~l~~~-----------~~~----------~~~~~~~l~~~~~~LkpgG~~i~~~~~~--~~~~~~~~  157 (248)
                      |++....+..           +++          ......+++++.++|+|||.+++.....  ..+.+.+.
T Consensus       180 Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~  251 (276)
T 2b3t_A          180 IVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFI  251 (276)
T ss_dssp             EEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHH
T ss_pred             EEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHH
Confidence            9997422210           011          1456889999999999999999985432  44444443

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.47  E-value=2.1e-13  Score=112.26  Aligned_cols=109  Identities=16%  Similarity=0.136  Sum_probs=87.7

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc-C-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~-~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      ..++.+|||+|||+|..+..++.. + ..+++|+|+|+.+++.|+++....+...++.+.++|+.+. +      .+++|
T Consensus        91 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~------~~~~~  163 (255)
T 3mb5_A           91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG-I------EEENV  163 (255)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC-C------CCCSE
T ss_pred             CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc-c------CCCCc
Confidence            458899999999999999988876 3 4699999999999999999887665444589999998643 2      35789


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHH
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIW  153 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~  153 (248)
                      |+|++...         +...+++++.++|+|||.+++..+..+...
T Consensus       164 D~v~~~~~---------~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~  201 (255)
T 3mb5_A          164 DHVILDLP---------QPERVVEHAAKALKPGGFFVAYTPCSNQVM  201 (255)
T ss_dssp             EEEEECSS---------CGGGGHHHHHHHEEEEEEEEEEESSHHHHH
T ss_pred             CEEEECCC---------CHHHHHHHHHHHcCCCCEEEEEECCHHHHH
Confidence            99987431         234679999999999999999988775443

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.46  E-value=3.9e-13  Score=116.29  Aligned_cols=126  Identities=18%  Similarity=0.179  Sum_probs=93.2

Q ss_pred             HHHHHHHHh-cCCCCeEEEEcCCCCccHhHHHHcC--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh
Q 025775           20 AKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE   96 (248)
Q Consensus        20 ~~~~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~~--~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   96 (248)
                      +...++... ..++.+|||+|||+|..+..++...  ...++|+|+|+.|++.|++.....+.. ++.+.++|+.+.+. 
T Consensus       191 la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~~~~~-  268 (354)
T 3tma_A          191 LAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADARHLPR-  268 (354)
T ss_dssp             HHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGGGGGG-
T ss_pred             HHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChhhCcc-
Confidence            333344433 4578899999999999998887743  358999999999999999988776644 68999999866443 


Q ss_pred             hhhcccCCceeEEEeccchhhhcCC----HHHHHHHHHHHhccccCCcEEEEEecChhHH
Q 025775           97 TQMQEKANQADLVCCFQHLQMCFET----EERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (248)
Q Consensus        97 ~~~~~~~~~fD~V~~~~~l~~~~~~----~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~  152 (248)
                           ....||+|++..........    ......+++++.++|+|||.+++.+++...+
T Consensus       269 -----~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~~~~  323 (354)
T 3tma_A          269 -----FFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRPALL  323 (354)
T ss_dssp             -----TCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCHHHH
T ss_pred             -----ccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCHHHH
Confidence                 34668999996533221111    1224789999999999999999999986543

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.46  E-value=5e-13  Score=108.80  Aligned_cols=107  Identities=13%  Similarity=0.032  Sum_probs=77.0

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      +.++.+|||+|||+|..+..++..  +.+.|+|+|+|+.|++...+.....   .++.++++|+........   ..++|
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r---~nv~~i~~Da~~~~~~~~---~~~~~  147 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR---PNIFPLLADARFPQSYKS---VVENV  147 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC---TTEEEEECCTTCGGGTTT---TCCCE
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCeEEEEcccccchhhhc---cccce
Confidence            458999999999999999888765  3569999999999976544333222   238899999876432111   24689


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      |+|++..+.      ......+..++.+.|||||.|++.+.
T Consensus       148 D~I~~d~a~------~~~~~il~~~~~~~LkpGG~lvisik  182 (232)
T 3id6_C          148 DVLYVDIAQ------PDQTDIAIYNAKFFLKVNGDMLLVIK  182 (232)
T ss_dssp             EEEEECCCC------TTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEEEecCCC------hhHHHHHHHHHHHhCCCCeEEEEEEc
Confidence            999987643      22334455667779999999999843

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.46  E-value=2.7e-13  Score=115.64  Aligned_cols=104  Identities=12%  Similarity=0.010  Sum_probs=82.7

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCC--CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALI--ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~--~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      ..++.+|||||||+|..+..++....  .+|+|+|+|+.+++.|+++....+.. ++.+.++|+.+...      ..++|
T Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~-~v~~~~~d~~~~~~------~~~~f  145 (317)
T 1dl5_A           73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE-NVIFVCGDGYYGVP------EFSPY  145 (317)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCG------GGCCE
T ss_pred             CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEECChhhccc------cCCCe
Confidence            45889999999999999888876532  46999999999999999988765432 38899999855332      24689


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      |+|++..+++++.          +++.+.|+|||.+++.+...
T Consensus       146 D~Iv~~~~~~~~~----------~~~~~~LkpgG~lvi~~~~~  178 (317)
T 1dl5_A          146 DVIFVTVGVDEVP----------ETWFTQLKEGGRVIVPINLK  178 (317)
T ss_dssp             EEEEECSBBSCCC----------HHHHHHEEEEEEEEEEBCBG
T ss_pred             EEEEEcCCHHHHH----------HHHHHhcCCCcEEEEEECCC
Confidence            9999999888732          46788999999999986543

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.46  E-value=5.8e-13  Score=111.87  Aligned_cols=111  Identities=15%  Similarity=0.061  Sum_probs=83.2

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce---e
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA---D  107 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f---D  107 (248)
                      ++.+|||+|||+|..+..++..+..+++|+|+|+.+++.|++.....+...++.++++|+.+. +       .++|   |
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~-~-------~~~f~~~D  194 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP-F-------KEKFASIE  194 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG-G-------GGGTTTCC
T ss_pred             CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhh-c-------ccccCCCC
Confidence            567999999999999988887744599999999999999999887765444599999998652 2       2468   9


Q ss_pred             EEEeccchhh--------h-cCCHH------HHHHHHHHHh-ccccCCcEEEEEecCh
Q 025775          108 LVCCFQHLQM--------C-FETEE------RARRLLQNVS-SLLKPGGYFLGITPDS  149 (248)
Q Consensus       108 ~V~~~~~l~~--------~-~~~~~------~~~~~l~~~~-~~LkpgG~~i~~~~~~  149 (248)
                      +|+++--...        + +++..      +-..+++++. +.|+|||.+++.+...
T Consensus       195 ~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~  252 (284)
T 1nv8_A          195 MILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGED  252 (284)
T ss_dssp             EEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTT
T ss_pred             EEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECch
Confidence            9999621110        0 12111      1126889999 9999999999986654

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.46  E-value=3.3e-13  Score=109.75  Aligned_cols=105  Identities=16%  Similarity=0.155  Sum_probs=83.6

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      ++.+|||+|||+|..+..++... ..+++++|+++.+++.|++++...+...++.++++|+.+...  ... .+++||+|
T Consensus        54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~-~~~~fD~I  130 (233)
T 2gpy_A           54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGE--KLE-LYPLFDVL  130 (233)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHH--HHT-TSCCEEEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHH--hcc-cCCCccEE
Confidence            67899999999999998887763 469999999999999999988765543458999999854211  110 14689999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      ++....+       ....+++++.++|+|||.+++.
T Consensus       131 ~~~~~~~-------~~~~~l~~~~~~L~pgG~lv~~  159 (233)
T 2gpy_A          131 FIDAAKG-------QYRRFFDMYSPMVRPGGLILSD  159 (233)
T ss_dssp             EEEGGGS-------CHHHHHHHHGGGEEEEEEEEEE
T ss_pred             EECCCHH-------HHHHHHHHHHHHcCCCeEEEEE
Confidence            9877544       3678899999999999999987

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.46  E-value=2.6e-13  Score=111.83  Aligned_cols=104  Identities=13%  Similarity=-0.004  Sum_probs=81.2

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      ++.+|||||||+|..+..++.. +..+|+|+|+|+.+++.|++.....+.. ++.++++|+.+....   ....++||+|
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~-~v~~~~~d~~~~~~~---~~~~~~fD~I  155 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLK-GARALWGRAEVLARE---AGHREAYARA  155 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEECCHHHHTTS---TTTTTCEEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-ceEEEECcHHHhhcc---cccCCCceEE
Confidence            5789999999999998888765 4569999999999999999988766532 389999997442210   0024789999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      ++....        +...+++.+.++|+|||.+++..
T Consensus       156 ~s~a~~--------~~~~ll~~~~~~LkpgG~l~~~~  184 (249)
T 3g89_A          156 VARAVA--------PLCVLSELLLPFLEVGGAAVAMK  184 (249)
T ss_dssp             EEESSC--------CHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             EECCcC--------CHHHHHHHHHHHcCCCeEEEEEe
Confidence            986521        25678999999999999998864

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.45  E-value=2.5e-14  Score=114.23  Aligned_cols=114  Identities=14%  Similarity=0.043  Sum_probs=65.9

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      .++.+|||+|||+|..+..++... ..+++|+|+|+.+++.|+++....+.  ++.++++|+.+ .+.. .....++||+
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~-~~~~-~~~~~~~fD~  104 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA--VVDWAAADGIE-WLIE-RAERGRPWHA  104 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------------------CCHHHHHH-HHHH-HHHTTCCBSE
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEcchHh-hhhh-hhhccCcccE
Confidence            578899999999999999888874 34899999999999999988765542  46777777644 2210 0002378999


Q ss_pred             EEeccchhhhc----------------------CCHHHHHHHHHHHhccccCCcE-EEEEec
Q 025775          109 VCCFQHLQMCF----------------------ETEERARRLLQNVSSLLKPGGY-FLGITP  147 (248)
Q Consensus       109 V~~~~~l~~~~----------------------~~~~~~~~~l~~~~~~LkpgG~-~i~~~~  147 (248)
                      |++....+..-                      ...+....+++++.++|+|||+ +++.++
T Consensus       105 i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  166 (215)
T 4dzr_A          105 IVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG  166 (215)
T ss_dssp             EEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT
T ss_pred             EEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence            99964332100                      0011127889999999999999 665544

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.45  E-value=3.3e-13  Score=111.10  Aligned_cols=109  Identities=13%  Similarity=0.072  Sum_probs=87.3

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc-C-CCeEEEEeCChHHHHHHHHHHHhc-CCCceEEEEEcCCCCCchhhhhcccCCc
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQ-RKNFIAEFFEADPCAENFETQMQEKANQ  105 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~-~-~~~v~giDis~~~l~~a~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (248)
                      ..++.+|||+|||+|..+..++.. + ..+++++|+++.+++.|++..... + ..++.+.++|+.+.++      .+++
T Consensus        94 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-~~~v~~~~~d~~~~~~------~~~~  166 (258)
T 2pwy_A           94 LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-VENVRFHLGKLEEAEL------EEAA  166 (258)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-CCCEEEEESCGGGCCC------CTTC
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-CCCEEEEECchhhcCC------CCCC
Confidence            458899999999999999888876 3 469999999999999999987654 3 2358999999866433      3578


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHH
Q 025775          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIW  153 (248)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~  153 (248)
                      ||+|++..      .   +...+++++.++|+|||.+++..++...+.
T Consensus       167 ~D~v~~~~------~---~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~  205 (258)
T 2pwy_A          167 YDGVALDL------M---EPWKVLEKAALALKPDRFLVAYLPNITQVL  205 (258)
T ss_dssp             EEEEEEES------S---CGGGGHHHHHHHEEEEEEEEEEESCHHHHH
T ss_pred             cCEEEECC------c---CHHHHHHHHHHhCCCCCEEEEEeCCHHHHH
Confidence            99998732      1   234789999999999999999998875543

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.45  E-value=1.1e-12  Score=115.77  Aligned_cols=110  Identities=16%  Similarity=0.103  Sum_probs=81.6

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHH-------HHHHHhcCCC-ceEEEEEcCCCCCchhhhh
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEA-------RDTWENQRKN-FIAEFFEADPCAENFETQM   99 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a-------~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~   99 (248)
                      ..++.+|||||||+|..+..++.. +..+|+|+|+++.+++.|       +++....+.. .++.++++|.......  +
T Consensus       240 l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~--~  317 (433)
T 1u2z_A          240 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNR--V  317 (433)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHH--H
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccc--c
Confidence            457899999999999999888875 556899999999999988       6666554421 3588988865432110  0


Q ss_pred             cccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          100 QEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       100 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      ....++||+|++...++     .++...++.++.+.|+|||.+++.
T Consensus       318 ~~~~~~FDvIvvn~~l~-----~~d~~~~L~el~r~LKpGG~lVi~  358 (433)
T 1u2z_A          318 AELIPQCDVILVNNFLF-----DEDLNKKVEKILQTAKVGCKIISL  358 (433)
T ss_dssp             HHHGGGCSEEEECCTTC-----CHHHHHHHHHHHTTCCTTCEEEES
T ss_pred             ccccCCCCEEEEeCccc-----cccHHHHHHHHHHhCCCCeEEEEe
Confidence            00136899999865442     245677889999999999999986

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.45  E-value=2.8e-13  Score=113.17  Aligned_cols=107  Identities=14%  Similarity=0.059  Sum_probs=85.6

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhc-CCCceEEEEEcCCCCCchhhhhcccCCc
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQ-RKNFIAEFFEADPCAENFETQMQEKANQ  105 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (248)
                      ..++.+|||+|||+|..+..++..  +..+++|+|+++.+++.|+++.... + ..++.+.++|+.+ .+      .+++
T Consensus       108 ~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g-~~~v~~~~~d~~~-~~------~~~~  179 (275)
T 1yb2_A          108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD-IGNVRTSRSDIAD-FI------SDQM  179 (275)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC-CTTEEEECSCTTT-CC------CSCC
T ss_pred             CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCC-CCcEEEEECchhc-cC------cCCC
Confidence            347889999999999999888876  3459999999999999999988655 3 2348999999866 22      3568


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHH
Q 025775          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (248)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~  152 (248)
                      ||+|++..         ++...+++++.++|+|||.+++.+++....
T Consensus       180 fD~Vi~~~---------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~  217 (275)
T 1yb2_A          180 YDAVIADI---------PDPWNHVQKIASMMKPGSVATFYLPNFDQS  217 (275)
T ss_dssp             EEEEEECC---------SCGGGSHHHHHHTEEEEEEEEEEESSHHHH
T ss_pred             ccEEEEcC---------cCHHHHHHHHHHHcCCCCEEEEEeCCHHHH
Confidence            99998722         123578999999999999999999887543

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.44  E-value=5.8e-13  Score=107.85  Aligned_cols=106  Identities=17%  Similarity=0.102  Sum_probs=81.1

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc-C-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~-~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      ..++.+|||+|||+|..+..++.. + .++|+|+|+|+.|++.+++.....   .++.++++|+.+......   ..++|
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~d~~~~~~~~~---~~~~~  144 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYRA---LVPKV  144 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGTT---TCCCE
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---CCCEEEEccCCCcchhhc---ccCCc
Confidence            347889999999999999988865 3 369999999999999988876543   248999999876322111   24589


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      |+|++...      .......++.++.++|+|||.+++.+
T Consensus       145 D~v~~~~~------~~~~~~~~l~~~~~~LkpgG~l~~~~  178 (227)
T 1g8a_A          145 DVIFEDVA------QPTQAKILIDNAEVYLKRGGYGMIAV  178 (227)
T ss_dssp             EEEEECCC------STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEECCC------CHhHHHHHHHHHHHhcCCCCEEEEEE
Confidence            99997653      22234556999999999999999873

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.44  E-value=6.1e-13  Score=114.11  Aligned_cols=117  Identities=15%  Similarity=0.082  Sum_probs=86.6

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCc-eEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNF-IAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      .++.+|||+|||+|..+..++..+. +|+|+|+|+.+++.|++.....+... ++.++++|+.+.  ........++||+
T Consensus       152 ~~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~--l~~~~~~~~~fD~  228 (332)
T 2igt_A          152 DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKF--IQREERRGSTYDI  228 (332)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHH--HHHHHHHTCCBSE
T ss_pred             CCCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHH--HHHHHhcCCCceE
Confidence            4678999999999999999988776 99999999999999999887655433 488999997442  1111111468999


Q ss_pred             EEeccc---hh---hhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          109 VCCFQH---LQ---MCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       109 V~~~~~---l~---~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      |++...   ..   ..+...+....++..+.++|+|||+++++..+.
T Consensus       229 Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~  275 (332)
T 2igt_A          229 ILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS  275 (332)
T ss_dssp             EEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred             EEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCC
Confidence            998431   11   011235567889999999999999988775443

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.44  E-value=1.4e-12  Score=111.91  Aligned_cols=116  Identities=17%  Similarity=0.063  Sum_probs=86.1

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc-CC-CeEEEEeCChHHHHHHHHHHHhcC----------CCceEEEEEcCCCCCchh
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA-LI-ANYIGIDVATSGIGEARDTWENQR----------KNFIAEFFEADPCAENFE   96 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~-~~-~~v~giDis~~~l~~a~~~~~~~~----------~~~~~~~~~~d~~~~~~~   96 (248)
                      ..++.+|||+|||+|..+..++.. +. .+++|+|+++.+++.|+++....+          ...++.+.++|+.+... 
T Consensus       103 ~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~-  181 (336)
T 2b25_A          103 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE-  181 (336)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccc-
Confidence            568899999999999999888875 43 699999999999999999876421          11358999999876421 


Q ss_pred             hhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHH
Q 025775           97 TQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ  157 (248)
Q Consensus        97 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~  157 (248)
                       .+  .+++||+|++.....         ..++.++.++|+|||.+++..++...+...+.
T Consensus       182 -~~--~~~~fD~V~~~~~~~---------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~  230 (336)
T 2b25_A          182 -DI--KSLTFDAVALDMLNP---------HVTLPVFYPHLKHGGVCAVYVVNITQVIELLD  230 (336)
T ss_dssp             ---------EEEEEECSSST---------TTTHHHHGGGEEEEEEEEEEESSHHHHHHHHH
T ss_pred             -cc--CCCCeeEEEECCCCH---------HHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Confidence             01  246799998854322         22789999999999999999988876654443

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.44  E-value=7.8e-13  Score=108.22  Aligned_cols=110  Identities=11%  Similarity=0.048  Sum_probs=87.3

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      ..++.+|||+|||+|..+..++.. ..+++++|+++.+++.|+++....+...++.+.++|+.+..+      .+++||+
T Consensus        89 ~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~------~~~~~D~  161 (248)
T 2yvl_A           89 LNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEV------PEGIFHA  161 (248)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCC------CTTCBSE
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhccc------CCCcccE
Confidence            347889999999999999888877 559999999999999999988665433458899999866432      2467999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHH
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA  154 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~  154 (248)
                      |++...         +...+++++.++|+|||.+++..++.+.+.+
T Consensus       162 v~~~~~---------~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~  198 (248)
T 2yvl_A          162 AFVDVR---------EPWHYLEKVHKSLMEGAPVGFLLPTANQVIK  198 (248)
T ss_dssp             EEECSS---------CGGGGHHHHHHHBCTTCEEEEEESSHHHHHH
T ss_pred             EEECCc---------CHHHHHHHHHHHcCCCCEEEEEeCCHHHHHH
Confidence            987431         2346789999999999999999998755443

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.44  E-value=3.4e-13  Score=117.03  Aligned_cols=107  Identities=14%  Similarity=0.203  Sum_probs=80.3

Q ss_pred             HHHHhcCCCCeEEEEcCC------CCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCch
Q 025775           24 LIKIYSHPYVTVCDLYCG------AGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF   95 (248)
Q Consensus        24 li~~~~~~~~~VLDlGcG------~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~   95 (248)
                      ++..+..++.+|||||||      +|+.+..++..  +.++|+|+|+|+.|..      .    ..++.|+++|+.+.++
T Consensus       209 lL~~l~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~------~----~~rI~fv~GDa~dlpf  278 (419)
T 3sso_A          209 HFRDYRNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV------D----ELRIRTIQGDQNDAEF  278 (419)
T ss_dssp             HHGGGTTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG------C----BTTEEEEECCTTCHHH
T ss_pred             HHHhhcCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh------c----CCCcEEEEecccccch
Confidence            444455577899999999      77766666554  4569999999999831      1    1249999999988666


Q ss_pred             hhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775           96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus        96 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      ...+...+++||+|+|..+ |+    ..+...+++++.++|||||++++.
T Consensus       279 ~~~l~~~d~sFDlVisdgs-H~----~~d~~~aL~el~rvLKPGGvlVi~  323 (419)
T 3sso_A          279 LDRIARRYGPFDIVIDDGS-HI----NAHVRTSFAALFPHVRPGGLYVIE  323 (419)
T ss_dssp             HHHHHHHHCCEEEEEECSC-CC----HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             hhhhhcccCCccEEEECCc-cc----chhHHHHHHHHHHhcCCCeEEEEE
Confidence            4322222578999998753 54    456788999999999999999997

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.44  E-value=4.7e-13  Score=109.12  Aligned_cols=104  Identities=13%  Similarity=0.098  Sum_probs=81.4

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      ..++.+|||+|||+|..+..++.....+|+|+|+++.+++.|+++....+.. ++.+.++|+. ..+.     ...+||+
T Consensus        89 ~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~-~~~~-----~~~~fD~  161 (235)
T 1jg1_A           89 LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVK-NVHVILGDGS-KGFP-----PKAPYDV  161 (235)
T ss_dssp             CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGG-GCCG-----GGCCEEE
T ss_pred             CCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEECCcc-cCCC-----CCCCccE
Confidence            4578899999999999998887763268999999999999999988765432 3889999972 2221     1346999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      |++..+++++.          .++.+.|+|||.+++.+++.
T Consensus       162 Ii~~~~~~~~~----------~~~~~~L~pgG~lvi~~~~~  192 (235)
T 1jg1_A          162 IIVTAGAPKIP----------EPLIEQLKIGGKLIIPVGSY  192 (235)
T ss_dssp             EEECSBBSSCC----------HHHHHTEEEEEEEEEEECSS
T ss_pred             EEECCcHHHHH----------HHHHHhcCCCcEEEEEEecC
Confidence            99998887622          36788999999999998764

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.43  E-value=8.6e-13  Score=108.37  Aligned_cols=115  Identities=17%  Similarity=0.150  Sum_probs=81.8

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCC-CeEEEEeCChHHHHHHHHHHHhc--------CCCceEEEEEcCCCCCchhhhhc
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQ--------RKNFIAEFFEADPCAENFETQMQ  100 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~-~~v~giDis~~~l~~a~~~~~~~--------~~~~~~~~~~~d~~~~~~~~~~~  100 (248)
                      .++.+|||||||+|.++..++.... ..++|+|+|+.+++.|+++....        +. .++.++++|+.+. +...+ 
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~nv~~~~~D~~~~-l~~~~-  124 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGF-QNINVLRGNAMKF-LPNFF-  124 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTT-TTEEEEECCTTSC-GGGTS-
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCC-CcEEEEeccHHHH-HHHhc-
Confidence            3678999999999999999887753 48999999999999998876543        21 2589999998652 11111 


Q ss_pred             ccCCceeEEEeccchhhhcCCHH-----HHHHHHHHHhccccCCcEEEEEecCh
Q 025775          101 EKANQADLVCCFQHLQMCFETEE-----RARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       101 ~~~~~fD~V~~~~~l~~~~~~~~-----~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                       ..+++|.|++.+.-.+ +....     ....++.++.++|+|||.+++.+...
T Consensus       125 -~~~~~d~v~~~~p~p~-~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~  176 (246)
T 2vdv_E          125 -EKGQLSKMFFCFPDPH-FKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVK  176 (246)
T ss_dssp             -CTTCEEEEEEESCCCC-------CSSCCCHHHHHHHHHHEEEEEEEEEEESCH
T ss_pred             -cccccCEEEEECCCcc-cccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccH
Confidence             3578999875442111 00000     01479999999999999999976654

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.43  E-value=9.9e-13  Score=109.75  Aligned_cols=113  Identities=15%  Similarity=0.071  Sum_probs=88.6

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhc-C-CCceEEEEEcCCCCCchhhhhcccCC
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQ-R-KNFIAEFFEADPCAENFETQMQEKAN  104 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~-~-~~~~~~~~~~d~~~~~~~~~~~~~~~  104 (248)
                      ..++.+|||+|||+|..+..++..  +..+++++|+++.+++.|++..... + ...++.+.++|+.+..+      .++
T Consensus        97 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~------~~~  170 (280)
T 1i9g_A           97 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL------PDG  170 (280)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC------CTT
T ss_pred             CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCC------CCC
Confidence            458899999999999999888875  3469999999999999999887654 2 12348899999866543      356


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHH
Q 025775          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~  156 (248)
                      +||+|++...         +...+++++.++|+|||.+++.+++.+.+.+..
T Consensus       171 ~~D~v~~~~~---------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~  213 (280)
T 1i9g_A          171 SVDRAVLDML---------APWEVLDAVSRLLVAGGVLMVYVATVTQLSRIV  213 (280)
T ss_dssp             CEEEEEEESS---------CGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHH
T ss_pred             ceeEEEECCc---------CHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHH
Confidence            8999988331         133689999999999999999999876554433

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.43  E-value=3.2e-13  Score=108.33  Aligned_cols=87  Identities=18%  Similarity=0.224  Sum_probs=71.0

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      .++.+|||+|||+|..+..+.    .+++|+|+|+.            +    +.+.++|+.+.++      .+++||+|
T Consensus        66 ~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~------------~----~~~~~~d~~~~~~------~~~~fD~v  119 (215)
T 2zfu_A           66 PASLVVADFGCGDCRLASSIR----NPVHCFDLASL------------D----PRVTVCDMAQVPL------EDESVDVA  119 (215)
T ss_dssp             CTTSCEEEETCTTCHHHHHCC----SCEEEEESSCS------------S----TTEEESCTTSCSC------CTTCEEEE
T ss_pred             CCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCC------------C----ceEEEeccccCCC------CCCCEeEE
Confidence            467899999999998776662    48999999987            1    5588999877554      46789999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      ++..++|+     .+...+++++.++|+|||.+++..+
T Consensus       120 ~~~~~l~~-----~~~~~~l~~~~~~L~~gG~l~i~~~  152 (215)
T 2zfu_A          120 VFCLSLMG-----TNIRDFLEEANRVLKPGGLLKVAEV  152 (215)
T ss_dssp             EEESCCCS-----SCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEehhccc-----cCHHHHHHHHHHhCCCCeEEEEEEc
Confidence            99998873     2467899999999999999998743

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.43  E-value=2e-13  Score=112.13  Aligned_cols=106  Identities=12%  Similarity=0.038  Sum_probs=82.7

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc--cCCce
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQA  106 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~f  106 (248)
                      ++.+|||||||+|..+..++..  ..++|+|+|+++.+++.|++++...+...++.++++|+.+.  ...+..  ..++|
T Consensus        60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~--l~~~~~~~~~~~f  137 (242)
T 3r3h_A           60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDT--LHSLLNEGGEHQF  137 (242)
T ss_dssp             TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHH--HHHHHHHHCSSCE
T ss_pred             CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH--HHHHhhccCCCCE
Confidence            5789999999999999988875  24699999999999999999887766555699999997432  111100  14789


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      |+|++....       .....+++++.++|+|||++++.
T Consensus       138 D~V~~d~~~-------~~~~~~l~~~~~~LkpGG~lv~d  169 (242)
T 3r3h_A          138 DFIFIDADK-------TNYLNYYELALKLVTPKGLIAID  169 (242)
T ss_dssp             EEEEEESCG-------GGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEEcCCh-------HHhHHHHHHHHHhcCCCeEEEEE
Confidence            999886642       23567899999999999999986

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.43  E-value=6.3e-13  Score=106.41  Aligned_cols=102  Identities=14%  Similarity=0.085  Sum_probs=80.1

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc-C-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~-~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      ++.+|||+|||+|..+..++.. + ..+++++|+|+.+++.|++++...+...++.++++|+.+.     ++..++ ||+
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~-fD~  129 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGI-----AAGQRD-IDI  129 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHH-----HTTCCS-EEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHH-----hccCCC-CCE
Confidence            6789999999999999888765 2 4699999999999999999887655444589999987431     111245 999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      |++....       .....+++++.++|+|||++++.
T Consensus       130 v~~~~~~-------~~~~~~l~~~~~~LkpgG~lv~~  159 (210)
T 3c3p_A          130 LFMDCDV-------FNGADVLERMNRCLAKNALLIAV  159 (210)
T ss_dssp             EEEETTT-------SCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             EEEcCCh-------hhhHHHHHHHHHhcCCCeEEEEE
Confidence            9886432       23567899999999999999985

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.42  E-value=3.6e-13  Score=106.83  Aligned_cols=109  Identities=11%  Similarity=0.095  Sum_probs=76.6

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc-C--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCc-----------
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA-L--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN-----------   94 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~-~--~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------   94 (248)
                      +.++.+|||+|||+|..+..++.. +  ..+++|+|+|+.+        ..    .++.++++|+.+..           
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~--------~~----~~v~~~~~d~~~~~~~~~~~~~~i~   87 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD--------PI----PNVYFIQGEIGKDNMNNIKNINYID   87 (201)
T ss_dssp             CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC--------CC----TTCEEEECCTTTTSSCCC-------
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC--------CC----CCceEEEccccchhhhhhccccccc
Confidence            568889999999999999988876 3  3589999999942        01    13789999997754           


Q ss_pred             ------hhhhhc--ccCCceeEEEeccchhhhcCC-HH------HHHHHHHHHhccccCCcEEEEEecCh
Q 025775           95 ------FETQMQ--EKANQADLVCCFQHLQMCFET-EE------RARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus        95 ------~~~~~~--~~~~~fD~V~~~~~l~~~~~~-~~------~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                            ....+.  -.+++||+|++..++|+.-.. .+      ....+++++.++|+|||.|++.+...
T Consensus        88 ~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  157 (201)
T 2plw_A           88 NMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLG  157 (201)
T ss_dssp             ----CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             cccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCC
Confidence                  000000  035689999998876642111 11      12358899999999999999976554

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.42  E-value=5.9e-13  Score=102.70  Aligned_cols=110  Identities=18%  Similarity=0.079  Sum_probs=80.2

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc-CC-CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhc--ccCC
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA-LI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ--EKAN  104 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~-~~-~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~  104 (248)
                      ..++.+|||+|||+|..+..++.. +. .+++|+|+++ +++.           .++.+.++|+.+.+....+.  -.++
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-----------~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-----------VGVDFLQGDFRDELVMKALLERVGDS   87 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-----------TTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-----------CcEEEEEcccccchhhhhhhccCCCC
Confidence            457889999999999999888776 33 6999999999 7643           13889999997754111110  0357


Q ss_pred             ceeEEEeccchhhhcCC-HHH------HHHHHHHHhccccCCcEEEEEecChh
Q 025775          105 QADLVCCFQHLQMCFET-EER------ARRLLQNVSSLLKPGGYFLGITPDSS  150 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~-~~~------~~~~l~~~~~~LkpgG~~i~~~~~~~  150 (248)
                      +||+|++...+++.-.. .+.      ...+++++.++|+|||.+++..+...
T Consensus        88 ~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  140 (180)
T 1ej0_A           88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE  140 (180)
T ss_dssp             CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST
T ss_pred             ceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence            89999998776642111 111      26899999999999999999866553

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.42  E-value=9.5e-13  Score=107.55  Aligned_cols=108  Identities=15%  Similarity=0.123  Sum_probs=83.2

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcC--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc------
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE------  101 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~--~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~------  101 (248)
                      .++.+|||||||+|..+..++...  ..+++++|+++.+++.|++++...+...++.+.++|+.+.  ......      
T Consensus        59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~--~~~~~~~~~~~~  136 (239)
T 2hnk_A           59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALET--LQVLIDSKSAPS  136 (239)
T ss_dssp             HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH--HHHHHHCSSCCG
T ss_pred             hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHH--HHHHHhhccccc
Confidence            367899999999999999888762  4699999999999999999887655444589999987431  111100      


Q ss_pred             -----c-C-CceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775          102 -----K-A-NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       102 -----~-~-~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                           . + ++||+|++.....       ....+++++.++|+|||++++..
T Consensus       137 ~~~~f~~~~~~fD~I~~~~~~~-------~~~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          137 WASDFAFGPSSIDLFFLDADKE-------NYPNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             GGTTTCCSTTCEEEEEECSCGG-------GHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ccccccCCCCCcCEEEEeCCHH-------HHHHHHHHHHHHcCCCeEEEEEc
Confidence                 1 2 6899999876433       35678999999999999999974

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.42  E-value=9.4e-14  Score=116.49  Aligned_cols=99  Identities=10%  Similarity=-0.009  Sum_probs=72.9

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEE-EEcCCCCCchhhhhcccCCceeEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEF-FEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      ++.+|||+|||||.++..++..+.++|+|+|+|+.|++.+.+...      ++.. ...|+...... .+  +..+||+|
T Consensus        85 ~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~------rv~~~~~~ni~~l~~~-~l--~~~~fD~v  155 (291)
T 3hp7_A           85 EDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDD------RVRSMEQYNFRYAEPV-DF--TEGLPSFA  155 (291)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTCT------TEEEECSCCGGGCCGG-GC--TTCCCSEE
T ss_pred             cccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc------ccceecccCceecchh-hC--CCCCCCEE
Confidence            678999999999999998888877799999999999987543211      1222 22333222211 11  23459999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +|..+++.       +..++.++.++|+|||.+++.
T Consensus       156 ~~d~sf~s-------l~~vL~e~~rvLkpGG~lv~l  184 (291)
T 3hp7_A          156 SIDVSFIS-------LNLILPALAKILVDGGQVVAL  184 (291)
T ss_dssp             EECCSSSC-------GGGTHHHHHHHSCTTCEEEEE
T ss_pred             EEEeeHhh-------HHHHHHHHHHHcCcCCEEEEE
Confidence            99887775       477999999999999999887

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.42  E-value=4.7e-13  Score=108.51  Aligned_cols=104  Identities=11%  Similarity=0.087  Sum_probs=80.5

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc-CC------CeEEEEeCChHHHHHHHHHHHhcCC----CceEEEEEcCCCCCchhh
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA-LI------ANYIGIDVATSGIGEARDTWENQRK----NFIAEFFEADPCAENFET   97 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~-~~------~~v~giDis~~~l~~a~~~~~~~~~----~~~~~~~~~d~~~~~~~~   97 (248)
                      ..++.+|||+|||+|..+..++.. +.      .+|+++|+++.+++.|+++....+.    ..++.+.++|+... +. 
T Consensus        82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~-  159 (227)
T 1r18_A           82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKG-YP-  159 (227)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGC-CG-
T ss_pred             CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccC-CC-
Confidence            457899999999999998888764 32      4899999999999999987654220    12488999998552 21 


Q ss_pred             hhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775           98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus        98 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                          ..++||+|++...++++          .+++.+.|+|||.+++.+..
T Consensus       160 ----~~~~fD~I~~~~~~~~~----------~~~~~~~LkpgG~lvi~~~~  196 (227)
T 1r18_A          160 ----PNAPYNAIHVGAAAPDT----------PTELINQLASGGRLIVPVGP  196 (227)
T ss_dssp             ----GGCSEEEEEECSCBSSC----------CHHHHHTEEEEEEEEEEESC
T ss_pred             ----cCCCccEEEECCchHHH----------HHHHHHHhcCCCEEEEEEec
Confidence                23689999999887762          26788999999999998654

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.41  E-value=8.8e-13  Score=111.81  Aligned_cols=112  Identities=13%  Similarity=0.064  Sum_probs=81.4

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHh---cCCCceEEEEEcCCCCCchhhhhcc-cCC
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWEN---QRKNFIAEFFEADPCAENFETQMQE-KAN  104 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~---~~~~~~~~~~~~d~~~~~~~~~~~~-~~~  104 (248)
                      +++.+|||||||+|..+..++.. +..+++++|+|+.+++.|++.+..   .....++.++++|+.+..     .. .++
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~-----~~~~~~  168 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFV-----RQTPDN  168 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHH-----HSSCTT
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHH-----HhccCC
Confidence            46789999999999999988876 356999999999999999987632   111235899999974321     11 257


Q ss_pred             ceeEEEeccchhhhcCCHHHH--HHHHHHHhccccCCcEEEEEecC
Q 025775          105 QADLVCCFQHLQMCFETEERA--RRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~--~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      +||+|++....+.  .....+  .++++++.++|+|||++++...+
T Consensus       169 ~fDvIi~d~~~~~--~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  212 (304)
T 3bwc_A          169 TYDVVIIDTTDPA--GPASKLFGEAFYKDVLRILKPDGICCNQGES  212 (304)
T ss_dssp             CEEEEEEECC-----------CCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             ceeEEEECCCCcc--ccchhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence            8999999665443  112222  68999999999999999998655

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.41  E-value=4.1e-13  Score=104.20  Aligned_cols=108  Identities=12%  Similarity=0.132  Sum_probs=78.4

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      .++.+|||+|||+|..+..++...  +++|+|+|+.|++.      .    .++.++++|+.+ .+      .+++||+|
T Consensus        22 ~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~------~----~~~~~~~~d~~~-~~------~~~~fD~i   82 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES------H----RGGNLVRADLLC-SI------NQESVDVV   82 (170)
T ss_dssp             CCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT------C----SSSCEEECSTTT-TB------CGGGCSEE
T ss_pred             CCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc------c----cCCeEEECChhh-hc------ccCCCCEE
Confidence            467899999999999988887766  99999999999987      1    237899999876 22      24789999


Q ss_pred             EeccchhhhcCC-----HHHHHHHHHHHhccccCCcEEEEEecCh---hHHHHHHH
Q 025775          110 CCFQHLQMCFET-----EERARRLLQNVSSLLKPGGYFLGITPDS---STIWAKYQ  157 (248)
Q Consensus       110 ~~~~~l~~~~~~-----~~~~~~~l~~~~~~LkpgG~~i~~~~~~---~~~~~~~~  157 (248)
                      ++...++..-..     ......++.++.+.| |||.+++..+..   ..+.+.+.
T Consensus        83 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~  137 (170)
T 3q87_B           83 VFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLE  137 (170)
T ss_dssp             EECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHH
T ss_pred             EECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHH
Confidence            998776642111     112345677777777 999999986543   44444443

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.40  E-value=1.6e-12  Score=114.14  Aligned_cols=125  Identities=17%  Similarity=0.097  Sum_probs=92.3

Q ss_pred             HHHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhccc
Q 025775           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (248)
Q Consensus        23 ~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  102 (248)
                      .++..+..++.+|||+|||+|..+..++..+..+|+|+|+|+.+++.|++....++...++.++++|+.+.  ...+...
T Consensus       209 ~~~~~~~~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~--~~~~~~~  286 (396)
T 2as0_A          209 LALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEE--MEKLQKK  286 (396)
T ss_dssp             HHHGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH--HHHHHHT
T ss_pred             HHHHHHhhCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHH--HHHHHhh
Confidence            34445555789999999999999999988766799999999999999999887665433689999997442  1111112


Q ss_pred             CCceeEEEeccchh-----hhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          103 ANQADLVCCFQHLQ-----MCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       103 ~~~fD~V~~~~~l~-----~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      ..+||+|++.....     ..+........++.++.++|+|||.+++...+.
T Consensus       287 ~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  338 (396)
T 2as0_A          287 GEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ  338 (396)
T ss_dssp             TCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred             CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence            56899999853211     111123567889999999999999998886654

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.40  E-value=9.6e-12  Score=107.55  Aligned_cols=103  Identities=23%  Similarity=0.279  Sum_probs=85.1

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      +..+|+|||||+|..+..++... ..+++..|. |.+++.|++...... ..+++++.+|+...+.        ..+|+|
T Consensus       179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~-~~rv~~~~gD~~~~~~--------~~~D~~  248 (353)
T 4a6d_A          179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE-EEQIDFQEGDFFKDPL--------PEADLY  248 (353)
T ss_dssp             GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC---CCSEEEEESCTTTSCC--------CCCSEE
T ss_pred             cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc-cCceeeecCccccCCC--------CCceEE
Confidence            56799999999999999998873 347888887 889999988765332 3469999999876433        357999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      ++..++|+  .+.++...+++++++.|+|||.+++.
T Consensus       249 ~~~~vlh~--~~d~~~~~iL~~~~~al~pgg~lli~  282 (353)
T 4a6d_A          249 ILARVLHD--WADGKCSHLLERIYHTCKPGGGILVI  282 (353)
T ss_dssp             EEESSGGG--SCHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             Eeeeeccc--CCHHHHHHHHHHHHhhCCCCCEEEEE
Confidence            99999998  67888899999999999999999887

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.40  E-value=1.2e-12  Score=107.69  Aligned_cols=106  Identities=10%  Similarity=0.035  Sum_probs=82.3

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc-C-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc---cCCc
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE---KANQ  105 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~-~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~  105 (248)
                      ++.+|||||||+|..+..++.. + ..+++++|+++.+++.|++.+...+...++.++++|+.+.  .+.+..   ..++
T Consensus        79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~--l~~l~~~~~~~~~  156 (247)
T 1sui_A           79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPV--LDEMIKDEKNHGS  156 (247)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHH--HHHHHHSGGGTTC
T ss_pred             CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHH--HHHHHhccCCCCC
Confidence            5689999999999999888776 2 4699999999999999999887765545689999997431  111100   1478


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      ||+|++....       .....+++++.++|+|||++++.
T Consensus       157 fD~V~~d~~~-------~~~~~~l~~~~~~LkpGG~lv~d  189 (247)
T 1sui_A          157 YDFIFVDADK-------DNYLNYHKRLIDLVKVGGVIGYD  189 (247)
T ss_dssp             BSEEEECSCS-------TTHHHHHHHHHHHBCTTCCEEEE
T ss_pred             EEEEEEcCch-------HHHHHHHHHHHHhCCCCeEEEEe
Confidence            9999886532       23567899999999999999986

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.40  E-value=1.7e-12  Score=108.88  Aligned_cols=112  Identities=15%  Similarity=0.050  Sum_probs=81.2

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeC-ChHHHHHHHHHH-----HhcCCC----ceEEEEEcCCCCCc--hhh
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDV-ATSGIGEARDTW-----ENQRKN----FIAEFFEADPCAEN--FET   97 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDi-s~~~l~~a~~~~-----~~~~~~----~~~~~~~~d~~~~~--~~~   97 (248)
                      .++.+|||||||+|..+..++..+..+|+|+|+ |+.+++.|++..     ...+..    .++.+...|..+..  +..
T Consensus        78 ~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  157 (281)
T 3bzb_A           78 IAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQR  157 (281)
T ss_dssp             TTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHH
T ss_pred             cCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence            467899999999999988887776669999999 899999999887     322211    24677766654421  111


Q ss_pred             hhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhcccc---C--CcEEEEEec
Q 025775           98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLK---P--GGYFLGITP  147 (248)
Q Consensus        98 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lk---p--gG~~i~~~~  147 (248)
                      .+  ..++||+|++..++++    .+....+++.+.++|+   |  ||.+++.+.
T Consensus       158 ~~--~~~~fD~Ii~~dvl~~----~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~  206 (281)
T 3bzb_A          158 CT--GLQRFQVVLLADLLSF----HQAHDALLRSVKMLLALPANDPTAVALVTFT  206 (281)
T ss_dssp             HH--SCSSBSEEEEESCCSC----GGGHHHHHHHHHHHBCCTTTCTTCEEEEEEC
T ss_pred             hc--cCCCCCEEEEeCcccC----hHHHHHHHHHHHHHhcccCCCCCCEEEEEEE
Confidence            01  2578999999776665    4457889999999999   9  998777643

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.40  E-value=4.1e-12  Score=100.80  Aligned_cols=101  Identities=12%  Similarity=0.007  Sum_probs=75.1

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      .++.+|||+|||+|..+..++..+..+++|+|+|+.+++.|+++..      ++.++++|+.+  +       +++||+|
T Consensus        50 ~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d~~~--~-------~~~~D~v  114 (200)
T 1ne2_A           50 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSE--I-------SGKYDTW  114 (200)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGG--C-------CCCEEEE
T ss_pred             CCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC------CCEEEECcHHH--C-------CCCeeEE
Confidence            4778999999999999988887766689999999999999998765      27899999854  2       3689999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      ++...+|+.  .......+++++.+.+  |+++++..+..
T Consensus       115 ~~~~p~~~~--~~~~~~~~l~~~~~~~--g~~~~~~~~~~  150 (200)
T 1ne2_A          115 IMNPPFGSV--VKHSDRAFIDKAFETS--MWIYSIGNAKA  150 (200)
T ss_dssp             EECCCC---------CHHHHHHHHHHE--EEEEEEEEGGG
T ss_pred             EECCCchhc--cCchhHHHHHHHHHhc--CcEEEEEcCch
Confidence            999887762  2233356788888888  55555444433

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.39  E-value=3.8e-12  Score=105.53  Aligned_cols=112  Identities=11%  Similarity=0.095  Sum_probs=81.5

Q ss_pred             CCeEEEEcCCC--CccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc--cCCc
Q 025775           32 YVTVCDLYCGA--GVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQ  105 (248)
Q Consensus        32 ~~~VLDlGcG~--G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~  105 (248)
                      ...|||||||+  +..+..++..  +..+|+++|.|+.||+.|++++.... ..++.|+++|+.+...  .+..  ....
T Consensus        79 ~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-~~~~~~v~aD~~~~~~--~l~~~~~~~~  155 (277)
T 3giw_A           79 IRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP-EGRTAYVEADMLDPAS--ILDAPELRDT  155 (277)
T ss_dssp             CCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS-SSEEEEEECCTTCHHH--HHTCHHHHTT
T ss_pred             CCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC-CCcEEEEEecccChhh--hhcccccccc
Confidence            36899999997  5566665543  45699999999999999999886532 2358999999977421  0100  0233


Q ss_pred             ee-----EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775          106 AD-----LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       106 fD-----~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      ||     .|++..++|++ ...++...++.++.+.|+|||+|+++..
T Consensus       156 ~D~~~p~av~~~avLH~l-~d~~~p~~~l~~l~~~L~PGG~Lvls~~  201 (277)
T 3giw_A          156 LDLTRPVALTVIAIVHFV-LDEDDAVGIVRRLLEPLPSGSYLAMSIG  201 (277)
T ss_dssp             CCTTSCCEEEEESCGGGS-CGGGCHHHHHHHHHTTSCTTCEEEEEEE
T ss_pred             cCcCCcchHHhhhhHhcC-CchhhHHHHHHHHHHhCCCCcEEEEEec
Confidence            44     57788999983 2223367899999999999999999843

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.39  E-value=2.3e-12  Score=104.98  Aligned_cols=106  Identities=15%  Similarity=0.072  Sum_probs=81.7

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcC--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccC--Cce
Q 025775           31 PYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA--NQA  106 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~--~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~f  106 (248)
                      ++.+|||+|||+|..+..++...  ..+++++|+++.+++.|++.+...+...++.++++|+.+  ....+...+  ++|
T Consensus        72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~--~l~~l~~~~~~~~f  149 (232)
T 3cbg_A           72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALA--TLEQLTQGKPLPEF  149 (232)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH--HHHHHHTSSSCCCE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH--HHHHHHhcCCCCCc
Confidence            57899999999999988887752  359999999999999999988765544468999998633  111111112  789


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      |+|++....       .....+++++.++|+|||++++.
T Consensus       150 D~V~~d~~~-------~~~~~~l~~~~~~LkpgG~lv~~  181 (232)
T 3cbg_A          150 DLIFIDADK-------RNYPRYYEIGLNLLRRGGLMVID  181 (232)
T ss_dssp             EEEEECSCG-------GGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             CEEEECCCH-------HHHHHHHHHHHHHcCCCeEEEEe
Confidence            999876542       23567899999999999999987

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.39  E-value=2e-12  Score=102.30  Aligned_cols=109  Identities=14%  Similarity=0.097  Sum_probs=77.5

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc--c---C
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--K---A  103 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~---~  103 (248)
                      ..++.+|||+|||+|.++..++.. ..+|+|+|+++...            ...+.++++|+.+......+..  .   .
T Consensus        23 ~~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~~------------~~~v~~~~~D~~~~~~~~~~~~~~~~~~~   89 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEMEE------------IAGVRFIRCDIFKETIFDDIDRALREEGI   89 (191)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCCC------------CTTCEEEECCTTSSSHHHHHHHHHHHHTC
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHc-CCcEEEEecccccc------------CCCeEEEEccccCHHHHHHHHHHhhcccC
Confidence            568999999999999999988877 45999999998521            1138899999987653222111  1   1


Q ss_pred             CceeEEEeccchhhh-------cCCHHHHHHHHHHHhccccCCcEEEEEecChh
Q 025775          104 NQADLVCCFQHLQMC-------FETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (248)
Q Consensus       104 ~~fD~V~~~~~l~~~-------~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~  150 (248)
                      ++||+|+|.......       ....+....+++.+.++|||||.|++.+..+.
T Consensus        90 ~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~  143 (191)
T 3dou_A           90 EKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGD  143 (191)
T ss_dssp             SSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECST
T ss_pred             CcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCC
Confidence            489999996533210       01122346788999999999999998866553

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.38  E-value=1.4e-12  Score=108.91  Aligned_cols=108  Identities=13%  Similarity=0.054  Sum_probs=85.8

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc-C-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~-~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      ..++.+|||+|||+|..+..++.. + ..+++++|+++.+++.|++.....+...++.+.++|+.+. +      .+++|
T Consensus       110 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~------~~~~~  182 (277)
T 1o54_A          110 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-F------DEKDV  182 (277)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-C------SCCSE
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-c------cCCcc
Confidence            457889999999999999888876 3 4699999999999999999877654334588999998553 2      35689


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHH
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~  152 (248)
                      |+|++...         ....+++++.++|+|||.+++..+....+
T Consensus       183 D~V~~~~~---------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~  219 (277)
T 1o54_A          183 DALFLDVP---------DPWNYIDKCWEALKGGGRFATVCPTTNQV  219 (277)
T ss_dssp             EEEEECCS---------CGGGTHHHHHHHEEEEEEEEEEESSHHHH
T ss_pred             CEEEECCc---------CHHHHHHHHHHHcCCCCEEEEEeCCHHHH
Confidence            99987431         13467899999999999999998876443

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.38  E-value=3e-12  Score=104.68  Aligned_cols=107  Identities=10%  Similarity=-0.016  Sum_probs=83.0

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHc-C-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc---cCC
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE---KAN  104 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~-~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~  104 (248)
                      .++.+|||||||+|..+..++.. + ..+++++|+++.+++.|++.+...+...++.++++|+.+  ..+.+..   ..+
T Consensus        69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~--~l~~l~~~~~~~~  146 (237)
T 3c3y_A           69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAML--ALDNLLQGQESEG  146 (237)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH--HHHHHHHSTTCTT
T ss_pred             hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH--HHHHHHhccCCCC
Confidence            36789999999999999888776 2 469999999999999999988776654569999999743  1111110   146


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +||+|++....       .....+++.+.++|+|||++++.
T Consensus       147 ~fD~I~~d~~~-------~~~~~~l~~~~~~L~pGG~lv~d  180 (237)
T 3c3y_A          147 SYDFGFVDADK-------PNYIKYHERLMKLVKVGGIVAYD  180 (237)
T ss_dssp             CEEEEEECSCG-------GGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CcCEEEECCch-------HHHHHHHHHHHHhcCCCeEEEEe
Confidence            89999876532       23577899999999999999987

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.37  E-value=9.9e-13  Score=120.59  Aligned_cols=110  Identities=17%  Similarity=0.121  Sum_probs=80.4

Q ss_pred             hcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775           28 YSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      .+..+.+|||||||+|.++..+++.+. +|+|+|+|+.+|+.|+.+....+ ..++.|.++++.+  +....  .+++||
T Consensus        63 ~~~~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~a~~~a~~~~-~~~~~~~~~~~~~--~~~~~--~~~~fD  136 (569)
T 4azs_A           63 ALGRPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINVCRALAEENP-DFAAEFRVGRIEE--VIAAL--EEGEFD  136 (569)
T ss_dssp             HHTSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTST-TSEEEEEECCHHH--HHHHC--CTTSCS
T ss_pred             hcCCCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHHHHHHHHhcC-CCceEEEECCHHH--Hhhhc--cCCCcc
Confidence            345678999999999999999988877 89999999999999999887654 2368999998743  21111  357899


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +|+|..+++|+..  +.....+..+.+.|+++|..++.
T Consensus       137 ~v~~~e~~ehv~~--~~~~~~~~~~~~tl~~~~~~~~~  172 (569)
T 4azs_A          137 LAIGLSVFHHIVH--LHGIDEVKRLLSRLADVTQAVIL  172 (569)
T ss_dssp             EEEEESCHHHHHH--HHCHHHHHHHHHHHHHHSSEEEE
T ss_pred             EEEECcchhcCCC--HHHHHHHHHHHHHhccccceeeE
Confidence            9999999998422  22222334466667776654444

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.37  E-value=3.5e-12  Score=111.14  Aligned_cols=127  Identities=14%  Similarity=0.082  Sum_probs=92.5

Q ss_pred             HHHHHhcCCCCeEEEEcCCCCccHhHHHHcCC-CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc
Q 025775           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE  101 (248)
Q Consensus        23 ~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~-~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  101 (248)
                      .++.....++.+|||+|||+|..+..++.... .+++|+|+|+.|++.|+++....+...++.+.++|+.+.+.      
T Consensus       209 ~l~~~~~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~------  282 (373)
T 3tm4_A          209 AMIELAELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQ------  282 (373)
T ss_dssp             HHHHHHTCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGG------
T ss_pred             HHHHhhcCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCc------
Confidence            34443356788999999999999988877643 48999999999999999998776644468999999876544      


Q ss_pred             cCCceeEEEeccchhhhc---CCHHH-HHHHHHHHhccccCCcEEEEEecChhHHHHHHH
Q 025775          102 KANQADLVCCFQHLQMCF---ETEER-ARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ  157 (248)
Q Consensus       102 ~~~~fD~V~~~~~l~~~~---~~~~~-~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~  157 (248)
                      .+++||+|++....+.-.   ..... ...+++.+.++|  ||.+++.+++...+.+.+.
T Consensus       283 ~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~~~~~~~~~~  340 (373)
T 3tm4_A          283 YVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITTEKKAIEEAIA  340 (373)
T ss_dssp             TCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEESCHHHHHHHHH
T ss_pred             ccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEECCHHHHHHHHH
Confidence            357899999965433211   11222 377888999988  6666666777766665554

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.37  E-value=9.9e-12  Score=98.97  Aligned_cols=105  Identities=14%  Similarity=0.080  Sum_probs=79.9

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      .++.+|||+|||+|..+..++..+..+++|+|+|+.+++.|+++....+.  ++.++++|+.+  +       +++||+|
T Consensus        48 ~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~--~-------~~~~D~v  116 (207)
T 1wy7_A           48 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSE--F-------NSRVDIV  116 (207)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGG--C-------CCCCSEE
T ss_pred             CCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECchHH--c-------CCCCCEE
Confidence            46889999999999999988887666899999999999999998766543  58999999854  2       3589999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      ++....|.  ........+++.+.+.+  ||.++..+++.
T Consensus       117 ~~~~p~~~--~~~~~~~~~l~~~~~~l--~~~~~~~~~~~  152 (207)
T 1wy7_A          117 IMNPPFGS--QRKHADRPFLLKAFEIS--DVVYSIHLAKP  152 (207)
T ss_dssp             EECCCCSS--SSTTTTHHHHHHHHHHC--SEEEEEEECCH
T ss_pred             EEcCCCcc--ccCCchHHHHHHHHHhc--CcEEEEEeCCc
Confidence            99876654  22223456788888887  66555554443

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.37  E-value=9.5e-13  Score=107.62  Aligned_cols=101  Identities=15%  Similarity=0.108  Sum_probs=76.0

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc-----CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCc
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~-----~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (248)
                      ++.+|||||||+|..+..++..     +.++|+|+|+|+.|++.|+..      ..++.++++|+.+.......  ...+
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~------~~~v~~~~gD~~~~~~l~~~--~~~~  152 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASD------MENITLHQGDCSDLTTFEHL--REMA  152 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGG------CTTEEEEECCSSCSGGGGGG--SSSC
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhcc------CCceEEEECcchhHHHHHhh--ccCC
Confidence            5679999999999999888775     346999999999999888621      12489999999764211111  2347


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHhc-cccCCcEEEEEe
Q 025775          106 ADLVCCFQHLQMCFETEERARRLLQNVSS-LLKPGGYFLGIT  146 (248)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~-~LkpgG~~i~~~  146 (248)
                      ||+|++... |.      ....++.++.+ +|+|||++++..
T Consensus       153 fD~I~~d~~-~~------~~~~~l~~~~r~~LkpGG~lv~~d  187 (236)
T 2bm8_A          153 HPLIFIDNA-HA------NTFNIMKWAVDHLLEEGDYFIIED  187 (236)
T ss_dssp             SSEEEEESS-CS------SHHHHHHHHHHHTCCTTCEEEECS
T ss_pred             CCEEEECCc-hH------hHHHHHHHHHHhhCCCCCEEEEEe
Confidence            999987664 31      35678999997 999999999863

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.36  E-value=3.2e-12  Score=103.42  Aligned_cols=107  Identities=13%  Similarity=0.106  Sum_probs=82.1

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHc-C-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccC--Cc
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA--NQ  105 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~-~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~  105 (248)
                      .++.+|||+|||+|..+..++.. + ..+++++|+++.+++.|++.+...+...++.++++|+.+.  ...+....  ++
T Consensus        68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~--~~~~~~~~~~~~  145 (229)
T 2avd_A           68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALET--LDELLAAGEAGT  145 (229)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHH--HHHHHHTTCTTC
T ss_pred             cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHH--HHHHHhcCCCCC
Confidence            46789999999999999888775 2 4699999999999999999887665444689999987431  11111111  68


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      ||+|++....       .....+++++.++|+|||++++.
T Consensus       146 ~D~v~~d~~~-------~~~~~~l~~~~~~L~pgG~lv~~  178 (229)
T 2avd_A          146 FDVAVVDADK-------ENCSAYYERCLQLLRPGGILAVL  178 (229)
T ss_dssp             EEEEEECSCS-------TTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccEEEECCCH-------HHHHHHHHHHHHHcCCCeEEEEE
Confidence            9999886532       23567899999999999999986

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.36  E-value=5e-12  Score=110.69  Aligned_cols=120  Identities=11%  Similarity=0.033  Sum_probs=86.6

Q ss_pred             HHHHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc
Q 025775           22 TALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE  101 (248)
Q Consensus        22 ~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  101 (248)
                      +.++..++.++.+|||+|||+|.++..++..+. .|+|+|+|+.+++.|++....++..  ..+.++|+.+.     +..
T Consensus       205 r~~l~~~~~~g~~VLDlg~GtG~~sl~~a~~ga-~V~avDis~~al~~a~~n~~~ng~~--~~~~~~D~~~~-----l~~  276 (393)
T 4dmg_A          205 RRLFEAMVRPGERVLDVYSYVGGFALRAARKGA-YALAVDKDLEALGVLDQAALRLGLR--VDIRHGEALPT-----LRG  276 (393)
T ss_dssp             HHHHHTTCCTTCEEEEESCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCC--CEEEESCHHHH-----HHT
T ss_pred             HHHHHHHhcCCCeEEEcccchhHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHHHhCCC--CcEEEccHHHH-----HHH
Confidence            344556667799999999999999999988776 5999999999999999988766533  34668887431     111


Q ss_pred             cCCceeEEEeccch-----hhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          102 KANQADLVCCFQHL-----QMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       102 ~~~~fD~V~~~~~l-----~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      ..+.||+|++....     ............++..+.++|+|||.+++...+.
T Consensus       277 ~~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~  329 (393)
T 4dmg_A          277 LEGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSY  329 (393)
T ss_dssp             CCCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             hcCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            13449999985421     0111123456789999999999999999664443

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.36  E-value=3.1e-12  Score=106.76  Aligned_cols=105  Identities=14%  Similarity=-0.006  Sum_probs=84.0

Q ss_pred             hcCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           28 YSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      .+.++.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.|++....++. .++.++++|+.+. .      ..++|
T Consensus       116 ~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l-~~~~~~~~d~~~~-~------~~~~~  187 (272)
T 3a27_A          116 ISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKL-NNVIPILADNRDV-E------LKDVA  187 (272)
T ss_dssp             SCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTC-SSEEEEESCGGGC-C------CTTCE
T ss_pred             hcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEECChHHc-C------ccCCc
Confidence            3568899999999999999998876 355999999999999999998876543 2478999998653 1      14689


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      |+|++....        ....++..+.+.|+|||++++.+..
T Consensus       188 D~Vi~d~p~--------~~~~~l~~~~~~LkpgG~l~~s~~~  221 (272)
T 3a27_A          188 DRVIMGYVH--------KTHKFLDKTFEFLKDRGVIHYHETV  221 (272)
T ss_dssp             EEEEECCCS--------SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             eEEEECCcc--------cHHHHHHHHHHHcCCCCEEEEEEcC
Confidence            999887642        3456888899999999999988443

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.36  E-value=3e-12  Score=109.01  Aligned_cols=112  Identities=18%  Similarity=0.093  Sum_probs=82.7

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      ..++.+|||+|||+|..+..++..  +.++|+|+|+|+.+++.++++....+.. ++.++++|+.....      ..++|
T Consensus       116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~~~------~~~~f  188 (315)
T 1ixk_A          116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSLHIGE------LNVEF  188 (315)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGGGGGG------GCCCE
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-eEEEEECChhhccc------ccccC
Confidence            347889999999999999888765  3358999999999999999988765432 48899999855332      25689


Q ss_pred             eEEEeccc------hhhhc-----CCH-------HHHHHHHHHHhccccCCcEEEEEec
Q 025775          107 DLVCCFQH------LQMCF-----ETE-------ERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       107 D~V~~~~~------l~~~~-----~~~-------~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      |+|++...      ++..-     .+.       .....+++++.++|||||.+++++.
T Consensus       189 D~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stc  247 (315)
T 1ixk_A          189 DKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC  247 (315)
T ss_dssp             EEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             CEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence            99998421      21100     011       1236899999999999999998743

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.35  E-value=3.8e-12  Score=106.71  Aligned_cols=110  Identities=13%  Similarity=0.064  Sum_probs=81.5

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhc--C--------CCceEEEEEcCCCCCchhhh
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ--R--------KNFIAEFFEADPCAENFETQ   98 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~--~--------~~~~~~~~~~d~~~~~~~~~   98 (248)
                      .+++.+|||||||+|..+..++..+..+++++|+++.+++.|++.+ ..  +        ...++.++++|+.+     .
T Consensus        73 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~-----~  146 (281)
T 1mjf_A           73 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFE-----F  146 (281)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHH-----H
T ss_pred             CCCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHH-----H
Confidence            3467899999999999998888776569999999999999999877 22  1        12358999998632     1


Q ss_pred             hcccCCceeEEEeccchhhhcCCHHH--HHHHHHHHhccccCCcEEEEEec
Q 025775           99 MQEKANQADLVCCFQHLQMCFETEER--ARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus        99 ~~~~~~~fD~V~~~~~l~~~~~~~~~--~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      +.. +++||+|++....+.  .....  ..++++++.++|+|||++++...
T Consensus       147 l~~-~~~fD~Ii~d~~~~~--~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~  194 (281)
T 1mjf_A          147 IKN-NRGFDVIIADSTDPV--GPAKVLFSEEFYRYVYDALNNPGIYVTQAG  194 (281)
T ss_dssp             HHH-CCCEEEEEEECCCCC-------TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hcc-cCCeeEEEECCCCCC--CcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence            222 578999998654332  11222  27889999999999999998743

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.35  E-value=1.2e-12  Score=109.26  Aligned_cols=115  Identities=11%  Similarity=0.024  Sum_probs=82.7

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      .++.+|||+|||+|..+..++..  +..+|+|+|+++.+++.++++....+.. ++.++++|+.....  ......++||
T Consensus        82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~--~~~~~~~~fD  158 (274)
T 3ajd_A           82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-NTIIINADMRKYKD--YLLKNEIFFD  158 (274)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCHHHHHH--HHHHTTCCEE
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEeCChHhcch--hhhhccccCC
Confidence            47889999999999999888774  4369999999999999999988765532 58899999744221  1100256899


Q ss_pred             EEEeccchhh--hcC-----CH-------HHHHHHHHHHhccccCCcEEEEEec
Q 025775          108 LVCCFQHLQM--CFE-----TE-------ERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       108 ~V~~~~~l~~--~~~-----~~-------~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      +|++......  ++.     +.       .....+++++.++|||||.+++++.
T Consensus       159 ~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stc  212 (274)
T 3ajd_A          159 KILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTC  212 (274)
T ss_dssp             EEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             EEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEEC
Confidence            9998632110  000     01       2346889999999999999998754

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.35  E-value=7.2e-12  Score=109.97  Aligned_cols=118  Identities=14%  Similarity=0.079  Sum_probs=88.6

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCC-CceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK-NFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      .++.+|||+|||+|..+..++..+..+|+|+|+|+.+++.|++....++. ..++.++++|+.+.  ...+.....+||+
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~--~~~~~~~~~~fD~  296 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKL--LRTYRDRGEKFDV  296 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHH--HHHHHHTTCCEEE
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHH--HHHHHhcCCCCCE
Confidence            57889999999999999999887767999999999999999998876554 33689999998442  1111112468999


Q ss_pred             EEeccchh-----hhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          109 VCCFQHLQ-----MCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       109 V~~~~~l~-----~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      |++.....     ...........++.++.+.|+|||++++.+...
T Consensus       297 Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  342 (396)
T 3c0k_A          297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSG  342 (396)
T ss_dssp             EEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             EEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            99863211     111223557789999999999999999885544

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.35  E-value=3.8e-12  Score=110.69  Aligned_cols=97  Identities=19%  Similarity=0.117  Sum_probs=80.2

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      .+..+|||||||+|..+..++.. +..+++++|+ +.+++.|++.       .++.++++|+.+ ++      +. . |+
T Consensus       202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~------p~-~-D~  264 (368)
T 3reo_A          202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF-------SGVEHLGGDMFD-GV------PK-G-DA  264 (368)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT-CC------CC-C-SE
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc-------CCCEEEecCCCC-CC------CC-C-CE
Confidence            35689999999999999998876 3448999999 8888776532       248999999875 33      23 3 99


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      |++..++|+  .+.++...++++++++|+|||.+++.
T Consensus       265 v~~~~vlh~--~~~~~~~~~l~~~~~~L~pgG~l~i~  299 (368)
T 3reo_A          265 IFIKWICHD--WSDEHCLKLLKNCYAALPDHGKVIVA  299 (368)
T ss_dssp             EEEESCGGG--BCHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             EEEechhhc--CCHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            999999997  56778889999999999999999887

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.34  E-value=4.7e-12  Score=109.93  Aligned_cols=97  Identities=18%  Similarity=0.125  Sum_probs=80.8

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      .+..+|||||||+|..+..++.. +..+++++|+ +.+++.|++.       .++.++.+|+.+ ++      +.+  |+
T Consensus       200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~------p~~--D~  262 (364)
T 3p9c_A          200 EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF-------PGVTHVGGDMFK-EV------PSG--DT  262 (364)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT-CC------CCC--SE
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc-------CCeEEEeCCcCC-CC------CCC--CE
Confidence            46789999999999999988876 3448999999 8888776532       249999999876 43      233  99


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      |++..++|+  .+.++...++++++++|+|||.+++.
T Consensus       263 v~~~~vlh~--~~d~~~~~~L~~~~~~L~pgG~l~i~  297 (364)
T 3p9c_A          263 ILMKWILHD--WSDQHCATLLKNCYDALPAHGKVVLV  297 (364)
T ss_dssp             EEEESCGGG--SCHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             EEehHHhcc--CCHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            999999997  56788899999999999999999887

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.34  E-value=4.2e-12  Score=107.59  Aligned_cols=113  Identities=11%  Similarity=-0.005  Sum_probs=80.4

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHh--cCC-CceEEEEEcCCCCCchhhhhcccCCc
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWEN--QRK-NFIAEFFEADPCAENFETQMQEKANQ  105 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~--~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (248)
                      +++.+|||||||+|..+..++.. +..+++++|+++.+++.|++.+..  .+. ..+++++++|+.+     .++..+++
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~-----~l~~~~~~  168 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFE-----FMKQNQDA  168 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHH-----HHHTCSSC
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHH-----HHhhCCCC
Confidence            46789999999999999988876 346999999999999999987653  111 2358899998733     11123578


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      ||+|++....+..........++++++.++|+|||++++...
T Consensus       169 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  210 (304)
T 2o07_A          169 FDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE  210 (304)
T ss_dssp             EEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecC
Confidence            999998654332100011236789999999999999998853

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.34  E-value=4.5e-12  Score=99.96  Aligned_cols=110  Identities=20%  Similarity=0.109  Sum_probs=76.7

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc-CC---------CeEEEEeCChHHHHHHHHHHHhcCCCceEEEE-EcCCCCCchhh
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA-LI---------ANYIGIDVATSGIGEARDTWENQRKNFIAEFF-EADPCAENFET   97 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~-~~---------~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~-~~d~~~~~~~~   97 (248)
                      +.++.+|||+|||+|..+..++.. +.         .+++|+|+|+.+.         .   .++.++ ++|+.......
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~---------~---~~~~~~~~~d~~~~~~~~   87 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP---------L---EGATFLCPADVTDPRTSQ   87 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC---------C---TTCEEECSCCTTSHHHHH
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhccc---------C---CCCeEEEeccCCCHHHHH
Confidence            568899999999999999988876 43         6899999998420         0   127788 88886643211


Q ss_pred             hhc--ccCCceeEEEeccchhhhcCCHHH-------HHHHHHHHhccccCCcEEEEEecChh
Q 025775           98 QMQ--EKANQADLVCCFQHLQMCFETEER-------ARRLLQNVSSLLKPGGYFLGITPDSS  150 (248)
Q Consensus        98 ~~~--~~~~~fD~V~~~~~l~~~~~~~~~-------~~~~l~~~~~~LkpgG~~i~~~~~~~  150 (248)
                      .+.  -.+++||+|+|..+++.......+       ...+++++.++|+|||.+++......
T Consensus        88 ~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~  149 (196)
T 2nyu_A           88 RILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGS  149 (196)
T ss_dssp             HHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSG
T ss_pred             HHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCc
Confidence            110  023589999997655432111111       25889999999999999999866553

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.34  E-value=4e-12  Score=110.59  Aligned_cols=104  Identities=19%  Similarity=0.225  Sum_probs=83.4

Q ss_pred             HHHHHh--cCCCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhh
Q 025775           23 ALIKIY--SHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM   99 (248)
Q Consensus        23 ~li~~~--~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   99 (248)
                      .++..+  ..++.+|||||||+|..+..++... ..+++++|+ +.+++.|++.       .++.++++|+.+ ++    
T Consensus       199 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~----  265 (372)
T 1fp1_D          199 RMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL-------SGIEHVGGDMFA-SV----  265 (372)
T ss_dssp             HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT-CC----
T ss_pred             HHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc-------CCCEEEeCCccc-CC----
Confidence            344444  3467899999999999999888763 348899999 9999877642       138999999866 33    


Q ss_pred             cccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          100 QEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       100 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                         +. ||+|++..++|+  .+.+....++++++++|+|||.+++.
T Consensus       266 ---~~-~D~v~~~~~lh~--~~d~~~~~~l~~~~~~L~pgG~l~i~  305 (372)
T 1fp1_D          266 ---PQ-GDAMILKAVCHN--WSDEKCIEFLSNCHKALSPNGKVIIV  305 (372)
T ss_dssp             ---CC-EEEEEEESSGGG--SCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ---CC-CCEEEEeccccc--CCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence               23 999999999998  46666779999999999999999987

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.33  E-value=2.8e-12  Score=107.19  Aligned_cols=114  Identities=12%  Similarity=0.065  Sum_probs=83.0

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhc--CC-CceEEEEEcCCCCCchhhhhcccCCc
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ--RK-NFIAEFFEADPCAENFETQMQEKANQ  105 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~--~~-~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (248)
                      +++.+|||||||+|..+..++.. +..+++++|+++.+++.|++.+...  +. ..+++++++|+..  +   +....++
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~--~---l~~~~~~  148 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFM--H---IAKSENQ  148 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHH--H---HHTCCSC
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHH--H---HhhCCCC
Confidence            45789999999999999888876 4579999999999999999876431  11 2358999999743  1   2223578


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      ||+|++....+......-...++++.+.++|+|||++++...+
T Consensus       149 fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~  191 (275)
T 1iy9_A          149 YDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN  191 (275)
T ss_dssp             EEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred             eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            9999986543321000001257899999999999999998544

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.33  E-value=5e-12  Score=107.94  Aligned_cols=113  Identities=16%  Similarity=0.171  Sum_probs=83.1

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhc--CC-CceEEEEEcCCCCCchhhhhcccCC
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ--RK-NFIAEFFEADPCAENFETQMQEKAN  104 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~--~~-~~~~~~~~~d~~~~~~~~~~~~~~~  104 (248)
                      .+++.+|||||||+|..+..++.. +..+++++|+|+.+++.|++.+...  +. ..+++++++|+.+  +   ++..++
T Consensus       114 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~--~---l~~~~~  188 (321)
T 2pt6_A          114 SKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASK--F---LENVTN  188 (321)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHH--H---HHHCCS
T ss_pred             CCCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHH--H---HhhcCC
Confidence            346689999999999999888876 4569999999999999999886541  11 2358999999743  1   111357


Q ss_pred             ceeEEEeccchhhhcCCHHHH--HHHHHHHhccccCCcEEEEEecC
Q 025775          105 QADLVCCFQHLQMCFETEERA--RRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~--~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      +||+|++...-+.  ......  .++++++.++|+|||++++...+
T Consensus       189 ~fDvIi~d~~~p~--~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  232 (321)
T 2pt6_A          189 TYDVIIVDSSDPI--GPAETLFNQNFYEKIYNALKPNGYCVAQCES  232 (321)
T ss_dssp             CEEEEEEECCCSS--SGGGGGSSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             CceEEEECCcCCC--CcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            8999998653221  111112  68999999999999999998654

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.33  E-value=7.4e-12  Score=105.71  Aligned_cols=113  Identities=18%  Similarity=0.070  Sum_probs=80.8

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHh--cCC-CceEEEEEcCCCCCchhhhhcccCCc
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWEN--QRK-NFIAEFFEADPCAENFETQMQEKANQ  105 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~--~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (248)
                      +++.+|||||||+|..+..++.. +..+++++|+|+.+++.|++.+..  .+. ..++.++++|+..  +   +....++
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~--~---l~~~~~~  163 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAE--Y---VRKFKNE  163 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHH--H---GGGCSSC
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHH--H---HhhCCCC
Confidence            45689999999999999888876 456999999999999999987643  111 2358999999733  1   1113578


Q ss_pred             eeEEEeccchhhhcCCHH--HHHHHHHHHhccccCCcEEEEEecC
Q 025775          106 ADLVCCFQHLQMCFETEE--RARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       106 fD~V~~~~~l~~~~~~~~--~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      ||+|++...-++ .....  ...++++++.++|+|||++++...+
T Consensus       164 fD~Ii~d~~~~~-~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  207 (296)
T 1inl_A          164 FDVIIIDSTDPT-AGQGGHLFTEEFYQACYDALKEDGVFSAETED  207 (296)
T ss_dssp             EEEEEEEC-----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             ceEEEEcCCCcc-cCchhhhhHHHHHHHHHHhcCCCcEEEEEccC
Confidence            999998543221 01111  1268899999999999999998554

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.33  E-value=3.5e-13  Score=112.03  Aligned_cols=108  Identities=14%  Similarity=0.067  Sum_probs=74.7

Q ss_pred             hcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHH-HhcCCCceEEEE--EcCCCCCchhhhhcccCC
Q 025775           28 YSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTW-ENQRKNFIAEFF--EADPCAENFETQMQEKAN  104 (248)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~-~~~~~~~~~~~~--~~d~~~~~~~~~~~~~~~  104 (248)
                      .+.++.+|||||||+|.++..++..  ++|+|+|+++ |+..+++.. .......++.++  ++|+..  +      +++
T Consensus        71 ~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~--l------~~~  139 (265)
T 2oxt_A           71 YVELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHT--L------PVE  139 (265)
T ss_dssp             SCCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTT--S------CCC
T ss_pred             CCCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhH--C------CCC
Confidence            4568899999999999999888776  6899999999 543322110 000111147888  889865  2      257


Q ss_pred             ceeEEEeccchhhhcCCH--HHH--HHHHHHHhccccCCc--EEEEEecC
Q 025775          105 QADLVCCFQHLQMCFETE--ERA--RRLLQNVSSLLKPGG--YFLGITPD  148 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~--~~~--~~~l~~~~~~LkpgG--~~i~~~~~  148 (248)
                      +||+|+|.++ ++. ...  +..  ..++..+.++|+|||  .|++.+..
T Consensus       140 ~fD~V~sd~~-~~~-~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~  187 (265)
T 2oxt_A          140 RTDVIMCDVG-ESS-PKWSVESERTIKILELLEKWKVKNPSADFVVKVLC  187 (265)
T ss_dssp             CCSEEEECCC-CCC-SCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred             CCcEEEEeCc-ccC-CccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence            8999999876 431 121  111  138899999999999  99987643

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.32  E-value=4.4e-12  Score=105.81  Aligned_cols=106  Identities=14%  Similarity=0.029  Sum_probs=85.6

Q ss_pred             HHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCC
Q 025775           25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN  104 (248)
Q Consensus        25 i~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  104 (248)
                      +...+.+|.+|||+|||+|.++..++..+.++|+++|+|+.+++.+++....++...++.++++|+.+..       ..+
T Consensus       119 i~~~~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~-------~~~  191 (278)
T 3k6r_A          119 MAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-------GEN  191 (278)
T ss_dssp             HHHHCCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-------CCS
T ss_pred             HHHhcCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhc-------ccc
Confidence            4456778999999999999999988888777999999999999999998887776667999999986643       357


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      .||.|++..- +.       ...++..+.++|++||++.+.
T Consensus       192 ~~D~Vi~~~p-~~-------~~~~l~~a~~~lk~gG~ih~~  224 (278)
T 3k6r_A          192 IADRILMGYV-VR-------THEFIPKALSIAKDGAIIHYH  224 (278)
T ss_dssp             CEEEEEECCC-SS-------GGGGHHHHHHHEEEEEEEEEE
T ss_pred             CCCEEEECCC-Cc-------HHHHHHHHHHHcCCCCEEEEE
Confidence            8999987542 11       234666777899999998654

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.32  E-value=4.2e-12  Score=108.09  Aligned_cols=113  Identities=14%  Similarity=0.072  Sum_probs=83.1

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhc--C-C-CceEEEEEcCCCCCchhhhhcccC
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ--R-K-NFIAEFFEADPCAENFETQMQEKA  103 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~--~-~-~~~~~~~~~d~~~~~~~~~~~~~~  103 (248)
                      .+++.+|||||||+|..+..++.. +..+++++|+++.+++.|++.+...  + . ..++.++++|+.+  +   ++..+
T Consensus        75 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~--~---l~~~~  149 (314)
T 1uir_A           75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARA--Y---LERTE  149 (314)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHH--H---HHHCC
T ss_pred             CCCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHH--H---HHhcC
Confidence            346689999999999999888776 4569999999999999999876531  1 0 2358999999743  1   11136


Q ss_pred             CceeEEEeccchhhhc-CCHHH--HHHHHHHHhccccCCcEEEEEe
Q 025775          104 NQADLVCCFQHLQMCF-ETEER--ARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       104 ~~fD~V~~~~~l~~~~-~~~~~--~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      ++||+|++....+... .....  ..++++++.++|+|||++++..
T Consensus       150 ~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  195 (314)
T 1uir_A          150 ERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (314)
T ss_dssp             CCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence            7899999876544200 00111  3689999999999999999874

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.32  E-value=5.8e-12  Score=107.13  Aligned_cols=111  Identities=12%  Similarity=0.035  Sum_probs=79.2

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhc--CC-CceEEEEEcCCCCCchhhhhcccCC
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ--RK-NFIAEFFEADPCAENFETQMQEKAN  104 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~--~~-~~~~~~~~~d~~~~~~~~~~~~~~~  104 (248)
                      .+++.+|||||||+|..+..++.. +..+++++|+++.+++.|++.+...  +. ..++.++++|+.+     .+...++
T Consensus       106 ~~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~-----~l~~~~~  180 (314)
T 2b2c_A          106 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFE-----FLKNHKN  180 (314)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHH-----HHHHCTT
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHH-----HHHhcCC
Confidence            346689999999999999888776 3569999999999999999887532  11 2358899998733     1111357


Q ss_pred             ceeEEEeccchhhhcCCHHHH--HHHHHHHhccccCCcEEEEEe
Q 025775          105 QADLVCCFQHLQMCFETEERA--RRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~--~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      +||+|++...-+.  .....+  .++++++.++|+|||++++..
T Consensus       181 ~fD~Ii~d~~~~~--~~~~~l~t~~~l~~~~~~LkpgG~lv~~~  222 (314)
T 2b2c_A          181 EFDVIITDSSDPV--GPAESLFGQSYYELLRDALKEDGILSSQG  222 (314)
T ss_dssp             CEEEEEECCC---------------HHHHHHHHEEEEEEEEEEC
T ss_pred             CceEEEEcCCCCC--CcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence            8999998664332  112222  789999999999999999975

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.32  E-value=2.6e-12  Score=104.71  Aligned_cols=100  Identities=11%  Similarity=0.025  Sum_probs=66.5

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEE-EcCCCCCchhhhhcccCCceeEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFF-EADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      ++.+|||||||+|.++..++..+..+|+|+|+|+.|++.|+++...      +... ..++...... .+  ....+|.+
T Consensus        37 ~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~------~~~~~~~~~~~~~~~-~~--~~~~~d~~  107 (232)
T 3opn_A           37 NGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDER------VVVMEQFNFRNAVLA-DF--EQGRPSFT  107 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTT------EEEECSCCGGGCCGG-GC--CSCCCSEE
T ss_pred             CCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCcc------ccccccceEEEeCHh-Hc--CcCCCCEE
Confidence            5679999999999999999888766999999999999987764322      1111 1111110000 00  11124555


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      ++..++..       +..++.++.++|||||.+++.+
T Consensus       108 ~~D~v~~~-------l~~~l~~i~rvLkpgG~lv~~~  137 (232)
T 3opn_A          108 SIDVSFIS-------LDLILPPLYEILEKNGEVAALI  137 (232)
T ss_dssp             EECCSSSC-------GGGTHHHHHHHSCTTCEEEEEE
T ss_pred             EEEEEhhh-------HHHHHHHHHHhccCCCEEEEEE
Confidence            44443332       2678999999999999999874

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.31  E-value=5.9e-12  Score=105.63  Aligned_cols=112  Identities=15%  Similarity=0.178  Sum_probs=83.2

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcC---CCceEEEEEcCCCCCchhhhhcccCCc
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQEKANQ  105 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (248)
                      +++.+|||||||+|..+..++... ..+++++|+++.+++.|++.+...+   ...++.++++|+.+  +   +...+++
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~--~---l~~~~~~  151 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASK--F---LENVTNT  151 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHH--H---HHHCCSC
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHH--H---HHhCCCC
Confidence            467899999999999998887763 5699999999999999998865321   02358899999743  1   1113578


Q ss_pred             eeEEEeccchhhhcCCHHHH--HHHHHHHhccccCCcEEEEEecC
Q 025775          106 ADLVCCFQHLQMCFETEERA--RRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~--~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      ||+|++....+.  .....+  .++++++.++|+|||++++...+
T Consensus       152 fD~Ii~d~~~~~--~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~  194 (283)
T 2i7c_A          152 YDVIIVDSSDPI--GPAETLFNQNFYEKIYNALKPNGYCVAQCES  194 (283)
T ss_dssp             EEEEEEECCCTT--TGGGGGSSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             ceEEEEcCCCCC--CcchhhhHHHHHHHHHHhcCCCcEEEEECCC
Confidence            999998553332  112222  68999999999999999998543

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.31  E-value=2.8e-12  Score=105.61  Aligned_cols=114  Identities=10%  Similarity=0.040  Sum_probs=75.7

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhccc-CCceeE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK-ANQADL  108 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~fD~  108 (248)
                      ++.+|||+|||+|..+..++.. +..+++|+|+|+.|++.|+++....+...++.++++|+.+.-+. .+... +++||+
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~~~~~~fD~  143 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMD-ALKEESEIIYDF  143 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTT-TSTTCCSCCBSE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhh-hhhcccCCcccE
Confidence            5779999999999988887765 23599999999999999999887665444589999997552110 01101 258999


Q ss_pred             EEeccchhhhcCC-----------HHHHHHHHHHHhccccCCcEEEEE
Q 025775          109 VCCFQHLQMCFET-----------EERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       109 V~~~~~l~~~~~~-----------~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      |+|....+..-..           .+....++..+.++|||||.+.+.
T Consensus       144 i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~  191 (254)
T 2h00_A          144 CMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV  191 (254)
T ss_dssp             EEECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred             EEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence            9997544431100           012235678899999999987653

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.31  E-value=8.7e-12  Score=116.73  Aligned_cols=113  Identities=15%  Similarity=0.141  Sum_probs=88.8

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCC-ceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      ++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++....++.. .++.++++|+.+  +   +....++||+|
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~--~---l~~~~~~fD~I  613 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLA--W---LREANEQFDLI  613 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHH--H---HHHCCCCEEEE
T ss_pred             CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHH--H---HHhcCCCccEE
Confidence            68899999999999999888877778999999999999999988776643 358999999844  1   11135789999


Q ss_pred             Eeccchh-------hhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775          110 CCFQHLQ-------MCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       110 ~~~~~l~-------~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      ++..-..       ..+........++..+.++|+|||++++.+..
T Consensus       614 i~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~  659 (703)
T 3v97_A          614 FIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK  659 (703)
T ss_dssp             EECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             EECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            9854211       11233567788999999999999999988655

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.31  E-value=3.8e-13  Score=112.42  Aligned_cols=109  Identities=19%  Similarity=0.048  Sum_probs=74.4

Q ss_pred             hcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHH-HhcCCCceEEEE--EcCCCCCchhhhhcccCC
Q 025775           28 YSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTW-ENQRKNFIAEFF--EADPCAENFETQMQEKAN  104 (248)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~-~~~~~~~~~~~~--~~d~~~~~~~~~~~~~~~  104 (248)
                      .+.++.+|||||||+|.++..++..  ++|+|+|+++ |+..++++. .......++.++  ++|+..  +      +++
T Consensus        79 ~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~--l------~~~  147 (276)
T 2wa2_A           79 GVELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTK--M------EPF  147 (276)
T ss_dssp             SCCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGG--C------CCC
T ss_pred             CCCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhh--C------CCC
Confidence            3457899999999999999888776  5899999999 644332211 000111247888  888754  2      357


Q ss_pred             ceeEEEeccchhhhcCC-HHHH--HHHHHHHhccccCCc--EEEEEecC
Q 025775          105 QADLVCCFQHLQMCFET-EERA--RRLLQNVSSLLKPGG--YFLGITPD  148 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~-~~~~--~~~l~~~~~~LkpgG--~~i~~~~~  148 (248)
                      +||+|+|.++ ++.... .+..  ..++..+.++|+|||  .|++.+..
T Consensus       148 ~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~  195 (276)
T 2wa2_A          148 QADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN  195 (276)
T ss_dssp             CCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred             CcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence            8999999876 431111 1111  137899999999999  99887543

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.31  E-value=1.6e-11  Score=103.01  Aligned_cols=110  Identities=14%  Similarity=0.091  Sum_probs=79.3

Q ss_pred             HHHHHh-cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc
Q 025775           23 ALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE  101 (248)
Q Consensus        23 ~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  101 (248)
                      .+++.. ..++.+|||||||+|..+..++..+. +|+|+|+|+.|++.++++....+...++.++++|+.+.++      
T Consensus        19 ~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~------   91 (285)
T 1zq9_A           19 SIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL------   91 (285)
T ss_dssp             HHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC------
T ss_pred             HHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccc------
Confidence            344443 45788999999999999999988765 9999999999999999887644322358999999976544      


Q ss_pred             cCCceeEEEeccchhhhcCCHHHHHHHHH--------------HH--hccccCCcEEEE
Q 025775          102 KANQADLVCCFQHLQMCFETEERARRLLQ--------------NV--SSLLKPGGYFLG  144 (248)
Q Consensus       102 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~--------------~~--~~~LkpgG~~i~  144 (248)
                        .+||+|++....+.   ..+....+++              ++  +.+++|||.++.
T Consensus        92 --~~fD~vv~nlpy~~---~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y~  145 (285)
T 1zq9_A           92 --PFFDTCVANLPYQI---SSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLYC  145 (285)
T ss_dssp             --CCCSEEEEECCGGG---HHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTCS
T ss_pred             --hhhcEEEEecCccc---chHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCcccc
Confidence              37999999766554   1222223332              22  358899998753

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.30  E-value=2.6e-11  Score=105.59  Aligned_cols=106  Identities=9%  Similarity=-0.138  Sum_probs=82.8

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCC-CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC-CchhhhhcccCCceeE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-ENFETQMQEKANQADL  108 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~-~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~fD~  108 (248)
                      ++.+|||+| |+|..+..++..+. .+++|+|+|+.|++.|+++....+.. ++.++++|+.+ .+..     .+++||+
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~-----~~~~fD~  244 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPDY-----ALHKFDT  244 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCTT-----TSSCBSE
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchhh-----ccCCccE
Confidence            578999999 99999988877654 69999999999999999988766543 69999999876 2210     2458999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCc-EEEEEecC
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGG-YFLGITPD  148 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG-~~i~~~~~  148 (248)
                      |++...++.    . ....+++++.++|+||| .+++.+..
T Consensus       245 Vi~~~p~~~----~-~~~~~l~~~~~~LkpgG~~~~~~~~~  280 (373)
T 2qm3_A          245 FITDPPETL----E-AIRAFVGRGIATLKGPRCAGYFGITR  280 (373)
T ss_dssp             EEECCCSSH----H-HHHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred             EEECCCCch----H-HHHHHHHHHHHHcccCCeEEEEEEec
Confidence            999765443    1 25889999999999999 44555443

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.30  E-value=5.4e-12  Score=103.18  Aligned_cols=104  Identities=15%  Similarity=0.157  Sum_probs=84.0

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      .+..+|||||||+|-++..|+.. +..+|+++|+++.|++.++......+.  ...+.+.|.....+       ++++|+
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~--~~~~~v~D~~~~~p-------~~~~Dv  201 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNV--PHRTNVADLLEDRL-------DEPADV  201 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTC--CEEEEECCTTTSCC-------CSCCSE
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCC--CceEEEeeecccCC-------CCCcch
Confidence            55779999999999999988777 567999999999999999998877653  37788999866554       688999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      |++.-++|+  ...+.....+ ++...|+|+|+++-.
T Consensus       202 aL~lkti~~--Le~q~kg~g~-~ll~aL~~~~vvVSf  235 (281)
T 3lcv_B          202 TLLLKTLPC--LETQQRGSGW-EVIDIVNSPNIVVTF  235 (281)
T ss_dssp             EEETTCHHH--HHHHSTTHHH-HHHHHSSCSEEEEEE
T ss_pred             HHHHHHHHH--hhhhhhHHHH-HHHHHhCCCCEEEec
Confidence            999999997  2222233445 899999999998754

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.30  E-value=3.1e-12  Score=108.42  Aligned_cols=108  Identities=17%  Similarity=0.069  Sum_probs=74.2

Q ss_pred             hcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeC----ChHHHHHHHHHHHhcCCCceEEEEEc-CCCCCchhhhhccc
Q 025775           28 YSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDV----ATSGIGEARDTWENQRKNFIAEFFEA-DPCAENFETQMQEK  102 (248)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDi----s~~~l~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~  102 (248)
                      .+.++.+|||||||+|.++..++..  ++|+|+|+    ++.+++.+.  ....+ ...+.++++ |+...+        
T Consensus        79 ~~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~--~~~~~-~~~v~~~~~~D~~~l~--------  145 (305)
T 2p41_A           79 LVTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIP--MSTYG-WNLVRLQSGVDVFFIP--------  145 (305)
T ss_dssp             SSCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCC--CCSTT-GGGEEEECSCCTTTSC--------
T ss_pred             CCCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHH--hhhcC-CCCeEEEeccccccCC--------
Confidence            4567899999999999999888776  58999999    565442111  00000 124888888 875532        


Q ss_pred             CCceeEEEeccchh---hhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          103 ANQADLVCCFQHLQ---MCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       103 ~~~fD~V~~~~~l~---~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      ..+||+|+|..+.+   +... ......++..+.++|||||.|++.++..
T Consensus       146 ~~~fD~V~sd~~~~~g~~~~d-~~~~l~~L~~~~~~LkpGG~~v~kv~~~  194 (305)
T 2p41_A          146 PERCDTLLCDIGESSPNPTVE-AGRTLRVLNLVENWLSNNTQFCVKVLNP  194 (305)
T ss_dssp             CCCCSEEEECCCCCCSSHHHH-HHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred             cCCCCEEEECCccccCcchhh-HHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence            46899999977653   2111 1111257889999999999999987655

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.30  E-value=9e-12  Score=100.90  Aligned_cols=102  Identities=19%  Similarity=0.105  Sum_probs=80.4

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      .++.+|||||||+|-++..+.  +...|+|+|||+.|++.+++.....+  .+..+.++|....++       ++++|+|
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g--~~~~~~v~D~~~~~~-------~~~~Dvv  172 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKD--WDFTFALQDVLCAPP-------AEAGDLA  172 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTT--CEEEEEECCTTTSCC-------CCBCSEE
T ss_pred             CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcC--CCceEEEeecccCCC-------CCCcchH
Confidence            467899999999998888876  55699999999999999999876654  457899999877665       5799999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      ++.-++|++ + .+.....+ ++...|+++|+++-.
T Consensus       173 Lllk~lh~L-E-~q~~~~~~-~ll~aL~~~~vvVsf  205 (253)
T 3frh_A          173 LIFKLLPLL-E-REQAGSAM-ALLQSLNTPRMAVSF  205 (253)
T ss_dssp             EEESCHHHH-H-HHSTTHHH-HHHHHCBCSEEEEEE
T ss_pred             HHHHHHHHh-h-hhchhhHH-HHHHHhcCCCEEEEc
Confidence            999888872 2 22223333 788899999877643

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.29  E-value=6.6e-12  Score=109.72  Aligned_cols=115  Identities=13%  Similarity=0.085  Sum_probs=86.0

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      ++.+|||+|||+|..+..++.. ..+|+|+|+|+.+++.|++....++... +.++++|+.+.  ...+.....+||+|+
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~~-~~~~~~d~~~~--~~~~~~~~~~fD~Ii  284 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGN-VRVLEANAFDL--LRRLEKEGERFDLVV  284 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEESCHHHH--HHHHHHTTCCEEEEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCC-ceEEECCHHHH--HHHHHhcCCCeeEEE
Confidence            7889999999999999988877 5689999999999999999887665322 89999997442  111111256899999


Q ss_pred             eccchh-----hhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          111 CFQHLQ-----MCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       111 ~~~~l~-----~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      +.....     ...........++..+.++|+|||++++.+...
T Consensus       285 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  328 (382)
T 1wxx_A          285 LDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH  328 (382)
T ss_dssp             ECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            843210     011123557789999999999999999986554

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.29  E-value=6.9e-12  Score=108.30  Aligned_cols=99  Identities=15%  Similarity=0.094  Sum_probs=81.2

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      ..++.+|||||||+|..+..++.. +..+++++|+ +.+++.|++.       .++.++++|+.+ ++       + .||
T Consensus       186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~-------p-~~D  248 (352)
T 1fp2_A          186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS-------NNLTYVGGDMFT-SI-------P-NAD  248 (352)
T ss_dssp             HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB-------TTEEEEECCTTT-CC-------C-CCS
T ss_pred             cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC-------CCcEEEeccccC-CC-------C-Ccc
Confidence            346789999999999999988876 3448999999 9999877641       128999999865 33       2 399


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHhccccC---CcEEEEEe
Q 025775          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKP---GGYFLGIT  146 (248)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~~i~~~  146 (248)
                      +|++..++|+  .+.+....+++++.++|+|   ||.+++..
T Consensus       249 ~v~~~~~lh~--~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e  288 (352)
T 1fp2_A          249 AVLLKYILHN--WTDKDCLRILKKCKEAVTNDGKRGKVTIID  288 (352)
T ss_dssp             EEEEESCGGG--SCHHHHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred             EEEeehhhcc--CCHHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence            9999999998  4566677999999999999   99998873

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.29  E-value=5.4e-12  Score=108.20  Aligned_cols=112  Identities=14%  Similarity=0.075  Sum_probs=80.7

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhc--CC-CceEEEEEcCCCCCchhhhhcccCCc
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ--RK-NFIAEFFEADPCAENFETQMQEKANQ  105 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~--~~-~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (248)
                      +++.+|||||||+|..+..++.. +..+|+++|+|+.+++.|++.+...  +. ..++.++++|+.+  +....  .+++
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~--~l~~~--~~~~  194 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVA--FLKNA--AEGS  194 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHH--HHHTS--CTTC
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHH--HHHhc--cCCC
Confidence            46689999999999999888876 3469999999999999999876531  11 1358999999743  11101  2468


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      ||+|++....+...........+++++.++|+|||++++.
T Consensus       195 fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  234 (334)
T 1xj5_A          195 YDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ  234 (334)
T ss_dssp             EEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            9999986532210000011368999999999999999997

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.27  E-value=1.2e-11  Score=104.88  Aligned_cols=111  Identities=10%  Similarity=0.083  Sum_probs=80.4

Q ss_pred             CeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEe
Q 025775           33 VTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (248)
Q Consensus        33 ~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~  111 (248)
                      .+|||||||+|..+..++.. +..+++++|+++.+++.|++.+... ...++.++++|+.+  +....  .+++||+|++
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~-~~~rv~v~~~Da~~--~l~~~--~~~~fDvIi~  165 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIP-RAPRVKIRVDDARM--VAESF--TPASRDVIIR  165 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCC-CTTTEEEEESCHHH--HHHTC--CTTCEEEEEE
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhcccc-CCCceEEEECcHHH--HHhhc--cCCCCCEEEE
Confidence            49999999999999988873 4458999999999999999887532 12358999999743  11111  2578999998


Q ss_pred             ccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       112 ~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      ....+......-...++++.++++|+|||++++...+
T Consensus       166 D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~  202 (317)
T 3gjy_A          166 DVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGD  202 (317)
T ss_dssp             CCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEecC
Confidence            6543321100001268999999999999999988653

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.26  E-value=1.4e-12  Score=101.35  Aligned_cols=93  Identities=11%  Similarity=0.064  Sum_probs=72.9

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      +.++.+|||+|||+               +++|+|+.|++.|+++...     ++.+.++|+.+.++..   ..+++||+
T Consensus        10 ~~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~~-----~~~~~~~d~~~~~~~~---~~~~~fD~   66 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTGN-----EGRVSVENIKQLLQSA---HKESSFDI   66 (176)
T ss_dssp             CCTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTTT-----TSEEEEEEGGGGGGGC---CCSSCEEE
T ss_pred             CCCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhccc-----CcEEEEechhcCcccc---CCCCCEeE
Confidence            66899999999986               2399999999999988643     2788999986544310   03678999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      |+|..++|++.   ++...++++++++|||||.+++..|
T Consensus        67 V~~~~~l~~~~---~~~~~~l~~~~r~LkpgG~l~~~~~  102 (176)
T 2ld4_A           67 ILSGLVPGSTT---LHSAEILAEIARILRPGGCLFLKEP  102 (176)
T ss_dssp             EEECCSTTCCC---CCCHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEECChhhhcc---cCHHHHHHHHHHHCCCCEEEEEEcc
Confidence            99999999841   2247899999999999999999633

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.24  E-value=1.1e-11  Score=106.82  Aligned_cols=109  Identities=22%  Similarity=0.263  Sum_probs=83.5

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCC------CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCC
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALI------ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN  104 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~------~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  104 (248)
                      ++.+|||+|||+|.++..++....      .+++|+|+++.+++.|+......+.  ++.+.++|.....       ...
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~--~~~i~~~D~l~~~-------~~~  200 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLANL-------LVD  200 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSCC-------CCC
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC--CceEEECCCCCcc-------ccC
Confidence            567999999999999887765421      4899999999999999987765543  4789999986532       257


Q ss_pred             ceeEEEeccchhhhcCCHHH---------------HHHHHHHHhccccCCcEEEEEecCh
Q 025775          105 QADLVCCFQHLQMCFETEER---------------ARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~---------------~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      +||+|++...+++ +...+.               ...+++.+.+.|+|||.+++.+|++
T Consensus       201 ~fD~Ii~NPPfg~-~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~  259 (344)
T 2f8l_A          201 PVDVVISDLPVGY-YPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA  259 (344)
T ss_dssp             CEEEEEEECCCSE-ESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred             CccEEEECCCCCC-cCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECch
Confidence            8999999876554 222221               1268999999999999999998654

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.22  E-value=3.7e-11  Score=103.18  Aligned_cols=104  Identities=13%  Similarity=0.068  Sum_probs=81.9

Q ss_pred             HHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCc
Q 025775           26 KIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (248)
Q Consensus        26 ~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (248)
                      ...+.++.+|||+|||+|.++.. +. +..+|+|+|+|+.+++.|++....++...++.++++|+.+.         .++
T Consensus       190 ~~~~~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~---------~~~  258 (336)
T 2yx1_A          190 MKKVSLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREV---------DVK  258 (336)
T ss_dssp             HHHCCTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGC---------CCC
T ss_pred             HHhcCCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHh---------cCC
Confidence            34556889999999999999888 66 56699999999999999999887765434689999998442         168


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      ||+|++... ++       ...++..+.++|+|||.+++....
T Consensus       259 fD~Vi~dpP-~~-------~~~~l~~~~~~L~~gG~l~~~~~~  293 (336)
T 2yx1_A          259 GNRVIMNLP-KF-------AHKFIDKALDIVEEGGVIHYYTIG  293 (336)
T ss_dssp             EEEEEECCT-TT-------GGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             CcEEEECCc-Hh-------HHHHHHHHHHHcCCCCEEEEEEee
Confidence            999988532 11       236888899999999998886433

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.20  E-value=1.3e-10  Score=98.21  Aligned_cols=79  Identities=19%  Similarity=0.185  Sum_probs=59.6

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      ..++.+|||+|||+|..+..++..+ .+|+|+|+|+.+++.++++....+. .++.++++|+...++        .+||+
T Consensus        40 ~~~~~~VLDiG~G~G~lt~~La~~~-~~v~~vDi~~~~~~~a~~~~~~~~~-~~v~~~~~D~~~~~~--------~~~D~  109 (299)
T 2h1r_A           40 IKSSDIVLEIGCGTGNLTVKLLPLA-KKVITIDIDSRMISEVKKRCLYEGY-NNLEVYEGDAIKTVF--------PKFDV  109 (299)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHTTTS-SEEEEECSCHHHHHHHHHHHHHTTC-CCEEC----CCSSCC--------CCCSE
T ss_pred             CCCcCEEEEEcCcCcHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECchhhCCc--------ccCCE
Confidence            4578899999999999999987764 4999999999999999988764332 358899999876443        47999


Q ss_pred             EEeccchhh
Q 025775          109 VCCFQHLQM  117 (248)
Q Consensus       109 V~~~~~l~~  117 (248)
                      |++....+.
T Consensus       110 Vv~n~py~~  118 (299)
T 2h1r_A          110 CTANIPYKI  118 (299)
T ss_dssp             EEEECCGGG
T ss_pred             EEEcCCccc
Confidence            998765553

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.20  E-value=2.8e-11  Score=107.75  Aligned_cols=111  Identities=19%  Similarity=0.094  Sum_probs=81.6

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      .++.+|||+|||+|..+..++..  +.+.|+|+|+|+.+++.++++....+..  +.++++|+....  ..   ..++||
T Consensus       100 ~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~~l~--~~---~~~~FD  172 (464)
T 3m6w_A          100 KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPRALA--EA---FGTYFH  172 (464)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHHHHH--HH---HCSCEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHHHhh--hh---ccccCC
Confidence            47899999999999999888865  3358999999999999999988876643  788888874422  11   257899


Q ss_pred             EEEecc------chhhh-----cCC-------HHHHHHHHHHHhccccCCcEEEEEec
Q 025775          108 LVCCFQ------HLQMC-----FET-------EERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       108 ~V~~~~------~l~~~-----~~~-------~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      +|++..      .++.-     ..+       ......+++++.++|||||+++.++.
T Consensus       173 ~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTC  230 (464)
T 3m6w_A          173 RVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTC  230 (464)
T ss_dssp             EEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred             EEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            998521      11100     001       12237899999999999999998743

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.20  E-value=1.8e-10  Score=102.67  Aligned_cols=114  Identities=21%  Similarity=0.179  Sum_probs=82.3

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      ..++.+|||+|||+|..+..++..  +.+.++|+|+++.+++.++++....+. .++.++++|+.....  .+  .+++|
T Consensus       257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~-~~v~~~~~D~~~~~~--~~--~~~~f  331 (450)
T 2yxl_A          257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGI-KIVKPLVKDARKAPE--II--GEEVA  331 (450)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCTTCCSS--SS--CSSCE
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-CcEEEEEcChhhcch--hh--ccCCC
Confidence            347889999999999999888775  225999999999999999998876543 248899999876431  01  23689


Q ss_pred             eEEEec------cchhhh------c--CCH----HHHHHHHHHHhccccCCcEEEEEec
Q 025775          107 DLVCCF------QHLQMC------F--ETE----ERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       107 D~V~~~------~~l~~~------~--~~~----~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      |+|++.      ..++..      .  ...    .....+++++.++|||||.++.++.
T Consensus       332 D~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tc  390 (450)
T 2yxl_A          332 DKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTC  390 (450)
T ss_dssp             EEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred             CEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            999862      222210      0  000    1126789999999999999998744

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.19  E-value=4.6e-11  Score=103.35  Aligned_cols=97  Identities=16%  Similarity=0.135  Sum_probs=79.5

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      .+..+|||||||+|..+..++... ..+++++|+ +.+++.|++.       .++.++++|+.+ ++       + .||+
T Consensus       192 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~-------~-~~D~  254 (358)
T 1zg3_A          192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTGN-------ENLNFVGGDMFK-SI-------P-SADA  254 (358)
T ss_dssp             HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCCC-------SSEEEEECCTTT-CC-------C-CCSE
T ss_pred             cCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhcccC-------CCcEEEeCccCC-CC-------C-CceE
Confidence            366899999999999999988763 348999999 7888766531       138999999866 33       2 4999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccC---CcEEEEE
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKP---GGYFLGI  145 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~~i~~  145 (248)
                      |++..++|+  .+.+....+++++.++|+|   ||.+++.
T Consensus       255 v~~~~vlh~--~~d~~~~~~l~~~~~~L~p~~~gG~l~i~  292 (358)
T 1zg3_A          255 VLLKWVLHD--WNDEQSLKILKNSKEAISHKGKDGKVIII  292 (358)
T ss_dssp             EEEESCGGG--SCHHHHHHHHHHHHHHTGGGGGGCEEEEE
T ss_pred             EEEcccccC--CCHHHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence            999999998  4566677999999999999   9999886

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.17  E-value=8.8e-11  Score=105.28  Aligned_cols=111  Identities=12%  Similarity=0.026  Sum_probs=82.1

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      ++.+|||+|||+|..+..++..  +.+.|+|+|+|+.+++.++++....+. .++.++++|+......     .+++||+
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~-~nv~~~~~D~~~~~~~-----~~~~fD~  190 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGI-SNVALTHFDGRVFGAA-----VPEMFDA  190 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTC-CSEEEECCCSTTHHHH-----STTCEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCCHHHhhhh-----ccccCCE
Confidence            7889999999999999888875  346899999999999999998876543 2488999998663321     2568999


Q ss_pred             EEecc------chhhh-----cCCH-------HHHHHHHHHHhccccCCcEEEEEec
Q 025775          109 VCCFQ------HLQMC-----FETE-------ERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       109 V~~~~------~l~~~-----~~~~-------~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      |++..      .++..     ..+.       .....++.++.++|||||+++.++.
T Consensus       191 Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTc  247 (479)
T 2frx_A          191 ILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTC  247 (479)
T ss_dssp             EEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             EEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence            98731      12110     0111       1245789999999999999998754

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.16  E-value=3e-10  Score=100.45  Aligned_cols=110  Identities=21%  Similarity=0.093  Sum_probs=80.6

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      ..++.+|||+|||+|.++..++... .+|+|+|+|+.|++.|++....++..  +.|+++|+.+..        ..+||+
T Consensus       288 ~~~~~~VLDlgcG~G~~sl~la~~~-~~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~~~d~~~~~--------~~~fD~  356 (425)
T 2jjq_A          288 LVEGEKILDMYSGVGTFGIYLAKRG-FNVKGFDSNEFAIEMARRNVEINNVD--AEFEVASDREVS--------VKGFDT  356 (425)
T ss_dssp             HCCSSEEEEETCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTCC--EEEEECCTTTCC--------CTTCSE
T ss_pred             cCCCCEEEEeeccchHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChHHcC--------ccCCCE
Confidence            5678899999999999999887764 49999999999999999988766543  899999986632        227999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHH
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ  157 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~  157 (248)
                      |++...-..  .    ...+++.+. .|+|||++++++ +...+.+.+.
T Consensus       357 Vv~dPPr~g--~----~~~~~~~l~-~l~p~givyvsc-~p~tlarDl~  397 (425)
T 2jjq_A          357 VIVDPPRAG--L----HPRLVKRLN-REKPGVIVYVSC-NPETFARDVK  397 (425)
T ss_dssp             EEECCCTTC--S----CHHHHHHHH-HHCCSEEEEEES-CHHHHHHHHH
T ss_pred             EEEcCCccc--h----HHHHHHHHH-hcCCCcEEEEEC-ChHHHHhHHh
Confidence            988653211  1    123444444 489999998874 5555554443

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.16  E-value=1.9e-10  Score=101.95  Aligned_cols=111  Identities=14%  Similarity=0.105  Sum_probs=82.2

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCC-CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~-~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      .++.+|||+|||+|..+..++.... +.++|+|+++.+++.++++....+.  ++.++++|+.....  .+  .+++||+
T Consensus       245 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~--~~~~~~~D~~~~~~--~~--~~~~fD~  318 (429)
T 1sqg_A          245 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM--KATVKQGDGRYPSQ--WC--GEQQFDR  318 (429)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC--CCEEEECCTTCTHH--HH--TTCCEEE
T ss_pred             CCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC--CeEEEeCchhhchh--hc--ccCCCCE
Confidence            4788999999999999988887632 6999999999999999998876553  37889999876441  11  3468999


Q ss_pred             EEecc------chhhhc-----CCH-------HHHHHHHHHHhccccCCcEEEEEe
Q 025775          109 VCCFQ------HLQMCF-----ETE-------ERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       109 V~~~~------~l~~~~-----~~~-------~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      |++..      .++..-     .+.       .....+++++.++|||||.++.++
T Consensus       319 Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvyst  374 (429)
T 1sqg_A          319 ILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYAT  374 (429)
T ss_dssp             EEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             EEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            98621      221100     011       112588999999999999999875

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.15  E-value=6.5e-11  Score=98.16  Aligned_cols=100  Identities=10%  Similarity=-0.025  Sum_probs=76.1

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhc--C-CCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ--R-KNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~--~-~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      +.+.+|||||||+|..+..++..+ .+++++|+++.+++.|++.+...  + ...++.++.+|+..  +      . ++|
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~--~------~-~~f  140 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDL--D------I-KKY  140 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGS--C------C-CCE
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHH--H------H-hhC
Confidence            356799999999999988887776 89999999999999998765321  0 11248888888743  1      1 679


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      |+|++...     .+.    .+++.+.++|+|||++++...+
T Consensus       141 D~Ii~d~~-----dp~----~~~~~~~~~L~pgG~lv~~~~~  173 (262)
T 2cmg_A          141 DLIFCLQE-----PDI----HRIDGLKRMLKEDGVFISVAKH  173 (262)
T ss_dssp             EEEEESSC-----CCH----HHHHHHHTTEEEEEEEEEEEEC
T ss_pred             CEEEECCC-----ChH----HHHHHHHHhcCCCcEEEEEcCC
Confidence            99988631     222    3899999999999999987443

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.13  E-value=8.6e-11  Score=104.45  Aligned_cols=112  Identities=14%  Similarity=0.078  Sum_probs=81.1

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      .++.+|||+|||+|+.+..++..  +.+.|+++|+|+.+++.++++....+.. ++.+.++|+....  ..   .+++||
T Consensus       104 ~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~-nv~v~~~Da~~l~--~~---~~~~FD  177 (456)
T 3m4x_A          104 KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVS-NAIVTNHAPAELV--PH---FSGFFD  177 (456)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCS-SEEEECCCHHHHH--HH---HTTCEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhh--hh---ccccCC
Confidence            47899999999999999888765  3468999999999999999988766532 4788888874421  11   257899


Q ss_pred             EEEeccch--hhhcC-CH---------------HHHHHHHHHHhccccCCcEEEEEec
Q 025775          108 LVCCFQHL--QMCFE-TE---------------ERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       108 ~V~~~~~l--~~~~~-~~---------------~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      +|++..-.  ..++. ..               .....++.++.++|||||.++.++.
T Consensus       178 ~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC  235 (456)
T 3m4x_A          178 RIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTC  235 (456)
T ss_dssp             EEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEES
T ss_pred             EEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            99874310  00001 11               1234889999999999999998644

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.12  E-value=1.7e-10  Score=100.71  Aligned_cols=124  Identities=16%  Similarity=0.149  Sum_probs=88.7

Q ss_pred             HHHHHHHHh-cCCCCeEEEEcCCCCccHhHHHHcCC---------------------------------------CeEEE
Q 025775           20 AKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETALI---------------------------------------ANYIG   59 (248)
Q Consensus        20 ~~~~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~---------------------------------------~~v~g   59 (248)
                      +...++... ..++.+|||++||+|.++...+....                                       ..++|
T Consensus       183 lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G  262 (385)
T 3ldu_A          183 LAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYG  262 (385)
T ss_dssp             HHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEE
T ss_pred             HHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEE
Confidence            333444433 34788999999999998877654311                                       36999


Q ss_pred             EeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccC-
Q 025775           60 IDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKP-  138 (248)
Q Consensus        60 iDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp-  138 (248)
                      +|+++.|++.|+......+....+.+.++|+.+...       +.+||+|++.--...-....+.+..+...+.+.|++ 
T Consensus       263 vDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~-------~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~  335 (385)
T 3ldu_A          263 YDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKS-------EDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKL  335 (385)
T ss_dssp             EESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCC-------SCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTS
T ss_pred             EECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCc-------CCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhC
Confidence            999999999999988776654468999999866432       468999999654332112234566777777777766 


Q ss_pred             -CcEEEEEecChh
Q 025775          139 -GGYFLGITPDSS  150 (248)
Q Consensus       139 -gG~~i~~~~~~~  150 (248)
                       ||.+++.+++..
T Consensus       336 ~g~~~~iit~~~~  348 (385)
T 3ldu_A          336 KNWSYYLITSYED  348 (385)
T ss_dssp             BSCEEEEEESCTT
T ss_pred             CCCEEEEEECCHH
Confidence             888888888765

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.12  E-value=1.2e-09  Score=91.97  Aligned_cols=85  Identities=13%  Similarity=0.010  Sum_probs=67.3

Q ss_pred             HHHHHh-cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc
Q 025775           23 ALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE  101 (248)
Q Consensus        23 ~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  101 (248)
                      .+++.. ..++.+|||||||+|..+..++... .+|+|+|+++.+++.+++++....   ++.++++|+.+.++      
T Consensus        41 ~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~-~~V~aVEid~~li~~a~~~~~~~~---~v~vi~gD~l~~~~------  110 (295)
T 3gru_A           41 KAVESANLTKDDVVLEIGLGKGILTEELAKNA-KKVYVIEIDKSLEPYANKLKELYN---NIEIIWGDALKVDL------  110 (295)
T ss_dssp             HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCGGGHHHHHHHHHHCS---SEEEEESCTTTSCG------
T ss_pred             HHHHhcCCCCcCEEEEECCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHHhccCC---CeEEEECchhhCCc------
Confidence            334433 4578899999999999999998874 599999999999999999886432   48999999988666      


Q ss_pred             cCCceeEEEeccchhh
Q 025775          102 KANQADLVCCFQHLQM  117 (248)
Q Consensus       102 ~~~~fD~V~~~~~l~~  117 (248)
                      ...+||.|+++...+.
T Consensus       111 ~~~~fD~Iv~NlPy~i  126 (295)
T 3gru_A          111 NKLDFNKVVANLPYQI  126 (295)
T ss_dssp             GGSCCSEEEEECCGGG
T ss_pred             ccCCccEEEEeCcccc
Confidence            3457999998765443

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.11  E-value=6.5e-10  Score=96.94  Aligned_cols=124  Identities=12%  Similarity=0.062  Sum_probs=91.1

Q ss_pred             HHHHHHHHh-cCCCCeEEEEcCCCCccHhHHHHcCC---------------------------------------CeEEE
Q 025775           20 AKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETALI---------------------------------------ANYIG   59 (248)
Q Consensus        20 ~~~~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~---------------------------------------~~v~g   59 (248)
                      +...++... ..++..|||++||+|.++...+....                                       ..++|
T Consensus       182 LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~G  261 (384)
T 3ldg_A          182 MAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISG  261 (384)
T ss_dssp             HHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred             HHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEE
Confidence            333344333 35788999999999998876654311                                       35999


Q ss_pred             EeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccC-
Q 025775           60 IDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKP-  138 (248)
Q Consensus        60 iDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp-  138 (248)
                      +|+|+.|++.|++.....+....+.+.++|+.+...       ..+||+|++.--.+.-....+.+..+...+.+.|++ 
T Consensus       262 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~-------~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~  334 (384)
T 3ldg_A          262 FDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKT-------NKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPL  334 (384)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCC-------CCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTC
T ss_pred             EECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCc-------cCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhC
Confidence            999999999999988777655568999999866443       358999999743332234566777777777777765 


Q ss_pred             -CcEEEEEecChh
Q 025775          139 -GGYFLGITPDSS  150 (248)
Q Consensus       139 -gG~~i~~~~~~~  150 (248)
                       ||.+++.+++..
T Consensus       335 ~g~~~~iit~~~~  347 (384)
T 3ldg_A          335 KTWSQFILTNDTD  347 (384)
T ss_dssp             TTSEEEEEESCTT
T ss_pred             CCcEEEEEECCHH
Confidence             999999888765

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.11  E-value=1.2e-09  Score=96.83  Aligned_cols=114  Identities=17%  Similarity=0.139  Sum_probs=79.4

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      .++.+|||+|||+|.++..++.. ..+|+|+|+|+.+++.|++.....+.. ++.|+++|+.+...  .++...++||+|
T Consensus       285 ~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~f~~~d~~~~l~--~~~~~~~~fD~V  360 (433)
T 1uwv_A          285 QPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEEDVT--KQPWAKNGFDKV  360 (433)
T ss_dssp             CTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCTTSCCS--SSGGGTTCCSEE
T ss_pred             CCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEECCHHHHhh--hhhhhcCCCCEE
Confidence            46789999999999999999877 459999999999999999988665532 58999999876211  000134689999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHH
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~  156 (248)
                      ++.---..       ...+++.+.+ ++|+++++++ .+...+.+..
T Consensus       361 v~dPPr~g-------~~~~~~~l~~-~~p~~ivyvs-c~p~tlard~  398 (433)
T 1uwv_A          361 LLDPARAG-------AAGVMQQIIK-LEPIRIVYVS-CNPATLARDS  398 (433)
T ss_dssp             EECCCTTC-------CHHHHHHHHH-HCCSEEEEEE-SCHHHHHHHH
T ss_pred             EECCCCcc-------HHHHHHHHHh-cCCCeEEEEE-CChHHHHhhH
Confidence            88543221       1134444433 6898888775 3444444443

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.10  E-value=3e-10  Score=99.44  Aligned_cols=124  Identities=19%  Similarity=0.121  Sum_probs=87.1

Q ss_pred             HHHHHHHHh-cCCCCeEEEEcCCCCccHhHHHHcCC---------------------------------------CeEEE
Q 025775           20 AKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETALI---------------------------------------ANYIG   59 (248)
Q Consensus        20 ~~~~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~---------------------------------------~~v~g   59 (248)
                      +...++... ..++..|||++||+|.++...+....                                       ..++|
T Consensus       189 lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G  268 (393)
T 3k0b_A          189 MAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIG  268 (393)
T ss_dssp             HHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred             HHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEE
Confidence            333444433 34778999999999998876654311                                       35999


Q ss_pred             EeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccC-
Q 025775           60 IDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKP-  138 (248)
Q Consensus        60 iDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp-  138 (248)
                      +|+|+.|++.|+......+....+.+.++|+.+...       +.+||+|+++--...-....+.+..+...+.+.|++ 
T Consensus       269 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~-------~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~  341 (393)
T 3k0b_A          269 GDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQT-------EDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRM  341 (393)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCC-------CCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTC
T ss_pred             EECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCC-------CCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcC
Confidence            999999999999988776655568999999866443       458999999843221112234556666666666655 


Q ss_pred             -CcEEEEEecChh
Q 025775          139 -GGYFLGITPDSS  150 (248)
Q Consensus       139 -gG~~i~~~~~~~  150 (248)
                       ||.+++.+++..
T Consensus       342 ~g~~~~iit~~~~  354 (393)
T 3k0b_A          342 PTWSVYVLTSYEL  354 (393)
T ss_dssp             TTCEEEEEECCTT
T ss_pred             CCCEEEEEECCHH
Confidence             999888888765

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.08  E-value=2.4e-10  Score=100.71  Aligned_cols=110  Identities=18%  Similarity=0.222  Sum_probs=78.4

Q ss_pred             HHHHHhc-CCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhh
Q 025775           23 ALIKIYS-HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM   99 (248)
Q Consensus        23 ~li~~~~-~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   99 (248)
                      .+++... .++.+|||+|||+|.++..++..  ...+++|+|+++.+++.|      .    ++.++++|+.+..     
T Consensus        30 ~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a------~----~~~~~~~D~~~~~-----   94 (421)
T 2ih2_A           30 FMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP------P----WAEGILADFLLWE-----   94 (421)
T ss_dssp             HHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC------T----TEEEEESCGGGCC-----
T ss_pred             HHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC------C----CCcEEeCChhhcC-----
Confidence            3444333 35679999999999999888764  345999999999999877      1    3789999985532     


Q ss_pred             cccCCceeEEEeccchhhhcC--------CHH-----------------HHHHHHHHHhccccCCcEEEEEecCh
Q 025775          100 QEKANQADLVCCFQHLQMCFE--------TEE-----------------RARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       100 ~~~~~~fD~V~~~~~l~~~~~--------~~~-----------------~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                        ..++||+|+++--....-.        ..+                 ....+++.+.++|+|||.+++.+|+.
T Consensus        95 --~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~  167 (421)
T 2ih2_A           95 --PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT  167 (421)
T ss_dssp             --CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred             --ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChH
Confidence              2468999999521110000        011                 12367999999999999999998874

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.08  E-value=1.4e-10  Score=103.30  Aligned_cols=112  Identities=18%  Similarity=0.113  Sum_probs=81.7

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc--------------CCCeEEEEeCChHHHHHHHHHHHhcCCCc-eEEEEEcCCCCCch
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA--------------LIANYIGIDVATSGIGEARDTWENQRKNF-IAEFFEADPCAENF   95 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~--------------~~~~v~giDis~~~l~~a~~~~~~~~~~~-~~~~~~~d~~~~~~   95 (248)
                      ++.+|||+|||+|+++..++..              ....++|+|+++.+++.|+.....++... ...+.++|....+.
T Consensus       171 ~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~~  250 (445)
T 2okc_A          171 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEP  250 (445)
T ss_dssp             TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCC
T ss_pred             CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCcc
Confidence            5679999999999998777643              22479999999999999988765554321 46788999866443


Q ss_pred             hhhhcccCCceeEEEeccchhhhcCC-------------HHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775           96 ETQMQEKANQADLVCCFQHLQMCFET-------------EERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus        96 ~~~~~~~~~~fD~V~~~~~l~~~~~~-------------~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                             ..+||+|+++-.++.....             ......+++.+.+.|+|||.+++.+|++
T Consensus       251 -------~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~~  310 (445)
T 2okc_A          251 -------STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDN  310 (445)
T ss_dssp             -------SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             -------cCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECCc
Confidence                   3489999997544321110             0112478999999999999999988764

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.03  E-value=2.2e-09  Score=89.29  Aligned_cols=106  Identities=15%  Similarity=0.019  Sum_probs=75.1

Q ss_pred             HHHHHh-cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc
Q 025775           23 ALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE  101 (248)
Q Consensus        23 ~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  101 (248)
                      .+++.. ..++ +|||||||+|..+..++..+ .+|+|+|+++.|++.+++++...    ++.++++|+.+.++..    
T Consensus        38 ~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~-~~V~avEid~~~~~~l~~~~~~~----~v~vi~~D~l~~~~~~----  107 (271)
T 3fut_A           38 RIVEAARPFTG-PVFEVGPGLGALTRALLEAG-AEVTAIEKDLRLRPVLEETLSGL----PVRLVFQDALLYPWEE----  107 (271)
T ss_dssp             HHHHHHCCCCS-CEEEECCTTSHHHHHHHHTT-CCEEEEESCGGGHHHHHHHTTTS----SEEEEESCGGGSCGGG----
T ss_pred             HHHHhcCCCCC-eEEEEeCchHHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcCCC----CEEEEECChhhCChhh----
Confidence            344444 4577 99999999999999998876 58999999999999999887642    4899999997766521    


Q ss_pred             cCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       102 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                       ...+|.|+++.-.+   .+.+-+..+++.   ..-..+++++.
T Consensus       108 -~~~~~~iv~NlPy~---iss~il~~ll~~---~~~~~~~lm~Q  144 (271)
T 3fut_A          108 -VPQGSLLVANLPYH---IATPLVTRLLKT---GRFARLVFLVQ  144 (271)
T ss_dssp             -SCTTEEEEEEECSS---CCHHHHHHHHHH---CCEEEEEEEEE
T ss_pred             -ccCccEEEecCccc---ccHHHHHHHhcC---CCCCEEEEEee
Confidence             13578887765433   244555566654   11234555554

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.01  E-value=9.4e-10  Score=95.76  Aligned_cols=105  Identities=10%  Similarity=0.002  Sum_probs=79.4

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhc---------------CCCceEEEEEcCCCCCc
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ---------------RKNFIAEFFEADPCAEN   94 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~---------------~~~~~~~~~~~d~~~~~   94 (248)
                      ++.+|||+|||+|..+..++.. +..+|+++|+++.+++.+++..+.+               +.. ++.++++|+... 
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~-~i~v~~~Da~~~-  124 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEK-TIVINHDDANRL-  124 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSS-EEEEEESCHHHH-
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCC-ceEEEcCcHHHH-
Confidence            6889999999999999888876 5558999999999999999987765               432 388999997432 


Q ss_pred             hhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775           95 FETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus        95 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                          +.....+||+|++.- . +  .    ...++..+.+.|++||+++++..+.
T Consensus       125 ----~~~~~~~fD~I~lDP-~-~--~----~~~~l~~a~~~lk~gG~l~vt~td~  167 (378)
T 2dul_A          125 ----MAERHRYFHFIDLDP-F-G--S----PMEFLDTALRSAKRRGILGVTATDG  167 (378)
T ss_dssp             ----HHHSTTCEEEEEECC-S-S--C----CHHHHHHHHHHEEEEEEEEEEECCH
T ss_pred             ----HHhccCCCCEEEeCC-C-C--C----HHHHHHHHHHhcCCCCEEEEEeecc
Confidence                111245799998643 1 1  1    2467788888999999998886544

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.00  E-value=4.8e-09  Score=91.11  Aligned_cols=113  Identities=12%  Similarity=0.136  Sum_probs=79.3

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhccc--------
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK--------  102 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--------  102 (248)
                      .+.+|||+|||+|.++..++. ...+|+|+|+|+.+++.|++....++. .++.|+++|+.+  +...+...        
T Consensus       213 ~~~~vLDl~cG~G~~~l~la~-~~~~V~gvd~~~~ai~~a~~n~~~ng~-~~v~~~~~d~~~--~~~~~~~~~~~~~l~~  288 (369)
T 3bt7_A          213 SKGDLLELYCGNGNFSLALAR-NFDRVLATEIAKPSVAAAQYNIAANHI-DNVQIIRMAAEE--FTQAMNGVREFNRLQG  288 (369)
T ss_dssp             CCSEEEEESCTTSHHHHHHGG-GSSEEEEECCCHHHHHHHHHHHHHTTC-CSEEEECCCSHH--HHHHHSSCCCCTTGGG
T ss_pred             CCCEEEEccCCCCHHHHHHHh-cCCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECCHHH--HHHHHhhccccccccc
Confidence            467899999999999988766 445999999999999999988776553 358999999844  21111100        


Q ss_pred             ----CCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHH
Q 025775          103 ----ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ  157 (248)
Q Consensus       103 ----~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~  157 (248)
                          ..+||+|++.---.          .+..++.+.|+++|.++....+...+.+.+.
T Consensus       289 ~~~~~~~fD~Vv~dPPr~----------g~~~~~~~~l~~~g~ivyvsc~p~t~ard~~  337 (369)
T 3bt7_A          289 IDLKSYQCETIFVDPPRS----------GLDSETEKMVQAYPRILYISCNPETLCKNLE  337 (369)
T ss_dssp             SCGGGCCEEEEEECCCTT----------CCCHHHHHHHTTSSEEEEEESCHHHHHHHHH
T ss_pred             cccccCCCCEEEECcCcc----------ccHHHHHHHHhCCCEEEEEECCHHHHHHHHH
Confidence                13799998754211          1223445556688888888788777665554

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.99  E-value=5.4e-10  Score=93.70  Aligned_cols=97  Identities=15%  Similarity=0.010  Sum_probs=67.9

Q ss_pred             cCCCCeEEEEcCCC------CccHhHHHHc-C-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEE-EEcCCCCCchhhhh
Q 025775           29 SHPYVTVCDLYCGA------GVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEF-FEADPCAENFETQM   99 (248)
Q Consensus        29 ~~~~~~VLDlGcG~------G~~~~~l~~~-~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~   99 (248)
                      ++++.+|||+|||+      |.  ..++.. + .++|+|+|+|+. +         .    ++.+ +++|+.+.++    
T Consensus        61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v---------~----~v~~~i~gD~~~~~~----  120 (290)
T 2xyq_A           61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V---------S----DADSTLIGDCATVHT----  120 (290)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B---------C----SSSEEEESCGGGCCC----
T ss_pred             CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C---------C----CCEEEEECccccCCc----
Confidence            46889999999955      55  223332 3 359999999998 1         1    2678 9999866443    


Q ss_pred             cccCCceeEEEeccchhhh-------cCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775          100 QEKANQADLVCCFQHLQMC-------FETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       100 ~~~~~~fD~V~~~~~l~~~-------~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                         .++||+|++....+..       .........+++++.++|||||.|++....
T Consensus       121 ---~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~  173 (290)
T 2xyq_A          121 ---ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITE  173 (290)
T ss_dssp             ---SSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred             ---cCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence               3689999996532210       011234568999999999999999997543

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.99  E-value=4.1e-09  Score=86.88  Aligned_cols=81  Identities=12%  Similarity=0.149  Sum_probs=62.7

Q ss_pred             HHHHHh-cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc
Q 025775           23 ALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE  101 (248)
Q Consensus        23 ~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  101 (248)
                      .+++.. ..++.+|||||||+|..+..++... .+|+|+|+++.|++.+++++...   .++.++++|+.+.++....  
T Consensus        20 ~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~~~~--   93 (255)
T 3tqs_A           20 KIVSAIHPQKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAFLQKKYNQQ---KNITIYQNDALQFDFSSVK--   93 (255)
T ss_dssp             HHHHHHCCCTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHHHHHHHTTC---TTEEEEESCTTTCCGGGSC--
T ss_pred             HHHHhcCCCCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHhhC---CCcEEEEcchHhCCHHHhc--
Confidence            444444 4578899999999999999998776 59999999999999999987642   2489999999887764221  


Q ss_pred             cCCceeEE
Q 025775          102 KANQADLV  109 (248)
Q Consensus       102 ~~~~fD~V  109 (248)
                      ...+||+|
T Consensus        94 ~~~~~~vv  101 (255)
T 3tqs_A           94 TDKPLRVV  101 (255)
T ss_dssp             CSSCEEEE
T ss_pred             cCCCeEEE
Confidence            13578844

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.98  E-value=7.6e-11  Score=96.72  Aligned_cols=104  Identities=10%  Similarity=0.014  Sum_probs=71.3

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      ..++.+|||+|||+|..+..++..+ .+++|+|+|+.+++.|+++...   ..++.++++|+.+.++.     .+++| .
T Consensus        27 ~~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~~---~~~v~~~~~D~~~~~~~-----~~~~f-~   96 (245)
T 1yub_A           27 LKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLKL---NTRVTLIHQDILQFQFP-----NKQRY-K   96 (245)
T ss_dssp             CCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTTT---CSEEEECCSCCTTTTCC-----CSSEE-E
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhcc---CCceEEEECChhhcCcc-----cCCCc-E
Confidence            4478899999999999999998876 5999999999999988776542   23589999999775541     13578 4


Q ss_pred             EEeccchhhhcCCHHHHHHHH--------------HHHhccccCCcEEEEE
Q 025775          109 VCCFQHLQMCFETEERARRLL--------------QNVSSLLKPGGYFLGI  145 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l--------------~~~~~~LkpgG~~i~~  145 (248)
                      |+++...+   .+......++              +.+.++|+|||.+.+.
T Consensus        97 vv~n~Py~---~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~  144 (245)
T 1yub_A           97 IVGNIPYH---LSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLL  144 (245)
T ss_dssp             EEEECCSS---SCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHH
T ss_pred             EEEeCCcc---ccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhh
Confidence            55432211   1122222222              5577777888766554

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.95  E-value=3.5e-09  Score=92.41  Aligned_cols=107  Identities=16%  Similarity=0.171  Sum_probs=81.9

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCce-EEEEEcCCCCCchhhhhc-ccCCce
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFI-AEFFEADPCAENFETQMQ-EKANQA  106 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~-~~~~~f  106 (248)
                      ++.+|||++||+|..+..++..  +.++|+++|+++.+++.+++..+.++...+ +.++++|+.+  +   +. ...++|
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~--~---l~~~~~~~f  126 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANF--F---LRKEWGFGF  126 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHH--H---HHSCCSSCE
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHH--H---HHHhhCCCC
Confidence            5789999999999999888774  446899999999999999998887765445 8899999743  2   11 124579


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChh
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~  150 (248)
                      |+|++.-   +  ..   ...++..+.+.|+|||+++++..+..
T Consensus       127 D~V~lDP---~--g~---~~~~l~~a~~~Lk~gGll~~t~t~~~  162 (392)
T 3axs_A          127 DYVDLDP---F--GT---PVPFIESVALSMKRGGILSLTATDTA  162 (392)
T ss_dssp             EEEEECC---S--SC---CHHHHHHHHHHEEEEEEEEEEECCHH
T ss_pred             cEEEECC---C--cC---HHHHHHHHHHHhCCCCEEEEEecchh
Confidence            9998765   1  11   23477888889999999998865443

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.89  E-value=1.4e-08  Score=83.08  Aligned_cols=69  Identities=7%  Similarity=-0.001  Sum_probs=55.1

Q ss_pred             HHHHHh-cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCch
Q 025775           23 ALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF   95 (248)
Q Consensus        23 ~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~   95 (248)
                      .+++.. ..++.+|||||||+|..+..++..+ .+++|+|+|+.+++.++++....   .++.++++|+.+.++
T Consensus        21 ~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~---~~v~~~~~D~~~~~~   90 (244)
T 1qam_A           21 KIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQFKF   90 (244)
T ss_dssp             HHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGCCC
T ss_pred             HHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhccC---CCeEEEEChHHhCCc
Confidence            344433 3478899999999999999998876 59999999999999999887542   248999999876554

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.86  E-value=5.7e-09  Score=94.96  Aligned_cols=114  Identities=16%  Similarity=0.113  Sum_probs=80.8

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc----C---------------CCeEEEEeCChHHHHHHHHHHHhcCCCc----eEEEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA----L---------------IANYIGIDVATSGIGEARDTWENQRKNF----IAEFFE   87 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~----~---------------~~~v~giDis~~~l~~a~~~~~~~~~~~----~~~~~~   87 (248)
                      ++.+|||.|||+|+++..+...    .               ...++|+|+++.+++.|+....-++...    +..+.+
T Consensus       169 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~  248 (541)
T 2ar0_A          169 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRL  248 (541)
T ss_dssp             TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEE
T ss_pred             CCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEe
Confidence            5779999999999988766542    1               1379999999999999988765544321    156788


Q ss_pred             cCCCCCchhhhhcccCCceeEEEeccchhhhcCC----------HHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775           88 ADPCAENFETQMQEKANQADLVCCFQHLQMCFET----------EERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~----------~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      +|....+..     ...+||+|+++--+......          ...-..+++.+.+.|+|||++.+.+|++
T Consensus       249 gDtL~~~~~-----~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~  315 (541)
T 2ar0_A          249 GNTLGSDGE-----NLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDN  315 (541)
T ss_dssp             SCTTSHHHH-----TSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             CCCcccccc-----cccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecCc
Confidence            987553321     24689999996533321110          1112368999999999999999998866

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.85  E-value=3e-09  Score=87.85  Aligned_cols=83  Identities=16%  Similarity=0.073  Sum_probs=59.1

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCCh-------HHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccC
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVAT-------SGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA  103 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~-------~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  103 (248)
                      ++.+|||+|||+|.++..++..+. +|+|+|+|+       .+++.|++.....+...++.++++|+.+  +.+.+.+..
T Consensus        83 ~~~~VLDlgcG~G~~a~~lA~~g~-~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~--~l~~~~~~~  159 (258)
T 2r6z_A           83 AHPTVWDATAGLGRDSFVLASLGL-TVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAE--QMPALVKTQ  159 (258)
T ss_dssp             GCCCEEETTCTTCHHHHHHHHTTC-CEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHH--HHHHHHHHH
T ss_pred             CcCeEEEeeCccCHHHHHHHHhCC-EEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHH--HHHhhhccC
Confidence            568999999999999999888754 899999999       9999887755433222248999999743  211111001


Q ss_pred             CceeEEEeccchh
Q 025775          104 NQADLVCCFQHLQ  116 (248)
Q Consensus       104 ~~fD~V~~~~~l~  116 (248)
                      ++||+|++...++
T Consensus       160 ~~fD~V~~dP~~~  172 (258)
T 2r6z_A          160 GKPDIVYLDPMYP  172 (258)
T ss_dssp             CCCSEEEECCCC-
T ss_pred             CCccEEEECCCCC
Confidence            6899999865443

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.85  E-value=4.9e-08  Score=81.48  Aligned_cols=70  Identities=13%  Similarity=0.167  Sum_probs=55.6

Q ss_pred             HHHHHHh-cCCCCeEEEEcCCCCccHhHHHHcCC---CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh
Q 025775           22 TALIKIY-SHPYVTVCDLYCGAGVDVDKWETALI---ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE   96 (248)
Q Consensus        22 ~~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~---~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   96 (248)
                      ..+++.. ..++.+|||||||+|..+..++....   ++|+|+|+|+.|++.++++. .    .++.++++|+.+.++.
T Consensus        32 ~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-~----~~v~~i~~D~~~~~~~  105 (279)
T 3uzu_A           32 DAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-G----ELLELHAGDALTFDFG  105 (279)
T ss_dssp             HHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-G----GGEEEEESCGGGCCGG
T ss_pred             HHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-C----CCcEEEECChhcCChh
Confidence            3444444 45789999999999999999987644   23999999999999999884 2    2489999999887764

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.84  E-value=2.9e-08  Score=84.05  Aligned_cols=113  Identities=11%  Similarity=-0.025  Sum_probs=77.2

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      ..++.+|||+|||+|+.+..++..  +.+.|+++|+++.+++.++++....+. .++.++++|+.+....  .. ...+|
T Consensus       100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~-~~v~~~~~D~~~~~~~--~~-~~~~f  175 (309)
T 2b9e_A          100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV-SCCELAEEDFLAVSPS--DP-RYHEV  175 (309)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCGGGSCTT--CG-GGTTE
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCChHhcCcc--cc-ccCCC
Confidence            347899999999999999888774  446999999999999999998876553 2488999998653321  00 01579


Q ss_pred             eEEEecc------chhh---h-------cCCH----HHHHHHHHHHhccccCCcEEEEEe
Q 025775          107 DLVCCFQ------HLQM---C-------FETE----ERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       107 D~V~~~~------~l~~---~-------~~~~----~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      |.|++..      .+..   .       -...    ....+++..+.++|+ ||+++..+
T Consensus       176 D~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsT  234 (309)
T 2b9e_A          176 HYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYST  234 (309)
T ss_dssp             EEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEE
T ss_pred             CEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEEC
Confidence            9998731      1110   0       0011    112457888888886 89888764

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.81  E-value=9.9e-09  Score=84.38  Aligned_cols=115  Identities=17%  Similarity=0.162  Sum_probs=73.8

Q ss_pred             hcCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           28 YSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      .+.++.+|||||||+|+++...+.. +...+.|+|++-++......   ......++..++.++....+      .++++
T Consensus        71 ~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~---~~~~g~~ii~~~~~~dv~~l------~~~~~  141 (277)
T 3evf_A           71 YVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMN---VQSLGWNIITFKDKTDIHRL------EPVKC  141 (277)
T ss_dssp             SSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCC---CCBTTGGGEEEECSCCTTTS------CCCCC
T ss_pred             CCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccc---cCcCCCCeEEEeccceehhc------CCCCc
Confidence            4568889999999999999987665 55678899988543110000   00001124445665533333      46789


Q ss_pred             eEEEeccchhhhcCC-HHH--HHHHHHHHhccccCC-cEEEEEecC--hhHH
Q 025775          107 DLVCCFQHLQMCFET-EER--ARRLLQNVSSLLKPG-GYFLGITPD--SSTI  152 (248)
Q Consensus       107 D~V~~~~~l~~~~~~-~~~--~~~~l~~~~~~Lkpg-G~~i~~~~~--~~~~  152 (248)
                      |+|+|..+.+ .-.. .+.  .-.+++.+.++|+|| |.|++-+..  +...
T Consensus       142 DlVlsD~apn-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~~  192 (277)
T 3evf_A          142 DTLLCDIGES-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDV  192 (277)
T ss_dssp             SEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHH
T ss_pred             cEEEecCccC-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCccH
Confidence            9999988665 1111 121  123578889999999 999999888  5443

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.77  E-value=1.2e-08  Score=93.68  Aligned_cols=102  Identities=14%  Similarity=0.083  Sum_probs=74.0

Q ss_pred             CCeEEEEcCCCCccHhHHHHc---CCC--eEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           32 YVTVCDLYCGAGVDVDKWETA---LIA--NYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        32 ~~~VLDlGcG~G~~~~~l~~~---~~~--~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      +..|||+|||+|-+....+++   ...  +|++++-|+. ...|++....++...+++++++|+.+..+       +++.
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~-A~~a~~~v~~N~~~dkVtVI~gd~eev~L-------PEKV  429 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN-AVVTLENWQFEEWGSQVTVVSSDMREWVA-------PEKA  429 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH-HHHHHHHHHHHTTGGGEEEEESCTTTCCC-------SSCE
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH-HHHHHHHHHhccCCCeEEEEeCcceeccC-------Cccc
Confidence            457999999999875443332   222  6899999974 45677777777777889999999988765       6789


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEE
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i  143 (248)
                      |+|++-.. .++...+. +.+++....+.|||||+++
T Consensus       430 DIIVSEwM-G~fLl~E~-mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          430 DIIVSELL-GSFADNEL-SPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             EEEECCCC-BTTBGGGC-HHHHHHHHGGGEEEEEEEE
T ss_pred             CEEEEEcC-cccccccC-CHHHHHHHHHhcCCCcEEc
Confidence            99998542 22222233 3367888899999999874

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.77  E-value=3.5e-08  Score=81.05  Aligned_cols=69  Identities=12%  Similarity=0.042  Sum_probs=55.6

Q ss_pred             HHHHHh-cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh
Q 025775           23 ALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE   96 (248)
Q Consensus        23 ~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   96 (248)
                      .+++.. ..++.+|||||||+|..+..++..+..+++|+|+|+.+++.++++ ..    .++.++++|+.+.++.
T Consensus        22 ~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~-~~----~~v~~i~~D~~~~~~~   91 (249)
T 3ftd_A           22 KIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI-GD----ERLEVINEDASKFPFC   91 (249)
T ss_dssp             HHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS-CC----TTEEEECSCTTTCCGG
T ss_pred             HHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc-cC----CCeEEEEcchhhCChh
Confidence            344444 447889999999999999999887556999999999999999876 22    2489999999887763

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.76  E-value=3.7e-08  Score=83.04  Aligned_cols=81  Identities=14%  Similarity=0.069  Sum_probs=61.9

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc-cCCce
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQA  106 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~f  106 (248)
                      ..++.+|||+|||+|+++..++... ..+|+|+|+|+.|++.|+++....+  .++.++++|+...+  ..+.. ...+|
T Consensus        24 ~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~~l~--~~l~~~g~~~~   99 (301)
T 1m6y_A           24 PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREAD--FLLKTLGIEKV   99 (301)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHH--HHHHHTTCSCE
T ss_pred             CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHHHHH--HHHHhcCCCCC
Confidence            4578899999999999999888763 4699999999999999999876543  35899999975532  11111 11579


Q ss_pred             eEEEecc
Q 025775          107 DLVCCFQ  113 (248)
Q Consensus       107 D~V~~~~  113 (248)
                      |.|++..
T Consensus       100 D~Vl~D~  106 (301)
T 1m6y_A          100 DGILMDL  106 (301)
T ss_dssp             EEEEEEC
T ss_pred             CEEEEcC
Confidence            9998754

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.76  E-value=1.2e-08  Score=92.78  Aligned_cols=121  Identities=13%  Similarity=0.033  Sum_probs=79.9

Q ss_pred             HHHHhcCCCCeEEEEcCCCCccHhHHHHc--------C--------CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEE
Q 025775           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETA--------L--------IANYIGIDVATSGIGEARDTWENQRKNFIAEFFE   87 (248)
Q Consensus        24 li~~~~~~~~~VLDlGcG~G~~~~~l~~~--------~--------~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~   87 (248)
                      +++...+...+|||.|||+|+++......        .        ...++|+|+++.++..|+....-++...++.+.+
T Consensus       237 mv~ll~p~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~  316 (544)
T 3khk_A          237 IVEMLEPYKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKN  316 (544)
T ss_dssp             HHHHHCCCSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSS
T ss_pred             HHHHHhcCCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceec
Confidence            33333333349999999999988765321        0        2379999999999999998776555433333467


Q ss_pred             cCCCCCchhhhhcccCCceeEEEeccchhhh------------------------cCCH-HHHHHHHHHHhccccCCcEE
Q 025775           88 ADPCAENFETQMQEKANQADLVCCFQHLQMC------------------------FETE-ERARRLLQNVSSLLKPGGYF  142 (248)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~------------------------~~~~-~~~~~~l~~~~~~LkpgG~~  142 (248)
                      +|....+..     ...+||+|+++--....                        ..+. ..--.+++.+.+.|+|||.+
T Consensus       317 gDtL~~~~~-----~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~  391 (544)
T 3khk_A          317 ADSFLDDQH-----PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSM  391 (544)
T ss_dssp             CCTTTSCSC-----TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEE
T ss_pred             cchhcCccc-----ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceE
Confidence            776543321     35689999995322110                        0000 01125899999999999999


Q ss_pred             EEEecCh
Q 025775          143 LGITPDS  149 (248)
Q Consensus       143 i~~~~~~  149 (248)
                      .+.+|++
T Consensus       392 aiVlP~g  398 (544)
T 3khk_A          392 ALLLANG  398 (544)
T ss_dssp             EEEEETH
T ss_pred             EEEecch
Confidence            9998876

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.76  E-value=1.2e-07  Score=75.09  Aligned_cols=105  Identities=5%  Similarity=-0.125  Sum_probs=74.0

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCC--CceEEEEEcCCCCCc-------------
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK--NFIAEFFEADPCAEN-------------   94 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~--~~~~~~~~~d~~~~~-------------   94 (248)
                      .+..+|||+|||  ..+..++....++|+.+|.+++..+.|++.+...+.  ..++.++.+|+....             
T Consensus        29 ~~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~  106 (202)
T 3cvo_A           29 EEAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRS  106 (202)
T ss_dssp             HHCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGG
T ss_pred             hCCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhh
Confidence            356899999985  444455443346999999999999999998887765  568999999975431             


Q ss_pred             hhh---hhcc--cCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775           95 FET---QMQE--KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus        95 ~~~---~~~~--~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +..   .+..  ..++||+|++....         ....+..+.+.|+|||++++.
T Consensus       107 l~~~~~~i~~~~~~~~fDlIfIDg~k---------~~~~~~~~l~~l~~GG~Iv~D  153 (202)
T 3cvo_A          107 YPDYPLAVWRTEGFRHPDVVLVDGRF---------RVGCALATAFSITRPVTLLFD  153 (202)
T ss_dssp             TTHHHHGGGGCTTCCCCSEEEECSSS---------HHHHHHHHHHHCSSCEEEEET
T ss_pred             HHHHhhhhhccccCCCCCEEEEeCCC---------chhHHHHHHHhcCCCeEEEEe
Confidence            111   1101  13789999886631         124556677899999999764

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.75  E-value=4.4e-08  Score=91.70  Aligned_cols=127  Identities=14%  Similarity=0.054  Sum_probs=84.7

Q ss_pred             HHHHHHHh-cCCCCeEEEEcCCCCccHhHHHHc-------------------------------------------CCCe
Q 025775           21 KTALIKIY-SHPYVTVCDLYCGAGVDVDKWETA-------------------------------------------LIAN   56 (248)
Q Consensus        21 ~~~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~-------------------------------------------~~~~   56 (248)
                      ...++... .+++..|||++||+|.++...+..                                           ....
T Consensus       179 Aa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~  258 (703)
T 3v97_A          179 AAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSH  258 (703)
T ss_dssp             HHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCcc
Confidence            33444433 347789999999999988765532                                           1137


Q ss_pred             EEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHH---HHHHh
Q 025775           57 YIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRL---LQNVS  133 (248)
Q Consensus        57 v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~---l~~~~  133 (248)
                      ++|+|+++.|++.|+......+....+.+.++|+.+....    ...++||+|+++--...-+...+.+..+   +.++.
T Consensus       259 i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~----~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~l  334 (703)
T 3v97_A          259 FYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNP----LPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIM  334 (703)
T ss_dssp             EEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCS----CTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHH
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccc----cccCCCCEEEeCCCccccccchhHHHHHHHHHHHHH
Confidence            9999999999999999888777655689999998653210    0123899999973221111223334444   44455


Q ss_pred             ccccCCcEEEEEecChhH
Q 025775          134 SLLKPGGYFLGITPDSST  151 (248)
Q Consensus       134 ~~LkpgG~~i~~~~~~~~  151 (248)
                      +.+.|||.+++.+++..-
T Consensus       335 k~~~~g~~~~ilt~~~~l  352 (703)
T 3v97_A          335 KNQFGGWNLSLFSASPDL  352 (703)
T ss_dssp             HHHCTTCEEEEEESCHHH
T ss_pred             HhhCCCCeEEEEeCCHHH
Confidence            555689999999888654

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.74  E-value=2.1e-07  Score=80.58  Aligned_cols=111  Identities=14%  Similarity=0.098  Sum_probs=71.3

Q ss_pred             CCeEEEEcCCCCccHhHHHHc----------------CCCeEEEEeCChHHHHHHHHHHHhcCC-----------CceEE
Q 025775           32 YVTVCDLYCGAGVDVDKWETA----------------LIANYIGIDVATSGIGEARDTWENQRK-----------NFIAE   84 (248)
Q Consensus        32 ~~~VLDlGcG~G~~~~~l~~~----------------~~~~v~giDis~~~l~~a~~~~~~~~~-----------~~~~~   84 (248)
                      ..+|+|+|||+|..+..+...                +.-++..-|+..+.-...-+.++....           ..+..
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            478999999999988776321                122677778777765544333322100           00111


Q ss_pred             EEEcCCCC---CchhhhhcccCCceeEEEeccchhhhcCCH----------------------------------HHHHH
Q 025775           85 FFEADPCA---ENFETQMQEKANQADLVCCFQHLQMCFETE----------------------------------ERARR  127 (248)
Q Consensus        85 ~~~~d~~~---~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~----------------------------------~~~~~  127 (248)
                      |+.+...+   ..+      +++++|+|++..++||+-..+                                  .++..
T Consensus       133 f~~gvpgSFy~rlf------P~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~  206 (374)
T 3b5i_A          133 FVAGVPGSFYRRLF------PARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAE  206 (374)
T ss_dssp             EEEEEESCTTSCCS------CTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEecChhhhcccC------CCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHH
Confidence            22222211   112      578999999999999953211                                  26778


Q ss_pred             HHHHHhccccCCcEEEEEecC
Q 025775          128 LLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       128 ~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      +++..++.|+|||.+++++..
T Consensus       207 fL~~ra~eL~pGG~mvl~~~g  227 (374)
T 3b5i_A          207 FLRARAAEVKRGGAMFLVCLG  227 (374)
T ss_dssp             HHHHHHHHEEEEEEEEEEEEE
T ss_pred             HHHHHHHHhCCCCEEEEEEec
Confidence            899999999999999999653

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.71  E-value=1.2e-07  Score=86.05  Aligned_cols=116  Identities=18%  Similarity=0.107  Sum_probs=82.3

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc----CCCeEEEEeCChHHHHHHHHHHHhcCCC-ceEEEEEcCCCCCchhhhhcccCCc
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA----LIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKANQ  105 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~----~~~~v~giDis~~~l~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~  105 (248)
                      ++.+|||.|||+|+++......    +...++|+|+++.++..|+....-++.. .++.+.++|....+...   ....+
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~---~~~~~  297 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPT---QEPTN  297 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCC---SSCCC
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccc---ccccc
Confidence            6789999999999999887654    2458999999999999998876555432 24788999986652100   03578


Q ss_pred             eeEEEeccchhhhcC------------------CHHH-HHHHHHHHhcccc-CCcEEEEEecCh
Q 025775          106 ADLVCCFQHLQMCFE------------------TEER-ARRLLQNVSSLLK-PGGYFLGITPDS  149 (248)
Q Consensus       106 fD~V~~~~~l~~~~~------------------~~~~-~~~~l~~~~~~Lk-pgG~~i~~~~~~  149 (248)
                      ||+|+++--....+.                  +... --.+++.+.+.|+ |||++.+.+|++
T Consensus       298 fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g  361 (542)
T 3lkd_A          298 FDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHG  361 (542)
T ss_dssp             BSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETH
T ss_pred             ccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecch
Confidence            999998632110000                  0000 1248999999999 999999998876

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.68  E-value=2.1e-08  Score=87.71  Aligned_cols=79  Identities=16%  Similarity=0.060  Sum_probs=61.1

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhc--CCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ--RKNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      +.++.+|||+|||+|..+..++..+ .+|+|+|+|+.|++.|+......  +. .++.++++|+.+. + ...  ...+|
T Consensus        91 l~~g~~VLDLgcG~G~~al~LA~~g-~~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~~-L-~~~--~~~~f  164 (410)
T 3ll7_A           91 IREGTKVVDLTGGLGIDFIALMSKA-SQGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDFKEY-L-PLI--KTFHP  164 (410)
T ss_dssp             SCTTCEEEESSCSSSHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCGGGS-H-HHH--HHHCC
T ss_pred             cCCCCEEEEeCCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcHHHh-h-hhc--cCCCc
Confidence            3458999999999999988887665 49999999999999999988755  43 4699999998552 1 111  13579


Q ss_pred             eEEEecc
Q 025775          107 DLVCCFQ  113 (248)
Q Consensus       107 D~V~~~~  113 (248)
                      |+|++.-
T Consensus       165 DvV~lDP  171 (410)
T 3ll7_A          165 DYIYVDP  171 (410)
T ss_dssp             SEEEECC
T ss_pred             eEEEECC
Confidence            9999853

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.67  E-value=4.5e-08  Score=80.53  Aligned_cols=83  Identities=8%  Similarity=-0.068  Sum_probs=58.3

Q ss_pred             HHHHh-cCCCCeEEEEcCCCCccHhHHHHcCCCe--EEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhc
Q 025775           24 LIKIY-SHPYVTVCDLYCGAGVDVDKWETALIAN--YIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ  100 (248)
Q Consensus        24 li~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~~~--v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  100 (248)
                      +++.. ..++.+|||||||+|..+. +.. . .+  |+|+|+++.|++.++++....   .++.++++|+...++.....
T Consensus        13 iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~-~~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~D~~~~~~~~~~~   86 (252)
T 1qyr_A           13 IVSAINPQKGQAMVEIGPGLAALTE-PVG-E-RLDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTFNFGELAE   86 (252)
T ss_dssp             HHHHHCCCTTCCEEEECCTTTTTHH-HHH-T-TCSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGCCHHHHHH
T ss_pred             HHHhcCCCCcCEEEEECCCCcHHHH-hhh-C-CCCeEEEEECCHHHHHHHHHHhccC---CceEEEECchhhCCHHHhhc
Confidence            34443 4578899999999999999 654 3 46  999999999999998876432   24899999997766532210


Q ss_pred             ccCCceeEEEecc
Q 025775          101 EKANQADLVCCFQ  113 (248)
Q Consensus       101 ~~~~~fD~V~~~~  113 (248)
                      . .+..|.|+++.
T Consensus        87 ~-~~~~~~vvsNl   98 (252)
T 1qyr_A           87 K-MGQPLRVFGNL   98 (252)
T ss_dssp             H-HTSCEEEEEEC
T ss_pred             c-cCCceEEEECC
Confidence            0 12346666544

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.63  E-value=3.7e-08  Score=81.12  Aligned_cols=116  Identities=17%  Similarity=0.127  Sum_probs=73.7

Q ss_pred             hcCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           28 YSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      ++.++.+|||||||+|+++...+.. +...+.|+|++..+...+..   ......++..+..++....+      ...++
T Consensus        87 ~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~---~~~~g~~ii~~~~~~dv~~l------~~~~~  157 (282)
T 3gcz_A           87 YVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIM---RTTLGWNLIRFKDKTDVFNM------EVIPG  157 (282)
T ss_dssp             SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC---CCBTTGGGEEEECSCCGGGS------CCCCC
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccc---cccCCCceEEeeCCcchhhc------CCCCc
Confidence            3568889999999999999987654 56689999998764322211   00011123334433321122      46789


Q ss_pred             eEEEeccchhhhcC-CHHH--HHHHHHHHhccccCC--cEEEEEecC--hhHHH
Q 025775          107 DLVCCFQHLQMCFE-TEER--ARRLLQNVSSLLKPG--GYFLGITPD--SSTIW  153 (248)
Q Consensus       107 D~V~~~~~l~~~~~-~~~~--~~~~l~~~~~~Lkpg--G~~i~~~~~--~~~~~  153 (248)
                      |+|+|.++.+ .=. ..+.  .-.+++-+..+|+||  |.|++-+..  +....
T Consensus       158 DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg~~~~  210 (282)
T 3gcz_A          158 DTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYTPLIM  210 (282)
T ss_dssp             SEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCCSHHHH
T ss_pred             CEEEecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCCCccHH
Confidence            9999988766 111 1122  223577888999999  999999888  54433

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.62  E-value=3.1e-07  Score=85.86  Aligned_cols=116  Identities=14%  Similarity=0.046  Sum_probs=75.1

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcC----CCeEEEEeCChHHHHHHHHHHHhcC--C--Cce-EEEEEcCCCCCchhhhhc
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETAL----IANYIGIDVATSGIGEARDTWENQR--K--NFI-AEFFEADPCAENFETQMQ  100 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~----~~~v~giDis~~~l~~a~~~~~~~~--~--~~~-~~~~~~d~~~~~~~~~~~  100 (248)
                      +++.+|||.|||+|.++..++...    ..+++|+|+++.+++.|+.+.....  .  ... ..+...|+......    
T Consensus       320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~----  395 (878)
T 3s1s_A          320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPE----  395 (878)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGG----
T ss_pred             CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhccccc----
Confidence            357899999999999998877642    2479999999999999954432211  0  111 23444444332111    


Q ss_pred             ccCCceeEEEeccchhhhcCCHH-------------------------HHHHHHHHHhccccCCcEEEEEecChh
Q 025775          101 EKANQADLVCCFQHLQMCFETEE-------------------------RARRLLQNVSSLLKPGGYFLGITPDSS  150 (248)
Q Consensus       101 ~~~~~fD~V~~~~~l~~~~~~~~-------------------------~~~~~l~~~~~~LkpgG~~i~~~~~~~  150 (248)
                       ...+||+|+++--.........                         ....+++.+.+.|+|||.+.+.+|++-
T Consensus       396 -~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~  469 (878)
T 3s1s_A          396 -DFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQY  469 (878)
T ss_dssp             -GGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHH
T ss_pred             -ccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHH
Confidence             2468999999643210001111                         133478889999999999999988873

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.59  E-value=7.8e-08  Score=88.54  Aligned_cols=108  Identities=16%  Similarity=0.044  Sum_probs=72.9

Q ss_pred             CCeEEEEcCCCCccHhHHHHc----C----------CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh
Q 025775           32 YVTVCDLYCGAGVDVDKWETA----L----------IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET   97 (248)
Q Consensus        32 ~~~VLDlGcG~G~~~~~l~~~----~----------~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   97 (248)
                      +..|||+|||+|-++...+.+    +          ..+|+++|.|+.++...+.+.. ++...+++++++|+.+..+..
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~  488 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIA  488 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccc
Confidence            458999999999875432111    1          2389999999988766655544 455567999999997654310


Q ss_pred             hhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEE
Q 025775           98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (248)
Q Consensus        98 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i  143 (248)
                      . .+..++.|+|++-..- + |...+...+++..+.+.|||||+++
T Consensus       489 ~-~~~~ekVDIIVSElmG-s-fl~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          489 K-DRGFEQPDIIVSELLG-S-FGDNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             H-HTTCCCCSEEEECCCB-T-TBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             c-cCCCCcccEEEEeccc-c-ccchhccHHHHHHHHHhCCCCcEEE
Confidence            0 0125789999986532 2 2223335567888889999999875

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.59  E-value=5.9e-07  Score=77.45  Aligned_cols=114  Identities=14%  Similarity=-0.025  Sum_probs=79.6

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcC-------CCceEEEEEcCCCCCchhhhhccc
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR-------KNFIAEFFEADPCAENFETQMQEK  102 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~-------~~~~~~~~~~d~~~~~~~~~~~~~  102 (248)
                      ++..+||=||-|.|..+..+++.+..+++.+||++.+++.|++.+....       ...+++++.+|...  +.......
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~--fl~~~~~~  281 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIP--VLKRYAKE  281 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHH--HHHHHHHH
T ss_pred             CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHH--HHHhhhhc
Confidence            4668999999999999998888777899999999999999998653210       11237888888733  22111123


Q ss_pred             CCceeEEEeccchhhh------cCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          103 ANQADLVCCFQHLQMC------FETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       103 ~~~fD~V~~~~~l~~~------~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      .++||+|+.-..-...      .....-..++++.+++.|+|||+++..
T Consensus       282 ~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q  330 (381)
T 3c6k_A          282 GREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ  330 (381)
T ss_dssp             TCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             cCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence            5689999875311000      001223478899999999999999876

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.58  E-value=3.2e-07  Score=79.60  Aligned_cols=112  Identities=14%  Similarity=0.058  Sum_probs=71.6

Q ss_pred             CCeEEEEcCCCCccHhHHHHc------------------CCCeEEEEeCC-----------hHHHHHHHHHHHhcCCCce
Q 025775           32 YVTVCDLYCGAGVDVDKWETA------------------LIANYIGIDVA-----------TSGIGEARDTWENQRKNFI   82 (248)
Q Consensus        32 ~~~VLDlGcG~G~~~~~l~~~------------------~~~~v~giDis-----------~~~l~~a~~~~~~~~~~~~   82 (248)
                      ..+|+|+||++|..+..+...                  +.-+|..-|+.           +.+.+..++.   .+...+
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~---~g~~~~  129 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKE---NGRKIG  129 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHH---TCCCTT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhh---ccCCCC
Confidence            578999999999988766543                  11267888877           3333332221   111112


Q ss_pred             EEEEEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCH-----------------------------------HHHHH
Q 025775           83 AEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETE-----------------------------------ERARR  127 (248)
Q Consensus        83 ~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~-----------------------------------~~~~~  127 (248)
                      ..|+.+...+  +...+. +.+++|+|++..++||+-..+                                   .++..
T Consensus       130 ~~f~~gvpgS--Fy~rlf-p~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~  206 (384)
T 2efj_A          130 SCLIGAMPGS--FYSRLF-PEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTT  206 (384)
T ss_dssp             SEEEEECCSC--TTSCCS-CTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEecchh--hhhccC-CCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHH
Confidence            3566665433  111000 578999999999999963221                                   23445


Q ss_pred             HHHHHhccccCCcEEEEEecCh
Q 025775          128 LLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       128 ~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      +|+...+.|+|||.+++++...
T Consensus       207 FL~~Ra~eL~pGG~mvl~~~gr  228 (384)
T 2efj_A          207 FLRIHSEELISRGRMLLTFICK  228 (384)
T ss_dssp             HHHHHHHHEEEEEEEEEEEECC
T ss_pred             HHHHHHHHhccCCeEEEEEecC
Confidence            6888899999999999996643

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=98.58  E-value=1.2e-07  Score=81.65  Aligned_cols=110  Identities=15%  Similarity=0.097  Sum_probs=77.7

Q ss_pred             CCeEEEEcCCCCccHhHHHHc-----------------CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC--
Q 025775           32 YVTVCDLYCGAGVDVDKWETA-----------------LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA--   92 (248)
Q Consensus        32 ~~~VLDlGcG~G~~~~~l~~~-----------------~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~--   92 (248)
                      ..+|+|+||++|..+..+...                 +.-+|..-|+..+......+.........+..|+.+...+  
T Consensus        52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy  131 (359)
T 1m6e_X           52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY  131 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred             ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence            467999999999888665432                 1127899999999888777665431100013455554332  


Q ss_pred             -CchhhhhcccCCceeEEEeccchhhhcCC-----------------------------HHHHHHHHHHHhccccCCcEE
Q 025775           93 -ENFETQMQEKANQADLVCCFQHLQMCFET-----------------------------EERARRLLQNVSSLLKPGGYF  142 (248)
Q Consensus        93 -~~~~~~~~~~~~~fD~V~~~~~l~~~~~~-----------------------------~~~~~~~l~~~~~~LkpgG~~  142 (248)
                       ..+      +.+++|+|+++.++||+-..                             ..++..+++...+.|+|||.+
T Consensus       132 ~rlf------p~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~m  205 (359)
T 1m6e_X          132 GRLF------PRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRM  205 (359)
T ss_dssp             SCCS------CTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEE
T ss_pred             hccC------CCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE
Confidence             222      57899999999999996321                             246778899999999999999


Q ss_pred             EEEec
Q 025775          143 LGITP  147 (248)
Q Consensus       143 i~~~~  147 (248)
                      ++++.
T Consensus       206 vl~~~  210 (359)
T 1m6e_X          206 VLTIL  210 (359)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99955

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.57  E-value=1.7e-07  Score=78.36  Aligned_cols=113  Identities=11%  Similarity=0.075  Sum_probs=81.8

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhc----CCCceEEEEEcCCCCCchhhhhcccC
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ----RKNFIAEFFEADPCAENFETQMQEKA  103 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~----~~~~~~~~~~~d~~~~~~~~~~~~~~  103 (248)
                      .+...+||=||-|.|..+..+++. +..+++.+||++.+++.+++.+...    -...+++++.+|...-     +....
T Consensus        81 ~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~-----l~~~~  155 (294)
T 3o4f_A           81 HGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNF-----VNQTS  155 (294)
T ss_dssp             SSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTT-----TSCSS
T ss_pred             CCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHH-----Hhhcc
Confidence            345689999999999999888876 4579999999999999999876431    1124689999998652     22346


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      ++||+|++-..=.......--..++++.+++.|+|||+++...
T Consensus       156 ~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~  198 (294)
T 3o4f_A          156 QTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN  198 (294)
T ss_dssp             CCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEec
Confidence            7899998753211000000013578999999999999999873

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=98.47  E-value=4.3e-07  Score=75.28  Aligned_cols=117  Identities=15%  Similarity=0.091  Sum_probs=72.8

Q ss_pred             HhcCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCc
Q 025775           27 IYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (248)
Q Consensus        27 ~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (248)
                      .++.++.+||||||++|+++..++.. +...|.|+|+...+...... .  .....++..+..++.-..+      .+++
T Consensus        77 ~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~--~~~~~~iv~~~~~~di~~l------~~~~  147 (300)
T 3eld_A           77 GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-M--QTLGWNIVKFKDKSNVFTM------PTEP  147 (300)
T ss_dssp             TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-C--CBTTGGGEEEECSCCTTTS------CCCC
T ss_pred             CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-c--cccCCceEEeecCceeeec------CCCC
Confidence            45668999999999999999999865 56689999997653211000 0  0000112223322211112      3578


Q ss_pred             eeEEEeccchhhhcC-CHH--HHHHHHHHHhccccCC-cEEEEEecC--hhHHH
Q 025775          106 ADLVCCFQHLQMCFE-TEE--RARRLLQNVSSLLKPG-GYFLGITPD--SSTIW  153 (248)
Q Consensus       106 fD~V~~~~~l~~~~~-~~~--~~~~~l~~~~~~Lkpg-G~~i~~~~~--~~~~~  153 (248)
                      +|+|+|..+.+ .-. ..+  ....++.-+..+|+|| |.|++-+..  +....
T Consensus       148 ~DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~yG~~~~  200 (300)
T 3eld_A          148 SDTLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPYHPDVI  200 (300)
T ss_dssp             CSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTTSHHHH
T ss_pred             cCEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccccCccHH
Confidence            99999987665 111 111  1234577888999999 999999888  64433

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.43  E-value=2.5e-07  Score=68.78  Aligned_cols=89  Identities=17%  Similarity=0.149  Sum_probs=61.3

Q ss_pred             cCCCCeEEEEcCCCC-ccHhHHHH-cCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           29 SHPYVTVCDLYCGAG-VDVDKWET-ALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G-~~~~~l~~-~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      ..++.+|||+|||.| ..+..++. .+. .|+++|+++.+++                +++.|+++..+..     -..|
T Consensus        33 ~~~~~rVlEVG~G~g~~vA~~La~~~g~-~V~atDInp~Av~----------------~v~dDiF~P~~~~-----Y~~~   90 (153)
T 2k4m_A           33 SGPGTRVVEVGAGRFLYVSDYIRKHSKV-DLVLTDIKPSHGG----------------IVRDDITSPRMEI-----YRGA   90 (153)
T ss_dssp             SCSSSEEEEETCTTCCHHHHHHHHHSCC-EEEEECSSCSSTT----------------EECCCSSSCCHHH-----HTTE
T ss_pred             CCCCCcEEEEccCCChHHHHHHHHhCCC-eEEEEECCccccc----------------eEEccCCCCcccc-----cCCc
Confidence            345689999999999 47788876 566 8999999998765                7889998866521     1479


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      |+|.+..       +..+++..+-++.+.  -|.-+++....
T Consensus        91 DLIYsir-------PP~El~~~i~~lA~~--v~adliI~pL~  123 (153)
T 2k4m_A           91 ALIYSIR-------PPAEIHSSLMRVADA--VGARLIIKPLT  123 (153)
T ss_dssp             EEEEEES-------CCTTTHHHHHHHHHH--HTCEEEEECBT
T ss_pred             CEEEEcC-------CCHHHHHHHHHHHHH--cCCCEEEEcCC
Confidence            9997654       333344444445443  35566666333

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=98.38  E-value=3.2e-07  Score=74.49  Aligned_cols=114  Identities=19%  Similarity=0.117  Sum_probs=69.4

Q ss_pred             hcCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHh--cCCCceEEEEEc-CCCCCchhhhhcccC
Q 025775           28 YSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWEN--QRKNFIAEFFEA-DPCAENFETQMQEKA  103 (248)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~--~~~~~~~~~~~~-d~~~~~~~~~~~~~~  103 (248)
                      +++|+.+|+||||++|+++...+.. +...|.|.++..+- . -.. ...  .+. .=+.|.++ |+++  +      .+
T Consensus        70 likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-~~P-~~~~~~Gv-~~i~~~~G~Df~~--~------~~  137 (269)
T 2px2_A           70 FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-EEP-MLMQSYGW-NIVTMKSGVDVFY--K------PS  137 (269)
T ss_dssp             SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-CCC-CCCCSTTG-GGEEEECSCCGGG--S------CC
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-cCC-CcccCCCc-eEEEeeccCCccC--C------CC
Confidence            6789999999999999999888765 23344555554331 0 000 000  010 00345556 8754  2      24


Q ss_pred             CceeEEEeccchh---hhcCCHHHHHHHHHHHhccccCCc-EEEEEecCh--hHHHH
Q 025775          104 NQADLVCCFQHLQ---MCFETEERARRLLQNVSSLLKPGG-YFLGITPDS--STIWA  154 (248)
Q Consensus       104 ~~fD~V~~~~~l~---~~~~~~~~~~~~l~~~~~~LkpgG-~~i~~~~~~--~~~~~  154 (248)
                      .++|+|+|-++-.   ...+....+. ++.-+.++|+||| .|++-+..+  ..+.+
T Consensus       138 ~~~DvVLSDMAPnSG~~~vD~~Rs~~-aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~  193 (269)
T 2px2_A          138 EISDTLLCDIGESSPSAEIEEQRTLR-ILEMVSDWLSRGPKEFCIKILCPYMPKVIE  193 (269)
T ss_dssp             CCCSEEEECCCCCCSCHHHHHHHHHH-HHHHHHHHHTTCCSEEEEEESCTTSHHHHH
T ss_pred             CCCCEEEeCCCCCCCccHHHHHHHHH-HHHHHHHHhhcCCcEEEEEECCCCchHHHH
Confidence            5899999977542   1112122233 6777789999999 898887766  55544

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.26  E-value=2.9e-06  Score=69.81  Aligned_cols=122  Identities=13%  Similarity=0.165  Sum_probs=72.6

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc-------CC------CeEEEEeCCh---HHHH-----------HHHHHHHh-------
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA-------LI------ANYIGIDVAT---SGIG-----------EARDTWEN-------   76 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~-------~~------~~v~giDis~---~~l~-----------~a~~~~~~-------   76 (248)
                      ++.+|||+|||+|..+..+...       .+      .+++++|..|   +++.           .|++....       
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            5579999999999887664331       22      3899999887   5544           33433322       


Q ss_pred             ------cCCCceEEEEEcCCCCCchhhhhcc-cCCceeEEEecc-chhhhcCCHH-HHHHHHHHHhccccCCcEEEEEec
Q 025775           77 ------QRKNFIAEFFEADPCAENFETQMQE-KANQADLVCCFQ-HLQMCFETEE-RARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus        77 ------~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~fD~V~~~~-~l~~~~~~~~-~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                            .....++.++.+|+.+.  .+.+.. ....||+|+... +...   ..+ ....+++.+.++|+|||+|+. ..
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~--l~~~~~~~~~~~D~iflD~fsp~~---~p~lw~~~~l~~l~~~L~pGG~l~t-ys  213 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINEL--ISQLDDSLNQKVDAWFLDGFAPAK---NPDMWTQNLFNAMARLARPGGTLAT-FT  213 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHH--GGGSCGGGTTCEEEEEECSSCTTT---CGGGCCHHHHHHHHHHEEEEEEEEE-SC
T ss_pred             hhheeccCCceEEEEEECcHHHH--HhhcccccCCeEEEEEECCCCccc---ChhhcCHHHHHHHHHHcCCCcEEEE-Ee
Confidence                  00113567888887441  111100 013799998743 2210   111 135789999999999999884 33


Q ss_pred             ChhHHHHHHHH
Q 025775          148 DSSTIWAKYQK  158 (248)
Q Consensus       148 ~~~~~~~~~~~  158 (248)
                      ....+.+.+.+
T Consensus       214 aa~~vrr~L~~  224 (257)
T 2qy6_A          214 SAGFVRRGLQE  224 (257)
T ss_dssp             CBHHHHHHHHH
T ss_pred             CCHHHHHHHHH
Confidence            34455555543

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.23  E-value=1.2e-06  Score=72.22  Aligned_cols=82  Identities=11%  Similarity=-0.047  Sum_probs=56.8

Q ss_pred             CCC--CeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhc-------C-CCceEEEEEcCCCCCchhhhh
Q 025775           30 HPY--VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ-------R-KNFIAEFFEADPCAENFETQM   99 (248)
Q Consensus        30 ~~~--~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~-------~-~~~~~~~~~~d~~~~~~~~~~   99 (248)
                      .++  .+|||++||+|.++..++..+. +|+++|+++.+.+.++...+..       + ...+++++++|+.+  +... 
T Consensus        85 ~~g~~~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~--~L~~-  160 (258)
T 2oyr_A           85 KGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT--ALTD-  160 (258)
T ss_dssp             BTTBCCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHH--HSTT-
T ss_pred             cCCCCCEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHH--HHHh-
Confidence            356  8999999999999999988766 7999999998765554432211       0 11248999999743  1111 


Q ss_pred             cccCCceeEEEeccchhh
Q 025775          100 QEKANQADLVCCFQHLQM  117 (248)
Q Consensus       100 ~~~~~~fD~V~~~~~l~~  117 (248)
                        ...+||+|++.-..+.
T Consensus       161 --~~~~fDvV~lDP~y~~  176 (258)
T 2oyr_A          161 --ITPRPQVVYLDPMFPH  176 (258)
T ss_dssp             --CSSCCSEEEECCCCCC
T ss_pred             --CcccCCEEEEcCCCCC
Confidence              1347999998765543

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.22  E-value=6.2e-06  Score=68.19  Aligned_cols=75  Identities=11%  Similarity=0.065  Sum_probs=58.4

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc-cCCcee
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQAD  107 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~fD  107 (248)
                      ..++..++|.+||.|+++..++.. .++|+|+|.++.+++.|++ +..    .++.+++++..+  +...+.. ...++|
T Consensus        20 ~~~gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~--l~~~L~~~g~~~vD   91 (285)
T 1wg8_A           20 VRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRH--LKRHLAALGVERVD   91 (285)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGG--HHHHHHHTTCSCEE
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcch--HHHHHHHcCCCCcC
Confidence            457899999999999999999887 4599999999999999988 644    248999999855  3222221 125799


Q ss_pred             EEEe
Q 025775          108 LVCC  111 (248)
Q Consensus       108 ~V~~  111 (248)
                      .|++
T Consensus        92 gIL~   95 (285)
T 1wg8_A           92 GILA   95 (285)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8876

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.22  E-value=2.9e-05  Score=64.58  Aligned_cols=106  Identities=12%  Similarity=-0.023  Sum_probs=76.4

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc------CCCeEEEEeCChH--------------------------HHHHHHHHHHhcC
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA------LIANYIGIDVATS--------------------------GIGEARDTWENQR   78 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~------~~~~v~giDis~~--------------------------~l~~a~~~~~~~~   78 (248)
                      ...+|||+|+.+|..+..++..      ..++++++|....                          .++.+++.++..+
T Consensus       106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g  185 (282)
T 2wk1_A          106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD  185 (282)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred             CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence            4678999999999988776543      2468999996421                          4667777777665


Q ss_pred             C-CceEEEEEcCCCCCchhhhhcc-cCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775           79 K-NFIAEFFEADPCAENFETQMQE-KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus        79 ~-~~~~~~~~~d~~~~~~~~~~~~-~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      . ..++.++.+|+.+     .++. ..++||+|.+-...      -+.....++.+...|+|||++++.-.
T Consensus       186 l~~~~I~li~Gda~e-----tL~~~~~~~~d~vfIDaD~------y~~~~~~Le~~~p~L~pGGiIv~DD~  245 (282)
T 2wk1_A          186 LLDEQVRFLPGWFKD-----TLPTAPIDTLAVLRMDGDL------YESTWDTLTNLYPKVSVGGYVIVDDY  245 (282)
T ss_dssp             CCSTTEEEEESCHHH-----HSTTCCCCCEEEEEECCCS------HHHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred             CCcCceEEEEeCHHH-----HHhhCCCCCEEEEEEcCCc------cccHHHHHHHHHhhcCCCEEEEEcCC
Confidence            4 2569999999733     1111 24689999876642      23356789999999999999998743

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.19  E-value=1.1e-05  Score=69.27  Aligned_cols=97  Identities=7%  Similarity=-0.105  Sum_probs=65.8

Q ss_pred             HhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           27 IYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        27 ~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      ..+.+|.+||||||++|+++..+...+. .|+|+|+.+-. .    .....   .++.++++|......      ...++
T Consensus       207 ~~l~~G~~vlDLGAaPGGWT~~l~~rg~-~V~aVD~~~l~-~----~l~~~---~~V~~~~~d~~~~~~------~~~~~  271 (375)
T 4auk_A          207 ERLANGMWAVDLGACPGGWTYQLVKRNM-WVYSVDNGPMA-Q----SLMDT---GQVTWLREDGFKFRP------TRSNI  271 (375)
T ss_dssp             HHSCTTCEEEEETCTTCHHHHHHHHTTC-EEEEECSSCCC-H----HHHTT---TCEEEECSCTTTCCC------CSSCE
T ss_pred             ccCCCCCEEEEeCcCCCHHHHHHHHCCC-EEEEEEhhhcC-h----hhccC---CCeEEEeCccccccC------CCCCc
Confidence            3466899999999999999999988775 99999987522 1    11111   248999999876544      34689


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEE
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i  143 (248)
                      |+|+|-++..     ......++.........++.++
T Consensus       272 D~vvsDm~~~-----p~~~~~l~~~wl~~~~~~~aI~  303 (375)
T 4auk_A          272 SWMVCDMVEK-----PAKVAALMAQWLVNGWCRETIF  303 (375)
T ss_dssp             EEEEECCSSC-----HHHHHHHHHHHHHTTSCSEEEE
T ss_pred             CEEEEcCCCC-----hHHhHHHHHHHHhccccceEEE
Confidence            9999988543     3334445554444444444433

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.16  E-value=8.9e-06  Score=70.01  Aligned_cols=114  Identities=17%  Similarity=0.004  Sum_probs=77.6

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCC-----CceEEEEEcCCCCCchhhhhccc
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRK-----NFIAEFFEADPCAENFETQMQEK  102 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~~  102 (248)
                      ..||.+|||+++|.|+=+..++... .+.+++.|+++.-+...++.....+.     ...+...+.|......  .   .
T Consensus       146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~--~---~  220 (359)
T 4fzv_A          146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGE--L---E  220 (359)
T ss_dssp             CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHH--H---S
T ss_pred             CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcch--h---c
Confidence            3488999999999999888777653 34799999999998888776654321     2347777887644221  1   3


Q ss_pred             CCceeEEEeccch----hhhc---------CCH-------HHHHHHHHHHhccccCCcEEEEEec
Q 025775          103 ANQADLVCCFQHL----QMCF---------ETE-------ERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       103 ~~~fD~V~~~~~l----~~~~---------~~~-------~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      .+.||.|++-.-.    +.+.         ...       ....+++.+..++|||||+++-++.
T Consensus       221 ~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTC  285 (359)
T 4fzv_A          221 GDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTC  285 (359)
T ss_dssp             TTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEES
T ss_pred             cccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeC
Confidence            5789999863210    1110         011       1235788999999999999887743

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=98.14  E-value=1.6e-05  Score=65.66  Aligned_cols=118  Identities=21%  Similarity=0.204  Sum_probs=75.5

Q ss_pred             hcCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEc-CCCCCchhhhhcccCCc
Q 025775           28 YSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEA-DPCAENFETQMQEKANQ  105 (248)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~  105 (248)
                      .+.++..||||||++|+++...+.. +...|.|+|+...--+.-. ..+..++. -+.+.+. |+....        +.+
T Consensus        91 ~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~-~~~ql~w~-lV~~~~~~Dv~~l~--------~~~  160 (321)
T 3lkz_A           91 FLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQ-LVQSYGWN-IVTMKSGVDVFYRP--------SEC  160 (321)
T ss_dssp             SCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCC-CCCBTTGG-GEEEECSCCTTSSC--------CCC
T ss_pred             CCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcc-hhhhcCCc-ceEEEeccCHhhCC--------CCC
Confidence            4568889999999999999877655 5668999999765211000 00011111 1677776 764422        367


Q ss_pred             eeEEEeccchhhhcCCHH----HHHHHHHHHhccccCC-cEEEEEecCh--hHHHHHHH
Q 025775          106 ADLVCCFQHLQMCFETEE----RARRLLQNVSSLLKPG-GYFLGITPDS--STIWAKYQ  157 (248)
Q Consensus       106 fD~V~~~~~l~~~~~~~~----~~~~~l~~~~~~Lkpg-G~~i~~~~~~--~~~~~~~~  157 (248)
                      +|+|+|..+ . .-.+..    ..-.+|+-+.+.|++| |-|++-+..+  ..+.+.+.
T Consensus       161 ~D~ivcDig-e-Ss~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY~~~v~e~l~  217 (321)
T 3lkz_A          161 CDTLLCDIG-E-SSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPYMPKVIEKME  217 (321)
T ss_dssp             CSEEEECCC-C-CCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTSHHHHHHHH
T ss_pred             CCEEEEECc-c-CCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCCChHHHHHHH
Confidence            999999765 2 112211    2234777778899998 8999888877  56655544

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.06  E-value=1.3e-05  Score=67.23  Aligned_cols=55  Identities=15%  Similarity=0.225  Sum_probs=46.5

Q ss_pred             HHHHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhc
Q 025775           22 TALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ   77 (248)
Q Consensus        22 ~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~   77 (248)
                      ..+|..+..++..|||++||+|..+...+..+. +++|+|+++.+++.|++++...
T Consensus       226 ~~~i~~~~~~~~~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          226 ERLVRMFSFVGDVVLDPFAGTGTTLIAAARWGR-RALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             HHHHHHHCCTTCEEEETTCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHh
Confidence            345666667899999999999998888777665 9999999999999999988653

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=97.95  E-value=4.3e-05  Score=69.23  Aligned_cols=116  Identities=15%  Similarity=0.050  Sum_probs=73.9

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc--------------CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA--------------LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE   96 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~--------------~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   96 (248)
                      ++.+|+|.+||+|+++......              ....+.|+|+++.+...|+...--++.. ...+.++|....+..
T Consensus       217 ~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~-~~~I~~~dtL~~~~~  295 (530)
T 3ufb_A          217 LGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLE-YPRIDPENSLRFPLR  295 (530)
T ss_dssp             TTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCS-CCEEECSCTTCSCGG
T ss_pred             CCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCc-cccccccccccCchh
Confidence            6779999999999998765431              1236999999999999888755444321 245677777554432


Q ss_pred             hhhcccCCceeEEEeccchhhh------------cCCHHHHHHHHHHHhcccc-------CCcEEEEEecCh
Q 025775           97 TQMQEKANQADLVCCFQHLQMC------------FETEERARRLLQNVSSLLK-------PGGYFLGITPDS  149 (248)
Q Consensus        97 ~~~~~~~~~fD~V~~~~~l~~~------------~~~~~~~~~~l~~~~~~Lk-------pgG~~i~~~~~~  149 (248)
                      ...  ...+||+|+++--+..-            ......-..+++.+.+.|+       |||++.+.+|++
T Consensus       296 ~~~--~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~g  365 (530)
T 3ufb_A          296 EMG--DKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPNG  365 (530)
T ss_dssp             GCC--GGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEEHH
T ss_pred             hhc--ccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEecch
Confidence            111  23579999986432110            0111112345666666665       799999998875

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.87  E-value=2.1e-05  Score=62.95  Aligned_cols=117  Identities=18%  Similarity=0.144  Sum_probs=74.5

Q ss_pred             hcCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEc-CCCCCchhhhhcccCCc
Q 025775           28 YSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEA-DPCAENFETQMQEKANQ  105 (248)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~  105 (248)
                      .+.++.+||||||++|+++...+.. +...|.|+|+-..--+.-+ ..+..++ ..+.|.++ |+..  +      ++.+
T Consensus        75 ~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~-~~~s~gw-n~v~fk~gvDv~~--~------~~~~  144 (267)
T 3p8z_A           75 MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPV-PMSTYGW-NIVKLMSGKDVFY--L------PPEK  144 (267)
T ss_dssp             SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCC-CCCCTTT-TSEEEECSCCGGG--C------CCCC
T ss_pred             CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcc-hhhhcCc-CceEEEeccceee--c------CCcc
Confidence            3568889999999999999977665 5668999999764321000 0000111 12789888 8632  1      3467


Q ss_pred             eeEEEeccchhhhcCCH----HHHHHHHHHHhccccCCcEEEEEecChhH--HHHHHH
Q 025775          106 ADLVCCFQHLQMCFETE----ERARRLLQNVSSLLKPGGYFLGITPDSST--IWAKYQ  157 (248)
Q Consensus       106 fD~V~~~~~l~~~~~~~----~~~~~~l~~~~~~LkpgG~~i~~~~~~~~--~~~~~~  157 (248)
                      +|.|+|..+--.  .+.    ...-.+++-+.+.|++ |-|++-+..+..  +.+.+.
T Consensus       145 ~DtllcDIgeSs--~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~p~v~e~l~  199 (267)
T 3p8z_A          145 CDTLLCDIGESS--PSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYMPTVIEHLE  199 (267)
T ss_dssp             CSEEEECCCCCC--SCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCSHHHHHHHH
T ss_pred             ccEEEEecCCCC--CChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCChhHHHHHH
Confidence            999999765421  221    1223478888899998 788888666633  554443

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.59  E-value=0.00016  Score=59.36  Aligned_cols=56  Identities=21%  Similarity=0.247  Sum_probs=46.3

Q ss_pred             HHHHHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhc
Q 025775           21 KTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ   77 (248)
Q Consensus        21 ~~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~   77 (248)
                      -..+|..+..++..|||..||+|..+......+. +++|+|+++.+++.|++++...
T Consensus       202 ~~~~i~~~~~~~~~vlD~f~GsGtt~~~a~~~gr-~~ig~e~~~~~~~~~~~r~~~~  257 (260)
T 1g60_A          202 IERIIRASSNPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLNQL  257 (260)
T ss_dssp             HHHHHHHHCCTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-
T ss_pred             HHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhc
Confidence            3355666778999999999999998877766664 9999999999999999988654

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=97.54  E-value=5.6e-05  Score=79.57  Aligned_cols=103  Identities=21%  Similarity=0.278  Sum_probs=56.3

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHc------CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCC-chhhhhccc
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETA------LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE-NFETQMQEK  102 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~------~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~  102 (248)
                      ++..+|||||.|+|..+..+...      ...+++.+|+|+...+.|++++....    +..-..|..+. .+      .
T Consensus      1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~d----i~~~~~d~~~~~~~------~ 1308 (2512)
T 2vz8_A         1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLH----VTQGQWDPANPAPG------S 1308 (2512)
T ss_dssp             SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHT----EEEECCCSSCCCC--------
T ss_pred             CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcc----cccccccccccccC------C
Confidence            46789999999999887665443      13479999999999888888776532    33322343221 11      2


Q ss_pred             CCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       103 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      ...||+|++..++|.    ..+....+.+++++|+|||++++..
T Consensus      1309 ~~~ydlvia~~vl~~----t~~~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A         1309 LGKADLLVCNCALAT----LGDPAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp             ---CCEEEEECC------------------------CCEEEEEE
T ss_pred             CCceeEEEEcccccc----cccHHHHHHHHHHhcCCCcEEEEEe
Confidence            457999999998884    3456788999999999999988864

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=97.54  E-value=0.0017  Score=55.30  Aligned_cols=130  Identities=14%  Similarity=0.136  Sum_probs=86.1

Q ss_pred             chhhhhHhHHHHHHHHHh----c--CCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcC-----
Q 025775           11 LTHHRLYEFAKTALIKIY----S--HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR-----   78 (248)
Q Consensus        11 ~~~~~~~~~~~~~li~~~----~--~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~-----   78 (248)
                      .|....--+++...++..    +  ++...|+.||||.......+... +...++-+|. |++++..++.+...+     
T Consensus        71 ~P~in~g~~~Rt~~iD~~v~~fl~~~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~  149 (334)
T 1rjd_A           71 FPVMNYGTYLRTVGIDAAILEFLVANEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRIS  149 (334)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHCSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhh
Confidence            453332345555444433    2  45678999999999877777653 3236667776 778777766655431     


Q ss_pred             ---------------CCceEEEEEcCCCCCchhhh-hcc--cCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCc
Q 025775           79 ---------------KNFIAEFFEADPCAENFETQ-MQE--KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGG  140 (248)
Q Consensus        79 ---------------~~~~~~~~~~d~~~~~~~~~-~~~--~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG  140 (248)
                                     ...+..++.+|+.+.+.... +..  ......++++-.++.|  .+.+....+++.+.+.. |+|
T Consensus       150 l~~~~~~~~~~~~~~~~~~~~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~Y--L~~~~~~~ll~~ia~~~-~~~  226 (334)
T 1rjd_A          150 LGLSKEDTAKSPFLIDQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCY--MHNNESQLLINTIMSKF-SHG  226 (334)
T ss_dssp             HTCCSSCCCCTTEEEECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGG--SCHHHHHHHHHHHHHHC-SSE
T ss_pred             cccccccccccccccCCCceEEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhC--CCHHHHHHHHHHHHhhC-CCc
Confidence                           12357899999988543211 111  2356789999999998  67889999999999887 677


Q ss_pred             EEEE
Q 025775          141 YFLG  144 (248)
Q Consensus       141 ~~i~  144 (248)
                      .+++
T Consensus       227 ~~v~  230 (334)
T 1rjd_A          227 LWIS  230 (334)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6653

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.48  E-value=0.0002  Score=60.57  Aligned_cols=82  Identities=15%  Similarity=0.048  Sum_probs=58.5

Q ss_pred             HHHHh-cCCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhc
Q 025775           24 LIKIY-SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ  100 (248)
Q Consensus        24 li~~~-~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  100 (248)
                      +++.+ ..|+..++|..||.|+++..++..  +.++|+|+|.++.+++.|+ ++..    .++.+++++..+  +...+.
T Consensus        49 vl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL~~----~Rv~lv~~nF~~--l~~~L~  121 (347)
T 3tka_A           49 AVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TIDD----PRFSIIHGPFSA--LGEYVA  121 (347)
T ss_dssp             HHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TCCC----TTEEEEESCGGG--HHHHHH
T ss_pred             HHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hhcC----CcEEEEeCCHHH--HHHHHH
Confidence            34444 358899999999999999999876  3469999999999999884 4421    358899998744  332232


Q ss_pred             cc--CCceeEEEec
Q 025775          101 EK--ANQADLVCCF  112 (248)
Q Consensus       101 ~~--~~~fD~V~~~  112 (248)
                      ..  .+++|.|+..
T Consensus       122 ~~g~~~~vDgILfD  135 (347)
T 3tka_A          122 ERDLIGKIDGILLD  135 (347)
T ss_dssp             HTTCTTCEEEEEEE
T ss_pred             hcCCCCcccEEEEC
Confidence            21  1368888663

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.43  E-value=0.00025  Score=58.61  Aligned_cols=100  Identities=15%  Similarity=0.002  Sum_probs=64.6

Q ss_pred             CCCCeEEEEcC------CCCccHhHHHHcCC-CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhccc
Q 025775           30 HPYVTVCDLYC------GAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (248)
Q Consensus        30 ~~~~~VLDlGc------G~G~~~~~l~~~~~-~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  102 (248)
                      +.+.+|||+|+      .+|.....-. .+. +.++++|+.+-..         ..    -.++++|+....       .
T Consensus       108 p~gmrVLDLGA~s~kg~APGS~VLr~~-~p~g~~VVavDL~~~~s---------da----~~~IqGD~~~~~-------~  166 (344)
T 3r24_A          108 PYNMRVIHFGAGSDKGVAPGTAVLRQW-LPTGTLLVDSDLNDFVS---------DA----DSTLIGDCATVH-------T  166 (344)
T ss_dssp             CTTCEEEEESCCCTTSBCHHHHHHHHH-SCTTCEEEEEESSCCBC---------SS----SEEEESCGGGEE-------E
T ss_pred             cCCCEEEeCCCCCCCCCCCcHHHHHHh-CCCCcEEEEeeCccccc---------CC----CeEEEccccccc-------c
Confidence            46899999996      5665322111 222 3899999987431         11    245999974422       2


Q ss_pred             CCceeEEEeccchhhh--c-----CCHHHHHHHHHHHhccccCCcEEEEEecChh
Q 025775          103 ANQADLVCCFQHLQMC--F-----ETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (248)
Q Consensus       103 ~~~fD~V~~~~~l~~~--~-----~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~  150 (248)
                      .++||+|++-++-.-.  .     ....-.+.+++-+.+.|+|||.|++-+..+.
T Consensus       167 ~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGs  221 (344)
T 3r24_A          167 ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS  221 (344)
T ss_dssp             SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS
T ss_pred             CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCC
Confidence            5789999997643211  0     1122466778888899999999999866553

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=97.32  E-value=0.011  Score=49.65  Aligned_cols=113  Identities=10%  Similarity=-0.014  Sum_probs=79.4

Q ss_pred             CeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcC--CCceEEEEEcCCCCCchhhhhccc---CCcee
Q 025775           33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR--KNFIAEFFEADPCAENFETQMQEK---ANQAD  107 (248)
Q Consensus        33 ~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~---~~~fD  107 (248)
                      .-|++||||-=.-...+.......++-+| .|..++..++.+...+  ...+..++.+|+.+ .....+...   ....-
T Consensus       104 ~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~Pt  181 (310)
T 2uyo_A          104 RQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSART  181 (310)
T ss_dssp             CEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTSCE
T ss_pred             CeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCCCE
Confidence            56999999875433333211224889999 6999998888886422  13457899999988 443333211   23456


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      ++++..+++|  .+.+....+++.+...+.||+.+++...+.
T Consensus       182 ~~i~Egvl~Y--l~~~~~~~ll~~l~~~~~~gs~l~~d~~~~  221 (310)
T 2uyo_A          182 AWLAEGLLMY--LPATAQDGLFTEIGGLSAVGSRIAVETSPL  221 (310)
T ss_dssp             EEEECSCGGG--SCHHHHHHHHHHHHHTCCTTCEEEEECCCT
T ss_pred             EEEEechHhh--CCHHHHHHHHHHHHHhCCCCeEEEEEecCC
Confidence            7788888998  567789999999999999999999985443

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=96.74  E-value=0.0053  Score=52.54  Aligned_cols=59  Identities=17%  Similarity=0.188  Sum_probs=48.8

Q ss_pred             CCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCc
Q 025775           32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN   94 (248)
Q Consensus        32 ~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~   94 (248)
                      +..|||||.|.|.++..++.. ..++|+++++++..+...+... ..   .++.++++|+...+
T Consensus        59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~~---~~l~ii~~D~l~~~  118 (353)
T 1i4w_A           59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-EG---SPLQILKRDPYDWS  118 (353)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-TT---SSCEEECSCTTCHH
T ss_pred             CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-cC---CCEEEEECCccchh
Confidence            589999999999999999875 4568999999999998887766 22   24899999996643

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=96.44  E-value=0.0045  Score=53.52  Aligned_cols=75  Identities=15%  Similarity=0.076  Sum_probs=55.1

Q ss_pred             CeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhc--ccCCceeEEE
Q 025775           33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ--EKANQADLVC  110 (248)
Q Consensus        33 ~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~fD~V~  110 (248)
                      .+|+||.||.|++...+...+...+.++|+++.+++..+..+..      ..++++|+.+........  .....+|+|+
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~~------~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~   76 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFPR------SLHVQEDVSLLNAEIIKGFFKNDMPIDGII   76 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCTT------SEEECCCGGGCCHHHHHHHHCSCCCCCEEE
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCCC------CceEecChhhcCHHHHHhhcccCCCeeEEE
Confidence            58999999999999999888887788999999988776655432      567889987654322110  0245799998


Q ss_pred             ecc
Q 025775          111 CFQ  113 (248)
Q Consensus       111 ~~~  113 (248)
                      ...
T Consensus        77 ggp   79 (376)
T 3g7u_A           77 GGP   79 (376)
T ss_dssp             ECC
T ss_pred             ecC
Confidence            654

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=96.38  E-value=0.005  Score=52.05  Aligned_cols=54  Identities=13%  Similarity=0.203  Sum_probs=45.1

Q ss_pred             HHHHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHh
Q 025775           22 TALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN   76 (248)
Q Consensus        22 ~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~   76 (248)
                      ..+|..+..++..|||.-||+|..+......+. +.+|+|+++..++.+++|+..
T Consensus       243 ~~~i~~~~~~~~~VlDpF~GsGtt~~aa~~~gr-~~ig~e~~~~~~~~~~~r~~~  296 (323)
T 1boo_A          243 EFFIRMLTEPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLD  296 (323)
T ss_dssp             HHHHHHHCCTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSC
T ss_pred             HHHHHHhCCCCCEEEECCCCCCHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence            355666778999999999999987777666564 999999999999999988754

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=96.27  E-value=0.0075  Score=50.91  Aligned_cols=55  Identities=25%  Similarity=0.252  Sum_probs=44.9

Q ss_pred             HHHHHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCCh---HHHHHHHHHHHh
Q 025775           21 KTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVAT---SGIGEARDTWEN   76 (248)
Q Consensus        21 ~~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~---~~l~~a~~~~~~   76 (248)
                      -..+|..+..++..|||.-||+|..+......+. +++|+|+++   ..++.+++|+..
T Consensus       232 ~~~~i~~~~~~~~~vlDpF~GsGtt~~aa~~~~r-~~ig~e~~~~~~~~~~~~~~Rl~~  289 (319)
T 1eg2_A          232 IERLVRALSHPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFLQD  289 (319)
T ss_dssp             HHHHHHHHSCTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC--
T ss_pred             HHHHHHHhCCCCCEEEecCCCCCHHHHHHHHcCC-cEEEEECCccHHHHHHHHHHHHHH
Confidence            3456677788999999999999988777766665 899999999   999999988754

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=96.21  E-value=0.05  Score=44.35  Aligned_cols=118  Identities=14%  Similarity=0.099  Sum_probs=72.4

Q ss_pred             HHHHHhcCCCCeEEEEcCCCCccHhHHHHc--------CCCeEEEEe-----CChH----------------------HH
Q 025775           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETA--------LIANYIGID-----VATS----------------------GI   67 (248)
Q Consensus        23 ~li~~~~~~~~~VLDlGcG~G~~~~~l~~~--------~~~~v~giD-----is~~----------------------~l   67 (248)
                      .|.+....-...|+|+||-.|+.+..++..        ...+++|+|     ..+.                      .+
T Consensus        61 ~l~~~i~~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l  140 (257)
T 3tos_A           61 ALYRQVLDVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYL  140 (257)
T ss_dssp             HHHHHTTTSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHH
T ss_pred             HHHHHhhCCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHH
Confidence            344444455568999999999988776542        236899999     3321                      11


Q ss_pred             HHHHHHHH---hcCC-CceEEEEEcCCCCCchhhhhcc-cCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEE
Q 025775           68 GEARDTWE---NQRK-NFIAEFFEADPCAENFETQMQE-KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYF  142 (248)
Q Consensus        68 ~~a~~~~~---~~~~-~~~~~~~~~d~~~~~~~~~~~~-~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~  142 (248)
                      +...+..+   ..+. ..++.++.+++.+. +...+.. +..++|+|..-...      -+.....++.+...|+|||++
T Consensus       141 ~~~l~~~~~~~~~g~~~~~i~li~G~~~dT-L~~~l~~~~~~~~dlv~ID~D~------Y~~t~~~le~~~p~l~~GGvI  213 (257)
T 3tos_A          141 KEVLDAHECSDFFGHVTQRSVLVEGDVRET-VPRYLAENPQTVIALAYFDLDL------YEPTKAVLEAIRPYLTKGSIV  213 (257)
T ss_dssp             HHHHHHHHTTSTTTTSCCSEEEEESCHHHH-HHHHHHHCTTCCEEEEEECCCC------HHHHHHHHHHHGGGEEEEEEE
T ss_pred             HHHHHHHhhhhhcCCCCCcEEEEEecHHHH-HHHHHHhCCCCceEEEEEcCcc------cchHHHHHHHHHHHhCCCcEE
Confidence            11111111   1121 24689999997432 2111111 34579999876632      334567888999999999999


Q ss_pred             EEEec
Q 025775          143 LGITP  147 (248)
Q Consensus       143 i~~~~  147 (248)
                      ++.-.
T Consensus       214 v~DD~  218 (257)
T 3tos_A          214 AFDEL  218 (257)
T ss_dssp             EESST
T ss_pred             EEcCC
Confidence            99843

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=96.16  E-value=0.0028  Score=54.08  Aligned_cols=73  Identities=15%  Similarity=0.144  Sum_probs=53.9

Q ss_pred             CCeEEEEcCCCCccHhHHHHcC--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           32 YVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        32 ~~~VLDlGcG~G~~~~~l~~~~--~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      ..+|+|+.||.|+....+...+  ...+.++|+++.+++..+..+..      ..++++|+.+..... +  ....+|+|
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~------~~~~~~Di~~~~~~~-~--~~~~~D~l   72 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH------TQLLAKTIEGITLEE-F--DRLSFDMI   72 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT------SCEECSCGGGCCHHH-H--HHHCCSEE
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc------cccccCCHHHccHhH-c--CcCCcCEE
Confidence            3579999999999999888877  45799999999999888776543      346788886643211 1  11258999


Q ss_pred             Eecc
Q 025775          110 CCFQ  113 (248)
Q Consensus       110 ~~~~  113 (248)
                      +...
T Consensus        73 ~~gp   76 (343)
T 1g55_A           73 LMSP   76 (343)
T ss_dssp             EECC
T ss_pred             EEcC
Confidence            8765

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=96.06  E-value=0.011  Score=50.01  Aligned_cols=70  Identities=14%  Similarity=0.051  Sum_probs=52.0

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      .+.+|+|+.||.|+....+...+...+.++|+++.+++..+..+...        .++|+.+....     .-..+|+|+
T Consensus        10 ~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~--------~~~Di~~~~~~-----~~~~~D~l~   76 (327)
T 2c7p_A           10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK--------PEGDITQVNEK-----TIPDHDILC   76 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC--------CBSCGGGSCGG-----GSCCCSEEE
T ss_pred             CCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCC--------CcCCHHHcCHh-----hCCCCCEEE
Confidence            35789999999999999998888878999999999988777665431        15777553321     123589998


Q ss_pred             ecc
Q 025775          111 CFQ  113 (248)
Q Consensus       111 ~~~  113 (248)
                      ...
T Consensus        77 ~gp   79 (327)
T 2c7p_A           77 AGF   79 (327)
T ss_dssp             EEC
T ss_pred             ECC
Confidence            753

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=95.76  E-value=0.0039  Score=51.50  Aligned_cols=109  Identities=6%  Similarity=-0.070  Sum_probs=73.9

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      .+..+||+-+|+|.......+.. .+++.+|.++..++.-++.....   .++.+++.|...  ....+..+..+||+|+
T Consensus        91 n~~~~LDlfaGSGaLgiEaLS~~-d~~vfvE~~~~a~~~L~~Nl~~~---~~~~V~~~D~~~--~L~~l~~~~~~fdLVf  164 (283)
T 2oo3_A           91 NLNSTLSYYPGSPYFAINQLRSQ-DRLYLCELHPTEYNFLLKLPHFN---KKVYVNHTDGVS--KLNALLPPPEKRGLIF  164 (283)
T ss_dssp             SSSSSCCEEECHHHHHHHHSCTT-SEEEEECCSHHHHHHHTTSCCTT---SCEEEECSCHHH--HHHHHCSCTTSCEEEE
T ss_pred             cCCCceeEeCCcHHHHHHHcCCC-CeEEEEeCCHHHHHHHHHHhCcC---CcEEEEeCcHHH--HHHHhcCCCCCccEEE
Confidence            35668999999999888887744 69999999999988776655432   358888888633  1111212345799998


Q ss_pred             eccchhhhcCCHHHHHHHHHHHhc--cccCCcEEEEEecCh
Q 025775          111 CFQHLQMCFETEERARRLLQNVSS--LLKPGGYFLGITPDS  149 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~~~~--~LkpgG~~i~~~~~~  149 (248)
                      +--...    ..+....+++.+.+  .+.|+|++++..|--
T Consensus       165 iDPPYe----~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~  201 (283)
T 2oo3_A          165 IDPSYE----RKEEYKEIPYAIKNAYSKFSTGLYCVWYPVV  201 (283)
T ss_dssp             ECCCCC----STTHHHHHHHHHHHHHHHCTTSEEEEEEEES
T ss_pred             ECCCCC----CCcHHHHHHHHHHHhCccCCCeEEEEEEecc
Confidence            754222    12345566665555  446999999996633

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=95.46  E-value=0.042  Score=47.03  Aligned_cols=98  Identities=12%  Similarity=0.076  Sum_probs=62.7

Q ss_pred             cCCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc-cCCc
Q 025775           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ  105 (248)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~  105 (248)
                      +.++.+||-+|||. |..+..+++. +...|+++|.+++.++.+++.-.       ...+.  ..+.++.+.+.+ ..+.
T Consensus       188 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa-------~~vi~--~~~~~~~~~~~~~~~gg  258 (371)
T 1f8f_A          188 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGA-------THVIN--SKTQDPVAAIKEITDGG  258 (371)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTC-------SEEEE--TTTSCHHHHHHHHTTSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC-------CEEec--CCccCHHHHHHHhcCCC
Confidence            45889999999886 6666666654 55579999999998888764311       11222  222233222211 1237


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +|+|+.....          ...++...+.|+++|.++..
T Consensus       259 ~D~vid~~g~----------~~~~~~~~~~l~~~G~iv~~  288 (371)
T 1f8f_A          259 VNFALESTGS----------PEILKQGVDALGILGKIAVV  288 (371)
T ss_dssp             EEEEEECSCC----------HHHHHHHHHTEEEEEEEEEC
T ss_pred             CcEEEECCCC----------HHHHHHHHHHHhcCCEEEEe
Confidence            9999754421          23567778899999998876

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=95.43  E-value=0.04  Score=45.90  Aligned_cols=75  Identities=17%  Similarity=0.127  Sum_probs=54.0

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCe--EEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIAN--YIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~--v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      ...+|+|+-||.|+....+...+...  +.++|+++.+++.-+..+..      ..++.+|+.+..... ++ ..+.+|+
T Consensus        15 ~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~~------~~~~~~DI~~i~~~~-i~-~~~~~Dl   86 (295)
T 2qrv_A           15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQG------KIMYVGDVRSVTQKH-IQ-EWGPFDL   86 (295)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTTT------CEEEECCGGGCCHHH-HH-HTCCCSE
T ss_pred             CCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCCC------CceeCCChHHccHHH-hc-ccCCcCE
Confidence            45689999999999998888888755  69999999988765544432      357789987654321 11 1246899


Q ss_pred             EEecc
Q 025775          109 VCCFQ  113 (248)
Q Consensus       109 V~~~~  113 (248)
                      ++...
T Consensus        87 l~ggp   91 (295)
T 2qrv_A           87 VIGGS   91 (295)
T ss_dssp             EEECC
T ss_pred             EEecC
Confidence            98754

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=95.32  E-value=0.037  Score=46.74  Aligned_cols=98  Identities=13%  Similarity=0.092  Sum_probs=62.3

Q ss_pred             cCCCCeEEEEcCCC-CccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775           29 SHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      ..++.+||-+|+|. |..+..+++....+|+++|.+++.++.+++.    +.   ...+  |..+.++.+.+....+.+|
T Consensus       164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga---~~~i--~~~~~~~~~~~~~~~g~~d  234 (340)
T 3s2e_A          164 TRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRL----GA---EVAV--NARDTDPAAWLQKEIGGAH  234 (340)
T ss_dssp             CCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----TC---SEEE--ETTTSCHHHHHHHHHSSEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHc----CC---CEEE--eCCCcCHHHHHHHhCCCCC
Confidence            45899999999975 6666666665334999999999988877653    10   1122  2223333332222234789


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +|+....      .    ...++.+.+.|+++|.++..
T Consensus       235 ~vid~~g------~----~~~~~~~~~~l~~~G~iv~~  262 (340)
T 3s2e_A          235 GVLVTAV------S----PKAFSQAIGMVRRGGTIALN  262 (340)
T ss_dssp             EEEESSC------C----HHHHHHHHHHEEEEEEEEEC
T ss_pred             EEEEeCC------C----HHHHHHHHHHhccCCEEEEe
Confidence            8865331      1    23566777889999999876

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=95.28  E-value=0.029  Score=47.23  Aligned_cols=69  Identities=13%  Similarity=0.039  Sum_probs=52.1

Q ss_pred             CeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEec
Q 025775           33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCF  112 (248)
Q Consensus        33 ~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~  112 (248)
                      .+|+||-||.|++...+...++.-+.++|+++.+++.-+..+.       ..++.+|+.+....     .-...|+++..
T Consensus         1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~-------~~~~~~DI~~i~~~-----~~~~~D~l~gg   68 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS-------AKLIKGDISKISSD-----EFPKCDGIIGG   68 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCC-------SEEEESCGGGCCGG-----GSCCCSEEECC
T ss_pred             CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC-------CCcccCChhhCCHh-----hCCcccEEEec
Confidence            4799999999999999988888778899999998876554432       35678998765432     12468998764


Q ss_pred             c
Q 025775          113 Q  113 (248)
Q Consensus       113 ~  113 (248)
                      .
T Consensus        69 p   69 (331)
T 3ubt_Y           69 P   69 (331)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=95.02  E-value=0.036  Score=46.90  Aligned_cols=73  Identities=11%  Similarity=0.106  Sum_probs=53.2

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCC--CeE-EEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALI--ANY-IGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~--~~v-~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      ...+++|+.||.|+....+...+.  ..+ .++|+++.+++.-+..+..      . .+++|+.+..... +  +...+|
T Consensus         9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~------~-~~~~DI~~~~~~~-i--~~~~~D   78 (327)
T 3qv2_A            9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE------E-VQVKNLDSISIKQ-I--ESLNCN   78 (327)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC------C-CBCCCTTTCCHHH-H--HHTCCC
T ss_pred             CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC------C-cccCChhhcCHHH-h--ccCCCC
Confidence            456899999999999999888774  567 7999999988776665532      1 5678887765432 2  123689


Q ss_pred             EEEecc
Q 025775          108 LVCCFQ  113 (248)
Q Consensus       108 ~V~~~~  113 (248)
                      +++...
T Consensus        79 il~ggp   84 (327)
T 3qv2_A           79 TWFMSP   84 (327)
T ss_dssp             EEEECC
T ss_pred             EEEecC
Confidence            998654

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=94.98  E-value=0.27  Score=35.61  Aligned_cols=102  Identities=10%  Similarity=0.017  Sum_probs=63.0

Q ss_pred             CCeEEEEcCCC-CccHhHHH-HcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           32 YVTVCDLYCGA-GVDVDKWE-TALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        32 ~~~VLDlGcG~-G~~~~~l~-~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      ..+|+=+|||. |..+...+ ..+. .|+++|.+++.++.++.    .+    +..+.+|..+.......  .-..+|+|
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~----~g----~~~i~gd~~~~~~l~~a--~i~~ad~v   75 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRE----RG----VRAVLGNAANEEIMQLA--HLECAKWL   75 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHH----TT----CEEEESCTTSHHHHHHT--TGGGCSEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHH----cC----CCEEECCCCCHHHHHhc--CcccCCEE
Confidence            35789999986 54443333 3355 89999999998877653    23    66789998775543221  12468888


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhH
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST  151 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~  151 (248)
                      ++..      .+..... .+-...+.+.|+..++....+...
T Consensus        76 i~~~------~~~~~n~-~~~~~a~~~~~~~~iiar~~~~~~  110 (140)
T 3fwz_A           76 ILTI------PNGYEAG-EIVASARAKNPDIEIIARAHYDDE  110 (140)
T ss_dssp             EECC------SCHHHHH-HHHHHHHHHCSSSEEEEEESSHHH
T ss_pred             EEEC------CChHHHH-HHHHHHHHHCCCCeEEEEECCHHH
Confidence            6543      2222222 233355667888887776665543

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=94.93  E-value=0.031  Score=47.40  Aligned_cols=72  Identities=13%  Similarity=0.192  Sum_probs=51.7

Q ss_pred             CeEEEEcCCCCccHhHHHHcCC--CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           33 VTVCDLYCGAGVDVDKWETALI--ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        33 ~~VLDlGcG~G~~~~~l~~~~~--~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      .+++|+.||.|+....+...+.  ..+.++|+++.+++.-+..+..      ..+++.|+.+..... +  +...+|+++
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~------~~~~~~DI~~~~~~~-~--~~~~~D~l~   74 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE------TNLLNRNIQQLTPQV-I--KKWNVDTIL   74 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT------SCEECCCGGGCCHHH-H--HHTTCCEEE
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC------CceeccccccCCHHH-h--ccCCCCEEE
Confidence            4799999999999988877775  5688999999988766655543      336778886654322 1  123689998


Q ss_pred             ecc
Q 025775          111 CFQ  113 (248)
Q Consensus       111 ~~~  113 (248)
                      ...
T Consensus        75 ggp   77 (333)
T 4h0n_A           75 MSP   77 (333)
T ss_dssp             ECC
T ss_pred             ecC
Confidence            643

>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*

Probab=94.68  E-value=1.7  Score=36.62  Aligned_cols=190  Identities=13%  Similarity=0.092  Sum_probs=107.0

Q ss_pred             ccchhhhhHhHHHHHHHHHhc-------CCCCeEEEEcCCCCccHhHHHHcC--CCeEEEEeCChHHHHHHHHHHHhcC-
Q 025775            9 SELTHHRLYEFAKTALIKIYS-------HPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQR-   78 (248)
Q Consensus         9 ~~~~~~~~~~~~~~~li~~~~-------~~~~~VLDlGcG~G~~~~~l~~~~--~~~v~giDis~~~l~~a~~~~~~~~-   78 (248)
                      ++.|...---|++...++..+       ++...|+-||||-=.....+...+  ...++=+|. |+.++.-++.+...+ 
T Consensus        61 rr~P~inrG~~~Rt~~iD~~v~~fl~~~~~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~  139 (334)
T 3iei_A           61 RKAPEINRGYFARVHGVSQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPP  139 (334)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHH
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchh
Confidence            456654433566665555443       246789999998865555554432  235666665 444443333333200 


Q ss_pred             ---------------------CCceEEEEEcCCCCCc-hhhhhcc---cCCceeEEEeccchhhhcCCHHHHHHHHHHHh
Q 025775           79 ---------------------KNFIAEFFEADPCAEN-FETQMQE---KANQADLVCCFQHLQMCFETEERARRLLQNVS  133 (248)
Q Consensus        79 ---------------------~~~~~~~~~~d~~~~~-~~~~~~~---~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~  133 (248)
                                           ...+..++.+|+.+.. +...+..   .....-++++-.++.|  .+.+....+++.+.
T Consensus       140 l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~Y--L~~~~~~~ll~~ia  217 (334)
T 3iei_A          140 LSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVY--MTPEQSANLLKWAA  217 (334)
T ss_dssp             HHHHHHHHSSSSSCBCCTTEEECSSEEEEECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGG--SCHHHHHHHHHHHH
T ss_pred             hhhhhcccccccccccccccCCCCceEEEccccccchhHHHHHHhcCCCCCCCEEEEEchhhhC--CCHHHHHHHHHHHH
Confidence                                 0234788999997742 2222211   2344567888888888  67888999999999


Q ss_pred             ccccCCcEEEEEecCh-hHHHHHHHHhHhhhhCCCCCCCCCCCCCcccCceeEEEecccCCCCCcceeeeEEEEccCccC
Q 025775          134 SLLKPGGYFLGITPDS-STIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISA  212 (248)
Q Consensus       134 ~~LkpgG~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~y~~~l~~~~~~  212 (248)
                      +...+|..++....+. +...+.+.+++.   ..|         .                  |..+          .  
T Consensus       218 ~~f~~~~~i~yE~i~p~d~fg~~M~~~l~---~~g---------~------------------pl~s----------l--  255 (334)
T 3iei_A          218 NSFERAMFINYEQVNMGDRFGQIMIENLR---RRQ---------C------------------DLAG----------V--  255 (334)
T ss_dssp             HHCSSEEEEEEEECCTTSHHHHHHHHHHH---TTT---------C------------------CCTT----------G--
T ss_pred             HhCCCceEEEEeccCCCCHHHHHHHHHHH---HhC---------C------------------CCcc----------c--
Confidence            8775554444433222 333333333221   111         0                  0001          0  


Q ss_pred             CCcceechHHHHHHHHHcCcEEEEecCchHHHh
Q 025775          213 ETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYD  245 (248)
Q Consensus       213 ~~e~lv~~~~l~~~~~~~G~~~v~~~~f~~~~~  245 (248)
                        ....+.+...+.+.++||+.+...+..++|+
T Consensus       256 --~~y~t~~~~~~r~~~~Gw~~~~~~d~~~~~~  286 (334)
T 3iei_A          256 --ETCKSLESQKERLLSNGWETASAVDMMELYN  286 (334)
T ss_dssp             --GGGGCHHHHHHHHHTTTCSEEEEEEHHHHHH
T ss_pred             --ccCCCHHHHHHHHHHcCCCcceeecHHHHHH
Confidence              0123567778888999999888887777763

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=94.49  E-value=0.17  Score=42.95  Aligned_cols=101  Identities=13%  Similarity=0.023  Sum_probs=63.5

Q ss_pred             cCCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcC-CCCCchhhhhcc--cC
Q 025775           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEAD-PCAENFETQMQE--KA  103 (248)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~--~~  103 (248)
                      +.++.+||=+|+|. |..+..+++. +...|+++|.+++-++.+++. ...-    +.+ ..+ ....++.+.+..  ..
T Consensus       177 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~~~----~~~-~~~~~~~~~~~~~v~~~t~g  250 (363)
T 3m6i_A          177 VRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CPEV----VTH-KVERLSAEESAKKIVESFGG  250 (363)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CTTC----EEE-ECCSCCHHHHHHHHHHHTSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-chhc----ccc-cccccchHHHHHHHHHHhCC
Confidence            56899999999875 6666666655 554599999999999988865 2211    222 222 111222222221  13


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      ..+|+|+....      .    ...++.+.+.|++||.++..
T Consensus       251 ~g~Dvvid~~g------~----~~~~~~~~~~l~~~G~iv~~  282 (363)
T 3m6i_A          251 IEPAVALECTG------V----ESSIAAAIWAVKFGGKVFVI  282 (363)
T ss_dssp             CCCSEEEECSC------C----HHHHHHHHHHSCTTCEEEEC
T ss_pred             CCCCEEEECCC------C----hHHHHHHHHHhcCCCEEEEE
Confidence            47999976432      1    12466677899999999876

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=94.03  E-value=0.13  Score=44.83  Aligned_cols=61  Identities=5%  Similarity=-0.056  Sum_probs=46.2

Q ss_pred             CCCCeEEEEcCCCCccHhHHH-Hc-C-CCeEEEEeCChHHHHHHHHHHHh--cCCC-ceEEEEEcCC
Q 025775           30 HPYVTVCDLYCGAGVDVDKWE-TA-L-IANYIGIDVATSGIGEARDTWEN--QRKN-FIAEFFEADP   90 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~-~~-~-~~~v~giDis~~~l~~a~~~~~~--~~~~-~~~~~~~~d~   90 (248)
                      +++..|+|+|++.|..+..++ .. + .++|++++++|...+..++....  ++.. .++..+.+.+
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al  291 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGA  291 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEE
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEE
Confidence            478899999999999988877 33 2 36999999999999998887765  2112 3466666554

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=94.01  E-value=0.097  Score=44.37  Aligned_cols=98  Identities=12%  Similarity=0.064  Sum_probs=62.0

Q ss_pred             cCCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc--cCC
Q 025775           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (248)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~  104 (248)
                      +.++.+||=+|+|. |..+..++.. +..+|+++|.+++-++.+++.-.       ...+  |..+.++.+.+.+  ...
T Consensus       164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa-------~~vi--~~~~~~~~~~v~~~t~g~  234 (352)
T 3fpc_A          164 IKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGA-------TDII--NYKNGDIVEQILKATDGK  234 (352)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTC-------CEEE--CGGGSCHHHHHHHHTTTC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCC-------ceEE--cCCCcCHHHHHHHHcCCC
Confidence            45899999999875 6666666665 44489999999988887765321       1122  2222333322221  123


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      .+|+|+....-          ...++.+.+.|+|||.++..
T Consensus       235 g~D~v~d~~g~----------~~~~~~~~~~l~~~G~~v~~  265 (352)
T 3fpc_A          235 GVDKVVIAGGD----------VHTFAQAVKMIKPGSDIGNV  265 (352)
T ss_dssp             CEEEEEECSSC----------TTHHHHHHHHEEEEEEEEEC
T ss_pred             CCCEEEECCCC----------hHHHHHHHHHHhcCCEEEEe
Confidence            69999754321          13466677899999999865

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=93.86  E-value=0.2  Score=42.77  Aligned_cols=98  Identities=16%  Similarity=0.088  Sum_probs=63.0

Q ss_pred             cCCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc----c
Q 025775           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE----K  102 (248)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~----~  102 (248)
                      +.++.+||=+|+|. |..+..++.. +...|+++|.++.-++.+++.-.       ...  .|..+.++.+.+.+    .
T Consensus       180 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa-------~~v--i~~~~~~~~~~i~~~~~~~  250 (370)
T 4ej6_A          180 IKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGA-------TAT--VDPSAGDVVEAIAGPVGLV  250 (370)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTC-------SEE--ECTTSSCHHHHHHSTTSSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC-------CEE--ECCCCcCHHHHHHhhhhcc
Confidence            56899999999875 6556666654 55589999999998887765311       111  23333333332221    2


Q ss_pred             CCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       103 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      .+.+|+|+-...      .    ...++.+.+.|++||.++..
T Consensus       251 ~gg~Dvvid~~G------~----~~~~~~~~~~l~~~G~vv~~  283 (370)
T 4ej6_A          251 PGGVDVVIECAG------V----AETVKQSTRLAKAGGTVVIL  283 (370)
T ss_dssp             TTCEEEEEECSC------C----HHHHHHHHHHEEEEEEEEEC
T ss_pred             CCCCCEEEECCC------C----HHHHHHHHHHhccCCEEEEE
Confidence            347999975432      1    23566777899999999876

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=93.69  E-value=0.062  Score=41.43  Aligned_cols=96  Identities=16%  Similarity=0.122  Sum_probs=58.2

Q ss_pred             cCCCCeEEEEcCC--CCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc--cC
Q 025775           29 SHPYVTVCDLYCG--AGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KA  103 (248)
Q Consensus        29 ~~~~~~VLDlGcG--~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~  103 (248)
                      +.++.+||-.|++  .|..+..++.. +. +|+++|.+++.++.+++    .+    ... ..|..+.+..+.+..  ..
T Consensus        36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~----~g----~~~-~~d~~~~~~~~~~~~~~~~  105 (198)
T 1pqw_A           36 LSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSR----LG----VEY-VGDSRSVDFADEILELTDG  105 (198)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHT----TC----CSE-EEETTCSTHHHHHHHHTTT
T ss_pred             CCCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cC----CCE-EeeCCcHHHHHHHHHHhCC
Confidence            4578999999953  35545444443 54 89999999887766543    12    111 124433333222211  12


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      ..+|+|+.....           ..++.+.+.|+|||.++..
T Consensus       106 ~~~D~vi~~~g~-----------~~~~~~~~~l~~~G~~v~~  136 (198)
T 1pqw_A          106 YGVDVVLNSLAG-----------EAIQRGVQILAPGGRFIEL  136 (198)
T ss_dssp             CCEEEEEECCCT-----------HHHHHHHHTEEEEEEEEEC
T ss_pred             CCCeEEEECCch-----------HHHHHHHHHhccCCEEEEE
Confidence            469999765421           2467778899999998875

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=93.63  E-value=0.29  Score=41.16  Aligned_cols=99  Identities=17%  Similarity=0.208  Sum_probs=61.3

Q ss_pred             hcCCCCeEEEEcCCC-CccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           28 YSHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        28 ~~~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      -+.++.+||-+|+|. |..+..++...-.+|+++|.+++-++.+++.    +    +. ...|..+.++.+.+....+.+
T Consensus       161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~l----G----a~-~~~d~~~~~~~~~~~~~~~~~  231 (339)
T 1rjw_A          161 GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKEL----G----AD-LVVNPLKEDAAKFMKEKVGGV  231 (339)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT----T----CS-EEECTTTSCHHHHHHHHHSSE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHC----C----CC-EEecCCCccHHHHHHHHhCCC
Confidence            356889999999964 5555555554334999999999888877531    2    11 123444333332221111579


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      |+|+.....          ...++...+.|+++|.++..
T Consensus       232 d~vid~~g~----------~~~~~~~~~~l~~~G~~v~~  260 (339)
T 1rjw_A          232 HAAVVTAVS----------KPAFQSAYNSIRRGGACVLV  260 (339)
T ss_dssp             EEEEESSCC----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             CEEEECCCC----------HHHHHHHHHHhhcCCEEEEe
Confidence            999764421          12456677889999998865

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=93.56  E-value=0.63  Score=38.80  Aligned_cols=120  Identities=13%  Similarity=0.134  Sum_probs=66.1

Q ss_pred             CCCeEEEEcCCCCccHhH-HH---H-cCCC--eEEEEeCCh--------HHHHH-HHHHHHh----cCCCceEEEEEcCC
Q 025775           31 PYVTVCDLYCGAGVDVDK-WE---T-ALIA--NYIGIDVAT--------SGIGE-ARDTWEN----QRKNFIAEFFEADP   90 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~-l~---~-~~~~--~v~giDis~--------~~l~~-a~~~~~~----~~~~~~~~~~~~d~   90 (248)
                      +..+|||+|-|||..... |.   + .+..  +++.+|-.+        ..... .......    ........+..+|+
T Consensus        96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa  175 (308)
T 3vyw_A           96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA  175 (308)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred             CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence            456899999999976532 21   1 1222  456666422        11121 1111111    11123456777886


Q ss_pred             CCCchhhhhcc-cCCceeEEEecc-chhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHHH
Q 025775           91 CAENFETQMQE-KANQADLVCCFQ-HLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQK  158 (248)
Q Consensus        91 ~~~~~~~~~~~-~~~~fD~V~~~~-~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~  158 (248)
                      .+     .++. ...++|+|+.-. +...  .+.-...++++.+.++++|||++. |...+..+++.+.+
T Consensus       176 ~~-----~l~~l~~~~~Da~flDgFsP~k--NPeLWs~e~f~~l~~~~~pgg~la-TYtaag~VRR~L~~  237 (308)
T 3vyw_A          176 RK-----RIKEVENFKADAVFHDAFSPYK--NPELWTLDFLSLIKERIDEKGYWV-SYSSSLSVRKSLLT  237 (308)
T ss_dssp             HH-----HGGGCCSCCEEEEEECCSCTTT--SGGGGSHHHHHHHHTTEEEEEEEE-ESCCCHHHHHHHHH
T ss_pred             HH-----HHhhhcccceeEEEeCCCCccc--CcccCCHHHHHHHHHHhCCCcEEE-EEeCcHHHHHHHHH
Confidence            33     1221 235799997643 2211  111124689999999999999886 55556666666654

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=93.16  E-value=0.11  Score=44.99  Aligned_cols=106  Identities=14%  Similarity=0.001  Sum_probs=63.0

Q ss_pred             cCCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCch-hhhhcc--cC
Q 025775           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF-ETQMQE--KA  103 (248)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~--~~  103 (248)
                      +.++.+||-+|||. |..+..++.. +..+|+++|.+++.++.+++    .+    +..+  |..+.++ .+.+..  ..
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lG----a~~i--~~~~~~~~~~~~~~~~~g  252 (398)
T 2dph_A          183 VKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD----AG----FETI--DLRNSAPLRDQIDQILGK  252 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT----TT----CEEE--ETTSSSCHHHHHHHHHSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cC----CcEE--cCCCcchHHHHHHHHhCC
Confidence            45899999999976 7666666654 55589999999998877653    22    2223  2222222 222211  12


Q ss_pred             CceeEEEeccchhhhcCCHH-----HHHHHHHHHhccccCCcEEEEE
Q 025775          104 NQADLVCCFQHLQMCFETEE-----RARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~-----~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      ..+|+|+-...-... ....     .....++.+.+.|++||.++..
T Consensus       253 ~g~Dvvid~~g~~~~-~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~  298 (398)
T 2dph_A          253 PEVDCGVDAVGFEAH-GLGDEANTETPNGALNSLFDVVRAGGAIGIP  298 (398)
T ss_dssp             SCEEEEEECSCTTCB-CSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred             CCCCEEEECCCCccc-cccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence            369999764432110 0000     0113467778899999998765

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=93.00  E-value=0.23  Score=42.40  Aligned_cols=95  Identities=16%  Similarity=0.104  Sum_probs=59.9

Q ss_pred             cCCCCeEEEEcCCC-CccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775           29 SHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      +.++.+||-+|+|. |..+..++.....+|+++|.+++.++.+++.  +.     ...+  |..+.+....+   .+.+|
T Consensus       192 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~l--Ga-----~~vi--~~~~~~~~~~~---~~g~D  259 (369)
T 1uuf_A          192 AGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKAL--GA-----DEVV--NSRNADEMAAH---LKSFD  259 (369)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH--TC-----SEEE--ETTCHHHHHTT---TTCEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc--CC-----cEEe--ccccHHHHHHh---hcCCC
Confidence            56899999999875 6666666655333799999999988887652  11     1122  22222221111   25799


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +|+......          ..++...+.|+++|.++..
T Consensus       260 vvid~~g~~----------~~~~~~~~~l~~~G~iv~~  287 (369)
T 1uuf_A          260 FILNTVAAP----------HNLDDFTTLLKRDGTMTLV  287 (369)
T ss_dssp             EEEECCSSC----------CCHHHHHTTEEEEEEEEEC
T ss_pred             EEEECCCCH----------HHHHHHHHHhccCCEEEEe
Confidence            997644221          1355677899999998875

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=92.94  E-value=0.14  Score=43.43  Aligned_cols=100  Identities=10%  Similarity=0.060  Sum_probs=60.6

Q ss_pred             cCCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCC-CCchhhhhcc-cCC
Q 025775           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPC-AENFETQMQE-KAN  104 (248)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~-~~~  104 (248)
                      +.++.+||-+|+|. |..+..++.. +..+|+++|.++.-++.+++.    +.   ...+..+-. ..++...+.. ...
T Consensus       169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga---~~vi~~~~~~~~~~~~~i~~~~~~  241 (356)
T 1pl8_A          169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI----GA---DLVLQISKESPQEIARKVEGQLGC  241 (356)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TC---SEEEECSSCCHHHHHHHHHHHHTS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CC---CEEEcCcccccchHHHHHHHHhCC
Confidence            45899999999875 6666666654 445899999999888777642    21   112221100 1122211111 125


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      .+|+|+....      .    ...++...++|++||.++..
T Consensus       242 g~D~vid~~g------~----~~~~~~~~~~l~~~G~iv~~  272 (356)
T 1pl8_A          242 KPEVTIECTG------A----EASIQAGIYATRSGGTLVLV  272 (356)
T ss_dssp             CCSEEEECSC------C----HHHHHHHHHHSCTTCEEEEC
T ss_pred             CCCEEEECCC------C----hHHHHHHHHHhcCCCEEEEE
Confidence            6999975432      1    12456677899999999876

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=92.84  E-value=0.2  Score=41.99  Aligned_cols=97  Identities=13%  Similarity=-0.010  Sum_probs=59.8

Q ss_pred             cCCCCeEEEEcCC--CCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC-Cchhhhhcc-cCC
Q 025775           29 SHPYVTVCDLYCG--AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-ENFETQMQE-KAN  104 (248)
Q Consensus        29 ~~~~~~VLDlGcG--~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~-~~~  104 (248)
                      +.++.+||-.||+  .|..+..++.....+|+++|.+++.++.+++ .   +    .. ...|..+ .++...+.. ..+
T Consensus       143 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~-~---g----~~-~~~d~~~~~~~~~~~~~~~~~  213 (333)
T 1v3u_A          143 VKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQ-I---G----FD-AAFNYKTVNSLEEALKKASPD  213 (333)
T ss_dssp             CCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-T---T----CS-EEEETTSCSCHHHHHHHHCTT
T ss_pred             CCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-c---C----Cc-EEEecCCHHHHHHHHHHHhCC
Confidence            4578999999983  4555555544433389999999988877732 2   1    11 1224433 333322211 125


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      .+|+|+.....           ..+....+.|++||.++..
T Consensus       214 ~~d~vi~~~g~-----------~~~~~~~~~l~~~G~~v~~  243 (333)
T 1v3u_A          214 GYDCYFDNVGG-----------EFLNTVLSQMKDFGKIAIC  243 (333)
T ss_dssp             CEEEEEESSCH-----------HHHHHHHTTEEEEEEEEEC
T ss_pred             CCeEEEECCCh-----------HHHHHHHHHHhcCCEEEEE
Confidence            79999765531           1366778899999998865

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=92.78  E-value=0.2  Score=42.40  Aligned_cols=98  Identities=11%  Similarity=0.041  Sum_probs=59.6

Q ss_pred             cCCCCeEEEEcCCC-CccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC-Cchhhhhcc--c--
Q 025775           29 SHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-ENFETQMQE--K--  102 (248)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~--~--  102 (248)
                      +.++.+||-+|+|. |..+..++...-.+|+++|.+++.++.+++.    +.   ...+.  ..+ .++.+.+..  .  
T Consensus       166 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga---~~~~~--~~~~~~~~~~i~~~~~~~  236 (352)
T 1e3j_A          166 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNC----GA---DVTLV--VDPAKEEESSIIERIRSA  236 (352)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----TC---SEEEE--CCTTTSCHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh----CC---CEEEc--CcccccHHHHHHHHhccc
Confidence            45899999999875 6556666654333699999999988877642    21   11222  121 222222211  1  


Q ss_pred             -CCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          103 -ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       103 -~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                       ...+|+|+.....          ...++...+.|+++|.++..
T Consensus       237 ~g~g~D~vid~~g~----------~~~~~~~~~~l~~~G~iv~~  270 (352)
T 1e3j_A          237 IGDLPNVTIDCSGN----------EKCITIGINITRTGGTLMLV  270 (352)
T ss_dssp             SSSCCSEEEECSCC----------HHHHHHHHHHSCTTCEEEEC
T ss_pred             cCCCCCEEEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence             2469999764421          12456677889999999876

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=92.75  E-value=0.78  Score=39.53  Aligned_cols=102  Identities=14%  Similarity=-0.001  Sum_probs=61.5

Q ss_pred             cCCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc--cCC
Q 025775           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (248)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~  104 (248)
                      +.++.+||=+|+|. |..+..++.. +..+|+++|.++.-++.+++.-.       ...+  |..+.++.+.+.+  ...
T Consensus       211 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa-------~~vi--~~~~~~~~~~i~~~t~g~  281 (404)
T 3ip1_A          211 IRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGA-------DHVI--DPTKENFVEAVLDYTNGL  281 (404)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTC-------SEEE--CTTTSCHHHHHHHHTTTC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC-------CEEE--cCCCCCHHHHHHHHhCCC
Confidence            45889999999875 5555566554 55589999999998888865421       1122  3333333332222  123


Q ss_pred             ceeEEEeccchhhhcCCH-HHHHHHHHHHhccccCCcEEEEE
Q 025775          105 QADLVCCFQHLQMCFETE-ERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~-~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      .+|+|+-...      .. .....+++.+.+.++++|.++..
T Consensus       282 g~D~vid~~g------~~~~~~~~~~~~l~~~~~~~G~iv~~  317 (404)
T 3ip1_A          282 GAKLFLEATG------VPQLVWPQIEEVIWRARGINATVAIV  317 (404)
T ss_dssp             CCSEEEECSS------CHHHHHHHHHHHHHHCSCCCCEEEEC
T ss_pred             CCCEEEECCC------CcHHHHHHHHHHHHhccCCCcEEEEe
Confidence            6999975432      22 12334444444666999999876

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=92.55  E-value=0.29  Score=40.91  Aligned_cols=96  Identities=16%  Similarity=0.122  Sum_probs=60.6

Q ss_pred             cCCCCeEEEEc-CC-CCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc--cC
Q 025775           29 SHPYVTVCDLY-CG-AGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KA  103 (248)
Q Consensus        29 ~~~~~~VLDlG-cG-~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~  103 (248)
                      +.++.+||=.| +| .|..+..++.. +. +|+++|.+++-++.+++.-  .     ...+  |..+.++.+.+.+  ..
T Consensus       138 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~G--a-----~~~~--~~~~~~~~~~~~~~~~~  207 (325)
T 3jyn_A          138 VKPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKALG--A-----WETI--DYSHEDVAKRVLELTDG  207 (325)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHT--C-----SEEE--ETTTSCHHHHHHHHTTT
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcC--C-----CEEE--eCCCccHHHHHHHHhCC
Confidence            35789999998 44 36555555554 55 8999999999888776431  1     1122  2233333322221  22


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      ..+|+|+.....           ..+....+.|+++|.++..
T Consensus       208 ~g~Dvvid~~g~-----------~~~~~~~~~l~~~G~iv~~  238 (325)
T 3jyn_A          208 KKCPVVYDGVGQ-----------DTWLTSLDSVAPRGLVVSF  238 (325)
T ss_dssp             CCEEEEEESSCG-----------GGHHHHHTTEEEEEEEEEC
T ss_pred             CCceEEEECCCh-----------HHHHHHHHHhcCCCEEEEE
Confidence            479999765432           2456678899999999876

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=92.41  E-value=0.69  Score=40.24  Aligned_cols=102  Identities=13%  Similarity=0.050  Sum_probs=65.7

Q ss_pred             CCeEEEEcCCC-CccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           32 YVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        32 ~~~VLDlGcG~-G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      +.+|+=+|+|. |..+...+......|+++|.+++.++.++.    .+    +..+.+|+++.......  .-...|+|+
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~----~g----~~vi~GDat~~~~L~~a--gi~~A~~vi   73 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRK----FG----MKVFYGDATRMDLLESA--GAAKAEVLI   73 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHH----TT----CCCEESCTTCHHHHHHT--TTTTCSEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHh----CC----CeEEEcCCCCHHHHHhc--CCCccCEEE
Confidence            45788899886 544444433333389999999999887763    22    55789999886654322  235788886


Q ss_pred             eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChh
Q 025775          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~  150 (248)
                      +..      .+. .....+....+.+.|+..++....+..
T Consensus        74 v~~------~~~-~~n~~i~~~ar~~~p~~~Iiara~~~~  106 (413)
T 3l9w_A           74 NAI------DDP-QTNLQLTEMVKEHFPHLQIIARARDVD  106 (413)
T ss_dssp             ECC------SSH-HHHHHHHHHHHHHCTTCEEEEEESSHH
T ss_pred             ECC------CCh-HHHHHHHHHHHHhCCCCeEEEEECCHH
Confidence            643      223 334445556667788888877755543

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=92.30  E-value=0.22  Score=41.87  Aligned_cols=96  Identities=17%  Similarity=0.128  Sum_probs=59.3

Q ss_pred             cCCCCeEEEEcCCC--CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc--cC
Q 025775           29 SHPYVTVCDLYCGA--GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KA  103 (248)
Q Consensus        29 ~~~~~~VLDlGcG~--G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~  103 (248)
                      +.++.+||-+|+|.  |..+..++.. +. +|+++|.+++.++.+++.  +.     ...+  |..+.++.+.+..  ..
T Consensus       142 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~l--ga-----~~~~--~~~~~~~~~~~~~~~~~  211 (340)
T 3gms_A          142 LQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLRL--GA-----AYVI--DTSTAPLYETVMELTNG  211 (340)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHH--TC-----SEEE--ETTTSCHHHHHHHHTTT
T ss_pred             cCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhC--CC-----cEEE--eCCcccHHHHHHHHhCC
Confidence            45889999999984  5555555554 55 899999999988887753  11     1122  2333333322221  13


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      ..+|+|+......       ..    ....+.|+++|.++..
T Consensus       212 ~g~Dvvid~~g~~-------~~----~~~~~~l~~~G~iv~~  242 (340)
T 3gms_A          212 IGADAAIDSIGGP-------DG----NELAFSLRPNGHFLTI  242 (340)
T ss_dssp             SCEEEEEESSCHH-------HH----HHHHHTEEEEEEEEEC
T ss_pred             CCCcEEEECCCCh-------hH----HHHHHHhcCCCEEEEE
Confidence            4799997644221       12    2233789999999876

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=92.18  E-value=0.33  Score=40.92  Aligned_cols=96  Identities=16%  Similarity=0.098  Sum_probs=60.2

Q ss_pred             CCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc--cCCce
Q 025775           31 PYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQA  106 (248)
Q Consensus        31 ~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~f  106 (248)
                      ++.+||-+|+|. |..+..++.. +..+|+++|.+++-++.+++.    +    +.. ..|..+.++.+.+.+  ....+
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~----G----a~~-~~~~~~~~~~~~v~~~~~g~g~  237 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKV----G----ADY-VINPFEEDVVKEVMDITDGNGV  237 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHH----T----CSE-EECTTTSCHHHHHHHHTTTSCE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----C----CCE-EECCCCcCHHHHHHHHcCCCCC
Confidence            788999999964 5555566554 444899999999888777642    1    111 123333333332221  12369


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      |+|+.....          ...++.+.+.|+++|.++..
T Consensus       238 D~vid~~g~----------~~~~~~~~~~l~~~G~iv~~  266 (348)
T 2d8a_A          238 DVFLEFSGA----------PKALEQGLQAVTPAGRVSLL  266 (348)
T ss_dssp             EEEEECSCC----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             CEEEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence            999764421          13456677889999998875

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=92.12  E-value=0.27  Score=41.78  Aligned_cols=97  Identities=13%  Similarity=-0.042  Sum_probs=60.7

Q ss_pred             cCCCCeEEEEcCCC-CccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc--cCCc
Q 025775           29 SHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQ  105 (248)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~  105 (248)
                      +.++.+||=+|+|. |..+..+++....+|+++|.+++-++.+++.-.       ...+..  ...++.+.+..  ....
T Consensus       187 ~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa-------~~vi~~--~~~~~~~~v~~~~~g~g  257 (363)
T 3uog_A          187 LRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGA-------DHGINR--LEEDWVERVYALTGDRG  257 (363)
T ss_dssp             CCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTC-------SEEEET--TTSCHHHHHHHHHTTCC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCC-------CEEEcC--CcccHHHHHHHHhCCCC
Confidence            45889999999875 665666665533499999999998887765311       112221  11233222211  2347


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +|+|+....-           ..+..+.+.|+++|.++..
T Consensus       258 ~D~vid~~g~-----------~~~~~~~~~l~~~G~iv~~  286 (363)
T 3uog_A          258 ADHILEIAGG-----------AGLGQSLKAVAPDGRISVI  286 (363)
T ss_dssp             EEEEEEETTS-----------SCHHHHHHHEEEEEEEEEE
T ss_pred             ceEEEECCCh-----------HHHHHHHHHhhcCCEEEEE
Confidence            9999765431           1355667789999999876

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=92.09  E-value=0.25  Score=41.70  Aligned_cols=98  Identities=16%  Similarity=0.217  Sum_probs=60.1

Q ss_pred             cCCCCeEEEEcCCC--CccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc-cC-
Q 025775           29 SHPYVTVCDLYCGA--GVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KA-  103 (248)
Q Consensus        29 ~~~~~~VLDlGcG~--G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~-  103 (248)
                      +.++.+||-.|+|.  |..+..++... -.+|+++|.+++.++.+++.  ..     ...+  |..+.+....+.. .. 
T Consensus       168 ~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~--g~-----~~~~--~~~~~~~~~~~~~~~~~  238 (347)
T 1jvb_A          168 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA--GA-----DYVI--NASMQDPLAEIRRITES  238 (347)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH--TC-----SEEE--ETTTSCHHHHHHHHTTT
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh--CC-----CEEe--cCCCccHHHHHHHHhcC
Confidence            45889999999984  44444444432 34899999999888877542  11     1122  2323333211111 12 


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +.+|+|+.....          ...++.+.+.|+++|.++..
T Consensus       239 ~~~d~vi~~~g~----------~~~~~~~~~~l~~~G~iv~~  270 (347)
T 1jvb_A          239 KGVDAVIDLNNS----------EKTLSVYPKALAKQGKYVMV  270 (347)
T ss_dssp             SCEEEEEESCCC----------HHHHTTGGGGEEEEEEEEEC
T ss_pred             CCceEEEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence            579999765421          23567788899999998875

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=92.01  E-value=0.36  Score=40.58  Aligned_cols=97  Identities=14%  Similarity=0.101  Sum_probs=60.4

Q ss_pred             cCCCCeEEEEcC--CCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc--cCC
Q 025775           29 SHPYVTVCDLYC--GAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (248)
Q Consensus        29 ~~~~~~VLDlGc--G~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~  104 (248)
                      +.++.+||-.|+  |.|..+..++.....+|+++|.+++.++.+++.  +.     ...  .|..+.++.+.+..  ...
T Consensus       164 ~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~--ga-----~~~--~d~~~~~~~~~~~~~~~~~  234 (343)
T 2eih_A          164 VRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKAL--GA-----DET--VNYTHPDWPKEVRRLTGGK  234 (343)
T ss_dssp             CCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH--TC-----SEE--EETTSTTHHHHHHHHTTTT
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhc--CC-----CEE--EcCCcccHHHHHHHHhCCC
Confidence            347899999998  346555555554334899999999988877542  11     111  23333333222221  124


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      .+|+|+.... .          ..++.+.+.|+++|.++..
T Consensus       235 ~~d~vi~~~g-~----------~~~~~~~~~l~~~G~~v~~  264 (343)
T 2eih_A          235 GADKVVDHTG-A----------LYFEGVIKATANGGRIAIA  264 (343)
T ss_dssp             CEEEEEESSC-S----------SSHHHHHHHEEEEEEEEES
T ss_pred             CceEEEECCC-H----------HHHHHHHHhhccCCEEEEE
Confidence            7999977654 1          1356667788999998865

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=91.95  E-value=0.53  Score=40.01  Aligned_cols=95  Identities=12%  Similarity=0.106  Sum_probs=60.7

Q ss_pred             CCCeEEEEc-CCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc-cCCce
Q 025775           31 PYVTVCDLY-CGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQA  106 (248)
Q Consensus        31 ~~~~VLDlG-cG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~f  106 (248)
                      ++.+||=+| +|. |..+..+++. ...+|+++|.+++-++.+++.    +.   ...+  |..+ ++.+.+.+ ..+.+
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~l----Ga---d~vi--~~~~-~~~~~v~~~~~~g~  240 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSL----GA---HHVI--DHSK-PLAAEVAALGLGAP  240 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHT----TC---SEEE--CTTS-CHHHHHHTTCSCCE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHc----CC---CEEE--eCCC-CHHHHHHHhcCCCc
Confidence            678899998 664 7777777765 456999999999888877642    21   1122  2222 23222221 23579


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      |+|+....          ....++.+.++|+++|.++..
T Consensus       241 Dvvid~~g----------~~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          241 AFVFSTTH----------TDKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             EEEEECSC----------HHHHHHHHHHHSCTTCEEEEC
T ss_pred             eEEEECCC----------chhhHHHHHHHhcCCCEEEEE
Confidence            99875332          123567778899999999875

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=91.70  E-value=1.3  Score=31.70  Aligned_cols=100  Identities=15%  Similarity=0.103  Sum_probs=58.3

Q ss_pred             CCeEEEEcCCC-CccHh-HHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           32 YVTVCDLYCGA-GVDVD-KWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        32 ~~~VLDlGcG~-G~~~~-~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      ..+|+=+|||. |..+. .+...+. +|+++|.+++.++.++.    .+    ..++.+|..+.......  ....+|+|
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~~~~~~~~~~----~~----~~~~~gd~~~~~~l~~~--~~~~~d~v   74 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKSKEKIELLED----EG----FDAVIADPTDESFYRSL--DLEGVSAV   74 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHH----TT----CEEEECCTTCHHHHHHS--CCTTCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHH----CC----CcEEECCCCCHHHHHhC--CcccCCEE
Confidence            45789999975 33332 3333455 89999999988776653    22    56788998775543222  23468988


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChh
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~  150 (248)
                      ++...      +.+ ....+....+.+. ...++....+..
T Consensus        75 i~~~~------~~~-~n~~~~~~a~~~~-~~~iia~~~~~~  107 (141)
T 3llv_A           75 LITGS------DDE-FNLKILKALRSVS-DVYAIVRVSSPK  107 (141)
T ss_dssp             EECCS------CHH-HHHHHHHHHHHHC-CCCEEEEESCGG
T ss_pred             EEecC------CHH-HHHHHHHHHHHhC-CceEEEEEcChh
Confidence            76442      222 2223333444455 566666655553

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=91.69  E-value=0.39  Score=41.02  Aligned_cols=100  Identities=15%  Similarity=0.171  Sum_probs=61.3

Q ss_pred             cCCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc-cCCc
Q 025775           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ  105 (248)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~  105 (248)
                      +.++.+||=+|+|. |..+..+++. +..+|+++|.+++-++.+++.    +.   ...+...-...++.+.+.+ ..+.
T Consensus       191 ~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~l----Ga---~~vi~~~~~~~~~~~~i~~~~~gg  263 (378)
T 3uko_A          191 VEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKF----GV---NEFVNPKDHDKPIQEVIVDLTDGG  263 (378)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTT----TC---CEEECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CC---cEEEccccCchhHHHHHHHhcCCC
Confidence            45889999999875 6656666554 555899999999988877642    21   1122111002223222211 2347


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHhccccCC-cEEEEE
Q 025775          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG-GYFLGI  145 (248)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkpg-G~~i~~  145 (248)
                      +|+|+-...      .    ...++.+.+.|++| |.++..
T Consensus       264 ~D~vid~~g------~----~~~~~~~~~~l~~g~G~iv~~  294 (378)
T 3uko_A          264 VDYSFECIG------N----VSVMRAALECCHKGWGTSVIV  294 (378)
T ss_dssp             BSEEEECSC------C----HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCEEEECCC------C----HHHHHHHHHHhhccCCEEEEE
Confidence            999975432      1    23567778899997 998876

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=91.63  E-value=0.63  Score=39.56  Aligned_cols=98  Identities=14%  Similarity=0.151  Sum_probs=60.8

Q ss_pred             cCCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC--Cchhhhhcc-cC
Q 025775           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA--ENFETQMQE-KA  103 (248)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~-~~  103 (248)
                      +.++.+||-+|+|. |..+..++.. +..+|+++|.+++.++.+++.-.       ...+  |..+  .++.+.+.. ..
T Consensus       188 ~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa-------~~vi--~~~~~~~~~~~~v~~~~~  258 (373)
T 2fzw_A          188 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGA-------TECI--NPQDFSKPIQEVLIEMTD  258 (373)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTC-------SEEE--CGGGCSSCHHHHHHHHTT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC-------ceEe--ccccccccHHHHHHHHhC
Confidence            45889999999875 5555566554 55589999999998888764311       1112  2211  222222211 12


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHhccccCC-cEEEEE
Q 025775          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG-GYFLGI  145 (248)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkpg-G~~i~~  145 (248)
                      +.+|+|+.....          ...++.+.+.|+++ |.++..
T Consensus       259 ~g~D~vid~~g~----------~~~~~~~~~~l~~~~G~iv~~  291 (373)
T 2fzw_A          259 GGVDYSFECIGN----------VKVMRAALEACHKGWGVSVVV  291 (373)
T ss_dssp             SCBSEEEECSCC----------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCCCEEEECCCc----------HHHHHHHHHhhccCCcEEEEE
Confidence            479999754321          23466778899999 998875

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=91.61  E-value=0.52  Score=40.09  Aligned_cols=98  Identities=15%  Similarity=0.081  Sum_probs=60.9

Q ss_pred             cCCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC--Cchhhhhcc-cC
Q 025775           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA--ENFETQMQE-KA  103 (248)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~-~~  103 (248)
                      +.++.+||-+|+|. |..+..+++. +..+|+++|.+++-++.+++.    +.   ...+  |..+  .++.+.+.. ..
T Consensus       189 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga---~~vi--~~~~~~~~~~~~i~~~t~  259 (373)
T 1p0f_A          189 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL----GA---TECL--NPKDYDKPIYEVICEKTN  259 (373)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT----TC---SEEE--CGGGCSSCHHHHHHHHTT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CC---cEEE--ecccccchHHHHHHHHhC
Confidence            45889999999875 6555666554 555899999999988877642    20   1122  2211  223222211 12


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHhccccCC-cEEEEE
Q 025775          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG-GYFLGI  145 (248)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkpg-G~~i~~  145 (248)
                      +.+|+|+.....          ...++...+.|+++ |.++..
T Consensus       260 gg~Dvvid~~g~----------~~~~~~~~~~l~~~~G~iv~~  292 (373)
T 1p0f_A          260 GGVDYAVECAGR----------IETMMNALQSTYCGSGVTVVL  292 (373)
T ss_dssp             SCBSEEEECSCC----------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCCCEEEECCCC----------HHHHHHHHHHHhcCCCEEEEE
Confidence            479999754321          23466778899999 998865

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=91.60  E-value=0.43  Score=41.06  Aligned_cols=107  Identities=15%  Similarity=0.067  Sum_probs=63.1

Q ss_pred             cCCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCc-hhhhhcc--cC
Q 025775           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN-FETQMQE--KA  103 (248)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~--~~  103 (248)
                      +.++.+||-+|||. |..+..+++. +...|+++|.+++-++.+++.    +    +..+  |..+.+ +.+.+..  ..
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~l----G----a~~i--~~~~~~~~~~~v~~~t~g  252 (398)
T 1kol_A          183 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----G----FEIA--DLSLDTPLHEQIAALLGE  252 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----T----CEEE--ETTSSSCHHHHHHHHHSS
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHc----C----CcEE--ccCCcchHHHHHHHHhCC
Confidence            45889999999876 6666666665 555799999999988877542    2    2222  222211 2222211  12


Q ss_pred             CceeEEEeccchhhhc-----CCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          104 NQADLVCCFQHLQMCF-----ETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       104 ~~fD~V~~~~~l~~~~-----~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      ..+|+|+-........     .+.......++...++|++||.++..
T Consensus       253 ~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~  299 (398)
T 1kol_A          253 PEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP  299 (398)
T ss_dssp             SCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred             CCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEe
Confidence            4699997644321000     00001123567778899999998765

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=91.42  E-value=0.32  Score=40.76  Aligned_cols=98  Identities=10%  Similarity=-0.039  Sum_probs=61.1

Q ss_pred             cCCCCeEEEEcCC--CCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc-cCCc
Q 025775           29 SHPYVTVCDLYCG--AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ  105 (248)
Q Consensus        29 ~~~~~~VLDlGcG--~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~  105 (248)
                      +.++.+||-.|++  .|..+..++...-.+|+++|.+++-++.+.+.+   +    +. ...|..+.++...+.. ..+.
T Consensus       147 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~---g----~~-~~~~~~~~~~~~~~~~~~~~~  218 (336)
T 4b7c_A          147 PKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEEL---G----FD-GAIDYKNEDLAAGLKRECPKG  218 (336)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTT---C----CS-EEEETTTSCHHHHHHHHCTTC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc---C----CC-EEEECCCHHHHHHHHHhcCCC
Confidence            4589999999983  365555555543339999999998877663222   2    11 1123333333322211 2357


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +|+|+....       .    ..+..+.+.|+++|.++..
T Consensus       219 ~d~vi~~~g-------~----~~~~~~~~~l~~~G~iv~~  247 (336)
T 4b7c_A          219 IDVFFDNVG-------G----EILDTVLTRIAFKARIVLC  247 (336)
T ss_dssp             EEEEEESSC-------H----HHHHHHHTTEEEEEEEEEC
T ss_pred             ceEEEECCC-------c----chHHHHHHHHhhCCEEEEE
Confidence            999976442       1    2567788899999999875

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=91.31  E-value=0.7  Score=39.08  Aligned_cols=96  Identities=14%  Similarity=0.076  Sum_probs=60.6

Q ss_pred             cCCC------CeEEEEcCCC-CccH-hHHH-Hc-CCCeEEEEeCChH---HHHHHHHHHHhcCCCceEEEEEcCCCCCch
Q 025775           29 SHPY------VTVCDLYCGA-GVDV-DKWE-TA-LIANYIGIDVATS---GIGEARDTWENQRKNFIAEFFEADPCAENF   95 (248)
Q Consensus        29 ~~~~------~~VLDlGcG~-G~~~-~~l~-~~-~~~~v~giDis~~---~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~   95 (248)
                      +.++      .+||=+|+|. |..+ ..++ +. +..+|+++|.+++   -++.+++.    +    +..+  |..+.++
T Consensus       164 ~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~l----G----a~~v--~~~~~~~  233 (357)
T 2b5w_A          164 ASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEEL----D----ATYV--DSRQTPV  233 (357)
T ss_dssp             HTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHT----T----CEEE--ETTTSCG
T ss_pred             CCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHc----C----Cccc--CCCccCH
Confidence            4578      9999999865 6666 6666 44 5545999999987   77776532    2    2223  4433333


Q ss_pred             hhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775           96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus        96 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      .+ +....+.+|+|+-...      ..    ..++.+.+.|+++|.++..
T Consensus       234 ~~-i~~~~gg~Dvvid~~g------~~----~~~~~~~~~l~~~G~iv~~  272 (357)
T 2b5w_A          234 ED-VPDVYEQMDFIYEATG------FP----KHAIQSVQALAPNGVGALL  272 (357)
T ss_dssp             GG-HHHHSCCEEEEEECSC------CH----HHHHHHHHHEEEEEEEEEC
T ss_pred             HH-HHHhCCCCCEEEECCC------Ch----HHHHHHHHHHhcCCEEEEE
Confidence            32 2111237999975432      11    2456677889999998876

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=91.30  E-value=0.54  Score=39.59  Aligned_cols=91  Identities=16%  Similarity=0.107  Sum_probs=59.8

Q ss_pred             hcCCCCeEEEEcCCC-CccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           28 YSHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        28 ~~~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      -+.++.+||-+|+|. |..+..+++....+|+++|.+++-++.+++.    +.   ...+ .+.  ..+       ...+
T Consensus       173 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga---~~v~-~~~--~~~-------~~~~  235 (348)
T 3two_A          173 KVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSM----GV---KHFY-TDP--KQC-------KEEL  235 (348)
T ss_dssp             TCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHT----TC---SEEE-SSG--GGC-------CSCE
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhc----CC---Ceec-CCH--HHH-------hcCC
Confidence            356899999999875 6666666665334999999999988877652    21   1122 221  111       2379


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      |+|+....-.          ..++...+.|+++|.++..
T Consensus       236 D~vid~~g~~----------~~~~~~~~~l~~~G~iv~~  264 (348)
T 3two_A          236 DFIISTIPTH----------YDLKDYLKLLTYNGDLALV  264 (348)
T ss_dssp             EEEEECCCSC----------CCHHHHHTTEEEEEEEEEC
T ss_pred             CEEEECCCcH----------HHHHHHHHHHhcCCEEEEE
Confidence            9997644221          1356677899999999876

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=91.22  E-value=0.43  Score=39.90  Aligned_cols=97  Identities=13%  Similarity=0.088  Sum_probs=59.7

Q ss_pred             cCCCCeEEEEcC-C-CCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc--cCC
Q 025775           29 SHPYVTVCDLYC-G-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (248)
Q Consensus        29 ~~~~~~VLDlGc-G-~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~  104 (248)
                      +.++.+||-.|+ | -|..+..++.....+|+++|.+++-++.+++.    +.   ...+  |..+.++...+..  ...
T Consensus       146 ~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----ga---~~~~--~~~~~~~~~~~~~~~~~~  216 (334)
T 3qwb_A          146 VKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEY----GA---EYLI--NASKEDILRQVLKFTNGK  216 (334)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TC---SEEE--ETTTSCHHHHHHHHTTTS
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CC---cEEE--eCCCchHHHHHHHHhCCC
Confidence            458899999994 3 35555555554334899999999888876542    10   1122  2223333322221  134


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      .+|+|+....-           ..++.+.+.|++||.++..
T Consensus       217 g~D~vid~~g~-----------~~~~~~~~~l~~~G~iv~~  246 (334)
T 3qwb_A          217 GVDASFDSVGK-----------DTFEISLAALKRKGVFVSF  246 (334)
T ss_dssp             CEEEEEECCGG-----------GGHHHHHHHEEEEEEEEEC
T ss_pred             CceEEEECCCh-----------HHHHHHHHHhccCCEEEEE
Confidence            69999765432           2356677789999998875

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=91.21  E-value=0.35  Score=40.95  Aligned_cols=97  Identities=14%  Similarity=0.088  Sum_probs=58.5

Q ss_pred             cCCCCeEEEEcCC--CCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc--cCC
Q 025775           29 SHPYVTVCDLYCG--AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (248)
Q Consensus        29 ~~~~~~VLDlGcG--~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~  104 (248)
                      +.++.+||-.|++  .|..+..++.....+|+++|.+++.++.+++.    +.   ...  .|..+.++.+.+..  ...
T Consensus       168 ~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----ga---~~~--~d~~~~~~~~~~~~~~~~~  238 (351)
T 1yb5_A          168 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQN----GA---HEV--FNHREVNYIDKIKKYVGEK  238 (351)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TC---SEE--EETTSTTHHHHHHHHHCTT
T ss_pred             CCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHc----CC---CEE--EeCCCchHHHHHHHHcCCC
Confidence            4578999999973  35555555554334899999999887766432    21   111  23333333222211  134


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      .+|+|+....-           ..+....+.|+++|.++..
T Consensus       239 ~~D~vi~~~G~-----------~~~~~~~~~l~~~G~iv~~  268 (351)
T 1yb5_A          239 GIDIIIEMLAN-----------VNLSKDLSLLSHGGRVIVV  268 (351)
T ss_dssp             CEEEEEESCHH-----------HHHHHHHHHEEEEEEEEEC
T ss_pred             CcEEEEECCCh-----------HHHHHHHHhccCCCEEEEE
Confidence            79999765421           1355677899999998875

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=91.16  E-value=0.26  Score=42.19  Aligned_cols=100  Identities=19%  Similarity=0.111  Sum_probs=60.0

Q ss_pred             cCCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCC-CCchhhhhcc--cC
Q 025775           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPC-AENFETQMQE--KA  103 (248)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~--~~  103 (248)
                      +.++.+||-+|+|. |..+..++.. +..+|+++|.+++-++.+++.    +.   ...+..+.. +.++.+.+..  ..
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l----Ga---~~vi~~~~~~~~~~~~~v~~~~~g  265 (380)
T 1vj0_A          193 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI----GA---DLTLNRRETSVEERRKAIMDITHG  265 (380)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT----TC---SEEEETTTSCHHHHHHHHHHHTTT
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHc----CC---cEEEeccccCcchHHHHHHHHhCC
Confidence            45789999999774 5555666655 435999999999888877632    21   112222100 1222222211  12


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      ..+|+|+.....          ...++...+.|+++|.++..
T Consensus       266 ~g~Dvvid~~g~----------~~~~~~~~~~l~~~G~iv~~  297 (380)
T 1vj0_A          266 RGADFILEATGD----------SRALLEGSELLRRGGFYSVA  297 (380)
T ss_dssp             SCEEEEEECSSC----------TTHHHHHHHHEEEEEEEEEC
T ss_pred             CCCcEEEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence            369999764421          12456677889999998875

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=91.04  E-value=0.32  Score=41.04  Aligned_cols=98  Identities=12%  Similarity=0.005  Sum_probs=60.6

Q ss_pred             cCCCCeEEEEcCC--CCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCC-CCchhhhhcc-cCC
Q 025775           29 SHPYVTVCDLYCG--AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPC-AENFETQMQE-KAN  104 (248)
Q Consensus        29 ~~~~~~VLDlGcG--~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~-~~~  104 (248)
                      +.++.+||-+|++  .|..+..++.....+|+++|.+++.++.+++.    +    ... ..|.. ..++...+.. ..+
T Consensus       167 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~----g----~~~-~~d~~~~~~~~~~~~~~~~~  237 (347)
T 2hcy_A          167 LMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSI----G----GEV-FIDFTKEKDIVGAVLKATDG  237 (347)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHT----T----CCE-EEETTTCSCHHHHHHHHHTS
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHc----C----Cce-EEecCccHhHHHHHHHHhCC
Confidence            4588999999983  45555555554334999999998887766542    2    111 12443 2333222211 122


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      .+|+|+.....          ...++.+.+.|+++|.++..
T Consensus       238 ~~D~vi~~~g~----------~~~~~~~~~~l~~~G~iv~~  268 (347)
T 2hcy_A          238 GAHGVINVSVS----------EAAIEASTRYVRANGTTVLV  268 (347)
T ss_dssp             CEEEEEECSSC----------HHHHHHHTTSEEEEEEEEEC
T ss_pred             CCCEEEECCCc----------HHHHHHHHHHHhcCCEEEEE
Confidence            79999765431          23567788999999998865

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=90.86  E-value=0.6  Score=39.15  Aligned_cols=98  Identities=13%  Similarity=0.076  Sum_probs=59.8

Q ss_pred             cCCCCeEEEEcC-C-CCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCC-chhhhhcc-cCC
Q 025775           29 SHPYVTVCDLYC-G-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE-NFETQMQE-KAN  104 (248)
Q Consensus        29 ~~~~~~VLDlGc-G-~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~-~~~  104 (248)
                      +.++.+||-.|+ | .|..+..++.....+|+++|.+++.++.+++.+   +.   ...+  |..+. ++...+.. ..+
T Consensus       153 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~---g~---~~~~--d~~~~~~~~~~~~~~~~~  224 (345)
T 2j3h_A          153 PKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKF---GF---DDAF--NYKEESDLTAALKRCFPN  224 (345)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTS---CC---SEEE--ETTSCSCSHHHHHHHCTT
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc---CC---ceEE--ecCCHHHHHHHHHHHhCC
Confidence            457899999997 3 465555555543348999999998877765322   21   1112  33221 22222211 125


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      .+|+|+.....           ..++...+.|++||.++..
T Consensus       225 ~~d~vi~~~g~-----------~~~~~~~~~l~~~G~~v~~  254 (345)
T 2j3h_A          225 GIDIYFENVGG-----------KMLDAVLVNMNMHGRIAVC  254 (345)
T ss_dssp             CEEEEEESSCH-----------HHHHHHHTTEEEEEEEEEC
T ss_pred             CCcEEEECCCH-----------HHHHHHHHHHhcCCEEEEE
Confidence            69999765421           2567788899999998875

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=90.67  E-value=0.66  Score=39.48  Aligned_cols=98  Identities=15%  Similarity=0.137  Sum_probs=60.7

Q ss_pred             cCCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC--Cchhhhhcc-cC
Q 025775           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA--ENFETQMQE-KA  103 (248)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~-~~  103 (248)
                      +.++.+||-+|+|. |..+..++.. +..+|+++|.+++.++.+++.    +.   ...+  |..+  .++.+.+.. ..
T Consensus       190 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga---~~vi--~~~~~~~~~~~~~~~~~~  260 (374)
T 1cdo_A          190 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF----GA---TDFV--NPNDHSEPISQVLSKMTN  260 (374)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TC---CEEE--CGGGCSSCHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh----CC---ceEE--eccccchhHHHHHHHHhC
Confidence            45889999999875 5556666654 444899999999988877642    20   1112  2221  223222211 12


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHhccccCC-cEEEEE
Q 025775          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG-GYFLGI  145 (248)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkpg-G~~i~~  145 (248)
                      +.+|+|+.....          ...++.+.+.|+++ |.++..
T Consensus       261 ~g~D~vid~~g~----------~~~~~~~~~~l~~~~G~iv~~  293 (374)
T 1cdo_A          261 GGVDFSLECVGN----------VGVMRNALESCLKGWGVSVLV  293 (374)
T ss_dssp             SCBSEEEECSCC----------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCCCEEEECCCC----------HHHHHHHHHHhhcCCcEEEEE
Confidence            479999754321          23466778899999 998875

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=90.56  E-value=0.23  Score=41.84  Aligned_cols=95  Identities=15%  Similarity=0.027  Sum_probs=58.3

Q ss_pred             CCCeEEEEcCCC-CccHhHHHHcC--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC-CchhhhhcccCCce
Q 025775           31 PYVTVCDLYCGA-GVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-ENFETQMQEKANQA  106 (248)
Q Consensus        31 ~~~~VLDlGcG~-G~~~~~l~~~~--~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~f  106 (248)
                      ++.+||-+|+|. |..+..++...  -.+|+++|.+++-++.+++.-  .     ...+  |..+ .+....+. ....+
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lG--a-----~~vi--~~~~~~~~~~~~~-~g~g~  239 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELG--A-----DYVS--EMKDAESLINKLT-DGLGA  239 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHT--C-----SEEE--CHHHHHHHHHHHH-TTCCE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhC--C-----CEEe--ccccchHHHHHhh-cCCCc
Confidence            899999999974 55555665543  348999999999888776531  1     1111  1111 11111121 12379


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      |+|+.....          ...++.+.+.|+++|.++..
T Consensus       240 D~vid~~g~----------~~~~~~~~~~l~~~G~iv~~  268 (344)
T 2h6e_A          240 SIAIDLVGT----------EETTYNLGKLLAQEGAIILV  268 (344)
T ss_dssp             EEEEESSCC----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             cEEEECCCC----------hHHHHHHHHHhhcCCEEEEe
Confidence            999764421          12466677889999998875

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=90.17  E-value=1.1  Score=37.77  Aligned_cols=95  Identities=16%  Similarity=0.127  Sum_probs=58.4

Q ss_pred             CCCeEEEE-cCCC-CccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc-cCCcee
Q 025775           31 PYVTVCDL-YCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQAD  107 (248)
Q Consensus        31 ~~~~VLDl-GcG~-G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~fD  107 (248)
                      ++.+||=+ |+|. |..+..++...-.+|+++|.+++-++.+++.-  .     ...+  |..+ ++.+.+.. ....+|
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lG--a-----~~vi--~~~~-~~~~~~~~~~~~g~D  219 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMG--A-----DIVL--NHKE-SLLNQFKTQGIELVD  219 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHT--C-----SEEE--CTTS-CHHHHHHHHTCCCEE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcC--C-----cEEE--ECCc-cHHHHHHHhCCCCcc
Confidence            78899999 4554 65556665553349999999998888777531  1     1122  2222 23222211 245799


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +|+....          ....++.+.++|+++|.++..
T Consensus       220 vv~d~~g----------~~~~~~~~~~~l~~~G~iv~~  247 (346)
T 3fbg_A          220 YVFCTFN----------TDMYYDDMIQLVKPRGHIATI  247 (346)
T ss_dssp             EEEESSC----------HHHHHHHHHHHEEEEEEEEES
T ss_pred             EEEECCC----------chHHHHHHHHHhccCCEEEEE
Confidence            9976432          123566777899999999764

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=90.11  E-value=0.72  Score=39.22  Aligned_cols=98  Identities=16%  Similarity=0.146  Sum_probs=60.3

Q ss_pred             cCCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC--Cchhhhhcc-cC
Q 025775           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA--ENFETQMQE-KA  103 (248)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~-~~  103 (248)
                      +.++.+||-+|+|. |..+..++.. +..+|+++|.+++.++.+++.    +.   ...+  |..+  .++.+.+.. ..
T Consensus       189 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga---~~vi--~~~~~~~~~~~~~~~~~~  259 (374)
T 2jhf_A          189 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV----GA---TECV--NPQDYKKPIQEVLTEMSN  259 (374)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TC---SEEE--CGGGCSSCHHHHHHHHTT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CC---ceEe--cccccchhHHHHHHHHhC
Confidence            45889999999875 6556666654 444899999999988877542    10   1112  2221  223222211 12


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHhccccCC-cEEEEE
Q 025775          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG-GYFLGI  145 (248)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkpg-G~~i~~  145 (248)
                      +.+|+|+....      .    ...++...+.|+++ |.++..
T Consensus       260 ~g~D~vid~~g------~----~~~~~~~~~~l~~~~G~iv~~  292 (374)
T 2jhf_A          260 GGVDFSFEVIG------R----LDTMVTALSCCQEAYGVSVIV  292 (374)
T ss_dssp             SCBSEEEECSC------C----HHHHHHHHHHBCTTTCEEEEC
T ss_pred             CCCcEEEECCC------C----HHHHHHHHHHhhcCCcEEEEe
Confidence            47999875432      1    13456677889999 998875

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=90.05  E-value=0.81  Score=38.94  Aligned_cols=98  Identities=16%  Similarity=0.135  Sum_probs=60.4

Q ss_pred             cCCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC--Cchhhhhcc-cC
Q 025775           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA--ENFETQMQE-KA  103 (248)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~-~~  103 (248)
                      +.++.+||-+|+|. |..+..+++. +..+|+++|.+++-++.+++.    +.   ...+  |..+  .++.+.+.. ..
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga---~~vi--~~~~~~~~~~~~v~~~~~  263 (376)
T 1e3i_A          193 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL----GA---TDCL--NPRELDKPVQDVITELTA  263 (376)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TC---SEEE--CGGGCSSCHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CC---cEEE--ccccccchHHHHHHHHhC
Confidence            34789999999875 6556666654 444899999999988877642    10   1112  2221  222222211 12


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHhccccCC-cEEEEE
Q 025775          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG-GYFLGI  145 (248)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkpg-G~~i~~  145 (248)
                      +.+|+|+-...      .    ...++.+.+.|+++ |.++..
T Consensus       264 ~g~Dvvid~~G------~----~~~~~~~~~~l~~~~G~iv~~  296 (376)
T 1e3i_A          264 GGVDYSLDCAG------T----AQTLKAAVDCTVLGWGSCTVV  296 (376)
T ss_dssp             SCBSEEEESSC------C----HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCccEEEECCC------C----HHHHHHHHHHhhcCCCEEEEE
Confidence            47999975432      1    23466778899999 998865

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=90.02  E-value=0.63  Score=39.35  Aligned_cols=97  Identities=11%  Similarity=-0.061  Sum_probs=58.3

Q ss_pred             cCCCCeEEEEcC-C-CCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc--cCC
Q 025775           29 SHPYVTVCDLYC-G-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (248)
Q Consensus        29 ~~~~~~VLDlGc-G-~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~  104 (248)
                      +.++.+||-.|+ | .|..+..++.....+|+++|.+++.++.+++.    +    .. ...|..+.++.+.+..  ...
T Consensus       160 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----g----~~-~~~~~~~~~~~~~~~~~~~~~  230 (354)
T 2j8z_A          160 VQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKL----G----AA-AGFNYKKEDFSEATLKFTKGA  230 (354)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----T----CS-EEEETTTSCHHHHHHHHTTTS
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----C----Cc-EEEecCChHHHHHHHHHhcCC
Confidence            347899999984 3 35555555544334899999999888877432    1    11 1123333333222211  124


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      .+|+|+......           .+....+.|+++|.++..
T Consensus       231 ~~d~vi~~~G~~-----------~~~~~~~~l~~~G~iv~~  260 (354)
T 2j8z_A          231 GVNLILDCIGGS-----------YWEKNVNCLALDGRWVLY  260 (354)
T ss_dssp             CEEEEEESSCGG-----------GHHHHHHHEEEEEEEEEC
T ss_pred             CceEEEECCCch-----------HHHHHHHhccCCCEEEEE
Confidence            699987655321           245567789999998876

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=89.99  E-value=3.5  Score=32.79  Aligned_cols=109  Identities=13%  Similarity=0.047  Sum_probs=66.4

Q ss_pred             CCCeEEEEcCCCCc---cHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh----hcccC
Q 025775           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQEKA  103 (248)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~~  103 (248)
                      .+.++|=.|++.|-   .+..++..+. +|+.+|.+++.++...+...     .++.++++|+.+..-...    ..+..
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEFG-----PRVHALRSDIADLNEIAVLGAAAGQTL   80 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC-----CcceEEEccCCCHHHHHHHHHHHHHHh
Confidence            46778888876542   2233444465 89999999988877665542     238899999987432111    11123


Q ss_pred             CceeEEEeccchhhh----cCCHHHHH-----------HHHHHHhccccCCcEEEEE
Q 025775          104 NQADLVCCFQHLQMC----FETEERAR-----------RLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       104 ~~fD~V~~~~~l~~~----~~~~~~~~-----------~~l~~~~~~LkpgG~~i~~  145 (248)
                      ++.|+++........    -.+.++.+           .+++.+...++++|.++..
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~i  137 (255)
T 4eso_A           81 GAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFT  137 (255)
T ss_dssp             SSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEE
Confidence            579998876543211    01333333           3455667777788888776

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=89.94  E-value=0.39  Score=40.43  Aligned_cols=98  Identities=16%  Similarity=0.141  Sum_probs=62.2

Q ss_pred             hcCCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc--cC
Q 025775           28 YSHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KA  103 (248)
Q Consensus        28 ~~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~  103 (248)
                      ...++.+||=+|+|. |..+..+++. +..+|+++|.+++-++.+++.    +.   ...+..+  + ++.+.+.+  ..
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~l----Ga---~~~i~~~--~-~~~~~v~~~t~g  237 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREV----GA---DAAVKSG--A-GAADAIRELTGG  237 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHT----TC---SEEEECS--T-THHHHHHHHHGG
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----CC---CEEEcCC--C-cHHHHHHHHhCC
Confidence            356899999999875 6666666654 456999999999988877653    21   1122221  1 22222211  12


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      ..+|+|+-...      .    ...++.+.+.|+++|.++..
T Consensus       238 ~g~d~v~d~~G------~----~~~~~~~~~~l~~~G~iv~~  269 (345)
T 3jv7_A          238 QGATAVFDFVG------A----QSTIDTAQQVVAVDGHISVV  269 (345)
T ss_dssp             GCEEEEEESSC------C----HHHHHHHHHHEEEEEEEEEC
T ss_pred             CCCeEEEECCC------C----HHHHHHHHHHHhcCCEEEEE
Confidence            37999975432      1    23566777899999999876

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=89.88  E-value=0.28  Score=41.32  Aligned_cols=95  Identities=15%  Similarity=0.089  Sum_probs=58.7

Q ss_pred             CCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc-cCCcee
Q 025775           31 PYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQAD  107 (248)
Q Consensus        31 ~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~fD  107 (248)
                      ++.+||-+|+|. |..+..++.. +..+|+++|.+++-++.+++. .       ...  .|..+.++.+.+.. ....+|
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a-------~~v--~~~~~~~~~~~~~~~~~~g~D  233 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-A-------DRL--VNPLEEDLLEVVRRVTGSGVE  233 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-C-------SEE--ECTTTSCHHHHHHHHHSSCEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-H-------Hhc--cCcCccCHHHHHHHhcCCCCC
Confidence            789999999864 5555566554 444899999998877665432 1       111  23333333322211 134699


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +|+.....          ...++...+.|+++|.++..
T Consensus       234 ~vid~~g~----------~~~~~~~~~~l~~~G~iv~~  261 (343)
T 2dq4_A          234 VLLEFSGN----------EAAIHQGLMALIPGGEARIL  261 (343)
T ss_dssp             EEEECSCC----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             EEEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence            99764421          13456677889999998865

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=89.84  E-value=1.1  Score=37.46  Aligned_cols=97  Identities=21%  Similarity=0.187  Sum_probs=59.5

Q ss_pred             cCCCCeEEEEcC--CCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc--cCC
Q 025775           29 SHPYVTVCDLYC--GAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (248)
Q Consensus        29 ~~~~~~VLDlGc--G~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~  104 (248)
                      +.++.+||-.|+  |.|..+..++.....+|+++|.+++.++.+++.    +    .. ...|..+.+..+.+.+  ...
T Consensus       143 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~----g----~~-~~~d~~~~~~~~~i~~~~~~~  213 (333)
T 1wly_A          143 VKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKL----G----CH-HTINYSTQDFAEVVREITGGK  213 (333)
T ss_dssp             CCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----T----CS-EEEETTTSCHHHHHHHHHTTC
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----C----CC-EEEECCCHHHHHHHHHHhCCC
Confidence            447899999995  345555555544334899999999888777542    1    11 1123333333222211  134


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      .+|+|+.....           ..++.+.+.|+++|.++..
T Consensus       214 ~~d~vi~~~g~-----------~~~~~~~~~l~~~G~iv~~  243 (333)
T 1wly_A          214 GVDVVYDSIGK-----------DTLQKSLDCLRPRGMCAAY  243 (333)
T ss_dssp             CEEEEEECSCT-----------TTHHHHHHTEEEEEEEEEC
T ss_pred             CCeEEEECCcH-----------HHHHHHHHhhccCCEEEEE
Confidence            69999765432           2356677899999998875

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=89.71  E-value=2.2  Score=31.01  Aligned_cols=104  Identities=7%  Similarity=-0.001  Sum_probs=58.8

Q ss_pred             CCeEEEEcCCC-CccHh-HHHHcCCCeEEEEeCCh-HHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           32 YVTVCDLYCGA-GVDVD-KWETALIANYIGIDVAT-SGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        32 ~~~VLDlGcG~-G~~~~-~l~~~~~~~v~giDis~-~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      ..+|+=+|+|. |..+. .+...+. .|+.+|.++ +..+....... .+    +.++.+|..+.......  .-...|+
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~~~-~~----~~~i~gd~~~~~~l~~a--~i~~ad~   74 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLG-DN----ADVIPGDSNDSSVLKKA--GIDRCRA   74 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHC-TT----CEEEESCTTSHHHHHHH--TTTTCSE
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEECCChHHHHHHHHhhc-CC----CeEEEcCCCCHHHHHHc--ChhhCCE
Confidence            45678788764 33222 2223344 899999974 44433332221 12    67889998765432211  2356888


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChh
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~  150 (248)
                      |++..      .+. .....+....+.+.|...++....+..
T Consensus        75 vi~~~------~~d-~~n~~~~~~a~~~~~~~~ii~~~~~~~  109 (153)
T 1id1_A           75 ILALS------DND-ADNAFVVLSAKDMSSDVKTVLAVSDSK  109 (153)
T ss_dssp             EEECS------SCH-HHHHHHHHHHHHHTSSSCEEEECSSGG
T ss_pred             EEEec------CCh-HHHHHHHHHHHHHCCCCEEEEEECCHH
Confidence            87643      222 344555566667778888777655543

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=89.47  E-value=6.8  Score=31.11  Aligned_cols=113  Identities=5%  Similarity=-0.053  Sum_probs=66.8

Q ss_pred             CCCeEEEEcCC--CC--c-cHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh----hcc
Q 025775           31 PYVTVCDLYCG--AG--V-DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQE  101 (248)
Q Consensus        31 ~~~~VLDlGcG--~G--~-~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~  101 (248)
                      .+.+||=.|++  .|  . .+..++..+. +|+.++.+....+.+.+.....+ ..++.++++|+.+..-...    +..
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~   83 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSVHELAGTLD-RNDSIILPCDVTNDAEIETCFASIKE   83 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHTSS-SCCCEEEECCCSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHHhcC-CCCceEEeCCCCCHHHHHHHHHHHHH
Confidence            46778888876  33  2 2234444565 89999988766665555444322 1248899999987542211    111


Q ss_pred             cCCceeEEEeccchhh--------hcCCHHHHH-----------HHHHHHhccccCCcEEEEE
Q 025775          102 KANQADLVCCFQHLQM--------CFETEERAR-----------RLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       102 ~~~~fD~V~~~~~l~~--------~~~~~~~~~-----------~~l~~~~~~LkpgG~~i~~  145 (248)
                      ..++.|+++...+...        .-.+.+...           .+++.+...|+++|.++..
T Consensus        84 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~i  146 (266)
T 3oig_A           84 QVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTL  146 (266)
T ss_dssp             HHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEE
T ss_pred             HhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEE
Confidence            2357898877654321        012333333           3556777788888888776

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=89.32  E-value=4.8  Score=32.37  Aligned_cols=112  Identities=13%  Similarity=-0.012  Sum_probs=66.0

Q ss_pred             CCCeEEEEcCCCCc---cHhHHHHcCCCeEEEEeCC------------hHHHHHHHHHHHhcCCCceEEEEEcCCCCCch
Q 025775           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVA------------TSGIGEARDTWENQRKNFIAEFFEADPCAENF   95 (248)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~l~~~~~~~v~giDis------------~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~   95 (248)
                      .+.+||=-|++.|-   .+..++..+. +|+.+|.+            ...++.+.......+  .++.++++|+.+..-
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~   85 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG--RKAYTAEVDVRDRAA   85 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT--SCEEEEECCTTCHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcccccccccccchhhhHHHHHHHHHHHhcC--CceEEEEccCCCHHH
Confidence            46778888876642   2233444465 89999987            666665555444332  358899999987432


Q ss_pred             hhh----hcccCCceeEEEeccchhhhc--CCHHHHH-----------HHHHHHhccccCCcEEEEE
Q 025775           96 ETQ----MQEKANQADLVCCFQHLQMCF--ETEERAR-----------RLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus        96 ~~~----~~~~~~~fD~V~~~~~l~~~~--~~~~~~~-----------~~l~~~~~~LkpgG~~i~~  145 (248)
                      ...    .....++.|+++...+.....  .+.+..+           .+++.+...|+.+|.++..
T Consensus        86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~i  152 (287)
T 3pxx_A           86 VSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITT  152 (287)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEE
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEe
Confidence            111    111235789988766542110  1223232           3456677778888888776

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=89.26  E-value=0.34  Score=41.08  Aligned_cols=96  Identities=16%  Similarity=0.114  Sum_probs=59.4

Q ss_pred             cCCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCC-chhhhhcccCCc
Q 025775           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE-NFETQMQEKANQ  105 (248)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~  105 (248)
                      +.++.+||-+|+|. |..+..++.. +. +|+++|.+++-++.+++.  +.     ...+.  ..+. ++...+   .+.
T Consensus       177 ~~~g~~VlV~GaG~vG~~~~qlak~~Ga-~Vi~~~~~~~~~~~~~~l--Ga-----~~v~~--~~~~~~~~~~~---~~~  243 (360)
T 1piw_A          177 CGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKM--GA-----DHYIA--TLEEGDWGEKY---FDT  243 (360)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHH--TC-----SEEEE--GGGTSCHHHHS---CSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHc--CC-----CEEEc--CcCchHHHHHh---hcC
Confidence            45899999999964 5555566554 55 799999999988887652  11     11222  1112 222222   257


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +|+|+.....-    .    ...++.+.+.|++||.++..
T Consensus       244 ~D~vid~~g~~----~----~~~~~~~~~~l~~~G~iv~~  275 (360)
T 1piw_A          244 FDLIVVCASSL----T----DIDFNIMPKAMKVGGRIVSI  275 (360)
T ss_dssp             EEEEEECCSCS----T----TCCTTTGGGGEEEEEEEEEC
T ss_pred             CCEEEECCCCC----c----HHHHHHHHHHhcCCCEEEEe
Confidence            99997654320    0    11245567899999998865

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=89.23  E-value=1.1  Score=37.82  Aligned_cols=97  Identities=11%  Similarity=0.009  Sum_probs=59.7

Q ss_pred             cCCCCeEEEEc-CC-CCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc-cCCc
Q 025775           29 SHPYVTVCDLY-CG-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ  105 (248)
Q Consensus        29 ~~~~~~VLDlG-cG-~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~  105 (248)
                      +.++.+||-.| +| -|..+..++.....+|+++|.+++.++.+++.-  .     ...+  |..+.++.+.+.. ....
T Consensus       165 ~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lG--a-----~~~~--~~~~~~~~~~~~~~~~~g  235 (353)
T 4dup_A          165 LTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLG--A-----KRGI--NYRSEDFAAVIKAETGQG  235 (353)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHT--C-----SEEE--ETTTSCHHHHHHHHHSSC
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcC--C-----CEEE--eCCchHHHHHHHHHhCCC
Confidence            34889999995 34 365555665553348999999999888776531  1     1122  2233333322211 1457


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +|+|+....-.           .+....+.|+++|.++..
T Consensus       236 ~Dvvid~~g~~-----------~~~~~~~~l~~~G~iv~~  264 (353)
T 4dup_A          236 VDIILDMIGAA-----------YFERNIASLAKDGCLSII  264 (353)
T ss_dssp             EEEEEESCCGG-----------GHHHHHHTEEEEEEEEEC
T ss_pred             ceEEEECCCHH-----------HHHHHHHHhccCCEEEEE
Confidence            99997654321           356677899999998875

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=89.08  E-value=2.3  Score=31.96  Aligned_cols=102  Identities=14%  Similarity=0.125  Sum_probs=59.2

Q ss_pred             CCeEEEEcCCC-CccHh-HHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           32 YVTVCDLYCGA-GVDVD-KWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        32 ~~~VLDlGcG~-G~~~~-~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      +.+|+=+|||. |..+. .+... +. .|+++|.+++.++.++.    .+    +..+.+|..+........ ....+|+
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~~~~~~~~~----~g----~~~~~gd~~~~~~l~~~~-~~~~ad~  108 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIREEAAQQHRS----EG----RNVISGDATDPDFWERIL-DTGHVKL  108 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCHHHHHHHHH----TT----CCEEECCTTCHHHHHTBC-SCCCCCE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCHHHHHHHHH----CC----CCEEEcCCCCHHHHHhcc-CCCCCCE
Confidence            56899999886 44333 33344 55 89999999987766542    22    456778876543211100 1346898


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChh
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~  150 (248)
                      |++..      .+.+....++ ...+.+.|++.++....+..
T Consensus       109 vi~~~------~~~~~~~~~~-~~~~~~~~~~~ii~~~~~~~  143 (183)
T 3c85_A          109 VLLAM------PHHQGNQTAL-EQLQRRNYKGQIAAIAEYPD  143 (183)
T ss_dssp             EEECC------SSHHHHHHHH-HHHHHTTCCSEEEEEESSHH
T ss_pred             EEEeC------CChHHHHHHH-HHHHHHCCCCEEEEEECCHH
Confidence            87633      2222233333 34556677888887765543

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=88.83  E-value=0.7  Score=38.46  Aligned_cols=96  Identities=14%  Similarity=0.131  Sum_probs=59.0

Q ss_pred             cCCCCeEEEEcC-C-CCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc--cC
Q 025775           29 SHPYVTVCDLYC-G-AGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KA  103 (248)
Q Consensus        29 ~~~~~~VLDlGc-G-~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~  103 (248)
                      +.++.+||-.|+ | .|..+..++.. +. +|+++|.+++.++.+++.  ...    . .  .|..+.+..+.+..  ..
T Consensus       138 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~--g~~----~-~--~~~~~~~~~~~~~~~~~~  207 (327)
T 1qor_A          138 IKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKA--GAW----Q-V--INYREEDLVERLKEITGG  207 (327)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHH--TCS----E-E--EETTTSCHHHHHHHHTTT
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHc--CCC----E-E--EECCCccHHHHHHHHhCC
Confidence            347899999994 2 35555555443 55 899999999888777652  111    1 1  23333333222211  12


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      ..+|+|+.... .          ..++.+.+.|+++|.++..
T Consensus       208 ~~~D~vi~~~g-~----------~~~~~~~~~l~~~G~iv~~  238 (327)
T 1qor_A          208 KKVRVVYDSVG-R----------DTWERSLDCLQRRGLMVSF  238 (327)
T ss_dssp             CCEEEEEECSC-G----------GGHHHHHHTEEEEEEEEEC
T ss_pred             CCceEEEECCc-h----------HHHHHHHHHhcCCCEEEEE
Confidence            46999977653 1          2356677899999998875

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=88.73  E-value=0.95  Score=38.35  Aligned_cols=97  Identities=12%  Similarity=0.000  Sum_probs=60.1

Q ss_pred             cCCCCeEEEEc-CC-CCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc-cCCc
Q 025775           29 SHPYVTVCDLY-CG-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ  105 (248)
Q Consensus        29 ~~~~~~VLDlG-cG-~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~  105 (248)
                      +.++.+||-.| +| .|..+..++.....+|+++|.+++.++.+++.    +.   ...+  |..+.++.+.+.. ....
T Consensus       161 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~----Ga---~~~~--~~~~~~~~~~~~~~~~~g  231 (362)
T 2c0c_A          161 LSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSL----GC---DRPI--NYKTEPVGTVLKQEYPEG  231 (362)
T ss_dssp             CCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TC---SEEE--ETTTSCHHHHHHHHCTTC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHc----CC---cEEE--ecCChhHHHHHHHhcCCC
Confidence            45889999999 34 46666666554333899999998888777642    21   1122  2222333222211 2346


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +|+|+.....           ..++.+.+.|+++|.++..
T Consensus       232 ~D~vid~~g~-----------~~~~~~~~~l~~~G~iv~~  260 (362)
T 2c0c_A          232 VDVVYESVGG-----------AMFDLAVDALATKGRLIVI  260 (362)
T ss_dssp             EEEEEECSCT-----------HHHHHHHHHEEEEEEEEEC
T ss_pred             CCEEEECCCH-----------HHHHHHHHHHhcCCEEEEE
Confidence            9999765421           2566777899999998875

>1ej6_A Lambda2; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB: 2cse_U

Probab=88.57  E-value=0.34  Score=46.65  Aligned_cols=104  Identities=15%  Similarity=0.135  Sum_probs=67.6

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      ...+.++||+|.|.-.=...+.. ....|+.+|+-|-+-       ....+.....|++.|-....+.     ...++|.
T Consensus       819 ~~~~~~~lDlGTGPE~RiLsLiP-~~~pvtm~D~RP~ae-------~~~~w~~~T~f~~~DyL~~~~~-----~~~~~D~  885 (1289)
T 1ej6_A          819 VYDGDVVLDLGTGPEAKILELIP-ATSPVTCVDIRPTAQ-------PSGCWNVRTTFLELDYLSDGWI-----TGVRGDI  885 (1289)
T ss_dssp             CCTTCCEEEESCCSSCGGGGTSC-TTSCEEEEESSCCCS-------CSTTBSSCEEEEESCTTSSSCG-----GGCCCSE
T ss_pred             ecccceEEEccCCCcceeeeecC-CCCceEEecccCchh-------hhccccccceeeEcccccccee-----ecCCCcE
Confidence            44678999999998642222222 223799999877431       1112233478999998776664     2457999


Q ss_pred             EEeccchhhhcCCHH-HHHHHHHHHhccccCCcE--EEEE
Q 025775          109 VCCFQHLQMCFETEE-RARRLLQNVSSLLKPGGY--FLGI  145 (248)
Q Consensus       109 V~~~~~l~~~~~~~~-~~~~~l~~~~~~LkpgG~--~i~~  145 (248)
                      |+|.+++...+-... .+.+.++++.+.+++.|.  +++.
T Consensus       886 vt~i~SLGAA~A~a~~tl~~~~~q~l~~~~~~~~~~l~lQ  925 (1289)
T 1ej6_A          886 VTCMLSLGAAAAGKSMTFDAAFQQLIKVLSKSTANVVLVQ  925 (1289)
T ss_dssp             EEECSCHHHHHHHHTCCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred             EEEEeechhhhhccCCcHHHHHHHHHHHHHhcCccEEEEE
Confidence            999998865432221 367788888888877663  5555

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=88.54  E-value=2.4  Score=35.36  Aligned_cols=98  Identities=10%  Similarity=0.047  Sum_probs=58.4

Q ss_pred             cCCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc--cCC
Q 025775           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (248)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~  104 (248)
                      ..++.+||=.|+|. |..+..++.. +...++++|.+++-++.+++.-.       ...+.  ..+.+..+....  ...
T Consensus       158 ~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa-------~~~i~--~~~~~~~~~~~~~~~~~  228 (346)
T 4a2c_A          158 GCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGA-------MQTFN--SSEMSAPQMQSVLRELR  228 (346)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC-------SEEEE--TTTSCHHHHHHHHGGGC
T ss_pred             cCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCC-------eEEEe--CCCCCHHHHHHhhcccC
Confidence            45899999999986 3334444443 56678999999998887765311       11222  222222211110  234


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      .+|+|+....          ....++...++|++||.+++.
T Consensus       229 g~d~v~d~~G----------~~~~~~~~~~~l~~~G~~v~~  259 (346)
T 4a2c_A          229 FNQLILETAG----------VPQTVELAVEIAGPHAQLALV  259 (346)
T ss_dssp             SSEEEEECSC----------SHHHHHHHHHHCCTTCEEEEC
T ss_pred             Cccccccccc----------ccchhhhhhheecCCeEEEEE
Confidence            5788765432          123456677889999998876

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=88.52  E-value=0.79  Score=38.51  Aligned_cols=96  Identities=16%  Similarity=0.096  Sum_probs=59.8

Q ss_pred             cCCCCeEEEEcC-C-CCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc--cCC
Q 025775           29 SHPYVTVCDLYC-G-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (248)
Q Consensus        29 ~~~~~~VLDlGc-G-~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~  104 (248)
                      +.++.+||=.|+ | -|..+..++.....+|++++.+++-++.+++.-  .     ...+..+   .++.+.+..  ...
T Consensus       157 ~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g--a-----~~v~~~~---~~~~~~v~~~~~~~  226 (342)
T 4eye_A          157 LRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVG--A-----DIVLPLE---EGWAKAVREATGGA  226 (342)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHT--C-----SEEEESS---TTHHHHHHHHTTTS
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcC--C-----cEEecCc---hhHHHHHHHHhCCC
Confidence            358899999997 3 366666665553349999999999888776531  1     1122222   223222211  123


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      .+|+|+.....           ..+..+.+.|+++|.++..
T Consensus       227 g~Dvvid~~g~-----------~~~~~~~~~l~~~G~iv~~  256 (342)
T 4eye_A          227 GVDMVVDPIGG-----------PAFDDAVRTLASEGRLLVV  256 (342)
T ss_dssp             CEEEEEESCC-------------CHHHHHHTEEEEEEEEEC
T ss_pred             CceEEEECCch-----------hHHHHHHHhhcCCCEEEEE
Confidence            69999764421           1356677899999999876

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=88.06  E-value=2.7  Score=34.08  Aligned_cols=83  Identities=10%  Similarity=-0.035  Sum_probs=52.2

Q ss_pred             CCCeEEEEcCCCCc---cHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCC-chh----hhhccc
Q 025775           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE-NFE----TQMQEK  102 (248)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~----~~~~~~  102 (248)
                      .+.+||=.|++.|-   .+..++..+. +|+.++.++..++.+.+.....+ ..++.++.+|+.+. .-.    ..+...
T Consensus        11 ~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~v~~~~~~~~~~   88 (311)
T 3o26_A           11 KRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRDVTKGHEAVEKLKNSN-HENVVFHQLDVTDPIATMSSLADFIKTH   88 (311)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTT-CCSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CCceEEEEccCCCcHHHHHHHHHHHHHh
Confidence            45678877766541   2233444465 89999999988877766655432 23588999999885 321    111112


Q ss_pred             CCceeEEEeccch
Q 025775          103 ANQADLVCCFQHL  115 (248)
Q Consensus       103 ~~~fD~V~~~~~l  115 (248)
                      .++.|+++...+.
T Consensus        89 ~g~iD~lv~nAg~  101 (311)
T 3o26_A           89 FGKLDILVNNAGV  101 (311)
T ss_dssp             HSSCCEEEECCCC
T ss_pred             CCCCCEEEECCcc
Confidence            3579999887654

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=87.84  E-value=0.78  Score=38.92  Aligned_cols=91  Identities=13%  Similarity=0.084  Sum_probs=56.1

Q ss_pred             CCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCCh---HHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           32 YVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVAT---SGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        32 ~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~---~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      +.+||-+|+|. |..+..++.. +. +|+++|.++   +-++.+++.    +    +..+  | .+ ++.+.+....+.+
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~~~----g----a~~v--~-~~-~~~~~~~~~~~~~  247 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTYGL-EVWMANRREPTEVEQTVIEET----K----TNYY--N-SS-NGYDKLKDSVGKF  247 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHHTC-EEEEEESSCCCHHHHHHHHHH----T----CEEE--E-CT-TCSHHHHHHHCCE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCccchHHHHHHHHh----C----Ccee--c-hH-HHHHHHHHhCCCC
Confidence            89999999853 4444444443 55 999999998   766666532    2    2222  3 22 2222221112579


Q ss_pred             eEEEeccchhhhcCCHHHHHHHH-HHHhccccCCcEEEEE
Q 025775          107 DLVCCFQHLQMCFETEERARRLL-QNVSSLLKPGGYFLGI  145 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l-~~~~~~LkpgG~~i~~  145 (248)
                      |+|+......          ..+ +.+.+.|+++|.++..
T Consensus       248 d~vid~~g~~----------~~~~~~~~~~l~~~G~iv~~  277 (366)
T 2cdc_A          248 DVIIDATGAD----------VNILGNVIPLLGRNGVLGLF  277 (366)
T ss_dssp             EEEEECCCCC----------THHHHHHGGGEEEEEEEEEC
T ss_pred             CEEEECCCCh----------HHHHHHHHHHHhcCCEEEEE
Confidence            9997654321          134 7778899999998876

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=87.71  E-value=0.37  Score=39.86  Aligned_cols=62  Identities=19%  Similarity=0.199  Sum_probs=39.5

Q ss_pred             EEEEEcCCCCCchhhhhcccCCceeEEEeccchhhhc--C--------------CHHHHHHHHHHHhccccCCcEEEEEe
Q 025775           83 AEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCF--E--------------TEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus        83 ~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~--~--------------~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      ..++++|+.+  ....+  ++++||+|++.--....-  .              ....+..++.++.++|+|||.+++.+
T Consensus        22 ~~i~~gD~~~--~l~~l--~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~   97 (297)
T 2zig_A           22 HRLHVGDARE--VLASF--PEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVV   97 (297)
T ss_dssp             EEEEESCHHH--HHTTS--CTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CEEEECcHHH--HHhhC--CCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            6789999744  11111  357899998853221000  0              01224567889999999999999886


Q ss_pred             cC
Q 025775          147 PD  148 (248)
Q Consensus       147 ~~  148 (248)
                      .+
T Consensus        98 ~d   99 (297)
T 2zig_A           98 GD   99 (297)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=87.68  E-value=0.69  Score=41.11  Aligned_cols=58  Identities=12%  Similarity=0.072  Sum_probs=43.1

Q ss_pred             CCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC
Q 025775           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA   92 (248)
Q Consensus        32 ~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~   92 (248)
                      ..+++||-||.|+....+...+...+.++|+++.+++.-+..+....   ....++.|+.+
T Consensus        88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~~p---~~~~~~~DI~~  145 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCDP---ATHHFNEDIRD  145 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCCCT---TTCEEESCTHH
T ss_pred             cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcccCC---Ccceeccchhh
Confidence            35899999999999999988887678999999988776555442111   13466788754

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=87.36  E-value=0.83  Score=37.78  Aligned_cols=87  Identities=11%  Similarity=-0.044  Sum_probs=55.8

Q ss_pred             cCCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      +.++.+||=+|+|. |..+..+++. +. +|+++| +++-++.+++.    +    +..+.-|      .+.+   ...+
T Consensus       140 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~l----G----a~~v~~d------~~~v---~~g~  200 (315)
T 3goh_A          140 LTKQREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAKR----G----VRHLYRE------PSQV---TQKY  200 (315)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHHH----T----EEEEESS------GGGC---CSCE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHHc----C----CCEEEcC------HHHh---CCCc
Confidence            34899999999964 6666666655 55 999999 98888877653    2    2222222      1111   5679


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      |+|+-...-           ..+....++|+++|.++..
T Consensus       201 Dvv~d~~g~-----------~~~~~~~~~l~~~G~~v~~  228 (315)
T 3goh_A          201 FAIFDAVNS-----------QNAAALVPSLKANGHIICI  228 (315)
T ss_dssp             EEEECC------------------TTGGGEEEEEEEEEE
T ss_pred             cEEEECCCc-----------hhHHHHHHHhcCCCEEEEE
Confidence            999653311           1125567899999999876

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=87.17  E-value=8.7  Score=31.15  Aligned_cols=112  Identities=13%  Similarity=0.064  Sum_probs=64.6

Q ss_pred             CCCeEEEEcCCCCc---cHhHHHHcCCCeEEEEeCChHH-HHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhccc
Q 025775           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSG-IGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEK  102 (248)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~l~~~~~~~v~giDis~~~-l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~  102 (248)
                      .+.+||=.|++.|-   .+..++..+. +|+.+|.+... .+...+.....+  .++.++++|+.+..-..    ...+.
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  122 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEEGDANETKQYVEKEG--VKCVLLPGDLSDEQHCKDIVQETVRQ  122 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTT--CCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            45788888876542   2233444465 89999988763 333333333322  35889999998743211    11112


Q ss_pred             CCceeEEEeccchhhh---c--CCHHHHH-----------HHHHHHhccccCCcEEEEE
Q 025775          103 ANQADLVCCFQHLQMC---F--ETEERAR-----------RLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       103 ~~~fD~V~~~~~l~~~---~--~~~~~~~-----------~~l~~~~~~LkpgG~~i~~  145 (248)
                      .++.|+++...+....   +  .+.++.+           .+++.+...|+++|.++..
T Consensus       123 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~i  181 (291)
T 3ijr_A          123 LGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINT  181 (291)
T ss_dssp             HSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEE
Confidence            3578998876543211   0  1333333           3556777788888988776

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=87.15  E-value=7.9  Score=31.95  Aligned_cols=84  Identities=13%  Similarity=0.013  Sum_probs=53.9

Q ss_pred             CCCeEEEEcCCCCc---cHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhcccC
Q 025775           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKA  103 (248)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~~  103 (248)
                      .+.+||=.|++.|-   .+..++..+. +|++++.++..++.+.+.+...+...++.++++|+.+..-..    ......
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   85 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQGC-KVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARF   85 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhC
Confidence            35678888876552   2233344466 899999999988877766654332235889999998743211    111224


Q ss_pred             CceeEEEeccch
Q 025775          104 NQADLVCCFQHL  115 (248)
Q Consensus       104 ~~fD~V~~~~~l  115 (248)
                      +..|+++...+.
T Consensus        86 g~id~lv~nAg~   97 (319)
T 3ioy_A           86 GPVSILCNNAGV   97 (319)
T ss_dssp             CCEEEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            678999887653

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=87.08  E-value=0.47  Score=39.10  Aligned_cols=92  Identities=15%  Similarity=0.065  Sum_probs=58.1

Q ss_pred             cCCCCeEEEEcC-C-CCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC-CchhhhhcccCCc
Q 025775           29 SHPYVTVCDLYC-G-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-ENFETQMQEKANQ  105 (248)
Q Consensus        29 ~~~~~~VLDlGc-G-~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~  105 (248)
                      +.++.+||-+|+ | .|..+..++.....+|+++|.+++.++.+++.    +.   ...+  |..+ .++.+.+    ..
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----ga---~~~~--~~~~~~~~~~~~----~~  189 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLAL----GA---EEAA--TYAEVPERAKAW----GG  189 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHT----TC---SEEE--EGGGHHHHHHHT----TS
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhc----CC---CEEE--ECCcchhHHHHh----cC
Confidence            678999999998 3 36656566554334999999999888777542    21   1111  2211 1222111    57


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +|+|+. ...           ..++...+.|+++|.++..
T Consensus       190 ~d~vid-~g~-----------~~~~~~~~~l~~~G~~v~~  217 (302)
T 1iz0_A          190 LDLVLE-VRG-----------KEVEESLGLLAHGGRLVYI  217 (302)
T ss_dssp             EEEEEE-CSC-----------TTHHHHHTTEEEEEEEEEC
T ss_pred             ceEEEE-CCH-----------HHHHHHHHhhccCCEEEEE
Confidence            999987 421           1356778899999998765

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=86.84  E-value=1.3  Score=37.39  Aligned_cols=98  Identities=10%  Similarity=-0.063  Sum_probs=59.9

Q ss_pred             cCCC--CeEEEEcCC--CCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc-c
Q 025775           29 SHPY--VTVCDLYCG--AGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-K  102 (248)
Q Consensus        29 ~~~~--~~VLDlGcG--~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~  102 (248)
                      +.++  .+||-.|++  -|..+..++.. +.++|+++|.+++.++.+++.+   +    .. ...|..+.++...+.. .
T Consensus       156 ~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~---g----~~-~~~d~~~~~~~~~~~~~~  227 (357)
T 2zb4_A          156 ITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSEL---G----FD-AAINYKKDNVAEQLRESC  227 (357)
T ss_dssp             CCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTS---C----CS-EEEETTTSCHHHHHHHHC
T ss_pred             CCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHc---C----Cc-eEEecCchHHHHHHHHhc
Confidence            4578  999999983  35555555544 4448999999988777665422   2    11 1223333333322221 1


Q ss_pred             CCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       103 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      .+.+|+|+....-           ..++.+.++|+++|.++..
T Consensus       228 ~~~~d~vi~~~G~-----------~~~~~~~~~l~~~G~iv~~  259 (357)
T 2zb4_A          228 PAGVDVYFDNVGG-----------NISDTVISQMNENSHIILC  259 (357)
T ss_dssp             TTCEEEEEESCCH-----------HHHHHHHHTEEEEEEEEEC
T ss_pred             CCCCCEEEECCCH-----------HHHHHHHHHhccCcEEEEE
Confidence            2369998765431           3567778899999998865

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=86.75  E-value=2.4  Score=35.35  Aligned_cols=98  Identities=12%  Similarity=0.080  Sum_probs=57.3

Q ss_pred             cCCCCeEEEEcCCCCc-cHhHHHH-cCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc--cCC
Q 025775           29 SHPYVTVCDLYCGAGV-DVDKWET-ALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~-~~~~l~~-~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~  104 (248)
                      ..++.+||=+|+|.++ .+..++. ....+|+++|.+++-++.+++.-..       ..+  |..+.+..+.+.+  ...
T Consensus       161 ~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~-------~~i--~~~~~~~~~~v~~~t~g~  231 (348)
T 4eez_A          161 VKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGAD-------VTI--NSGDVNPVDEIKKITGGL  231 (348)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCS-------EEE--EC-CCCHHHHHHHHTTSS
T ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCe-------EEE--eCCCCCHHHHhhhhcCCC
Confidence            5689999999998743 3333333 3556999999999877766543211       112  2222333322221  123


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      .+|.++...      ..    ...+....+.|+++|.++..
T Consensus       232 g~d~~~~~~------~~----~~~~~~~~~~l~~~G~~v~~  262 (348)
T 4eez_A          232 GVQSAIVCA------VA----RIAFEQAVASLKPMGKMVAV  262 (348)
T ss_dssp             CEEEEEECC------SC----HHHHHHHHHTEEEEEEEEEC
T ss_pred             CceEEEEec------cC----cchhheeheeecCCceEEEE
Confidence            466664322      11    23466677899999998876

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=86.53  E-value=12  Score=30.42  Aligned_cols=111  Identities=10%  Similarity=-0.091  Sum_probs=65.1

Q ss_pred             CCCeEEEEcCCCC-----ccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhcc
Q 025775           31 PYVTVCDLYCGAG-----VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQE  101 (248)
Q Consensus        31 ~~~~VLDlGcG~G-----~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~  101 (248)
                      .+.+||=.|.+.|     ..+..++..+. +|+.++.++...+.+.+.....+   ++.++++|+.+..-..    ....
T Consensus        30 ~gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~  105 (293)
T 3grk_A           30 QGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKKRVEPLAEELG---AFVAGHCDVADAASIDAVFETLEK  105 (293)
T ss_dssp             TTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHHHHHHHHHHHT---CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC---CceEEECCCCCHHHHHHHHHHHHH
Confidence            4678888887633     12344445565 89999998765554444333322   3788999998743211    1112


Q ss_pred             cCCceeEEEeccchhh--------hcCCHHHHH-----------HHHHHHhccccCCcEEEEE
Q 025775          102 KANQADLVCCFQHLQM--------CFETEERAR-----------RLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       102 ~~~~fD~V~~~~~l~~--------~~~~~~~~~-----------~~l~~~~~~LkpgG~~i~~  145 (248)
                      ..++.|+++...+...        .-.+.++..           .+++.+...|+++|.++..
T Consensus       106 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~i  168 (293)
T 3grk_A          106 KWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTL  168 (293)
T ss_dssp             HTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             hcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEE
Confidence            2367999887665421        011233332           3455666777778888776

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=86.40  E-value=4.3  Score=28.45  Aligned_cols=99  Identities=10%  Similarity=0.003  Sum_probs=52.9

Q ss_pred             CCeEEEEcCCC-CccHh-HHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           32 YVTVCDLYCGA-GVDVD-KWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        32 ~~~VLDlGcG~-G~~~~-~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      +.+|+=+|+|. |..+. .+...+. +++.+|.+++.++......   +    +.++.+|..+......  .....+|+|
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~~---~----~~~~~~d~~~~~~l~~--~~~~~~d~v   73 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEI---D----ALVINGDCTKIKTLED--AGIEDADMY   73 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC---S----SEEEESCTTSHHHHHH--TTTTTCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHhc---C----cEEEEcCCCCHHHHHH--cCcccCCEE
Confidence            46788888875 33222 2333354 8999999988766544321   2    4567777754322111  113468988


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      +....      .. .....+..+.+.+.++ .++....+
T Consensus        74 i~~~~------~~-~~~~~~~~~~~~~~~~-~ii~~~~~  104 (140)
T 1lss_A           74 IAVTG------KE-EVNLMSSLLAKSYGIN-KTIARISE  104 (140)
T ss_dssp             EECCS------CH-HHHHHHHHHHHHTTCC-CEEEECSS
T ss_pred             EEeeC------Cc-hHHHHHHHHHHHcCCC-EEEEEecC
Confidence            76431      22 2233444455557775 45444433

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=86.21  E-value=2.3  Score=36.10  Aligned_cols=98  Identities=12%  Similarity=-0.011  Sum_probs=57.6

Q ss_pred             cCCCCeEEEEc-CCC-CccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           29 SHPYVTVCDLY-CGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        29 ~~~~~~VLDlG-cG~-G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      ..++.+||=.| +|. |..+..++.....+|++++ +++-++.+++.    +.   ...+  |..+.++.+.+.. ...+
T Consensus       181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~~~l----Ga---~~v~--~~~~~~~~~~~~~-~~g~  249 (375)
T 2vn8_A          181 NCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELVRKL----GA---DDVI--DYKSGSVEEQLKS-LKPF  249 (375)
T ss_dssp             TCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHT----TC---SEEE--ETTSSCHHHHHHT-SCCB
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHHHHc----CC---CEEE--ECCchHHHHHHhh-cCCC
Confidence            45789999999 453 6666666555334899998 77666665432    21   1122  2223333332322 2469


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      |+|+....-.         ...+....+.|++||.++...
T Consensus       250 D~vid~~g~~---------~~~~~~~~~~l~~~G~iv~~g  280 (375)
T 2vn8_A          250 DFILDNVGGS---------TETWAPDFLKKWSGATYVTLV  280 (375)
T ss_dssp             SEEEESSCTT---------HHHHGGGGBCSSSCCEEEESC
T ss_pred             CEEEECCCCh---------hhhhHHHHHhhcCCcEEEEeC
Confidence            9987644211         123566778999999988763

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=85.78  E-value=2.8  Score=32.51  Aligned_cols=99  Identities=8%  Similarity=0.021  Sum_probs=57.2

Q ss_pred             eEEEEcCCC-CccHh-HHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEe
Q 025775           34 TVCDLYCGA-GVDVD-KWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (248)
Q Consensus        34 ~VLDlGcG~-G~~~~-~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~  111 (248)
                      +|+=+|+|. |..+. .+...+. .|+.+|.+++.++.....   .+    ..++.+|..+.......  .-...|+|++
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~l~~~---~~----~~~i~gd~~~~~~l~~a--~i~~ad~vi~   71 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKY-GVVIINKDRELCEEFAKK---LK----ATIIHGDGSHKEILRDA--EVSKNDVVVI   71 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHH---SS----SEEEESCTTSHHHHHHH--TCCTTCEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHH---cC----CeEEEcCCCCHHHHHhc--CcccCCEEEE
Confidence            466677654 32222 2233344 899999999887654432   12    56889998775432221  2356888876


Q ss_pred             ccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       112 ~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      ..      .+. .....+..+.+.+.|...++....+.
T Consensus        72 ~~------~~d-~~n~~~~~~a~~~~~~~~iia~~~~~  102 (218)
T 3l4b_C           72 LT------PRD-EVNLFIAQLVMKDFGVKRVVSLVNDP  102 (218)
T ss_dssp             CC------SCH-HHHHHHHHHHHHTSCCCEEEECCCSG
T ss_pred             ec------CCc-HHHHHHHHHHHHHcCCCeEEEEEeCc
Confidence            43      222 24445555556666777776654433

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=85.75  E-value=6  Score=32.17  Aligned_cols=109  Identities=13%  Similarity=-0.002  Sum_probs=68.4

Q ss_pred             CCCeEEEEcCCCCc---cHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhcccC
Q 025775           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKA  103 (248)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~~  103 (248)
                      ++..+|=-|.+.|-   .+..++..+. +|+.+|.+++.++.+.+.+..     ++..+++|+.+..-.+    ...+.-
T Consensus        28 ~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~~g~-----~~~~~~~Dv~~~~~v~~~~~~~~~~~  101 (273)
T 4fgs_A           28 NAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEIGG-----GAVGIQADSANLAELDRLYEKVKAEA  101 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCT-----TCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCC-----CeEEEEecCCCHHHHHHHHHHHHHHc
Confidence            57788888877762   2234444566 899999999988877655422     3678899998754221    112234


Q ss_pred             CceeEEEeccchhhh--c--CCHHHHH-----------HHHHHHhccccCCcEEEEE
Q 025775          104 NQADLVCCFQHLQMC--F--ETEERAR-----------RLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       104 ~~fD~V~~~~~l~~~--~--~~~~~~~-----------~~l~~~~~~LkpgG~~i~~  145 (248)
                      ++.|+++.+......  +  .+.++.+           .+.+.+...|+.+|.++..
T Consensus       102 G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IIni  158 (273)
T 4fgs_A          102 GRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLT  158 (273)
T ss_dssp             SCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEE
T ss_pred             CCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEE
Confidence            689998876543211  0  1233333           3456777888888887766

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=85.70  E-value=2  Score=31.42  Aligned_cols=103  Identities=10%  Similarity=0.074  Sum_probs=56.6

Q ss_pred             CCCeEEEEcCCC-CccHhHHH-HcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           31 PYVTVCDLYCGA-GVDVDKWE-TALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        31 ~~~~VLDlGcG~-G~~~~~l~-~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      ++.+|+=+|||. |..+...+ ..+. +|+++|.+++.++.++.   ..+    ...+.+|..+.......  ....+|+
T Consensus        18 ~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~~~~~~---~~g----~~~~~~d~~~~~~l~~~--~~~~ad~   87 (155)
T 2g1u_A           18 KSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAFHRLNS---EFS----GFTVVGDAAEFETLKEC--GMEKADM   87 (155)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGGGGSCT---TCC----SEEEESCTTSHHHHHTT--TGGGCSE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHh---cCC----CcEEEecCCCHHHHHHc--CcccCCE
Confidence            578999999876 44333333 3354 89999999876543321   112    44566776542221100  1246898


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChh
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~  150 (248)
                      |+...      .+.. ....+..+.+.+.+...++....+..
T Consensus        88 Vi~~~------~~~~-~~~~~~~~~~~~~~~~~iv~~~~~~~  122 (155)
T 2g1u_A           88 VFAFT------NDDS-TNFFISMNARYMFNVENVIARVYDPE  122 (155)
T ss_dssp             EEECS------SCHH-HHHHHHHHHHHTSCCSEEEEECSSGG
T ss_pred             EEEEe------CCcH-HHHHHHHHHHHHCCCCeEEEEECCHH
Confidence            87643      2222 33344445555566667776655443

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=85.62  E-value=1.5  Score=37.67  Aligned_cols=59  Identities=5%  Similarity=-0.050  Sum_probs=38.4

Q ss_pred             hHHHHHHHHHhcCCCCeEEEEcCCCCccHhHHHHc--------CCCeEEEEeCChHHHHHHHHHHHh
Q 025775           18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA--------LIANYIGIDVATSGIGEARDTWEN   76 (248)
Q Consensus        18 ~~~~~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~--------~~~~v~giDis~~~l~~a~~~~~~   76 (248)
                      .|+...+...-.+....|+|+|.|+|.++..++..        ...+|..+|+|+...+.-++++..
T Consensus        67 ~~~~~~w~~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~  133 (387)
T 1zkd_A           67 LWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG  133 (387)
T ss_dssp             HHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcC
Confidence            44433332222344567999999999987666432        123899999999888765555543

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=85.36  E-value=13  Score=30.10  Aligned_cols=111  Identities=8%  Similarity=-0.090  Sum_probs=65.4

Q ss_pred             CCCeEEEEcCCC--C--c-cHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh----hcc
Q 025775           31 PYVTVCDLYCGA--G--V-DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQE  101 (248)
Q Consensus        31 ~~~~VLDlGcG~--G--~-~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~  101 (248)
                      .+.+||=.|++.  |  . .+..++..+. +|+.+|.++...+.+.+.....+   .+.++++|+.+..-...    ..+
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~  104 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGA-EVALTYLSETFKKRVDPLAESLG---VKLTVPCDVSDAESVDNMFKVLAE  104 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHHT---CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcC---CeEEEEcCCCCHHHHHHHHHHHHH
Confidence            357788888753  3  1 2334444565 89999999876655554443333   26789999987432111    111


Q ss_pred             cCCceeEEEeccchhhh--------cCCHHHHH-----------HHHHHHhccccCCcEEEEE
Q 025775          102 KANQADLVCCFQHLQMC--------FETEERAR-----------RLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       102 ~~~~fD~V~~~~~l~~~--------~~~~~~~~-----------~~l~~~~~~LkpgG~~i~~  145 (248)
                      .-++.|+++...+....        -.+.++..           .+++.+...|+.+|.++..
T Consensus       105 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~i  167 (296)
T 3k31_A          105 EWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTL  167 (296)
T ss_dssp             HHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEE
T ss_pred             HcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEE
Confidence            23578998887654210        12233332           3455677777788888776

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=85.35  E-value=2.6  Score=39.03  Aligned_cols=123  Identities=13%  Similarity=0.199  Sum_probs=68.2

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc-----------CC--CeEEEEeC---ChHHHHHHHHHHH-----------hc-----C
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA-----------LI--ANYIGIDV---ATSGIGEARDTWE-----------NQ-----R   78 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~-----------~~--~~v~giDi---s~~~l~~a~~~~~-----------~~-----~   78 (248)
                      +..+|+|+|.|+|.........           ..  -+++.++.   +.+.+..|-+.+.           .-     +
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  137 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG  137 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence            4569999999999876544221           11  26899998   4444443322111           00     0


Q ss_pred             --------CCceEEEEEcCCCCCchhhhhcc-cCCceeEEEecc-chhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775           79 --------KNFIAEFFEADPCAENFETQMQE-KANQADLVCCFQ-HLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus        79 --------~~~~~~~~~~d~~~~~~~~~~~~-~~~~fD~V~~~~-~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                              ....++++.+|+.+.  .+.+.. ....+|.++.-. +...  .+.-....++..+.++++|||.+. +...
T Consensus       138 ~~r~~~~~~~~~l~l~~gd~~~~--l~~~~~~~~~~~da~flD~f~p~~--np~~w~~~~~~~l~~~~~~g~~~~-t~~~  212 (689)
T 3pvc_A          138 CHRILLADGAITLDLWFGDVNTL--LPTLDDSLNNQVDAWFLDGFAPAK--NPDMWNEQLFNAMARMTRPGGTFS-TFTA  212 (689)
T ss_dssp             EEEEEETTTTEEEEEEESCHHHH--GGGCCGGGTTCEEEEEECSSCC----CCTTCSHHHHHHHHHHEEEEEEEE-ESCC
T ss_pred             ceEEEecCCcEEEEEEccCHHHH--HhhcccccCCceeEEEECCCCCCC--ChhhhhHHHHHHHHHHhCCCCEEE-eccC
Confidence                    012456677776331  111110 146899997743 2111  111123678899999999999865 4445


Q ss_pred             hhHHHHHHHH
Q 025775          149 SSTIWAKYQK  158 (248)
Q Consensus       149 ~~~~~~~~~~  158 (248)
                      ...+.+.+.+
T Consensus       213 ~~~vr~~l~~  222 (689)
T 3pvc_A          213 AGFVRRGLQQ  222 (689)
T ss_dssp             CHHHHHHHHH
T ss_pred             cHHHHHHHHh
Confidence            5566666654

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=85.19  E-value=6.5  Score=31.60  Aligned_cols=82  Identities=11%  Similarity=0.070  Sum_probs=55.4

Q ss_pred             CCCeEEEEcCCCCc---cHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh----hcccC
Q 025775           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQEKA  103 (248)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~~  103 (248)
                      ++..+|==|.+.|-   .+..++..+. +|+.+|.+++.++.+.+.....+  .++.++++|+.+..-.+.    ..+.-
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~~   82 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRLNQIVQELRGMG--KEVLGVKADVSKKKDVEEFVRRTFETY   82 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            46777877877652   2234444565 89999999999988877776543  358899999987542211    11234


Q ss_pred             CceeEEEeccch
Q 025775          104 NQADLVCCFQHL  115 (248)
Q Consensus       104 ~~fD~V~~~~~l  115 (248)
                      ++.|+++.+..+
T Consensus        83 G~iDiLVNNAGi   94 (254)
T 4fn4_A           83 SRIDVLCNNAGI   94 (254)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            689998887653

>3iyl_W VP1; non-enveloped virus, membrane penetration protein, autocleav myristol group, icosahedral virus; HET: MYR; 3.30A {Grass carp reovirus} PDB: 3k1q_A

Probab=85.17  E-value=0.45  Score=46.11  Aligned_cols=114  Identities=9%  Similarity=-0.016  Sum_probs=71.1

Q ss_pred             HhHHHHHHHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCce-EEEEEcCCCCCch
Q 025775           17 YEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFI-AEFFEADPCAENF   95 (248)
Q Consensus        17 ~~~~~~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~-~~~~~~d~~~~~~   95 (248)
                      .|++...++..+  .+..+||+|.|.-.=...+.. +...|+.+|+-|-+--       ...+... ..|++.|-....+
T Consensus       815 Yn~~~~s~~~~~--~~~~~lDLGTGPEcRiLsliP-~~~pvtmvD~RP~ae~-------~~~w~~~~T~yi~~DYl~~~~  884 (1299)
T 3iyl_W          815 YNSFISEQTRNP--NLAHLLDLGTGPECRILSLIP-PTLQVTMSDSRPCAEL-------MASFDPALTAYVQGDYSTAAF  884 (1299)
T ss_dssp             TTTHHHHHHTCG--GGCSEEEETCCSSCSGGGSSC-TTSCEEEEESSCCSSC-------GGGBCTTTEEEEESCSSSGGG
T ss_pred             hhheehhcccCC--CCCEEEEcCCCccceeeecCC-CCCceEEEecCCcccc-------ccccccccceeEEecccccee
Confidence            465544433322  247899999998532222222 2237999998775321       1222334 6899999887666


Q ss_pred             hhhhcccCCceeEEEeccchhhhcC-CHHHHHHHHHHHhccccCCcE--EEEE
Q 025775           96 ETQMQEKANQADLVCCFQHLQMCFE-TEERARRLLQNVSSLLKPGGY--FLGI  145 (248)
Q Consensus        96 ~~~~~~~~~~fD~V~~~~~l~~~~~-~~~~~~~~l~~~~~~LkpgG~--~i~~  145 (248)
                      .     ...++|+++|.+++...+- ..-.+.+.++++.+.+++.|.  +++.
T Consensus       885 ~-----~~~~~d~vtailSLGAA~a~a~~tl~~~l~~~l~~~~~~~v~~l~lQ  932 (1299)
T 3iyl_W          885 W-----NGIRCDSATAIFTIGAAAAAAGTDLIAFVQQLIPRIVAAGGTRMWLQ  932 (1299)
T ss_dssp             G-----SSCCCSEEEETTTHHHHHHHTTCCHHHHHHHHHHHHHHTTCSEEEEC
T ss_pred             E-----ecCCCCEEEEeeechhhhhhCCCcHHHHHHHHHHHHHhcCceEEEEE
Confidence            4     3568999999998764322 122467888888888887774  4444

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=84.69  E-value=2.2  Score=37.56  Aligned_cols=101  Identities=11%  Similarity=0.082  Sum_probs=59.4

Q ss_pred             CCeEEEEcCCC-CccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           32 YVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        32 ~~~VLDlGcG~-G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      .++|+=+|||. |..+...+......|+.+|.+++.++.+..++.       +..+++|.++.......  .-...|+++
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~-------~~~i~Gd~~~~~~L~~A--gi~~ad~~i   73 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYD-------LRVVNGHASHPDVLHEA--GAQDADMLV   73 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSS-------CEEEESCTTCHHHHHHH--TTTTCSEEE
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcC-------cEEEEEcCCCHHHHHhc--CCCcCCEEE
Confidence            46788888885 544433333322389999999999887765532       66899999886653322  345789886


Q ss_pred             eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      +.-      . .+...-+...+.+.+.+.-..+...-+
T Consensus        74 a~t------~-~De~Nl~~~~~Ak~~~~~~~~iar~~~  104 (461)
T 4g65_A           74 AVT------N-TDETNMAACQVAFTLFNTPNRIARIRS  104 (461)
T ss_dssp             ECC------S-CHHHHHHHHHHHHHHHCCSSEEEECCC
T ss_pred             EEc------C-ChHHHHHHHHHHHHhcCCccceeEecc
Confidence            532      1 222333344444444444444444333

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=84.22  E-value=4.1  Score=32.62  Aligned_cols=84  Identities=15%  Similarity=-0.018  Sum_probs=52.7

Q ss_pred             CCCeEEEEcCCCCc---cHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      .+.++|=-|++.|-   .+..++..+. +|+.+|.++..++...+..........+.++.+|+.+..-...+.+.-++.|
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id   87 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSLVAEGA-NVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKVD   87 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCCS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCCC
Confidence            45677877765541   2233444465 8999999998887766655543323457889999977543222222346789


Q ss_pred             EEEeccch
Q 025775          108 LVCCFQHL  115 (248)
Q Consensus       108 ~V~~~~~l  115 (248)
                      +++...+.
T Consensus        88 ~lv~nAg~   95 (267)
T 3t4x_A           88 ILINNLGI   95 (267)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            98876543

>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus}

Probab=84.20  E-value=0.54  Score=38.60  Aligned_cols=47  Identities=15%  Similarity=0.153  Sum_probs=33.8

Q ss_pred             CCceeEEEeccch-----hhh--cCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          103 ANQADLVCCFQHL-----QMC--FETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       103 ~~~fD~V~~~~~l-----~~~--~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      .+++|+|++.++.     ||.  .++...+..++.-...+|+|||.|++-....
T Consensus       204 ~~k~DvV~SDMApn~sGh~yqQC~DHarii~Lal~fA~~vLkPGGtfV~Kvygg  257 (320)
T 2hwk_A          204 VPKYDIIFVNVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGY  257 (320)
T ss_dssp             SCCEEEEEEECCCCCCSCHHHHHHHHHHHHHHTHHHHGGGEEEEEEEEEEECCC
T ss_pred             cCcCCEEEEcCCCCCCCccccccchHHHHHHHHHHHHHHhcCCCceEEEEEecC
Confidence            3679999997644     322  3333445567888899999999999986554

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=83.87  E-value=15  Score=29.44  Aligned_cols=112  Identities=14%  Similarity=-0.029  Sum_probs=64.1

Q ss_pred             CCCeEEEEcCCCCc---cHhHHHHcCCCeEEEEeCCh-HHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh----hccc
Q 025775           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVAT-SGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQEK  102 (248)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~l~~~~~~~v~giDis~-~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~  102 (248)
                      .+.++|=.|++.|-   .+..++..+. +|+.+|.+. ..++...+.....+  .++.++++|+.+..-...    ..+.
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  106 (271)
T 3v2g_A           30 AGKTAFVTGGSRGIGAAIAKRLALEGA-AVALTYVNAAERAQAVVSEIEQAG--GRAVAIRADNRDAEAIEQAIRETVEA  106 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            57788988877652   2234444565 788886654 44554444443322  348889999987432111    1112


Q ss_pred             CCceeEEEeccchhhh----cCCHHHHH-----------HHHHHHhccccCCcEEEEE
Q 025775          103 ANQADLVCCFQHLQMC----FETEERAR-----------RLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       103 ~~~fD~V~~~~~l~~~----~~~~~~~~-----------~~l~~~~~~LkpgG~~i~~  145 (248)
                      .++.|+++...+....    -.+.++.+           .+++.+...|+++|.++..
T Consensus       107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~i  164 (271)
T 3v2g_A          107 LGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITI  164 (271)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEE
Confidence            3578998876543211    01233332           3456667777888887766

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=83.79  E-value=2.1  Score=35.83  Aligned_cols=94  Identities=20%  Similarity=0.032  Sum_probs=57.7

Q ss_pred             cCCCCeEEEEcC-C-CCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc--cCC
Q 025775           29 SHPYVTVCDLYC-G-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (248)
Q Consensus        29 ~~~~~~VLDlGc-G-~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~  104 (248)
                      +.++.+||=+|+ | .|..+..++.....+|+++ .+++-++.+++.    +    +..+.   ...++...+..  ...
T Consensus       148 ~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~l----G----a~~i~---~~~~~~~~~~~~~~~~  215 (343)
T 3gaz_A          148 VQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDL----G----ATPID---ASREPEDYAAEHTAGQ  215 (343)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHH----T----SEEEE---TTSCHHHHHHHHHTTS
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHc----C----CCEec---cCCCHHHHHHHHhcCC
Confidence            348899999994 4 3666666665533489999 888877776542    2    22222   22333222211  234


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      .+|+|+....      .     ..+....+.|+++|.++..
T Consensus       216 g~D~vid~~g------~-----~~~~~~~~~l~~~G~iv~~  245 (343)
T 3gaz_A          216 GFDLVYDTLG------G-----PVLDASFSAVKRFGHVVSC  245 (343)
T ss_dssp             CEEEEEESSC------T-----HHHHHHHHHEEEEEEEEES
T ss_pred             CceEEEECCC------c-----HHHHHHHHHHhcCCeEEEE
Confidence            7999976432      1     2466677789999998865

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=83.78  E-value=1.9  Score=39.80  Aligned_cols=123  Identities=14%  Similarity=0.241  Sum_probs=68.3

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc-----------CC--CeEEEEeC---ChHHHHHHHHHHHh-----------c-----C
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA-----------LI--ANYIGIDV---ATSGIGEARDTWEN-----------Q-----R   78 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~-----------~~--~~v~giDi---s~~~l~~a~~~~~~-----------~-----~   78 (248)
                      +..+|||+|-|+|.........           ..  -++++++.   +++.+..+-..+..           -     +
T Consensus        66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (676)
T 3ps9_A           66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  145 (676)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred             CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence            4468999999999766443221           11  26899998   77777644332110           0     0


Q ss_pred             --------CCceEEEEEcCCCCCchhhhhcc-cCCceeEEEecc-chhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775           79 --------KNFIAEFFEADPCAENFETQMQE-KANQADLVCCFQ-HLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus        79 --------~~~~~~~~~~d~~~~~~~~~~~~-~~~~fD~V~~~~-~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                              ....+.+..+|+.+  ..+.+.. ....+|+|+.-. +...  .+.-....++..+.++++|||.+. +...
T Consensus       146 ~~~~~~~~~~~~l~l~~gd~~~--~l~~~~~~~~~~~d~~~~D~f~p~~--np~~w~~~~~~~l~~~~~~g~~~~-t~~~  220 (676)
T 3ps9_A          146 CHRLLLDAGRVTLDLWFGDINE--LTSQLDDSLNQKVDAWFLDGFAPAK--NPDMWTQNLFNAMARLARPGGTLA-TFTS  220 (676)
T ss_dssp             EEEEEEGGGTEEEEEEESCHHH--HGGGBCGGGTTCEEEEEECCSCGGG--CGGGSCHHHHHHHHHHEEEEEEEE-ESCC
T ss_pred             ceEEEecCCcEEEEEecCCHHH--HHHhcccccCCcccEEEECCCCCcC--ChhhhhHHHHHHHHHHhCCCCEEE-eccC
Confidence                    01234556666532  1111110 146799997743 2111  111124678899999999999875 4444


Q ss_pred             hhHHHHHHHH
Q 025775          149 SSTIWAKYQK  158 (248)
Q Consensus       149 ~~~~~~~~~~  158 (248)
                      ...+.+.+.+
T Consensus       221 ~~~vr~~L~~  230 (676)
T 3ps9_A          221 AGFVRRGLQD  230 (676)
T ss_dssp             CHHHHHHHHH
T ss_pred             cHHHHHHHHh
Confidence            4555555554

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=83.22  E-value=28  Score=32.05  Aligned_cols=166  Identities=13%  Similarity=0.107  Sum_probs=93.7

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc-C------CCeEEEEeCChHHHHHHH-HHHHhcC--------------C---------
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA-L------IANYIGIDVATSGIGEAR-DTWENQR--------------K---------   79 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~-~------~~~v~giDis~~~l~~a~-~~~~~~~--------------~---------   79 (248)
                      +...|+-||||-=.....+... +      ...+.-+|++-..+-..+ +.+....              .         
T Consensus       107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~  186 (695)
T 2zwa_A          107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLT  186 (695)
T ss_dssp             SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred             CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccccccccccccccccc
Confidence            3467999999876544444333 1      124555555544333333 3332110              0         


Q ss_pred             CceEEEEEcCCCCC-chhhhhcc----cCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE-ecCh----
Q 025775           80 NFIAEFFEADPCAE-NFETQMQE----KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI-TPDS----  149 (248)
Q Consensus        80 ~~~~~~~~~d~~~~-~~~~~~~~----~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~-~~~~----  149 (248)
                      ..+..++.+|+.+. .+...+..    .....-++++-.++.|  .+.+...++++.+.+.  ++|.+++. ..+.    
T Consensus       187 s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Y--l~~~~~~~ll~~~~~~--~~~~~~~~e~~~~~~~~  262 (695)
T 2zwa_A          187 TPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAY--MKPERSDSIIEATSKM--ENSHFIILEQLIPKGPF  262 (695)
T ss_dssp             CSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGG--SCHHHHHHHHHHHHTS--SSEEEEEEEECCTTCTT
T ss_pred             CCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEE--cCHHHHHHHHHHHhhC--CCceEEEEEeecCCCCC
Confidence            02478899999874 22222221    1234557777788888  6788899999999864  67766654 2222    


Q ss_pred             hHHHHHHHHhHhhhhCCCCCCCCCCCCCcccCceeEEEecccCCCCCcceeeeEEEEccCccCCCcceechHHHHHHHHH
Q 025775          150 STIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLARE  229 (248)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~  229 (248)
                      +...+.+.++...            .|..                           +. +.    ....+.+...+.+.+
T Consensus       263 d~f~~~m~~~~~~------------~g~~---------------------------l~-~~----~~~~~~~~~~~~~~~  298 (695)
T 2zwa_A          263 EPFSKQMLAHFKR------------NDSP---------------------------LQ-SV----LKYNTIESQVQRFNK  298 (695)
T ss_dssp             SHHHHHHHHHHHH------------TTCC---------------------------CC-GG----GTCCSHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHH------------cCCC---------------------------CC-cc----ccCCCHHHHHHHHHH
Confidence            3333333332211            0100                           00 00    122367788899999


Q ss_pred             cCcEEEEecCchHHH
Q 025775          230 AGLEYVEIQNLNEFY  244 (248)
Q Consensus       230 ~G~~~v~~~~f~~~~  244 (248)
                      +||+.+...++.+.|
T Consensus       299 ~Gw~~v~~~~~~~~y  313 (695)
T 2zwa_A          299 LGFAYVNVGDMFQLW  313 (695)
T ss_dssp             TTCCEEEEEEHHHHH
T ss_pred             CCCCCcceeeHHHHH
Confidence            999988888888877

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=82.97  E-value=8.2  Score=30.88  Aligned_cols=83  Identities=10%  Similarity=-0.001  Sum_probs=50.3

Q ss_pred             CCCeEEEEcCCCC---ccHhHHHHcCCCeEEEEeCC------------hHHHHHHHHHHHhcCCCceEEEEEcCCCCCch
Q 025775           31 PYVTVCDLYCGAG---VDVDKWETALIANYIGIDVA------------TSGIGEARDTWENQRKNFIAEFFEADPCAENF   95 (248)
Q Consensus        31 ~~~~VLDlGcG~G---~~~~~l~~~~~~~v~giDis------------~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~   95 (248)
                      .+.+||=-|++.|   ..+..++..+. +|+.+|.+            ++.++...+.....+  .++.++++|+.+..-
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~   88 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGA-DIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG--SRIVARQADVRDRES   88 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHT--CCEEEEECCTTCHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEecccccccccccccchHHHHHHHHHHHhcC--CeEEEEeCCCCCHHH
Confidence            4678888886654   22234444565 89999987            566655544443332  358899999987432


Q ss_pred             hhh----hcccCCceeEEEeccchh
Q 025775           96 ETQ----MQEKANQADLVCCFQHLQ  116 (248)
Q Consensus        96 ~~~----~~~~~~~fD~V~~~~~l~  116 (248)
                      ...    .....++.|+++...+..
T Consensus        89 v~~~~~~~~~~~g~id~lv~nAg~~  113 (278)
T 3sx2_A           89 LSAALQAGLDELGRLDIVVANAGIA  113 (278)
T ss_dssp             HHHHHHHHHHHHCCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCC
Confidence            111    111235789998876543

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=82.61  E-value=12  Score=29.51  Aligned_cols=79  Identities=11%  Similarity=-0.034  Sum_probs=49.8

Q ss_pred             CCCeEEEEcCCCC---ccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhcccC
Q 025775           31 PYVTVCDLYCGAG---VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKA  103 (248)
Q Consensus        31 ~~~~VLDlGcG~G---~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~~  103 (248)
                      .+.+||=.|++.|   ..+..++..+. +|+.+|.+++.++...+....     ++.++++|+.+..-..    ...+..
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~~~   80 (259)
T 4e6p_A            7 EGKSALITGSARGIGRAFAEAYVREGA-TVAIADIDIERARQAAAEIGP-----AAYAVQMDVTRQDSIDAAIAATVEHA   80 (259)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCT-----TEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCC-----CceEEEeeCCCHHHHHHHHHHHHHHc
Confidence            4567888886654   12234444565 899999998877766554421     3788999998744211    111234


Q ss_pred             CceeEEEeccch
Q 025775          104 NQADLVCCFQHL  115 (248)
Q Consensus       104 ~~fD~V~~~~~l  115 (248)
                      ++.|+++...+.
T Consensus        81 g~id~lv~~Ag~   92 (259)
T 4e6p_A           81 GGLDILVNNAAL   92 (259)
T ss_dssp             SSCCEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            579998886654

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=82.27  E-value=6.3  Score=31.22  Aligned_cols=81  Identities=10%  Similarity=-0.077  Sum_probs=53.6

Q ss_pred             CCCeEEEEcCCCCc---cHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhcccC
Q 025775           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKA  103 (248)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~~  103 (248)
                      .+.+||=.|++.|-   .+..++..+. +|+.+|.+++.++.+.+.+...+  .++.++++|+.+..-..    ..... 
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~-   81 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNGEKLAPLVAEIEAAG--GRIVARSLDARNEDEVTAFLNAADAH-   81 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECcCCCHHHHHHHHHHHHhh-
Confidence            46678888877652   2234444565 89999999998887777665443  35889999998753211    12223 


Q ss_pred             CceeEEEeccch
Q 025775          104 NQADLVCCFQHL  115 (248)
Q Consensus       104 ~~fD~V~~~~~l  115 (248)
                      ++.|+++...+.
T Consensus        82 g~id~lv~nAg~   93 (252)
T 3h7a_A           82 APLEVTIFNVGA   93 (252)
T ss_dssp             SCEEEEEECCCC
T ss_pred             CCceEEEECCCc
Confidence            689998876654

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=82.25  E-value=1.5  Score=36.25  Aligned_cols=90  Identities=12%  Similarity=0.009  Sum_probs=55.1

Q ss_pred             eEEEEcC-C-CCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEe
Q 025775           34 TVCDLYC-G-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (248)
Q Consensus        34 ~VLDlGc-G-~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~  111 (248)
                      +||=.|+ | .|..+..+++..-.+|+++|.+++-++.+++.-..      ..+-..+...  . ..+  ..+.+|+|+-
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~lGa~------~vi~~~~~~~--~-~~~--~~~~~d~v~d  217 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSLGAN------RILSRDEFAE--S-RPL--EKQLWAGAID  217 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTCS------EEEEGGGSSC--C-CSS--CCCCEEEEEE
T ss_pred             eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCC------EEEecCCHHH--H-Hhh--cCCCccEEEE
Confidence            4999997 4 36666666665334899999999988888653111      1111111110  0 001  2357998865


Q ss_pred             ccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       112 ~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      ..       ..    ..++.+.+.|+++|.++..
T Consensus       218 ~~-------g~----~~~~~~~~~l~~~G~iv~~  240 (324)
T 3nx4_A          218 TV-------GD----KVLAKVLAQMNYGGCVAAC  240 (324)
T ss_dssp             SS-------CH----HHHHHHHHTEEEEEEEEEC
T ss_pred             CC-------Cc----HHHHHHHHHHhcCCEEEEE
Confidence            32       11    1577788899999999876

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=82.05  E-value=2  Score=36.37  Aligned_cols=96  Identities=21%  Similarity=0.139  Sum_probs=56.6

Q ss_pred             cC-CCCeEEEEcCCC-CccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           29 SH-PYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        29 ~~-~~~~VLDlGcG~-G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      .. ++.+||=+|+|. |..+..++.....+|+++|.+++.++.+.+.+   +.   ...+  |..+..   .+....+.+
T Consensus       184 ~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~l---Ga---~~v~--~~~~~~---~~~~~~~~~  252 (366)
T 1yqd_A          184 LDEPGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNF---GA---DSFL--VSRDQE---QMQAAAGTL  252 (366)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTS---CC---SEEE--ETTCHH---HHHHTTTCE
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc---CC---ceEE--eccCHH---HHHHhhCCC
Confidence            45 789999999864 55555555543348999999998877665332   10   1122  222211   111123479


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      |+|+.......          .++...+.|+++|.++..
T Consensus       253 D~vid~~g~~~----------~~~~~~~~l~~~G~iv~~  281 (366)
T 1yqd_A          253 DGIIDTVSAVH----------PLLPLFGLLKSHGKLILV  281 (366)
T ss_dssp             EEEEECCSSCC----------CSHHHHHHEEEEEEEEEC
T ss_pred             CEEEECCCcHH----------HHHHHHHHHhcCCEEEEE
Confidence            99976543211          233455678999998865

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=82.02  E-value=0.9  Score=38.39  Aligned_cols=95  Identities=21%  Similarity=0.119  Sum_probs=56.5

Q ss_pred             cC-CCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCc
Q 025775           29 SH-PYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (248)
Q Consensus        29 ~~-~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (248)
                      .. ++.+||=+|+|. |..+..++.. +. +|+++|.+++-++.+++.+...      ..+..  .+.+   .+....+.
T Consensus       177 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~~~~~~~~~~~~~lGa~------~vi~~--~~~~---~~~~~~~g  244 (357)
T 2cf5_A          177 LKQPGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSNKKREEALQDLGAD------DYVIG--SDQA---KMSELADS  244 (357)
T ss_dssp             TTSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSTTHHHHHHTTSCCS------CEEET--TCHH---HHHHSTTT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHcCCc------eeecc--ccHH---HHHHhcCC
Confidence            45 889999999864 5555555554 55 8999999988777665222110      11211  1111   11112347


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +|+|+......          ..++...+.|+++|.++..
T Consensus       245 ~D~vid~~g~~----------~~~~~~~~~l~~~G~iv~~  274 (357)
T 2cf5_A          245 LDYVIDTVPVH----------HALEPYLSLLKLDGKLILM  274 (357)
T ss_dssp             EEEEEECCCSC----------CCSHHHHTTEEEEEEEEEC
T ss_pred             CCEEEECCCCh----------HHHHHHHHHhccCCEEEEe
Confidence            99997644221          1244566799999998876

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=81.91  E-value=12  Score=30.26  Aligned_cols=112  Identities=13%  Similarity=0.079  Sum_probs=64.1

Q ss_pred             CCCeEEEEcCCCCc---cHhHHHHcCCCeEEEEeCCh--HHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhcc
Q 025775           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVAT--SGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQE  101 (248)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~l~~~~~~~v~giDis~--~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~  101 (248)
                      .+.+||=.|++.|-   .+..++..+. +|+.+|.+.  ...+...+.....+  .++.++++|+.+..-..    ...+
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~  124 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAINYLPAEEEDAQQVKALIEECG--RKAVLLPGDLSDESFARSLVHKARE  124 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCGGGHHHHHHHHHHHHHTT--CCEEECCCCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchhHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence            45788888876542   2233444455 899988873  33444444333322  34888999998743211    1111


Q ss_pred             cCCceeEEEeccchhhhc-----CCHHHHH-----------HHHHHHhccccCCcEEEEE
Q 025775          102 KANQADLVCCFQHLQMCF-----ETEERAR-----------RLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       102 ~~~~fD~V~~~~~l~~~~-----~~~~~~~-----------~~l~~~~~~LkpgG~~i~~  145 (248)
                      ..+..|+++...+.....     .+.++.+           .+++.+...++++|.++.+
T Consensus       125 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~i  184 (294)
T 3r3s_A          125 ALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITT  184 (294)
T ss_dssp             HHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEE
T ss_pred             HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEE
Confidence            235789988766542110     1233333           3556677788888988876

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=81.78  E-value=16  Score=29.09  Aligned_cols=112  Identities=12%  Similarity=-0.079  Sum_probs=63.8

Q ss_pred             CCCeEEEEcCCCCc---cHhHHHHcCCCeEEEEeCC-hHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh----hccc
Q 025775           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVA-TSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQEK  102 (248)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~l~~~~~~~v~giDis-~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~  102 (248)
                      .+.++|=.|++.|-   .+..++..+. +|+.++.. ...++...+.....+  .++.++++|+.+..-...    ....
T Consensus        17 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   93 (270)
T 3is3_A           17 DGKVALVTGSGRGIGAAVAVHLGRLGA-KVVVNYANSTKDAEKVVSEIKALG--SDAIAIKADIRQVPEIVKLFDQAVAH   93 (270)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            46778888866542   2234444465 78887764 455555544444332  358899999987432111    1112


Q ss_pred             CCceeEEEeccchhhh----cCCHHHHH-----------HHHHHHhccccCCcEEEEE
Q 025775          103 ANQADLVCCFQHLQMC----FETEERAR-----------RLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       103 ~~~fD~V~~~~~l~~~----~~~~~~~~-----------~~l~~~~~~LkpgG~~i~~  145 (248)
                      .++.|+++...+....    -.+.++.+           .+++.+...|+++|.++..
T Consensus        94 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~i  151 (270)
T 3is3_A           94 FGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLT  151 (270)
T ss_dssp             HSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEE
Confidence            3578998876544211    01333332           3455677778888888776

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=81.52  E-value=13  Score=29.89  Aligned_cols=79  Identities=11%  Similarity=-0.015  Sum_probs=49.7

Q ss_pred             CCCeEEEEcCCCCc---cHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh----hcccC
Q 025775           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQEKA  103 (248)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~~  103 (248)
                      .+.+||=.|++.|-   .+..++..+. +|+.+|.+++.++.+.+...     .++.++++|+.+..-...    ..+..
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~~~~~  101 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLADEGC-HVLCADIDGDAADAAATKIG-----CGAAACRVDVSDEQQIIAMVDACVAAF  101 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHC-----SSCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcC-----CcceEEEecCCCHHHHHHHHHHHHHHc
Confidence            46678877766552   2234444565 89999999988776655541     237889999987532111    11123


Q ss_pred             CceeEEEeccch
Q 025775          104 NQADLVCCFQHL  115 (248)
Q Consensus       104 ~~fD~V~~~~~l  115 (248)
                      ++.|+++...+.
T Consensus       102 g~iD~lvnnAg~  113 (277)
T 3gvc_A          102 GGVDKLVANAGV  113 (277)
T ss_dssp             SSCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            578998876654

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=81.15  E-value=15  Score=29.05  Aligned_cols=112  Identities=13%  Similarity=-0.007  Sum_probs=64.5

Q ss_pred             CCCeEEEEcCCCCc---cHhHHHHcCCCeEEEE-eCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh----hccc
Q 025775           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGI-DVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQEK  102 (248)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~l~~~~~~~v~gi-Dis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~  102 (248)
                      .+.+||=-|++.|-   .+..++..+. +|+.+ +.++...+.+.+.....+  .++.++++|+.+..-...    ....
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGA-NVVLTYNGAAEGAATAVAEIEKLG--RSALAIKADLTNAAEVEAAISAAADK   83 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSSCHHHHHHHHHHHTTT--SCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            46778888876652   2234444565 77777 777777666655554432  347889999987432111    1112


Q ss_pred             CCceeEEEeccchh-h--hc--CCHHHHH-----------HHHHHHhccccCCcEEEEE
Q 025775          103 ANQADLVCCFQHLQ-M--CF--ETEERAR-----------RLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       103 ~~~fD~V~~~~~l~-~--~~--~~~~~~~-----------~~l~~~~~~LkpgG~~i~~  145 (248)
                      -++.|+++...+.. .  .+  .+.+..+           .+++.+...|+++|.++..
T Consensus        84 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~i  142 (259)
T 3edm_A           84 FGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTF  142 (259)
T ss_dssp             HCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             hCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            35789888765432 0  00  1233222           3555666777778887766

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=80.98  E-value=5.5  Score=31.11  Aligned_cols=99  Identities=9%  Similarity=-0.078  Sum_probs=58.5

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc---CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~---~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      ...+|+=+|||.  ....++..   ... |+++|.+++.++.+.     .+    +.++.+|..+.......  .-...|
T Consensus         8 ~~~~viI~G~G~--~G~~la~~L~~~g~-v~vid~~~~~~~~~~-----~~----~~~i~gd~~~~~~l~~a--~i~~ad   73 (234)
T 2aef_A            8 KSRHVVICGWSE--STLECLRELRGSEV-FVLAEDENVRKKVLR-----SG----ANFVHGDPTRVSDLEKA--NVRGAR   73 (234)
T ss_dssp             --CEEEEESCCH--HHHHHHHHSTTSEE-EEEESCGGGHHHHHH-----TT----CEEEESCTTCHHHHHHT--TCTTCS
T ss_pred             CCCEEEEECCCh--HHHHHHHHHHhCCe-EEEEECCHHHHHHHh-----cC----CeEEEcCCCCHHHHHhc--Ccchhc
Confidence            356788888864  33333332   223 999999998776554     22    67899999765432211  235688


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChh
Q 025775          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (248)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~  150 (248)
                      +|++..      .+. .....+....+.+.|+..++....+..
T Consensus        74 ~vi~~~------~~d-~~n~~~~~~a~~~~~~~~iia~~~~~~  109 (234)
T 2aef_A           74 AVIVDL------ESD-SETIHCILGIRKIDESVRIIAEAERYE  109 (234)
T ss_dssp             EEEECC------SCH-HHHHHHHHHHHHHCSSSEEEEECSSGG
T ss_pred             EEEEcC------CCc-HHHHHHHHHHHHHCCCCeEEEEECCHh
Confidence            887643      222 233444455666788878777755543

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=80.88  E-value=15  Score=28.91  Aligned_cols=111  Identities=9%  Similarity=-0.059  Sum_probs=62.9

Q ss_pred             CCCeEEEEcCCCCccHh----HHHH-cCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh-hh---cc
Q 025775           31 PYVTVCDLYCGAGVDVD----KWET-ALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET-QM---QE  101 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~----~l~~-~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~---~~  101 (248)
                      ++.+||=.|+ +|+...    .++. .+. +|++++.++..++...+.....+  .++.++.+|+.+..-.. .+   ..
T Consensus         3 ~~k~vlITGa-sggIG~~~a~~L~~~~g~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~   78 (276)
T 1wma_A            3 GIHVALVTGG-NKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRK   78 (276)
T ss_dssp             CCCEEEESSC-SSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHHhcCC-eEEEEeCChHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHH
Confidence            3566776664 444433    3344 455 89999999887766655554332  24788999998743211 11   11


Q ss_pred             cCCceeEEEeccchhhh---cCC-HHHH-----------HHHHHHHhccccCCcEEEEE
Q 025775          102 KANQADLVCCFQHLQMC---FET-EERA-----------RRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       102 ~~~~fD~V~~~~~l~~~---~~~-~~~~-----------~~~l~~~~~~LkpgG~~i~~  145 (248)
                      ..+..|+|+...+....   ... .++.           ..+++.+...++++|.++..
T Consensus        79 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~  137 (276)
T 1wma_A           79 EYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNV  137 (276)
T ss_dssp             HHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             hcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEE
Confidence            12478988876543210   011 1222           23555666777777887766

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=80.78  E-value=4.1  Score=35.53  Aligned_cols=45  Identities=20%  Similarity=0.158  Sum_probs=34.6

Q ss_pred             CCeEEEEcCCCCccHhHHHHc----C--CCeEEEEeCChHHHHHHHHHHHh
Q 025775           32 YVTVCDLYCGAGVDVDKWETA----L--IANYIGIDVATSGIGEARDTWEN   76 (248)
Q Consensus        32 ~~~VLDlGcG~G~~~~~l~~~----~--~~~v~giDis~~~l~~a~~~~~~   76 (248)
                      ...|+|+|.|+|.++..++..    .  ..++..+++|+...+.-++++..
T Consensus       138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~  188 (432)
T 4f3n_A          138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA  188 (432)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred             CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence            479999999999977665432    1  34899999999988777766653

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=80.72  E-value=12  Score=29.68  Aligned_cols=81  Identities=7%  Similarity=-0.106  Sum_probs=52.4

Q ss_pred             CCCeEEEEcCCCCccH----hHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh----hccc
Q 025775           31 PYVTVCDLYCGAGVDV----DKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQEK  102 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~----~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~  102 (248)
                      .+.+||=.|++.| ..    ..++..+. +|+.+|.+++.++...+.....+  .++.++.+|+.+..-...    +...
T Consensus        28 ~~k~vlITGas~g-IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~  103 (262)
T 3rkr_A           28 SGQVAVVTGASRG-IGAAIARKLGSLGA-RVVLTARDVEKLRAVEREIVAAG--GEAESHACDLSHSDAIAAFATGVLAA  103 (262)
T ss_dssp             TTCEEEESSTTSH-HHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCh-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhC--CceeEEEecCCCHHHHHHHHHHHHHh
Confidence            5678888886654 33    33344455 89999999988887766665433  358899999987432111    1112


Q ss_pred             CCceeEEEeccch
Q 025775          103 ANQADLVCCFQHL  115 (248)
Q Consensus       103 ~~~fD~V~~~~~l  115 (248)
                      .++.|+++...+.
T Consensus       104 ~g~id~lv~~Ag~  116 (262)
T 3rkr_A          104 HGRCDVLVNNAGV  116 (262)
T ss_dssp             HSCCSEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            3578998876654

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=80.63  E-value=1.4  Score=42.79  Aligned_cols=54  Identities=19%  Similarity=0.235  Sum_probs=41.2

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCC-CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCC
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADP   90 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~-~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~   90 (248)
                      +..+++||-||.|++...+..+++ ..+.++|+++.+++.-+..+..      ..++..|+
T Consensus       539 ~~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~p~------~~~~~~DI  593 (1002)
T 3swr_A          539 PKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNPG------STVFTEDC  593 (1002)
T ss_dssp             CCEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHCTT------SEEECSCH
T ss_pred             CCCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCCC------CccccccH
Confidence            456899999999999999988886 5688999999988765544332      34566664

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=80.28  E-value=20  Score=28.25  Aligned_cols=111  Identities=9%  Similarity=-0.096  Sum_probs=65.3

Q ss_pred             CCCeEEEEcCC-CCccHh----HHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhcc
Q 025775           31 PYVTVCDLYCG-AGVDVD----KWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQE  101 (248)
Q Consensus        31 ~~~~VLDlGcG-~G~~~~----~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~  101 (248)
                      ++.+||=.|++ +|+...    .++..+. +|+.++.+....+.+++.....+   ++.++.+|+.+..-..    ....
T Consensus        13 ~~k~vlITGa~~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~~~~~v~~~~~~~~~   88 (271)
T 3ek2_A           13 DGKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFG---SELVFPCDVADDAQIDALFASLKT   88 (271)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHHcCC-CEEEEecchhhHHHHHHHHHHcC---CcEEEECCCCCHHHHHHHHHHHHH
Confidence            57889988865 233333    3344455 89999988765555544433332   2678999998743211    1112


Q ss_pred             cCCceeEEEeccchhhh-------c--CCHHHHH-----------HHHHHHhccccCCcEEEEE
Q 025775          102 KANQADLVCCFQHLQMC-------F--ETEERAR-----------RLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       102 ~~~~fD~V~~~~~l~~~-------~--~~~~~~~-----------~~l~~~~~~LkpgG~~i~~  145 (248)
                      ..++.|+++...+....       .  .+.+...           .+++.+...|+++|.++..
T Consensus        89 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~i  152 (271)
T 3ek2_A           89 HWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTL  152 (271)
T ss_dssp             HCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             HcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEE
Confidence            34679998876654321       0  2333333           3455666777778887766

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=80.05  E-value=5  Score=33.07  Aligned_cols=92  Identities=11%  Similarity=-0.008  Sum_probs=55.4

Q ss_pred             cCCCCeEEEEc-CCC-CccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCc-hhhhhcccCCc
Q 025775           29 SHPYVTVCDLY-CGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN-FETQMQEKANQ  105 (248)
Q Consensus        29 ~~~~~~VLDlG-cG~-G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~~~~  105 (248)
                      +.++.+||=+| +|. |..+..+++....++++++ ++..++.+++.    +.   ...+  |..+.+ +.+    .-..
T Consensus       150 ~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~-~~~~~~~~~~l----Ga---~~~i--~~~~~~~~~~----~~~g  215 (321)
T 3tqh_A          150 VKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA-SKRNHAFLKAL----GA---EQCI--NYHEEDFLLA----ISTP  215 (321)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE-CHHHHHHHHHH----TC---SEEE--ETTTSCHHHH----CCSC
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe-ccchHHHHHHc----CC---CEEE--eCCCcchhhh----hccC
Confidence            45899999996 664 6666666665334899987 55546555442    21   1122  222233 322    1257


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +|+|+....       .   . .+....++|+++|.++..
T Consensus       216 ~D~v~d~~g-------~---~-~~~~~~~~l~~~G~iv~~  244 (321)
T 3tqh_A          216 VDAVIDLVG-------G---D-VGIQSIDCLKETGCIVSV  244 (321)
T ss_dssp             EEEEEESSC-------H---H-HHHHHGGGEEEEEEEEEC
T ss_pred             CCEEEECCC-------c---H-HHHHHHHhccCCCEEEEe
Confidence            999975432       1   1 236678999999999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	248
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	3e-33
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	6e-09
d2g72a1	263	c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr	3e-07
d1wzna1	251	c.66.1.43 (A:1-251) Hypothetical methyltransferase	1e-06
d2a14a1	257	c.66.1.15 (A:5-261) Indolethylamine N-methyltransf	1e-05
d1jqea_	280	c.66.1.19 (A:) Histamine methyltransferase {Human	2e-05
d2gh1a1	281	c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac	5e-04
d1zx0a1	229	c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe	0.001
d1y8ca_	246	c.66.1.43 (A:) Putative methyltransferase CAC2371	0.002
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	0.002
d1p91a_	268	c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher	0.004

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score =  118 bits (297), Expect = 3e-33
 Identities = 54/230 (23%), Positives = 93/230 (40%), Gaps = 23/230 (10%)

Query: 19  FAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR 78
           F K  LI++Y+    +V DL CG G D+ K+E A I  Y G+D+A   I +AR    N +
Sbjct: 12  FIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMK 71

Query: 79  KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKP 138
           + F   F   D    + +   +        +         F T E      +N++  L+P
Sbjct: 72  RRFKVFFRAQDSYGRHMDLGKEFDV-----ISSQFSFHYAFSTSESLDIAQRNIARHLRP 126

Query: 139 GGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLF 198
           GGYF+   P    I  +Y++   +                   + Y I  E  E+     
Sbjct: 127 GGYFIMTVPSRDVILERYKQGRMSN------------------DFYKIELEKMEDVPMES 168

Query: 199 GKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNR 248
            ++Y+    + ++   +  V F  ++   +  GL  VE +   +FY+D  
Sbjct: 169 VREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGFIDFYEDEG 218

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.0 bits (126), Expect = 6e-09
 Identities = 44/249 (17%), Positives = 80/249 (32%), Gaps = 24/249 (9%)

Query: 12  THHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEAR 71
           T  R  E+    L  +  H    V D+ CG GVD          +   +D +   +  A 
Sbjct: 37  TRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIML-VEEGFSVTSVDASDKMLKYAL 95

Query: 72  DTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC----FQHLQMCFETEERARR 127
               N+RK    + +  +        +     +  D V C    F HL      +   R 
Sbjct: 96  KERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRL 155

Query: 128 LLQNVSSLLKPGGYFLGITPDSSTIWAK---------YQKNVEAYHNRSSSMKPNLVPNC 178
            L+N++S+++PGG  +    +   I +          Y K+       +S +  N   + 
Sbjct: 156 ALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAHM 215

Query: 179 IRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQ 238
           +  + Y +              K++L         +       S   L +EA     +  
Sbjct: 216 VTLD-YTVQVPGAGRDGAPGFSKFRL---------SYYPHCLASFTELVQEAFGGRCQHS 265

Query: 239 NLNEFYDDN 247
            L +F    
Sbjct: 266 VLGDFKPYR 274

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (113), Expect = 3e-07
 Identities = 22/181 (12%), Positives = 44/181 (24%), Gaps = 31/181 (17%)

Query: 13  HHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARD 72
             +L   A+            T+ D+  G  V       +   +    D       E   
Sbjct: 38  PWKLRCLAQ--TFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGR 95

Query: 73  TWENQRKNF-----------------------------IAEFFEADPCAENFETQMQEKA 103
             + +   F                             +      D              
Sbjct: 96  WLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAP 155

Query: 104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAY 163
             AD +     L+         +R L ++++LL+PGG+ L I     + +   +  +   
Sbjct: 156 LPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVV 215

Query: 164 H 164
            
Sbjct: 216 P 216

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 45.9 bits (107), Expect = 1e-06
 Identities = 40/231 (17%), Positives = 66/231 (28%), Gaps = 19/231 (8%)

Query: 7   PRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSG 66
            R         +F +    +        V DL CG G+   +            +     
Sbjct: 17  RRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLEL----------AERGYEV 66

Query: 67  IGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERAR 126
           +G        +     A+           +       N+ D V  F    + +  EE  R
Sbjct: 67  VGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFST-IMYFDEEDLR 125

Query: 127 RLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVI 186
           +L   V+  LKPGG F+   P     W    ++     N     +  ++ +    E  V 
Sbjct: 126 KLFSKVAEALKPGGVFITDFPC----WFYGGRDGPVVWNEQKGEEKLVIMDWREVEPAVQ 181

Query: 187 TFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEI 237
               +     L        F  D         + P  +RL  E   E V+I
Sbjct: 182 KLRFKRLVQILRPNGEVKAFLVDDELNI----YTPREVRLLAEKYFEKVKI 228

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 1e-05
 Identities = 24/185 (12%), Positives = 46/185 (24%), Gaps = 29/185 (15%)

Query: 7   PRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSG 66
           P +E+    L    K            T+ D+  G  +           +    D     
Sbjct: 29  PEAEMLKFNLECLHK--TFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRN 86

Query: 67  IGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA----------------------- 103
             E     + +   +         C     +   E+                        
Sbjct: 87  REELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLA 146

Query: 104 ----NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKN 159
                 AD V     ++    + +  R  L N++SLLKPGG+ +         +   ++ 
Sbjct: 147 PAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKRE 206

Query: 160 VEAYH 164
                
Sbjct: 207 FSCVA 211

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 2e-05
 Identities = 28/198 (14%), Positives = 57/198 (28%), Gaps = 19/198 (9%)

Query: 13  HHRLYEFAKTALIKIYS-----HPYVTVCDLYCGAGV-------DVDKWETALIANYIGI 60
           H  + EF    L  I          + +  +  GAG         V      +  N   +
Sbjct: 17  HQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVV 76

Query: 61  DVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQADLVCCFQHLQMC 118
           + +   I + ++           +F      +  ++++M E  +  + D +   Q L   
Sbjct: 77  EPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYV 136

Query: 119 FETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNC 178
            +        L+   SLL      L I    S+ W K  K           +   +  + 
Sbjct: 137 KDIPA----TLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKY-GSRFPQDDLCQYITSDD 191

Query: 179 IRSESYVITFEVEEEKFP 196
           +      +  + E     
Sbjct: 192 LTQMLDNLGLKYECYDLL 209

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

 Score = 37.9 bits (87), Expect = 5e-04
 Identities = 20/135 (14%), Positives = 41/135 (30%), Gaps = 11/135 (8%)

Query: 34  TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE 93
            + D  CG G     +   ++   +      +GI          R+ F    ++++    
Sbjct: 30  HIVDYGCGYG-----YLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFL-- 82

Query: 94  NFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIW 153
             +    E  ++ D+  C                +LQ +   +K GG  +   P   +  
Sbjct: 83  EGDATEIELNDKYDIAICH----AFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNM 138

Query: 154 AKYQKNVEAYHNRSS 168
           A Y  + E       
Sbjct: 139 ASYLLDGEKQSEFIQ 153

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 0.001
 Identities = 22/143 (15%), Positives = 40/143 (27%), Gaps = 7/143 (4%)

Query: 23  ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFI 82
           AL    S     V ++  G  +   K + A I  +  I+         RD W  ++ + +
Sbjct: 45  ALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRD-WAPRQTHKV 103

Query: 83  AEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYF 142
                                   D     +      +       +  +   LLKPGG  
Sbjct: 104 IPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNF----IKNHAFRLLKPGGVL 159

Query: 143 L--GITPDSSTIWAKYQKNVEAY 163
               +T     + +KY      +
Sbjct: 160 TYCNLTSWGELMKSKYSDITIMF 182

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 29/230 (12%), Positives = 64/230 (27%), Gaps = 22/230 (9%)

Query: 8   RSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGI 67
           R+++ + +  +F         +  +    DL CG G       T  +        A    
Sbjct: 15  RADVDYKKWSDFII-EKCVENNLVFDDYLDLACGTG-----NLTENLCPKFKNTWAVDLS 68

Query: 68  GEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARR 127
            E     EN+ ++   +   A     N     +          C           +  ++
Sbjct: 69  QEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLI-----TCCLDSTNYIIDSDDLKK 123

Query: 128 LLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVIT 187
             + VS+ LK GG F+        +      N   Y +                  Y+  
Sbjct: 124 YFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISF 183

Query: 188 FEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEI 237
           F  + E +  F ++++ +                 + +  +   L  ++ 
Sbjct: 184 FVRDGEFYKRFDEEHEERA-----------YKEEDIEKYLKHGQLNILDK 222

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 30/165 (18%), Positives = 49/165 (29%), Gaps = 22/165 (13%)

Query: 13  HHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARD 72
           HH L    KTA  +        V D+  GAG       +  +   IG+D           
Sbjct: 2   HHSLGLMIKTAECR----AEHRVLDIGAGAG-HTALAFSPYVQECIGVDA---------- 46

Query: 73  TWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNV 132
             +   +   +   E       F+    E     D        +         R+ ++ V
Sbjct: 47  -TKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREV 105

Query: 133 SSLLKPGGYFLGIT------PDSSTIWAKYQKNVEAYHNRSSSMK 171
           + +LK  G FL +       P          +  +  H R SS+ 
Sbjct: 106 ARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLS 150

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

 Score = 35.7 bits (81), Expect = 0.004
 Identities = 21/184 (11%), Positives = 46/184 (25%), Gaps = 24/184 (13%)

Query: 13  HHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEAR 71
           +  L +     L +        V D+ CG G     +  AL      G+D          
Sbjct: 66  YQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLD---------- 115

Query: 72  DTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQN 131
                      A+ +           ++       D +                    + 
Sbjct: 116 --VSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP-----------CKAEE 162

Query: 132 VSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVE 191
           ++ ++KPGG+ +  TP    +           H  +   +        +S        + 
Sbjct: 163 LARVVKPGGWVITATPGPRHLMELKGLIYNEVHLHAPHAEQLEGFTLQQSAELCYPMRLR 222

Query: 192 EEKF 195
            ++ 
Sbjct: 223 GDEA 226

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	248
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	100.0
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.89
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.87
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.86
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.86
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.86
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.85
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.84
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.84
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.83
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.83
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.81
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.81
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.81
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.81
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.81
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.8
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.79
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.78
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.77
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.76
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.75
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.75
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.74
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.73
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.72
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.72
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.7
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.69
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.68
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.67
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.65
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.64
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.6
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.57
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.57
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.57
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.55
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.54
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.53
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.53
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.49
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.48
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.48
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.47
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.46
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.45
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.44
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.42
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.42
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.4
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.39
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.34
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.33
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.31
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.31
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.28
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.27
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	99.26
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.25
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.18
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.16
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.16
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.14
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.11
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.11
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.09
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.05
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.01
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.94
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.86
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.82
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.82
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.79
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.74
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.68
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.67
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.64
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.63
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.62
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.61
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.6
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.6
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.57
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.53
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.53
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.48
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.33
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.32
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.29
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.24
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.19
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.14
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.11
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	98.09
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.06
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	97.95
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	97.85
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	97.73
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	97.48
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	97.07
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	96.95
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	96.92
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	96.92
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	96.76
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.75
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.64
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.62
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.52
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	96.45
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.4
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.27
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	96.26
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.0
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	95.97
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	95.77
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	95.62
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	95.48
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	95.48
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	95.47
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.43
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	95.1
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	94.54
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	94.35
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	94.23
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	93.73
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	93.72
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	93.7
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	93.62
d1rjda_	328	Leucine carboxy methyltransferase Ppm1 {Baker's ye	93.23
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	93.23
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	93.11
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	93.1
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	93.1
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	92.75
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	92.65
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	91.22
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	91.14
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	90.45
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	90.06
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	89.76
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	89.73
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	89.71
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	89.58
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	88.98
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	88.47
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	87.48
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	86.72
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	86.71
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	86.47
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	85.16
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	84.8
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	84.13
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	83.75
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	83.21
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	82.57
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	82.46
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	82.21
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	81.95
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	81.84
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	81.18
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	80.99
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	80.84
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	80.7
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	80.3

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=100.00  E-value=2.1e-39  Score=267.37  Aligned_cols=212  Identities=26%  Similarity=0.465  Sum_probs=187.0

Q ss_pred             hhhhHhHHHHHHHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC
Q 025775           13 HHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA   92 (248)
Q Consensus        13 ~~~~~~~~~~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~   92 (248)
                      ++.++||||+.||+.+.+++.+|||||||+|.++..|+..+.++|+|+|+|+.||+.|++++...+...++.|.++|+..
T Consensus         6 ~r~~~N~vK~~lI~~~~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~   85 (252)
T d1ri5a_           6 IRNANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYG   85 (252)
T ss_dssp             HHHHHHHHHHHHHHHHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTT
T ss_pred             HHHHHHHHHHHHHHHhCCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhh
Confidence            46688999999999999999999999999999999998888879999999999999999998877666679999999976


Q ss_pred             CchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHHHhHhhhhCCCCCCCC
Q 025775           93 ENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKP  172 (248)
Q Consensus        93 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (248)
                      ..+.     ..++||+|+|.+++||++.+.+++..+++++.++|+|||+|++++|+.+.+...+.+.             
T Consensus        86 ~~~~-----~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~~~i~~~~~~~-------------  147 (252)
T d1ri5a_          86 RHMD-----LGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQG-------------  147 (252)
T ss_dssp             SCCC-----CSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHT-------------
T ss_pred             hccc-----ccccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecCHHHHHHHHHhc-------------
Confidence            6542     3568999999999999999999999999999999999999999999999988877641             


Q ss_pred             CCCCCcccCceeEEEecccCCCCCcceeeeEEEEccCccCCCcceechHHHHHHHHHcCcEEEEecCchHHHhhc
Q 025775          173 NLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDN  247 (248)
Q Consensus       173 ~~~g~~~~~~~~~~~~~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~G~~~v~~~~f~~~~~~~  247 (248)
                       .+++    +.|++.++.........+..|.+++.+.+.+++||+++++.|.++++++||++++..+|.+||+++
T Consensus       148 -~~~~----~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~E~l~~~~~l~~~~~~~g~~lv~~~~f~~~~~~~  217 (252)
T d1ri5a_         148 -RMSN----DFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGFIDFYEDE  217 (252)
T ss_dssp             -CCBC----SSEEEECCCCSSCCTTTCCEEEEEETTSCSSEEEECCCHHHHHHHHHTTTEEEEEEEEHHHHHHHH
T ss_pred             -ccCC----ceEEEecccccCCcCcCceEEEEEcccccccCcccccCHHHHHHHHHHcCCEEEEEecHHHHHHHH
Confidence             3344    458888876555555677899999999888899999999999999999999999999999999753

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.89  E-value=1.5e-22  Score=164.89  Aligned_cols=117  Identities=19%  Similarity=0.263  Sum_probs=97.3

Q ss_pred             HHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCC
Q 025775           25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN  104 (248)
Q Consensus        25 i~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  104 (248)
                      +.....++.+|||+|||+|..+..++..+. +++|+|+|+.||+.|+++....+  .++.++++|+.+.++       ++
T Consensus        31 ~~~~~~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~~--~~v~~~~~d~~~~~~-------~~  100 (246)
T d1y8ca_          31 CVENNLVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQG--LKPRLACQDISNLNI-------NR  100 (246)
T ss_dssp             HHTTTCCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTT--CCCEEECCCGGGCCC-------SC
T ss_pred             HHHhCCCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhccccccccC--ccceeeccchhhhcc-------cc
Confidence            333445678999999999999999988877 89999999999999999887654  358999999866543       57


Q ss_pred             ceeEEEecc-chhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHH
Q 025775          105 QADLVCCFQ-HLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (248)
Q Consensus       105 ~fD~V~~~~-~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~  152 (248)
                      +||+|+|.+ ++++ +.+.+++..++++++++|+|||.|++.+++...+
T Consensus       101 ~fD~i~~~~~~~~~-~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~  148 (246)
T d1y8ca_         101 KFDLITCCLDSTNY-IIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKL  148 (246)
T ss_dssp             CEEEEEECTTGGGG-CCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHH
T ss_pred             cccccceeeeeeec-cCCHHHHHHHHHHHHHhCCCCeEEEEEeCCHHHH
Confidence            899999875 4554 5678899999999999999999999988776544

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.87  E-value=2.1e-21  Score=156.30  Aligned_cols=109  Identities=17%  Similarity=0.216  Sum_probs=91.9

Q ss_pred             HhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           27 IYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        27 ~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      .-++++.+|||||||+|..+..++..+. +|+|+|+|+.|++.|+++....+. .++.+.++|+.+.++      ++++|
T Consensus        11 ~~l~~~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~A~~~~~~~~~-~~i~~~~~d~~~l~~------~~~~f   82 (231)
T d1vl5a_          11 AALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGH-QQVEYVQGDAEQMPF------TDERF   82 (231)
T ss_dssp             HTCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCC-CCCS------CTTCE
T ss_pred             cCCCCcCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHHhhhhhccccccc-ccccccccccccccc------ccccc
Confidence            3467899999999999999988887765 899999999999999998866542 358999999988776      57899


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      |+|+|..++||+    ++...+++++.++|||||++++..+
T Consensus        83 D~v~~~~~l~~~----~d~~~~l~~~~r~LkpgG~l~i~~~  119 (231)
T d1vl5a_          83 HIVTCRIAAHHF----PNPASFVSEAYRVLKKGGQLLLVDN  119 (231)
T ss_dssp             EEEEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cccccccccccc----CCHHHHHHHHHHhcCCCcEEEEEeC
Confidence            999999999984    2367899999999999999998743

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.86  E-value=3.3e-21  Score=154.23  Aligned_cols=119  Identities=23%  Similarity=0.291  Sum_probs=102.3

Q ss_pred             HHHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhccc
Q 025775           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (248)
Q Consensus        23 ~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  102 (248)
                      .++.++++++.+|||||||+|.++..++..+. +++|+|+|+.|++.|+++....+  .++.++++|+.+.++      +
T Consensus        29 ~~~~~~l~~~~~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i~~ak~~~~~~~--~~~~~~~~d~~~l~~------~   99 (226)
T d1ve3a1          29 PLLMKYMKKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKLSF------E   99 (226)
T ss_dssp             HHHHHSCCSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSCCS------C
T ss_pred             HHHHHhcCCCCEEEEECCCcchhhhhHhhhhc-ccccccccccchhhhhhhhcccc--ccccccccccccccc------c
Confidence            35667888999999999999999999987765 89999999999999999887654  347788999988766      5


Q ss_pred             CCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHH
Q 025775          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (248)
Q Consensus       103 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~  152 (248)
                      +++||+|+|..+++|  .+..++..+++++.++|||||.+++.+++...+
T Consensus       100 ~~~fD~I~~~~~l~~--~~~~d~~~~l~~i~~~LkpgG~lii~~~~~~~~  147 (226)
T d1ve3a1         100 DKTFDYVIFIDSIVH--FEPLELNQVFKEVRRVLKPSGKFIMYFTDLREL  147 (226)
T ss_dssp             TTCEEEEEEESCGGG--CCHHHHHHHHHHHHHHEEEEEEEEEEEECHHHH
T ss_pred             CcCceEEEEecchhh--CChhHHHHHHHHHHHHcCcCcEEEEEEcCchhh
Confidence            789999999999998  456778899999999999999999998876544

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.86  E-value=6.2e-21  Score=154.15  Aligned_cols=110  Identities=20%  Similarity=0.274  Sum_probs=93.4

Q ss_pred             HHHHh-cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhccc
Q 025775           24 LIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (248)
Q Consensus        24 li~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  102 (248)
                      |++.. ++|+.+|||||||+|..+..++... .+|+|+|+|+.|++.|+++....+. .++.++++|+.+.++      +
T Consensus         8 l~~~~~~~~~~rILDiGcGtG~~~~~la~~~-~~v~gvD~S~~~l~~A~~~~~~~~~-~~~~~~~~d~~~~~~------~   79 (234)
T d1xxla_           8 MIKTAECRAEHRVLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEKGV-ENVRFQQGTAESLPF------P   79 (234)
T ss_dssp             HHHHHTCCTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHHTC-CSEEEEECBTTBCCS------C
T ss_pred             HHHHhCCCCCCEEEEeCCcCcHHHHHHHHhC-CeEEEEeCChhhhhhhhhhhccccc-ccccccccccccccc------c
Confidence            44444 6799999999999999999998776 4999999999999999998776542 248999999988776      5


Q ss_pred             CCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       103 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +++||+|+|..++|++    ++...+++++.++|||||+++++
T Consensus        80 ~~~fD~v~~~~~l~~~----~d~~~~l~~~~r~LkpgG~~~~~  118 (234)
T d1xxla_          80 DDSFDIITCRYAAHHF----SDVRKAVREVARVLKQDGRFLLV  118 (234)
T ss_dssp             TTCEEEEEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccccceeeeeceeecc----cCHHHHHHHHHHeeCCCcEEEEE
Confidence            7899999999999983    23678999999999999999886

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.86  E-value=5.9e-21  Score=153.44  Aligned_cols=128  Identities=19%  Similarity=0.139  Sum_probs=101.9

Q ss_pred             ccchhhhhHhHHHHHHHHHhcCCCCeEEEEcCCCCccHhHHHHc---CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEE
Q 025775            9 SELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQRKNFIAEF   85 (248)
Q Consensus         9 ~~~~~~~~~~~~~~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~---~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~   85 (248)
                      +-.|.++.-...-..++..+.+|+.+|||||||+|..+..++..   +..+|+|+|+|+.|++.|+++....+....+.+
T Consensus        17 ~~iP~Y~~~~~~i~~~~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~   96 (225)
T d1im8a_          17 RSVPGYSNIITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEI   96 (225)
T ss_dssp             HHSTTHHHHHHHHHHHHHHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEE
T ss_pred             hcCCCHHHHHHHHHHHHHHhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhh
Confidence            34454443333344566777889999999999999998888763   345999999999999999999877665566788


Q ss_pred             EEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775           86 FEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus        86 ~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      ..+|..+.+        ...+|+|+|..++|+  .+.++..+++++++++|||||.+++..
T Consensus        97 ~~~d~~~~~--------~~~~d~i~~~~~l~~--~~~~d~~~~l~~i~~~LkpgG~li~~~  147 (225)
T d1im8a_          97 LCNDIRHVE--------IKNASMVILNFTLQF--LPPEDRIALLTKIYEGLNPNGVLVLSE  147 (225)
T ss_dssp             ECSCTTTCC--------CCSEEEEEEESCGGG--SCGGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccchhhccc--------cccceeeEEeeeccc--cChhhHHHHHHHHHHhCCCCceeeccc
Confidence            888875433        467999999999998  567778899999999999999999873

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.1e-20  Score=152.69  Aligned_cols=144  Identities=17%  Similarity=0.117  Sum_probs=105.4

Q ss_pred             CCCCCcccchhhhhHhHHHHHHHHHhcC---CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCC
Q 025775            3 VLPIPRSELTHHRLYEFAKTALIKIYSH---PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK   79 (248)
Q Consensus         3 ~~~~~r~~~~~~~~~~~~~~~li~~~~~---~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~   79 (248)
                      +|.+.....+.....+|+.+.+.+.+..   ++.+|||||||+|.++..++..+..+|+|+|+|+.|++.|++++...+.
T Consensus        20 ~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~   99 (257)
T d2a14a1          20 YYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPG   99 (257)
T ss_dssp             HCCCCCSCCHHHHHHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTT
T ss_pred             HhCcCccccHHHHHHHHHHHHHHHHhcccCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccc
Confidence            3555555556666678888777776543   6789999999999988777766666899999999999999988765331


Q ss_pred             Cce-----------------------------EEEEEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHH
Q 025775           80 NFI-----------------------------AEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQ  130 (248)
Q Consensus        80 ~~~-----------------------------~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~  130 (248)
                      ...                             ......++......  .+...++||+|++.+++|++....++...+++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~  177 (257)
T d2a14a1         100 AYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPL--APAVLPLADCVLTLLAMECACCSLDAYRAALC  177 (257)
T ss_dssp             CCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTT--TTCCCCCEEEEEEESCHHHHCSSHHHHHHHHH
T ss_pred             cchhhhHHHHHHHhccccchHHHHHHHHhhhhhccccccccccccc--ccccCCcccEEeehhhHHHhcccHHHHHHHHH
Confidence            100                             11222232222211  11146789999999999998888889999999


Q ss_pred             HHhccccCCcEEEEEecC
Q 025775          131 NVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       131 ~~~~~LkpgG~~i~~~~~  148 (248)
                      ++.++|||||++++..+.
T Consensus       178 ~i~~~LkpGG~li~~~~~  195 (257)
T d2a14a1         178 NLASLLKPGGHLVTTVTL  195 (257)
T ss_dssp             HHHTTEEEEEEEEEEEES
T ss_pred             HHHhccCCCcEEEEEEec
Confidence            999999999999987543

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.84  E-value=3.1e-21  Score=155.16  Aligned_cols=110  Identities=11%  Similarity=0.165  Sum_probs=91.3

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      ++.+|||||||+|..+..++..+. +|+|+|+|+++++.|+++...     .+.++++|+.+..+       +++||+|+
T Consensus        20 ~~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i~~a~~~~~~-----~~~~~~~~~~~~~~-------~~~fD~I~   86 (225)
T d2p7ia1          20 RPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD-----GITYIHSRFEDAQL-------PRRYDNIV   86 (225)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGCCC-------SSCEEEEE
T ss_pred             CCCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHhhhhhccccc-----cccccccccccccc-------cccccccc
Confidence            466899999999999998877665 899999999999999877542     38899998755443       67899999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHh-ccccCCcEEEEEecChhHHHHHHH
Q 025775          111 CFQHLQMCFETEERARRLLQNVS-SLLKPGGYFLGITPDSSTIWAKYQ  157 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~~~-~~LkpgG~~i~~~~~~~~~~~~~~  157 (248)
                      |..++||+    ++...++.++. ++|+|||.+++++||...+.+.+.
T Consensus        87 ~~~vleh~----~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~  130 (225)
T d2p7ia1          87 LTHVLEHI----DDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIA  130 (225)
T ss_dssp             EESCGGGC----SSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHH
T ss_pred             ccceeEec----CCHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHH
Confidence            99999984    34667888887 789999999999999887766654

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.84  E-value=2.5e-20  Score=154.72  Aligned_cols=109  Identities=12%  Similarity=0.025  Sum_probs=94.2

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      ++++.+|||||||+|..+..++.....+|+|+|+|+.|++.|+++....+...++.+.++|+.+.++      ++++||+
T Consensus        65 l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~------~~~sfD~  138 (282)
T d2o57a1          65 LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC------EDNSYDF  138 (282)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS------CTTCEEE
T ss_pred             CCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccccccccccc------cccccch
Confidence            5689999999999999999888763348999999999999999998877665679999999988776      5789999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      |+|..+++|+    ++...+++++.++|||||.|+++.+
T Consensus       139 V~~~~~l~h~----~d~~~~l~~~~~~LkpgG~l~~~~~  173 (282)
T d2o57a1         139 IWSQDAFLHS----PDKLKVFQECARVLKPRGVMAITDP  173 (282)
T ss_dssp             EEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hhccchhhhc----cCHHHHHHHHHHhcCCCcEEEEEEe
Confidence            9999999884    2367899999999999999998744

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.83  E-value=1.6e-20  Score=152.79  Aligned_cols=109  Identities=28%  Similarity=0.396  Sum_probs=92.6

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      ..++.+|||||||+|..+..+++.+. +|+|+|+|+.|++.|+++....+  .++.+.++|+.+.++       +++||+
T Consensus        39 ~~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a~~~~~~~~--~~i~~~~~d~~~l~~-------~~~fD~  108 (251)
T d1wzna1          39 KREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERN--LKIEFLQGDVLEIAF-------KNEFDA  108 (251)
T ss_dssp             SSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCCEEEESCGGGCCC-------CSCEEE
T ss_pred             CCCCCEEEEeCCCCCccchhhcccce-EEEEEeecccccccccccccccc--ccchheehhhhhccc-------ccccch
Confidence            44677999999999999999988776 89999999999999999987654  358999999977654       468999


Q ss_pred             EEecc-chhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          109 VCCFQ-HLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       109 V~~~~-~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      |+|.+ ++++  .+.++...+++++.++|||||++++.+++.
T Consensus       109 I~~~~~~~~~--~~~~~~~~~L~~~~~~LkpgG~lii~~~~~  148 (251)
T d1wzna1         109 VTMFFSTIMY--FDEEDLRKLFSKVAEALKPGGVFITDFPCW  148 (251)
T ss_dssp             EEECSSGGGG--SCHHHHHHHHHHHHHHEEEEEEEEEEEEC-
T ss_pred             Hhhhhhhhhc--CChHHHHHHHHHHHHHcCCCcEEEEEeccc
Confidence            99976 4444  467788999999999999999999998875

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.5e-20  Score=150.77  Aligned_cols=107  Identities=13%  Similarity=0.115  Sum_probs=91.2

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      ++.+|||||||+|..+..++.....+|+|+|+|+.||+.|+++....+. ..+.|+++|+.+.++      .+++||+|+
T Consensus        60 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~-~~~~f~~~d~~~~~~------~~~~fD~I~  132 (222)
T d2ex4a1          60 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK-RVRNYFCCGLQDFTP------EPDSYDVIW  132 (222)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG-GEEEEEECCGGGCCC------CSSCEEEEE
T ss_pred             CCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccc-ccccccccccccccc------ccccccccc
Confidence            5679999999999998887766666999999999999999998765432 347899999877554      468999999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      |..++|+  .+.++..+++++++++|+|||.+++..
T Consensus       133 ~~~~l~h--~~~~~~~~~l~~i~~~Lk~~G~~~i~~  166 (222)
T d2ex4a1         133 IQWVIGH--LTDQHLAEFLRRCKGSLRPNGIIVIKD  166 (222)
T ss_dssp             EESCGGG--SCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccc--chhhhhhhHHHHHHHhcCCcceEEEEE
Confidence            9999998  556778899999999999999999873

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.81  E-value=1.1e-19  Score=148.72  Aligned_cols=105  Identities=17%  Similarity=0.150  Sum_probs=90.3

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      ++.+|||+|||+|..+..++......|+|+|+|+.|++.|+++....+   .+.|+++|+.+.++      .+++||+|+
T Consensus        93 ~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~---~~~~~~~d~~~~~~------~~~~fD~I~  163 (254)
T d1xtpa_          93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMP---VGKFILASMETATL------PPNTYDLIV  163 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSS---EEEEEESCGGGCCC------CSSCEEEEE
T ss_pred             CCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccc---cceeEEcccccccc------CCCccceEE
Confidence            677999999999999988776655689999999999999998876543   37899999876555      468999999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      |+.++||  .+.+++.++++++++.|+|||++++..
T Consensus       164 ~~~vl~h--l~d~d~~~~l~~~~~~LkpgG~iii~e  197 (254)
T d1xtpa_         164 IQWTAIY--LTDADFVKFFKHCQQALTPNGYIFFKE  197 (254)
T ss_dssp             EESCGGG--SCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eeccccc--cchhhhHHHHHHHHHhcCCCcEEEEEe
Confidence            9999998  567788899999999999999999863

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.81  E-value=5.3e-20  Score=148.92  Aligned_cols=115  Identities=17%  Similarity=0.177  Sum_probs=93.4

Q ss_pred             HHHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhccc
Q 025775           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (248)
Q Consensus        23 ~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  102 (248)
                      .++..+.+++.+|||+|||+|..+..++..+. +|+|+|+|+.|++.|+++..       ..++++|+.+.++      +
T Consensus        34 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~-------~~~~~~~~~~l~~------~   99 (246)
T d2avna1          34 SFLEEYLKNPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGV-------KNVVEAKAEDLPF------P   99 (246)
T ss_dssp             HHHHHHCCSCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTC-------SCEEECCTTSCCS------C
T ss_pred             HHHHHhcCCCCEEEEECCCCchhcccccccce-EEEEeecccccccccccccc-------ccccccccccccc------c
Confidence            45566777889999999999999999987765 89999999999999987632       2367888877665      4


Q ss_pred             CCceeEEEecc-chhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHH
Q 025775          103 ANQADLVCCFQ-HLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAK  155 (248)
Q Consensus       103 ~~~fD~V~~~~-~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~  155 (248)
                      +++||+|+|.+ ++|+. .   +...+++++.++|||||++++++|+...+...
T Consensus       100 ~~~fD~ii~~~~~~~~~-~---d~~~~l~~i~r~Lk~gG~~ii~~~~~~~~~~~  149 (246)
T d2avna1         100 SGAFEAVLALGDVLSYV-E---NKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQ  149 (246)
T ss_dssp             TTCEEEEEECSSHHHHC-S---CHHHHHHHHHHHEEEEEEEEEEEEBHHHHHHH
T ss_pred             cccccceeeecchhhhh-h---hHHHHHHHHHhhcCcCcEEEEEECCHHHHHHH
Confidence            78999999864 67763 2   35678999999999999999999987665444

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.81  E-value=2.6e-19  Score=148.22  Aligned_cols=173  Identities=14%  Similarity=0.160  Sum_probs=121.6

Q ss_pred             HHHHh-cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhccc
Q 025775           24 LIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (248)
Q Consensus        24 li~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  102 (248)
                      +++.. ++||.+|||||||+|+.+..++.....+|+|+|+|+++++.|+++....+....+.+...|...         .
T Consensus        44 ~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~---------~  114 (280)
T d2fk8a1          44 NLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED---------F  114 (280)
T ss_dssp             HHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG---------C
T ss_pred             HHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhh---------h
Confidence            44444 6699999999999999998887663349999999999999999999887766677787777532         3


Q ss_pred             CCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec---ChhHHHHHHHHhHhhhhCCCCCCCCCCCCCcc
Q 025775          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP---DSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCI  179 (248)
Q Consensus       103 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  179 (248)
                      +++||.|++..++++  ...+....+++++.++|||||.+++...   +......+.....  .                
T Consensus       115 ~~~fD~i~si~~~eh--~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~--~----------------  174 (280)
T d2fk8a1         115 AEPVDRIVSIEAFEH--FGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLS--F----------------  174 (280)
T ss_dssp             CCCCSEEEEESCGGG--TCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHH--H----------------
T ss_pred             ccchhhhhHhhHHHH--hhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccc--c----------------
Confidence            678999999998887  3456678999999999999999998632   2111110000000  0                


Q ss_pred             cCceeEEEecccCCCCCcceeeeEEEEccCccCCCcceechHHHHHHHHHcCcEEEEecCchHHH
Q 025775          180 RSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFY  244 (248)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~G~~~v~~~~f~~~~  244 (248)
                               +.  .....|-.+|.|        +..++++.+.+.++++++||+++...+|..-|
T Consensus       175 ---------~~--~~~~dfI~kyif--------Pgg~lPS~~~l~~~~e~aGf~v~~~~~~~~hY  220 (280)
T d2fk8a1         175 ---------ET--ARFIKFIVTEIF--------PGGRLPSTEMMVEHGEKAGFTVPEPLSLRPHY  220 (280)
T ss_dssp             ---------HH--HHHHHHHHHHTS--------TTCCCCCHHHHHHHHHHTTCBCCCCEECHHHH
T ss_pred             ---------cc--ccccchhhhhcc--------CCCcccchHhhhhhHHhhccccceeeecccCH
Confidence                     00  000011222222        12257788999999999999999888876554

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.81  E-value=1.3e-19  Score=143.62  Aligned_cols=103  Identities=17%  Similarity=0.191  Sum_probs=85.9

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      .|+.+|||||||+|.++..+     .+++|+|+|+.|++.|+++    +    +.++++|+.+.++      .+++||+|
T Consensus        35 ~~~~~vLDiGcG~G~~~~~~-----~~~~giD~s~~~~~~a~~~----~----~~~~~~d~~~l~~------~~~~fD~I   95 (208)
T d1vlma_          35 LPEGRGVEIGVGTGRFAVPL-----KIKIGVEPSERMAEIARKR----G----VFVLKGTAENLPL------KDESFDFA   95 (208)
T ss_dssp             CCSSCEEEETCTTSTTHHHH-----TCCEEEESCHHHHHHHHHT----T----CEEEECBTTBCCS------CTTCEEEE
T ss_pred             CCCCeEEEECCCCccccccc-----ceEEEEeCChhhccccccc----c----ccccccccccccc------cccccccc
Confidence            35678999999999988766     2578999999999998864    2    7899999987665      57899999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHH
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAK  155 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~  155 (248)
                      +|..++|++    ++...+++++.++|+|||.+++..++.+.....
T Consensus        96 ~~~~~l~h~----~d~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~  137 (208)
T d1vlma_          96 LMVTTICFV----DDPERALKEAYRILKKGGYLIVGIVDRESFLGR  137 (208)
T ss_dssp             EEESCGGGS----SCHHHHHHHHHHHEEEEEEEEEEEECSSSHHHH
T ss_pred             ccccccccc----cccccchhhhhhcCCCCceEEEEecCCcchhHH
Confidence            999999984    236789999999999999999999988655433

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.81  E-value=6.8e-20  Score=143.37  Aligned_cols=124  Identities=13%  Similarity=0.053  Sum_probs=98.9

Q ss_pred             hHhHHHHHHHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCC-----------CceEE
Q 025775           16 LYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK-----------NFIAE   84 (248)
Q Consensus        16 ~~~~~~~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~-----------~~~~~   84 (248)
                      ++.+++..+-..-++|+.+|||+|||+|.++..++..+. +|+|+|+|+.||+.|+++......           .....
T Consensus         5 ~~~~~~~~~~~l~~~~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~   83 (201)
T d1pjza_           5 VNKDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIE   83 (201)
T ss_dssp             STHHHHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSE
T ss_pred             HHHHHHHHHHHcCCCCCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccc
Confidence            344455555555577999999999999999999998887 999999999999999998754321           12357


Q ss_pred             EEEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775           85 FFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus        85 ~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      ++++|..+.+..     ....||+|++..++|+  .+.+....+++++.++|||||.+++...
T Consensus        84 ~~~~d~~~l~~~-----~~~~~D~i~~~~~l~~--l~~~~~~~~~~~i~~~LkpgG~l~l~~~  139 (201)
T d1pjza_          84 IWCGDFFALTAR-----DIGHCAAFYDRAAMIA--LPADMRERYVQHLEALMPQACSGLLITL  139 (201)
T ss_dssp             EEEECCSSSTHH-----HHHSEEEEEEESCGGG--SCHHHHHHHHHHHHHHSCSEEEEEEEEE
T ss_pred             eecccccccccc-----cccceeEEEEEeeeEe--cchhhhHHHHHHHHHhcCCCcEEEEEEc
Confidence            888888775543     2468999999999987  5677888999999999999999887643

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=2e-19  Score=146.19  Aligned_cols=109  Identities=20%  Similarity=0.219  Sum_probs=93.5

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      +.|+.+|||||||+|..+..+++....+++|+|+|+.|++.|+++....+...+++|.++|+.+..       .+++||+
T Consensus        31 l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~-------~~~~fD~  103 (245)
T d1nkva_          31 MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV-------ANEKCDV  103 (245)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC-------CSSCEEE
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhcc-------ccCceeE
Confidence            568999999999999999888776445999999999999999999887776667999999997642       3689999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      |+|..+++++.    +...++++++++|||||.+++..+.
T Consensus       104 v~~~~~~~~~~----d~~~~l~~~~r~LkPGG~l~i~~~~  139 (245)
T d1nkva_         104 AACVGATWIAG----GFAGAEELLAQSLKPGGIMLIGEPY  139 (245)
T ss_dssp             EEEESCGGGTS----SSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred             EEEEehhhccC----CHHHHHHHHHHHcCcCcEEEEEecc
Confidence            99999998843    3678999999999999999998543

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=9.5e-19  Score=143.73  Aligned_cols=132  Identities=16%  Similarity=0.117  Sum_probs=96.6

Q ss_pred             hHhHHHHHHHHHhc---CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCc-----------
Q 025775           16 LYEFAKTALIKIYS---HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNF-----------   81 (248)
Q Consensus        16 ~~~~~~~~li~~~~---~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~-----------   81 (248)
                      +.+|....+-+.+.   .++.+|||+|||+|......+.....+|+|+|+|+.|++.++++........           
T Consensus        36 ~~~~~~~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~  115 (263)
T d2g72a1          36 VGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACL  115 (263)
T ss_dssp             HHHHHHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHH
T ss_pred             hhhhHHHHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhh
Confidence            44565555555443   2678999999999987665555556689999999999999987654321100           


Q ss_pred             ------------------eEEEEEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEE
Q 025775           82 ------------------IAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (248)
Q Consensus        82 ------------------~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i  143 (248)
                                        -.....+|+............+++||+|++.+++|++..+.++...+++++.++|||||+|+
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li  195 (263)
T d2g72a1         116 IEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLL  195 (263)
T ss_dssp             HHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             hccccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEE
Confidence                              12345677765443222222356899999999999988888899999999999999999999


Q ss_pred             EEec
Q 025775          144 GITP  147 (248)
Q Consensus       144 ~~~~  147 (248)
                      +..+
T Consensus       196 ~~~~  199 (263)
T d2g72a1         196 LIGA  199 (263)
T ss_dssp             EEEE
T ss_pred             Eecc
Confidence            8743

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.78  E-value=4.5e-18  Score=141.20  Aligned_cols=173  Identities=15%  Similarity=0.103  Sum_probs=121.2

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      +++|.+|||||||+|+.+..++.....+++|+++|+++++.|+++....+...++.+...|..   .      .+++||.
T Consensus        59 l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~---~------~~~~fD~  129 (291)
T d1kpia_          59 LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE---E------FDEPVDR  129 (291)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGG---G------CCCCCSE
T ss_pred             CCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhccc---c------cccccce
Confidence            669999999999999999888766334999999999999999999988777667888888752   2      4689999


Q ss_pred             EEeccchhhhcCC-----HHHHHHHHHHHhccccCCcEEEEEecCh-hHHHHHHHHhHhhhhCCCCCCCCCCCCCcccCc
Q 025775          109 VCCFQHLQMCFET-----EERARRLLQNVSSLLKPGGYFLGITPDS-STIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSE  182 (248)
Q Consensus       109 V~~~~~l~~~~~~-----~~~~~~~l~~~~~~LkpgG~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  182 (248)
                      |+|..++.++-..     .+..+.+++++.++|||||.+++.+... +.... ...        +. ..|         .
T Consensus       130 i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~-~~~--------~~-~~p---------~  190 (291)
T d1kpia_         130 IVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEA-QEL--------GL-TSP---------M  190 (291)
T ss_dssp             EEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHH-HHH--------TC-CCC---------H
T ss_pred             EeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchh-hhc--------cC-CCc---------h
Confidence            9999988764321     2567899999999999999999874321 11110 000        00 000         0


Q ss_pred             eeEEEecccCCCCCcceeeeEEEEccCccCCCcceechHHHHHHHHHcCcEEEEecCchHHHh
Q 025775          183 SYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYD  245 (248)
Q Consensus       183 ~~~~~~~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~G~~~v~~~~f~~~~~  245 (248)
                      .+        .....|-.+|.|        +..++.+...+...++++||+++...++..-|.
T Consensus       191 ~~--------~~~~~fi~kyiF--------pgg~lps~~~~~~~~e~~gl~v~~~~~~~~hYa  237 (291)
T d1kpia_         191 SL--------LRFIKFILTEIF--------PGGRLPRISQVDYYSSNAGWKVERYHRIGANYV  237 (291)
T ss_dssp             HH--------HHHHHHHHHHTC--------TTCCCCCHHHHHHHHHHHTCEEEEEEECGGGHH
T ss_pred             hh--------cccchHHHHHhc--------CCCCCCCHHHHHhhhcccccccceeeeccccHH
Confidence            00        000012223333        123577889999999999999998888877664

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.77  E-value=8e-18  Score=139.30  Aligned_cols=169  Identities=18%  Similarity=0.213  Sum_probs=120.0

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      +.||.+|||||||+|+.+..++.....+|+|+++|+..++.|+++....+...++.+..+|...         .+++||.
T Consensus        60 l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~---------~~~~fD~  130 (285)
T d1kpga_          60 LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ---------FDEPVDR  130 (285)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG---------CCCCCSE
T ss_pred             CCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhc---------ccccccc
Confidence            5699999999999999998887764359999999999999999998887777789999998633         2578999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh---hHHHHHHHHhHhhhhCCCCCCCCCCCCCcccCceeE
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS---STIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYV  185 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  185 (248)
                      |++..++.++  .......+++++.++|+|||.+++.+...   .....+           +       .+..       
T Consensus       131 i~si~~~eh~--~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~-----------~-------~~~~-------  183 (285)
T d1kpga_         131 IVSIGAFEHF--GHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHER-----------G-------LPMS-------  183 (285)
T ss_dssp             EEEESCGGGT--CTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTT-----------T-------CSCH-------
T ss_pred             eeeehhhhhc--CchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccc-----------c-------CCcc-------
Confidence            9999888773  23446789999999999999999864321   111000           0       0000       


Q ss_pred             EEecccCCCCCcceeeeEEEEccCccCCCcceechHHHHHHHHHcCcEEEEecCchHHHh
Q 025775          186 ITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYD  245 (248)
Q Consensus       186 ~~~~~~~~~~~~~g~~y~~~l~~~~~~~~e~lv~~~~l~~~~~~~G~~~v~~~~f~~~~~  245 (248)
                        +..  .....|-.+|.|        +...+.+...+.++++++||+++...++..-|.
T Consensus       184 --~~~--~~~~~fi~kyiF--------pgg~lPsl~~~~~~~e~agf~v~~~~~~~~hYa  231 (285)
T d1kpga_         184 --FTF--ARFLKFIVTEIF--------PGGRLPSIPMVQECASANGFTVTRVQSLQPHYA  231 (285)
T ss_dssp             --HHH--HHHHHHHHHHTS--------TTCCCCCHHHHHHHHHTTTCEEEEEEECHHHHH
T ss_pred             --hhh--hchhhHHHHHhc--------cCCCCCChhhHHHHHHHhchhhcccccchhhHH
Confidence              000  000012222322        112466888999999999999999988876653

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.76  E-value=3.2e-18  Score=134.64  Aligned_cols=107  Identities=16%  Similarity=0.124  Sum_probs=90.8

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      ++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.++++....+. ..+.+...|+....+       +++||+|+
T Consensus        30 ~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~a~~~~~~~~~-~~~~~~~~d~~~~~~-------~~~fD~I~  100 (198)
T d2i6ga1          30 APGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASMANLERIKAAEGL-DNLQTDLVDLNTLTF-------DGEYDFIL  100 (198)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-TTEEEEECCTTTCCC-------CCCEEEEE
T ss_pred             CCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHHHHHHHHhhhccc-cchhhhheecccccc-------cccccEEE
Confidence            345999999999999999988877 899999999999999988776543 237889999877554       67899999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      |..++|+  .+.+....+++++.++|+|||++++....
T Consensus       101 ~~~~~~~--~~~~~~~~~l~~~~~~L~pgG~~~~~~~~  136 (198)
T d2i6ga1         101 STVVMMF--LEAQTIPGLIANMQRCTKPGGYNLIVAAM  136 (198)
T ss_dssp             EESCGGG--SCTTHHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             Eeeeeec--CCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            9999998  45667889999999999999999887443

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=3.4e-18  Score=140.72  Aligned_cols=109  Identities=21%  Similarity=0.336  Sum_probs=89.7

Q ss_pred             HHHHHhcCCCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc
Q 025775           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE  101 (248)
Q Consensus        23 ~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  101 (248)
                      .+......++.+|||+|||+|..+..++... ...++|+|+|+.|++.|+++..      ++.+.++|+.+.++      
T Consensus        76 ~l~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~------~~~~~~~d~~~l~~------  143 (268)
T d1p91a_          76 QLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP------QVTFCVASSHRLPF------  143 (268)
T ss_dssp             HHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT------TSEEEECCTTSCSB------
T ss_pred             HHHHhcCCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccc------cccceeeehhhccC------
Confidence            3333444578899999999999999998774 3489999999999999987643      27899999988877      


Q ss_pred             cCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHH
Q 025775          102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA  154 (248)
Q Consensus       102 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~  154 (248)
                      .+++||+|++.+++++           ++++.++|||||.+++.+|+.+.+..
T Consensus       144 ~~~sfD~v~~~~~~~~-----------~~e~~rvLkpgG~l~~~~p~~~~l~e  185 (268)
T d1p91a_         144 SDTSMDAIIRIYAPCK-----------AEELARVVKPGGWVITATPGPRHLME  185 (268)
T ss_dssp             CTTCEEEEEEESCCCC-----------HHHHHHHEEEEEEEEEEEECTTTTHH
T ss_pred             CCCCEEEEeecCCHHH-----------HHHHHHHhCCCcEEEEEeeCCcchHH
Confidence            5789999999887765           45789999999999999999866544

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=1.4e-17  Score=138.51  Aligned_cols=120  Identities=21%  Similarity=0.236  Sum_probs=89.4

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCC---ceEEEEEcCCCCCchhhhhcccCCcee
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN---FIAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      ++.+|||+|||+|..+..++..+. +|+|+|+|+.||+.|+++....+..   ....+..++....+  ...+ ...+||
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~fd  131 (292)
T d1xvaa_          56 GCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD--KDVP-AGDGFD  131 (292)
T ss_dssp             TCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHH--HHSC-CTTCEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccc--cccC-CCCCce
Confidence            567999999999999999988876 8999999999999999887654321   11334455543211  1111 356899


Q ss_pred             EEEecc-chhhhcC---CHHHHHHHHHHHhccccCCcEEEEEecChhHHHH
Q 025775          108 LVCCFQ-HLQMCFE---TEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA  154 (248)
Q Consensus       108 ~V~~~~-~l~~~~~---~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~  154 (248)
                      +|+|.+ +++|+..   ..++...+++++.++|||||+|++++++.+.+..
T Consensus       132 ~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~  182 (292)
T d1xvaa_         132 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILS  182 (292)
T ss_dssp             EEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHH
T ss_pred             EEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecCHHHHhh
Confidence            998865 6666432   2467889999999999999999999998876643

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.2e-17  Score=138.02  Aligned_cols=141  Identities=16%  Similarity=0.161  Sum_probs=96.4

Q ss_pred             hhhhhHhHHHHHHHHHhc-----CCCCeEEEEcCCCCccHhHHHHc------C-CCeEEEEeCChHHHHHHHHHHHhcCC
Q 025775           12 THHRLYEFAKTALIKIYS-----HPYVTVCDLYCGAGVDVDKWETA------L-IANYIGIDVATSGIGEARDTWENQRK   79 (248)
Q Consensus        12 ~~~~~~~~~~~~li~~~~-----~~~~~VLDlGcG~G~~~~~l~~~------~-~~~v~giDis~~~l~~a~~~~~~~~~   79 (248)
                      .+..+.+|+...+-....     ++..+|||||||+|..+..++..      + ...++|+|+|+.|++.|+++......
T Consensus        16 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~   95 (280)
T d1jqea_          16 EHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISN   95 (280)
T ss_dssp             HHHHHHHHHHHTHHHHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccc
Confidence            334456777766544332     24458999999999987666542      1 22689999999999999998865432


Q ss_pred             CceE--EEEEcCCCCCchhhh--hcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHH
Q 025775           80 NFIA--EFFEADPCAENFETQ--MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAK  155 (248)
Q Consensus        80 ~~~~--~~~~~d~~~~~~~~~--~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~  155 (248)
                      ...+  .+.+.++  ..+...  ....+++||+|+|..++||+    ++...+++++.++|+|||.++++.++....+.+
T Consensus        96 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~fD~I~~~~~l~~~----~d~~~~l~~l~~~LkpgG~l~i~~~~~~~~~~~  169 (280)
T d1jqea_          96 LENVKFAWHKETS--SEYQSRMLEKKELQKWDFIHMIQMLYYV----KDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDK  169 (280)
T ss_dssp             CTTEEEEEECSCH--HHHHHHHTTSSSCCCEEEEEEESCGGGC----SCHHHHHHHHHHTEEEEEEEEEEEECTTSHHHH
T ss_pred             cccccccchhhhh--hhhcchhcccCCCCceeEEEEccceecC----CCHHHHHHHHHhhCCCCCEEEEEEecCcchHHH
Confidence            2223  3334332  111110  11146899999999999984    236789999999999999999998877666655


Q ss_pred             HHH
Q 025775          156 YQK  158 (248)
Q Consensus       156 ~~~  158 (248)
                      +.+
T Consensus       170 l~~  172 (280)
T d1jqea_         170 LWK  172 (280)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.73  E-value=9.2e-18  Score=139.03  Aligned_cols=115  Identities=23%  Similarity=0.322  Sum_probs=93.1

Q ss_pred             HHHHHHh--cCCCCeEEEEcCCCCccHhHHHHc-C-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh
Q 025775           22 TALIKIY--SHPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET   97 (248)
Q Consensus        22 ~~li~~~--~~~~~~VLDlGcG~G~~~~~l~~~-~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   97 (248)
                      +.+++..  ..++.+|||+|||+|..+..++.. + ..+|+|+|+|+.+++.|+++....+  .++.|.++|+.+.++  
T Consensus        16 ~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~--~~~~f~~~d~~~~~~--   91 (281)
T d2gh1a1          16 SFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP--YDSEFLEGDATEIEL--   91 (281)
T ss_dssp             HHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSS--SEEEEEESCTTTCCC--
T ss_pred             HHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccc--ccccccccccccccc--
Confidence            3444544  346789999999999988888764 2 3489999999999999999887654  368999999977654  


Q ss_pred             hhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775           98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus        98 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                           +++||+|+|..++|++-    +...+++++.++|||||.+++..|+.
T Consensus        92 -----~~~fD~v~~~~~l~~~~----d~~~~l~~~~~~LkpgG~lii~~~~~  134 (281)
T d2gh1a1          92 -----NDKYDIAICHAFLLHMT----TPETMLQKMIHSVKKGGKIICFEPHW  134 (281)
T ss_dssp             -----SSCEEEEEEESCGGGCS----SHHHHHHHHHHTEEEEEEEEEEECCH
T ss_pred             -----cCCceEEEEehhhhcCC----CHHHHHHHHHHHcCcCcEEEEEECCc
Confidence                 46799999999999832    35679999999999999999988764

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.4e-17  Score=133.90  Aligned_cols=112  Identities=13%  Similarity=0.061  Sum_probs=91.7

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcC----------------CCceEEEEEcCCCC
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR----------------KNFIAEFFEADPCA   92 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~----------------~~~~~~~~~~d~~~   92 (248)
                      .+++.+|||+|||+|.++..++..+. +|+|+|+|+.+|+.|+++.....                ...++.++++|+..
T Consensus        43 ~~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  121 (229)
T d2bzga1          43 GKSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFD  121 (229)
T ss_dssp             TCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGG
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhh
Confidence            45788999999999999999999888 99999999999999998764321                12357889999865


Q ss_pred             CchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775           93 ENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus        93 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      .+..     ..+.||+|+...++|+  .+.+.....++++.++|||||.+++.+.+
T Consensus       122 l~~~-----~~~~fd~i~~~~~l~~--~~~~~r~~~~~~~~~~LkpgG~~~l~~~~  170 (229)
T d2bzga1         122 LPRT-----NIGKFDMIWDRGALVA--INPGDRKCYADTMFSLLGKKFQYLLCVLS  170 (229)
T ss_dssp             GGGS-----CCCCEEEEEESSSTTT--SCGGGHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             cccc-----ccCceeEEEEEEEEEe--ccchhhHHHHHHHHhhcCCcceEEEEEcc
Confidence            4331     4678999999999987  45677889999999999999998877443

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.72  E-value=2.6e-16  Score=128.22  Aligned_cols=105  Identities=18%  Similarity=0.131  Sum_probs=89.4

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      .+..+|||||||+|..+..+++.. ..+++++|+ +.+++.++++....+...++.++.+|+.+..        +.+||+
T Consensus        79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~--------~~~~D~  149 (253)
T d1tw3a2          79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL--------PRKADA  149 (253)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC--------SSCEEE
T ss_pred             ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhc--------ccchhh
Confidence            356799999999999999998773 458999998 6799999998887766667999999986522        457999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      |++..++|+  .+.++...++++++++|||||.+++.
T Consensus       150 v~~~~vlh~--~~d~~~~~~L~~~~~~LkPGG~l~i~  184 (253)
T d1tw3a2         150 IILSFVLLN--WPDHDAVRILTRCAEALEPGGRILIH  184 (253)
T ss_dssp             EEEESCGGG--SCHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             eeecccccc--CCchhhHHHHHHHHHhcCCCcEEEEE
Confidence            999999998  56778889999999999999999886

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.70  E-value=6.2e-17  Score=126.00  Aligned_cols=120  Identities=15%  Similarity=0.120  Sum_probs=95.3

Q ss_pred             hHHHHHHHHHh-cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh
Q 025775           18 EFAKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE   96 (248)
Q Consensus        18 ~~~~~~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   96 (248)
                      ..++..++... ..++.+|||+|||+|..+..++.. ..+|+|+|+++.+++.|+++....+...+++++++|+.+... 
T Consensus        19 ~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~-~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~-   96 (186)
T d1l3ia_          19 MEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALC-   96 (186)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHT-
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEECCeEccccccccc-ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhccc-
Confidence            34455555555 458999999999999998888665 459999999999999999998887765679999999744322 


Q ss_pred             hhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhH
Q 025775           97 TQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST  151 (248)
Q Consensus        97 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~  151 (248)
                           ....||+|++....++       ...+++.+.+.|||||.+++..+..+.
T Consensus        97 -----~~~~~D~v~~~~~~~~-------~~~~~~~~~~~LkpgG~lvi~~~~~e~  139 (186)
T d1l3ia_          97 -----KIPDIDIAVVGGSGGE-------LQEILRIIKDKLKPGGRIIVTAILLET  139 (186)
T ss_dssp             -----TSCCEEEEEESCCTTC-------HHHHHHHHHHTEEEEEEEEEEECBHHH
T ss_pred             -----ccCCcCEEEEeCcccc-------chHHHHHHHHHhCcCCEEEEEeecccc
Confidence                 3578999999876654       567899999999999999988665543

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.69  E-value=3.5e-16  Score=122.41  Aligned_cols=120  Identities=16%  Similarity=0.169  Sum_probs=94.8

Q ss_pred             HHHHHHHHHh-cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCC-ceEEEEEcCCCCCchh
Q 025775           19 FAKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFE   96 (248)
Q Consensus        19 ~~~~~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~   96 (248)
                      +..+.|++.. ..++.+|||+|||+|..+..++... .+++++|+|+.+++.|+++....+.. .++.+..+|+.+ .+ 
T Consensus        39 ~~t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~-~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~-  115 (194)
T d1dusa_          39 KGTKILVENVVVDKDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NV-  115 (194)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TC-
T ss_pred             HHHHHHHHhCCcCCCCeEEEEeecCChhHHHHHhhc-cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hh-
Confidence            4444566655 3478999999999999988887655 48999999999999999988765532 358999999865 33 


Q ss_pred             hhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775           97 TQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus        97 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                           .+++||+|+|...+|.   ..+..+.+++++.++|+|||.+++.....
T Consensus       116 -----~~~~fD~Ii~~~p~~~---~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  160 (194)
T d1dusa_         116 -----KDRKYNKIITNPPIRA---GKEVLHRIIEEGKELLKDNGEIWVVIQTK  160 (194)
T ss_dssp             -----TTSCEEEEEECCCSTT---CHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred             -----ccCCceEEEEcccEEe---cchhhhhHHHHHHHhcCcCcEEEEEEeCc
Confidence                 3678999999887765   45667889999999999999988765443

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.68  E-value=9.3e-17  Score=130.62  Aligned_cols=116  Identities=19%  Similarity=0.126  Sum_probs=88.8

Q ss_pred             HHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCC
Q 025775           25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN  104 (248)
Q Consensus        25 i~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  104 (248)
                      +.....++.+|||+|||+|..+..++..+. +|+|+|+|+.|++.|+++...++.  +..++++|+..     ..  ..+
T Consensus       114 l~~~~~~g~~VLDiGcGsG~l~i~aa~~g~-~V~gvDis~~av~~A~~na~~n~~--~~~~~~~d~~~-----~~--~~~  183 (254)
T d2nxca1         114 LARHLRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGV--RPRFLEGSLEA-----AL--PFG  183 (254)
T ss_dssp             HHHHCCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTC--CCEEEESCHHH-----HG--GGC
T ss_pred             HHhhcCccCEEEEcccchhHHHHHHHhcCC-EEEEEECChHHHHHHHHHHHHcCC--ceeEEeccccc-----cc--ccc
Confidence            455677999999999999998887777665 899999999999999998876653  46788888632     11  357


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe---cChhHHHHHHH
Q 025775          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT---PDSSTIWAKYQ  157 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~---~~~~~~~~~~~  157 (248)
                      +||+|++....+       .+..++..+.++|||||+++++.   ...+.+.+.+.
T Consensus       184 ~fD~V~ani~~~-------~l~~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~  232 (254)
T d2nxca1         184 PFDLLVANLYAE-------LHAALAPRYREALVPGGRALLTGILKDRAPLVREAMA  232 (254)
T ss_dssp             CEEEEEEECCHH-------HHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHH
T ss_pred             ccchhhhccccc-------cHHHHHHHHHHhcCCCcEEEEEecchhhHHHHHHHHH
Confidence            899999876444       36778999999999999999862   22344444444

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.67  E-value=2.5e-16  Score=126.41  Aligned_cols=106  Identities=15%  Similarity=0.065  Sum_probs=82.0

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      +.||.+|||||||+|..+..++.. +.+.|+|+|+|+.|++.++.+....+   .+..+..|.......     .+..+|
T Consensus        72 ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~---ni~~i~~d~~~~~~~-----~~~~~~  143 (230)
T d1g8sa_          72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERE---NIIPILGDANKPQEY-----ANIVEK  143 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCT---TEEEEECCTTCGGGG-----TTTCCC
T ss_pred             CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhc---ccceEEEeeccCccc-----ccccce
Confidence            358999999999999999999876 44699999999999999998865543   367788887664432     245566


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       108 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      ++++...+++    .++...++.++.+.|||||.+++..
T Consensus       144 v~~i~~~~~~----~~~~~~~l~~~~r~LKpgG~~~i~~  178 (230)
T d1g8sa_         144 VDVIYEDVAQ----PNQAEILIKNAKWFLKKGGYGMIAI  178 (230)
T ss_dssp             EEEEEECCCS----TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEeeccccc----hHHHHHHHHHHHHhcccCceEEEEe
Confidence            6555554443    4567889999999999999998863

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.65  E-value=4.4e-15  Score=121.04  Aligned_cols=106  Identities=19%  Similarity=0.128  Sum_probs=89.5

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      .+..+|||||||+|..+..+++.. ..+++++|+ +.+++.|+++....+...++.+..+|.... .       +..+|+
T Consensus        80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~-~-------p~~~D~  150 (256)
T d1qzza2          80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP-L-------PVTADV  150 (256)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC-C-------SCCEEE
T ss_pred             ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeecccc-c-------cccchh
Confidence            456789999999999999998874 348999997 789999999887766666799999998652 2       456999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      |++..++|+  .+.++...+++++++.|||||.+++.-
T Consensus       151 v~~~~vLh~--~~d~~~~~lL~~i~~~LkpgG~llI~d  186 (256)
T d1qzza2         151 VLLSFVLLN--WSDEDALTILRGCVRALEPGGRLLVLD  186 (256)
T ss_dssp             EEEESCGGG--SCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhccccccc--cCcHHHHHHHHHHHhhcCCcceeEEEE
Confidence            999999998  577888999999999999999998873

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=4.3e-16  Score=125.05  Aligned_cols=117  Identities=17%  Similarity=-0.007  Sum_probs=86.9

Q ss_pred             HHHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhccc
Q 025775           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (248)
Q Consensus        23 ~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  102 (248)
                      .+......+|.+|||||||+|..+..++.....+++|+|+|+.+++.|+++....+  .++.++..|+.....    ..+
T Consensus        45 ~la~~~~~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~----~~~  118 (229)
T d1zx0a1          45 ALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAP----TLP  118 (229)
T ss_dssp             HHHHHHTTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGG----GSC
T ss_pred             HHHHhhccCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcc--ccccccccccccccc----ccc
Confidence            45555667899999999999999988887766789999999999999999876644  346677776532111    114


Q ss_pred             CCceeEEEecc-chhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          103 ANQADLVCCFQ-HLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       103 ~~~fD~V~~~~-~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      .++||.|+... ...+...+..+...++++++++|||||+|++.
T Consensus       119 ~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~  162 (229)
T d1zx0a1         119 DGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  162 (229)
T ss_dssp             TTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             cccccceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence            67899987422 11122344667889999999999999999874

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.60  E-value=3.5e-15  Score=117.90  Aligned_cols=107  Identities=11%  Similarity=-0.011  Sum_probs=81.9

Q ss_pred             hcCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           28 YSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      .+.|+.+|||+|||+|..+..++.. +.++|+|+|+|+.|++.|+++.+..+   ++.++..|+........   ....+
T Consensus        53 ~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~---ni~~i~~d~~~~~~~~~---~~~~v  126 (209)
T d1nt2a_          53 KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN---NIIPLLFDASKPWKYSG---IVEKV  126 (209)
T ss_dssp             CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS---SEEEECSCTTCGGGTTT---TCCCE
T ss_pred             CCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccC---CceEEEeeccCcccccc---ccceE
Confidence            3569999999999999999888875 44689999999999999999877654   38899999877544211   12345


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      |+|++..  +    ...+...++.++.+.|||||++++..
T Consensus       127 d~v~~~~--~----~~~~~~~~l~~~~~~LkpgG~l~i~~  160 (209)
T d1nt2a_         127 DLIYQDI--A----QKNQIEILKANAEFFLKEKGEVVIMV  160 (209)
T ss_dssp             EEEEECC--C----STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEecc--c----ChhhHHHHHHHHHHHhccCCeEEEEE
Confidence            5554432  2    23456789999999999999998874

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.57  E-value=6.6e-15  Score=124.20  Aligned_cols=106  Identities=16%  Similarity=0.109  Sum_probs=88.5

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      .++.+|||||||+|.++..+++.+..+|+|+|.|+ ++..|++.....+...++.++++|+.+.++      ++.+||+|
T Consensus        37 ~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~------~~~~~D~i  109 (328)
T d1g6q1_          37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHL------PFPKVDII  109 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC------SSSCEEEE
T ss_pred             CCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccC------cccceeEE
Confidence            47899999999999988888888888999999986 667888877777766779999999988766      46899999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEE
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i  143 (248)
                      ++....+. +........++..+.++|||||+++
T Consensus       110 ~se~~~~~-~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         110 ISEWMGYF-LLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             EECCCBTT-BSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEeccee-eccchhHHHHHHHHHhccCCCeEEE
Confidence            99776654 3456667888999999999999985

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.57  E-value=1.1e-14  Score=117.65  Aligned_cols=112  Identities=13%  Similarity=0.033  Sum_probs=90.1

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      +.||.+|||+|||+|..+..++..  +.++|+++|+++++++.|+++++......++.+.++|+.+. +      .+..|
T Consensus        83 i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~------~~~~f  155 (250)
T d1yb2a1          83 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-I------SDQMY  155 (250)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-C------CSCCE
T ss_pred             CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-c------cccee
Confidence            569999999999999988888765  45699999999999999999987654445689999998653 2      36789


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHH
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~  156 (248)
                      |.|++...         +...++.++.++|||||++++..|+-+.+.+..
T Consensus       156 D~V~ld~p---------~p~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~  196 (250)
T d1yb2a1         156 DAVIADIP---------DPWNHVQKIASMMKPGSVATFYLPNFDQSEKTV  196 (250)
T ss_dssp             EEEEECCS---------CGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHH
T ss_pred             eeeeecCC---------chHHHHHHHHHhcCCCceEEEEeCCcChHHHHH
Confidence            99976432         123678999999999999999999876654444

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.57  E-value=1.1e-14  Score=118.46  Aligned_cols=116  Identities=15%  Similarity=0.069  Sum_probs=92.8

Q ss_pred             hcCCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhc--CCCceEEEEEcCCCCCchhhhhcccC
Q 025775           28 YSHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQ--RKNFIAEFFEADPCAENFETQMQEKA  103 (248)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~~  103 (248)
                      -+.||.+|||+|||+|.++..++..  +.++|+++|+++++++.|+++++..  ....++.+.++|+.+..+      ++
T Consensus        93 ~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~------~~  166 (264)
T d1i9ga_          93 DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL------PD  166 (264)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC------CT
T ss_pred             CCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccc------cC
Confidence            3679999999999999999999876  4569999999999999999877652  223458999999876655      47


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHHH
Q 025775          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQK  158 (248)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~  158 (248)
                      +.||.|++..         ++...++.++.++|||||.+++..|+-+.+.+....
T Consensus       167 ~~fDaV~ldl---------p~P~~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~~  212 (264)
T d1i9ga_         167 GSVDRAVLDM---------LAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEA  212 (264)
T ss_dssp             TCEEEEEEES---------SCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHH
T ss_pred             CCcceEEEec---------CCHHHHHHHHHhccCCCCEEEEEeCccChHHHHHHH
Confidence            8999997532         123467889999999999999999998776655543

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.55  E-value=8.6e-15  Score=116.03  Aligned_cols=106  Identities=11%  Similarity=0.024  Sum_probs=82.1

Q ss_pred             HHHHh-cCCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhc
Q 025775           24 LIKIY-SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ  100 (248)
Q Consensus        24 li~~~-~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  100 (248)
                      +++.. +.++.+|||||||+|..+..++..  ..+.|+++|+++.+++.|+++....+. .++.++++|..+...     
T Consensus        67 ~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~-~n~~~~~~d~~~~~~-----  140 (213)
T d1dl5a1          67 FMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI-ENVIFVCGDGYYGVP-----  140 (213)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGCCG-----
T ss_pred             HHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcc-cccccccCchHHccc-----
Confidence            34443 679999999999999988888764  345899999999999999998876542 347788888755443     


Q ss_pred             ccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775          101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       101 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                       ..++||+|++..+++++  +        +++.+.|||||.+++..
T Consensus       141 -~~~~fD~I~~~~~~~~~--p--------~~l~~~LkpGG~lv~pv  175 (213)
T d1dl5a1         141 -EFSPYDVIFVTVGVDEV--P--------ETWFTQLKEGGRVIVPI  175 (213)
T ss_dssp             -GGCCEEEEEECSBBSCC--C--------HHHHHHEEEEEEEEEEB
T ss_pred             -cccchhhhhhhccHHHh--H--------HHHHHhcCCCcEEEEEE
Confidence             35789999999988762  1        24567799999998853

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.54  E-value=2.5e-14  Score=112.41  Aligned_cols=121  Identities=13%  Similarity=0.104  Sum_probs=90.4

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      ..++..|||||||+|..+..++.. +...++|+|+++.++..|.++....+. .++.++++|+..  +...+  +++++|
T Consensus        27 ~~~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l-~Nv~~~~~Da~~--l~~~~--~~~~~d  101 (204)
T d2fcaa1          27 GNDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA-QNVKLLNIDADT--LTDVF--EPGEVK  101 (204)
T ss_dssp             TSCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC-SSEEEECCCGGG--HHHHC--CTTSCC
T ss_pred             CCCCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhc-cCchhcccchhh--hhccc--Cchhhh
Confidence            345568999999999999999877 446999999999999999998877654 359999999854  32222  578899


Q ss_pred             EEEeccchhhhcCCHHH------HHHHHHHHhccccCCcEEEEEecChhHHHHHHH
Q 025775          108 LVCCFQHLQMCFETEER------ARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ  157 (248)
Q Consensus       108 ~V~~~~~l~~~~~~~~~------~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~  157 (248)
                      .|.+.+...+.  ....      ...+++.++++|||||.|.+.+-+. .+...+.
T Consensus       102 ~v~i~fp~P~~--k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~-~y~~~~~  154 (204)
T d2fcaa1         102 RVYLNFSDPWP--KKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNR-GLFEYSL  154 (204)
T ss_dssp             EEEEESCCCCC--SGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCH-HHHHHHH
T ss_pred             ccccccccccc--hhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECCh-HHHHHHH
Confidence            99888766541  1111      2579999999999999998876443 3333333

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=1.2e-14  Score=121.89  Aligned_cols=105  Identities=14%  Similarity=0.128  Sum_probs=85.2

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      ++.+|||||||+|.++..+++.+..+|+|+|.|+.+ ..+++....++...++.++++|+.+.++      +.++||+|+
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~-~~a~~~~~~n~~~~~v~~~~~~~~~~~~------~~~~~D~iv  105 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSIS-DYAVKIVKANKLDHVVTIIKGKVEEVEL------PVEKVDIII  105 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTH-HHHHHHHHHTTCTTTEEEEESCTTTCCC------SSSCEEEEE
T ss_pred             CcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHH-hhhhhHHHHhCCccccceEeccHHHccc------ccceeEEEe
Confidence            789999999999998888888777799999999865 5555555555656679999999988665      467999999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHhccccCCcEEE
Q 025775          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i  143 (248)
                      +....++ +.....+..++..+.++|+|||.++
T Consensus       106 s~~~~~~-l~~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_         106 SEWMGYC-LFYESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             ECCCBBT-BTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eeeeeee-eccHHHHHHHHHHHHhcCCCCeEEE
Confidence            8766554 3445568889999999999999886

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=4.2e-14  Score=118.32  Aligned_cols=106  Identities=15%  Similarity=0.092  Sum_probs=85.6

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      .++.+|||||||+|.++..+++.+..+|+|+|.|+.++. +++.....+...++.++++|+.+..+      +..+||+|
T Consensus        34 ~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~-a~~~~~~~~~~~~i~~~~~~~~~l~~------~~~~~D~I  106 (311)
T d2fyta1          34 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AMDIIRLNKLEDTITLIKGKIEEVHL------PVEKVDVI  106 (311)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHH-HHHHHHHTTCTTTEEEEESCTTTSCC------SCSCEEEE
T ss_pred             CCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHH-HHHHHHHhCCCccceEEEeeHHHhcC------ccccceEE
Confidence            478999999999999888888888889999999998865 44444555555679999999987665      46799999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEE
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i  143 (248)
                      ++....+. ......+..++....+.|+|||.++
T Consensus       107 vse~~~~~-~~~e~~~~~~~~a~~~~Lkp~G~ii  139 (311)
T d2fyta1         107 ISEWMGYF-LLFESMLDSVLYAKNKYLAKGGSVY  139 (311)
T ss_dssp             EECCCBTT-BTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             EEeeeeee-cccccccHHHHHHHHhcCCCCcEEe
Confidence            99766664 3445667888888899999999987

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=5.4e-14  Score=112.13  Aligned_cols=103  Identities=16%  Similarity=0.136  Sum_probs=80.0

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCC----CceEEEEEcCCCCCchhhhhccc
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRK----NFIAEFFEADPCAENFETQMQEK  102 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~  102 (248)
                      ++|+.+|||||||+|..+..++..  +.++|+++|+++++++.|++.+...+.    ..++.+.++|......      .
T Consensus        74 l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~------~  147 (224)
T d1i1na_          74 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA------E  147 (224)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG------G
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccc------h
Confidence            568999999999999988777654  456999999999999999988764321    1247889999865444      3


Q ss_pred             CCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       103 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      ..+||+|++..+++.+          .+.+.+.|||||++++.+.
T Consensus       148 ~~~fD~I~~~~~~~~i----------p~~l~~~LkpGG~LV~pv~  182 (224)
T d1i1na_         148 EAPYDAIHVGAAAPVV----------PQALIDQLKPGGRLILPVG  182 (224)
T ss_dssp             GCCEEEEEECSBBSSC----------CHHHHHTEEEEEEEEEEES
T ss_pred             hhhhhhhhhhcchhhc----------CHHHHhhcCCCcEEEEEEc
Confidence            5789999999887762          2346788999999998643

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.48  E-value=1.3e-13  Score=109.95  Aligned_cols=106  Identities=18%  Similarity=0.144  Sum_probs=82.6

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      +.||.+|||+|||+|..+..++..  +.+.|+|+|+|+.|++.++.+.+..+   .+..+..|+......   ......+
T Consensus        71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~---~~~~i~~d~~~~~~~---~~~~~~v  144 (227)
T d1g8aa_          71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR---NIVPILGDATKPEEY---RALVPKV  144 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT---TEEEEECCTTCGGGG---TTTCCCE
T ss_pred             cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC---CceEEEEECCCcccc---cccccce
Confidence            459999999999999999999876  45699999999999999998876543   267788887654332   1134678


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      |+|++...      ..++...++.++.+.|||||++++.+
T Consensus       145 D~i~~d~~------~~~~~~~~l~~~~~~LkpgG~lvi~~  178 (227)
T d1g8aa_         145 DVIFEDVA------QPTQAKILIDNAEVYLKRGGYGMIAV  178 (227)
T ss_dssp             EEEEECCC------STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEEEcc------ccchHHHHHHHHHHhcccCCeEEEEE
Confidence            98876442      23457789999999999999998863

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.48  E-value=1.1e-13  Score=116.30  Aligned_cols=125  Identities=16%  Similarity=0.080  Sum_probs=95.2

Q ss_pred             HHHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhccc
Q 025775           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (248)
Q Consensus        23 ~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  102 (248)
                      ..+..+++++.+|||+|||+|..+..++..+.++|+++|+|+.+++.|++....++...++.++++|+.+  ....+...
T Consensus       137 ~~~~~~~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~--~~~~~~~~  214 (324)
T d2as0a2         137 LALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFE--EMEKLQKK  214 (324)
T ss_dssp             HHHGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH--HHHHHHHT
T ss_pred             HHHHhhcCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhh--hhHHHHhc
Confidence            3456677889999999999999999888888779999999999999999998887766678999999854  21222224


Q ss_pred             CCceeEEEeccchh---h--hcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          103 ANQADLVCCFQHLQ---M--CFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       103 ~~~fD~V~~~~~l~---~--~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      ..+||+|++..-..   -  .........+++..+.++|+|||+++..+...
T Consensus       215 ~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~  266 (324)
T d2as0a2         215 GEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ  266 (324)
T ss_dssp             TCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred             cCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence            67899999843211   0  01112345678899999999999999886554

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.47  E-value=1.7e-13  Score=111.81  Aligned_cols=111  Identities=13%  Similarity=0.053  Sum_probs=87.8

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      +.||.+|||+|||+|..+..++..  +.++|+++|+++++++.|++.++..+....+.+...|+... +      ....+
T Consensus       101 i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~-~------~~~~~  173 (266)
T d1o54a_         101 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-F------DEKDV  173 (266)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-C------SCCSE
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccc-c------cccce
Confidence            669999999999999999888765  44699999999999999999988766555678888876332 2      35679


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHH
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAK  155 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~  155 (248)
                      |.|+...         .+...+++++.++|||||.+++..|+-+.+.+.
T Consensus       174 D~V~~d~---------p~p~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~  213 (266)
T d1o54a_         174 DALFLDV---------PDPWNYIDKCWEALKGGGRFATVCPTTNQVQET  213 (266)
T ss_dssp             EEEEECC---------SCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHH
T ss_pred             eeeEecC---------CCHHHHHHHHHhhcCCCCEEEEEeCcccHHHHH
Confidence            9885422         224568999999999999999999987665443

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=8.1e-14  Score=117.34  Aligned_cols=113  Identities=15%  Similarity=0.083  Sum_probs=84.5

Q ss_pred             HHHHh-cCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhc-------C-CCceEEEEEcCCCCC
Q 025775           24 LIKIY-SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ-------R-KNFIAEFFEADPCAE   93 (248)
Q Consensus        24 li~~~-~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~-------~-~~~~~~~~~~d~~~~   93 (248)
                      +++.. +.++.+|||||||+|..+..++.. +...++|+|+|+.+++.|+......       + ...++.|+++|+.+.
T Consensus       143 ~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~  222 (328)
T d1nw3a_         143 MIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSE  222 (328)
T ss_dssp             HHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSH
T ss_pred             HHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccccc
Confidence            34444 568999999999999999888765 5668999999999999988765431       1 124589999999876


Q ss_pred             chhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775           94 NFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus        94 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      ++.+..    ...|+|++....|     .+++...+.++.+.|||||.++..
T Consensus       223 ~~~~~~----~~advi~~~~~~f-----~~~~~~~l~e~~r~LKpGg~iv~~  265 (328)
T d1nw3a_         223 EWRERI----ANTSVIFVNNFAF-----GPEVDHQLKERFANMKEGGRIVSS  265 (328)
T ss_dssp             HHHHHH----HHCSEEEECCTTT-----CHHHHHHHHHHHTTCCTTCEEEES
T ss_pred             cccccc----CcceEEEEcceec-----chHHHHHHHHHHHhCCCCcEEEEe
Confidence            653221    2357887654332     356778999999999999999875

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.45  E-value=6.3e-13  Score=104.27  Aligned_cols=117  Identities=15%  Similarity=0.063  Sum_probs=87.1

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      ......|||||||+|..+..++.. +-..++|+|+++.++..|.++....+. .++.++++|+...  ...+  ++.++|
T Consensus        29 ~~~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l-~Ni~~~~~da~~l--~~~~--~~~~~~  103 (204)
T d1yzha1          29 GNDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDL--TDYF--EDGEID  103 (204)
T ss_dssp             TSCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCG--GGTS--CTTCCS
T ss_pred             CCCCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhcc-ccceeeecCHHHH--hhhc--cCCcee
Confidence            345568999999999999999887 456899999999999999888876553 3589999998653  2222  467899


Q ss_pred             EEEeccchhhhc----CCHHHHHHHHHHHhccccCCcEEEEEecChh
Q 025775          108 LVCCFQHLQMCF----ETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (248)
Q Consensus       108 ~V~~~~~l~~~~----~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~  150 (248)
                      .|++.+.-.+.-    ...--...+++.+.++|+|||.+.+.+-+.+
T Consensus       104 ~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~  150 (204)
T d1yzha1         104 RLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRG  150 (204)
T ss_dssp             EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHH
T ss_pred             hhcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCcc
Confidence            998877443200    0000126899999999999999988765544

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.44  E-value=2.4e-13  Score=108.02  Aligned_cols=98  Identities=13%  Similarity=0.063  Sum_probs=77.3

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      +.++.+|||||||+|..+..++... ++|+++|+++.+++.|+++....   .++.++++|......      ..++||+
T Consensus        68 l~~g~~VLdIG~GsGy~ta~La~l~-~~V~aiE~~~~~~~~A~~~~~~~---~nv~~~~~d~~~g~~------~~~pfD~  137 (224)
T d1vbfa_          68 LHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYY---NNIKLILGDGTLGYE------EEKPYDR  137 (224)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTC---SSEEEEESCGGGCCG------GGCCEEE
T ss_pred             hcccceEEEecCCCCHHHHHHHHHh-cccccccccHHHHHHHHHHHhcc---cccccccCchhhcch------hhhhHHH
Confidence            6799999999999999887776654 59999999999999999876543   358999999754332      2578999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      |++..+.+..          ...+.+.|+|||.+++.+
T Consensus       138 Iiv~~a~~~i----------p~~l~~qLk~GGrLV~pv  165 (224)
T d1vbfa_         138 VVVWATAPTL----------LCKPYEQLKEGGIMILPI  165 (224)
T ss_dssp             EEESSBBSSC----------CHHHHHTEEEEEEEEEEE
T ss_pred             HHhhcchhhh----------hHHHHHhcCCCCEEEEEE
Confidence            9998876652          234567899999999863

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.2e-12  Score=109.51  Aligned_cols=117  Identities=16%  Similarity=0.069  Sum_probs=87.2

Q ss_pred             HhcCCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhc----------CCCceEEEEEcCCCCCc
Q 025775           27 IYSHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQ----------RKNFIAEFFEADPCAEN   94 (248)
Q Consensus        27 ~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~----------~~~~~~~~~~~d~~~~~   94 (248)
                      .-+.||.+|||+|||+|.++..++..  +.++|+++|+++++++.|++.++..          ....++.+.+.|+.+..
T Consensus        94 l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~  173 (324)
T d2b25a1          94 MDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGAT  173 (324)
T ss_dssp             HTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC
T ss_pred             hCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcc
Confidence            34679999999999999999988875  4569999999999999999877642          12345899999986543


Q ss_pred             hhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHH
Q 025775           95 FETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (248)
Q Consensus        95 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~  156 (248)
                      ..  +  ....||.|++...         +...++.++.++|||||.+++..|+-+.+.+-.
T Consensus       174 ~~--~--~~~~fD~V~LD~p---------~P~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~  222 (324)
T d2b25a1         174 ED--I--KSLTFDAVALDML---------NPHVTLPVFYPHLKHGGVCAVYVVNITQVIELL  222 (324)
T ss_dssp             -----------EEEEEECSS---------STTTTHHHHGGGEEEEEEEEEEESSHHHHHHHH
T ss_pred             cc--c--CCCCcceEeecCc---------CHHHHHHHHHHhccCCCEEEEEeCCHHHHHHHH
Confidence            21  1  3568999975321         123578899999999999999999987766544

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.42  E-value=1.2e-12  Score=98.06  Aligned_cols=108  Identities=12%  Similarity=0.042  Sum_probs=82.9

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      ++.+|||+|||+|..+...+.++.++|+++|.++.+++.+++.....+...++.++++|+..  +   +....++||+|+
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~--~---l~~~~~~fDiIf   88 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAER--A---IDCLTGRFDLVF   88 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHH--H---HHHBCSCEEEEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccc--c---ccccccccceeE
Confidence            68999999999999998888888889999999999999999988877666679999999744  1   122467899998


Q ss_pred             eccchhhhcCCHHHHHHHHHHHh--ccccCCcEEEEEecC
Q 025775          111 CFQHLQMCFETEERARRLLQNVS--SLLKPGGYFLGITPD  148 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~~~--~~LkpgG~~i~~~~~  148 (248)
                      +.--  |   ........+..+.  +.|+|||++++..+.
T Consensus        89 ~DPP--y---~~~~~~~~l~~i~~~~~L~~~g~iiiE~~~  123 (152)
T d2esra1          89 LDPP--Y---AKETIVATIEALAAKNLLSEQVMVVCETDK  123 (152)
T ss_dssp             ECCS--S---HHHHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             echh--h---ccchHHHHHHHHHHCCCcCCCeEEEEEeCC
Confidence            7531  1   1233445555553  579999999987544

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.40  E-value=1.7e-12  Score=111.35  Aligned_cols=120  Identities=16%  Similarity=0.119  Sum_probs=83.2

Q ss_pred             hHHHHHHHHHhcCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcC--------CCceEEE-EE
Q 025775           18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR--------KNFIAEF-FE   87 (248)
Q Consensus        18 ~~~~~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~--------~~~~~~~-~~   87 (248)
                      .++...+-..-+.++.+|||||||+|..+..++.. +.++++|+|+|+.|++.|+++....+        ......+ ..
T Consensus       203 ~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~  282 (406)
T d1u2za_         203 NFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK  282 (406)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES
T ss_pred             HHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeee
Confidence            45555444444779999999999999999888765 66689999999999999998765421        1112333 34


Q ss_pred             cCCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775           88 ADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      ++....+....   .-..+|+|++....     ..+++...+.++.+.|||||.++.+
T Consensus       283 ~~f~~~~~~d~---~~~~adVV~inn~~-----f~~~l~~~L~ei~r~LKPGGrIVs~  332 (406)
T d1u2za_         283 KSFVDNNRVAE---LIPQCDVILVNNFL-----FDEDLNKKVEKILQTAKVGCKIISL  332 (406)
T ss_dssp             SCSTTCHHHHH---HGGGCSEEEECCTT-----CCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred             echhhcccccc---ccccceEEEEeccc-----CchHHHHHHHHHHHhcCCCcEEEEe
Confidence            55444332211   12457888765422     2456888999999999999999874

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=1.2e-12  Score=106.83  Aligned_cols=128  Identities=13%  Similarity=0.155  Sum_probs=92.6

Q ss_pred             CCcccchhhhhHhHHHHHHHHHhcCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEE
Q 025775            6 IPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAE   84 (248)
Q Consensus         6 ~~r~~~~~~~~~~~~~~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~   84 (248)
                      ++|++|-..  ..    ..+......+.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|++.....+. .++.
T Consensus        89 IPRpeTE~l--v~----~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~-~~v~  161 (274)
T d2b3ta1          89 IPRPDTECL--VE----QALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI-KNIH  161 (274)
T ss_dssp             CCCTTHHHH--HH----HHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC-CSEE
T ss_pred             ccccchhhh--hh----hHhhhhcccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCc-ccce
Confidence            467777632  12    233344456789999999999998888765 456999999999999999998876654 2489


Q ss_pred             EEEcCCCCCchhhhhcccCCceeEEEeccch-------------hh----hcCC----HHHHHHHHHHHhccccCCcEEE
Q 025775           85 FFEADPCAENFETQMQEKANQADLVCCFQHL-------------QM----CFET----EERARRLLQNVSSLLKPGGYFL  143 (248)
Q Consensus        85 ~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l-------------~~----~~~~----~~~~~~~l~~~~~~LkpgG~~i  143 (248)
                      ++++|+.+. +      .+.+||+|+|+--.             .+    .+..    ......+++++.++|+|||.++
T Consensus       162 ~~~~d~~~~-~------~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~  234 (274)
T d2b3ta1         162 ILQSDWFSA-L------AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLL  234 (274)
T ss_dssp             EECCSTTGG-G------TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEE
T ss_pred             eeecccccc-c------CCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEE
Confidence            999998552 2      35799999996211             00    0111    1346789999999999999999


Q ss_pred             EEec
Q 025775          144 GITP  147 (248)
Q Consensus       144 ~~~~  147 (248)
                      +-+.
T Consensus       235 lEig  238 (274)
T d2b3ta1         235 LEHG  238 (274)
T ss_dssp             EECC
T ss_pred             EEEC
Confidence            8743

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.34  E-value=3.6e-12  Score=97.20  Aligned_cols=120  Identities=11%  Similarity=0.138  Sum_probs=79.6

Q ss_pred             hhHhHHHHHHHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCc
Q 025775           15 RLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN   94 (248)
Q Consensus        15 ~~~~~~~~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~   94 (248)
                      .+.||+.     ....++.+|||+|||+|..+...+..+. +++++|+|+.+++.+++.++..+...++  ...+...  
T Consensus        30 ~lf~~l~-----~~~~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~~v--~~~~~d~--   99 (171)
T d1ws6a1          30 ALFDYLR-----LRYPRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARV--VALPVEV--   99 (171)
T ss_dssp             HHHHHHH-----HHCTTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEE--ECSCHHH--
T ss_pred             HHHHHhh-----ccccCCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhccccce--eeeehhc--
Confidence            4556643     3456789999999999998888777776 8999999999999999988776543333  3333311  


Q ss_pred             hhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775           95 FETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus        95 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      +.........+||+|++.--.+.  ...+....+++  ...|+|||++++..+.
T Consensus       100 ~~~~~~~~~~~fD~If~DPPY~~--~~~~~l~~l~~--~~ll~~~g~ivie~~~  149 (171)
T d1ws6a1         100 FLPEAKAQGERFTVAFMAPPYAM--DLAALFGELLA--SGLVEAGGLYVLQHPK  149 (171)
T ss_dssp             HHHHHHHTTCCEEEEEECCCTTS--CTTHHHHHHHH--HTCEEEEEEEEEEEET
T ss_pred             ccccccccCCccceeEEcccccc--CHHHHHHHHHH--cCCcCCCeEEEEEecC
Confidence            11112224578999988543222  22333444443  3589999999886543

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.33  E-value=1.6e-12  Score=105.63  Aligned_cols=107  Identities=14%  Similarity=0.022  Sum_probs=85.4

Q ss_pred             HHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccC
Q 025775           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA  103 (248)
Q Consensus        24 li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  103 (248)
                      .+.....++.+|||+|||+|.++..++..+.++|+++|+|+.+++.+++....++...+++++++|+.+..       ..
T Consensus       100 ri~~~~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~-------~~  172 (260)
T d2frna1         100 RMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-------GE  172 (260)
T ss_dssp             HHHHHCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-------CC
T ss_pred             HHHhhcCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhc-------cC
Confidence            34456778999999999999999988887767999999999999999998887776667999999987643       35


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +.||.|++..- +.       ...++..+.+.|++||++.+.
T Consensus       173 ~~~D~Ii~~~p-~~-------~~~~l~~a~~~l~~gG~lh~~  206 (260)
T d2frna1         173 NIADRILMGYV-VR-------THEFIPKALSIAKDGAIIHYH  206 (260)
T ss_dssp             SCEEEEEECCC-SS-------GGGGHHHHHHHEEEEEEEEEE
T ss_pred             CCCCEEEECCC-Cc-------hHHHHHHHHhhcCCCCEEEEE
Confidence            78999987532 11       234566777889999998654

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.31  E-value=2.2e-12  Score=107.93  Aligned_cols=115  Identities=13%  Similarity=0.070  Sum_probs=85.5

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      ++.+|||++||+|+.+..++. +.++|+++|+|+.+++.|++....++. .++.++++|+.+  +...+....++||+|+
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a~-g~~~V~~vD~s~~al~~a~~n~~~ngl-~~~~~i~~d~~~--~~~~~~~~~~~fD~Vi  220 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLAL-GFREVVAVDSSAEALRRAEENARLNGL-GNVRVLEANAFD--LLRRLEKEGERFDLVV  220 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHHH-HEEEEEEEESCHHHHHHHHHHHHHTTC-TTEEEEESCHHH--HHHHHHHTTCCEEEEE
T ss_pred             CCCeeeccCCCCcHHHHHHHh-cCCcEEeecchHHHHHHHHHHHHHcCC-CCcceeeccHHH--HhhhhHhhhcCCCEEE
Confidence            688999999999999987765 455999999999999999998877664 358899999844  2222333467899999


Q ss_pred             eccchh-----hhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          111 CFQHLQ-----MCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       111 ~~~~l~-----~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      +..-..     ...........++..+.++|+|||.++.++.+.
T Consensus       221 ~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~  264 (318)
T d1wxxa2         221 LDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH  264 (318)
T ss_dssp             ECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             EcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            853111     111123345678999999999999999886554

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.31  E-value=9.3e-12  Score=103.84  Aligned_cols=120  Identities=12%  Similarity=0.064  Sum_probs=89.9

Q ss_pred             hcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCC-ceEEEEEcCCCCCchhhhhcccCCce
Q 025775           28 YSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      ...++.+|||++||+|+++...+..+...|+++|+|+.+++.|++.++.++.. .++.++++|+.+  ..+.+.....+|
T Consensus       141 ~~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~--~l~~~~~~~~~f  218 (317)
T d2b78a2         141 GSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFD--YFKYARRHHLTY  218 (317)
T ss_dssp             TTTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHH--HHHHHHHTTCCE
T ss_pred             HhhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHH--HHHHHHhhcCCC
Confidence            34568999999999999988877778889999999999999999988766542 458999999843  222222245689


Q ss_pred             eEEEeccc---h--hhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          107 DLVCCFQH---L--QMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       107 D~V~~~~~---l--~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      |+|++.--   -  ...+....+...++..+.++|+|||++++++.+.
T Consensus       219 D~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~  266 (317)
T d2b78a2         219 DIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA  266 (317)
T ss_dssp             EEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             CEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            99998421   1  1112233457789999999999999999986554

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.28  E-value=6e-12  Score=99.21  Aligned_cols=101  Identities=12%  Similarity=0.052  Sum_probs=79.8

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      +.++.+|||||||+|..+..++.....+|+++|+++.+++.|+++....+. .++.++++|......      ..++||.
T Consensus        76 l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~-~nv~~~~gd~~~g~~------~~~pfD~  148 (215)
T d1jg1a_          76 LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGV-KNVHVILGDGSKGFP------PKAPYDV  148 (215)
T ss_dssp             CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGCCG------GGCCEEE
T ss_pred             cCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCC-ceeEEEECccccCCc------ccCccee
Confidence            679999999999999988877655224799999999999999998877552 458999999865433      3678999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      |++..+...  .+        ..+.+.|+|||.+++.+
T Consensus       149 Iiv~~a~~~--ip--------~~l~~qL~~gGrLv~pv  176 (215)
T d1jg1a_         149 IIVTAGAPK--IP--------EPLIEQLKIGGKLIIPV  176 (215)
T ss_dssp             EEECSBBSS--CC--------HHHHHTEEEEEEEEEEE
T ss_pred             EEeeccccc--CC--------HHHHHhcCCCCEEEEEE
Confidence            999887765  21        22556899999999864

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.27  E-value=1.8e-11  Score=101.19  Aligned_cols=125  Identities=16%  Similarity=0.143  Sum_probs=87.5

Q ss_pred             hHHHHHHHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCC-ceEEEEEcCCCCCchh
Q 025775           18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFE   96 (248)
Q Consensus        18 ~~~~~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~   96 (248)
                      .|++..+ . -..++.+|||++||+|.++..++..+. +|+++|+|+.+++.|++....++.. .++.|+++|+.+  +.
T Consensus       121 ~~~~~~~-~-~~~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~--~l  195 (309)
T d2igta1         121 EWLKNAV-E-TADRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMK--FI  195 (309)
T ss_dssp             HHHHHHH-H-HSSSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHH--HH
T ss_pred             HHHHHHH-h-hccCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHH--hH
Confidence            4554443 2 234678999999999999988877766 8999999999999999987765543 358999999844  22


Q ss_pred             hhhcccCCceeEEEec---cchhh---hcCCHHHHHHHHHHHhccccCCcEEEEEec
Q 025775           97 TQMQEKANQADLVCCF---QHLQM---CFETEERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus        97 ~~~~~~~~~fD~V~~~---~~l~~---~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      ........+||+|++.   ++...   .+.-......++..+.++|+|||.+++.+.
T Consensus       196 ~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~  252 (309)
T d2igta1         196 QREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA  252 (309)
T ss_dssp             HHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred             HHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEec
Confidence            2222235789999984   22110   112234567788889999999997665543

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.26  E-value=4.3e-11  Score=92.85  Aligned_cols=119  Identities=15%  Similarity=0.162  Sum_probs=79.0

Q ss_pred             hHHHHHHHHHhcCCCCeEEEEcCCCCccHhHH----HHc----C-CCeEEEEeCChHHHHHHHHHH-H------------
Q 025775           18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKW----ETA----L-IANYIGIDVATSGIGEARDTW-E------------   75 (248)
Q Consensus        18 ~~~~~~li~~~~~~~~~VLDlGcG~G~~~~~l----~~~----~-~~~v~giDis~~~l~~a~~~~-~------------   75 (248)
                      ++++..++.  ..+..+||++|||+|.-.-.+    ...    + .-+++|+|+|+.+++.|++.. .            
T Consensus        13 ~~L~~~~~~--~~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~   90 (193)
T d1af7a2          13 PILAEHARR--RHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQL   90 (193)
T ss_dssp             HHHHHHHHH--SCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHH
T ss_pred             HHHHHHHhc--cCCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHH
Confidence            444444432  235569999999999754222    221    1 117999999999999998521 0            


Q ss_pred             -----hcCC------------CceEEEEEcCCCCCchhhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccC
Q 025775           76 -----NQRK------------NFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKP  138 (248)
Q Consensus        76 -----~~~~------------~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp  138 (248)
                           ....            ...+.+.+.+.......     ..++||+|+|..+++|  .+.+...++++++++.|+|
T Consensus        91 ~~yf~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~fDvI~CRNVLiY--f~~~~~~~vl~~l~~~L~p  163 (193)
T d1af7a2          91 QRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYN-----VPGPFDAIFCRNVMIY--FDKTTQEDILRRFVPLLKP  163 (193)
T ss_dssp             HHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCSSCC-----CCCCEEEEEECSSGGG--SCHHHHHHHHHHHGGGEEE
T ss_pred             hhceeecCCCccceeehHHHHHHHHHHhhhhccccccC-----CCCCccEEEeehhHHh--cCHHHHHHHHHHHHHHhCC
Confidence                 0000            01134445554332211     3578999999999999  5688889999999999999


Q ss_pred             CcEEEEE
Q 025775          139 GGYFLGI  145 (248)
Q Consensus       139 gG~~i~~  145 (248)
                      ||++++.
T Consensus       164 GG~L~lG  170 (193)
T d1af7a2         164 DGLLFAG  170 (193)
T ss_dssp             EEEEEEC
T ss_pred             CcEEEEe
Confidence            9998864

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.25  E-value=1.8e-11  Score=97.09  Aligned_cols=102  Identities=11%  Similarity=0.049  Sum_probs=76.3

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc----C---CCeEEEEeCChHHHHHHHHHHHhcC----CCceEEEEEcCCCCCchhh
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA----L---IANYIGIDVATSGIGEARDTWENQR----KNFIAEFFEADPCAENFET   97 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~----~---~~~v~giDis~~~l~~a~~~~~~~~----~~~~~~~~~~d~~~~~~~~   97 (248)
                      +.|+.+|||||||+|..+..++..    +   ..+|+++|+++++++.|++......    ...++.+.++|......  
T Consensus        78 l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~--  155 (223)
T d1r18a_          78 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYP--  155 (223)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCG--
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccccc--
Confidence            568999999999999988776543    1   2489999999999999987653311    01248899999865443  


Q ss_pred             hhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEe
Q 025775           98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus        98 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                          ..++||+|++..++..  .+        +.+.+.|+|||++++..
T Consensus       156 ----~~~~fD~Iiv~~a~~~--~p--------~~l~~~Lk~gG~lV~pv  190 (223)
T d1r18a_         156 ----PNAPYNAIHVGAAAPD--TP--------TELINQLASGGRLIVPV  190 (223)
T ss_dssp             ----GGCSEEEEEECSCBSS--CC--------HHHHHTEEEEEEEEEEE
T ss_pred             ----cccceeeEEEEeechh--ch--------HHHHHhcCCCcEEEEEE
Confidence                3578999999887765  11        23568999999998863

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.18  E-value=1.7e-10  Score=89.24  Aligned_cols=122  Identities=18%  Similarity=0.176  Sum_probs=88.5

Q ss_pred             HHHHh-cCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhc-
Q 025775           24 LIKIY-SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ-  100 (248)
Q Consensus        24 li~~~-~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-  100 (248)
                      +++.+ ..++..+||++||+|+++..++.. +..+++|+|.++.|++.|++++...+  .++.+++++..+....  +. 
T Consensus        15 vi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~--~r~~~~~~~f~~~~~~--~~~   90 (192)
T d1m6ya2          15 VIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFL--LKT   90 (192)
T ss_dssp             HHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHH--HHH
T ss_pred             HHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc--ccccchhHHHhhHHHH--HHH
Confidence            34443 348899999999999999988876 45699999999999999999886643  3488999987553221  11 


Q ss_pred             ccCCceeEEEeccchh-----hhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          101 EKANQADLVCCFQHLQ-----MCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       101 ~~~~~fD~V~~~~~l~-----~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      ...+++|.|+...++-     ..-.........+..+.++|+|||.+++....+
T Consensus        91 ~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s  144 (192)
T d1m6ya2          91 LGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHS  144 (192)
T ss_dssp             TTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSH
T ss_pred             cCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecccc
Confidence            1347899987654321     101224457789999999999999998876554

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.16  E-value=2.6e-10  Score=87.52  Aligned_cols=124  Identities=16%  Similarity=0.078  Sum_probs=87.9

Q ss_pred             hHHHHHHHHHhcC--CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCch
Q 025775           18 EFAKTALIKIYSH--PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF   95 (248)
Q Consensus        18 ~~~~~~li~~~~~--~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~   95 (248)
                      ..++..+.+...+  .+.+|||++||+|......+..+...|+++|.++.+++.+++.....+...++.++++|+..  +
T Consensus        26 ~~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~--~  103 (182)
T d2fhpa1          26 DKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANR--A  103 (182)
T ss_dssp             HHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH--H
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchh--h
Confidence            3444444444332  68999999999999999888989889999999999999999988765555568999999843  2


Q ss_pred             hhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHh--ccccCCcEEEEEecC
Q 025775           96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVS--SLLKPGGYFLGITPD  148 (248)
Q Consensus        96 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~--~~LkpgG~~i~~~~~  148 (248)
                      ...+.....+||+|++.--...  .   .....+..+.  ..|++||++++..+.
T Consensus       104 l~~~~~~~~~fDlIflDPPY~~--~---~~~~~l~~i~~~~~L~~~giIi~E~~~  153 (182)
T d2fhpa1         104 LEQFYEEKLQFDLVLLDPPYAK--Q---EIVSQLEKMLERQLLTNEAVIVCETDK  153 (182)
T ss_dssp             HHHHHHTTCCEEEEEECCCGGG--C---CHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             hhhhcccCCCcceEEechhhhh--h---HHHHHHHHHHHCCCCCCCEEEEEEcCC
Confidence            2222223568999987542221  1   2344555554  469999999886543

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.16  E-value=3e-11  Score=93.75  Aligned_cols=68  Identities=16%  Similarity=0.066  Sum_probs=57.0

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      .|.+|||+|||+|..+..++..+.++|+|+|+++.+++.|++....      +.++++|+.+         .+++||+|+
T Consensus        48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~~------~~~~~~D~~~---------l~~~fD~Vi  112 (197)
T d1ne2a_          48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGG------VNFMVADVSE---------ISGKYDTWI  112 (197)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTT------SEEEECCGGG---------CCCCEEEEE
T ss_pred             CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHcccc------ccEEEEehhh---------cCCcceEEE
Confidence            6899999999999887777777888999999999999999876532      7899999843         257899999


Q ss_pred             ecc
Q 025775          111 CFQ  113 (248)
Q Consensus       111 ~~~  113 (248)
                      ++-
T Consensus       113 ~NP  115 (197)
T d1ne2a_         113 MNP  115 (197)
T ss_dssp             ECC
T ss_pred             eCc
Confidence            874

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.14  E-value=1.5e-10  Score=90.28  Aligned_cols=74  Identities=16%  Similarity=0.063  Sum_probs=60.8

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      .|.+|||+|||+|..+..++..+...|+|+|+|+.+++.|++.....+  .+..++++|+..         .+.+||+|+
T Consensus        46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~--~~~~~~~~d~~~---------~~~~fD~Vi  114 (201)
T d1wy7a1          46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFK--GKFKVFIGDVSE---------FNSRVDIVI  114 (201)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGT--TSEEEEESCGGG---------CCCCCSEEE
T ss_pred             CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcC--CCceEEECchhh---------hCCcCcEEE
Confidence            688999999999998887777777799999999999999998876554  357888988733         257899999


Q ss_pred             eccch
Q 025775          111 CFQHL  115 (248)
Q Consensus       111 ~~~~l  115 (248)
                      +.--.
T Consensus       115 ~nPP~  119 (201)
T d1wy7a1         115 MNPPF  119 (201)
T ss_dssp             ECCCC
T ss_pred             EcCcc
Confidence            87543

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.11  E-value=5.1e-10  Score=90.84  Aligned_cols=129  Identities=19%  Similarity=0.091  Sum_probs=86.7

Q ss_pred             CCcccchhhhhHhHHHHHHHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEE
Q 025775            6 IPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEF   85 (248)
Q Consensus         6 ~~r~~~~~~~~~~~~~~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~   85 (248)
                      ++|++|-.  +..++...+-   ..+..+|||+|||+|..+..++..+..+|+++|+|+.+++.|++.....+...++.+
T Consensus        90 IPRpeTE~--lv~~~~~~~~---~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i  164 (271)
T d1nv8a_          90 VPRPETEE--LVELALELIR---KYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFV  164 (271)
T ss_dssp             CCCTTHHH--HHHHHHHHHH---HHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEE
T ss_pred             Cchhhhhh--hhhhhhhhhc---cccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEE
Confidence            67887763  2233322211   124568999999999988887776767999999999999999998887766566788


Q ss_pred             EEcCCCCCchhhhhcccCCceeEEEeccc-------hhh--hcCC----------HHHHHHHHHHHhccccCCcEEEEEe
Q 025775           86 FEADPCAENFETQMQEKANQADLVCCFQH-------LQM--CFET----------EERARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus        86 ~~~d~~~~~~~~~~~~~~~~fD~V~~~~~-------l~~--~~~~----------~~~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      ...|..+...     ...++||+|+|+--       +..  .+++          .+....+   +.+.|+|||.+++-+
T Consensus       165 ~~~~~~~~~~-----~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i---~~~~L~~~G~l~~Ei  236 (271)
T d1nv8a_         165 RKGEFLEPFK-----EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREF---FGRYDTSGKIVLMEI  236 (271)
T ss_dssp             EESSTTGGGG-----GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHH---HHHCCCTTCEEEEEC
T ss_pred             eecccccccc-----cccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHH---HHHhcCCCCEEEEEE
Confidence            8888754321     13578999999621       000  0111          1223344   457899999998875


Q ss_pred             c
Q 025775          147 P  147 (248)
Q Consensus       147 ~  147 (248)
                      .
T Consensus       237 g  237 (271)
T d1nv8a_         237 G  237 (271)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.11  E-value=2.2e-10  Score=90.17  Aligned_cols=120  Identities=13%  Similarity=0.060  Sum_probs=85.0

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhc--ccCCce
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ--EKANQA  106 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~f  106 (248)
                      +..+|||+|||+|..+..++..  ..++++++|+++.+++.|+..+...+...+++++++|..+.  .+.+.  ....+|
T Consensus        56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~--l~~l~~~~~~~~~  133 (214)
T d2cl5a1          56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDL--IPQLKKKYDVDTL  133 (214)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH--GGGHHHHSCCCCE
T ss_pred             CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeecccccc--ccchhhccccccc
Confidence            5679999999999999888765  34699999999999999999888777666799999997542  11111  124689


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE---ecChhHHHHHHH
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI---TPDSSTIWAKYQ  157 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~---~~~~~~~~~~~~  157 (248)
                      |+|++...-..     ......+.+..++|+|||++++.   .+......+..+
T Consensus       134 D~ifiD~~~~~-----~~~~~~l~~~~~lLkpGGvIv~Ddvl~~g~~~~~~~vr  182 (214)
T d2cl5a1         134 DMVFLDHWKDR-----YLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVR  182 (214)
T ss_dssp             EEEEECSCGGG-----HHHHHHHHHHTTCEEEEEEEEESCCCCCCCHHHHHHHH
T ss_pred             ceeeecccccc-----cccHHHHHHHhCccCCCcEEEEeCcCCCCChHHHHHHh
Confidence            99987642221     11233467778999999998875   344444444333

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.8e-10  Score=90.90  Aligned_cols=108  Identities=14%  Similarity=0.093  Sum_probs=82.9

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      +..+|||||||+|..+..++..  .-++++.+|+++...+.|++.+...+...+++++.+|+.+.-.........++||+
T Consensus        59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~  138 (219)
T d2avda1          59 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV  138 (219)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred             CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCccE
Confidence            5689999999999988888765  24699999999999999999998877777799999997442110011113568999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      |+....-.       .....++.+.+.|+|||++++.
T Consensus       139 ifiD~dk~-------~y~~~~~~~~~lL~~GGvii~D  168 (219)
T d2avda1         139 AVVDADKE-------NCSAYYERCLQLLRPGGILAVL  168 (219)
T ss_dssp             EEECSCST-------THHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEeCCHH-------HHHHHHHHHHHHhcCCcEEEEe
Confidence            98765332       2456677888999999999997

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.05  E-value=1.1e-09  Score=83.91  Aligned_cols=106  Identities=8%  Similarity=0.012  Sum_probs=78.3

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      .+.+|||++||+|..+...+.++...|+++|.++.+++.+++.....+. .+..+++.|+..     .+.....+||+|+
T Consensus        43 ~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~-~~~~ii~~d~~~-----~l~~~~~~fDlIf  116 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMS-----FLAQKGTPHNIVF  116 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHH-----HHSSCCCCEEEEE
T ss_pred             chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccc-cceeeeeecccc-----cccccccccCEEE
Confidence            6789999999999999988888988999999999999999987765432 347788888632     2222467899998


Q ss_pred             eccchhhhcCCHHHHHHHHHHHh--ccccCCcEEEEEec
Q 025775          111 CFQHLQMCFETEERARRLLQNVS--SLLKPGGYFLGITP  147 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~~~--~~LkpgG~~i~~~~  147 (248)
                      +.--...     .....++..+.  ..|+++|++++..+
T Consensus       117 ~DPPY~~-----~~~~~~l~~l~~~~~L~~~~iIiiE~~  150 (183)
T d2fpoa1         117 VDPPFRR-----GLLEETINLLEDNGWLADEALIYVESE  150 (183)
T ss_dssp             ECCSSST-----TTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             EcCcccc-----chHHHHHHHHHHCCCCCCCeEEEEEec
Confidence            8643221     12344455444  46999999998644

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=4.5e-09  Score=84.40  Aligned_cols=127  Identities=10%  Similarity=0.046  Sum_probs=85.7

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      +..+|||||||+|.....++.. +..+++|+|+|+.+++.|++..+.++...++.+.+.+....-+........++||+|
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i  140 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  140 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEE
Confidence            4568999999999988887765 345999999999999999999888777677888877654432211111135689999


Q ss_pred             EeccchhhhcCC-------------------------------HHHHHHHHHHHhccccCCcEEEEEecCh---hHHHHH
Q 025775          110 CCFQHLQMCFET-------------------------------EERARRLLQNVSSLLKPGGYFLGITPDS---STIWAK  155 (248)
Q Consensus       110 ~~~~~l~~~~~~-------------------------------~~~~~~~l~~~~~~LkpgG~~i~~~~~~---~~~~~~  155 (248)
                      +|+--.+..-+.                               ......++++....++..|.+...+...   ..+.+.
T Consensus       141 vsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ig~~~~l~~i~~~  220 (250)
T d2h00a1         141 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEE  220 (250)
T ss_dssp             EECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHHHH
T ss_pred             EecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEecchhhHHHHHHH
Confidence            996533311000                               0124567777788888888876554432   445555


Q ss_pred             HH
Q 025775          156 YQ  157 (248)
Q Consensus       156 ~~  157 (248)
                      +.
T Consensus       221 L~  222 (250)
T d2h00a1         221 LR  222 (250)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.94  E-value=5.9e-09  Score=83.40  Aligned_cols=97  Identities=19%  Similarity=0.159  Sum_probs=76.9

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      +...+|||||||+|..+..++++ +-.+++..|+ |..++.       .....++.++.+|..+..         ...|+
T Consensus        80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~-------~~~~~ri~~~~gd~~~~~---------p~~D~  142 (244)
T d1fp1d2          80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIEN-------APPLSGIEHVGGDMFASV---------PQGDA  142 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTT-------CCCCTTEEEEECCTTTCC---------CCEEE
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhc-------cCCCCCeEEecCCccccc---------ccceE
Confidence            34578999999999999999877 3348899997 344432       222345999999986421         24599


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       109 V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +++..++|.  .+.++...+++++++.|+|||.+++.
T Consensus       143 ~~l~~vLh~--~~de~~~~iL~~~~~aL~pgg~llI~  177 (244)
T d1fp1d2         143 MILKAVCHN--WSDEKCIEFLSNCHKALSPNGKVIIV  177 (244)
T ss_dssp             EEEESSGGG--SCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEehhhhh--CCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            999999998  68889999999999999999998887

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.86  E-value=6.4e-09  Score=82.20  Aligned_cols=106  Identities=10%  Similarity=0.049  Sum_probs=82.9

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhh-cc--cCCc
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM-QE--KANQ  105 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~--~~~~  105 (248)
                      +..+|||||+++|..+..++..  ..++++.+|.++...+.|++.+...+...++.++.+|+.+  ..+.+ .+  ..++
T Consensus        59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~--~L~~l~~~~~~~~~  136 (227)
T d1susa1          59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALP--VLDEMIKDEKNHGS  136 (227)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHH--HHHHHHHCGGGTTC
T ss_pred             CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHH--HHHHHHhccccCCc
Confidence            5689999999999988888764  3469999999999999999999887777789999999743  11111 11  2468


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      ||+|+.-..-.       .....++.+.++|+|||++++.
T Consensus       137 fD~iFiDa~k~-------~y~~~~e~~~~ll~~gGiii~D  169 (227)
T d1susa1         137 YDFIFVDADKD-------NYLNYHKRLIDLVKVGGVIGYD  169 (227)
T ss_dssp             BSEEEECSCST-------THHHHHHHHHHHBCTTCCEEEE
T ss_pred             eeEEEeccchh-------hhHHHHHHHHhhcCCCcEEEEc
Confidence            99998865322       2556778888999999999998

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.82  E-value=5.5e-09  Score=87.15  Aligned_cols=109  Identities=21%  Similarity=0.220  Sum_probs=77.7

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc------CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCC
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA------LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN  104 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~------~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  104 (248)
                      ++.+|||.|||+|.++..+...      ....++|+|+++.++..|+......+  ....+.+.|.....       ...
T Consensus       117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~-------~~~  187 (328)
T d2f8la1         117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR--QKMTLLHQDGLANL-------LVD  187 (328)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT--CCCEEEESCTTSCC-------CCC
T ss_pred             CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhh--hhhhhhcccccccc-------ccc
Confidence            5678999999999988776532      12379999999999999887665443  23567777765433       357


Q ss_pred             ceeEEEeccchhhhcCCHH---------------HHHHHHHHHhccccCCcEEEEEecCh
Q 025775          105 QADLVCCFQHLQMCFETEE---------------RARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~---------------~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      +||+|++.--.... ...+               ....+++.+.+.|+|||.+++.+|++
T Consensus       188 ~fD~vi~NPPy~~~-~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~  246 (328)
T d2f8la1         188 PVDVVISDLPVGYY-PDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA  246 (328)
T ss_dssp             CEEEEEEECCCSEE-SCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred             cccccccCCCCCCC-ccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCc
Confidence            89999997432110 1111               12347999999999999999888765

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.82  E-value=6.8e-08  Score=79.75  Aligned_cols=113  Identities=14%  Similarity=0.063  Sum_probs=80.6

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhc----CCCceEEEEEcCCCCCchhhhhcccC
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ----RKNFIAEFFEADPCAENFETQMQEKA  103 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~----~~~~~~~~~~~d~~~~~~~~~~~~~~  103 (248)
                      .+...+||.||.|.|..+..+++. +..+++++|+++.+++.|++.+...    ....+++++.+|+..     .+...+
T Consensus        75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~-----~l~~~~  149 (312)
T d1uira_          75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARA-----YLERTE  149 (312)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHH-----HHHHCC
T ss_pred             CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHH-----HhhhcC
Confidence            446689999999999988888766 4569999999999999999876331    112458999999743     233346


Q ss_pred             CceeEEEeccchhhhcCCH-H--HHHHHHHHHhccccCCcEEEEEe
Q 025775          104 NQADLVCCFQHLQMCFETE-E--RARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~-~--~~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      .+||+|++...=.+..... .  ...++++.+++.|+|||+++...
T Consensus       150 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~  195 (312)
T d1uira_         150 ERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (312)
T ss_dssp             CCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence            7899998643110000101 0  13678999999999999999863

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.79  E-value=1.5e-08  Score=80.99  Aligned_cols=96  Identities=16%  Similarity=0.090  Sum_probs=76.0

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      ...+|||||||+|..+..++.. +..+++..|+ |..++.+       +...++.++.+|..+.         ...+|++
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~-------~~~~rv~~~~gD~f~~---------~p~aD~~  142 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENL-------SGSNNLTYVGGDMFTS---------IPNADAV  142 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC-------CCBTTEEEEECCTTTC---------CCCCSEE
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhC-------cccCceEEEecCcccC---------CCCCcEE
Confidence            4468999999999999998877 3459999998 4444432       2234599999998652         2357999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCC---cEEEEE
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPG---GYFLGI  145 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~Lkpg---G~~i~~  145 (248)
                      ++...+|.  .+.++..++++++++.|+||   |.+++.
T Consensus       143 ~l~~vLHd--w~d~~~~~iL~~~~~al~pgg~~~~lli~  179 (244)
T d1fp2a2         143 LLKYILHN--WTDKDCLRILKKCKEAVTNDGKRGKVTII  179 (244)
T ss_dssp             EEESCGGG--SCHHHHHHHHHHHHHHHSGGGCCCEEEEE
T ss_pred             EEEeeccc--CChHHHHHHHHHHHHHcCcccCCcEEEEE
Confidence            99999998  78899999999999999998   666665

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.74  E-value=5e-09  Score=85.33  Aligned_cols=110  Identities=14%  Similarity=0.099  Sum_probs=80.1

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhc---------CCCceEEEEEcCCCCCchhhhh
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ---------RKNFIAEFFEADPCAENFETQM   99 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~---------~~~~~~~~~~~d~~~~~~~~~~   99 (248)
                      .++..+||-||+|.|..+..+...+..+++++||++.+++.|+..+...         ....+++++.+|+..  +   +
T Consensus        70 ~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~--~---l  144 (276)
T d1mjfa_          70 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFE--F---I  144 (276)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHH--H---H
T ss_pred             CCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHH--H---H
Confidence            4567899999999999888887777779999999999999998754321         112468999999732  2   2


Q ss_pred             cccCCceeEEEeccchhhhcCCHHH--HHHHHHHHhccccCCcEEEEEe
Q 025775          100 QEKANQADLVCCFQHLQMCFETEER--ARRLLQNVSSLLKPGGYFLGIT  146 (248)
Q Consensus       100 ~~~~~~fD~V~~~~~l~~~~~~~~~--~~~~l~~~~~~LkpgG~~i~~~  146 (248)
                      . ..++||+|++...-..  .....  ..++++.+++.|+|||+++...
T Consensus       145 ~-~~~~yDvIi~D~~~~~--~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~  190 (276)
T d1mjfa_         145 K-NNRGFDVIIADSTDPV--GPAKVLFSEEFYRYVYDALNNPGIYVTQA  190 (276)
T ss_dssp             H-HCCCEEEEEEECCCCC-------TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             h-ccCCCCEEEEeCCCCC--CCcccccCHHHHHhhHhhcCCCceEEEec
Confidence            2 2578999987542221  11111  3679999999999999999874

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.68  E-value=4.3e-08  Score=78.23  Aligned_cols=96  Identities=18%  Similarity=0.125  Sum_probs=74.3

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      ...+|||||||+|..+..+++. +..++++.|+.+. ++.+       ....++.++.+|..+..       +  ..|++
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~~~-------~~~~r~~~~~~d~~~~~-------P--~ad~~  143 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IEDA-------PSYPGVEHVGGDMFVSI-------P--KADAV  143 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TTTC-------CCCTTEEEEECCTTTCC-------C--CCSCE
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hhhc-------ccCCceEEecccccccC-------C--CcceE
Confidence            3578999999999999999887 3358999998653 3222       22245899999986532       1  35677


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      ++...+|.  .+.++...+++++++.|+|||.+++.
T Consensus       144 ~l~~vlh~--~~d~~~~~iL~~~~~al~pgg~~li~  177 (243)
T d1kyza2         144 FMKWICHD--WSDEHCLKFLKNCYEALPDNGKVIVA  177 (243)
T ss_dssp             ECSSSSTT--SCHHHHHHHHHHHHHHCCSSSCEEEE
T ss_pred             EEEEEeec--CCHHHHHHHHHHHHHhcCCCceEEEE
Confidence            77888887  67889999999999999999988876

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.67  E-value=6.5e-08  Score=73.55  Aligned_cols=111  Identities=18%  Similarity=0.117  Sum_probs=76.7

Q ss_pred             hcCCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhh--cccC
Q 025775           28 YSHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM--QEKA  103 (248)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~  103 (248)
                      +++++.+||||||++|+++..+...  ....++|+|+.+-.         .   ...+.++++|+.+.......  ....
T Consensus        19 l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~---------~---i~~~~~~~~d~~~~~~~~~~~~~~~~   86 (180)
T d1ej0a_          19 LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD---------P---IVGVDFLQGDFRDELVMKALLERVGD   86 (180)
T ss_dssp             CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC---------C---CTTEEEEESCTTSHHHHHHHHHHHTT
T ss_pred             ccCCCCeEEEEeccCCcceEEEEeeccccceEEEeeccccc---------c---cCCceEeecccccchhhhhhhhhccC
Confidence            3578999999999999999988764  44689999987621         1   12378999999764432211  1135


Q ss_pred             CceeEEEeccchhhh----c---CCHHHHHHHHHHHhccccCCcEEEEEecChh
Q 025775          104 NQADLVCCFQHLQMC----F---ETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (248)
Q Consensus       104 ~~fD~V~~~~~l~~~----~---~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~  150 (248)
                      .++|+|++-++..-.    .   ...+-....+.-+.+.|++||.|++-+.++.
T Consensus        87 ~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~  140 (180)
T d1ej0a_          87 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE  140 (180)
T ss_dssp             CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST
T ss_pred             cceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCc
Confidence            689999998765321    0   1112234667778889999999999866653

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.64  E-value=5.2e-08  Score=79.67  Aligned_cols=115  Identities=17%  Similarity=0.078  Sum_probs=82.0

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcC---CCceEEEEEcCCCCCchhhhhcccCC
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQEKAN  104 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~  104 (248)
                      .+...+||-||.|.|..+..++.. +..+++++||++.+++.|++.+....   ...+++++.+|+..     .+...++
T Consensus        87 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~-----~l~~~~~  161 (295)
T d1inla_          87 HPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAE-----YVRKFKN  161 (295)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHH-----HGGGCSS
T ss_pred             CCCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHH-----HHhcCCC
Confidence            345689999999999988888776 45689999999999999988654311   12458899999733     3344567


Q ss_pred             ceeEEEeccchhhhcCCHH--HHHHHHHHHhccccCCcEEEEEecCh
Q 025775          105 QADLVCCFQHLQMCFETEE--RARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~--~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      +||+|++-..-... ....  -..++++.+++.|+|||+++....+.
T Consensus       162 ~yDvIi~D~~dp~~-~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp  207 (295)
T d1inla_         162 EFDVIIIDSTDPTA-GQGGHLFTEEFYQACYDALKEDGVFSAETEDP  207 (295)
T ss_dssp             CEEEEEEEC-----------CCSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             CCCEEEEcCCCCCc-CchhhhccHHHHHHHHhhcCCCcEEEEecCCh
Confidence            89999875422110 0011  13689999999999999999986553

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.63  E-value=8.8e-08  Score=73.05  Aligned_cols=110  Identities=12%  Similarity=0.067  Sum_probs=76.8

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCC-ceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      .+.+|||+.||||......++++...++.+|.+..+++..++..+..+.. ....+...|+.+  +.. ......+||+|
T Consensus        43 ~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~--~l~-~~~~~~~fDlI  119 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLD--FLK-QPQNQPHFDVV  119 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHH--HTT-SCCSSCCEEEE
T ss_pred             ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccc--ccc-ccccCCcccEE
Confidence            67899999999999999999999999999999999999988877654432 235556665422  110 01124579999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHh--ccccCCcEEEEEecC
Q 025775          110 CCFQHLQMCFETEERARRLLQNVS--SLLKPGGYFLGITPD  148 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~--~~LkpgG~~i~~~~~  148 (248)
                      ++.--..     ......++..+.  ..|+++|++++..+.
T Consensus       120 FlDPPY~-----~~~~~~~l~~l~~~~~L~~~~liiiE~~~  155 (183)
T d2ifta1         120 FLDPPFH-----FNLAEQAISLLCENNWLKPNALIYVETEK  155 (183)
T ss_dssp             EECCCSS-----SCHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred             EechhHh-----hhhHHHHHHHHHHhCCcCCCcEEEEEecC
Confidence            7754222     123445566554  479999999987544

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.62  E-value=2.4e-07  Score=70.39  Aligned_cols=117  Identities=13%  Similarity=0.131  Sum_probs=83.6

Q ss_pred             HHHh-cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc-c
Q 025775           25 IKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-K  102 (248)
Q Consensus        25 i~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~  102 (248)
                      ++.+ ..++..++|.+||.|+++..++..+ ++|+|+|.++.+++.|+.+..     .++.+++.+..+  +...+.. .
T Consensus        11 l~~l~~~~g~~~vD~T~G~GGhs~~iL~~~-~~viaiD~D~~ai~~a~~~~~-----~~~~~~~~~f~~--~~~~l~~~~   82 (182)
T d1wg8a2          11 LDLLAVRPGGVYVDATLGGAGHARGILERG-GRVIGLDQDPEAVARAKGLHL-----PGLTVVQGNFRH--LKRHLAALG   82 (182)
T ss_dssp             HHHHTCCTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHTCC-----TTEEEEESCGGG--HHHHHHHTT
T ss_pred             HHhcCCCCCCEEEEeCCCCcHHHHHHhccc-CcEEEEhhhhhHHHHHhhccc-----cceeEeehHHHH--HHHHHHHcC
Confidence            3433 4589999999999999999998875 499999999999999887532     237888887644  3322221 2


Q ss_pred             CCceeEEEeccch-----hhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          103 ANQADLVCCFQHL-----QMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       103 ~~~fD~V~~~~~l-----~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      .+.+|.|+...++     ...-.........+......|+|||.+++....+
T Consensus        83 ~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs  134 (182)
T d1wg8a2          83 VERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHS  134 (182)
T ss_dssp             CSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSH
T ss_pred             CCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEeccc
Confidence            4679988774432     1111222345678889999999999999886655

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.61  E-value=2.9e-08  Score=77.67  Aligned_cols=110  Identities=17%  Similarity=0.207  Sum_probs=73.1

Q ss_pred             HHHHHh-cCCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhh
Q 025775           23 ALIKIY-SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM   99 (248)
Q Consensus        23 ~li~~~-~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   99 (248)
                      .+++.. .+++.+|||.|||+|.++..+...  ....++|+|+++.++..++          +...+++|.....     
T Consensus        10 ~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~----------~~~~~~~~~~~~~-----   74 (223)
T d2ih2a1          10 FMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP----------WAEGILADFLLWE-----   74 (223)
T ss_dssp             HHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT----------TEEEEESCGGGCC-----
T ss_pred             HHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc----------cceeeeeehhccc-----
Confidence            344443 347889999999999988777654  3347999999998654321          2456777754322     


Q ss_pred             cccCCceeEEEeccchhhhc-------------------------CCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          100 QEKANQADLVCCFQHLQMCF-------------------------ETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       100 ~~~~~~fD~V~~~~~l~~~~-------------------------~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                        ....||+|++........                         ........+++.+.+.|+|||++.+.+|++
T Consensus        75 --~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~  147 (223)
T d2ih2a1          75 --PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT  147 (223)
T ss_dssp             --CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred             --cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeee
Confidence              356899998864321100                         000012467788999999999999887765

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.60  E-value=6.7e-08  Score=79.44  Aligned_cols=116  Identities=10%  Similarity=0.007  Sum_probs=80.2

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcC---CCceEEEEEcCCCCCchhhhhcccCC
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQEKAN  104 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~  104 (248)
                      .+...+||-||-|.|..+..+.+. +..+++++||++.+++.|++.++...   ...+++++.+|...     .+.....
T Consensus       104 ~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~-----~l~~~~~  178 (312)
T d2b2ca1         104 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFE-----FLKNHKN  178 (312)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHH-----HHHHCTT
T ss_pred             CCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHH-----HHHhCCC
Confidence            345678999999999999888876 45799999999999999998654311   12358888888732     2333567


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      +||+|++-..-.......--..++++.+++.|+|||+++....+.
T Consensus       179 ~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~  223 (312)
T d2b2ca1         179 EFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESV  223 (312)
T ss_dssp             CEEEEEECCC-------------HHHHHHHHEEEEEEEEEECCCT
T ss_pred             CCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCCh
Confidence            899998854322110111124788999999999999999985443

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=8.4e-08  Score=78.13  Aligned_cols=114  Identities=11%  Similarity=-0.008  Sum_probs=80.8

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHh---cCCCceEEEEEcCCCCCchhhhhcccCCc
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWEN---QRKNFIAEFFEADPCAENFETQMQEKANQ  105 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~---~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (248)
                      +...+||-||-|.|..+..+.+. +..+++++||++.+++.|++.++.   .-...+++++.+|+..     .+.....+
T Consensus        77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~-----~l~~~~~~  151 (285)
T d2o07a1          77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFE-----FMKQNQDA  151 (285)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHH-----HHHTCSSC
T ss_pred             cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHH-----HHhcCCCC
Confidence            45678999999999999888776 467999999999999999986642   1112468999999733     23334678


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      ||+|++-..-.......-...++++.+++.|+|||+++....+
T Consensus       152 yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s  194 (285)
T d2o07a1         152 FDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC  194 (285)
T ss_dssp             EEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccc
Confidence            9999885422111011112457899999999999999988544

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.57  E-value=1.8e-07  Score=75.76  Aligned_cols=116  Identities=12%  Similarity=0.071  Sum_probs=83.0

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHh---cCCCceEEEEEcCCCCCchhhhhcccCC
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWEN---QRKNFIAEFFEADPCAENFETQMQEKAN  104 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~---~~~~~~~~~~~~d~~~~~~~~~~~~~~~  104 (248)
                      .++..+||-||-|.|..+..+.+. +..+++++||++.+++.|+..++.   .-...+++++.+|+..     .+.....
T Consensus        73 ~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~-----~l~~~~~  147 (274)
T d1iy9a_          73 HPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFM-----HIAKSEN  147 (274)
T ss_dssp             SSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHH-----HHHTCCS
T ss_pred             cCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHH-----HHhhcCC
Confidence            456689999999999988888775 567999999999999999986642   1123468899999733     2333467


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      +||+|++-..-.......--..++++.+.+.|+|||+++....+.
T Consensus       148 ~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~  192 (274)
T d1iy9a_         148 QYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNP  192 (274)
T ss_dssp             CEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             CCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCc
Confidence            899998753211100000014678999999999999999885543

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.53  E-value=4.1e-07  Score=71.98  Aligned_cols=63  Identities=8%  Similarity=-0.000  Sum_probs=53.8

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCch
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF   95 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~   95 (248)
                      ..++.+|||||||+|.++..++..+. +++++|+++.+++..++++....   ++.++++|+.+.++
T Consensus        19 ~~~~d~VlEIGpG~G~LT~~Ll~~~~-~v~avE~D~~l~~~l~~~~~~~~---n~~i~~~D~l~~~~   81 (235)
T d1qama_          19 LNEHDNIFEIGSGKGHFTLELVQRCN-FVTAIEIDHKLCKTTENKLVDHD---NFQVLNKDILQFKF   81 (235)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHHHHHHHHTTTCC---SEEEECCCGGGCCC
T ss_pred             CCCCCeEEEECCCchHHHHHHHhCcC-ceEEEeeccchHHHHHHHhhccc---chhhhhhhhhhccc
Confidence            45899999999999999999988754 89999999999999998876543   48999999976554

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.53  E-value=3e-07  Score=74.97  Aligned_cols=115  Identities=13%  Similarity=0.071  Sum_probs=81.8

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhc---CCCceEEEEEcCCCCCchhhhhcc-cCC
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ---RKNFIAEFFEADPCAENFETQMQE-KAN  104 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~---~~~~~~~~~~~d~~~~~~~~~~~~-~~~  104 (248)
                      +...+||=||-|.|..+..+... +..+++++||++.+++.|++.+...   ....+++.+.+|...     .+.. ..+
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~-----~l~~~~~~  153 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVA-----FLKNAAEG  153 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHH-----HHHTSCTT
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHH-----HHhhcccc
Confidence            45679999999999999888776 5568999999999999998865321   123458899998733     2221 346


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      +||+|++...-.......--..++++.+++.|+|||+++....+.
T Consensus       154 ~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~  198 (290)
T d1xj5a_         154 SYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESL  198 (290)
T ss_dssp             CEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             CccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCc
Confidence            899998743211100001114679999999999999999986554

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.48  E-value=3e-08  Score=79.09  Aligned_cols=93  Identities=12%  Similarity=0.071  Sum_probs=67.3

Q ss_pred             HHHHh-cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhccc
Q 025775           24 LIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (248)
Q Consensus        24 li~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  102 (248)
                      +++.. ..++.+|||||||+|.++..++..+. +++++|+++.+++.+++++...   .++.++++|+.+.++      +
T Consensus        21 Iv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~-~v~aIE~D~~l~~~l~~~~~~~---~n~~ii~~D~l~~~~------~   90 (245)
T d1yuba_          21 IIKQLNLKETDTVYEIGTGKGHLTTKLAKISK-QVTSIELDSHLFNLSSEKLKLN---TRVTLIHQDILQFQF------P   90 (245)
T ss_dssp             HHHHCCCCSSEEEEECSCCCSSCSHHHHHHSS-EEEESSSSCSSSSSSSCTTTTC---SEEEECCSCCTTTTC------C
T ss_pred             HHHhcCCCCCCeEEEECCCccHHHHHHHhhcC-ceeEeeecccchhhhhhhhhhc---cchhhhhhhhhcccc------c
Confidence            44443 45788999999999999999988765 9999999999998887776543   258999999987665      3


Q ss_pred             CCceeEEEeccchhhhcCCHHHHHHHH
Q 025775          103 ANQADLVCCFQHLQMCFETEERARRLL  129 (248)
Q Consensus       103 ~~~fD~V~~~~~l~~~~~~~~~~~~~l  129 (248)
                      ...++.|+++.-.|   .+.+-+..++
T Consensus        91 ~~~~~~vv~NLPY~---Ist~il~~~l  114 (245)
T d1yuba_          91 NKQRYKIVGNIPYH---LSTQIIKKVV  114 (245)
T ss_dssp             CSSEEEEEEECCSS---SCHHHHHHHH
T ss_pred             cceeeeEeeeeehh---hhHHHHHHHh
Confidence            45566665544333   2344444444

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.33  E-value=9.9e-06  Score=62.44  Aligned_cols=107  Identities=12%  Similarity=0.017  Sum_probs=78.1

Q ss_pred             HHHHHHhcCCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhc
Q 025775           22 TALIKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ  100 (248)
Q Consensus        22 ~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  100 (248)
                      +..+-.++ ++.+|+|+|||.|--...++-. +-.+++.+|.+..-+...+.-....+. .+++.++..+.+..      
T Consensus        57 Sl~~~~~~-~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L-~nv~v~~~R~E~~~------  128 (207)
T d1jsxa_          57 SIVVAPYL-QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL-ENIEPVQSRVEEFP------  128 (207)
T ss_dssp             HHHHGGGC-CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC-SSEEEEECCTTTSC------
T ss_pred             hHhhhhhh-cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCC-cceeeeccchhhhc------
Confidence            33344444 4679999999999887777654 445999999999887776665555442 24888888876533      


Q ss_pred             ccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       101 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                       ...+||+|+|-...        .+..+++-+...+++||.+++.
T Consensus       129 -~~~~fD~V~sRA~~--------~~~~ll~~~~~~l~~~g~~~~~  164 (207)
T d1jsxa_         129 -SEPPFDGVISRAFA--------SLNDMVSWCHHLPGEQGRFYAL  164 (207)
T ss_dssp             -CCSCEEEEECSCSS--------SHHHHHHHHTTSEEEEEEEEEE
T ss_pred             -cccccceehhhhhc--------CHHHHHHHHHHhcCCCcEEEEE
Confidence             25689999886521        2567888899999999999887

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.32  E-value=9.3e-07  Score=69.62  Aligned_cols=108  Identities=15%  Similarity=0.095  Sum_probs=69.8

Q ss_pred             HHHHHHhcCCCCeEEEEcCCCCccHhHHHHc-----CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh
Q 025775           22 TALIKIYSHPYVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE   96 (248)
Q Consensus        22 ~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~-----~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   96 (248)
                      +.||...  ++.+|||||++.|+.+..++..     ..++++|+|+++.....+..      ...++.++++|..+....
T Consensus        73 ~eli~~~--KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~------~~~~I~~i~gDs~~~~~~  144 (232)
T d2bm8a1          73 HDMLWEL--RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS------DMENITLHQGDCSDLTTF  144 (232)
T ss_dssp             HHHHHHH--CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG------GCTTEEEEECCSSCSGGG
T ss_pred             HHHHHHh--CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc------cccceeeeecccccHHHH
Confidence            4444444  4578999999999877666532     34699999998765432211      113489999998776554


Q ss_pred             hhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775           97 TQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus        97 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      ..+  ....+|+|+.-.. |.   .......+  +....|++||++++.
T Consensus       145 ~~l--~~~~~dlIfID~~-H~---~~~v~~~~--~~~~lLk~GG~iIve  185 (232)
T d2bm8a1         145 EHL--REMAHPLIFIDNA-HA---NTFNIMKW--AVDHLLEEGDYFIIE  185 (232)
T ss_dssp             GGG--SSSCSSEEEEESS-CS---SHHHHHHH--HHHHTCCTTCEEEEC
T ss_pred             HHH--HhcCCCEEEEcCC-cc---hHHHHHHH--HHhcccCcCCEEEEE
Confidence            444  3446788876554 43   23333333  356799999999886

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=1.3e-05  Score=64.58  Aligned_cols=71  Identities=11%  Similarity=0.059  Sum_probs=57.7

Q ss_pred             HHHHh-cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCch
Q 025775           24 LIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF   95 (248)
Q Consensus        24 li~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~   95 (248)
                      +++.. ..++..|||||+|+|.++..++..+. +++++++++.+++..++++.......++.++.+|+...++
T Consensus        13 Iv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~-~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~   84 (278)
T d1zq9a1          13 IIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL   84 (278)
T ss_dssp             HHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC
T ss_pred             HHHHhCCCCCCEEEEECCCchHHHHHHHhcCC-cEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhh
Confidence            34443 44789999999999999999988764 9999999999999999887664433468999999977554

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.24  E-value=2e-06  Score=72.41  Aligned_cols=109  Identities=10%  Similarity=-0.011  Sum_probs=76.7

Q ss_pred             CCCeEEEEcCCCCccHhHHHH-cCCCeEEEEeCChHHHHHHHHHHHhcCCC--------------ceEEEEEcCCCCCch
Q 025775           31 PYVTVCDLYCGAGVDVDKWET-ALIANYIGIDVATSGIGEARDTWENQRKN--------------FIAEFFEADPCAENF   95 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~-~~~~~v~giDis~~~l~~a~~~~~~~~~~--------------~~~~~~~~d~~~~~~   95 (248)
                      ++.+|||..||+|..+..++. .+...|++.|+|+.+++.+++...-++..              ..+...+.|+..   
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~---  121 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANR---  121 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHH---
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhh---
Confidence            568999999999998887765 46679999999999999999877554321              124555565422   


Q ss_pred             hhhhcccCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHH
Q 025775           96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (248)
Q Consensus        96 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~  152 (248)
                        .+......||+|.+--        -.....++..+.+.++.||++.+|.-|...+
T Consensus       122 --~~~~~~~~fDvIDiDP--------fGs~~pfldsAi~a~~~~Gll~vTaTD~a~L  168 (375)
T d2dula1         122 --LMAERHRYFHFIDLDP--------FGSPMEFLDTALRSAKRRGILGVTATDGAPL  168 (375)
T ss_dssp             --HHHHSTTCEEEEEECC--------SSCCHHHHHHHHHHEEEEEEEEEEECCHHHH
T ss_pred             --hhHhhcCcCCcccCCC--------CCCcHHHHHHHHHHhccCCEEEEEecCchhh
Confidence              2222456799996643        1123346777777889999999996666444

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.19  E-value=1.8e-06  Score=68.76  Aligned_cols=82  Identities=7%  Similarity=0.005  Sum_probs=59.3

Q ss_pred             HHHHh-cCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhccc
Q 025775           24 LIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (248)
Q Consensus        24 li~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  102 (248)
                      +++.. ..++..|||||||+|.++..++..+. +|+++|+++.+++..+.+....   .++.++++|+...++.+.....
T Consensus        13 Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~---~~~~ii~~D~l~~~~~~~~~~~   88 (252)
T d1qyra_          13 IVSAINPQKGQAMVEIGPGLAALTEPVGERLD-QLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTFNFGELAEKM   88 (252)
T ss_dssp             HHHHHCCCTTCCEEEECCTTTTTHHHHHTTCS-CEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGCCHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEECCCchHHHHHHHccCC-ceEEEEeccchhHHHHHHhhhc---cchhHHhhhhhhhccccccccc
Confidence            34444 45788999999999999999987654 8999999999999887755332   2489999999776654332222


Q ss_pred             CCceeEE
Q 025775          103 ANQADLV  109 (248)
Q Consensus       103 ~~~fD~V  109 (248)
                      ..++-+|
T Consensus        89 ~~~~~vv   95 (252)
T d1qyra_          89 GQPLRVF   95 (252)
T ss_dssp             TSCEEEE
T ss_pred             CCCeEEE
Confidence            3445444

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.14  E-value=1.2e-05  Score=67.21  Aligned_cols=115  Identities=17%  Similarity=0.133  Sum_probs=77.7

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      .++.+|||+.||.|.++..++.. .++|+|+|+++.+++.|++....++. .++.|+.+|+.+.-.  .......++|+|
T Consensus       211 ~~~~~vlDLycG~G~fsl~La~~-~~~V~gvE~~~~ai~~A~~na~~n~i-~n~~~~~~~~~~~~~--~~~~~~~~~d~v  286 (358)
T d1uwva2         211 QPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGL-QNVTFYHENLEEDVT--KQPWAKNGFDKV  286 (358)
T ss_dssp             CTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCTTSCCS--SSGGGTTCCSEE
T ss_pred             CCCceEEEecccccccchhcccc-ccEEEeccCcHHHHHHHHHhHHhccc-ccceeeecchhhhhh--hhhhhhccCceE
Confidence            36789999999999999988654 45999999999999999988766553 358899998865221  111135679999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHH
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ  157 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~  157 (248)
                      +..--=..       +.+.+..+.+. +|.-+++++ .|...+.+.+.
T Consensus       287 ilDPPR~G-------~~~~~~~l~~~-~~~~ivYVS-Cnp~TlaRDl~  325 (358)
T d1uwva2         287 LLDPARAG-------AAGVMQQIIKL-EPIRIVYVS-CNPATLARDSE  325 (358)
T ss_dssp             EECCCTTC-------CHHHHHHHHHH-CCSEEEEEE-SCHHHHHHHHH
T ss_pred             EeCCCCcc-------HHHHHHHHHHc-CCCEEEEEe-CCHHHHHHHHH
Confidence            76431111       22345555443 666666665 46666655554

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.11  E-value=6.9e-06  Score=70.35  Aligned_cols=121  Identities=19%  Similarity=0.157  Sum_probs=80.1

Q ss_pred             HHHHHHhcC-CCCeEEEEcCCCCccHhHHHHc----C----------CCeEEEEeCChHHHHHHHHHHHhcCCC-ceEEE
Q 025775           22 TALIKIYSH-PYVTVCDLYCGAGVDVDKWETA----L----------IANYIGIDVATSGIGEARDTWENQRKN-FIAEF   85 (248)
Q Consensus        22 ~~li~~~~~-~~~~VLDlGcG~G~~~~~l~~~----~----------~~~v~giDis~~~l~~a~~~~~~~~~~-~~~~~   85 (248)
                      ..+++...+ ++.+|+|.+||+|+++......    .          ...+.|+|+++.+...|+....-++.. ....+
T Consensus       152 ~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i  231 (425)
T d2okca1         152 QAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPI  231 (425)
T ss_dssp             HHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSE
T ss_pred             HhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCcccccee
Confidence            334444433 6789999999999998766542    1          125999999999999888765443321 12446


Q ss_pred             EEcCCCCCchhhhhcccCCceeEEEeccchhhh-------------cCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775           86 FEADPCAENFETQMQEKANQADLVCCFQHLQMC-------------FETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus        86 ~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~-------------~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      ...|.....       ...+||+|+++--...-             ......-..+++.+.+.|++||.+.+.+|++
T Consensus       232 ~~~d~l~~~-------~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~  301 (425)
T d2okca1         232 VCEDSLEKE-------PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDN  301 (425)
T ss_dssp             EECCTTTSC-------CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             ecCchhhhh-------cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechH
Confidence            667764432       35689999986433210             0111123458999999999999999887765

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=98.09  E-value=3.3e-06  Score=66.34  Aligned_cols=121  Identities=17%  Similarity=0.094  Sum_probs=71.3

Q ss_pred             hcCCCCeEEEEcCCCCccHhHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCC-ceEEEEEcCCCCCchhhhhcccCCc
Q 025775           28 YSHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKANQ  105 (248)
Q Consensus        28 ~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~v~giDis~~~l~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~  105 (248)
                      ++.|+.+|+|||||+|+++..++... ...+.|+|+--.--+  ... ...... .-+.+...+... .+      .++.
T Consensus        63 ~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e--~P~-~~~~~~~ni~~~~~~~dv~-~l------~~~~  132 (257)
T d2p41a1          63 LVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHE--EPI-PMSTYGWNLVRLQSGVDVF-FI------PPER  132 (257)
T ss_dssp             SSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSC--CCC-CCCSTTGGGEEEECSCCTT-TS------CCCC
T ss_pred             CccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcccc--CCc-cccccccccccchhhhhHH-hc------CCCc
Confidence            46788899999999999999887663 347888887422100  000 000000 013444333211 11      3678


Q ss_pred             eeEEEeccchhhhcCCH--HHHHHHHHHHhccccCCcEEEEEecC--hhHHHHHHHH
Q 025775          106 ADLVCCFQHLQMCFETE--ERARRLLQNVSSLLKPGGYFLGITPD--SSTIWAKYQK  158 (248)
Q Consensus       106 fD~V~~~~~l~~~~~~~--~~~~~~l~~~~~~LkpgG~~i~~~~~--~~~~~~~~~~  158 (248)
                      .|+|+|-.+-...-...  ...-.+++-+.+.|+|||.|++-+.+  ...+.+++..
T Consensus       133 ~D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~~~v~e~le~  189 (257)
T d2p41a1         133 CDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEA  189 (257)
T ss_dssp             CSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHH
T ss_pred             CCEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCChHHHHHHHH
Confidence            99999987543110011  12336778888999999999988666  4555655543

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.06  E-value=1.2e-05  Score=65.96  Aligned_cols=111  Identities=18%  Similarity=0.112  Sum_probs=75.4

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      .+|.+|||++||.|+=+..++..  +.+.+++.|+++.-+...+.+....+. .++.....|....+.      ....||
T Consensus       115 ~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~-~~i~~~~~d~~~~~~------~~~~fD  187 (313)
T d1ixka_         115 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV-LNVILFHSSSLHIGE------LNVEFD  187 (313)
T ss_dssp             CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC-CSEEEESSCGGGGGG------GCCCEE
T ss_pred             CccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHh-hcccccccccccccc------cccccc
Confidence            48999999999999877767654  445899999999999888877766543 235556666533222      367899


Q ss_pred             EEEecc------chhhh-----cCCH-------HHHHHHHHHHhccccCCcEEEEEec
Q 025775          108 LVCCFQ------HLQMC-----FETE-------ERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       108 ~V~~~~------~l~~~-----~~~~-------~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      .|.+-.      .++.-     -.+.       ....+++.+..+.|||||+++-++.
T Consensus       188 ~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTC  245 (313)
T d1ixka_         188 KILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC  245 (313)
T ss_dssp             EEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             EEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeec
Confidence            997732      11100     0112       2235788899999999998877643

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.95  E-value=3.2e-05  Score=62.50  Aligned_cols=112  Identities=14%  Similarity=0.093  Sum_probs=74.4

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeE
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~  108 (248)
                      .++.+|||+++|.|+=+..++.. ..+.++++|+++.-+...+.+....+..  ....+.+......  ..  ..+.||.
T Consensus       101 ~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~--~~~~~~~~~~~~~--~~--~~~~fd~  174 (284)
T d1sqga2         101 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK--ATVKQGDGRYPSQ--WC--GEQQFDR  174 (284)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC--CEEEECCTTCTHH--HH--TTCCEEE
T ss_pred             cccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccccc--ceeeeccccccch--hc--ccccccE
Confidence            48899999999999988777765 3368999999999999888887766532  2333333222111  11  3568999


Q ss_pred             EEecc------chhh------hcCC------HHHHHHHHHHHhccccCCcEEEEEec
Q 025775          109 VCCFQ------HLQM------CFET------EERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       109 V~~~~------~l~~------~~~~------~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      |.+-.      .+..      .+..      ..-..+++.++.+.|+|||+++-++.
T Consensus       175 IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTC  231 (284)
T d1sqga2         175 ILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC  231 (284)
T ss_dssp             EEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred             EEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeee
Confidence            97632      1210      0110      12246789999999999999887743

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=97.85  E-value=2.8e-05  Score=68.26  Aligned_cols=122  Identities=16%  Similarity=0.153  Sum_probs=75.5

Q ss_pred             HHHHHhcC-CCCeEEEEcCCCCccHhHHHHc----C---------------CCeEEEEeCChHHHHHHHHHHHhcCCC--
Q 025775           23 ALIKIYSH-PYVTVCDLYCGAGVDVDKWETA----L---------------IANYIGIDVATSGIGEARDTWENQRKN--   80 (248)
Q Consensus        23 ~li~~~~~-~~~~VLDlGcG~G~~~~~l~~~----~---------------~~~v~giDis~~~l~~a~~~~~~~~~~--   80 (248)
                      .++....+ ++.+|+|.+||+|+++......    .               ...+.|+|+++.+...|+...--++..  
T Consensus       155 ~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~  234 (524)
T d2ar0a1         155 TIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN  234 (524)
T ss_dssp             HHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCB
T ss_pred             hhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhccccc
Confidence            34443333 6779999999999998665431    0               125899999999998887655433211  


Q ss_pred             --ceEEEEEcCCCCCchhhhhcccCCceeEEEeccchhhh----------cCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775           81 --FIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMC----------FETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus        81 --~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~----------~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                        ....+...+....+..     ...+||+|+++--+...          ......--.+++.+.+.|+|||++.+.+|+
T Consensus       235 i~~~~~~~~~~~l~~d~~-----~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~  309 (524)
T d2ar0a1         235 LDHGGAIRLGNTLGSDGE-----NLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPD  309 (524)
T ss_dssp             GGGTBSEEESCTTSHHHH-----TSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             ccccchhhhhhhhhhccc-----ccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEeh
Confidence              0122344444332221     34689999986422110          001111235899999999999999999776


Q ss_pred             h
Q 025775          149 S  149 (248)
Q Consensus       149 ~  149 (248)
                      +
T Consensus       310 ~  310 (524)
T d2ar0a1         310 N  310 (524)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.73  E-value=0.00016  Score=56.67  Aligned_cols=103  Identities=17%  Similarity=0.124  Sum_probs=70.7

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      +..+|+|+|+|.|--...++-. +..+++.+|.+..-+...+.-....+. .++..++..+.....   ..+...+||+|
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L-~n~~i~~~R~E~~~~---~~~~~~~~D~v  145 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL-ENTTFCHDRAETFGQ---RKDVRESYDIV  145 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC-SSEEEEESCHHHHTT---CTTTTTCEEEE
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCC-CCcEEEeehhhhccc---cccccccceEE
Confidence            5679999999999877777643 556999999998866655544443332 136666665522110   00124689999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      ++-...        .+..+++-+...+++||.+++.
T Consensus       146 ~sRAva--------~l~~ll~~~~~~l~~~g~~i~~  173 (239)
T d1xdza_         146 TARAVA--------RLSVLSELCLPLVKKNGLFVAL  173 (239)
T ss_dssp             EEECCS--------CHHHHHHHHGGGEEEEEEEEEE
T ss_pred             EEhhhh--------CHHHHHHHHhhhcccCCEEEEE
Confidence            886522        2677889999999999999887

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=0.00056  Score=55.15  Aligned_cols=79  Identities=11%  Similarity=0.061  Sum_probs=57.3

Q ss_pred             CCCCeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        30 ~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      .++.+|||++||.|+-+..++..  +.+.++++|+++.-++..++.....+. ..+.+...|........   ...+.||
T Consensus        93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~-~~~~~~~~d~~~~~~~~---~~~~~fD  168 (293)
T d2b9ea1          93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV-SCCELAEEDFLAVSPSD---PRYHEVH  168 (293)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCGGGSCTTC---GGGTTEE
T ss_pred             CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCc-cceeeeehhhhhhcccc---cccceee
Confidence            47899999999999977777654  456899999999999888887776553 23677788765432210   0135799


Q ss_pred             EEEec
Q 025775          108 LVCCF  112 (248)
Q Consensus       108 ~V~~~  112 (248)
                      .|++.
T Consensus       169 ~VL~D  173 (293)
T d2b9ea1         169 YILLD  173 (293)
T ss_dssp             EEEEC
T ss_pred             EEeec
Confidence            99774

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=97.07  E-value=0.00069  Score=52.85  Aligned_cols=55  Identities=22%  Similarity=0.260  Sum_probs=46.2

Q ss_pred             HHHHHHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHH
Q 025775           20 AKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWE   75 (248)
Q Consensus        20 ~~~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~   75 (248)
                      +-..+|+.+..+|..|||.-||+|..+......+ .+.+|+|++++.++.|++|++
T Consensus       201 L~~~lI~~~s~~gd~VlDpF~GSGTT~~aa~~~~-R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         201 LIERIIRASSNPNDLVLDCFMGSGTTAIVAKKLG-RNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             HHHHHHHHHCCTTCEEEESSCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCEEEECCCCchHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHHc
Confidence            3445778888899999999999998776665555 499999999999999999875

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=96.95  E-value=0.0023  Score=52.78  Aligned_cols=46  Identities=15%  Similarity=0.138  Sum_probs=37.0

Q ss_pred             cCCceeEEEeccchhhhcC------------------C-----------HHHHHHHHHHHhccccCCcEEEEEec
Q 025775          102 KANQADLVCCFQHLQMCFE------------------T-----------EERARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       102 ~~~~fD~V~~~~~l~~~~~------------------~-----------~~~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      +.++.|+++|..++||+=.                  +           ..++..+|+.=.+-|+|||.+++++.
T Consensus       136 P~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~  210 (359)
T d1m6ex_         136 PRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL  210 (359)
T ss_dssp             CTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred             CCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEe
Confidence            5788999999999998511                  0           24677899999999999999999854

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.92  E-value=0.00077  Score=55.08  Aligned_cols=59  Identities=19%  Similarity=0.220  Sum_probs=49.2

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCC
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE   93 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~   93 (248)
                      .+..|||||+|.|.++..+... .+.+++++++++..++..+.++...    ++.++++|+...
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~~----~~~ii~~D~l~~  102 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGS----PLQILKRDPYDW  102 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTS----SCEEECSCTTCH
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccCC----CcEEEeCchhhc
Confidence            4678999999999999998865 5669999999999999888876543    378899998653

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=96.92  E-value=0.00066  Score=54.67  Aligned_cols=55  Identities=13%  Similarity=0.196  Sum_probs=46.1

Q ss_pred             HHHHHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHh
Q 025775           21 KTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN   76 (248)
Q Consensus        21 ~~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~   76 (248)
                      -..+|..+.+++..|||.-||+|..+......+- +.+|+|++++.++.|++|+..
T Consensus       240 ~~rlI~~~s~~gdiVlDpF~GSGTT~~AA~~lgR-~~Ig~El~~~y~~~a~~Rl~~  294 (320)
T d1booa_         240 PEFFIRMLTEPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLD  294 (320)
T ss_dssp             HHHHHHHHCCTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSC
T ss_pred             HHHhhhhcccCCCEEEecCCCCcHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHHHh
Confidence            3456777888999999999999987766655554 999999999999999988654

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.76  E-value=0.0015  Score=51.47  Aligned_cols=57  Identities=25%  Similarity=0.175  Sum_probs=48.0

Q ss_pred             HHHHHHHHhcCCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhc
Q 025775           20 AKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ   77 (248)
Q Consensus        20 ~~~~li~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~   77 (248)
                      +-..+|..+..+|..|||.-||+|..+......+- +.+|+|+++...+.|++|+...
T Consensus       196 L~~~~I~~~s~~gdiVLDpF~GSGTT~~Aa~~lgR-~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         196 VIERLVRALSHPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             HHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC
T ss_pred             HHHHHHHhhcCCCCEEEecCCCCcHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHh
Confidence            34457788889999999999999987766655565 9999999999999999998753

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.75  E-value=0.0062  Score=44.32  Aligned_cols=101  Identities=12%  Similarity=0.081  Sum_probs=63.6

Q ss_pred             hcCCCCeEEEEcCCC-CccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh---hhhcc-c
Q 025775           28 YSHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE---TQMQE-K  102 (248)
Q Consensus        28 ~~~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~~-~  102 (248)
                      -..++.+||=+|||. |..+..++.....+++++|.++.-++.|++....      . .+..+....+..   ..+.+ .
T Consensus        23 ~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~------~-~~~~~~~~~~~~~~~~~~~~~~   95 (170)
T d1e3ja2          23 GVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGAD------V-TLVVDPAKEEESSIIERIRSAI   95 (170)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS------E-EEECCTTTSCHHHHHHHHHHHS
T ss_pred             CCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCc------E-EEeccccccccchhhhhhhccc
Confidence            356899999999995 5555555555445999999999999888764221      2 233333222221   11111 2


Q ss_pred             CCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       103 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      ...+|+|+-.-.      .    ...++...+.++|+|.+++.
T Consensus        96 g~g~D~vid~~g------~----~~~~~~a~~~~~~~G~iv~~  128 (170)
T d1e3ja2          96 GDLPNVTIDCSG------N----EKCITIGINITRTGGTLMLV  128 (170)
T ss_dssp             SSCCSEEEECSC------C----HHHHHHHHHHSCTTCEEEEC
T ss_pred             ccCCceeeecCC------C----hHHHHHHHHHHhcCCceEEE
Confidence            456898865332      1    23566677899999999876

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.64  E-value=0.0019  Score=47.75  Aligned_cols=99  Identities=17%  Similarity=0.111  Sum_probs=63.7

Q ss_pred             hcCCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc--cC
Q 025775           28 YSHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KA  103 (248)
Q Consensus        28 ~~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~  103 (248)
                      -+.|+.+||=+|||. |..+..+++. +..+|+++|.++.-++.|++.-.       ..++  |..+.+..+.+.+  ..
T Consensus        24 ~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa-------~~~i--~~~~~~~~~~v~~~t~g   94 (174)
T d1jqba2          24 DIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGA-------TDIL--NYKNGHIEDQVMKLTNG   94 (174)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTC-------SEEE--CGGGSCHHHHHHHHTTT
T ss_pred             CCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCc-------cccc--cccchhHHHHHHHHhhc
Confidence            356899999999997 6666667665 55589999999998888875321       1222  2222233222221  13


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      ..+|+|+-.-..          ...+++..+.++|+|.+++.
T Consensus        95 ~G~D~vid~~g~----------~~~~~~a~~~~~~~G~iv~~  126 (174)
T d1jqba2          95 KGVDRVIMAGGG----------SETLSQAVKMVKPGGIISNI  126 (174)
T ss_dssp             SCEEEEEECSSC----------TTHHHHHHHHEEEEEEEEEC
T ss_pred             cCcceEEEccCC----------HHHHHHHHHHHhcCCEEEEE
Confidence            459998654321          12456677889999999886

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.62  E-value=0.0023  Score=47.38  Aligned_cols=98  Identities=19%  Similarity=0.118  Sum_probs=61.4

Q ss_pred             cCCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh---hcc--
Q 025775           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ---MQE--  101 (248)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~--  101 (248)
                      ..+|.+||-+|||. |..+..++.. +..+|+++|.+++-++.+++.-.       ...+  |..+.+..+.   +.+  
T Consensus        26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa-------~~vi--~~~~~~~~~~~~~i~~~~   96 (182)
T d1vj0a2          26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA-------DLTL--NRRETSVEERRKAIMDIT   96 (182)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC-------SEEE--ETTTSCHHHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCccchhheecccccccccccccccccccccccccccc-------eEEE--eccccchHHHHHHHHHhh
Confidence            35899999999985 6555666555 55689999999999988865311       1122  2222222111   111  


Q ss_pred             cCCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       102 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      ....+|+|+..-..          ...++...+.|++||.+++.
T Consensus        97 ~~~g~Dvvid~vG~----------~~~~~~a~~~l~~~G~iv~~  130 (182)
T d1vj0a2          97 HGRGADFILEATGD----------SRALLEGSELLRRGGFYSVA  130 (182)
T ss_dssp             TTSCEEEEEECSSC----------TTHHHHHHHHEEEEEEEEEC
T ss_pred             CCCCceEEeecCCc----------hhHHHHHHHHhcCCCEEEEE
Confidence            23469998653311          12456677899999998765

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.52  E-value=0.0018  Score=48.87  Aligned_cols=108  Identities=14%  Similarity=-0.002  Sum_probs=67.3

Q ss_pred             hcCCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc--cC
Q 025775           28 YSHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KA  103 (248)
Q Consensus        28 ~~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~  103 (248)
                      -++++.+||-+|||. |..+..++.. +...++++|.++.-++.|++.-        +... .+-.+.++.+.+.+  ..
T Consensus        22 ~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~G--------a~~~-~~~~~~~~~~~i~~~t~g   92 (195)
T d1kola2          22 GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQG--------FEIA-DLSLDTPLHEQIAALLGE   92 (195)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTT--------CEEE-ETTSSSCHHHHHHHHHSS
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhcc--------ccEE-EeCCCcCHHHHHHHHhCC
Confidence            466999999999998 4444555543 6669999999999998887542        2222 23333344322211  24


Q ss_pred             CceeEEEeccc------hhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          104 NQADLVCCFQH------LQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       104 ~~fD~V~~~~~------l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      ..+|+++-.-.      .++... .....+.++.+.+.++|||.+++.
T Consensus        93 ~g~D~vid~vG~~~~~~~~~~~~-~~~~~~~l~~~~~~~r~gG~v~~~  139 (195)
T d1kola2          93 PEVDCAVDAVGFEARGHGHEGAK-HEAPATVLNSLMQVTRVAGKIGIP  139 (195)
T ss_dssp             SCEEEEEECCCTTCBCSSTTGGG-SBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred             CCcEEEEECccccccCCccccee-ecCcHHHHHHHHHHHhcCCEEEEe
Confidence            56898875322      111111 011245788888999999999877

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=96.45  E-value=0.0023  Score=50.02  Aligned_cols=77  Identities=9%  Similarity=-0.043  Sum_probs=54.0

Q ss_pred             CeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHH---HHHHhcC-----CCceEEEEEcCCCCCchhhhhcccCC
Q 025775           33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEAR---DTWENQR-----KNFIAEFFEADPCAENFETQMQEKAN  104 (248)
Q Consensus        33 ~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~---~~~~~~~-----~~~~~~~~~~d~~~~~~~~~~~~~~~  104 (248)
                      .+|||+.||.|.++..++..+. +|++++-++......+   +++....     ...+++++++|..+  +   +.....
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~G~-~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~--~---L~~~~~  163 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT--A---LTDITP  163 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHH--H---STTCSS
T ss_pred             CEEEECCCcccHHHHHHHhCCC-EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHH--H---HhccCC
Confidence            4899999999999999988876 8999999998654433   3333211     01258999999632  1   222356


Q ss_pred             ceeEEEeccch
Q 025775          105 QADLVCCFQHL  115 (248)
Q Consensus       105 ~fD~V~~~~~l  115 (248)
                      +||+|+.--.+
T Consensus       164 ~~DvIYlDPMF  174 (250)
T d2oyra1         164 RPQVVYLDPMF  174 (250)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999886644

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.0034  Score=45.93  Aligned_cols=101  Identities=9%  Similarity=-0.009  Sum_probs=62.0

Q ss_pred             hcCCCCeEEEEcCCCCc-cHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCc-hhhhhc-ccC
Q 025775           28 YSHPYVTVCDLYCGAGV-DVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN-FETQMQ-EKA  103 (248)
Q Consensus        28 ~~~~~~~VLDlGcG~G~-~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~-~~~  103 (248)
                      -..++.+||=+|||..+ .+..++.. +..+++++|.++.-++.|++.-..       .....+-.+.. ...... ...
T Consensus        23 ~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~-------~~~~~~~~~~~~~~~~~~~~~g   95 (171)
T d1pl8a2          23 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGAD-------LVLQISKESPQEIARKVEGQLG   95 (171)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCS-------EEEECSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCc-------ccccccccccccccccccccCC
Confidence            35689999999999744 33444444 556899999999999888753111       12222211110 111111 124


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      ..+|+|+..-..          ...++...+.+++||.+++.
T Consensus        96 ~g~Dvvid~~G~----------~~~~~~a~~~~~~gG~iv~~  127 (171)
T d1pl8a2          96 CKPEVTIECTGA----------EASIQAGIYATRSGGTLVLV  127 (171)
T ss_dssp             SCCSEEEECSCC----------HHHHHHHHHHSCTTCEEEEC
T ss_pred             CCceEEEeccCC----------chhHHHHHHHhcCCCEEEEE
Confidence            578998664421          23577778899999999886

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.27  E-value=0.0084  Score=43.93  Aligned_cols=98  Identities=11%  Similarity=0.067  Sum_probs=62.8

Q ss_pred             cCCCCeEEEEcCCCC-ccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc-cCCc
Q 025775           29 SHPYVTVCDLYCGAG-VDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ  105 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G-~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~  105 (248)
                      .+|+.+||=+|||.- ..+..++.. +...++.+|.++.-++.+++.-.       .+++..+  +.+..+.+.+ .++.
T Consensus        26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga-------~~~i~~~--~~~~~~~i~~~t~gg   96 (174)
T d1f8fa2          26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGA-------THVINSK--TQDPVAAIKEITDGG   96 (174)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTC-------SEEEETT--TSCHHHHHHHHTTSC
T ss_pred             CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCC-------eEEEeCC--CcCHHHHHHHHcCCC
Confidence            568999999999863 333444433 67688999999998888875421       2334332  3333332221 3467


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +|+|+-.-.          ....++.+.+.++|+|.+++.
T Consensus        97 ~D~vid~~G----------~~~~~~~~~~~~~~~G~i~~~  126 (174)
T d1f8fa2          97 VNFALESTG----------SPEILKQGVDALGILGKIAVV  126 (174)
T ss_dssp             EEEEEECSC----------CHHHHHHHHHTEEEEEEEEEC
T ss_pred             CcEEEEcCC----------cHHHHHHHHhcccCceEEEEE
Confidence            999864331          123566778899999999875

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.26  E-value=0.0034  Score=45.89  Aligned_cols=100  Identities=13%  Similarity=0.042  Sum_probs=61.7

Q ss_pred             HHhcCCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccC
Q 025775           26 KIYSHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA  103 (248)
Q Consensus        26 ~~~~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  103 (248)
                      ..-+.|+.+||-+|+|. |..+..+++. +. +++++|.+++-++.|++.-..       .++... .+....+.   ..
T Consensus        22 ~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~lGa~-------~~i~~~-~~~~~~~~---~~   89 (168)
T d1piwa2          22 RNGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKMGAD-------HYIATL-EEGDWGEK---YF   89 (168)
T ss_dssp             HTTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCS-------EEEEGG-GTSCHHHH---SC
T ss_pred             HhCcCCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhccCCc-------EEeecc-chHHHHHh---hh
Confidence            33467999999999984 6555666554 54 899999999999888764211       122211 11112111   35


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       104 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +.+|+|+..-....        ...+....+.|+|+|.+++.
T Consensus        90 ~~~d~vi~~~~~~~--------~~~~~~~~~~l~~~G~iv~~  123 (168)
T d1piwa2          90 DTFDLIVVCASSLT--------DIDFNIMPKAMKVGGRIVSI  123 (168)
T ss_dssp             SCEEEEEECCSCST--------TCCTTTGGGGEEEEEEEEEC
T ss_pred             cccceEEEEecCCc--------cchHHHHHHHhhccceEEEe
Confidence            67998765322111        00134567899999999875

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.0088  Score=43.72  Aligned_cols=97  Identities=16%  Similarity=0.153  Sum_probs=62.3

Q ss_pred             cCCCCeEEEEcC-C-CCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc--cCC
Q 025775           29 SHPYVTVCDLYC-G-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (248)
Q Consensus        29 ~~~~~~VLDlGc-G-~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~  104 (248)
                      +.|+.+||-.|+ | .|..+..++...-.++++++.+++.++.+++.    +.   ...+  |..+.++.+.+..  ...
T Consensus        26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~----Ga---~~vi--~~~~~~~~~~i~~~t~~~   96 (174)
T d1yb5a2          26 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQN----GA---HEVF--NHREVNYIDKIKKYVGEK   96 (174)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TC---SEEE--ETTSTTHHHHHHHHHCTT
T ss_pred             CCCCCEEEEEeccccccccccccccccCccccccccccccccccccc----Cc---cccc--ccccccHHHHhhhhhccC
Confidence            458999999997 3 36666666665434899999898877777642    21   1122  3344444433321  356


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      .+|+|+....           ...+++..++|+|+|.++..
T Consensus        97 g~d~v~d~~g-----------~~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2          97 GIDIIIEMLA-----------NVNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             CEEEEEESCH-----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             CceEEeeccc-----------HHHHHHHHhccCCCCEEEEE
Confidence            7999976432           12466677899999999875

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.97  E-value=0.015  Score=42.04  Aligned_cols=98  Identities=14%  Similarity=0.104  Sum_probs=60.4

Q ss_pred             hcCCCCeEEEEcCCC-CccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhc-ccCCc
Q 025775           28 YSHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ-EKANQ  105 (248)
Q Consensus        28 ~~~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~  105 (248)
                      -.+++.+||=+|||. |..+..+++..-.+++++|.++.-++.+++.-.       ...+..  .+.+..+.+. ...+.
T Consensus        24 ~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga-------~~~i~~--~~~~~~~~~~~~~~g~   94 (166)
T d1llua2          24 NARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGA-------SLTVNA--RQEDPVEAIQRDIGGA   94 (166)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC-------SEEEET--TTSCHHHHHHHHHSSE
T ss_pred             CCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCc-------cccccc--cchhHHHHHHHhhcCC
Confidence            356899999999986 554555555433599999999998888765311       123322  2233322221 12344


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      .|.|.+...           ...++...+.|+|||.+++.
T Consensus        95 ~~~i~~~~~-----------~~~~~~~~~~l~~~G~iv~~  123 (166)
T d1llua2          95 HGVLVTAVS-----------NSAFGQAIGMARRGGTIALV  123 (166)
T ss_dssp             EEEEECCSC-----------HHHHHHHHTTEEEEEEEEEC
T ss_pred             ccccccccc-----------chHHHHHHHHhcCCcEEEEE
Confidence            555554331           13466778899999998875

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.77  E-value=0.021  Score=41.04  Aligned_cols=99  Identities=17%  Similarity=0.189  Sum_probs=59.9

Q ss_pred             HhcCCCCeEEEEcCCCCccH-hHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc-cCC
Q 025775           27 IYSHPYVTVCDLYCGAGVDV-DKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KAN  104 (248)
Q Consensus        27 ~~~~~~~~VLDlGcG~G~~~-~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~  104 (248)
                      .-..|+.+||=.|||.-+.+ ..++.....+++++|.++.-++.+++.    +    +... .|..+.++...+.. ..+
T Consensus        23 ~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~----G----a~~~-~~~~~~~~~~~~~~~~~~   93 (168)
T d1rjwa2          23 TGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKEL----G----ADLV-VNPLKEDAAKFMKEKVGG   93 (168)
T ss_dssp             HTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT----T----CSEE-ECTTTSCHHHHHHHHHSS
T ss_pred             hCCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhc----C----ccee-cccccchhhhhcccccCC
Confidence            34678999999999874433 344444444899999999988877652    2    1122 22223333322221 234


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      ..|+|.+..+           ...++...+.|+|+|.+++.
T Consensus        94 ~~~~v~~~~~-----------~~~~~~a~~~l~~~G~i~~~  123 (168)
T d1rjwa2          94 VHAAVVTAVS-----------KPAFQSAYNSIRRGGACVLV  123 (168)
T ss_dssp             EEEEEESSCC-----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             CceEEeecCC-----------HHHHHHHHHHhccCCceEec
Confidence            4555544321           23467777889999999876

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=95.62  E-value=0.019  Score=41.82  Aligned_cols=98  Identities=14%  Similarity=0.089  Sum_probs=62.5

Q ss_pred             cCCCCeEEEEcCCCCccH-hHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc-cCCc
Q 025775           29 SHPYVTVCDLYCGAGVDV-DKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ  105 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~-~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~  105 (248)
                      ..|+.+||=+|||..+.+ ..++.. +...++++|.+++-++.+++...       ...+..+  +......... ....
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga-------~~~i~~~--~~~~~~~~~~~~~~g  100 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGA-------DHVVDAR--RDPVKQVMELTRGRG  100 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTC-------SEEEETT--SCHHHHHHHHTTTCC
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhccc-------ceeecCc--ccHHHHHHHhhCCCC
Confidence            568999999999874433 444443 66789999999988887775321       2233322  2222222211 2346


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +|+|+....-          ...++...+.|++||.+++.
T Consensus       101 ~d~vid~~g~----------~~~~~~a~~~l~~~G~iv~~  130 (172)
T d1h2ba2         101 VNVAMDFVGS----------QATVDYTPYLLGRMGRLIIV  130 (172)
T ss_dssp             EEEEEESSCC----------HHHHHHGGGGEEEEEEEEEC
T ss_pred             ceEEEEecCc----------chHHHHHHHHHhCCCEEEEE
Confidence            9988654421          23577788899999999876

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=95.48  E-value=0.42  Score=37.68  Aligned_cols=110  Identities=10%  Similarity=0.004  Sum_probs=72.9

Q ss_pred             CeEEEEcCCCCccHhHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcC--CCceEEEEEcCCCCCchhhhhccc---CCc
Q 025775           33 VTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQR--KNFIAEFFEADPCAENFETQMQEK---ANQ  105 (248)
Q Consensus        33 ~~VLDlGcG~G~~~~~l~~~--~~~~v~giDis~~~l~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~---~~~  105 (248)
                      ..|+.||||-=  +..+.-.  +...++=+| -|++++.-++.+...+  ...+...+..|+.+. ....+...   ...
T Consensus        91 ~qvV~LGaGlD--Tr~~Rl~~~~~~~~~EvD-~p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~-~~~~L~~~g~d~~~  166 (297)
T d2uyoa1          91 RQFVILASGLD--SRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQD-WPPALRSAGFDPSA  166 (297)
T ss_dssp             CEEEEETCTTC--CHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSC-HHHHHHHTTCCTTS
T ss_pred             CeEEEeCcccC--ChhhhcCCCcCceEEEcC-ChHHHHHHHHHHHhcCCCCCceEEEecccccch-HHHHHHhcCCCCCC
Confidence            45677988764  4444322  222566666 3777777777666543  234567888888753 32333221   234


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecC
Q 025775          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (248)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  148 (248)
                      --++++-.++.|  .+.+....+++.+.+...||+.+++...+
T Consensus       167 ptl~i~EGvl~Y--L~~~~~~~ll~~i~~~~~~GS~l~~d~~~  207 (297)
T d2uyoa1         167 RTAWLAEGLLMY--LPATAQDGLFTEIGGLSAVGSRIAVETSP  207 (297)
T ss_dssp             CEEEEECSCGGG--SCHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred             CEEEEEcccccc--CCHHHHHHHHHHHHHhCCCCCEEEEEecc
Confidence            456777777887  67889999999999999999999998544

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=95.48  E-value=0.018  Score=45.89  Aligned_cols=103  Identities=12%  Similarity=0.006  Sum_probs=65.6

Q ss_pred             CeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEec
Q 025775           33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCF  112 (248)
Q Consensus        33 ~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~  112 (248)
                      .+|||+-||-|++...+...++..+.++|+++.+.+.-+..+.       ...++.|+.+.+..     .-...|+++..
T Consensus         1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~-------~~~~~~Di~~~~~~-----~~~~~dll~~g   68 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS-------AKLIKGDISKISSD-----EFPKCDGIIGG   68 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCC-------SEEEESCTTTSCGG-----GSCCCSEEEEC
T ss_pred             CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC-------CCCccCChhhCCHh-----HcccccEEeec
Confidence            4799999999999888877788777899999988776554432       34678999876543     13468999875


Q ss_pred             cchhhh--------cCCHH-HHHHHHHHHhccccCCcEEEEEec
Q 025775          113 QHLQMC--------FETEE-RARRLLQNVSSLLKPGGYFLGITP  147 (248)
Q Consensus       113 ~~l~~~--------~~~~~-~~~~~l~~~~~~LkpgG~~i~~~~  147 (248)
                      +-....        ..... .+---+-++.+.++|.-.++=-++
T Consensus        69 ~PCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~Pk~~~lENV~  112 (324)
T d1dcta_          69 PPCQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPIFFLAENVK  112 (324)
T ss_dssp             CCCTTTSSSSCCCCSSSHHHHHHHHHHHHHHHHCCSEEEEEEEG
T ss_pred             ccccccccccccccccccccchHHHHHHHHHhhCCceeeccccc
Confidence            422110        12221 121222335566789755554444

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=95.47  E-value=0.016  Score=45.05  Aligned_cols=114  Identities=15%  Similarity=0.079  Sum_probs=73.7

Q ss_pred             CCCeEEEEcCCCCccHhHHHHc-----------------------------------------CCCeEEEEeCChHHHHH
Q 025775           31 PYVTVCDLYCGAGVDVDKWETA-----------------------------------------LIANYIGIDVATSGIGE   69 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~-----------------------------------------~~~~v~giDis~~~l~~   69 (248)
                      .+..++|..||+|.++...+..                                         ....+.|.|+++.+++.
T Consensus        50 ~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~  129 (249)
T d1o9ga_          50 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  129 (249)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHH
Confidence            5567999999999877544321                                         00146789999999988


Q ss_pred             HH---HHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEeccchhhhcC-----CHHHHHHHHHHHhccccCCcE
Q 025775           70 AR---DTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFE-----TEERARRLLQNVSSLLKPGGY  141 (248)
Q Consensus        70 a~---~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~-----~~~~~~~~l~~~~~~LkpgG~  141 (248)
                      |+   +.....+....+.+.+.|+++..-..... .+...++|+|+--.-.-+.     ..+....+...+.+.+.....
T Consensus       130 A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~-~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p~~s~  208 (249)
T d1o9ga_         130 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVL-AGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAV  208 (249)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHH-TTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCE
T ss_pred             HHHHHHHHHHcCCCceeeeeecchhccCcchhcc-CCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCCCCcE
Confidence            74   35555555566899999987644322111 2456789988642211111     235677888888888866666


Q ss_pred             EEEE
Q 025775          142 FLGI  145 (248)
Q Consensus       142 ~i~~  145 (248)
                      ++++
T Consensus       209 ~~it  212 (249)
T d1o9ga_         209 IAVT  212 (249)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            6665

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.43  E-value=0.0072  Score=44.46  Aligned_cols=100  Identities=13%  Similarity=0.066  Sum_probs=62.8

Q ss_pred             cCCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhc-ccCCc
Q 025775           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ-EKANQ  105 (248)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~  105 (248)
                      ++++.+||=+|||. |..+..+++. +...++.+|+++.-++.|++.-.       ...+...-.+........ ...+.
T Consensus        26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga-------~~~i~~~~~~~~~~~~~~~~~~~G   98 (174)
T d1e3ia2          26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGA-------TDCLNPRELDKPVQDVITELTAGG   98 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC-------SEEECGGGCSSCHHHHHHHHHTSC
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCC-------CcccCCccchhhhhhhHhhhhcCC
Confidence            56899999999998 6666666555 66689999999998888776421       112221111111111110 02467


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHhccccCC-cEEEEE
Q 025775          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG-GYFLGI  145 (248)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkpg-G~~i~~  145 (248)
                      +|+|+-.-.          ....+++..+.+++| |.+++.
T Consensus        99 ~d~vie~~G----------~~~~~~~a~~~~~~g~G~~v~v  129 (174)
T d1e3ia2          99 VDYSLDCAG----------TAQTLKAAVDCTVLGWGSCTVV  129 (174)
T ss_dssp             BSEEEESSC----------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred             CcEEEEecc----------cchHHHHHHHHhhcCCeEEEec
Confidence            899865332          234577788899996 998876

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=95.10  E-value=0.019  Score=46.02  Aligned_cols=70  Identities=14%  Similarity=0.051  Sum_probs=52.3

Q ss_pred             CCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      .+.+||||-||-|+....+...++.-+.++|+++.+++.-+..+...        .++|+.+....     ....+|+++
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~~--------~~~Di~~~~~~-----~~~~~Dll~   76 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK--------PEGDITQVNEK-----TIPDHDILC   76 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC--------CBSCGGGSCGG-----GSCCCSEEE
T ss_pred             CCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCCC--------CcCchhcCchh-----hcceeeeee
Confidence            56899999999999999998888867788999999988776665421        24677554432     234689988


Q ss_pred             ecc
Q 025775          111 CFQ  113 (248)
Q Consensus       111 ~~~  113 (248)
                      ...
T Consensus        77 ggp   79 (327)
T d2c7pa1          77 AGF   79 (327)
T ss_dssp             EEC
T ss_pred             ccc
Confidence            744

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.54  E-value=0.16  Score=39.12  Aligned_cols=84  Identities=10%  Similarity=-0.007  Sum_probs=58.0

Q ss_pred             CCCeEEEEcCCCCc---cHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh----hhhcccC
Q 025775           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE----TQMQEKA  103 (248)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~~~  103 (248)
                      ++..||=-|++.|-   .+..+++.+. +|+.+|.+++.++.+.+.....+...++.++++|+.++.-.    ....+..
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~   87 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH   87 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            46789999988763   2234445566 89999999999998888777655445688999999874321    1122234


Q ss_pred             CceeEEEeccch
Q 025775          104 NQADLVCCFQHL  115 (248)
Q Consensus       104 ~~fD~V~~~~~l  115 (248)
                      ++.|+++.....
T Consensus        88 g~iD~lVnnAg~   99 (257)
T d1xg5a_          88 SGVDICINNAGL   99 (257)
T ss_dssp             CCCSEEEECCCC
T ss_pred             CCCCEEEecccc
Confidence            678988776533

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.35  E-value=0.14  Score=35.14  Aligned_cols=98  Identities=11%  Similarity=0.019  Sum_probs=58.7

Q ss_pred             eEEEEcCCC-CccHhH-HHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEe
Q 025775           34 TVCDLYCGA-GVDVDK-WETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (248)
Q Consensus        34 ~VLDlGcG~-G~~~~~-l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~  111 (248)
                      +|+=+|+|. |..+.. |...+. .|+.+|.+++.++.+...+   +    ...+++|..+.......  .-...|.+++
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~~~~---~----~~vi~Gd~~~~~~l~~~--~i~~a~~vv~   71 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEI---D----ALVINGDCTKIKTLEDA--GIEDADMYIA   71 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC---S----SEEEESCTTSHHHHHHT--TTTTCSEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-CcceecCChhhhhhhhhhh---h----hhhccCcccchhhhhhc--Chhhhhhhcc
Confidence            567777764 433332 223354 8999999999888765542   2    56899999886654432  2356888876


Q ss_pred             ccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       112 ~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      ..      .+. ...-+.....+.+.+.-. +....+.
T Consensus        72 ~t------~~d-~~N~~~~~~~k~~~~~~i-I~~~~~~  101 (132)
T d1lssa_          72 VT------GKE-EVNLMSSLLAKSYGINKT-IARISEI  101 (132)
T ss_dssp             CC------SCH-HHHHHHHHHHHHTTCCCE-EEECSST
T ss_pred             cC------CcH-HHHHHHHHHHHHcCCceE-EEEecCH
Confidence            33      222 233344555566777744 4444443

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.23  E-value=0.066  Score=38.49  Aligned_cols=99  Identities=16%  Similarity=0.194  Sum_probs=61.6

Q ss_pred             hcCCCCeEEEEcC-CC-CccHhHHHH-cCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc--c
Q 025775           28 YSHPYVTVCDLYC-GA-GVDVDKWET-ALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--K  102 (248)
Q Consensus        28 ~~~~~~~VLDlGc-G~-G~~~~~l~~-~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~  102 (248)
                      -..++.+||=+|| |. |..+..++. .+...|+++|.++.-++.+++.-.       ...+..  .+.++.+....  .
T Consensus        24 ~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga-------~~~i~~--~~~~~~~~~~~~~~   94 (170)
T d1jvba2          24 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGA-------DYVINA--SMQDPLAEIRRITE   94 (170)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTC-------SEEEET--TTSCHHHHHHHHTT
T ss_pred             CCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCC-------ceeecc--CCcCHHHHHHHHhh
Confidence            3568999999997 43 443444444 366799999999988887775311       122332  22333222211  2


Q ss_pred             CCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       103 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      .+.+|+|+....          -...++...+.++|||.+++.
T Consensus        95 ~~~~d~vid~~g----------~~~~~~~a~~~l~~~G~iv~~  127 (170)
T d1jvba2          95 SKGVDAVIDLNN----------SEKTLSVYPKALAKQGKYVMV  127 (170)
T ss_dssp             TSCEEEEEESCC----------CHHHHTTGGGGEEEEEEEEEC
T ss_pred             cccchhhhcccc----------cchHHHhhhhhcccCCEEEEe
Confidence            456999876442          123556678899999999876

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=93.73  E-value=0.088  Score=37.80  Aligned_cols=96  Identities=16%  Similarity=0.085  Sum_probs=60.1

Q ss_pred             hcCCCCeEEEEcCCC-CccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           28 YSHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        28 ~~~~~~~VLDlGcG~-G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      -+.|+.+||=+|||. |..+..+++..-.+++++|.+++-++.+++.-.       ..++..  .+....   ....+.+
T Consensus        27 ~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGa-------d~~i~~--~~~~~~---~~~~~~~   94 (168)
T d1uufa2          27 QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGA-------DEVVNS--RNADEM---AAHLKSF   94 (168)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTC-------SEEEET--TCHHHH---HTTTTCE
T ss_pred             CCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCC-------cEEEEC--chhhHH---HHhcCCC
Confidence            366899999999986 656666666543478899999988877764321       122222  221111   1124579


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      |+|+..-...          ..++...++++++|.+++.
T Consensus        95 D~vid~~g~~----------~~~~~~~~~l~~~G~iv~~  123 (168)
T d1uufa2          95 DFILNTVAAP----------HNLDDFTTLLKRDGTMTLV  123 (168)
T ss_dssp             EEEEECCSSC----------CCHHHHHTTEEEEEEEEEC
T ss_pred             ceeeeeeecc----------hhHHHHHHHHhcCCEEEEe
Confidence            9886543211          1245667899999999886

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=93.72  E-value=0.12  Score=37.36  Aligned_cols=97  Identities=14%  Similarity=0.118  Sum_probs=63.4

Q ss_pred             cCCCCeEEEEcCCC--CccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc--cCC
Q 025775           29 SHPYVTVCDLYCGA--GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (248)
Q Consensus        29 ~~~~~~VLDlGcG~--G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~  104 (248)
                      +.|+.+||=.|+|.  |..+..++.....+++++|.|++-++.+++.-.       -+.+  |..+.++.+.+.+  ...
T Consensus        26 l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa-------~~vi--~~~~~d~~~~v~~~t~g~   96 (179)
T d1qora2          26 IKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGA-------WQVI--NYREEDLVERLKEITGGK   96 (179)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTC-------SEEE--ETTTSCHHHHHHHHTTTC
T ss_pred             CCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCC-------eEEE--ECCCCCHHHHHHHHhCCC
Confidence            46899999997765  555566666544599999999999888775421       1122  4444555444332  245


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      .+|+|+....-.           .+......|+++|.++..
T Consensus        97 g~d~v~d~~g~~-----------~~~~~~~~l~~~G~~v~~  126 (179)
T d1qora2          97 KVRVVYDSVGRD-----------TWERSLDCLQRRGLMVSF  126 (179)
T ss_dssp             CEEEEEECSCGG-----------GHHHHHHTEEEEEEEEEC
T ss_pred             CeEEEEeCccHH-----------HHHHHHHHHhcCCeeeec
Confidence            799987654322           345677899999988764

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=93.70  E-value=0.023  Score=41.34  Aligned_cols=98  Identities=15%  Similarity=0.162  Sum_probs=62.0

Q ss_pred             CCCeEEEEcCCC-CccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           31 PYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        31 ~~~~VLDlGcG~-G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      ++.+|+=||+|. |..+...+..--+.|+.+|.+++.+++.+..+...     ++....+-  ..+.+.+    ...|+|
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~-----~~~~~~~~--~~l~~~~----~~aDiv   99 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSR-----VELLYSNS--AEIETAV----AEADLL   99 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGG-----SEEEECCH--HHHHHHH----HTCSEE
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhccc-----ceeehhhh--hhHHHhh----ccCcEE
Confidence            578999999997 44444444444459999999999999887776543     34443331  2232222    458999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEE
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i  143 (248)
                      +....+..    .....-+-+++.+.||||.+++
T Consensus       100 I~aalipG----~~aP~lIt~~mv~~Mk~GSVIV  129 (168)
T d1pjca1         100 IGAVLVPG----RRAPILVPASLVEQMRTGSVIV  129 (168)
T ss_dssp             EECCCCTT----SSCCCCBCHHHHTTSCTTCEEE
T ss_pred             EEeeecCC----cccCeeecHHHHhhcCCCcEEE
Confidence            88654322    1112223456778899999887

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=93.62  E-value=0.046  Score=39.93  Aligned_cols=46  Identities=17%  Similarity=-0.023  Sum_probs=35.3

Q ss_pred             cCCCCeEEEEcCCCCccH-hHHHHc-CCCeEEEEeCChHHHHHHHHHH
Q 025775           29 SHPYVTVCDLYCGAGVDV-DKWETA-LIANYIGIDVATSGIGEARDTW   74 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~-~~l~~~-~~~~v~giDis~~~l~~a~~~~   74 (248)
                      ++++.+||=+|||..+.+ ...+.. +..+|+++|++++-++.|++.-
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~G   74 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVG   74 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHT
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcC
Confidence            568999999999974433 333333 5679999999999999998763

>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Leucine carboxy methyltransferase Ppm1
domain: Leucine carboxy methyltransferase Ppm1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.23  E-value=0.47  Score=37.97  Aligned_cols=124  Identities=13%  Similarity=0.134  Sum_probs=73.0

Q ss_pred             hHHHHHHHHHhc------CCCCeEEEEcCCCCccHhHHHHcCCCeEEEEeCChHHHHHHHHH-HHhcC------------
Q 025775           18 EFAKTALIKIYS------HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDT-WENQR------------   78 (248)
Q Consensus        18 ~~~~~~li~~~~------~~~~~VLDlGcG~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~-~~~~~------------   78 (248)
                      .|++...|+..+      ++..-|+-||||.=.....+..... .+..+|++-..+-..+.+ .....            
T Consensus        77 y~~Rt~~id~~v~~Fl~~~~~~QVV~LGaG~DTr~~Rl~~~~~-~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~  155 (328)
T d1rjda_          77 TYLRTVGIDAAILEFLVANEKVQVVNLGCGSDLRMLPLLQMFP-HLAYVDIDYNESVELKNSILRESEILRISLGLSKED  155 (328)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSSEEEEEETCTTCCTHHHHHHHCT-TEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSC
T ss_pred             HHHHHHHHHHHHHHHHHHCCCcEEEEeCCccchHHHHhhccCC-CcEEEECCcHHHHHHHHHHHHhchhhhhhccccccc
Confidence            456555444432      3556899999998655555544333 566666664433333332 21100            


Q ss_pred             --------CCceEEEEEcCCCCCchhhhhccc---CCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775           79 --------KNFIAEFFEADPCAENFETQMQEK---ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus        79 --------~~~~~~~~~~d~~~~~~~~~~~~~---~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                              ...+..++.+|+.+......+.+.   ....-++++-.++.|  .+.+...++++.+.+.... |.|++-
T Consensus       156 ~~~~~~~~~s~~y~lv~~DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Y--l~~~~~~~li~~~~~~f~~-~~~i~Y  230 (328)
T d1rjda_         156 TAKSPFLIDQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCY--MHNNESQLLINTIMSKFSH-GLWISY  230 (328)
T ss_dssp             CCCTTEEEECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGG--SCHHHHHHHHHHHHHHCSS-EEEEEE
T ss_pred             cccccccCCCCCeEEEecCCCCcHhhHHHHHccCCCCCCeEEEEeeehhc--CCHHHHHHHHHHHHHhCCC-ceEEEe
Confidence                    112467889998875433222111   233457888888888  6788899999999888755 444443

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=93.23  E-value=0.27  Score=34.84  Aligned_cols=99  Identities=12%  Similarity=0.041  Sum_probs=60.6

Q ss_pred             eEEEEcCCC-C-ccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEe
Q 025775           34 TVCDLYCGA-G-VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (248)
Q Consensus        34 ~VLDlGcG~-G-~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~  111 (248)
                      +|.=||+|. | .++..+.+.+. +|++.|.+++.++.+++.-.       +.-...+.     .     .-...|+|+.
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~~~~-------~~~~~~~~-----~-----~~~~~DiIil   63 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQL-------VDEAGQDL-----S-----LLQTAKIIFL   63 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTS-------CSEEESCG-----G-----GGTTCSEEEE
T ss_pred             EEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHhhc-------cceeeeec-----c-----cccccccccc
Confidence            566788885 3 33445555566 89999999998887765311       10111111     1     1246798864


Q ss_pred             ccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHH
Q 025775          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ  157 (248)
Q Consensus       112 ~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~  157 (248)
                      .       .+.....++++++...++++-+++-+..-.....+...
T Consensus        64 a-------vp~~~~~~vl~~l~~~l~~~~iv~~~~s~~~~~~~~~~  102 (165)
T d2f1ka2          64 C-------TPIQLILPTLEKLIPHLSPTAIVTDVASVKTAIAEPAS  102 (165)
T ss_dssp             C-------SCHHHHHHHHHHHGGGSCTTCEEEECCSCCHHHHHHHH
T ss_pred             c-------CcHhhhhhhhhhhhhhcccccceeeccccchHHHHHHH
Confidence            2       24667889999999999999877654333333433333

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.11  E-value=0.33  Score=34.46  Aligned_cols=103  Identities=13%  Similarity=0.059  Sum_probs=63.8

Q ss_pred             eEEEEcCCC-Cc-cHhHHHHcCC-CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEE
Q 025775           34 TVCDLYCGA-GV-DVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (248)
Q Consensus        34 ~VLDlGcG~-G~-~~~~l~~~~~-~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~  110 (248)
                      +|+=||||. |. ++..+...+. .+++|+|.+++.++.+++.-.       +.....+..  ..      .....|+|+
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~-------~~~~~~~~~--~~------~~~~~dlIi   67 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI-------IDEGTTSIA--KV------EDFSPDFVM   67 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS-------CSEEESCGG--GG------GGTCCSEEE
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhc-------chhhhhhhh--hh------hcccccccc
Confidence            577899997 43 3344544443 489999999999988876421       111111110  01      234678886


Q ss_pred             eccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChhHHHHHHHH
Q 025775          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQK  158 (248)
Q Consensus       111 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~  158 (248)
                      ..-       +.+...+++.++...++++.+++-.......+.+.+.+
T Consensus        68 la~-------p~~~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~  108 (171)
T d2g5ca2          68 LSS-------PVRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLEN  108 (171)
T ss_dssp             ECS-------CHHHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHH
T ss_pred             ccC-------CchhhhhhhhhhhccccccccccccccccHHHHHHHHH
Confidence            533       46668889999999999887766554444555555544

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=93.10  E-value=0.2  Score=35.84  Aligned_cols=100  Identities=12%  Similarity=0.081  Sum_probs=59.8

Q ss_pred             cCCCCeEEEEcCCC-CccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc-cCCc
Q 025775           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ  105 (248)
Q Consensus        29 ~~~~~~VLDlGcG~-G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~  105 (248)
                      ++|+.+||=.|||. |..+..++.. +...|+++|.++.-++.+++.-..       ..+...-........+.. ..+.
T Consensus        26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~-------~~i~~~~~~~~~~~~~~~~~~~g   98 (176)
T d2fzwa2          26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGAT-------ECINPQDFSKPIQEVLIEMTDGG   98 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCS-------EEECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCc-------EEEeCCchhhHHHHHHHHHcCCC
Confidence            67999999999984 2223333333 667999999999998888754221       222221111222211111 2457


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +|+|+-.-.-          ...++....++++||.+++.
T Consensus        99 ~D~vid~~G~----------~~~~~~~~~~~~~g~~~~~v  128 (176)
T d2fzwa2          99 VDYSFECIGN----------VKVMRAALEACHKGWGVSVV  128 (176)
T ss_dssp             BSEEEECSCC----------HHHHHHHHHTBCTTTCEEEE
T ss_pred             CcEeeecCCC----------HHHHHHHHHhhcCCceeEEE
Confidence            9998764422          23566778889998776654

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=93.10  E-value=0.054  Score=39.41  Aligned_cols=45  Identities=16%  Similarity=-0.050  Sum_probs=34.6

Q ss_pred             cCCCCeEEEEcCCCCccH-hHHHHc-CCCeEEEEeCChHHHHHHHHH
Q 025775           29 SHPYVTVCDLYCGAGVDV-DKWETA-LIANYIGIDVATSGIGEARDT   73 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~-~~l~~~-~~~~v~giDis~~~l~~a~~~   73 (248)
                      ++|+.+||=+|||..+.+ ..+++. +...|+++|+++.-++.|++.
T Consensus        25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l   71 (174)
T d1p0fa2          25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL   71 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc
Confidence            569999999999974433 333333 667999999999999988764

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.75  E-value=0.043  Score=43.94  Aligned_cols=73  Identities=16%  Similarity=0.168  Sum_probs=50.2

Q ss_pred             CCeEEEEcCCCCccHhHHHHcCCC--eEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           32 YVTVCDLYCGAGVDVDKWETALIA--NYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        32 ~~~VLDlGcG~G~~~~~l~~~~~~--~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      ..+|+|+-||.|++...+...+..  -+.++|+++.+++.-+..+..      ..+++.|+.+..... +  +....|++
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~~------~~~~~~di~~~~~~~-~--~~~~~Dll   72 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH------TQLLAKTIEGITLEE-F--DRLSFDMI   72 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT------SCEECSCGGGCCHHH-H--HHHCCSEE
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCCC------CCcccCchhhCCHhH-c--CCCCccEE
Confidence            468999999999988888666653  477999999988776655432      346677876544321 1  12358988


Q ss_pred             Eecc
Q 025775          110 CCFQ  113 (248)
Q Consensus       110 ~~~~  113 (248)
                      +...
T Consensus        73 ~ggp   76 (343)
T d1g55a_          73 LMSP   76 (343)
T ss_dssp             EECC
T ss_pred             Eeec
Confidence            7754

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=92.65  E-value=0.44  Score=33.27  Aligned_cols=104  Identities=6%  Similarity=-0.045  Sum_probs=60.6

Q ss_pred             CCeEEEEcCCC-CccHh-HHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEE
Q 025775           32 YVTVCDLYCGA-GVDVD-KWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        32 ~~~VLDlGcG~-G~~~~-~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      ..+|+=+|+|. |..+. .+...+. .++.+|.+++............+    +.++.+|..+.......  .-...|.|
T Consensus         3 knHiII~G~g~~g~~l~~~L~~~~~-~v~vId~d~~~~~~~~~~~~~~~----~~vi~Gd~~d~~~L~~a--~i~~a~~v   75 (153)
T d1id1a_           3 KDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLGDN----ADVIPGDSNDSSVLKKA--GIDRCRAI   75 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHCTT----CEEEESCTTSHHHHHHH--TTTTCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-CEEEEeccchhHHHHHHHhhcCC----cEEEEccCcchHHHHHh--ccccCCEE
Confidence            34577777764 32222 2223344 89999999876544333333333    78899999886654332  34567887


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecCh
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  149 (248)
                      ++..      .+.. ....+....+.+.|...++....+.
T Consensus        76 i~~~------~~d~-~n~~~~~~~r~~~~~~~iia~~~~~  108 (153)
T d1id1a_          76 LALS------DNDA-DNAFVVLSAKDMSSDVKTVLAVSDS  108 (153)
T ss_dssp             EECS------SCHH-HHHHHHHHHHHHTSSSCEEEECSSG
T ss_pred             EEcc------ccHH-HHHHHHHHHHHhCCCCceEEEEcCH
Confidence            6643      2232 2333444556667888877775554

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.22  E-value=0.12  Score=37.34  Aligned_cols=97  Identities=16%  Similarity=0.110  Sum_probs=59.2

Q ss_pred             cCCCCeEEEEcC-C-CCccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc--cCC
Q 025775           29 SHPYVTVCDLYC-G-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (248)
Q Consensus        29 ~~~~~~VLDlGc-G-~G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~  104 (248)
                      +.++.+||=.|. | .|..+..++.....++++++-+++-.+.+++.    +.   ...+  |..+.++.+.+.+  ...
T Consensus        23 ~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~----Ga---~~vi--~~~~~~~~~~v~~~t~~~   93 (183)
T d1pqwa_          23 LSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRL----GV---EYVG--DSRSVDFADEILELTDGY   93 (183)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTT----CC---SEEE--ETTCSTHHHHHHHHTTTC
T ss_pred             CCCCCEEEEECCCCCcccccchhhccccccceeeecccccccccccc----cc---cccc--cCCccCHHHHHHHHhCCC
Confidence            458899998773 3 36666666665334888888888777666532    21   1122  2333444333322  235


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      .+|+|+....-           ..++.+.++|+++|.++..
T Consensus        94 g~d~v~d~~g~-----------~~~~~~~~~l~~~G~~v~~  123 (183)
T d1pqwa_          94 GVDVVLNSLAG-----------EAIQRGVQILAPGGRFIEL  123 (183)
T ss_dssp             CEEEEEECCCT-----------HHHHHHHHTEEEEEEEEEC
T ss_pred             CEEEEEecccc-----------hHHHHHHHHhcCCCEEEEE
Confidence            79999875421           2355567899999999875

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=91.14  E-value=0.58  Score=33.62  Aligned_cols=97  Identities=14%  Similarity=-0.024  Sum_probs=60.4

Q ss_pred             cCCCCeEEEEcCCC--CccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh-hc-ccCC
Q 025775           29 SHPYVTVCDLYCGA--GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ-MQ-EKAN  104 (248)
Q Consensus        29 ~~~~~~VLDlGcG~--G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~-~~~~  104 (248)
                      ++++.+||=.|++.  |..+..+++....++++++-+++-++.+++.-.       ...+..  .+.+..+. .. ....
T Consensus        27 v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga-------~~vi~~--~~~~~~~~~~~~~~~~   97 (182)
T d1v3va2          27 VKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGF-------DAAFNY--KTVNSLEEALKKASPD   97 (182)
T ss_dssp             CCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC-------SEEEET--TSCSCHHHHHHHHCTT
T ss_pred             CCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhh-------hhhccc--ccccHHHHHHHHhhcC
Confidence            45899999888765  455556666544599999999887776665321       112222  22222211 11 1345


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      .+|+|+..-.           .+.++...++|+++|.++..
T Consensus        98 Gvd~v~D~vG-----------~~~~~~~~~~l~~~G~~v~~  127 (182)
T d1v3va2          98 GYDCYFDNVG-----------GEFLNTVLSQMKDFGKIAIC  127 (182)
T ss_dssp             CEEEEEESSC-----------HHHHHHHGGGEEEEEEEEEC
T ss_pred             CCceeEEecC-----------chhhhhhhhhccCCCeEEee
Confidence            6999965432           13567888999999999875

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=90.45  E-value=0.38  Score=34.41  Aligned_cols=99  Identities=13%  Similarity=0.012  Sum_probs=56.4

Q ss_pred             cCCCCeEEEEcCCCCccH-hHHHH-cCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEE-cCCCCCchhhhh-cccCC
Q 025775           29 SHPYVTVCDLYCGAGVDV-DKWET-ALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFE-ADPCAENFETQM-QEKAN  104 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~-~~l~~-~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~-~~~~~  104 (248)
                      ++|+.+||=+|+|.++.+ ..++. .+...|+++|.+++-++.+++.-..       ..+. .+.. ....... ....+
T Consensus        26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~-------~~i~~~~~~-~~~~~~~~~~~~~   97 (176)
T d2jhfa2          26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT-------ECVNPQDYK-KPIQEVLTEMSNG   97 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS-------EEECGGGCS-SCHHHHHHHHTTS
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCe-------eEEecCCch-hHHHHHHHHHhcC
Confidence            669999999999864433 23333 3667999999999998888654221       1221 1111 1111111 11346


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHhccccCC-cEEEEE
Q 025775          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG-GYFLGI  145 (248)
Q Consensus       105 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkpg-G~~i~~  145 (248)
                      .+|+|+-.....          ..++.....++++ |.+++.
T Consensus        98 G~D~vid~~G~~----------~~~~~a~~~~~~~~g~~~~~  129 (176)
T d2jhfa2          98 GVDFSFEVIGRL----------DTMVTALSCCQEAYGVSVIV  129 (176)
T ss_dssp             CBSEEEECSCCH----------HHHHHHHHHBCTTTCEEEEC
T ss_pred             CCCEEEecCCch----------hHHHHHHHHHhcCCcceEEe
Confidence            799987654322          2344455567775 555554

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=90.06  E-value=0.72  Score=35.28  Aligned_cols=83  Identities=8%  Similarity=-0.015  Sum_probs=56.8

Q ss_pred             CCCeEEEEcCCCC---ccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh-----hccc
Q 025775           31 PYVTVCDLYCGAG---VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ-----MQEK  102 (248)
Q Consensus        31 ~~~~VLDlGcG~G---~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~-----~~~~  102 (248)
                      ++.+||=.|++.|   ..+..++..+. +|+.+|.++..++.+.+.....+  .++.++++|+.+..-.+.     ....
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~--~~~~~~~~D~s~~~~~~~~~~~~~~~~   81 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKG--LNVEGSVCDLLSRTERDKLMQTVAHVF   81 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CCceEEEeecCCHHHHHHHHHHHHHHh
Confidence            5788999998776   22345555576 89999999999988877776544  347788999987542111     1122


Q ss_pred             CCceeEEEeccchh
Q 025775          103 ANQADLVCCFQHLQ  116 (248)
Q Consensus       103 ~~~fD~V~~~~~l~  116 (248)
                      .+..|++++....+
T Consensus        82 ~g~idilinnag~~   95 (258)
T d1ae1a_          82 DGKLNILVNNAGVV   95 (258)
T ss_dssp             TSCCCEEEECCCCC
T ss_pred             CCCcEEEecccccc
Confidence            46789888755443

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=89.76  E-value=1  Score=34.35  Aligned_cols=83  Identities=13%  Similarity=0.010  Sum_probs=55.8

Q ss_pred             CCCeEEEEcCCCCc---cHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhcccC
Q 025775           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKA  103 (248)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~~  103 (248)
                      ++..+|=-|++.|-   .+..++..+. +|..+|.+++.++.+.+.........++..+++|+.+..-..    ...+.-
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   81 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   81 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence            36677878877762   2345555566 899999999999887776655443446888999998743211    111234


Q ss_pred             CceeEEEeccc
Q 025775          104 NQADLVCCFQH  114 (248)
Q Consensus       104 ~~fD~V~~~~~  114 (248)
                      ++.|+++.+..
T Consensus        82 G~iDiLVnnAG   92 (258)
T d1iy8a_          82 GRIDGFFNNAG   92 (258)
T ss_dssp             SCCSEEEECCC
T ss_pred             CCCCEEEECCc
Confidence            67999887654

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=89.73  E-value=0.81  Score=30.78  Aligned_cols=94  Identities=10%  Similarity=-0.026  Sum_probs=58.5

Q ss_pred             CCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEeccchhhh
Q 025775           40 CGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMC  118 (248)
Q Consensus        40 cG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~  118 (248)
                      ||.|.....++.. ....++.+|.++...+..+.    .+    +.++.+|..+.......  .-.+.+.+++..     
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~----~~----~~~i~Gd~~~~~~L~~a--~i~~A~~vi~~~-----   70 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLR----SG----ANFVHGDPTRVSDLEKA--NVRGARAVIVNL-----   70 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHH----TT----CEEEESCTTSHHHHHHT--TCTTCSEEEECC-----
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHh----cC----ccccccccCCHHHHHHh--hhhcCcEEEEec-----
Confidence            4556566666554 22368899999998776542    23    67899999876544332  235677776533     


Q ss_pred             cCCHHHHHHHHHHHhccccCCcEEEEEecChh
Q 025775          119 FETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (248)
Q Consensus       119 ~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~  150 (248)
                       .+.. ....+....+.+.|...++....+..
T Consensus        71 -~~d~-~n~~~~~~~r~~~~~~~iia~~~~~~  100 (129)
T d2fy8a1          71 -ESDS-ETIHCILGIRKIDESVRIIAEAERYE  100 (129)
T ss_dssp             -SSHH-HHHHHHHHHHHHCSSSCEEEECSSGG
T ss_pred             -cchh-hhHHHHHHHHHHCCCceEEEEEcCHH
Confidence             2222 33344445667889988888766654

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.71  E-value=0.95  Score=34.30  Aligned_cols=83  Identities=10%  Similarity=0.053  Sum_probs=56.6

Q ss_pred             CCCeEEEEcCCCCc---cHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhcccC
Q 025775           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKA  103 (248)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~~  103 (248)
                      .|..+|=-|++.|-   .+..+++.+. +|+.+|.+++.++...+.....+  .++..+.+|+.+..-..    ...+..
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~~~   82 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAEI   82 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            46778888888762   2334445566 89999999999988877776543  35889999998753211    122245


Q ss_pred             CceeEEEeccchh
Q 025775          104 NQADLVCCFQHLQ  116 (248)
Q Consensus       104 ~~fD~V~~~~~l~  116 (248)
                      +..|+++......
T Consensus        83 g~idilinnag~~   95 (244)
T d1yb1a_          83 GDVSILVNNAGVV   95 (244)
T ss_dssp             CCCSEEEECCCCC
T ss_pred             CCCceeEeecccc
Confidence            7789887765443

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.58  E-value=0.57  Score=35.55  Aligned_cols=78  Identities=10%  Similarity=-0.007  Sum_probs=53.4

Q ss_pred             CCCeEEEEcCCCC---ccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775           31 PYVTVCDLYCGAG---VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        31 ~~~~VLDlGcG~G---~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      .|.++|=-|++.|   ..+..++..+. +|+.+|.+++.++...+....      +..+++|+.+..-.+..-+.-++.|
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~~~~------~~~~~~Dv~d~~~v~~~~~~~g~iD   78 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRECPG------IEPVCVDLGDWEATERALGSVGPVD   78 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTT------CEEEECCTTCHHHHHHHHTTCCCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcCC------CeEEEEeCCCHHHHHHHHHHhCCce
Confidence            5788999998876   23345555566 899999999988776654432      6788999987543333333457899


Q ss_pred             EEEeccch
Q 025775          108 LVCCFQHL  115 (248)
Q Consensus       108 ~V~~~~~l  115 (248)
                      +++.....
T Consensus        79 ilVnnAg~   86 (244)
T d1pr9a_          79 LLVNNAAV   86 (244)
T ss_dssp             EEEECCCC
T ss_pred             EEEecccc
Confidence            88876543

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=88.98  E-value=0.38  Score=32.69  Aligned_cols=98  Identities=10%  Similarity=-0.047  Sum_probs=53.9

Q ss_pred             EEEEcCCC-CccHhHHH-HcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCceeEEEec
Q 025775           35 VCDLYCGA-GVDVDKWE-TALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCF  112 (248)
Q Consensus        35 VLDlGcG~-G~~~~~l~-~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD~V~~~  112 (248)
                      ++=+|+|. |..+...+ ..+. .|+.+|.+++.++.++.    .+    ...+.+|+.+.......  .-...|.|++.
T Consensus         3 ~iIiG~G~~G~~la~~L~~~g~-~vvvid~d~~~~~~~~~----~~----~~~~~gd~~~~~~l~~a--~i~~a~~vi~~   71 (134)
T d2hmva1           3 FAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYAS----YA----THAVIANATEENELLSL--GIRNFEYVIVA   71 (134)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHHTTT----TC----SEEEECCTTCTTHHHHH--TGGGCSEEEEC
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-eEEEecCcHHHHHHHHH----hC----Ccceeeecccchhhhcc--CCccccEEEEE
Confidence            44456664 43333332 3355 89999999998887642    22    35678999887654432  22457876554


Q ss_pred             cchhhhcCCHHHHHHHHHHHhccccCCcEEEEEecChh
Q 025775          113 QHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (248)
Q Consensus       113 ~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~  150 (248)
                      ..      +......+.. ..+.+.+...++....+..
T Consensus        72 ~~------~~~~~~~~~~-~~~~~~~~~~iiar~~~~~  102 (134)
T d2hmva1          72 IG------ANIQASTLTT-LLLKELDIPNIWVKAQNYY  102 (134)
T ss_dssp             CC------SCHHHHHHHH-HHHHHTTCSEEEEECCSHH
T ss_pred             cC------chHHhHHHHH-HHHHHcCCCcEEeecccHh
Confidence            31      1222222333 3333456667666555543

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=88.47  E-value=0.4  Score=38.92  Aligned_cols=48  Identities=6%  Similarity=-0.037  Sum_probs=34.7

Q ss_pred             cCCCCeEEEEcCCCCccHhHHHHc--------CCCeEEEEeCChHHHHHHHHHHHh
Q 025775           29 SHPYVTVCDLYCGAGVDVDKWETA--------LIANYIGIDVATSGIGEARDTWEN   76 (248)
Q Consensus        29 ~~~~~~VLDlGcG~G~~~~~l~~~--------~~~~v~giDis~~~l~~a~~~~~~   76 (248)
                      .++..+|+|+|+|+|.++..+...        ....++-+++|+...+.-+++...
T Consensus        77 ~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~  132 (365)
T d1zkda1          77 EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG  132 (365)
T ss_dssp             CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT
T ss_pred             CCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhcc
Confidence            345568999999999987665432        223689999999987766665543

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.48  E-value=1.3  Score=33.97  Aligned_cols=112  Identities=11%  Similarity=0.035  Sum_probs=69.7

Q ss_pred             CCeEEEEcCCCCccHh----HHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCch----hhhhcccC
Q 025775           32 YVTVCDLYCGAGVDVD----KWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF----ETQMQEKA  103 (248)
Q Consensus        32 ~~~VLDlGcG~G~~~~----~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~~~  103 (248)
                      |.+|.=|--|+++...    .+++.+...|+..+.+++.++.+.+.+...+  .++.++++|+.+..-    .+.+....
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dvs~~~sv~~~~~~~~~~~   79 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRKEY   79 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEEecCCHHHHHHHHHHHHHhc
Confidence            5566444334433333    3444444599999999999998888776543  347899999987432    11222234


Q ss_pred             CceeEEEeccchhhh--cCC--HHHHH-----------HHHHHHhccccCCcEEEEE
Q 025775          104 NQADLVCCFQHLQMC--FET--EERAR-----------RLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       104 ~~fD~V~~~~~l~~~--~~~--~~~~~-----------~~l~~~~~~LkpgG~~i~~  145 (248)
                      ++.|+++++.++...  ...  .++.+           .+.+.+...|+++|.++..
T Consensus        80 g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivni  136 (275)
T d1wmaa1          80 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNV  136 (275)
T ss_dssp             SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence            689999987654321  111  11222           4566778888999988766

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=86.72  E-value=0.24  Score=35.51  Aligned_cols=93  Identities=16%  Similarity=0.091  Sum_probs=56.5

Q ss_pred             cCCCCeEEEEcC-CC-CccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCce
Q 025775           29 SHPYVTVCDLYC-GA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (248)
Q Consensus        29 ~~~~~~VLDlGc-G~-G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f  106 (248)
                      ++|+.+||=.|. |. |..+..++.....++++++.+++-++.+++.-..       ..+  |..+  ...... ....+
T Consensus        25 ~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~-------~~i--~~~~--~~~~~~-~~~g~   92 (171)
T d1iz0a2          25 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAE-------EAA--TYAE--VPERAK-AWGGL   92 (171)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCS-------EEE--EGGG--HHHHHH-HTTSE
T ss_pred             CCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccc-------eee--ehhh--hhhhhh-ccccc
Confidence            568999999884 43 5555666665444899999998887777653111       111  1111  111111 24579


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       107 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      |+|+-...     .       .++...+.|+|+|.++..
T Consensus        93 D~v~d~~G-----~-------~~~~~~~~l~~~G~~v~~  119 (171)
T d1iz0a2          93 DLVLEVRG-----K-------EVEESLGLLAHGGRLVYI  119 (171)
T ss_dssp             EEEEECSC-----T-------THHHHHTTEEEEEEEEEC
T ss_pred             cccccccc-----h-------hHHHHHHHHhcCCcEEEE
Confidence            99875321     1       145567899999998864

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=86.71  E-value=0.11  Score=37.99  Aligned_cols=44  Identities=16%  Similarity=0.015  Sum_probs=32.5

Q ss_pred             CCCeEEEEcCCCCc-cHhHHHHcCCCeEEEEeCChHHHHHHHHHH
Q 025775           31 PYVTVCDLYCGAGV-DVDKWETALIANYIGIDVATSGIGEARDTW   74 (248)
Q Consensus        31 ~~~~VLDlGcG~G~-~~~~l~~~~~~~v~giDis~~~l~~a~~~~   74 (248)
                      ++.+||=||+|..+ .+...+..--+.|+.+|+++..+++.+...
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~   72 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLG   72 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTT
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhh
Confidence            67899999999844 333333333449999999999998887654

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.47  E-value=1  Score=34.16  Aligned_cols=85  Identities=7%  Similarity=-0.036  Sum_probs=55.3

Q ss_pred             CCCeEEEEcCCCCc---cHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhcccC
Q 025775           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKA  103 (248)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~~  103 (248)
                      .|..+|=-|++.|-   .+..++..+. +|+.+|.+++.++.+.+.........++.++++|+.+..-.+    ...+.-
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   80 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            36677777876652   1233444465 899999999999888776654333345889999998743211    111234


Q ss_pred             CceeEEEeccchh
Q 025775          104 NQADLVCCFQHLQ  116 (248)
Q Consensus       104 ~~fD~V~~~~~l~  116 (248)
                      ++.|+++......
T Consensus        81 G~iDilVnnAg~~   93 (254)
T d2gdza1          81 GRLDILVNNAGVN   93 (254)
T ss_dssp             SCCCEEEECCCCC
T ss_pred             CCcCeeccccccc
Confidence            6899988876554

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.16  E-value=3  Score=29.73  Aligned_cols=98  Identities=10%  Similarity=-0.080  Sum_probs=58.8

Q ss_pred             cCCC--CeEEEEc--CCCCccHhHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcc-c
Q 025775           29 SHPY--VTVCDLY--CGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-K  102 (248)
Q Consensus        29 ~~~~--~~VLDlG--cG~G~~~~~l~~~-~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~  102 (248)
                      ++++  ..||=.|  .|.|..+..+++. +...+++++.+++.........   +.   .  ...|..+.++.+.+.. .
T Consensus        26 ~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~---ga---d--~vi~~~~~~~~~~~~~~~   97 (187)
T d1vj1a2          26 ISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSEL---GF---D--AAVNYKTGNVAEQLREAC   97 (187)
T ss_dssp             CCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHS---CC---S--EEEETTSSCHHHHHHHHC
T ss_pred             CCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcc---cc---e--EEeeccchhHHHHHHHHh
Confidence            3455  6788877  3458888888775 5557888888776554433221   21   1  2223344444433222 3


Q ss_pred             CCceeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       103 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +..+|+|+-.-.           ...++...++|+++|.++..
T Consensus        98 ~~GvDvv~D~vG-----------g~~~~~~~~~l~~~G~iv~~  129 (187)
T d1vj1a2          98 PGGVDVYFDNVG-----------GDISNTVISQMNENSHIILC  129 (187)
T ss_dssp             TTCEEEEEESSC-----------HHHHHHHHTTEEEEEEEEEC
T ss_pred             ccCceEEEecCC-----------chhHHHHhhhccccccEEEe
Confidence            456999964331           12467788999999999864

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=84.80  E-value=1.6  Score=33.19  Aligned_cols=81  Identities=9%  Similarity=0.017  Sum_probs=54.7

Q ss_pred             CCCeEEEEcCCCCc---cHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh----hhhcccC
Q 025775           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE----TQMQEKA  103 (248)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~~~  103 (248)
                      ++..+|=-|.+.|-   .+..++..+. +|+.+|.+++.++.+.+.+...+  .++..+++|+.+..-.    +...+.-
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRDF   80 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            46778877876652   2344555566 89999999999998888776543  3588899999874321    1112234


Q ss_pred             CceeEEEeccc
Q 025775          104 NQADLVCCFQH  114 (248)
Q Consensus       104 ~~fD~V~~~~~  114 (248)
                      ++.|+++....
T Consensus        81 g~iDilVnnaG   91 (260)
T d1zema1          81 GKIDFLFNNAG   91 (260)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCeehhhhc
Confidence            67998876543

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.13  E-value=1.7  Score=32.66  Aligned_cols=77  Identities=10%  Similarity=-0.007  Sum_probs=51.1

Q ss_pred             CCCeEEEEcCCCCc---cHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhcccCCcee
Q 025775           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (248)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~fD  107 (248)
                      +|.++|=-|++.|-   .+..++..+. +|+.+|.+++.++...+...      .+..+++|+.+.+-.+...+.-++.|
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~------~~~~~~~Dv~~~~~v~~~~~~~g~iD   76 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKECP------GIEPVCVDLGDWDATEKALGGIGPVD   76 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHST------TCEEEECCTTCHHHHHHHHTTCCCCS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhcC------CCeEEEEeCCCHHHHHHHHHHcCCCe
Confidence            47788888877652   2344445566 89999999887776655432      26788999987554333333457899


Q ss_pred             EEEeccc
Q 025775          108 LVCCFQH  114 (248)
Q Consensus       108 ~V~~~~~  114 (248)
                      +++...+
T Consensus        77 ilVnnAg   83 (242)
T d1cyda_          77 LLVNNAA   83 (242)
T ss_dssp             EEEECCC
T ss_pred             EEEECCc
Confidence            8887543

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=83.75  E-value=0.77  Score=33.06  Aligned_cols=96  Identities=8%  Similarity=-0.128  Sum_probs=58.1

Q ss_pred             cCCCCeEEEEcCCC--CccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhc-ccCCc
Q 025775           29 SHPYVTVCDLYCGA--GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ-EKANQ  105 (248)
Q Consensus        29 ~~~~~~VLDlGcG~--G~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~  105 (248)
                      .+++.+||=-|.+.  |..+..++...-.+|+++.-+++-.+.+++.-...       .+..+  + ...+... -.++.
T Consensus        29 ~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~-------vi~~~--~-~~~~~~~~~~~~g   98 (176)
T d1xa0a2          29 TPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKE-------VLARE--D-VMAERIRPLDKQR   98 (176)
T ss_dssp             CGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSE-------EEECC------------CCSCC
T ss_pred             CCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccce-------eeecc--h-hHHHHHHHhhccC
Confidence            34688899888654  55556666554458999999988888777542211       11111  0 0111110 03468


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHhccccCCcEEEEE
Q 025775          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       106 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  145 (248)
                      +|+|+-.-.-.           .+....++|+|||.++..
T Consensus        99 vD~vid~vgg~-----------~~~~~l~~l~~~Griv~~  127 (176)
T d1xa0a2          99 WAAAVDPVGGR-----------TLATVLSRMRYGGAVAVS  127 (176)
T ss_dssp             EEEEEECSTTT-----------THHHHHHTEEEEEEEEEC
T ss_pred             cCEEEEcCCch-----------hHHHHHHHhCCCceEEEe
Confidence            99987644222           366778899999999876

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=83.21  E-value=1.6  Score=33.27  Aligned_cols=80  Identities=9%  Similarity=-0.007  Sum_probs=52.5

Q ss_pred             CCCeEEEEcCCCCc---cHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhcccC
Q 025775           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKA  103 (248)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~~  103 (248)
                      ++..+|=-|++.|-   .+..++..+. +|+.+|.+++.++.+.+.....+   .+.++++|+.+..-..    ...+..
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSPD---VISFVHCDVTKDEDVRNLVDTTIAKH   80 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTT---TEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCC---ceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            47788888877752   1234444565 89999999998888776664432   3778899998743211    111234


Q ss_pred             CceeEEEeccc
Q 025775          104 NQADLVCCFQH  114 (248)
Q Consensus       104 ~~fD~V~~~~~  114 (248)
                      ++.|+++....
T Consensus        81 g~iD~lVnnAG   91 (268)
T d2bgka1          81 GKLDIMFGNVG   91 (268)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCcceeccccc
Confidence            68898887654

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=82.57  E-value=2.4  Score=31.99  Aligned_cols=81  Identities=9%  Similarity=0.045  Sum_probs=54.0

Q ss_pred             CCCeEEEEcCCCCccH----hHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhccc
Q 025775           31 PYVTVCDLYCGAGVDV----DKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEK  102 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~----~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~  102 (248)
                      .+..+|=-|.+.| ..    ..++..+. +|+.+|.+++.++.+.+.++..+  .++.++++|+.+..-..    .....
T Consensus         9 enKvalITGas~G-IG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~   84 (251)
T d2c07a1           9 ENKVALVTGAGRG-IGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFG--YESSGYAGDVSKKEEISEVINKILTE   84 (251)
T ss_dssp             SSCEEEEESTTSH-HHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHh
Confidence            5677777786665 33    33333455 89999999999998887776543  35889999998743211    12223


Q ss_pred             CCceeEEEeccch
Q 025775          103 ANQADLVCCFQHL  115 (248)
Q Consensus       103 ~~~fD~V~~~~~l  115 (248)
                      -++.|+++.....
T Consensus        85 ~g~iDilvnnag~   97 (251)
T d2c07a1          85 HKNVDILVNNAGI   97 (251)
T ss_dssp             CSCCCEEEECCCC
T ss_pred             cCCceeeeecccc
Confidence            5789988875543

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=82.46  E-value=1.7  Score=33.24  Aligned_cols=83  Identities=12%  Similarity=-0.009  Sum_probs=55.2

Q ss_pred             CCCeEEEEcCCCC---ccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcC-CCceEEEEEcCCCCCchhh----hhccc
Q 025775           31 PYVTVCDLYCGAG---VDVDKWETALIANYIGIDVATSGIGEARDTWENQR-KNFIAEFFEADPCAENFET----QMQEK  102 (248)
Q Consensus        31 ~~~~VLDlGcG~G---~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~-~~~~~~~~~~d~~~~~~~~----~~~~~  102 (248)
                      ++.++|=-|++.|   ..+..++..+. +|+.+|.+++.++.+.+.+...+ ...++..+++|+.+..-..    ...+.
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~   82 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   82 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            4677787787665   22345555566 89999999999998888776543 2235889999998743211    11123


Q ss_pred             CCceeEEEeccc
Q 025775          103 ANQADLVCCFQH  114 (248)
Q Consensus       103 ~~~fD~V~~~~~  114 (248)
                      -++.|+++....
T Consensus        83 ~g~iDilvnnAG   94 (272)
T d1xkqa_          83 FGKIDVLVNNAG   94 (272)
T ss_dssp             HSCCCEEEECCC
T ss_pred             hCCceEEEeCCc
Confidence            467898887643

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=82.21  E-value=3.8  Score=30.91  Aligned_cols=82  Identities=9%  Similarity=0.075  Sum_probs=55.2

Q ss_pred             CCCeEEEEcCCCCc---cHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhccc-
Q 025775           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEK-  102 (248)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~-  102 (248)
                      +|.++|=-|.+.|-   .+..++..+. +|+.+|.+++.++.+.+.....+  .++.++++|+.+..-..    ...+. 
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANHF   83 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CCceEEEeeCCCHHHHHHHHHHHHHHh
Confidence            57888888877652   2344555566 89999999999988887776543  45788999998743211    11112 


Q ss_pred             CCceeEEEeccch
Q 025775          103 ANQADLVCCFQHL  115 (248)
Q Consensus       103 ~~~fD~V~~~~~l  115 (248)
                      .++.|+++.....
T Consensus        84 ~~~idilvnnAG~   96 (259)
T d2ae2a_          84 HGKLNILVNNAGI   96 (259)
T ss_dssp             TTCCCEEEECCCC
T ss_pred             CCCceEEEECCce
Confidence            3479998876543

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=81.95  E-value=8.5  Score=28.92  Aligned_cols=112  Identities=13%  Similarity=-0.003  Sum_probs=66.4

Q ss_pred             CCCeEEEEcCCCCc---cHhHHHHcCCCeEEEEeCC-hHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh----hhhccc
Q 025775           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVA-TSGIGEARDTWENQRKNFIAEFFEADPCAENFE----TQMQEK  102 (248)
Q Consensus        31 ~~~~VLDlGcG~G~---~~~~l~~~~~~~v~giDis-~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~~  102 (248)
                      +|.++|=-|++.|-   .+..++..+. +|+.+|.+ ++.++...+.....+  .++.++++|+.+..-.    +...+.
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~~~   93 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEAVKI   93 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhC--CceeeEeCCCCCHHHHHHHHHHHHHH
Confidence            47888888887762   3445555566 89999987 455565555554443  3588999999874321    112223


Q ss_pred             CCceeEEEeccchhhh----cCCHHHHH-----------HHHHHHhccccCCcEEEEE
Q 025775          103 ANQADLVCCFQHLQMC----FETEERAR-----------RLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       103 ~~~fD~V~~~~~l~~~----~~~~~~~~-----------~~l~~~~~~LkpgG~~i~~  145 (248)
                      .+..|+++........    -.+.++..           .+.+.+...|+.+|..++.
T Consensus        94 ~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i  151 (272)
T d1g0oa_          94 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILM  151 (272)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             hCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccc
Confidence            4678988775433210    01222222           3456677777777766655

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=81.84  E-value=1.8  Score=32.79  Aligned_cols=112  Identities=11%  Similarity=-0.040  Sum_probs=65.7

Q ss_pred             CCCeEEEEcCCCC---ccHhHHHHcCCCeEEE-EeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCch----hhhhccc
Q 025775           31 PYVTVCDLYCGAG---VDVDKWETALIANYIG-IDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF----ETQMQEK  102 (248)
Q Consensus        31 ~~~~VLDlGcG~G---~~~~~l~~~~~~~v~g-iDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~~  102 (248)
                      .|..||=-|.+.|   ..+..++..+. +|+. .+-++..++.+.+.....+  .++.++++|+.+..-    .....+.
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~G~-~Vvi~~~~~~~~~~~~~~~~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~~~   81 (259)
T d1ja9a_           5 AGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLG--AQGVAIQADISKPSEVVALFDKAVSH   81 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHHcC--CCceEecCCCCCHHHHHHHHHHHHHH
Confidence            4678887775554   34445555566 6665 4667777777777766544  358899999976322    1112223


Q ss_pred             CCceeEEEeccchhhhc----CCHHHHH-----------HHHHHHhccccCCcEEEEE
Q 025775          103 ANQADLVCCFQHLQMCF----ETEERAR-----------RLLQNVSSLLKPGGYFLGI  145 (248)
Q Consensus       103 ~~~fD~V~~~~~l~~~~----~~~~~~~-----------~~l~~~~~~LkpgG~~i~~  145 (248)
                      .+..|+++.........    .+.+..+           .+++.+...|+.+|..++.
T Consensus        82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii  139 (259)
T d1ja9a_          82 FGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILT  139 (259)
T ss_dssp             HSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccc
Confidence            46799888865443210    1222222           3455666667776666555

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.18  E-value=2.3  Score=31.97  Aligned_cols=79  Identities=6%  Similarity=-0.120  Sum_probs=52.3

Q ss_pred             CCCeEEEEcCCCC---ccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh----hhhcccC
Q 025775           31 PYVTVCDLYCGAG---VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE----TQMQEKA  103 (248)
Q Consensus        31 ~~~~VLDlGcG~G---~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~~~  103 (248)
                      ++.++|=-|++.|   ..+..++..+. +|+.+|.+++.++...+.+..     ++.++++|+.+..-.    +...+..
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~~   78 (244)
T d1nffa_           5 TGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELAD-----AARYVHLDVTQPAQWKAAVDTAVTAF   78 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTGG-----GEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhC-----cceEEEeecCCHHHHHHHHHHHHHHh
Confidence            4677888887776   23345555566 899999999988877665543     377899999874321    1122234


Q ss_pred             CceeEEEeccch
Q 025775          104 NQADLVCCFQHL  115 (248)
Q Consensus       104 ~~fD~V~~~~~l  115 (248)
                      +..|+++.....
T Consensus        79 g~idilinnAG~   90 (244)
T d1nffa_          79 GGLHVLVNNAGI   90 (244)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCeEEEECCcc
Confidence            678988776543

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=80.99  E-value=2.9  Score=32.05  Aligned_cols=82  Identities=7%  Similarity=-0.048  Sum_probs=53.7

Q ss_pred             CCCeEEEEcCCCC---ccHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhcccC
Q 025775           31 PYVTVCDLYCGAG---VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKA  103 (248)
Q Consensus        31 ~~~~VLDlGcG~G---~~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~~  103 (248)
                      +|.++|=-|++.|   ..+..++..+. +|+.+|.++..++.+.+...... ..++.++++|+.+..-..    ......
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~~~l~~~~~~l~~~~-g~~~~~~~~D~~~~~~v~~~~~~~~~~~  101 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQT-GNKVHAIQCDVRDPDMVQNTVSELIKVA  101 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhc-CCceEEEEecccChHHHHHHhhhhhhhc
Confidence            4678888888766   33344555565 99999999998887766554321 234778899997743211    122245


Q ss_pred             CceeEEEeccc
Q 025775          104 NQADLVCCFQH  114 (248)
Q Consensus       104 ~~fD~V~~~~~  114 (248)
                      +..|+++....
T Consensus       102 g~iDilvnnAg  112 (294)
T d1w6ua_         102 GHPNIVINNAA  112 (294)
T ss_dssp             CSCSEEEECCC
T ss_pred             cccchhhhhhh
Confidence            78898877554

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=80.84  E-value=2.9  Score=29.31  Aligned_cols=100  Identities=14%  Similarity=0.066  Sum_probs=54.9

Q ss_pred             CeEEEEcCCCCccH--hHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEE-EcCCCCCchhhhhcccCCceeEE
Q 025775           33 VTVCDLYCGAGVDV--DKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFF-EADPCAENFETQMQEKANQADLV  109 (248)
Q Consensus        33 ~~VLDlGcG~G~~~--~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~~~~~fD~V  109 (248)
                      .+|.=||+|..+.+  ..+++.+. +|+.+|.++.-++..++.-............ .......+..+.    -...|+|
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~----~~~aD~i   76 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLA----VKDADVI   76 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHH----HTTCSEE
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhH----hcCCCEE
Confidence            46777899874333  23334455 9999999998877665432110000000011 111001112111    2468988


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHhccccCCcEEEE
Q 025775          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLG  144 (248)
Q Consensus       110 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~~i~  144 (248)
                      ++.-       .......+++++...|+++-.+++
T Consensus        77 ii~v-------~~~~~~~~~~~i~~~l~~~~~iv~  104 (184)
T d1bg6a2          77 LIVV-------PAIHHASIAANIASYISEGQLIIL  104 (184)
T ss_dssp             EECS-------CGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred             EEEE-------chhHHHHHHHHhhhccCCCCEEEE
Confidence            7633       222367889999999999887654

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=80.70  E-value=2.1  Score=32.39  Aligned_cols=81  Identities=15%  Similarity=-0.048  Sum_probs=53.4

Q ss_pred             CCCeEEEEcCCCCccH----hHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhccc
Q 025775           31 PYVTVCDLYCGAGVDV----DKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEK  102 (248)
Q Consensus        31 ~~~~VLDlGcG~G~~~----~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~  102 (248)
                      +|.++|=-|.+.| ..    ..++..+. +|+.+|.+++.++.+.+.+...+  .++.++++|+.+..-..    ...+.
T Consensus        10 ~gK~alITGas~G-IG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~l~~~g--~~~~~~~~Dvs~~~~~~~~~~~~~~~   85 (255)
T d1fmca_          10 DGKCAIITGAGAG-IGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAISK   85 (255)
T ss_dssp             TTCEEEETTTTSH-HHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            5777887776654 23    23334455 89999999999988877776543  35888999998743211    11123


Q ss_pred             CCceeEEEeccch
Q 025775          103 ANQADLVCCFQHL  115 (248)
Q Consensus       103 ~~~fD~V~~~~~l  115 (248)
                      -++.|+++.....
T Consensus        86 ~g~iDilvnnAG~   98 (255)
T d1fmca_          86 LGKVDILVNNAGG   98 (255)
T ss_dssp             HSSCCEEEECCCC
T ss_pred             cCCCCEeeeCCcC
Confidence            3679988876543

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=80.30  E-value=3.8  Score=30.77  Aligned_cols=80  Identities=8%  Similarity=-0.056  Sum_probs=51.7

Q ss_pred             CCeEEEEcCCCCc---cHhHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhcccCC
Q 025775           32 YVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKAN  104 (248)
Q Consensus        32 ~~~VLDlGcG~G~---~~~~l~~~~~~~v~giDis~~~l~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~~~  104 (248)
                      ++.+|=-|++.|-   .+..++..+. +|+.+|.+++.++.+.+.+...+  .++.++++|+.+..-..    ...+.-+
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvs~~~~v~~~~~~~~~~~g   78 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAG--VEADGRTCDVRSVPEIEALVAAVVERYG   78 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            3445666665542   2234445566 89999999999998877776543  35889999998754221    1222357


Q ss_pred             ceeEEEeccc
Q 025775          105 QADLVCCFQH  114 (248)
Q Consensus       105 ~fD~V~~~~~  114 (248)
                      +.|+++....
T Consensus        79 ~iDilVnnAG   88 (257)
T d2rhca1          79 PVDVLVNNAG   88 (257)
T ss_dssp             SCSEEEECCC
T ss_pred             CCCEEEeccc
Confidence            8998887543