Citrus Sinensis ID: 025797

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
MASHSALAPSRIPAITRIPSKTTHSFPTQCSTKRLDVAEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWMKNWGLSRER
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccHHHHcccccccccccccccccccEEEEEEEccccHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHccccccccccEEEEccccEEEccEEEEEEEcccccccccccccccEEEEcccccccHHHHHHHHHccccEEEEEcccccccccEEEEEccccccccccccEEEcccccccEEEcc
Secondary Structure Prediction (SSPRO)
cccHHHHcccccccccccccccccccccHHHHHcccHHHHcccccccccccccccccccccHHHHEEccccccccccccccEEEEEEEEEEEcccHHHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHcccccccccccEEEEEccEEEEccEEEEEEccccHHHccHHHHcccEEEEccccccEHHHHcHHHHccccEEEEccccEcccEccccccHHHccccccEEEEEcccccccHHHccc
Coil and Loop (DISEMBL)
mashsalapsripaitripsktthsfptqcstkrLDVAEFAGlranagatyatgardasffDAVTAqltpkvaagsvpvkKETVAKLKVAINGFGrigrnflrcwhgrkdspldVVVVNdsggvknashLLKYDSLlgtfkadvkivdnetisvdgklikvvsnrdplqlpwaelgIDIViegtgvfvdgpgagkhiQAGAKKVIItapakgadiptyvvgvnekdydHEVANIVRSWMknwglsrer
Flexible Loop (DISEMBL)
mashsalapsripaitripsktthsfptqcstKRLDVAEFAGLRANAGATYATGARDASFFDAVTAQLtpkvaagsvpvkketVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVkivdnetisvdgklikvvsnrdplqlpWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRswmknwglsrer
Low Complexity Region (SEG)
MASHSALAPSRIPAITRIPSKTTHSFPTQCSTKRLDVAEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWMKNWGLSRER
Disordered region (IsUnstruct)
*****************************CSTKRLDVAEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWMKNWGL****
Disordered Region (DISOPRED)
***********************************************************************************VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWMKNWGLS***
Disordered Region (DISEMBL)
*********SRIPAITRIPSKTTHSFPTQCSTKRLDVAEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWMKNWGLSRER
Disordered Region (DISPRO)
************************************************************FDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWMKNWGLSR**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASHSALAPSRIPAITRIPSKTTHSFPTQCSTKRLDVAEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWMKNWGLSRER
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	248	2.2.26 [Sep-21-2011]
P12859	451	Glyceraldehyde-3-phosphat	N/A	no	0.943	0.518	0.787	1e-106
P25857	447	Glyceraldehyde-3-phosphat	yes	no	0.923	0.512	0.792	1e-105
P12860	451	Glyceraldehyde-3-phosphat	N/A	no	0.931	0.512	0.797	1e-104
P09044	438	Glyceraldehyde-3-phosphat	N/A	no	0.818	0.463	0.834	6e-96
P50362	374	Glyceraldehyde-3-phosphat	N/A	no	0.637	0.422	0.743	2e-64
P09315	403	Glyceraldehyde-3-phosphat	N/A	no	0.766	0.471	0.663	5e-64
P19866	401	Glyceraldehyde-3-phosphat	N/A	no	0.758	0.468	0.661	6e-64
P25856	396	Glyceraldehyde-3-phosphat	no	no	0.762	0.477	0.664	2e-63
P09043	392	Glyceraldehyde-3-phosphat	N/A	no	0.754	0.477	0.643	5e-62
P12858	405	Glyceraldehyde-3-phosphat	N/A	no	0.758	0.464	0.637	3e-61

>sp|P12859|G3PB_PEA Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2

 Score =  385 bits (989), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 185/235 (78%), Positives = 213/235 (90%), Gaps = 1/235 (0%)

Query: 1   MASHSALAPSRIPAITRIPSKTTHSFPTQCSTKRLDVAEFAGLRANAGATYATGARDASF 60
           MA+H+ALA +RIP  TR PSKT+HSFP+QC++KRL+V EF+GL++ +  +Y   ARD+SF
Sbjct: 1   MATHAALASTRIPTNTRFPSKTSHSFPSQCASKRLEVGEFSGLKSTSCISYVHSARDSSF 60

Query: 61  FDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120
           +D V AQLT K A GS  VK  TVAKLKVAINGFGRIGRNFLRCWHGRKDSPL+V+VVND
Sbjct: 61  YDVVAAQLTSK-ANGSTAVKGVTVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVIVVND 119

Query: 121 SGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIV 180
           SGGVKNASHLLKYDS+LGTFKA+VKI++NETI+VDGK IKVVS+RDPL+LPWAELGIDIV
Sbjct: 120 SGGVKNASHLLKYDSMLGTFKAEVKILNNETITVDGKPIKVVSSRDPLKLPWAELGIDIV 179

Query: 181 IEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIV 235
           IEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYV+GVNE+DY HEVA+I+
Sbjct: 180 IEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVIGVNEQDYGHEVADII 234

Pisum sativum (taxid: 3888)
EC: 1EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 3

>sp|P25857|G3PB_ARATH Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Arabidopsis thaliana GN=GAPB PE=1 SV=2

 Score =  380 bits (977), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/236 (79%), Positives = 208/236 (88%), Gaps = 7/236 (2%)

Query: 1   MASHSALAPSRIPAITRIPSKTT-HSFPTQCSTKRLDVAEFAGLRANAGATYATGARDAS 59
           MA+H+ALA SRIP   R+ SK+  HSFP QCS+KRL+VAEF+GLR       ++   +AS
Sbjct: 1   MATHAALAVSRIPVTQRLQSKSAIHSFPAQCSSKRLEVAEFSGLR------MSSIGGEAS 54

Query: 60  FFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119
           FFDAV AQ+ PK    S PV+ ETVAKLKVAINGFGRIGRNFLRCWHGRKDSPL+VVV+N
Sbjct: 55  FFDAVAAQIIPKAVTTSTPVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVVLN 114

Query: 120 DSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDI 179
           DSGGVKNASHLLKYDS+LGTFKA+VKIVDNETISVDGKLIKVVSNRDPL+LPWAELGIDI
Sbjct: 115 DSGGVKNASHLLKYDSMLGTFKAEVKIVDNETISVDGKLIKVVSNRDPLKLPWAELGIDI 174

Query: 180 VIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIV 235
           VIEGTGVFVDGPGAGKHIQAGA KVIITAPAKGADIPTYV+GVNE+DY H+VANI+
Sbjct: 175 VIEGTGVFVDGPGAGKHIQAGASKVIITAPAKGADIPTYVMGVNEQDYGHDVANII 230

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|P12860|G3PB_SPIOL Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Spinacia oleracea GN=GAPB PE=1 SV=1

 Score =  379 bits (972), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 189/237 (79%), Positives = 211/237 (89%), Gaps = 6/237 (2%)

Query: 1   MASHSALAPSRIPAITRIPSKTT--HSFPTQCSTKRLDVAEFAGLRANAGATYATGARDA 58
           MASH+ALAPSRIPA TR+ SK +  +SF TQCS KRLDVA+F+GLR++   T+    R+A
Sbjct: 1   MASHAALAPSRIPASTRLASKASQQYSFLTQCSFKRLDVADFSGLRSSNSVTFT---REA 57

Query: 59  SFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118
           SF D + AQLT K   G+ PV+ ETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV
Sbjct: 58  SFHDVIAAQLTTK-PTGAAPVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 116

Query: 119 NDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGID 178
           NDSGGVK+A+HLLKYDS+LGTFKADVKI+DNET S+DGK IKVVSNRDPL+LPWAELGID
Sbjct: 117 NDSGGVKSATHLLKYDSILGTFKADVKIIDNETFSIDGKPIKVVSNRDPLKLPWAELGID 176

Query: 179 IVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIV 235
           IVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKG+DIPTYVVGVNEKDY H+VANI+
Sbjct: 177 IVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGSDIPTYVVGVNEKDYGHDVANII 233

Spinacia oleracea (taxid: 3562)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|P09044|G3PB_TOBAC Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPB PE=2 SV=1

 Score =  350 bits (898), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 172/206 (83%), Positives = 189/206 (91%), Gaps = 3/206 (1%)

Query: 30  CSTKRLDVAEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKV 89
           C +K+ +VAEFAGLR++   T++   +++SFFD V+AQLTPK    S PVK ETVAKLKV
Sbjct: 1   CLSKKFEVAEFAGLRSSGCVTFSN--KESSFFDVVSAQLTPKTTR-STPVKGETVAKLKV 57

Query: 90  AINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDN 149
           AINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDS+LGTFKADVKIVDN
Sbjct: 58  AINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDN 117

Query: 150 ETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209
           ETISVDGK IKVVS+RDPL+LPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP
Sbjct: 118 ETISVDGKHIKVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 177

Query: 210 AKGADIPTYVVGVNEKDYDHEVANIV 235
           AKGADIPTYVVGVNE+DY HEVA+I+
Sbjct: 178 AKGADIPTYVVGVNEQDYSHEVADII 203

Nicotiana tabacum (taxid: 4097)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|P50362|G3PA_CHLRE Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Chlamydomonas reinhardtii GN=GAPA PE=1 SV=1

 Score =  246 bits (627), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 119/160 (74%), Positives = 134/160 (83%), Gaps = 2/160 (1%)

Query: 71  KVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHL 130
           K A   V V+ E   K++VAINGFGRIGRNFLRCWHGR+++ LDVV +NDSGGVK ASHL
Sbjct: 24  KAARAVVDVRAEK--KIRVAINGFGRIGRNFLRCWHGRQNTLLDVVAINDSGGVKQASHL 81

Query: 131 LKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDG 190
           LKYDS LGTF ADVKIVD+  ISVDGK IK+VS+RDPLQLPW E+ ID+VIEGTGVF+D 
Sbjct: 82  LKYDSTLGTFAADVKIVDDSHISVDGKQIKIVSSRDPLQLPWKEMNIDLVIEGTGVFIDK 141

Query: 191 PGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHE 230
            GAGKHIQAGA KV+ITAPAK  DIPT+VVGVNE DY HE
Sbjct: 142 VGAGKHIQAGASKVLITAPAKDKDIPTFVVGVNEGDYKHE 181

Chlamydomonas reinhardtii (taxid: 3055)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|P09315|G3PA_MAIZE Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Zea mays GN=GAPA PE=2 SV=1

 Score =  244 bits (623), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 128/193 (66%), Positives = 146/193 (75%), Gaps = 3/193 (1%)

Query: 37  VAEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGR 96
           ++EF+GLR++A       A    F  AV+ + T  V     P +  T AKLKVAINGFGR
Sbjct: 19  LSEFSGLRSSASLPMRRNATSDDFMSAVSFR-THAVGTSGGPRRAPTEAKLKVAINGFGR 77

Query: 97  IGRNFLRCWHGRKD-SPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVD 155
           IGRNFLRCWHGR D SPLDV+ +ND+GGVK ASHLLKYDS LG F ADVK V +  ISVD
Sbjct: 78  IGRNFLRCWHGRGDASPLDVIAINDTGGVKQASHLLKYDSTLGIFDADVKPVGDNAISVD 137

Query: 156 GKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADI 215
           GK+IKVVS+R+P  LPW ELGID+VIEGTGVFVD  GAGKHIQAGAKKV+ITAP KG DI
Sbjct: 138 GKVIKVVSDRNPSNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKG-DI 196

Query: 216 PTYVVGVNEKDYD 228
           PTYVVGVN   Y+
Sbjct: 197 PTYVVGVNADQYN 209

Zea mays (taxid: 4577)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|P19866|G3PA_SPIOL Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Spinacia oleracea GN=GAPA PE=1 SV=2

 Score =  243 bits (621), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 127/192 (66%), Positives = 147/192 (76%), Gaps = 4/192 (2%)

Query: 38  AEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRI 97
           +EF+GL  ++      G+ D   F  V+ Q T  V            AKLKVAINGFGRI
Sbjct: 21  SEFSGLHTSSLPFGRKGSDDLMAF--VSFQ-TNAVGGKRSSQNGVVEAKLKVAINGFGRI 77

Query: 98  GRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGK 157
           GRNFLRCWHGRKDSPLDVVV+ND+GGVK ASHLLKYDS+LGTF ADVK   +  ISVDGK
Sbjct: 78  GRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGK 137

Query: 158 LIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPT 217
           +IKVVS+R+P+ LPW ++GID+VIEGTGVFVD  GAGKH+QAGAKKV+ITAP KG DIPT
Sbjct: 138 VIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGKG-DIPT 196

Query: 218 YVVGVNEKDYDH 229
           YVVGVNE+ Y H
Sbjct: 197 YVVGVNEEGYTH 208

Spinacia oleracea (taxid: 3562)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|P25856|G3PA_ARATH Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Arabidopsis thaliana GN=GAPA PE=1 SV=3

 Score =  242 bits (618), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 129/194 (66%), Positives = 149/194 (76%), Gaps = 5/194 (2%)

Query: 39  EFAGLRANAGATYATGARDAS--FFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGR 96
           EF+GLR+++ A+   G + +S  F   V+ Q +   ++G    K  T AKLKVAINGFGR
Sbjct: 14  EFSGLRSSS-ASLPFGKKLSSDEFVSIVSFQTSAMGSSGGYR-KGVTEAKLKVAINGFGR 71

Query: 97  IGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDG 156
           IGRNFLRCWHGRKDSPLD++ +ND+GGVK ASHLLKYDS LG F ADVK      ISVDG
Sbjct: 72  IGRNFLRCWHGRKDSPLDIIAINDTGGVKQASHLLKYDSTLGIFDADVKPSGETAISVDG 131

Query: 157 KLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIP 216
           K+I+VVSNR+P  LPW ELGIDIVIEGTGVFVD  GAGKHI+AGAKKVIITAP KG DIP
Sbjct: 132 KIIQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKHIEAGAKKVIITAPGKG-DIP 190

Query: 217 TYVVGVNEKDYDHE 230
           TYVVGVN   Y H+
Sbjct: 191 TYVVGVNADAYSHD 204

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|P09043|G3PA_TOBAC Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPA PE=2 SV=1

 Score =  237 bits (605), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 123/191 (64%), Positives = 143/191 (74%), Gaps = 4/191 (2%)

Query: 38  AEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRI 97
           +EF+GLR ++   +     D      V  Q +  V  G    +    AKLKVAINGFGRI
Sbjct: 12  SEFSGLRTSSAIPFGRKTND-DLLSVVAFQTS--VIGGGNSKRGVVEAKLKVAINGFGRI 68

Query: 98  GRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGK 157
           GRNFLRCWHGRKDSPLDV+ +ND+GGVK ASHLLKYDS LG F ADVK V  + ISVDGK
Sbjct: 69  GRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDSTLGIFDADVKPVGTDGISVDGK 128

Query: 158 LIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPT 217
           +I+VVS+R+P+ LPW +LGID+VIEGTGVFVD  GAGKHIQAGAKKV+ITAP KG DIPT
Sbjct: 129 VIQVVSDRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKG-DIPT 187

Query: 218 YVVGVNEKDYD 228
           YVVGVN   Y+
Sbjct: 188 YVVGVNADLYN 198

Nicotiana tabacum (taxid: 4097)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|P12858|G3PA_PEA Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Pisum sativum GN=GAPA PE=2 SV=2

 Score =  234 bits (598), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 125/196 (63%), Positives = 144/196 (73%), Gaps = 8/196 (4%)

Query: 38  AEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVA----KLKVAING 93
           +EF+GLR ++     +      F   VT Q     A GS    K+++     +LKVAING
Sbjct: 21  SEFSGLRNSSRHLPFSRKSSDDFHSLVTFQTN---AVGSSGGHKKSLVVEAKQLKVAING 77

Query: 94  FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETIS 153
           FGRIGRNFLRCWHGRKDSPLDV+ +ND+GGVK ASHLLKYDS LG F ADVK V  + IS
Sbjct: 78  FGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDSTLGIFDADVKPVGTDGIS 137

Query: 154 VDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGA 213
           VDGK+IKVVS+R+P  LPW ELGID+VIEGTGVFVD  GAG+HI AGAKKV+ITAP KG 
Sbjct: 138 VDGKVIKVVSDRNPANLPWKELGIDLVIEGTGVFVDREGAGRHITAGAKKVLITAPGKG- 196

Query: 214 DIPTYVVGVNEKDYDH 229
           DIPTYVVGVN   Y H
Sbjct: 197 DIPTYVVGVNADAYTH 212

Pisum sativum (taxid: 3888)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
255539282	458	glyceraldehyde 3-phosphate dehydrogenase	0.943	0.510	0.859	1e-114
224086078	452	predicted protein [Populus trichocarpa]	0.943	0.517	0.846	1e-111
381393062	452	glyceraldehyde-3-phosphate dehydrogenase	0.943	0.517	0.825	1e-109
358248146	451	uncharacterized protein LOC100806482 [Gl	0.943	0.518	0.812	1e-109
327198779	450	glyceraldehyde-3-phosphate dehydrogenase	0.939	0.517	0.821	1e-108
351726690	451	glyceraldehyde-3-phosphate dehydrogenase	0.943	0.518	0.808	1e-108
224061855	440	predicted protein [Populus trichocarpa]	0.899	0.506	0.861	1e-108
255641007	452	unknown [Glycine max]	0.947	0.519	0.795	1e-108
449455619	451	PREDICTED: glyceraldehyde-3-phosphate de	0.939	0.516	0.834	1e-107
147795191	453	hypothetical protein VITISV_021576 [Viti	0.943	0.516	0.826	1e-107

>gi|255539282|ref|XP_002510706.1| glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis] gi|223551407|gb|EEF52893.1| glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 202/235 (85%), Positives = 217/235 (92%), Gaps = 1/235 (0%)

Query: 1   MASHSALAPSRIPAITRIPSKTTHSFPTQCSTKRLDVAEFAGLRANAGATYATGARDASF 60
           MA+H+ALAPSRIPA TR+PSK+ HSFPTQCS+KRL+VAEF+GLRA++  TYA  A +ASF
Sbjct: 1   MATHAALAPSRIPASTRLPSKSAHSFPTQCSSKRLEVAEFSGLRASSCMTYAKNASEASF 60

Query: 61  FDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120
           FD V AQ+ PKVA  S P + ETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDV+VVND
Sbjct: 61  FDLVAAQMAPKVAT-STPTRAETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVIVVND 119

Query: 121 SGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIV 180
           SGGVKNASHLLKYDS+LGTFKADVKIVDN TISVDGK IKVVSNRDPL+LPWAELGIDIV
Sbjct: 120 SGGVKNASHLLKYDSMLGTFKADVKIVDNTTISVDGKPIKVVSNRDPLKLPWAELGIDIV 179

Query: 181 IEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIV 235
           IEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDY HEVANIV
Sbjct: 180 IEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYSHEVANIV 234

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224086078|ref|XP_002307806.1| predicted protein [Populus trichocarpa] gi|222857255|gb|EEE94802.1| predicted protein [Populus trichocarpa]

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 199/235 (84%), Positives = 214/235 (91%), Gaps = 1/235 (0%)

Query: 1   MASHSALAPSRIPAITRIPSKTTHSFPTQCSTKRLDVAEFAGLRANAGATYATGARDASF 60
           MA+H+ALA SRIPA TR+PSK  HSFPTQ S KRL+VAEF+GLRA++  TYA  A + SF
Sbjct: 1   MATHAALASSRIPANTRLPSKINHSFPTQSSLKRLEVAEFSGLRASSCVTYAKNASEGSF 60

Query: 61  FDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120
           FD V +QL PKVA  S PV+ ETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDV+VVND
Sbjct: 61  FDVVASQLAPKVAV-STPVRAETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVIVVND 119

Query: 121 SGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIV 180
           SGGVKNASHLLKYDS+LGTFKA+VKIVDNETISVDGK IKVVSNRDPL+LPWAELGIDIV
Sbjct: 120 SGGVKNASHLLKYDSMLGTFKAEVKIVDNETISVDGKPIKVVSNRDPLKLPWAELGIDIV 179

Query: 181 IEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIV 235
           IEGTGVFVDGPGAGKHIQAGA KVIITAPAKGADIPTYVVGVNEKDYDHEVANI+
Sbjct: 180 IEGTGVFVDGPGAGKHIQAGATKVIITAPAKGADIPTYVVGVNEKDYDHEVANII 234

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|381393062|gb|AFG28405.1| glyceraldehyde-3-phosphate dehydrogenase B [Pyrus x bretschneideri]

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 194/235 (82%), Positives = 216/235 (91%), Gaps = 1/235 (0%)

Query: 1   MASHSALAPSRIPAITRIPSKTTHSFPTQCSTKRLDVAEFAGLRANAGATYATGARDASF 60
           MASH+ALA SR+PA TR+PSK +HSFPTQC +KRL+V EF+GLR+++  TYA+  R+ SF
Sbjct: 1   MASHAALASSRVPANTRLPSKPSHSFPTQCFSKRLEVGEFSGLRSSSCVTYASNGREQSF 60

Query: 61  FDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120
           FD V AQLTPK  AG  PV+ ETVAKLKVAINGFGRIGRNFLRCWHGRKDSPL+V+VVND
Sbjct: 61  FDTVAAQLTPK-TAGPTPVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVIVVND 119

Query: 121 SGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIV 180
           SGGVKNASHLLKYDS+LGTFKADVKIVDNETISVDGK +KVVS+RDPL+LPWAE+GIDIV
Sbjct: 120 SGGVKNASHLLKYDSMLGTFKADVKIVDNETISVDGKPVKVVSSRDPLKLPWAEMGIDIV 179

Query: 181 IEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIV 235
           IEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPT+VVGVNEKDY H+VANIV
Sbjct: 180 IEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTHVVGVNEKDYGHDVANIV 234

Source: Pyrus x bretschneideri

Species: Pyrus x bretschneideri

Genus: Pyrus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248146|ref|NP_001240080.1| uncharacterized protein LOC100806482 [Glycine max] gi|255636463|gb|ACU18570.1| unknown [Glycine max]

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/235 (81%), Positives = 214/235 (91%), Gaps = 1/235 (0%)

Query: 1   MASHSALAPSRIPAITRIPSKTTHSFPTQCSTKRLDVAEFAGLRANAGATYATGARDASF 60
           MA+H+ALA +RIP+ TR PSK +HSFPTQC+ KRL+V EF+GLR+ +  TYA  AR++SF
Sbjct: 1   MATHAALASTRIPSNTRFPSKASHSFPTQCALKRLEVTEFSGLRSTSCVTYANSARESSF 60

Query: 61  FDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120
           FD V +QLTPK   GS PV+ ETVAKLKVAINGFGRIGRNFLRCWHGRKDSPL+VVVVND
Sbjct: 61  FDLVASQLTPKTN-GSTPVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVVVND 119

Query: 121 SGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIV 180
           SGGVKNASHLLKYDS+LGTFKADVKI+DNETI+VDGK IKVVS+RDPL+LPWAELGIDIV
Sbjct: 120 SGGVKNASHLLKYDSMLGTFKADVKILDNETITVDGKSIKVVSSRDPLKLPWAELGIDIV 179

Query: 181 IEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIV 235
           IEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNE DY HE++NI+
Sbjct: 180 IEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEGDYTHEISNII 234

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|327198779|emb|CBL43264.1| glyceraldehyde-3-phosphate dehydrogenase [Solanum tuberosum]

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/235 (82%), Positives = 213/235 (90%), Gaps = 2/235 (0%)

Query: 1   MASHSALAPSRIPAITRIPSKTTHSFPTQCSTKRLDVAEFAGLRANAGATYATGARDASF 60
           MASH+ALAPSRIP  TR+ SK ++SFPTQC +K+ +VAEF+GLR++   T+    +++SF
Sbjct: 1   MASHAALAPSRIPTSTRLLSKNSYSFPTQCFSKKFEVAEFSGLRSSGCVTFCN--KESSF 58

Query: 61  FDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120
           FD V+AQLTPK    + PVK ETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND
Sbjct: 59  FDVVSAQLTPKTTGSAGPVKGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 118

Query: 121 SGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIV 180
           SGGVKNASHLLKYDS+LGTFKADVKIVDNETISVDGK IKVVS+RDPL+LPWAELGIDIV
Sbjct: 119 SGGVKNASHLLKYDSMLGTFKADVKIVDNETISVDGKNIKVVSSRDPLKLPWAELGIDIV 178

Query: 181 IEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIV 235
           IEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNE+DY HEVANIV
Sbjct: 179 IEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEQDYSHEVANIV 233

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726690|ref|NP_001237135.1| glyceraldehyde-3-phosphate dehydrogenase B subunit [Glycine max] gi|77540212|gb|ABA86964.1| glyceraldehyde-3-phosphate dehydrogenase B subunit [Glycine max]

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 190/235 (80%), Positives = 214/235 (91%), Gaps = 1/235 (0%)

Query: 1   MASHSALAPSRIPAITRIPSKTTHSFPTQCSTKRLDVAEFAGLRANAGATYATGARDASF 60
           MA+H+ALA +RIP+ TR PSK +HSFPTQC+ KRL+V EF+GLR+ +  TYA  AR++SF
Sbjct: 1   MATHAALASTRIPSNTRFPSKASHSFPTQCALKRLEVTEFSGLRSTSCVTYANSARESSF 60

Query: 61  FDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120
           FD V +QLTPK   GS PV+ ETVAKLKVAINGFGRIGRNFLRCWHGRKDSPL+VVVVND
Sbjct: 61  FDLVASQLTPKTN-GSTPVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVVVND 119

Query: 121 SGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIV 180
           SGGVKNASHLLKYDS+LGTFKADVKI+DNETI+VDGK IKVVS+RDPL+LPWAELGIDIV
Sbjct: 120 SGGVKNASHLLKYDSMLGTFKADVKILDNETITVDGKPIKVVSSRDPLKLPWAELGIDIV 179

Query: 181 IEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIV 235
           IEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNE DY H+++NI+
Sbjct: 180 IEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEGDYTHQISNII 234

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061855|ref|XP_002300632.1| predicted protein [Populus trichocarpa] gi|222842358|gb|EEE79905.1| predicted protein [Populus trichocarpa]

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/224 (86%), Positives = 208/224 (92%), Gaps = 1/224 (0%)

Query: 12  IPAITRIPSKTTHSFPTQCSTKRLDVAEFAGLRANAGATYATGARDASFFDAVTAQLTPK 71
           IPA TR+PSKT HSFPTQCS+KRL+VAEF+GLRA++  TYA  A + SFFD V +QL PK
Sbjct: 1   IPANTRLPSKTNHSFPTQCSSKRLEVAEFSGLRASSCVTYAKNASEGSFFDMVASQLAPK 60

Query: 72  VAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLL 131
           VA  S PV+ ETV+KLKVAINGFGRIGRNFLRCWHGRKDSPLDV+VVNDSGGVKNASHLL
Sbjct: 61  VAV-STPVRAETVSKLKVAINGFGRIGRNFLRCWHGRKDSPLDVIVVNDSGGVKNASHLL 119

Query: 132 KYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGP 191
           KYDS+LGTFKA+VKIVDNETISVDGK IKVVSNRDPL+LPWAELGIDIVIEGTGVFVDGP
Sbjct: 120 KYDSMLGTFKAEVKIVDNETISVDGKPIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGP 179

Query: 192 GAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIV 235
           GAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEV+NIV
Sbjct: 180 GAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVSNIV 223

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255641007|gb|ACU20783.1| unknown [Glycine max]

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 187/235 (79%), Positives = 213/235 (90%)

Query: 1   MASHSALAPSRIPAITRIPSKTTHSFPTQCSTKRLDVAEFAGLRANAGATYATGARDASF 60
           MA+H+ALA +RIP  T+ PSK +HSFPTQC++KRL+V EF+GLR+ +  TYA  AR++SF
Sbjct: 1   MATHAALASTRIPTNTKFPSKASHSFPTQCASKRLEVTEFSGLRSTSCVTYANDARESSF 60

Query: 61  FDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120
           FD V +QLTPK    S PV+ ETVAKLKVAINGFGRIG NFLRCWHGRKDSPL+VVVVND
Sbjct: 61  FDLVASQLTPKTNGSSTPVRGETVAKLKVAINGFGRIGGNFLRCWHGRKDSPLEVVVVND 120

Query: 121 SGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIV 180
           SGGVKNASHLLKYDS+LGTFKADVKI+DNETI+VDGK IKVVS+RDPL+LPWAELGIDIV
Sbjct: 121 SGGVKNASHLLKYDSMLGTFKADVKILDNETITVDGKPIKVVSSRDPLKLPWAELGIDIV 180

Query: 181 IEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIV 235
           IEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNE+DY H+++NI+
Sbjct: 181 IEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNERDYTHQISNII 235

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455619|ref|XP_004145550.1| PREDICTED: glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic-like [Cucumis sativus] gi|449485095|ref|XP_004157068.1| PREDICTED: glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic-like [Cucumis sativus]

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 196/235 (83%), Positives = 215/235 (91%), Gaps = 2/235 (0%)

Query: 1   MASHSALAPSRIPAITRIPSKTTHSFPTQCSTKRLDVAEFAGLRANAGATYATGARDASF 60
           MA+H+ALA +RIP  TR+PSKT++SFPT+CS+KRL+VAEF GLR+ A  + +   R+ SF
Sbjct: 1   MATHAALASTRIPTNTRLPSKTSYSFPTRCSSKRLNVAEFNGLRS-ASLSSSNNGREGSF 59

Query: 61  FDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120
           FDAV AQLTPK A  S PV+ ETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND
Sbjct: 60  FDAVAAQLTPK-AVASTPVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 118

Query: 121 SGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIV 180
           SGGVKNASHLLKYDS+LGTFKA+VKIVDNETISVDGK IKVVS+RDPL+LPWAELGIDIV
Sbjct: 119 SGGVKNASHLLKYDSMLGTFKAEVKIVDNETISVDGKPIKVVSSRDPLKLPWAELGIDIV 178

Query: 181 IEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIV 235
           IEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDY H+VANIV
Sbjct: 179 IEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYYHDVANIV 233

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147795191|emb|CAN69459.1| hypothetical protein VITISV_021576 [Vitis vinifera]

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 195/236 (82%), Positives = 211/236 (89%), Gaps = 2/236 (0%)

Query: 1   MASHSALAPSRIPAI-TRIPSKTTHSFPTQCSTKRLDVAEFAGLRANAGATYATGARDAS 59
           MASH+ALA SRIP   TR+PSK +HSFPTQ   KRL+VAEF+GLR+    T+A  AR+ S
Sbjct: 1   MASHAALASSRIPTTNTRLPSKASHSFPTQFFAKRLEVAEFSGLRSGGCVTFAKNAREPS 60

Query: 60  FFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119
           FFD V +QLTPK A G  PV+ ETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDV+VVN
Sbjct: 61  FFDVVASQLTPK-AGGPAPVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVIVVN 119

Query: 120 DSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDI 179
           DSGGVKNASHLLKYDS+LGTFKA+VKIVDNETISVDGK IKVVS+RDPL+LPWAELGIDI
Sbjct: 120 DSGGVKNASHLLKYDSMLGTFKAEVKIVDNETISVDGKPIKVVSSRDPLKLPWAELGIDI 179

Query: 180 VIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIV 235
           VIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNE DY HEV+NIV
Sbjct: 180 VIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEGDYSHEVSNIV 235

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
TAIR|locus:2009864	447	GAPB "glyceraldehyde-3-phospha	0.923	0.512	0.796	4.7e-96
TAIR|locus:2010361	399	GAPA-2 "glyceraldehyde 3-phosp	0.770	0.478	0.652	1e-61
TAIR|locus:2090802	396	GAPA "glyceraldehyde 3-phospha	0.762	0.477	0.664	1.2e-60
UNIPROTKB|Q829W3	335	gap2 "Glyceraldehyde-3-phospha	0.588	0.435	0.510	3.6e-34
TAIR|locus:2032810	420	GAPCP-2 "glyceraldehyde-3-phos	0.854	0.504	0.4	4.1e-33
TIGR_CMR|CHY_0280	335	CHY_0280 "glyceraldehyde-3-pho	0.576	0.426	0.516	8.5e-33
TAIR|locus:2206435	422	GAPCP-1 "glyceraldehyde-3-phos	0.870	0.511	0.394	1.1e-32
TIGR_CMR|BA_5369	334	BA_5369 "glyceraldehyde 3-phos	0.580	0.431	0.479	4.2e-31
UNIPROTKB|Q82IZ2	334	gap1 "Glyceraldehyde-3-phospha	0.588	0.437	0.469	5.4e-31
CGD|CAL0005657	335	TDH3 [Candida albicans (taxid:	0.548	0.405	0.521	1.8e-30

TAIR|locus:2009864 GAPB "glyceraldehyde-3-phosphate dehydrogenase B subunit" [Arabidopsis thaliana (taxid:3702)]

 Score = 955 (341.2 bits), Expect = 4.7e-96, P = 4.7e-96
 Identities = 188/236 (79%), Positives = 209/236 (88%)

Query:     1 MASHSALAPSRIPAITRIPSKTT-HSFPTQCSTKRLDVAEFAGLRANAGATYATGARDAS 59
             MA+H+ALA SRIP   R+ SK+  HSFP QCS+KRL+VAEF+GLR ++      G  +AS
Sbjct:     1 MATHAALAVSRIPVTQRLQSKSAIHSFPAQCSSKRLEVAEFSGLRMSS-----IGG-EAS 54

Query:    60 FFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119
             FFDAV AQ+ PK    S PV+ ETVAKLKVAINGFGRIGRNFLRCWHGRKDSPL+VVV+N
Sbjct:    55 FFDAVAAQIIPKAVTTSTPVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVVLN 114

Query:   120 DSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDI 179
             DSGGVKNASHLLKYDS+LGTFKA+VKIVDNETISVDGKLIKVVSNRDPL+LPWAELGIDI
Sbjct:   115 DSGGVKNASHLLKYDSMLGTFKAEVKIVDNETISVDGKLIKVVSNRDPLKLPWAELGIDI 174

Query:   180 VIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIV 235
             VIEGTGVFVDGPGAGKHIQAGA KVIITAPAKGADIPTYV+GVNE+DY H+VANI+
Sbjct:   175 VIEGTGVFVDGPGAGKHIQAGASKVIITAPAKGADIPTYVMGVNEQDYGHDVANII 230

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006096 "glycolysis" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;ISS;IDA

GO:0016620 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0047100 "glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity" evidence=ISS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009416 "response to light stimulus" evidence=IEP;RCA

GO:0009744 "response to sucrose stimulus" evidence=IEP;RCA

GO:0019253 "reductive pentose-phosphate cycle" evidence=NAS

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0004365 "glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity" evidence=NAS

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0010319 "stromule" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009749 "response to glucose stimulus" evidence=RCA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0010304 "PSII associated light-harvesting complex II catabolic process" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

TAIR|locus:2010361 GAPA-2 "glyceraldehyde 3-phosphate dehydrogenase A subunit 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
 Identities = 126/193 (65%), Positives = 148/193 (76%)

Query:    38 AEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRI 97
             +EF+GLR ++   +A  +    F   V+ Q +   + G    K  T AK+KVAINGFGRI
Sbjct:    17 SEFSGLRNSSALPFAKRSSSDEFVSFVSFQTSAMRSNGGYR-KGVTEAKIKVAINGFGRI 75

Query:    98 GRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGK 157
             GRNFLRCWHGRKDSPLDVVV+ND+GGVK ASHLLKYDS LG F ADVK   +  +SVDGK
Sbjct:    76 GRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSTLGIFDADVKPSGDSALSVDGK 135

Query:   158 LIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPT 217
             +IK+VS+R+P  LPW ELGID+VIEGTGVFVD  GAGKH+QAGAKKV+ITAP KG DIPT
Sbjct:   136 IIKIVSDRNPSNLPWGELGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGKG-DIPT 194

Query:   218 YVVGVNEKDYDHE 230
             YVVGVN + Y HE
Sbjct:   195 YVVGVNAELYSHE 207

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006096 "glycolysis" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016620 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0015979 "photosynthesis" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2090802 GAPA "glyceraldehyde 3-phosphate dehydrogenase A subunit" [Arabidopsis thaliana (taxid:3702)]

 Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
 Identities = 129/194 (66%), Positives = 149/194 (76%)

Query:    39 EFAGLRANAGATYATGARDAS--FFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGR 96
             EF+GLR+++ A+   G + +S  F   V+ Q +   ++G    K  T AKLKVAINGFGR
Sbjct:    14 EFSGLRSSS-ASLPFGKKLSSDEFVSIVSFQTSAMGSSGGYR-KGVTEAKLKVAINGFGR 71

Query:    97 IGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDG 156
             IGRNFLRCWHGRKDSPLD++ +ND+GGVK ASHLLKYDS LG F ADVK      ISVDG
Sbjct:    72 IGRNFLRCWHGRKDSPLDIIAINDTGGVKQASHLLKYDSTLGIFDADVKPSGETAISVDG 131

Query:   157 KLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIP 216
             K+I+VVSNR+P  LPW ELGIDIVIEGTGVFVD  GAGKHI+AGAKKVIITAP KG DIP
Sbjct:   132 KIIQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKHIEAGAKKVIITAPGKG-DIP 190

Query:   217 TYVVGVNEKDYDHE 230
             TYVVGVN   Y H+
Sbjct:   191 TYVVGVNADAYSHD 204

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006096 "glycolysis" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016620 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009570 "chloroplast stroma" evidence=ISS;IDA

GO:0009744 "response to sucrose stimulus" evidence=IEP;RCA

GO:0019253 "reductive pentose-phosphate cycle" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0010319 "stromule" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009749 "response to glucose stimulus" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

UNIPROTKB|Q829W3 gap2 "Glyceraldehyde-3-phosphate dehydrogenase" [Streptomyces avermitilis MA-4680 (taxid:227882)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 76/149 (51%), Positives = 99/149 (66%)

Query:    87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
             ++V INGFGRIGRN+ R     + + +++V VND G     +HLLKYD++LG  KA+V  
Sbjct:     3 IRVGINGFGRIGRNYFRALL-EQGADIEIVAVNDLGDTATTAHLLKYDTILGRLKAEVTH 61

Query:   147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
                +TI+VDGK IKV S R+P  +PW EL +DIVIE TG+F     A KHI  GAKKV+I
Sbjct:    62 TA-DTITVDGKTIKVFSERNPADIPWGELNVDIVIESTGIFTKKADAEKHIAGGAKKVLI 120

Query:   207 TAPAKGADIPTYVVGVNEKDYDHEVANIV 235
             +APA   DI T V+GVNE  YD    N++
Sbjct:   121 SAPASDEDI-TIVLGVNEDKYDPAKHNVI 148

GO:0004365 "glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity" evidence=IDA

GO:0051287 "NAD binding" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IDA

TAIR|locus:2032810 GAPCP-2 "glyceraldehyde-3-phosphate dehydrogenase of plastid 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 90/225 (40%), Positives = 126/225 (56%)

Query:     5 SALAPSRIPAITRIPSKT-THSFPTQCSTKRLDVAEFAGLRANAGATYATGARDASFFDA 63
             SA   +  P +   PS +  HS   Q  T  L  +        +GA  +TG  +A     
Sbjct:     9 SAATSAAAPRVELYPSSSYNHS---QV-TSSLGFSHSLTSSRFSGAAVSTGKYNAKRVQP 64

Query:    64 VTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG- 122
             + A  T   A  +V  +  +  K KV INGFGRIGR  LR    R D  ++VV VND   
Sbjct:    65 IKATATE--APPAVH-RSRSSGKTKVGINGFGRIGRLVLRIATFRDD--IEVVAVNDPFI 119

Query:   123 GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIE 182
               K  +++ KYDS  G +K  + ++D+ T+ ++GK +KVVS RDP ++PWA+LG + V+E
Sbjct:   120 DAKYMAYMFKYDSTHGNYKGTINVIDDSTLEINGKQVKVVSKRDPAEIPWADLGAEYVVE 179

Query:   183 GTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDY 227
              +GVF     A  H++ GAKKVII+AP+  AD P +VVGVNEK Y
Sbjct:   180 SSGVFTTVGQASSHLKGGAKKVIISAPS--ADAPMFVVGVNEKTY 222

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006096 "glycolysis" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016620 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009536 "plastid" evidence=ISS;IDA

GO:0004365 "glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity" evidence=IMP

GO:0005975 "carbohydrate metabolic process" evidence=IMP

GO:0080022 "primary root development" evidence=IMP

GO:0080144 "amino acid homeostasis" evidence=IMP

TIGR_CMR|CHY_0280 CHY_0280 "glyceraldehyde-3-phosphate dehydrogenase, type I" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 78/151 (51%), Positives = 99/151 (65%)

Query:    87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
             +KV INGFGRIGRN  R      +  +++V VND    K  +HLLKYDS+ G F ADV+ 
Sbjct:     3 VKVGINGFGRIGRNMFRA--ALNNPEIEIVAVNDLTDAKTLAHLLKYDSVHGIFAADVEA 60

Query:   147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
              D + I V+GK +KV + +DP  LPW ELG++IVIE TG F     A KH++AGAKKVII
Sbjct:    61 KD-DAIVVNGKEVKVYAEKDPANLPWKELGVEIVIESTGKFTKKADAVKHLEAGAKKVII 119

Query:   207 TAPAKGADIPTYVVGVNEKDYD----HEVAN 233
             +APA   DI T V+GVNE  YD    H ++N
Sbjct:   120 SAPATDEDI-TIVMGVNEDKYDPANHHVISN 149

GO:0006094 "gluconeogenesis" evidence=ISS

GO:0006096 "glycolysis" evidence=ISS

GO:0019682 "glyceraldehyde-3-phosphate metabolic process" evidence=ISS

TAIR|locus:2206435 GAPCP-1 "glyceraldehyde-3-phosphate dehydrogenase of plastid 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 90/228 (39%), Positives = 127/228 (55%)

Query:     5 SALAPSRIPAITRIPSKTTHSFPTQCSTKRLDVAEFAGLRANAGATYATGARDASFFDAV 64
             S+L  S        P     S P    +K L    F+  R    + +++G   +S  +  
Sbjct:     4 SSLLRSAASYTVAAPRPDFFSSPASDHSKVLSSLGFS--RNLKPSRFSSGI-SSSLQNGN 60

Query:    65 TAQLTP-KVAAGSVP--VKKETVA-KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120
                + P K  A  VP  V++ + + K KV INGFGRIGR  LR    R D  ++VV VND
Sbjct:    61 ARSVQPIKATATEVPSAVRRSSSSGKTKVGINGFGRIGRLVLRIATSRDD--IEVVAVND 118

Query:   121 SG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDI 179
                  K  +++LKYDS  G FK  + ++D+ T+ ++GK + VVS RDP ++PWA+LG D 
Sbjct:   119 PFIDAKYMAYMLKYDSTHGNFKGSINVIDDSTLEINGKKVNVVSKRDPSEIPWADLGADY 178

Query:   180 VIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDY 227
             V+E +GVF     A  H++ GAKKVII+AP+  AD P +VVGVNE  Y
Sbjct:   179 VVESSGVFTTLSKAASHLKGGAKKVIISAPS--ADAPMFVVGVNEHTY 224

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006096 "glycolysis" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016620 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009536 "plastid" evidence=ISS;IDA

GO:0016020 "membrane" evidence=IDA

GO:0004365 "glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity" evidence=IMP

GO:0005975 "carbohydrate metabolic process" evidence=IMP

GO:0080022 "primary root development" evidence=IMP

GO:0080144 "amino acid homeostasis" evidence=IMP

GO:0005507 "copper ion binding" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0009555 "pollen development" evidence=IMP

GO:0048658 "tapetal layer development" evidence=IMP

TIGR_CMR|BA_5369 BA_5369 "glyceraldehyde 3-phosphate dehydrogenase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 71/148 (47%), Positives = 96/148 (64%)

Query:    88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIV 147
             K+ INGFGRIGRN  R      +S ++VV +ND    K  +HLLKYD++ GT  A+V   
Sbjct:     3 KIGINGFGRIGRNVFRA--ALNNSEVEVVAINDLTDAKTLAHLLKYDTVHGTLNAEVSAN 60

Query:   148 DNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207
             +N +I V+GK IKV++ RDP QLPW++ G+++V+E TG F     A KH+    KKVII+
Sbjct:    61 EN-SIVVNGKEIKVIAERDPAQLPWSDYGVEVVVESTGRFTKKSDAEKHLGGSVKKVIIS 119

Query:   208 APAKGADIPTYVVGVNEKDYDHEVANIV 235
             APA   DI T V+GVN + YD    N+V
Sbjct:   120 APASDEDI-TVVMGVNHEQYDAANHNVV 146

GO:0004365 "glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity" evidence=ISS

GO:0006096 "glycolysis" evidence=ISS

UNIPROTKB|Q82IZ2 gap1 "Glyceraldehyde-3-phosphate dehydrogenase" [Streptomyces avermitilis MA-4680 (taxid:227882)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 70/149 (46%), Positives = 92/149 (61%)

Query:    87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
             ++V INGFGRIGRN  R     + + L++V VND G V   +HLL YDS+LG F  +V  
Sbjct:     3 VRVGINGFGRIGRNVFRA-AATRGADLEIVAVNDLGDVATMAHLLAYDSILGRFPEEVT- 60

Query:   147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
              +   I      +KV++ RDP  LPW +LG+D+VIE TG+F D   A  H+  GAKKVII
Sbjct:    61 AEPGAIRAGDTTVKVLAERDPAALPWGDLGVDVVIESTGIFTDAAKARAHVDGGAKKVII 120

Query:   207 TAPAKGADIPTYVVGVNEKDYDHEVANIV 235
              APA   D+ T V+GVN+  YD E   I+
Sbjct:   121 AAPASNEDV-TVVLGVNQDAYDPERHTII 148

GO:0004365 "glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity" evidence=IDA

GO:0051287 "NAD binding" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IDA

CGD|CAL0005657 TDH3 [Candida albicans (taxid:5476)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 74/142 (52%), Positives = 93/142 (65%)

Query:    87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKN-ASHLLKYDSLLGTFKADVK 145
             +K+ INGFGRIGR  LR   GRKD  ++VV VND     + A+++ KYDS  G +K +V 
Sbjct:     3 IKIGINGFGRIGRLVLRVALGRKD--IEVVAVNDPFIAPDYAAYMFKYDSTHGRYKGEVT 60

Query:   146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
                ++ + +DG  IKV   RDP  +PW + G+D VIE TGVF    GA KHI AGAKKVI
Sbjct:    61 ASGDDLV-IDGHKIKVFQERDPANIPWGKSGVDYVIESTGVFTKLEGAQKHIDAGAKKVI 119

Query:   206 ITAPAKGADIPTYVVGVNEKDY 227
             ITAP+  AD P +VVGVNE  Y
Sbjct:   120 ITAPS--ADAPMFVVGVNEDKY 139

GO:0030446 "hyphal cell wall" evidence=IDA

GO:0030445 "yeast-form cell wall" evidence=IDA

GO:0004365 "glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity" evidence=IDA

GO:0006096 "glycolysis" evidence=TAS

GO:0009277 "fungal-type cell wall" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0051701 "interaction with host" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0043236 "laminin binding" evidence=IMP;IDA

GO:0050840 "extracellular matrix binding" evidence=IMP;IDA

GO:0044406 "adhesion to host" evidence=IMP

GO:0007160 "cell-matrix adhesion" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0001968 "fibronectin binding" evidence=IDA

GO:0005811 "lipid particle" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0044416 "induction by symbiont of host defense response" evidence=IDA

GO:0009986 "cell surface" evidence=IDA

GO:0072593 "reactive oxygen species metabolic process" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P25857	G3PB_ARATH	1, ., 2, ., 1, ., 1, 3	0.7923	0.9233	0.5123	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.2.1	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_LG_V0707	SubName- Full=Putative uncharacterized protein; (453 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00080776	RecName- Full=Phosphoglycerate kinase; EC=2.7.2.3; (402 aa)	•					•	•		0.940
	grail3.0154005402	phosphoglycerate kinase (EC-2.7.7.2 2.7.2.3) (402 aa)	•					•	•		0.940
	estExt_fgenesh4_pm.C_LG_VIII0335	phosphoglycerate kinase (481 aa)	•					•	•		0.932
	estExt_fgenesh4_pm.C_LG_X0655	phosphoglycerate kinase (481 aa)	•					•	•		0.932
	grail3.0049021504	RecName- Full=Triosephosphate isomerase; EC=5.3.1.1; (254 aa)	•					•	•		0.913
	estExt_fgenesh4_pg.C_LG_I1744	triose-phosphate isomerase (EC-5.3.1.1) (255 aa)	•					•	•		0.913
	estExt_Genewise1_v1.C_LG_IV0988	hypothetical protein (256 aa)	•					•	•		0.913
	estExt_Genewise1_v1.C_LG_X2172	RecName- Full=Triosephosphate isomerase; EC=5.3.1.1; (256 aa)	•					•	•		0.913
	estExt_Genewise1_v1.C_LG_XIV0740	transketolase (EC-2.2.1.1) (635 aa)						•	•		0.908
	eugene3.00091331	RecName- Full=Triosephosphate isomerase; EC=5.3.1.1; (264 aa)	•	•				•	•		0.908

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	248
PLN02237	442	PLN02237, PLN02237, glyceraldehyde-3-phosphate deh	1e-137
PLN03096	395	PLN03096, PLN03096, glyceraldehyde-3-phosphate deh	5e-97
PRK07403	337	PRK07403, PRK07403, glyceraldehyde-3-phosphate deh	8e-68
pfam00044	148	pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate deh	4e-65
smart00846	149	smart00846, Gp_dh_N, Glyceraldehyde 3-phosphate de	3e-60
TIGR01534	326	TIGR01534, GAPDH-I, glyceraldehyde-3-phosphate deh	3e-55
COG0057	335	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrog	7e-52
PRK07729	343	PRK07729, PRK07729, glyceraldehyde-3-phosphate deh	1e-51
PLN02272	421	PLN02272, PLN02272, glyceraldehyde-3-phosphate deh	3e-42
PRK13535	336	PRK13535, PRK13535, erythrose 4-phosphate dehydrog	7e-33
PTZ00023	337	PTZ00023, PTZ00023, glyceraldehyde-3-phosphate deh	4e-32
PRK15425	331	PRK15425, gapA, glyceraldehyde-3-phosphate dehydro	2e-29
PLN02358	338	PLN02358, PLN02358, glyceraldehyde-3-phosphate deh	3e-28
TIGR01532	325	TIGR01532, E4PD_g-proteo, erythrose-4-phosphate de	4e-28
PTZ00434	361	PTZ00434, PTZ00434, cytosolic glyceraldehyde 3-pho	3e-27
PRK08955	334	PRK08955, PRK08955, glyceraldehyde-3-phosphate deh	1e-22
PRK08289	477	PRK08289, PRK08289, glyceraldehyde-3-phosphate deh	1e-22
PTZ00353	342	PTZ00353, PTZ00353, glycosomal glyceraldehyde-3-ph	4e-10

>gnl|CDD|215131 PLN02237, PLN02237, glyceraldehyde-3-phosphate dehydrogenase B

 Score =  392 bits (1008), Expect = e-137
 Identities = 194/233 (83%), Positives = 209/233 (89%), Gaps = 9/233 (3%)

Query: 3   SHSALAPSRIPAITRIPSKTTHSFPTQCSTKRLDVAEFAGLRANAGATYATGARDASFFD 62
           +H+ALA SRIPA TR+PSK +H        KRL+VAEF+GLRA++  T+A  AR+ASFFD
Sbjct: 1   THAALASSRIPATTRLPSKASH--------KRLEVAEFSGLRASSCVTFAKNAREASFFD 52

Query: 63  AVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG 122
            V +QL PK  AGS PV+ ETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG
Sbjct: 53  VVASQLAPK-VAGSTPVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG 111

Query: 123 GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIE 182
           GVKNASHLLKYDS+LGTFKADVKIVD+ETISVDGK IKVVSNRDPL+LPWAELGIDIVIE
Sbjct: 112 GVKNASHLLKYDSMLGTFKADVKIVDDETISVDGKPIKVVSNRDPLKLPWAELGIDIVIE 171

Query: 183 GTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIV 235
           GTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNE DYDHEVANIV
Sbjct: 172 GTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEDDYDHEVANIV 224

Length = 442

>gnl|CDD|215572 PLN03096, PLN03096, glyceraldehyde-3-phosphate dehydrogenase A; Provisional

 Score =  288 bits (739), Expect = 5e-97
 Identities = 127/194 (65%), Positives = 148/194 (76%), Gaps = 5/194 (2%)

Query: 37  VAEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGR 96
            +EF+GL++++  T+   +             T  V++     +  T AK+KVAINGFGR
Sbjct: 15  FSEFSGLKSSSAVTFGKRSDS----LDFVVFATSAVSSSGGARRAVTEAKIKVAINGFGR 70

Query: 97  IGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDG 156
           IGRNFLRCWHGRKDSPLDVV +ND+GGVK ASHLLKYDS LGTF ADVK V ++ ISVDG
Sbjct: 71  IGRNFLRCWHGRKDSPLDVVAINDTGGVKQASHLLKYDSTLGTFDADVKPVGDDAISVDG 130

Query: 157 KLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIP 216
           K+IKVVS+R+PL LPW ELGID+VIEGTGVFVD  GAGKHIQAGAKKV+ITAP KG DIP
Sbjct: 131 KVIKVVSDRNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKG-DIP 189

Query: 217 TYVVGVNEKDYDHE 230
           TYVVGVN  DY H 
Sbjct: 190 TYVVGVNADDYKHS 203

Length = 395

>gnl|CDD|180962 PRK07403, PRK07403, glyceraldehyde-3-phosphate dehydrogenase; Reviewed

 Score =  212 bits (540), Expect = 8e-68
 Identities = 94/149 (63%), Positives = 117/149 (78%), Gaps = 1/149 (0%)

Query: 87  LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
           ++VAINGFGRIGRNFLRCW GR++S L++V +ND+   +  +HLLKYDS+LG   AD+  
Sbjct: 2   IRVAINGFGRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADISA 61

Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
            +N +I+V+GK IK VS+R+PL LPW E GID++IE TGVFV   GA KHIQAGAKKV+I
Sbjct: 62  DEN-SITVNGKTIKCVSDRNPLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLI 120

Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIV 235
           TAP KG DI TYVVGVN  +YDHE  NI+
Sbjct: 121 TAPGKGEDIGTYVVGVNHHEYDHEDHNII 149

Length = 337

>gnl|CDD|215675 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

 Score =  198 bits (507), Expect = 4e-65
 Identities = 80/150 (53%), Positives = 103/150 (68%), Gaps = 5/150 (3%)

Query: 87  LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
           +KV INGFGRIGR  LR    + D  L+VV +ND    +  ++LLKYDS+ G F  +V+ 
Sbjct: 1   IKVGINGFGRIGRLVLRAALAQDD--LEVVAINDLTDPETLAYLLKYDSVHGRFDGEVE- 57

Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
           VD + + V+GK IKV + RDP +LPW ELG+DIV+E TGVF     A  H++AGAKKVII
Sbjct: 58  VDEDGLIVNGKKIKVFAERDPAELPWGELGVDIVVESTGVFTTAEKAEAHLKAGAKKVII 117

Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVR 236
           +APAK  D PT+V GVN +DYD E  +IV 
Sbjct: 118 SAPAKD-DDPTFVYGVNHEDYDPE-DDIVS 145

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold. Length = 148

>gnl|CDD|214851 smart00846, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

 Score =  186 bits (475), Expect = 3e-60
 Identities = 76/150 (50%), Positives = 100/150 (66%), Gaps = 5/150 (3%)

Query: 87  LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
           +KV INGFGRIGR  LR    R D  ++VV +ND    +  ++LLKYDS+ G F   V+ 
Sbjct: 1   IKVGINGFGRIGRLVLRAALERPD--VEVVAINDLTDPEYLAYLLKYDSVHGRFPGTVE- 57

Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
           V+ + + V+GK IKV + RDP  LPW ELG+DIV+E TG F     A  H++AGAKKVII
Sbjct: 58  VEGDGLVVNGKAIKVFAERDPANLPWGELGVDIVVECTGGFTTREKASAHLKAGAKKVII 117

Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVR 236
           +AP+K AD PT+V GVN  +YD E  +I+ 
Sbjct: 118 SAPSKDAD-PTFVYGVNHDEYDGE-DHIIS 145

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold. Length = 149

>gnl|CDD|233453 TIGR01534, GAPDH-I, glyceraldehyde-3-phosphate dehydrogenase, type I

 Score =  179 bits (456), Expect = 3e-55
 Identities = 68/144 (47%), Positives = 93/144 (64%), Gaps = 3/144 (2%)

Query: 88  KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIV 147
           KV INGFGRIGR  LR    +  + L+VV +ND   ++  ++LLKYDS+ G F+ +V   
Sbjct: 1   KVGINGFGRIGRLVLRAILEKPGNDLEVVAINDLTDLEYLAYLLKYDSVHGRFEGEVTAD 60

Query: 148 DNETISVDGKLIKVVSN-RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
           ++  + V+GK +  V + RDP  LPW  LG+DIVIE TG F D      H++AGAKKV+I
Sbjct: 61  ED-GLVVNGKEVISVFSERDPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLI 119

Query: 207 TAPAKGADIPTYVVGVNEKDYDHE 230
           +AP+KG D+ T V GVN  +YD  
Sbjct: 120 SAPSKG-DVKTIVYGVNHDEYDPS 142

This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two PFAM models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model [Energy metabolism, Glycolysis/gluconeogenesis]. Length = 326

>gnl|CDD|223135 COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]

 Score =  171 bits (435), Expect = 7e-52
 Identities = 74/152 (48%), Positives = 96/152 (63%), Gaps = 5/152 (3%)

Query: 86  KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
            +KVAINGFGRIGR   R    R    ++VV +ND       +HLLKYDS+ G F  +V+
Sbjct: 1   MIKVAINGFGRIGRLVARAALERDGD-IEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVE 59

Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQA-GAKKV 204
            V ++ + V+GK IKV++ RDP  LPWA+LG+DIV+E TG F     A KH++A GAKKV
Sbjct: 60  -VKDDALVVNGKGIKVLAERDPANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKV 118

Query: 205 IITAPAKGADIPTYVVGVNEKDYDHEVANIVR 236
           +I+AP K  D+ T V GVN   YD     IV 
Sbjct: 119 LISAPGKD-DVATVVYGVNHNYYDAG-HTIVS 148

Length = 335

>gnl|CDD|236079 PRK07729, PRK07729, glyceraldehyde-3-phosphate dehydrogenase; Validated

 Score =  170 bits (433), Expect = 1e-51
 Identities = 74/150 (49%), Positives = 98/150 (65%), Gaps = 4/150 (2%)

Query: 86  KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
           K KVAINGFGRIGR   R     K+S  ++V +N S   +  +HL+KYD++ G F   V+
Sbjct: 2   KTKVAINGFGRIGRMVFR--KAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVE 59

Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
             ++  + VDGK I++++NRDP +LPW +LGIDIVIE TG F     A  H++AGAKKVI
Sbjct: 60  AFED-HLLVDGKKIRLLNNRDPKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVI 118

Query: 206 ITAPAKGADIPTYVVGVNEKDYDHEVANIV 235
           +TAP K  D+ T VVGVNE   D E   I+
Sbjct: 119 LTAPGKNEDV-TIVVGVNEDQLDIEKHTII 147

Length = 343

>gnl|CDD|177912 PLN02272, PLN02272, glyceraldehyde-3-phosphate dehydrogenase

 Score =  148 bits (375), Expect = 3e-42
 Identities = 79/225 (35%), Positives = 116/225 (51%), Gaps = 11/225 (4%)

Query: 5   SALAPSRIPAITRIPSKTTHSFPTQCSTKRLDVAEFAGLRANAGATYATGARDASFFDAV 64
           +A AP+     +   S ++             ++        + +  +  AR      A 
Sbjct: 10  AATAPAAAARGSDFSSSSSDPSKVSSVGFSSSLSFSGSSSGASSSLQSCSARSVQPIKAT 69

Query: 65  TAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-G 123
             +  P V      +K  +  K K+ INGFGRIGR  LR    R D  ++VV VND    
Sbjct: 70  ATEAPPAV------LKSSSSGKTKIGINGFGRIGRLVLRIATSRDD--IEVVAVNDPFID 121

Query: 124 VKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEG 183
            K  +++ KYDS  G FK  + +VD+ T+ ++GK IKV S RDP ++PW + G + V+E 
Sbjct: 122 AKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTSKRDPAEIPWGDFGAEYVVES 181

Query: 184 TGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYD 228
           +GVF     A  H++ GAKKV+I+AP+  AD P +VVGVNEK Y 
Sbjct: 182 SGVFTTVEKASAHLKGGAKKVVISAPS--ADAPMFVVGVNEKTYK 224

Length = 421

>gnl|CDD|184122 PRK13535, PRK13535, erythrose 4-phosphate dehydrogenase; Provisional

 Score =  121 bits (306), Expect = 7e-33
 Identities = 59/143 (41%), Positives = 84/143 (58%), Gaps = 6/143 (4%)

Query: 87  LKVAINGFGRIGRNFLRCWH--GRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADV 144
           ++VAINGFGRIGRN LR  +  GR+   + VV +N+    +  +HLLKYD+  G F  DV
Sbjct: 2   IRVAINGFGRIGRNVLRALYESGRRAE-ITVVAINELADAEGMAHLLKYDTSHGRFAWDV 60

Query: 145 KIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKV 204
           +  + + + V    I+++  RD   LPW ELG+D+V++ TGV+        HI AGAKKV
Sbjct: 61  R-QERDQLFVGDDAIRLLHERDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKV 119

Query: 205 IITAPAKGADI-PTYVVGVNEKD 226
           + + P    D+  T V GVN   
Sbjct: 120 LFSHPG-SNDLDATVVYGVNHDQ 141

Length = 336

>gnl|CDD|173322 PTZ00023, PTZ00023, glyceraldehyde-3-phosphate dehydrogenase; Provisional

 Score =  119 bits (301), Expect = 4e-32
 Identities = 61/142 (42%), Positives = 86/142 (60%), Gaps = 5/142 (3%)

Query: 88  KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKI 146
           K+ INGFGRIGR   R    R+D  ++VV +ND    +    +LLKYDS+ G+  A+V +
Sbjct: 4   KLGINGFGRIGRLVFRAALERED--VEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSV 61

Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
            D   + +  K + V   +DP  +PW + G+D+V E TGVF+    A  H++ GAKKVI+
Sbjct: 62  TD-GFLMIGSKKVHVFFEKDPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIM 120

Query: 207 TAPAKGADIPTYVVGVNEKDYD 228
           +AP K  D P YV+GVN   YD
Sbjct: 121 SAPPKD-DTPIYVMGVNHTQYD 141

Length = 337

>gnl|CDD|185323 PRK15425, gapA, glyceraldehyde-3-phosphate dehydrogenase A; Provisional

 Score =  112 bits (281), Expect = 2e-29
 Identities = 63/141 (44%), Positives = 86/141 (60%), Gaps = 4/141 (2%)

Query: 87  LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
           +KV INGFGRIGR   R    R D  +++V +ND       +++LKYDS  G F   V++
Sbjct: 3   IKVGINGFGRIGRIVFRAAQKRSD--IEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEV 60

Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
            D   I V+GK I+V + RDP  L W E+G+D+V E TG+F+    A KHI AGAKKV++
Sbjct: 61  KDGHLI-VNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 119

Query: 207 TAPAKGADIPTYVVGVNEKDY 227
           T P+K  + P +V G N   Y
Sbjct: 120 TGPSKD-NTPMFVKGANFDKY 139

Length = 331

>gnl|CDD|165999 PLN02358, PLN02358, glyceraldehyde-3-phosphate dehydrogenase

 Score =  109 bits (273), Expect = 3e-28
 Identities = 62/148 (41%), Positives = 93/148 (62%), Gaps = 6/148 (4%)

Query: 86  KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFK-AD 143
           K+++ INGFGRIGR   R    R D  +++V VND     +  +++ KYDS+ G +K  +
Sbjct: 5   KIRIGINGFGRIGRLVARVVLQRDD--VELVAVNDPFITTEYMTYMFKYDSVHGQWKHHE 62

Query: 144 VKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKK 203
           +K+ D++T+    K + V   R+P  +PW E G D V+E TGVF D   A  H++ GAKK
Sbjct: 63  LKVKDDKTLLFGEKPVTVFGIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKK 122

Query: 204 VIITAPAKGADIPTYVVGVNEKDYDHEV 231
           V+I+AP+K  D P +VVGVNE +Y  ++
Sbjct: 123 VVISAPSK--DAPMFVVGVNEHEYKSDL 148

Length = 338

>gnl|CDD|130595 TIGR01532, E4PD_g-proteo, erythrose-4-phosphate dehydrogenase

 Score =  108 bits (272), Expect = 4e-28
 Identities = 56/140 (40%), Positives = 79/140 (56%), Gaps = 2/140 (1%)

Query: 88  KVAINGFGRIGRNFLRCWHGR-KDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
           +VAINGFGRIGRN LR  +   + + + VV +N+       +HLLKYD+  G F  +V+ 
Sbjct: 1   RVAINGFGRIGRNVLRALYESGRRAEITVVAINELADAAGMAHLLKYDTSHGRFAWEVR- 59

Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
            D + + V    I+V+  R    LPW ELG+D+V++ TGV+        HI AGAKKV+ 
Sbjct: 60  QDRDQLFVGDDAIRVLHERSLQSLPWRELGVDLVLDCTGVYGSREHGEAHIAAGAKKVLF 119

Query: 207 TAPAKGADIPTYVVGVNEKD 226
           + P       T V GVN+  
Sbjct: 120 SHPGASDLDATIVYGVNQDQ 139

This model represents the small clade of dehydrogenases in gamma-proteobacteria which utilize NAD+ to oxidize erythrose-4-phosphate (E4P) to 4-phospho-erythronate, a precursor for the de novo synthesis of pyridoxine via 4-hydroxythreonine and D-1-deoxyxylulose. This enzyme activity appears to have evolved from glyceraldehyde-3-phosphate dehydrogenase, whose substrate differs only in the lack of one carbon relative to E4P. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridoxine]. Length = 325

>gnl|CDD|185614 PTZ00434, PTZ00434, cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional

 Score =  107 bits (267), Expect = 3e-27
 Identities = 67/164 (40%), Positives = 96/164 (58%), Gaps = 16/164 (9%)

Query: 85  AKLKVAINGFGRIGRNFLR--CWHGRKDSPLDVVVVND-SGGVKNASHLLKYDSLLGTFK 141
           A +KV INGFGRIGR   +  C  G   + +DVV V D S   +  ++ +KYD++ G  K
Sbjct: 2   APIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPK 61

Query: 142 ADVK-------IVDNETISVDGKLIKVV-SNRDPLQLPWAELGIDIVIEGTGVFVDGPGA 193
             V+       +  ++ + V+G  IK V + R+P  LPW +LG+D VIE TG+F D   A
Sbjct: 62  YTVETTKSSPSVKTDDVLVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAA 121

Query: 194 GKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYD----HEVAN 233
             H++ GAKKV+I+APA G    T V+GVN+ +Y     H V+N
Sbjct: 122 EGHLKGGAKKVVISAPASGG-AKTIVMGVNQHEYSPTEHHVVSN 164

Length = 361

>gnl|CDD|169599 PRK08955, PRK08955, glyceraldehyde-3-phosphate dehydrogenase; Validated

 Score = 94.4 bits (235), Expect = 1e-22
 Identities = 52/151 (34%), Positives = 81/151 (53%), Gaps = 6/151 (3%)

Query: 86  KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGG-VKNASHLLKYDSLLGTFKADV 144
            +KV INGFGRIGR  LR      +  L+ V +ND  G     +HLL++DS+ G +  +V
Sbjct: 2   TIKVGINGFGRIGRLALRAAWDWPE--LEFVQINDPAGDAATLAHLLEFDSVHGRWHHEV 59

Query: 145 KIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKV 204
              + + I ++GK I+   N+      W+  G D+VIE +GV         ++  G K+V
Sbjct: 60  -TAEGDAIVINGKRIRTTQNKAIADTDWS--GCDVVIEASGVMKTKALLQAYLDQGVKRV 116

Query: 205 IITAPAKGADIPTYVVGVNEKDYDHEVANIV 235
           ++TAP K   +   V+GVN+  +D  +  IV
Sbjct: 117 VVTAPVKEEGVLNIVMGVNDHLFDPAIHPIV 147

Length = 334

>gnl|CDD|236219 PRK08289, PRK08289, glyceraldehyde-3-phosphate dehydrogenase; Reviewed

 Score = 95.4 bits (238), Expect = 1e-22
 Identities = 53/162 (32%), Positives = 77/162 (47%), Gaps = 31/162 (19%)

Query: 89  VAINGFGRIGR-------------NFLRCWHGRKDSPLDVVVVNDSGG---VKNASHLLK 132
           V + GFGRIGR             N LR         L  +VV         K AS LL+
Sbjct: 130 VVLYGFGRIGRLLARLLIEKTGGGNGLR---------LRAIVVRKGSEGDLEKRAS-LLR 179

Query: 133 YDSLLGTFKADVKI-VDNETISVDGKLIKVVSNRDPLQLPWAELGID--IVIEGTGVFVD 189
            DS+ G F   + +  +N  I  +G  I+V+    P ++ +   GI+  +V++ TG + D
Sbjct: 180 RDSVHGPFNGTITVDEENNAIIANGNYIQVIYANSPEEVDYTAYGINNALVVDNTGKWRD 239

Query: 190 GPGAGKHIQA-GAKKVIITAPAKGADIPTYVVGVNEKDYDHE 230
             G  +H+++ G  KV++TAP KG DI   V GVN  D   E
Sbjct: 240 EEGLSQHLKSKGVAKVLLTAPGKG-DIKNIVHGVNHSDITDE 280

Length = 477

>gnl|CDD|173546 PTZ00353, PTZ00353, glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional

 Score = 58.7 bits (142), Expect = 4e-10
 Identities = 40/140 (28%), Positives = 72/140 (51%), Gaps = 6/140 (4%)

Query: 89  VAINGFGRIGRNFLRCWHGRKDSPLDVVVVND-SGGVKNASHLLKYDS-LLGTFKADVKI 146
           V INGFG +G+  L  +    D  + VV VND S  +   +++L+ +S L     A +++
Sbjct: 5   VGINGFGPVGKAVL--FASLTDPLVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIRV 62

Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
           V  + +    + I+V +  D +++ W + G+  V+E TG++        H+  GAK V +
Sbjct: 63  VGEQIVLNGTQKIRVSAKHDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFV 122

Query: 207 TAPAKGADIPTYVVGVNEKD 226
               + AD PT + G N++ 
Sbjct: 123 A--GQSADAPTVMAGSNDER 140

Length = 342

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	248
PLN02237	442	glyceraldehyde-3-phosphate dehydrogenase B	100.0
PTZ00434	361	cytosolic glyceraldehyde 3-phosphate dehydrogenase	100.0
PF00044	151	Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase,	100.0
PLN03096	395	glyceraldehyde-3-phosphate dehydrogenase A; Provis	100.0
PRK08289	477	glyceraldehyde-3-phosphate dehydrogenase; Reviewed	100.0
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	100.0
PTZ00023	337	glyceraldehyde-3-phosphate dehydrogenase; Provisio	100.0
PRK07403	337	glyceraldehyde-3-phosphate dehydrogenase; Reviewed	100.0
COG0057	335	GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt	100.0
PRK15425	331	gapA glyceraldehyde-3-phosphate dehydrogenase A; P	100.0
PTZ00353	342	glycosomal glyceraldehyde-3-phosphate dehydrogenas	100.0
PRK07729	343	glyceraldehyde-3-phosphate dehydrogenase; Validate	100.0
TIGR01534	327	GAPDH-I glyceraldehyde-3-phosphate dehydrogenase,	100.0
PLN02272	421	glyceraldehyde-3-phosphate dehydrogenase	100.0
PRK13535	336	erythrose 4-phosphate dehydrogenase; Provisional	100.0
PLN02358	338	glyceraldehyde-3-phosphate dehydrogenase	100.0
PRK08955	334	glyceraldehyde-3-phosphate dehydrogenase; Validate	100.0
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	100.0
KOG0657	285	consensus Glyceraldehyde 3-phosphate dehydrogenase	100.0
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	99.96
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	99.85
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	98.84
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	98.46
PRK08300	302	acetaldehyde dehydrogenase; Validated	97.55
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	97.42
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	97.41
TIGR00036	266	dapB dihydrodipicolinate reductase.	97.23
PRK13303	265	L-aspartate dehydrogenase; Provisional	97.18
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	96.93
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	96.9
PRK06270	341	homoserine dehydrogenase; Provisional	96.9
TIGR00978	341	asd_EA aspartate-semialdehyde dehydrogenase (non-p	96.89
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	96.84
PRK06813	346	homoserine dehydrogenase; Validated	96.63
PRK13304	265	L-aspartate dehydrogenase; Reviewed	96.44
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	96.39
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	96.33
PRK06392	326	homoserine dehydrogenase; Provisional	96.06
COG0460	333	ThrA Homoserine dehydrogenase [Amino acid transpor	95.86
PRK00048	257	dihydrodipicolinate reductase; Provisional	95.78
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	95.59
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	95.48
PRK06901	322	aspartate-semialdehyde dehydrogenase; Provisional	95.12
PRK06349	426	homoserine dehydrogenase; Provisional	94.94
COG0289	266	DapB Dihydrodipicolinate reductase [Amino acid tra	94.74
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	94.53
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	94.49
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	94.24
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	94.12
PRK11579	346	putative oxidoreductase; Provisional	93.97
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	93.81
TIGR01745	366	asd_gamma aspartate-semialdehyde dehydrogenase, ga	93.7
COG4091	438	Predicted homoserine dehydrogenase [Amino acid tra	93.31
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	92.86
PLN02477	410	glutamate dehydrogenase	92.15
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	91.83
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	91.67
PRK06487	317	glycerate dehydrogenase; Provisional	91.49
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	91.39
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	90.84
PRK06932	314	glycerate dehydrogenase; Provisional	90.67
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	89.92
PRK08374	336	homoserine dehydrogenase; Provisional	89.82
PLN02928	347	oxidoreductase family protein	89.78
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	89.67
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	89.65
COG2344	211	AT-rich DNA-binding protein [General function pred	89.32
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	89.21
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	89.13
PRK06436	303	glycerate dehydrogenase; Provisional	89.08
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	88.85
PRK07574	385	formate dehydrogenase; Provisional	88.67
PRK13243	333	glyoxylate reductase; Reviewed	88.4
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	88.31
PRK10206	344	putative oxidoreductase; Provisional	88.0
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	87.64
PLN02306	386	hydroxypyruvate reductase	87.37
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	87.08
PLN02775	286	Probable dihydrodipicolinate reductase	86.65
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	86.49
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	86.38
PLN02383	344	aspartate semialdehyde dehydrogenase	86.23
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	84.9
PRK12480	330	D-lactate dehydrogenase; Provisional	84.88
PRK14030	445	glutamate dehydrogenase; Provisional	84.77
COG3804	350	Uncharacterized conserved protein related to dihyd	84.73
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	84.57
PLN03139	386	formate dehydrogenase; Provisional	84.43
PRK05447	385	1-deoxy-D-xylulose 5-phosphate reductoisomerase; P	83.99
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	83.61
PLN02256	304	arogenate dehydrogenase	83.48
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	82.94
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	82.83
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	82.23
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	82.11
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	81.73
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	81.51
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	81.32
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	80.52

>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B

Probab=100.00  E-value=1.7e-66  Score=498.01  Aligned_cols=231  Identities=85%  Similarity=1.273  Sum_probs=210.3

Q ss_pred             ccCCCCCCCCCCccccCCCCcCCCCCcccccccccccccCcccccccccccccCCcCHHHHHHhhccccccCCCCCcccc
Q 025797            3 SHSALAPSRIPAITRIPSKTTHSFPTQCSTKRLDVAEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKE   82 (248)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (248)
                      +|||||++|||+++|+||+++|        ++.+|++|+|||++++++|.....+.+|.+.++.++..+.. .....+.+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   71 (442)
T PLN02237          1 THAALASSRIPATTRLPSKASH--------KRLEVAEFSGLRASSCVTFAKNAREASFFDVVASQLAPKVA-GSTPVRGE   71 (442)
T ss_pred             CcchhcccCCcccccccccccc--------ccccccccccccccccccccccccchhHHHHhhhhhhhhhc-cccccccc
Confidence            6999999999999999999862        66789999999999999998777788999999999987633 34566677


Q ss_pred             ccceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEE
Q 025797           83 TVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVV  162 (248)
Q Consensus        83 ~~~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~  162 (248)
                      +.|++||||||||||||+++|+++++.+++++||+|||..++++++|||||||+||+|+++|++.+++.|.+||++|+|+
T Consensus        72 ~~~~ikVgINGFGRIGR~vlR~~~~~~~~~ievVaINd~~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~Gk~I~V~  151 (442)
T PLN02237         72 TVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDDETISVDGKPIKVV  151 (442)
T ss_pred             ccceEEEEEECCChHHHHHHHHHHHccCCCeEEEEECCCCCHHHHHHHHccccCCCCcCCceEECCCCEEEECCEEEEEE
Confidence            88999999999999999999999875445799999999999999999999999999999999864678999999999999


Q ss_pred             ecCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--C
Q 025797          163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--K  240 (248)
Q Consensus       163 ~~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~  240 (248)
                      +++||+++||+++|+||||||||.|++++.+..||++|||||+||||.++.|+|||||||||+.|++..++||||||  +
T Consensus       152 ~~~dp~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iSAP~~d~dvptvV~GVN~~~~~~~~~~IISnaSCTT  231 (442)
T PLN02237        152 SNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEDDYDHEVANIVSNASCTT  231 (442)
T ss_pred             EcCCchhCChhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEECCCCCCCCCceEecccCHHHhCcCCCCEEECCchHH
Confidence            99999999999999999999999999999999999999999999999987568999999999999864368999999  8


Q ss_pred             cc
Q 025797          241 NW  242 (248)
Q Consensus       241 ~~  242 (248)
                      ||
T Consensus       232 Nc  233 (442)
T PLN02237        232 NC  233 (442)
T ss_pred             HH
Confidence            87

>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=8.8e-58  Score=429.09  Aligned_cols=157  Identities=40%  Similarity=0.666  Sum_probs=145.3

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCC--CCCeEEEEEeCC-CChhhhhhhccccCcCcccCceEEEe-------cCCcEEE
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRK--DSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIV-------DNETISV  154 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~--~~~l~iVaIND~-~~~e~~ayLLkYDStHGkf~g~V~v~-------e~~~L~i  154 (248)
                      |++||||||||||||+++|+++++.  ..++++|+|||+ .++++++|||||||+||+|+++|+++       +++.|+|
T Consensus         2 m~ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~~~~~~~~~l~i   81 (361)
T PTZ00434          2 APIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPKYTVETTKSSPSVKTDDVLVV   81 (361)
T ss_pred             CceEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcCCceeecccccccccCCEEEE
Confidence            6689999999999999999988752  357999999995 89999999999999999999999972       5788999


Q ss_pred             CCeEEEEE-ecCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCe
Q 025797          155 DGKLIKVV-SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVAN  233 (248)
Q Consensus       155 nGk~I~v~-~~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~  233 (248)
                      ||++|+++ +++||++|||+++|+||||||||+|++++++++||++||||||||||+|+ +.|||||||||++|+++.++
T Consensus        82 ng~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP~~d-~~~t~V~GVN~~~y~~~~~~  160 (361)
T PTZ00434         82 NGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVISAPASG-GAKTIVMGVNQHEYSPTEHH  160 (361)
T ss_pred             CCEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEECCCCCC-CCceEEEcCChHHcCcccCc
Confidence            99999996 99999999999999999999999999999999999999999999999986 46899999999999983278


Q ss_pred             EEeecC--Ccc
Q 025797          234 IVRSWM--KNW  242 (248)
Q Consensus       234 IISnAS--~~~  242 (248)
                      ||||||  +||
T Consensus       161 IiSnASCTTNc  171 (361)
T PTZ00434        161 VVSNASCTTNC  171 (361)
T ss_pred             EEECCChHHHh
Confidence            999999  899

>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate

Probab=100.00  E-value=2.7e-57  Score=381.33  Aligned_cols=149  Identities=49%  Similarity=0.811  Sum_probs=138.2

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCC-ChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR  165 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~-~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~  165 (248)
                      +||||||||||||+++|+++.+  +++++|+|||+. ++++++|||||||+||+|+++|++ +++.|++||++|++++++
T Consensus         1 ikVgINGfGRIGR~v~r~~~~~--~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~~~v~~-~~~~l~v~G~~I~~~~~~   77 (151)
T PF00044_consen    1 IKVGINGFGRIGRLVLRAALDQ--PDIEVVAINDPAPDPEYLAYLLKYDSVHGRFPGDVEV-DDDGLIVNGKKIKVTEER   77 (151)
T ss_dssp             EEEEEESTSHHHHHHHHHHHTS--TTEEEEEEEESSSSHHHHHHHHHEETTTESGSSHEEE-ETTEEEETTEEEEEEHTS
T ss_pred             CEEEEECCCcccHHHHHhhccc--ceEEEEEEecccccchhhhhhhhccccccceeccccc-ccceeEeecccccchhhh
Confidence            6999999999999999999954  579999999996 999999999999999999999998 577899999999999999


Q ss_pred             CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC
Q 025797          166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM  239 (248)
Q Consensus       166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS  239 (248)
                      ||+++||+++|+||||||||.|++++.++.||++||||||+|||+|+..+|||||||||++|+++ ++||||||
T Consensus        78 dp~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap~~~~~~~t~V~GvN~~~~~~~-~~iIS~aS  150 (151)
T PF00044_consen   78 DPEEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVIISAPSKDDADPTFVMGVNHDDYDPE-HHIISNAS  150 (151)
T ss_dssp             SGGGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEESSS-SSSSSEEE-TTTSGGGGTTT-TSEEEE--
T ss_pred             hhcccccccccccEEEeccccceecccccccccccccceeeccccccccCCeEEeeccHHHhCCC-CCEEEccC
Confidence            99999999999999999999999999999999999999999999997438999999999999998 69999998

The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....

>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=100.00  E-value=1.1e-55  Score=419.47  Aligned_cols=203  Identities=64%  Similarity=1.018  Sum_probs=180.9

Q ss_pred             cccccccCcccccccccccccCCcCHHHHHHhhccccccCCCCCccccccceeeEEEeCCChhhHHHHHHHhhCCCCCeE
Q 025797           35 LDVAEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLD  114 (248)
Q Consensus        35 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkV~INGFGRIGRlvlR~~~~~~~~~l~  114 (248)
                      .+|++|+|||++++++|+......+|   +.+++... ..........+.|++||+|||||||||+++|+++++..+.++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~kVaInGfGrIGR~vlr~l~~~~~~~~e   88 (395)
T PLN03096         13 KGFSEFSGLKSSSAVTFGKRSDSLDF---VVFATSAV-SSSGGARRAVTEAKIKVAINGFGRIGRNFLRCWHGRKDSPLD   88 (395)
T ss_pred             CcccccccccccCcccccccccchhh---hhhhhhhh-hccccccccccccccEEEEECcCHHHHHHHHHHHhCCCCCeE
Confidence            48999999999888888655555555   77777654 222345566777989999999999999999999886546799


Q ss_pred             EEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCCCCCCCCCCCcccEEecCcccccCchhhh
Q 025797          115 VVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAG  194 (248)
Q Consensus       115 iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~  194 (248)
                      +|+|||..++++++|||+|||+||+|+++|+..+++.|++||++|+|++++||+++||+++|+||||||||.|++++.++
T Consensus        89 vvaINd~~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~gk~I~v~~~~dp~~~~w~~~gvDiVie~TG~f~s~~~a~  168 (395)
T PLN03096         89 VVAINDTGGVKQASHLLKYDSTLGTFDADVKPVGDDAISVDGKVIKVVSDRNPLNLPWGELGIDLVIEGTGVFVDREGAG  168 (395)
T ss_pred             EEEEcCCCCHHHHHHHHhhcccCCCcCCcEEEecCCEEEECCEEEEEEEcCCcccccccccCCCEEEECcchhhhHHHHH
Confidence            99999999999999999999999999999986567889999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--Cccc
Q 025797          195 KHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--KNWG  243 (248)
Q Consensus       195 ~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~~~~  243 (248)
                      +||++|||||+||||.++ |+|||||||||+.|++. ++||||||  +||=
T Consensus       169 ~hl~aGAkkV~iSap~~~-~~ptvV~GVN~~~l~~~-~~IISnaSCTTn~L  217 (395)
T PLN03096        169 KHIQAGAKKVLITAPGKG-DIPTYVVGVNADDYKHS-DPIISNASCTTNCL  217 (395)
T ss_pred             HHHHCCCEEEEeCCCCCC-CCCeEeCccCHHHhccC-CCEEECCchHHHHH
Confidence            999999999999999886 78999999999999987 89999999  8883

>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed

Probab=100.00  E-value=8.5e-56  Score=426.42  Aligned_cols=186  Identities=29%  Similarity=0.511  Sum_probs=167.9

Q ss_pred             cccccccCCcCHHHHHHhhccccccCCCCCccccccceeeEEEeCCChhhHHHHHHHhhCC--CCCeEEEEEe----CCC
Q 025797           49 ATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRK--DSPLDVVVVN----DSG  122 (248)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkV~INGFGRIGRlvlR~~~~~~--~~~l~iVaIN----D~~  122 (248)
                      +.|..++++.++.+||+++|++.+++..  .    .+|.||+|||||||||+++|+++++.  +.++++||||    |..
T Consensus        96 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~----~~~~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvAIn~~~nd~~  169 (477)
T PRK08289         96 VKYKAEGDGSDVEAFVAEELADAVGGAD--D----IEPRDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSEG  169 (477)
T ss_pred             HHHhhccCCCcHHHHHHHHHhhhhcCCC--C----CCCceEEEECCCHHHHHHHHHHHhccCCCCCeEEEEEecCCCCCC
Confidence            4565557788999999999999765432  1    25789999999999999999998763  2579999996    568


Q ss_pred             ChhhhhhhccccCcCcccCceEEEe-cCCcEEECCeEEEEEecCCCCCCCCCCCccc--EEecCcccccCchhhhHHHH-
Q 025797          123 GVKNASHLLKYDSLLGTFKADVKIV-DNETISVDGKLIKVVSNRDPLQLPWAELGID--IVIEGTGVFVDGPGAGKHIQ-  198 (248)
Q Consensus       123 ~~e~~ayLLkYDStHGkf~g~V~v~-e~~~L~inGk~I~v~~~~dP~~i~W~~~Gid--iVVE~TG~F~~~e~a~~HL~-  198 (248)
                      ++++++|||||||+||+|+++|+++ +++.|++||++|++++++||+++||+++|||  +||||||+|++++++++||+ 
T Consensus       170 d~~~~ayLLkyDSvhG~f~~~v~~~~~~~~liing~~I~v~~~~dP~~i~W~~~Gvd~aiVID~TG~f~~~~~~~~HL~~  249 (477)
T PRK08289        170 DLEKRASLLRRDSVHGPFNGTITVDEENNAIIANGNYIQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKS  249 (477)
T ss_pred             CHHHHHHHhhhhcCCCCCCCceEeecCCCEEEECCEEEEEEecCChHHCCchhcCCCeEEEEeCccccCCHHHHhhchhc
Confidence            9999999999999999999999986 3789999999999999999999999999999  99999999999999999999 


Q ss_pred             cCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--Ccc
Q 025797          199 AGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--KNW  242 (248)
Q Consensus       199 ~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~~~  242 (248)
                      +||||||||||+|+ |+|||||||||+.|+++ ++||||||  +||
T Consensus       250 ~GakkViiSAP~k~-d~p~iV~GVN~~~~~~~-~~IISnASCTTN~  293 (477)
T PRK08289        250 KGVAKVLLTAPGKG-DIKNIVHGVNHSDITDE-DKIVSAASCTTNA  293 (477)
T ss_pred             cCCCEEEECCCCCC-CCCeEEcccCHHHhCCC-CCEEECCccHHHH
Confidence            79999999999997 78999999999999887 89999999  888

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=100.00  E-value=3.7e-52  Score=348.30  Aligned_cols=148  Identities=51%  Similarity=0.824  Sum_probs=140.0

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD  166 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~d  166 (248)
                      +||+|||||||||.++|++..+  +.+++++|||+.++++++|||||||+||+|+++|+. +++.|++||++|+++++++
T Consensus         1 ikv~I~G~GriGr~v~~~~~~~--~~~~lvai~d~~~~~~~a~ll~~Ds~hg~~~~~v~~-~~~~l~i~g~~i~~~~~~~   77 (149)
T smart00846        1 IKVGINGFGRIGRLVLRALLER--PDIEVVAINDLTDPETLAHLLKYDSVHGRFPGEVEV-DEDGLIVNGKKIKVLAERD   77 (149)
T ss_pred             CEEEEECcCHHHHHHHHHHHhC--CCCEEEEeecCCCHHHHHHHhcccCCCCCCCCcEEE-eCCEEEECCEEEEEEecCC
Confidence            4899999999999999998754  579999999998999999999999999999999997 5788999999999999999


Q ss_pred             CCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC
Q 025797          167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM  239 (248)
Q Consensus       167 P~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS  239 (248)
                      |+++||+++|+||||||||.|+++++++.||++||||||||||+++ +++||||||||++|+++ ++||||||
T Consensus        78 p~~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~~~-~~~t~V~GvN~~~~~~~-~~iiS~aS  148 (149)
T smart00846       78 PANLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPAKD-ADKTFVYGVNHDEYDPE-DHIVSNAS  148 (149)
T ss_pred             hHHCcccccCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCCCC-CCceEEEeechHHcCCC-CCEEEcCC
Confidence            9999999999999999999999999999999999999999999986 55799999999999987 78999998

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=2e-52  Score=390.35  Aligned_cols=153  Identities=41%  Similarity=0.696  Sum_probs=144.6

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC-CChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEe
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS  163 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~-~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~  163 (248)
                      |++||||||||||||+++|+++++  +++++|+|||+ .++++++|||||||+||+|+++|++ +++.|+|||++|++++
T Consensus         1 m~~ki~INGfGRIGr~v~r~~~~~--~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~~-~~~~l~i~g~~i~~~~   77 (337)
T PTZ00023          1 MVVKLGINGFGRIGRLVFRAALER--EDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSV-TDGFLMIGSKKVHVFF   77 (337)
T ss_pred             CceEEEEECcChHHHHHHHHHHhc--CCeEEEEecCCCCChHHhhhhheeecCCCCCCCcEEe-cCCEEEECCeEEEEEe
Confidence            457999999999999999999875  46999999995 7999999999999999999999998 5789999999999999


Q ss_pred             cCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--Cc
Q 025797          164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--KN  241 (248)
Q Consensus       164 ~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~~  241 (248)
                      ++||++|||++.|+|||+||||.|++++.+..|+++|||||++|+|.++ |.|+||+||||++|++. ++||||||  +|
T Consensus        78 ~~dp~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iSap~~~-~vp~vV~gVN~~~~~~~-~~IISnasCTTn  155 (337)
T PTZ00023         78 EKDPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSAPPKD-DTPIYVMGVNHTQYDKS-QRIVSNASCTTN  155 (337)
T ss_pred             CCChhhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeCCCCCC-CCCeEEcccCHHHhCCC-CCEEECCccHHH
Confidence            9999999999999999999999999999999999999999999999875 67999999999999986 78999999  78


Q ss_pred             c
Q 025797          242 W  242 (248)
Q Consensus       242 ~  242 (248)
                      |
T Consensus       156 ~  156 (337)
T PTZ00023        156 C  156 (337)
T ss_pred             H
Confidence            7

>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed

Probab=100.00  E-value=3.5e-52  Score=388.77  Aligned_cols=155  Identities=61%  Similarity=1.055  Sum_probs=145.2

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD  166 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~d  166 (248)
                      +||||||||||||+++|+++++++.++++|+|||..++++++|||||||+||+|+++|++ +++.|++||++|++++++|
T Consensus         2 ~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~~~~~~~ayll~yDS~hg~~~~~v~~-~~~~l~v~g~~I~v~~~~d   80 (337)
T PRK07403          2 IRVAINGFGRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADISA-DENSITVNGKTIKCVSDRN   80 (337)
T ss_pred             eEEEEEccChHHHHHHHHHHhccCCCeEEEEecCCCCHHHHHHHHhhccCCCCCCCcEEE-cCCEEEECCEEEEEEEcCC
Confidence            699999999999999999887543579999999999999999999999999999999998 5788999999999999999


Q ss_pred             CCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--Ccc
Q 025797          167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--KNW  242 (248)
Q Consensus       167 P~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~~~  242 (248)
                      |+++||+++|+|||+||||.|++++.+..|+++|||||++|+|.++.|.|||||||||+.|++.+++||||||  +||
T Consensus        81 p~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCTTn~  158 (337)
T PRK07403         81 PLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLITAPGKGEDIGTYVVGVNHHEYDHEDHNIISNASCTTNC  158 (337)
T ss_pred             cccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeCCCCCCCCCceEecccCHHHhccCCCCEEECCcHHHHH
Confidence            9999999999999999999999999999999999999999999887567999999999999863378999999  887

>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.6e-51  Score=382.71  Aligned_cols=154  Identities=48%  Similarity=0.758  Sum_probs=146.1

Q ss_pred             eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797           86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR  165 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~  165 (248)
                      ++||+|||||||||+++|++.++.. ++++|+|||..+++++||||||||+||+|.++|+. +++.|.+||+.|+++.++
T Consensus         1 ~ikV~INGfGrIGR~v~ra~~~~~~-dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~~-~~~~~~v~g~~I~v~~~~   78 (335)
T COG0057           1 MIKVAINGFGRIGRLVARAALERDG-DIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEV-KDDALVVNGKGIKVLAER   78 (335)
T ss_pred             CcEEEEecCcHHHHHHHHHHHhCCC-CeEEEEEecCCCHHHHHHHHhhcccCCCCCCcccc-cCCeEEECCceEEEEecC
Confidence            3799999999999999999998743 69999999999999999999999999999999996 678999999999999999


Q ss_pred             CCCCCCCCCCcccEEecCcccccCchhhhHHHHc-CCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--Ccc
Q 025797          166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQA-GAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--KNW  242 (248)
Q Consensus       166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~-GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~~~  242 (248)
                      ||++|||.++|+|+||||||.|+++|++++||++ ||||||+|||+|+ |++||||||||+.|+++ ++||||||  +||
T Consensus        79 ~p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~-~~~~vv~gvn~~~~~~~-~~iVsnaSCTTNc  156 (335)
T COG0057          79 DPANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKD-DVATVVYGVNHNYYDAG-HTIVSNASCTTNC  156 (335)
T ss_pred             ChHHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCC-CccEEEEeccccccCCC-CcEEEEccchhhh
Confidence            9999999999999999999999999999999998 6999999999996 68999999999999996 99999999  998


Q ss_pred             c
Q 025797          243 G  243 (248)
Q Consensus       243 ~  243 (248)
                      -
T Consensus       157 L  157 (335)
T COG0057         157 L  157 (335)
T ss_pred             h
Confidence            4

>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=100.00  E-value=1.2e-51  Score=384.32  Aligned_cols=152  Identities=42%  Similarity=0.715  Sum_probs=143.3

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN  164 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~  164 (248)
                      |++||||||||||||+++|+++++  +++++|+|||..++++++|||||||+||+|+++|++ +++.|.+||++|+++++
T Consensus         1 m~~~i~inGfGRIGr~~~r~~~~~--~~~~vvaiNd~~~~~~~ayll~yDs~hg~~~~~v~~-~~~~l~v~g~~I~v~~~   77 (331)
T PRK15425          1 MTIKVGINGFGRIGRIVFRAAQKR--SDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEV-KDGHLIVNGKKIRVTAE   77 (331)
T ss_pred             CceEEEEEeeChHHHHHHHHHHHC--CCCEEEEEecCCCHHHHHHHHccccCCCCcCCcEEe-cCCEEEECCeEEEEEEc
Confidence            357999999999999999998875  579999999999999999999999999999999998 57889999999999999


Q ss_pred             CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--Ccc
Q 025797          165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--KNW  242 (248)
Q Consensus       165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~~~  242 (248)
                      +||+++||+++|+|||+||||.|++++.+.+||++|||||++|+|.++ +.|+||+||||++|++  ++||||||  +||
T Consensus        78 ~dp~~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~~-~vp~vV~gVN~~~~~~--~~IISnaSCtTn~  154 (331)
T PRK15425         78 RDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKD-NTPMFVKGANFDKYAG--QDIVSNASCTTNC  154 (331)
T ss_pred             CChhhCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCCCCC-CCCEEEcccCHHHcCC--CCEEECCCcHHHH
Confidence            999999999999999999999999999999999999999999999875 6799999999999964  58999999  887

>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=1.2e-51  Score=385.79  Aligned_cols=153  Identities=25%  Similarity=0.429  Sum_probs=143.2

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC-CChhhhhhhccccCcCcccC-ceEEEecCCcEEECC-eEEEE
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFK-ADVKIVDNETISVDG-KLIKV  161 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~-~~~e~~ayLLkYDStHGkf~-g~V~v~e~~~L~inG-k~I~v  161 (248)
                      |++||||||||||||+++|+++++  +++++|+|||+ .++++++|||||||+||+|+ ++|++ +++.|+||| ++|++
T Consensus         1 m~~kv~INGfGRIGR~v~R~~~~~--~~~~ivaiNd~~~~~~~~ayll~yDS~hG~~~~~~v~~-~~~~l~i~g~~~i~~   77 (342)
T PTZ00353          1 LPITVGINGFGPVGKAVLFASLTD--PLVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIRV-VGEQIVLNGTQKIRV   77 (342)
T ss_pred             CCeEEEEECCChHHHHHHHHHHhc--CCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCeEEE-cCCEEecCCCeEEEE
Confidence            457999999999999999999875  57999999996 79999999999999999996 69997 578999999 89999


Q ss_pred             EecCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--
Q 025797          162 VSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--  239 (248)
Q Consensus       162 ~~~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--  239 (248)
                      ++++||+++||+++|+||||||||.|++.++++.||++||||||||+|++  |.|||||||||+.|++. ++||||||  
T Consensus        78 ~~~~dp~~~~w~~~gvDiVie~TG~f~~~~~a~~hl~~Gakkviisaps~--d~p~vV~gVN~~~~~~~-~~IISnaSCT  154 (342)
T PTZ00353         78 SAKHDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFVAGQSA--DAPTVMAGSNDERLSAS-LPVCCAGAPI  154 (342)
T ss_pred             EecCCcccCcccccCCCEEEEcccccccHhhhhhhhhcCCCcEEEeCCCC--CCCeEEecCChHHcCCC-CCEEECCCHH
Confidence            99999999999999999999999999999999999999999999999996  47999999999999987 88999999  


Q ss_pred             Cccc
Q 025797          240 KNWG  243 (248)
Q Consensus       240 ~~~~  243 (248)
                      +||=
T Consensus       155 Tn~L  158 (342)
T PTZ00353        155 AVAL  158 (342)
T ss_pred             HHHH
Confidence            8883

>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated

Probab=100.00  E-value=4.6e-51  Score=382.00  Aligned_cols=154  Identities=47%  Similarity=0.705  Sum_probs=143.8

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN  164 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~  164 (248)
                      |++||||||||||||+++|+++++  +++++|+|||+.++++++|||||||+||+|+++|++ +++.|++||++|+++++
T Consensus         1 m~~ki~INGfGRIGR~~~r~~~~~--~~~~vvaINd~~~~~~~ayll~yDS~hG~~~~~v~~-~~~~l~v~g~~I~v~~~   77 (343)
T PRK07729          1 MKTKVAINGFGRIGRMVFRKAIKE--SAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEA-FEDHLLVDGKKIRLLNN   77 (343)
T ss_pred             CceEEEEECcChHHHHHHHHHhhc--CCcEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEe-cCCEEEECCEEEEEEEc
Confidence            568999999999999999999875  469999999999999999999999999999999998 57899999999999999


Q ss_pred             CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--Ccc
Q 025797          165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--KNW  242 (248)
Q Consensus       165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~~~  242 (248)
                      +||+++||+++|+|||+||||.|++++.+..|+++|||||++|||.++ +++++||||||++|++..++||||||  +||
T Consensus        78 ~dp~~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~d-~d~~lV~gVN~~~~~~~~~~IISnaSCTTn~  156 (343)
T PRK07729         78 RDPKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAPGKN-EDVTIVVGVNEDQLDIEKHTIISNASCTTNC  156 (343)
T ss_pred             CChhhCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeCCCCCC-CCCcEEecccHHHhccCCCCEEECCchHHHH
Confidence            999999999999999999999999999999999999999999999876 45678999999999873278999999  777

>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I

Probab=100.00  E-value=2.5e-50  Score=374.78  Aligned_cols=152  Identities=49%  Similarity=0.789  Sum_probs=142.8

Q ss_pred             eEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCC-cEEECCe-EEEEEecC
Q 025797           88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNE-TISVDGK-LIKVVSNR  165 (248)
Q Consensus        88 kV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~-~L~inGk-~I~v~~~~  165 (248)
                      ||||||||||||+++|+++++++.++++|+|||+.++++++|||||||+||+|+++|++ +++ .|.+||+ +|++++++
T Consensus         1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~~~~~~~ayll~yDS~hg~~~~~v~~-~~~~~l~i~g~~~i~v~~~~   79 (327)
T TIGR01534         1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDLTDLEYLAYLLKYDSVHGRFEGEVTA-DEDKGLVVNGKFVIVVASER   79 (327)
T ss_pred             CEEEEccChHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHhcccCCCCCCCCcEEe-cCCceEEECCeEEEEEEecC
Confidence            69999999999999999997643479999999999999999999999999999999998 466 7999999 99999999


Q ss_pred             CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--Ccc
Q 025797          166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--KNW  242 (248)
Q Consensus       166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~~~  242 (248)
                      ||+++||+++|+|||+||||.|++++.+..|+++|||||++|||.++ ++||||+||||+.|++. ++||||+|  +||
T Consensus        80 dp~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap~~d-~~plvV~gVN~~~~~~~-~~IISn~sCtTn~  156 (327)
T TIGR01534        80 DPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAPSKG-DAPTIVYGVNHDEYDPE-ERIISNASCTTNC  156 (327)
T ss_pred             CcccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeCCCCCC-CCCeecCCCCHHHhCCC-CCEEecCCchHHH
Confidence            99999999999999999999999999999999999999999999875 47999999999999986 78999999  776

The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.

>PLN02272 glyceraldehyde-3-phosphate dehydrogenase

Probab=100.00  E-value=3.4e-49  Score=377.36  Aligned_cols=151  Identities=46%  Similarity=0.790  Sum_probs=142.5

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC-CChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR  165 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~-~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~  165 (248)
                      +||||||||||||+++|+++++  .++++|+|||+ .+.++++|||||||+||+|+++|++.+++.|.+||++|+|++++
T Consensus        86 ~kvgInGFGRIGR~v~R~~~~~--~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I~V~~~~  163 (421)
T PLN02272         86 TKIGINGFGRIGRLVLRIATSR--DDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTSKR  163 (421)
T ss_pred             eEEEEECcCHHHHHHHHHHhhc--CCcEEEEecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEEEEEecC
Confidence            7999999999999999998864  46999999996 89999999999999999999999964578999999999999999


Q ss_pred             CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--Ccc
Q 025797          166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--KNW  242 (248)
Q Consensus       166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~~~  242 (248)
                      ||+++||+++|+|||+||||.|++++.+..|+++|||||||++|.+  |.|+||+||||++|++. ++||||||  +||
T Consensus       164 dp~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap~~--dvPlvV~gVN~~~l~~~-~~IISnaSCTTn~  239 (421)
T PLN02272        164 DPAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPSA--DAPMFVVGVNEKTYKPN-MNIVSNASCTTNC  239 (421)
T ss_pred             CcccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCCCC--CCCeEEeccCHHHhCCC-CCeeeCCCcHHHH
Confidence            9999999999999999999999999999999999999999999975  57999999999999987 78999999  787

>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=4e-47  Score=354.53  Aligned_cols=155  Identities=39%  Similarity=0.619  Sum_probs=143.8

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCC-CCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRK-DSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR  165 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~-~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~  165 (248)
                      +||||||||||||+++|+++++. ..++++|+|||..++++++|||||||+||+|+++|+. +++.|++||++|++++++
T Consensus         2 ~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~~-~~~~l~v~g~~i~v~~~~   80 (336)
T PRK13535          2 IRVAINGFGRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVRQ-ERDQLFVGDDAIRLLHER   80 (336)
T ss_pred             eEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEe-cCCEEEECCEEEEEEEcC
Confidence            68999999999999999999863 2579999999999999999999999999999999997 678999999999999999


Q ss_pred             CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--Cccc
Q 025797          166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--KNWG  243 (248)
Q Consensus       166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~~~~  243 (248)
                      +|+++||+++|+|+|+||||.|++++.+..|+++|||||++|+|++.++.++|||||||+.|++. +.||||||  +||-
T Consensus        81 ~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap~~~d~~~~vV~gVN~~~~~~~-~~IISnasCTTn~L  159 (336)
T PRK13535         81 DIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNHDQLRAE-HRIVSNASCTTNCI  159 (336)
T ss_pred             CcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCCcccCCCCeEEeCcCHHHhCcC-CCEEECCchHHHHH
Confidence            99999999999999999999999999999999999999999999862123599999999999986 88999999  8873

>PLN02358 glyceraldehyde-3-phosphate dehydrogenase

Probab=100.00  E-value=5.8e-47  Score=353.64  Aligned_cols=153  Identities=42%  Similarity=0.728  Sum_probs=143.2

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC-CChhhhhhhccccCcCcccCc-eEEEecCCcEEECCeEEEEE
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKA-DVKIVDNETISVDGKLIKVV  162 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~-~~~e~~ayLLkYDStHGkf~g-~V~v~e~~~L~inGk~I~v~  162 (248)
                      +++||||||||||||+.+|.+.+.  +++++|+|||+ .++++++|||||||+||+|++ +|++++++.|.+||++|+++
T Consensus         4 ~~lrVaI~G~GrIGr~~~r~~~~~--~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~i~v~   81 (338)
T PLN02358          4 KKIRIGINGFGRIGRLVARVVLQR--DDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF   81 (338)
T ss_pred             CceEEEEEeecHHHHHHHHHHhhC--CCcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEEEEEE
Confidence            458999999999999999998764  57999999996 799999999999999999996 99985667899999999999


Q ss_pred             ecCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--C
Q 025797          163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--K  240 (248)
Q Consensus       163 ~~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~  240 (248)
                      +++||+++||+++|+|||+||||.|++++.+..|+++|||||+||+|++  |.|+|||||||+.|++. ++||||||  +
T Consensus        82 ~~~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap~~--dvp~iV~gVN~~~~~~~-~~IISnasCTT  158 (338)
T PLN02358         82 GIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK--DAPMFVVGVNEHEYKSD-LDIVSNASCTT  158 (338)
T ss_pred             EcCCcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCCCC--CCCeEecCcCHHHhCCC-CCEEECCCchH
Confidence            9999999999999999999999999999999999999999999999986  57999999999999986 89999999  7


Q ss_pred             cc
Q 025797          241 NW  242 (248)
Q Consensus       241 ~~  242 (248)
                      ||
T Consensus       159 n~  160 (338)
T PLN02358        159 NC  160 (338)
T ss_pred             HH
Confidence            77

>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated

Probab=100.00  E-value=1.2e-46  Score=351.14  Aligned_cols=154  Identities=34%  Similarity=0.582  Sum_probs=142.6

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC-CChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEe
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS  163 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~-~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~  163 (248)
                      |++||+|||||||||+++|++.++  .++++|+|||+ .++++++||||||||||+|+++|+. +++.|.+||++|++++
T Consensus         1 m~ikigInG~GRiGr~v~r~~~~~--~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~-~g~~l~~~g~~i~v~~   77 (334)
T PRK08955          1 MTIKVGINGFGRIGRLALRAAWDW--PELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTA-EGDAIVINGKRIRTTQ   77 (334)
T ss_pred             CCeEEEEECcCHHHHHHHHHHHhC--CCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEE-cCCEEEECCEEEEEEe
Confidence            458999999999999999998874  46999999995 7999999999999999999999997 5788999999999999


Q ss_pred             cCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--Cc
Q 025797          164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--KN  241 (248)
Q Consensus       164 ~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~~  241 (248)
                      +++|+++||.  |+||||||||.|++++.+..|+++|||||++|+|.+++|.|+|||||||+.|++..++||||||  +|
T Consensus        78 ~~~~~~~~w~--gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCtTn  155 (334)
T PRK08955         78 NKAIADTDWS--GCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPVKEEGVLNIVMGVNDHLFDPAIHPIVTAASCTTN  155 (334)
T ss_pred             cCChhhCCcc--CCCEEEEccchhhcHHHHHHHHHCCCEEEEECCCCCCCCCceEecccCHHHhcccCCCEEECCccHHH
Confidence            9999999997  9999999999999999999999999999999999887567999999999999872268999999  78


Q ss_pred             cc
Q 025797          242 WG  243 (248)
Q Consensus       242 ~~  243 (248)
                      |=
T Consensus       156 ~L  157 (334)
T PRK08955        156 CL  157 (334)
T ss_pred             HH
Confidence            73

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=100.00  E-value=7.2e-45  Score=337.74  Aligned_cols=153  Identities=39%  Similarity=0.677  Sum_probs=142.2

Q ss_pred             eEEEeCCChhhHHHHHHHhhCC-CCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCC
Q 025797           88 KVAINGFGRIGRNFLRCWHGRK-DSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD  166 (248)
Q Consensus        88 kV~INGFGRIGRlvlR~~~~~~-~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~d  166 (248)
                      ||||||||||||+++|+++++. ..++++|+|||..+.++++|||||||+||+|+++|+. +++.|++||+.|+++++++
T Consensus         1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~-~~~~l~v~g~~i~v~~~~~   79 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKV-DGDCLHVNGDCIRVLHSPT   79 (325)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEE-eCCEEEECCeEEEEEEcCC
Confidence            6999999999999999998864 3569999999999999999999999999999999997 5789999999999999999


Q ss_pred             CCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--Ccc
Q 025797          167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--KNW  242 (248)
Q Consensus       167 P~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~~~  242 (248)
                      |+++||+++|+|+|+||||.|.+.+.+.+||++||++|++|+|.+.++.++|||||||+.|++. ++||||||  +||
T Consensus        80 p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~~~d~~~~vV~gVN~~~~~~~-~~IISnasCtTn~  156 (325)
T TIGR01532        80 PEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPGASDLDATIVYGVNQQDLSAE-HTIVSNASCTTNC  156 (325)
T ss_pred             hhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCCcCCCCceEEeccCHHHhCCC-CCEEeCCCcHHHH
Confidence            9999999999999999999999999999999999999999999863223589999999999986 88999999  777

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>KOG0657 consensus Glyceraldehyde 3-phosphate dehydrogenase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=5.4e-38  Score=285.68  Aligned_cols=136  Identities=43%  Similarity=0.734  Sum_probs=127.6

Q ss_pred             hhHHHHHHHhhCCCCCeEEEEEeCC-CChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCCCCCCCCCCC
Q 025797           97 IGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAEL  175 (248)
Q Consensus        97 IGRlvlR~~~~~~~~~l~iVaIND~-~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~dP~~i~W~~~  175 (248)
                      |||+++   + +.  .+++|+|||| +++++++||||||||||+|++++++ ++.++++||++|++++++||..|+|.+.
T Consensus         1 ig~~~~---~-~~--~v~vv~indpfi~~~~~~y~~kydsthG~f~g~~k~-~~~~~i~~G~~i~~~~~~~p~~i~w~~~   73 (285)
T KOG0657|consen    1 IGRLVL---Q-RN--SVDVVAINDPFIDLNYLAYMLKYDSTHGKFHGTVKA-ENFKLIINGNPITIFQFRDPAKIPWGAK   73 (285)
T ss_pred             CCcccc---c-cC--CcccccccCcccccccccccccccccCCccccceee-cCCceeecCceEEeecccCcccCccccc
Confidence            688887   2 32  3999999998 8999999999999999999999998 6888999999999999999999999999


Q ss_pred             cccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--Ccc
Q 025797          176 GIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--KNW  242 (248)
Q Consensus       176 GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~~~  242 (248)
                      |+|+|+|+||+|++.+++..|+++||||||||||++  |+||||||||+++|+++ ..||||||  +||
T Consensus        74 g~~~v~e~tg~f~t~e~~~~~~~~gakkviisaps~--dapmfv~gVn~~~y~~~-~~iiSnascttnc  139 (285)
T KOG0657|consen   74 GADIVVESTGVFTTMEKPGKHFQGGAKKVIISAPSA--DAPMFVMGVNGEKYDNS-LDIISNASCTTNC  139 (285)
T ss_pred             cceeEeeccccccccccccccccccceEEEeccccC--CCCcccccccccccccc-cceeechhhhhcc
Confidence            999999999999999999999999999999999996  68999999999999998 66999999  997

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=99.96  E-value=2.9e-29  Score=234.41  Aligned_cols=136  Identities=18%  Similarity=0.166  Sum_probs=116.0

Q ss_pred             EEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChh---hhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797           89 VAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVK---NASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR  165 (248)
Q Consensus        89 V~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e---~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~  165 (248)
                      |||||||||||.++|++..+  +++++|+||| .+++   +++|+++|||+|+.+...++. +++.|.++|+        
T Consensus         1 VaInG~GrIGr~varav~~~--~d~elVaVnD-~~~~~~a~lA~~lgyds~~~~~~~~~~~-~~~~l~v~g~--------   68 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQ--DDMKLVGVTK-TSPDFEAYRAKELGIPVYAASEEFIPRF-EEAGIEVAGT--------   68 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhC--CCcEEEEEec-CChHHHHHHHHHhCCCEEeecCCcceEe-ccCceEecCC--------
Confidence            69999999999999998764  5799999999 4666   888999999999555447776 4667888775        


Q ss_pred             CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--Ccc
Q 025797          166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--KNW  242 (248)
Q Consensus       166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~~~  242 (248)
                       |+++.   .++|+|+||||.|+..+.+..|++.|+|+||+++|+++..+++|||||||++|++. + ||||||  +||
T Consensus        69 -~eeLl---~~vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p~~~~~~~tfv~gvN~~~~~~~-~-~vs~aSCtTn~  141 (333)
T TIGR01546        69 -LEDLL---EKVDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGEKAEVADVSFVAQANYEAALGK-D-YVRVVSCNTTG  141 (333)
T ss_pred             -HHHHh---hcCCEEEECCCCCCChhhHHHHHhCCcCEEEECCCCCCCCCceEEeeeCHHHcCcC-c-eEEecCchHhh
Confidence             55564   37999999999999999999999999999999999875335899999999999865 5 999999  777

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=99.85  E-value=3.1e-21  Score=179.90  Aligned_cols=137  Identities=21%  Similarity=0.231  Sum_probs=108.2

Q ss_pred             eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhcc---ccCcCcccCceEEEecCCcEEECCeEEEEE
Q 025797           86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLK---YDSLLGTFKADVKIVDNETISVDGKLIKVV  162 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLk---YDStHGkf~g~V~v~e~~~L~inGk~I~v~  162 (248)
                      ++||||||||||||.++|++.++  +++++|+|+|. +.++.+||++   || .||+++..+...++..+.+.+.     
T Consensus         1 ~ikVaI~G~GrIGr~va~al~~~--~d~eLvav~d~-~~~~~~~la~~~G~~-~~~~~~~~~~~~~~~~i~V~~~-----   71 (341)
T PRK04207          1 MIKVGVNGYGTIGKRVADAVAAQ--PDMELVGVAKT-KPDYEARVAVEKGYP-LYVADPEREKAFEEAGIPVAGT-----   71 (341)
T ss_pred             CeEEEEECCCHHHHHHHHHHhcC--CCcEEEEEECC-ChHHHHHHHHhcCCC-ccccCccccccccCCceEEcCC-----
Confidence            37999999999999999998764  57999999996 5799999988   44 6777766655112333444443     


Q ss_pred             ecCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCC--CeEEeecCCCCCCCCCCeEEeecC-
Q 025797          163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADI--PTYVVGVNEKDYDHEVANIVRSWM-  239 (248)
Q Consensus       163 ~~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~--ptiV~GVN~~~y~~~~~~IISnAS-  239 (248)
                          ++++.   .++|+|+||||.+...+.+..|+++| ++||+++|.+. +.  .+||+|||++.|... + ||+|+| 
T Consensus        72 ----~~el~---~~vDVVIdaT~~~~~~e~a~~~~~aG-k~VI~~~~~~~-~~~~~~~v~~vN~~~~~~~-~-~v~~~sC  140 (341)
T PRK04207         72 ----IEDLL---EKADIVVDATPGGVGAKNKELYEKAG-VKAIFQGGEKA-EVAGVSFNALANYEEALGK-D-YVRVVSC  140 (341)
T ss_pred             ----hhHhh---ccCCEEEECCCchhhHHHHHHHHHCC-CEEEEcCCCCC-CCCCCcEEeeECHHHhCCC-C-cEEccCh
Confidence                33332   37999999999999999999999999 99999999864 43  358999999999764 4 899998 


Q ss_pred             -Ccc
Q 025797          240 -KNW  242 (248)
Q Consensus       240 -~~~  242 (248)
                       +||
T Consensus       141 tT~~  144 (341)
T PRK04207        141 NTTG  144 (341)
T ss_pred             HHHH
Confidence             555

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=98.84  E-value=7.2e-09  Score=96.47  Aligned_cols=122  Identities=27%  Similarity=0.341  Sum_probs=85.1

Q ss_pred             eeEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797           87 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR  165 (248)
Q Consensus        87 vkV~INGF-GRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~  165 (248)
                      +||+|.|- |.+|+.++|++.++.-+.++++++-......                        ..+..+|..+.+.   
T Consensus         2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g------------------------~~l~~~g~~i~v~---   54 (334)
T PRK14874          2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAG------------------------KELSFKGKELKVE---   54 (334)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCC------------------------CeeeeCCceeEEe---
Confidence            58989884 9999999999987533456777663221110                        1111233334343   


Q ss_pred             CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEE---cCCCCCCCCCeEEeecCCCCCCCC-CCeEEeecC
Q 025797          166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII---TAPAKGADIPTYVVGVNEKDYDHE-VANIVRSWM  239 (248)
Q Consensus       166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVII---SAPsk~~D~ptiV~GVN~~~y~~~-~~~IISnAS  239 (248)
                      |+.+.+|.  |+|+||.|||.+.+++-+.+|+++|+  |||   +++-.+++.|.+|.+||++.|+.. +++||||++
T Consensus        55 d~~~~~~~--~vDvVf~A~g~g~s~~~~~~~~~~G~--~VIDlS~~~R~~~~~p~~lpevn~~~i~~~~~~~iVanp~  128 (334)
T PRK14874         55 DLTTFDFS--GVDIALFSAGGSVSKKYAPKAAAAGA--VVIDNSSAFRMDPDVPLVVPEVNPEALAEHRKKGIIANPN  128 (334)
T ss_pred             eCCHHHHc--CCCEEEECCChHHHHHHHHHHHhCCC--EEEECCchhhcCCCCCeEcCCcCHHHHhhhhcCCeEECcc
Confidence            34445784  89999999999999999999999998  667   333332367999999999999753 137999988

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=98.46  E-value=4.1e-07  Score=85.30  Aligned_cols=121  Identities=26%  Similarity=0.339  Sum_probs=79.2

Q ss_pred             eEEEeC-CChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCC
Q 025797           88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD  166 (248)
Q Consensus        88 kV~ING-FGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~d  166 (248)
                      ||+|.| -|.+|+.++|++.++.-+.++++.+-.....             |           ..+...|+.+.+. .-+
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~-------------g-----------~~~~~~~~~~~~~-~~~   55 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSA-------------G-----------RKVTFKGKELEVN-EAK   55 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccC-------------C-----------CeeeeCCeeEEEE-eCC
Confidence            588888 7999999999987643334555544211000             1           0111122222221 112


Q ss_pred             CCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCC---CCCCCCCeEEeecCCCCCCCC-CCeEEeecC
Q 025797          167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGADIPTYVVGVNEKDYDHE-VANIVRSWM  239 (248)
Q Consensus       167 P~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAP---sk~~D~ptiV~GVN~~~y~~~-~~~IISnAS  239 (248)
                      +.  .|  .++|+|+.|||.+.+.+-+..|+++|+  +||..+   ..++|.|.+|.+||++.++.. .+.||||++
T Consensus        56 ~~--~~--~~~D~v~~a~g~~~s~~~a~~~~~~G~--~VID~ss~~R~~~~~p~~vpevN~~~i~~~~~~~iianp~  126 (339)
T TIGR01296        56 IE--SF--EGIDIALFSAGGSVSKEFAPKAAKCGA--IVIDNTSAFRMDPDVPLVVPEVNLEDLKEFNTKGIIANPN  126 (339)
T ss_pred             hH--Hh--cCCCEEEECCCHHHHHHHHHHHHHCCC--EEEECCHHHhCCCCCCEEeCCcCHHHHhhCccCCEEECCC
Confidence            22  35  379999999999999999999999998  467433   333368999999999999753 145999987

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=97.55  E-value=0.00016  Score=67.83  Aligned_cols=125  Identities=25%  Similarity=0.222  Sum_probs=81.3

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhh--hhhhccccCcCcccCceEEEecCCcEEECCeEEEEE
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKN--ASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVV  162 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~--~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~  162 (248)
                      .++||+|.|.|+||+.+++.+..  .+.++++++-|. +.+.  +..--+    +|.   ....++=+.|.         
T Consensus         3 ~klrVAIIGtG~IGt~hm~~l~~--~~~velvAVvdi-d~es~gla~A~~----~Gi---~~~~~~ie~LL---------   63 (302)
T PRK08300          3 SKLKVAIIGSGNIGTDLMIKILR--SEHLEPGAMVGI-DPESDGLARARR----LGV---ATSAEGIDGLL---------   63 (302)
T ss_pred             CCCeEEEEcCcHHHHHHHHHHhc--CCCcEEEEEEeC-ChhhHHHHHHHH----cCC---CcccCCHHHHH---------
Confidence            36899999999999987877664  357999999887 2221  111111    221   11100000110         


Q ss_pred             ecCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCC-CCeEEeec
Q 025797          163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHE-VANIVRSW  238 (248)
Q Consensus       163 ~~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~-~~~IISnA  238 (248)
                           +.-+|.  ++|+|+++||.....+-+...+++|. .||--.|..  ..|.+|-.||.+..... ..+||++.
T Consensus        64 -----~~~~~~--dIDiVf~AT~a~~H~e~a~~a~eaGk-~VID~sPA~--~~PlvVP~VN~~~~~~~~~~~iia~p  130 (302)
T PRK08300         64 -----AMPEFD--DIDIVFDATSAGAHVRHAAKLREAGI-RAIDLTPAA--IGPYCVPAVNLDEHLDAPNVNMVTCG  130 (302)
T ss_pred             -----hCcCCC--CCCEEEECCCHHHHHHHHHHHHHcCC-eEEECCccc--cCCcccCcCCHHHHhcccCCCEEECc
Confidence                 112453  58999999999988888888888884 577777875  57999999998877532 14677764

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=97.42  E-value=0.00035  Score=64.66  Aligned_cols=38  Identities=13%  Similarity=0.272  Sum_probs=31.0

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCC
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG  122 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~  122 (248)
                      |..||+|.|||.||+.+++.+.......+++++|++..
T Consensus         1 ~~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~   38 (267)
T PRK13301          1 MTHRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNA   38 (267)
T ss_pred             CceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCC
Confidence            45799999999999999998764333458999999873

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=97.41  E-value=0.0003  Score=66.02  Aligned_cols=134  Identities=22%  Similarity=0.282  Sum_probs=75.9

Q ss_pred             ceeeEEEeC-CChhhHHHHHHHhhCCCCCeEEEEE-eCCCChhh-hhhhccccCcCcccCceEEEecCCcEEECCeEEEE
Q 025797           85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV-NDSGGVKN-ASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKV  161 (248)
Q Consensus        85 ~~vkV~ING-FGRIGRlvlR~~~~~~~~~l~iVaI-ND~~~~e~-~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v  161 (248)
                      |++||+|.| .|.+|+.++|++.++  +.++++.+ ........ +..++.+. .+|.+.+..            +.+.+
T Consensus         2 ~~~~V~I~GatG~iG~~l~~~L~~~--p~~el~~~~~s~~~~G~~~~~~~~~~-~~~~~~~~~------------~~~~v   66 (349)
T PRK08664          2 MKLKVGILGATGMVGQRFVQLLANH--PWFEVTALAASERSAGKTYGEAVRWQ-LDGPIPEEV------------ADMEV   66 (349)
T ss_pred             CCcEEEEECCCCHHHHHHHHHHHcC--CCceEEEEEcChhhcCCccccccccc-ccccccccc------------cceEE
Confidence            568999998 899999999998865  45788888 43311111 11111110 001111110            01222


Q ss_pred             EecCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC--CCCCCCeEEeecCCCCCCC-C--------
Q 025797          162 VSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA--KGADIPTYVVGVNEKDYDH-E--------  230 (248)
Q Consensus       162 ~~~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs--k~~D~ptiV~GVN~~~y~~-~--------  230 (248)
                       ...+|+.  |  .++|+|+.|++.-...+-+..-++.|++.|.+|+--  ++ +.|.++.++|.+.|.. +        
T Consensus        67 -~~~~~~~--~--~~~DvVf~a~p~~~s~~~~~~~~~~G~~vIDls~~fR~~~-~~~~~~p~vn~~~yg~~e~~~~~~~~  140 (349)
T PRK08664         67 -VSTDPEA--V--DDVDIVFSALPSDVAGEVEEEFAKAGKPVFSNASAHRMDP-DVPLVIPEVNPEHLELIEVQRKRRGW  140 (349)
T ss_pred             -EeCCHHH--h--cCCCEEEEeCChhHHHHHHHHHHHCCCEEEECCchhcCCC-CCCcCChhhCHHHHcChHhhHhhccC
Confidence             2334554  3  278999999887544433333335677655555422  22 5678999999876631 1        


Q ss_pred             CCeEEeecC
Q 025797          231 VANIVRSWM  239 (248)
Q Consensus       231 ~~~IISnAS  239 (248)
                      +.+||||++
T Consensus       141 ~~~iVa~p~  149 (349)
T PRK08664        141 DGFIVTNPN  149 (349)
T ss_pred             CceEEEccC
Confidence            025999988

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=97.23  E-value=0.00048  Score=62.53  Aligned_cols=33  Identities=30%  Similarity=0.562  Sum_probs=28.6

Q ss_pred             eeEEEeC-CChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797           87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDS  121 (248)
Q Consensus        87 vkV~ING-FGRIGRlvlR~~~~~~~~~l~iVaIND~  121 (248)
                      +||+|.| +||+|+.++|.+.+.  +++++|++-|.
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~--~~~elvav~d~   35 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAA--EGLQLVAAFER   35 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEec
Confidence            6999999 799999999988754  57999999884

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=97.18  E-value=0.0011  Score=60.07  Aligned_cols=32  Identities=38%  Similarity=0.426  Sum_probs=24.6

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND  120 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND  120 (248)
                      +||+|.|+|+||+.+++.+...  +.+++++|-+
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~--~~~~l~~v~~   33 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHD--PDLRVDWVIV   33 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhC--CCceEEEEEE
Confidence            6999999999999999987653  3456655543

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=96.93  E-value=0.002  Score=59.89  Aligned_cols=122  Identities=25%  Similarity=0.238  Sum_probs=78.8

Q ss_pred             eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhh--hhhhccccCcCcccCceEEEecCCcEEECCeEEEEEe
Q 025797           86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKN--ASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS  163 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~--~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~  163 (248)
                      ++||||.|.|+||+..++.+.+  .+.+++++|-|+ +.+.  ++.--+    +|.   .....+-+.+.-         
T Consensus         1 klrVAIIG~G~IG~~h~~~ll~--~~~~elvaV~d~-d~es~~la~A~~----~Gi---~~~~~~~e~ll~---------   61 (285)
T TIGR03215         1 KVKVAIIGSGNIGTDLMYKLLR--SEHLEMVAMVGI-DPESDGLARARE----LGV---KTSAEGVDGLLA---------   61 (285)
T ss_pred             CcEEEEEeCcHHHHHHHHHHHh--CCCcEEEEEEeC-CcccHHHHHHHH----CCC---CEEECCHHHHhc---------
Confidence            3689999999999988776664  346899999886 2221  111111    121   111100011110         


Q ss_pred             cCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCC-CCeEEeecC
Q 025797          164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHE-VANIVRSWM  239 (248)
Q Consensus       164 ~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~-~~~IISnAS  239 (248)
                                +-++|+|++||+.....+-+...+++| |.||.-.|..  ..|.+|--||-+..... ..+||++..
T Consensus        62 ----------~~dIDaV~iaTp~~~H~e~a~~al~aG-k~VIdekPa~--~~plvvp~VN~~~~~~~~~~~iv~c~~  125 (285)
T TIGR03215        62 ----------NPDIDIVFDATSAKAHARHARLLAELG-KIVIDLTPAA--IGPYVVPAVNLDEHLDAPNVNMVTCGG  125 (285)
T ss_pred             ----------CCCCCEEEECCCcHHHHHHHHHHHHcC-CEEEECCccc--cCCccCCCcCHHHHhcCcCCCEEEcCc
Confidence                      126899999999998888888888887 4677778874  56999999998776531 146777654

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=96.90  E-value=0.0009  Score=53.36  Aligned_cols=112  Identities=28%  Similarity=0.308  Sum_probs=67.7

Q ss_pred             eEEEeC-CChhhHHHHHHHhhCCCCCeEEEEEeCCCC--hhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797           88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGG--VKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN  164 (248)
Q Consensus        88 kV~ING-FGRIGRlvlR~~~~~~~~~l~iVaIND~~~--~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~  164 (248)
                      ||+|-| .|.+|+.++|.+.++  +.++++.+-....  -+.+..      .++.+.+.-.             ..+ .+
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~h--p~~e~~~~~~~~~~~g~~~~~------~~~~~~~~~~-------------~~~-~~   58 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEH--PDFELVALVSSSRSAGKPLSE------VFPHPKGFED-------------LSV-ED   58 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT--STEEEEEEEESTTTTTSBHHH------TTGGGTTTEE-------------EBE-EE
T ss_pred             CEEEECCCCHHHHHHHHHHhcC--CCccEEEeeeeccccCCeeeh------hccccccccc-------------eeE-ee
Confidence            799999 999999999999875  5688887755422  122222      2222211111             111 11


Q ss_pred             CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCC--CCCCCeEEeecCCCC
Q 025797          165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAK--GADIPTYVVGVNEKD  226 (248)
Q Consensus       165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk--~~D~ptiV~GVN~~~  226 (248)
                      -+++.+    .++|+|+.||+-....+-+...++.|+ +||=.++.-  +++.|..|-.||.+.
T Consensus        59 ~~~~~~----~~~Dvvf~a~~~~~~~~~~~~~~~~g~-~ViD~s~~~R~~~~~~~~~pevn~~~  117 (121)
T PF01118_consen   59 ADPEEL----SDVDVVFLALPHGASKELAPKLLKAGI-KVIDLSGDFRLDDDVPYGLPEVNREQ  117 (121)
T ss_dssp             TSGHHH----TTESEEEE-SCHHHHHHHHHHHHHTTS-EEEESSSTTTTSTTSEEE-HHHHHHH
T ss_pred             cchhHh----hcCCEEEecCchhHHHHHHHHHhhCCc-EEEeCCHHHhCCCCCCEEeCCcCHHH
Confidence            233332    489999999999999988888889998 454333321  124566666666544

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK06270 homoserine dehydrogenase; Provisional

Probab=96.90  E-value=0.0026  Score=59.72  Aligned_cols=37  Identities=30%  Similarity=0.560  Sum_probs=30.0

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCC-------CCCeEEEEEeCC
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRK-------DSPLDVVVVNDS  121 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~-------~~~l~iVaIND~  121 (248)
                      |.+||+|.|||.||+.++|.+.++.       +.++++|+|-|.
T Consensus         1 m~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~   44 (341)
T PRK06270          1 MEMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADS   44 (341)
T ss_pred             CeEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeC
Confidence            5689999999999999999876532       226899999774

>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms)

Probab=96.89  E-value=0.003  Score=59.12  Aligned_cols=132  Identities=20%  Similarity=0.244  Sum_probs=77.7

Q ss_pred             eeEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEEeCCC-Ch-hhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEe
Q 025797           87 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDSG-GV-KNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS  163 (248)
Q Consensus        87 vkV~INGF-GRIGRlvlR~~~~~~~~~l~iVaIND~~-~~-e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~  163 (248)
                      +||+|.|- |++|+.++|++.++  +.++++++-+.. .. +....++.+ ..|+.+.+.+.            .. .+.
T Consensus         1 ~kVaIvGatG~~G~~L~~~l~~~--~~~~l~~v~~~~~~~g~~~~~~~~~-~~~~~~~~~~~------------~~-~~~   64 (341)
T TIGR00978         1 MRVAVLGATGLVGQKFVKLLAKH--PYFELAKVVASPRSAGKRYGEAVKW-IEPGDMPEYVR------------DL-PIV   64 (341)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhC--CCceEEEEEEChhhcCCcchhhccc-cccCCCccccc------------ee-EEE
Confidence            48999994 99999999988765  347888775431 11 111111111 00011111000            01 122


Q ss_pred             cCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC--CCCCCCeEEeecCCCCCCC-C-------CCe
Q 025797          164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA--KGADIPTYVVGVNEKDYDH-E-------VAN  233 (248)
Q Consensus       164 ~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs--k~~D~ptiV~GVN~~~y~~-~-------~~~  233 (248)
                      .-+|+  .|  .++|+|+.|++.-...+-...-+++|++-|.+|+--  + ++.|.++.++|++.|.. +       +.+
T Consensus        65 ~~~~~--~~--~~~DvVf~a~p~~~s~~~~~~~~~~G~~VIDlsg~fR~~-~~~~~~~p~vn~~~~~~~e~~~~~~~~~~  139 (341)
T TIGR00978        65 EPEPV--AS--KDVDIVFSALPSEVAEEVEPKLAEAGKPVFSNASNHRMD-PDVPLIIPEVNSDHLELLKVQKERGWKGF  139 (341)
T ss_pred             eCCHH--Hh--ccCCEEEEeCCHHHHHHHHHHHHHCCCEEEECChhhccC-CCCceeccccCHHHHhhHHhhhhhccCcc
Confidence            22333  34  479999999988766666555556788766666542  3 26789999999886742 1       135


Q ss_pred             EEeecC
Q 025797          234 IVRSWM  239 (248)
Q Consensus       234 IISnAS  239 (248)
                      ||+|.+
T Consensus       140 iVanPg  145 (341)
T TIGR00978       140 IVTNPN  145 (341)
T ss_pred             EEeCCC
Confidence            899987

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=96.84  E-value=0.0034  Score=59.48  Aligned_cols=90  Identities=20%  Similarity=0.269  Sum_probs=62.0

Q ss_pred             eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797           86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR  165 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~  165 (248)
                      ++||+|.|+|+|||.+++++...  +.+++|+|-|..+.+.+.-    +  .+                      ++...
T Consensus         3 kIRVgIVG~GnIGr~~a~al~~~--pd~ELVgV~dr~~~~~~~~----~--~~----------------------v~~~~   52 (324)
T TIGR01921         3 KIRAAIVGYGNLGRSVEKAIQQQ--PDMELVGVFSRRGAETLDT----E--TP----------------------VYAVA   52 (324)
T ss_pred             CcEEEEEeecHHHHHHHHHHHhC--CCcEEEEEEcCCcHHHHhh----c--CC----------------------ccccC
Confidence            58999999999999999987654  5699999988754333210    0  01                      11111


Q ss_pred             CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCC
Q 025797          166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP  209 (248)
Q Consensus       166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAP  209 (248)
                      |..+  + ...+|+|+-||+-..+.+.+..-|++|.. ||-|-|
T Consensus        53 d~~e--~-l~~iDVViIctPs~th~~~~~~~L~aG~N-VV~s~~   92 (324)
T TIGR01921        53 DDEK--H-LDDVDVLILCMGSATDIPEQAPYFAQFAN-TVDSFD   92 (324)
T ss_pred             CHHH--h-ccCCCEEEEcCCCccCHHHHHHHHHcCCC-EEECCC
Confidence            2111  1 14689999999999999999888988864 666655

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PRK06813 homoserine dehydrogenase; Validated

Probab=96.63  E-value=0.0053  Score=58.44  Aligned_cols=37  Identities=30%  Similarity=0.528  Sum_probs=29.1

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCC-------CCCeEEEEEeCC
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRK-------DSPLDVVVVNDS  121 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~-------~~~l~iVaIND~  121 (248)
                      |+++|+|-|||.+|+.+++.+.++.       +-+++|++|-+.
T Consensus         1 ~~i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~   44 (346)
T PRK06813          1 MKIKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGR   44 (346)
T ss_pred             CeeEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEec
Confidence            3589999999999999999876542       246788888654

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=96.44  E-value=0.0087  Score=54.21  Aligned_cols=34  Identities=21%  Similarity=0.294  Sum_probs=28.2

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS  121 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~  121 (248)
                      +||+|.|+|+||+.+++.+.... ..+++++|-|.
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~-~~~elv~v~d~   35 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGR-INAELYAFYDR   35 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCC-CCeEEEEEECC
Confidence            58999999999999999876531 25899998887

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=96.39  E-value=0.012  Score=53.73  Aligned_cols=36  Identities=28%  Similarity=0.413  Sum_probs=29.4

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS  121 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~  121 (248)
                      .++||||.|+|+||+.+++.+... ...+++++|-|+
T Consensus         5 ~~irIGIIG~G~IG~~~a~~L~~~-~~~~el~aV~dr   40 (271)
T PRK13302          5 PELRVAIAGLGAIGKAIAQALDRG-LPGLTLSAVAVR   40 (271)
T ss_pred             CeeEEEEECccHHHHHHHHHHHhc-CCCeEEEEEECC
Confidence            468999999999999999887642 246899988887

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=96.33  E-value=0.0064  Score=49.07  Aligned_cols=33  Identities=27%  Similarity=0.446  Sum_probs=29.2

Q ss_pred             eeEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797           87 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDS  121 (248)
Q Consensus        87 vkV~INGF-GRIGRlvlR~~~~~~~~~l~iVaIND~  121 (248)
                      |||+|+|+ ||+||.+++.+.+.  +.++++++-|.
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~--~~~~lv~~v~~   34 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILES--PGFELVGAVDR   34 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHS--TTEEEEEEEET
T ss_pred             CEEEEECCCCHHHHHHHHHHHhc--CCcEEEEEEec
Confidence            68999999 99999999998874  46999998776

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK06392 homoserine dehydrogenase; Provisional

Probab=96.06  E-value=0.0084  Score=56.56  Aligned_cols=35  Identities=37%  Similarity=0.685  Sum_probs=28.7

Q ss_pred             eeEEEeCCChhhHHHHHHHhhC-----CCCCeEEEEEeCC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGR-----KDSPLDVVVVNDS  121 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~-----~~~~l~iVaIND~  121 (248)
                      +||+|-|||-||+.++|.+.++     .+.++++|+|-|.
T Consensus         1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds   40 (326)
T PRK06392          1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDS   40 (326)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEEC
Confidence            4899999999999999988763     2346899999774

>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=95.86  E-value=0.017  Score=55.03  Aligned_cols=102  Identities=25%  Similarity=0.338  Sum_probs=58.7

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCC-------CCCeEEEEEeCCCChhhhhhhc-cccCcCcccCceEEEecCCcEEECC
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRK-------DSPLDVVVVNDSGGVKNASHLL-KYDSLLGTFKADVKIVDNETISVDG  156 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~-------~~~l~iVaIND~~~~e~~ayLL-kYDStHGkf~g~V~v~e~~~L~inG  156 (248)
                      +++||+|.|||-+|+-++|++.++.       +..+++++|-+... .    +. .+|   +. +..... ++..+.   
T Consensus         2 ~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~-~----~~~~~~---~~-~~~~~~-~~~~~~---   68 (333)
T COG0460           2 KTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDG-S----LVRDLD---LL-NAEVWT-TDGALS---   68 (333)
T ss_pred             ceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccc-h----hccccc---cc-chhhhe-eccccc---
Confidence            6799999999999999999987653       24578888866511 0    11 111   00 001110 111111   


Q ss_pred             eEEEEEecCCCCCCCCCCCcccEEecCccc-ccCchhhhHHHHc-CCCEEEEcCC
Q 025797          157 KLIKVVSNRDPLQLPWAELGIDIVIEGTGV-FVDGPGAGKHIQA-GAKKVIITAP  209 (248)
Q Consensus       157 k~I~v~~~~dP~~i~W~~~GidiVVE~TG~-F~~~e~a~~HL~~-GAKKVIISAP  209 (248)
                              .+ .++-+ +..+|+|||.+|. ..+.+.+...+++ ...|.|+||-
T Consensus        69 --------~~-~~~~~-~~~~dvvve~~~~d~~~~~~~~~~~~al~~GkhVVTaN  113 (333)
T COG0460          69 --------LG-DEVLL-DEDIDVVVELVGGDVEPAEPADLYLKALENGKHVVTAN  113 (333)
T ss_pred             --------cc-Hhhhc-cccCCEEEecCcccCCchhhHHHHHHHHHcCCeEECCC
Confidence                    11 12222 3467899999998 6555434444444 6778888864

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=95.78  E-value=0.019  Score=51.81  Aligned_cols=34  Identities=32%  Similarity=0.597  Sum_probs=28.6

Q ss_pred             eeeEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797           86 KLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDS  121 (248)
Q Consensus        86 ~vkV~INGF-GRIGRlvlR~~~~~~~~~l~iVaIND~  121 (248)
                      ++||+|.|+ ||||+.+++.+.+.  ++++++++-|.
T Consensus         1 ~mkV~IiG~~G~mG~~i~~~l~~~--~~~elvav~d~   35 (257)
T PRK00048          1 MIKVAVAGASGRMGRELIEAVEAA--EDLELVAAVDR   35 (257)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEec
Confidence            379999998 99999999987653  46899998886

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=95.59  E-value=0.036  Score=51.02  Aligned_cols=34  Identities=35%  Similarity=0.534  Sum_probs=28.6

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS  121 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~  121 (248)
                      ++|+|.|+|+||..+++..-+-. .+++++++-|.
T Consensus         1 l~vgiVGcGaIG~~l~e~v~~~~-~~~e~v~v~D~   34 (255)
T COG1712           1 LKVGIVGCGAIGKFLLELVRDGR-VDFELVAVYDR   34 (255)
T ss_pred             CeEEEEeccHHHHHHHHHHhcCC-cceeEEEEecC
Confidence            47999999999999999865422 56899999997

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=95.48  E-value=0.12  Score=46.37  Aligned_cols=34  Identities=44%  Similarity=0.634  Sum_probs=29.5

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS  121 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~  121 (248)
                      +.++|+|-|||.+|+.+++.+.+.   ..++|+|.|.
T Consensus        30 ~~~~v~I~G~G~VG~~~a~~L~~~---g~~vv~v~D~   63 (227)
T cd01076          30 AGARVAIQGFGNVGSHAARFLHEA---GAKVVAVSDS   63 (227)
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEECC
Confidence            457999999999999999988764   5899999886

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional

Probab=95.12  E-value=0.15  Score=48.56  Aligned_cols=120  Identities=18%  Similarity=0.320  Sum_probs=72.3

Q ss_pred             eeeEEEeCC-ChhhHHHHHHHhhCCCCCe-EEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEe
Q 025797           86 KLKVAINGF-GRIGRNFLRCWHGRKDSPL-DVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS  163 (248)
Q Consensus        86 ~vkV~INGF-GRIGRlvlR~~~~~~~~~l-~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~  163 (248)
                      .++|+| |- |-+||.+++++-+|.-+ + ++.             ||..         .... .+.++..+|+.+.|-.
T Consensus         3 ~~~iAi-GATg~VG~~~l~~Leer~fp-v~~l~-------------l~~s---------~~~s-~gk~i~f~g~~~~V~~   57 (322)
T PRK06901          3 TLNIAI-AAEFELSEKLLEALEQSDLE-IEQIS-------------IVEI---------EPFG-EEQGIRFNNKAVEQIA   57 (322)
T ss_pred             cceEEE-ecCcHHHHHHHHHHHhcCCc-hhhee-------------eccc---------cccc-CCCEEEECCEEEEEEE
Confidence            468999 87 99999999998876321 1 111             1111         0000 2345667788777753


Q ss_pred             cCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC---CCCCCCeEEeecCCCCCCC-CCCeEEeec
Q 025797          164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA---KGADIPTYVVGVNEKDYDH-EVANIVRSW  238 (248)
Q Consensus       164 ~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs---k~~D~ptiV~GVN~~~y~~-~~~~IISnA  238 (248)
                         .++-+|.  |+|+++= .|.=...+-+..-.++|+  ++|.--+   .+.|.|.+|-.||.+.+.. ....||+|-
T Consensus        58 ---l~~~~f~--~vDia~f-ag~~~s~~~ap~a~~aG~--~VIDnSsa~Rmd~dVPLVVPEVN~e~l~~~~~~~IIanP  128 (322)
T PRK06901         58 ---PEEVEWA--DFNYVFF-AGKMAQAEHLAQAAEAGC--IVIDLYGICAALANVPVVVPSVNDEQLAELRQRNIVSLP  128 (322)
T ss_pred             ---CCccCcc--cCCEEEE-cCHHHHHHHHHHHHHCCC--EEEECChHhhCCCCCCeecccCCHHHHhcCcCCCEEECC
Confidence               3445774  7998765 443333333322223455  6666543   3458999999999998865 114698874

>PRK06349 homoserine dehydrogenase; Provisional

Probab=94.94  E-value=0.062  Score=52.05  Aligned_cols=37  Identities=24%  Similarity=0.468  Sum_probs=29.3

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCC-------CCCeEEEEEeCC
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRK-------DSPLDVVVVNDS  121 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~-------~~~l~iVaIND~  121 (248)
                      +++||+|-|||.||+.+++.+.++.       +.++++++|-|.
T Consensus         2 ~~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~   45 (426)
T PRK06349          2 KPLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVR   45 (426)
T ss_pred             CeEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeC
Confidence            3689999999999999998875432       236889988775

>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]

Probab=94.74  E-value=0.15  Score=47.44  Aligned_cols=34  Identities=35%  Similarity=0.593  Sum_probs=28.3

Q ss_pred             eeeEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797           86 KLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDS  121 (248)
Q Consensus        86 ~vkV~INGF-GRIGRlvlR~~~~~~~~~l~iVaIND~  121 (248)
                      ++||+|+|+ ||+||.+.|+..+.  +.+++++.-+.
T Consensus         2 ~iki~V~Ga~GRMG~~ii~~v~~~--~~~~L~aa~~~   36 (266)
T COG0289           2 MIKVAVAGASGRMGRTLIRAVLEA--PDLELVAAFDR   36 (266)
T ss_pred             CceEEEEcCCChHHHHHHHHHhcC--CCceEEEEEec
Confidence            579999999 99999999998864  46788777664

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=94.53  E-value=0.36  Score=45.95  Aligned_cols=122  Identities=21%  Similarity=0.302  Sum_probs=75.8

Q ss_pred             ceeeEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEe
Q 025797           85 AKLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS  163 (248)
Q Consensus        85 ~~vkV~INGF-GRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~  163 (248)
                      +++||+|-|- |-.|+.++|++.++.-+.++++.+......             |+           .+...|+.+.+. 
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~sa-------------G~-----------~~~~~~~~~~v~-   57 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESA-------------GE-----------TLRFGGKSVTVQ-   57 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcC-------------Cc-----------eEEECCcceEEE-
Confidence            4579999997 999999999998754455677666322110             11           111223333332 


Q ss_pred             cCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC--CCCCCCeEEeecCC---CCCCCCCCeEEeec
Q 025797          164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA--KGADIPTYVVGVNE---KDYDHEVANIVRSW  238 (248)
Q Consensus       164 ~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs--k~~D~ptiV~GVN~---~~y~~~~~~IISnA  238 (248)
                        ++++++|.  ++|+|+=|++.=...+-+...+++|++=|=+|+.-  ++ |.|..|-.||.   +.+. + .+||+|.
T Consensus        58 --~~~~~~~~--~~Dvvf~a~p~~~s~~~~~~~~~~g~~VIDlS~~fRl~~-~vP~~lPEvn~~~l~~i~-~-~~iIAnP  130 (336)
T PRK08040         58 --DAAEFDWS--QAQLAFFVAGREASAAYAEEATNAGCLVIDSSGLFALEP-DVPLVVPEVNPFVLADYR-N-RNIIAVA  130 (336)
T ss_pred             --eCchhhcc--CCCEEEECCCHHHHHHHHHHHHHCCCEEEECChHhcCCC-CCceEccccCHHHHhhhc-c-CCEEECC
Confidence              46677885  68999988876555555555556676422233322  43 67989999999   5553 2 4688885

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=94.49  E-value=0.15  Score=48.07  Aligned_cols=124  Identities=23%  Similarity=0.254  Sum_probs=68.4

Q ss_pred             ceeeEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEEeCCCCh-hhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEE
Q 025797           85 AKLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDSGGV-KNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVV  162 (248)
Q Consensus        85 ~~vkV~INGF-GRIGRlvlR~~~~~~~~~l~iVaIND~~~~-e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~  162 (248)
                      |++||+|.|. |.+|+.++|.+.++  +.++++++-+.... +.++.      .|+.+.+.          .+    ..+
T Consensus         1 ~m~kVaIiGAtG~vG~~l~~~L~~~--p~~elv~v~~~~~~g~~l~~------~~~~~~~~----------~~----~~~   58 (343)
T PRK00436          1 MMIKVGIVGASGYTGGELLRLLLNH--PEVEIVAVTSRSSAGKPLSD------VHPHLRGL----------VD----LVL   58 (343)
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHcC--CCceEEEEECccccCcchHH------hCcccccc----------cC----cee
Confidence            3479999997 99999999998765  45788777653111 11111      12222110          00    011


Q ss_pred             ecCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC----CCCC------------------CCeEEe
Q 025797          163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA----KGAD------------------IPTYVV  220 (248)
Q Consensus       163 ~~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs----k~~D------------------~ptiV~  220 (248)
                      .+-++  ..|  .++|+|+-||+--...+-+..-+++|  ++||..-+    ++.|                  .|-.+-
T Consensus        59 ~~~~~--~~~--~~vD~Vf~alP~~~~~~~v~~a~~aG--~~VID~S~~fR~~~~~~~~~~y~~~~~~~~~~~~~~~~lp  132 (343)
T PRK00436         59 EPLDP--EIL--AGADVVFLALPHGVSMDLAPQLLEAG--VKVIDLSADFRLKDPEVYEKWYGFEHAAPELLKEAVYGLP  132 (343)
T ss_pred             ecCCH--HHh--cCCCEEEECCCcHHHHHHHHHHHhCC--CEEEECCcccCCCCchhhHHhcCCCCCCchhhcCceeecC
Confidence            11122  233  35899988988766666555555554  44554432    1112                  234444


Q ss_pred             ecCCCCCCCCCCeEEeec
Q 025797          221 GVNEKDYDHEVANIVRSW  238 (248)
Q Consensus       221 GVN~~~y~~~~~~IISnA  238 (248)
                      .+|.+.++.  .+||+|.
T Consensus       133 e~~~~~i~~--~~iIanP  148 (343)
T PRK00436        133 ELNREEIKG--ARLIANP  148 (343)
T ss_pred             ccCHHHhcC--CCEEECC
Confidence            567776653  3788885

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=94.24  E-value=0.074  Score=45.13  Aligned_cols=33  Identities=33%  Similarity=0.458  Sum_probs=26.7

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG  122 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~  122 (248)
                      .+|+|.|||+||+.++|.+...   .++|++.+-..
T Consensus        37 ~tvgIiG~G~IG~~vA~~l~~f---G~~V~~~d~~~   69 (178)
T PF02826_consen   37 KTVGIIGYGRIGRAVARRLKAF---GMRVIGYDRSP   69 (178)
T ss_dssp             SEEEEESTSHHHHHHHHHHHHT---T-EEEEEESSC
T ss_pred             CEEEEEEEcCCcCeEeeeeecC---CceeEEecccC
Confidence            5899999999999999987653   47988887653

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=94.12  E-value=0.33  Score=43.22  Aligned_cols=34  Identities=26%  Similarity=0.438  Sum_probs=29.4

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS  121 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~  121 (248)
                      +..+|+|-|||.+|+.+++.+.++   ...+|+|.|.
T Consensus        22 ~g~~vaIqGfGnVG~~~a~~L~~~---G~~vV~vsD~   55 (217)
T cd05211          22 EGLTVAVQGLGNVGWGLAKKLAEE---GGKVLAVSDP   55 (217)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc---CCEEEEEEcC
Confidence            447999999999999999998864   4789999986

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK11579 putative oxidoreductase; Provisional

Probab=93.97  E-value=0.2  Score=46.37  Aligned_cols=93  Identities=25%  Similarity=0.393  Sum_probs=58.4

Q ss_pred             eeeEEEeCCChhhHH-HHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797           86 KLKVAINGFGRIGRN-FLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN  164 (248)
Q Consensus        86 ~vkV~INGFGRIGRl-vlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~  164 (248)
                      ++||||.|+|+||+. .++++..  .+.+++++|.|+ +.+.+.-         .|.+ +               +++  
T Consensus         4 ~irvgiiG~G~i~~~~~~~~~~~--~~~~~l~av~d~-~~~~~~~---------~~~~-~---------------~~~--   53 (346)
T PRK11579          4 KIRVGLIGYGYASKTFHAPLIAG--TPGLELAAVSSS-DATKVKA---------DWPT-V---------------TVV--   53 (346)
T ss_pred             cceEEEECCCHHHHHHHHHHHhh--CCCCEEEEEECC-CHHHHHh---------hCCC-C---------------cee--
Confidence            589999999999984 4565443  246899999987 3333320         1111 0               111  


Q ss_pred             CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                      .|++++- .+-++|+|+-||--....+.+..=|++| |-|++=-|-
T Consensus        54 ~~~~ell-~~~~vD~V~I~tp~~~H~~~~~~al~aG-khVl~EKPl   97 (346)
T PRK11579         54 SEPQHLF-NDPNIDLIVIPTPNDTHFPLAKAALEAG-KHVVVDKPF   97 (346)
T ss_pred             CCHHHHh-cCCCCCEEEEcCCcHHHHHHHHHHHHCC-CeEEEeCCC
Confidence            1222221 1236899999999887777777777777 567766663

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=93.81  E-value=0.16  Score=39.09  Aligned_cols=95  Identities=27%  Similarity=0.364  Sum_probs=62.0

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD  166 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~d  166 (248)
                      +||+|.|+|++|+..++.+... .+.+++++|-|+. .+.....-+      +|... .. .+                 
T Consensus         1 i~v~iiG~G~~g~~~~~~~~~~-~~~~~v~~v~d~~-~~~~~~~~~------~~~~~-~~-~~-----------------   53 (120)
T PF01408_consen    1 IRVGIIGAGSIGRRHLRALLRS-SPDFEVVAVCDPD-PERAEAFAE------KYGIP-VY-TD-----------------   53 (120)
T ss_dssp             EEEEEESTSHHHHHHHHHHHHT-TTTEEEEEEECSS-HHHHHHHHH------HTTSE-EE-SS-----------------
T ss_pred             CEEEEECCcHHHHHHHHHHHhc-CCCcEEEEEEeCC-HHHHHHHHH------Hhccc-ch-hH-----------------
Confidence            5899999999999999888765 3578999999983 333222111      11111 11 11                 


Q ss_pred             CCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       167 P~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                      .+++- .+..+|+|+-||.-....+-+..=|++|. -|++--|.
T Consensus        54 ~~~ll-~~~~~D~V~I~tp~~~h~~~~~~~l~~g~-~v~~EKP~   95 (120)
T PF01408_consen   54 LEELL-ADEDVDAVIIATPPSSHAEIAKKALEAGK-HVLVEKPL   95 (120)
T ss_dssp             HHHHH-HHTTESEEEEESSGGGHHHHHHHHHHTTS-EEEEESSS
T ss_pred             HHHHH-HhhcCCEEEEecCCcchHHHHHHHHHcCC-EEEEEcCC
Confidence            11111 12268999999998877777777777776 78887774

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial

Probab=93.70  E-value=0.2  Score=48.42  Aligned_cols=125  Identities=18%  Similarity=0.155  Sum_probs=75.8

Q ss_pred             eEEEeCC-ChhhHHHHHHHh-hCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797           88 KVAINGF-GRIGRNFLRCWH-GRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR  165 (248)
Q Consensus        88 kV~INGF-GRIGRlvlR~~~-~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~  165 (248)
                      +|||-|- |-.|+-+++++. ++.-+-.+++..-..-             .           .+..+..+|+.+.|. +-
T Consensus         2 ~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~-------------s-----------~g~~~~f~~~~~~v~-~~   56 (366)
T TIGR01745         2 NVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQ-------------L-----------GQAAPSFGGTTGTLQ-DA   56 (366)
T ss_pred             eEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchh-------------h-----------CCCcCCCCCCcceEE-cC
Confidence            7999997 999999999877 4322212333332210             0           111223344444332 22


Q ss_pred             CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC---CCCCCCeEEeecCCCCCCCC-CCeE--EeecC
Q 025797          166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA---KGADIPTYVVGVNEKDYDHE-VANI--VRSWM  239 (248)
Q Consensus       166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs---k~~D~ptiV~GVN~~~y~~~-~~~I--ISnAS  239 (248)
                      +|. -.|  .++|+|+=|.|.-...+-+..-.++|...++|..-+   .+.|.|.+|-.||.+.+... +..|  |+|  
T Consensus        57 ~~~-~~~--~~vDivffa~g~~~s~~~~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~~i~~~~~~gi~~ian--  131 (366)
T TIGR01745        57 FDI-DAL--KALDIIITCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDVITDGLNNGIRTFVG--  131 (366)
T ss_pred             ccc-ccc--cCCCEEEEcCCHHHHHHHHHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHHHHHhHHhCCcCeEEC--
Confidence            222 145  379999999887766655555556787777887654   34589999999999987642 1346  454  


Q ss_pred             Ccc
Q 025797          240 KNW  242 (248)
Q Consensus       240 ~~~  242 (248)
                      -||
T Consensus       132 PNC  134 (366)
T TIGR01745       132 GNC  134 (366)
T ss_pred             cCH
Confidence            666

>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=93.31  E-value=0.084  Score=51.49  Aligned_cols=92  Identities=27%  Similarity=0.385  Sum_probs=53.2

Q ss_pred             ceeeEEEeCCChhhHHHH-HHHhhCCCCCeEEEEEeCC-CChhhhhhhccccCcCcccCceEEEecC----CcEEECCeE
Q 025797           85 AKLKVAINGFGRIGRNFL-RCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDN----ETISVDGKL  158 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvl-R~~~~~~~~~l~iVaIND~-~~~e~~ayLLkYDStHGkf~g~V~v~e~----~~L~inGk~  158 (248)
                      .|+|||+.|-|..|+-++ +++ .-  +.+++|+|.|. .+....|    ||-.++.=.-.+..++-    ..|. -| +
T Consensus        16 ~PiRVGlIGAG~mG~~ivtQi~-~m--~Gm~vvaisd~~~~~ak~A----~~~ag~~~~~~~e~~~~s~~a~Ai~-aG-K   86 (438)
T COG4091          16 KPIRVGLIGAGEMGTGIVTQIA-SM--PGMEVVAISDRNLDAAKRA----YDRAGGPKIEAVEADDASKMADAIE-AG-K   86 (438)
T ss_pred             CceEEEEecccccchHHHHHHh-hc--CCceEEEEecccchHHHHH----HHHhcCCcccccccchhhHHHHHHh-cC-c
Confidence            689999999999999665 444 22  46999999997 3444444    45555543222222100    1111 12 2


Q ss_pred             EEEEecCCCCCCCCCCCcccEEecCccccc
Q 025797          159 IKVVSNRDPLQLPWAELGIDIVIEGTGVFV  188 (248)
Q Consensus       159 I~v~~~~dP~~i~W~~~GidiVVE~TG~F~  188 (248)
                      |.++.  |- ++-...-.||+|||.||+-.
T Consensus        87 i~vT~--D~-~~i~~~~~IdvIIdATG~p~  113 (438)
T COG4091          87 IAVTD--DA-ELIIANDLIDVIIDATGVPE  113 (438)
T ss_pred             EEEec--ch-hhhhcCCcceEEEEcCCCcc
Confidence            33332  22 22233457999999999854

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=92.86  E-value=0.53  Score=44.66  Aligned_cols=124  Identities=21%  Similarity=0.270  Sum_probs=73.1

Q ss_pred             eeeEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797           86 KLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN  164 (248)
Q Consensus        86 ~vkV~INGF-GRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~  164 (248)
                      ++||+|-|- |-+|+.++|++.++.-+.++++.+-.....             |+.   +.        ..|+...+ ..
T Consensus         4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~a-------------G~~---l~--------~~~~~l~~-~~   58 (336)
T PRK05671          4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESA-------------GHS---VP--------FAGKNLRV-RE   58 (336)
T ss_pred             CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccC-------------CCe---ec--------cCCcceEE-ee
Confidence            379999996 999999999998654455676666443111             210   11        11211112 22


Q ss_pred             CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCC-CCCeEEeec
Q 025797          165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDH-EVANIVRSW  238 (248)
Q Consensus       165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~-~~~~IISnA  238 (248)
                      .++  .+|  .++|+|+=|++--...+-+..-+++|++-|=+|+.-.-.|.|-+|-.||.+.++. .+.+||+|.
T Consensus        59 ~~~--~~~--~~vD~vFla~p~~~s~~~v~~~~~~G~~VIDlS~~fR~~~~pl~lPEvn~~~i~~~~~~~iIAnP  129 (336)
T PRK05671         59 VDS--FDF--SQVQLAFFAAGAAVSRSFAEKARAAGCSVIDLSGALPSAQAPNVVPEVNAERLASLAAPFLVSSP  129 (336)
T ss_pred             CCh--HHh--cCCCEEEEcCCHHHHHHHHHHHHHCCCeEEECchhhcCCCCCEEecccCHHHHccccCCCEEECC
Confidence            222  236  3799999998854343433333456764333455432236799999999988765 114688875

>PLN02477 glutamate dehydrogenase

Probab=92.15  E-value=0.95  Score=44.32  Aligned_cols=33  Identities=27%  Similarity=0.401  Sum_probs=28.6

Q ss_pred             eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797           86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS  121 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~  121 (248)
                      ..+|+|-|||-+|+.+++.+.++   ..+||+|.|.
T Consensus       206 g~~VaIqGfGnVG~~~A~~L~e~---GakVVaVsD~  238 (410)
T PLN02477        206 GQTFVIQGFGNVGSWAAQLIHEK---GGKIVAVSDI  238 (410)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHc---CCEEEEEECC
Confidence            36899999999999999998764   4799999885

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=91.83  E-value=0.21  Score=46.47  Aligned_cols=32  Identities=25%  Similarity=0.276  Sum_probs=25.7

Q ss_pred             eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797           86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND  120 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND  120 (248)
                      -.+|||.|||+|||.++|.+...   .++|++.+-
T Consensus       145 gktvGIiG~G~IG~~vA~~~~~f---gm~V~~~d~  176 (311)
T PRK08410        145 GKKWGIIGLGTIGKRVAKIAQAF---GAKVVYYST  176 (311)
T ss_pred             CCEEEEECCCHHHHHHHHHHhhc---CCEEEEECC
Confidence            35899999999999999987542   468888764

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=91.67  E-value=0.83  Score=42.84  Aligned_cols=100  Identities=22%  Similarity=0.163  Sum_probs=56.6

Q ss_pred             eEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCCC
Q 025797           88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDP  167 (248)
Q Consensus        88 kV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~dP  167 (248)
                      +|+|.|-|.||.+.+.++-..  .--+|+++ |. +.+.++.--++.      ..++....       ...      ..+
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~--Ga~~Viv~-d~-~~~Rl~~A~~~~------g~~~~~~~-------~~~------~~~  227 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLL--GASVVIVV-DR-SPERLELAKEAG------GADVVVNP-------SED------DAG  227 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHc--CCceEEEe-CC-CHHHHHHHHHhC------CCeEeecC-------ccc------cHH
Confidence            799999999998875554322  22466666 54 334444333322      11222110       000      000


Q ss_pred             C---CCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCC
Q 025797          168 L---QLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAK  211 (248)
Q Consensus       168 ~---~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk  211 (248)
                      .   ++.. ..|+|+||||||.....+.+-..++.|-.=|++..++.
T Consensus       228 ~~~~~~t~-g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~~~  273 (350)
T COG1063         228 AEILELTG-GRGADVVIEAVGSPPALDQALEALRPGGTVVVVGVYGG  273 (350)
T ss_pred             HHHHHHhC-CCCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEeccCC
Confidence            0   1111 15899999999966555666666666777777777764

>PRK06487 glycerate dehydrogenase; Provisional

Probab=91.49  E-value=0.26  Score=45.97  Aligned_cols=32  Identities=16%  Similarity=0.219  Sum_probs=25.8

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS  121 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~  121 (248)
                      .+|||.|||+|||.++|.+...   .++|++.+..
T Consensus       149 ktvgIiG~G~IG~~vA~~l~~f---gm~V~~~~~~  180 (317)
T PRK06487        149 KTLGLLGHGELGGAVARLAEAF---GMRVLIGQLP  180 (317)
T ss_pred             CEEEEECCCHHHHHHHHHHhhC---CCEEEEECCC
Confidence            5899999999999999987532   4688887643

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=91.39  E-value=0.41  Score=35.72  Aligned_cols=42  Identities=26%  Similarity=0.440  Sum_probs=29.8

Q ss_pred             eEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhh
Q 025797           88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHL  130 (248)
Q Consensus        88 kV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayL  130 (248)
                      ||+|.|+|++|..++|.+++..-.+-++..+++. +.+.+.++
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r-~~~~~~~~   42 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSR-SPEKAAEL   42 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES-SHHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccC-cHHHHHHH
Confidence            7999999999999999988753233577766554 44555544

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=90.84  E-value=0.78  Score=44.41  Aligned_cols=121  Identities=22%  Similarity=0.169  Sum_probs=73.8

Q ss_pred             eeEEEeCC-ChhhHHHHHHHhhCCCCCeE---EEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEE
Q 025797           87 LKVAINGF-GRIGRNFLRCWHGRKDSPLD---VVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVV  162 (248)
Q Consensus        87 vkV~INGF-GRIGRlvlR~~~~~~~~~l~---iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~  162 (248)
                      ++|+|-|- |-.|+-++|.+++..  .+.   ++..-..    ..          |          +..+..+|+...++
T Consensus         2 ~~VAIVGATG~vG~ell~llL~~~--~f~~~~l~~~ss~----~s----------g----------~~~~~f~g~~~~v~   55 (369)
T PRK06598          2 KKVGFVGWRGMVGSVLMQRMVEEN--DFDLIEPVFFSTS----QA----------G----------GAAPSFGGKEGTLQ   55 (369)
T ss_pred             eEEEEEeCCCHHHHHHHHHHHhCC--CCCcCcEEEecch----hh----------C----------CcccccCCCcceEE
Confidence            68999997 999999998555443  333   3332111    00          0          01112344444454


Q ss_pred             ecCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC---CCCCCCeEEeecCCCCCCCC--CC-eEEe
Q 025797          163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA---KGADIPTYVVGVNEKDYDHE--VA-NIVR  236 (248)
Q Consensus       163 ~~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs---k~~D~ptiV~GVN~~~y~~~--~~-~IIS  236 (248)
                      ...++..  |  .++|+|+=|+|.=...+-+....++|++.+||.--+   -+.|.|.+|-.||.+.+...  +. ++|+
T Consensus        56 ~~~~~~~--~--~~~Divf~a~~~~~s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~~~~~g~~iIa  131 (369)
T PRK06598         56 DAFDIDA--L--KKLDIIITCQGGDYTNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDDALANGVKTFV  131 (369)
T ss_pred             ecCChhH--h--cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHhhhhcCCCEEE
Confidence            4444443  4  369999999887666555555557788767776544   23478999999999887531  11 4677


Q ss_pred             e
Q 025797          237 S  237 (248)
Q Consensus       237 n  237 (248)
                      |
T Consensus       132 n  132 (369)
T PRK06598        132 G  132 (369)
T ss_pred             c
Confidence            5

>PRK06932 glycerate dehydrogenase; Provisional

Probab=90.67  E-value=0.32  Score=45.40  Aligned_cols=31  Identities=16%  Similarity=0.218  Sum_probs=24.7

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND  120 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND  120 (248)
                      .+|||.|||+|||.++|.+...   .++|++.+-
T Consensus       148 ktvgIiG~G~IG~~va~~l~~f---g~~V~~~~~  178 (314)
T PRK06932        148 STLGVFGKGCLGTEVGRLAQAL---GMKVLYAEH  178 (314)
T ss_pred             CEEEEECCCHHHHHHHHHHhcC---CCEEEEECC
Confidence            5899999999999999987532   468777753

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=89.92  E-value=2  Score=41.23  Aligned_cols=120  Identities=20%  Similarity=0.355  Sum_probs=71.5

Q ss_pred             ceeeEEEeCC-ChhhHHHHHHHhhCCCCCeE---EEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEE
Q 025797           85 AKLKVAINGF-GRIGRNFLRCWHGRKDSPLD---VVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIK  160 (248)
Q Consensus        85 ~~vkV~INGF-GRIGRlvlR~~~~~~~~~l~---iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~  160 (248)
                      ..+||+|-|- |-.|+-++|++.+++  .++   +..+-..   +.          -|           ..+...|+.+.
T Consensus         4 ~~~~VaIvGATG~vG~ell~lL~~h~--~f~v~~l~~~aS~---~s----------aG-----------k~~~~~~~~l~   57 (347)
T PRK06728          4 KGYHVAVVGATGAVGQKIIELLEKET--KFNIAEVTLLSSK---RS----------AG-----------KTVQFKGREII   57 (347)
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHHCC--CCCcccEEEEECc---cc----------CC-----------CCeeeCCcceE
Confidence            3479999997 999999999987543  343   3222111   00          01           12223344333


Q ss_pred             EEecCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC---CCCCCCeEEeecCCCCCCCCCCeEEee
Q 025797          161 VVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA---KGADIPTYVVGVNEKDYDHEVANIVRS  237 (248)
Q Consensus       161 v~~~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs---k~~D~ptiV~GVN~~~y~~~~~~IISn  237 (248)
                      + ++-+|..  |  .++|+|+=|+|.=...+-+....++|+  +||.--+   -+.|.|.+|-.||.+.+... ..||+|
T Consensus        58 v-~~~~~~~--~--~~~Divf~a~~~~~s~~~~~~~~~~G~--~VID~Ss~fR~~~~vplvvPEvN~e~i~~~-~~iIan  129 (347)
T PRK06728         58 I-QEAKINS--F--EGVDIAFFSAGGEVSRQFVNQAVSSGA--IVIDNTSEYRMAHDVPLVVPEVNAHTLKEH-KGIIAV  129 (347)
T ss_pred             E-EeCCHHH--h--cCCCEEEECCChHHHHHHHHHHHHCCC--EEEECchhhcCCCCCCeEeCCcCHHHHhcc-CCEEEC
Confidence            3 3335543  5  368999988876555555444456664  4443322   22367999999999988753 468887


Q ss_pred             c
Q 025797          238 W  238 (248)
Q Consensus       238 A  238 (248)
                      .
T Consensus       130 P  130 (347)
T PRK06728        130 P  130 (347)
T ss_pred             C
Confidence            4

>PRK08374 homoserine dehydrogenase; Provisional

Probab=89.82  E-value=0.55  Score=44.31  Aligned_cols=37  Identities=32%  Similarity=0.577  Sum_probs=29.8

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCC-------CCCeEEEEEeCC
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRK-------DSPLDVVVVNDS  121 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~-------~~~l~iVaIND~  121 (248)
                      |+++|+|-|||-+|+.++|.+.++.       +-++++++|-|.
T Consensus         1 ~~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds   44 (336)
T PRK08374          1 MEVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDT   44 (336)
T ss_pred             CeeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeC
Confidence            5689999999999999999876531       235899999874

>PLN02928 oxidoreductase family protein

Probab=89.78  E-value=0.42  Score=45.27  Aligned_cols=32  Identities=22%  Similarity=0.313  Sum_probs=26.1

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS  121 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~  121 (248)
                      .+|+|.|||+||+.++|.+...   .++|++.+-.
T Consensus       160 ktvGIiG~G~IG~~vA~~l~af---G~~V~~~dr~  191 (347)
T PLN02928        160 KTVFILGYGAIGIELAKRLRPF---GVKLLATRRS  191 (347)
T ss_pred             CEEEEECCCHHHHHHHHHHhhC---CCEEEEECCC
Confidence            5899999999999999987643   4688887653

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=89.67  E-value=1.4  Score=41.71  Aligned_cols=123  Identities=24%  Similarity=0.275  Sum_probs=66.9

Q ss_pred             eeEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEEeCC-CCh-hhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEe
Q 025797           87 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDS-GGV-KNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS  163 (248)
Q Consensus        87 vkV~INGF-GRIGRlvlR~~~~~~~~~l~iVaIND~-~~~-e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~  163 (248)
                      +||+|-|- |.+|+.++|.+.++  +.++++++-++ ... +.+.      ..|+.+.+...             . .+.
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~h--P~~el~~l~~s~~sagk~~~------~~~~~l~~~~~-------------~-~~~   58 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNH--PEVEITYLVSSRESAGKPVS------EVHPHLRGLVD-------------L-NLE   58 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcC--CCceEEEEeccchhcCCChH------HhCccccccCC-------------c-eee
Confidence            48999998 99999999998865  46787766332 111 1111      11222211000             0 111


Q ss_pred             cCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEE-EcCCCCCCCCC------------------eEEee---
Q 025797          164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI-ITAPAKGADIP------------------TYVVG---  221 (248)
Q Consensus       164 ~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVI-ISAPsk~~D~p------------------tiV~G---  221 (248)
                      .-++++  |.+ ++|+|+=|++--...+-+..-+++| ++|| +|+.-.- +.|                  .++||   
T Consensus        59 ~~~~~~--~~~-~~DvVf~alP~~~s~~~~~~~~~~G-~~VIDlS~~fR~-~~~~~y~~~y~~~~~~~~~~~~~~y~lPE  133 (346)
T TIGR01850        59 PIDEEE--IAE-DADVVFLALPHGVSAELAPELLAAG-VKVIDLSADFRL-KDPEVYEKWYGFEHAGPELLQEAVYGLPE  133 (346)
T ss_pred             cCCHHH--hhc-CCCEEEECCCchHHHHHHHHHHhCC-CEEEeCChhhhc-CChhhhHHhcCCCCCChhhhcCceEECCc
Confidence            223332  322 6899999998776666666555666 3443 3443211 111                  25555   


Q ss_pred             cCCCCCCCCCCeEEeec
Q 025797          222 VNEKDYDHEVANIVRSW  238 (248)
Q Consensus       222 VN~~~y~~~~~~IISnA  238 (248)
                      +|.+++..  .+||+|-
T Consensus       134 ~n~~~i~~--~~iianP  148 (346)
T TIGR01850       134 LHREEIKG--ARLIANP  148 (346)
T ss_pred             cCHHHhCC--CcEEEcC
Confidence            56666654  3688885

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=89.65  E-value=0.59  Score=43.04  Aligned_cols=51  Identities=20%  Similarity=0.141  Sum_probs=39.1

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC---------CChhhhhhhccccCcCc
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS---------GGVKNASHLLKYDSLLG  138 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~---------~~~e~~ayLLkYDStHG  138 (248)
                      +..+|+|-|||-+|+.+++.+.+.   ..++|+|.|.         .|++.+..|++++..++
T Consensus        37 ~g~~vaIqGfGnVG~~~a~~L~e~---GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~   96 (254)
T cd05313          37 KGKRVAISGSGNVAQYAAEKLLEL---GAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRR   96 (254)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcC
Confidence            346899999999999999998864   4799999883         35666766676665444

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=89.32  E-value=1.1  Score=40.40  Aligned_cols=103  Identities=21%  Similarity=0.322  Sum_probs=68.3

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN  164 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~  164 (248)
                      ...+|.|.|.|.+||.++-.-+.. ..+++|+++=|. +.+.+          |++-++|.+.+-+.|            
T Consensus        83 ~~tnviiVG~GnlG~All~Y~f~~-~~~~~iv~~FDv-~~~~V----------G~~~~~v~V~~~d~l------------  138 (211)
T COG2344          83 KTTNVIIVGVGNLGRALLNYNFSK-KNGMKIVAAFDV-DPDKV----------GTKIGDVPVYDLDDL------------  138 (211)
T ss_pred             cceeEEEEccChHHHHHhcCcchh-hcCceEEEEecC-CHHHh----------CcccCCeeeechHHH------------
Confidence            346899999999999887665543 357999999887 33322          776666665321111            


Q ss_pred             CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCC
Q 025797          165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIP  216 (248)
Q Consensus       165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~p  216 (248)
                         ++. -.+.++|++|=|.-.=...+-+..-.++|+|-++=-||..= +.|
T Consensus       139 ---e~~-v~~~dv~iaiLtVPa~~AQ~vad~Lv~aGVkGIlNFtPv~l-~~p  185 (211)
T COG2344         139 ---EKF-VKKNDVEIAILTVPAEHAQEVADRLVKAGVKGILNFTPVRL-QVP  185 (211)
T ss_pred             ---HHH-HHhcCccEEEEEccHHHHHHHHHHHHHcCCceEEeccceEe-cCC
Confidence               100 12347888887766655556666777899999998899752 455

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=89.21  E-value=0.67  Score=40.46  Aligned_cols=97  Identities=23%  Similarity=0.248  Sum_probs=57.9

Q ss_pred             eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797           86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR  165 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~  165 (248)
                      ..+|+|.|.|.+|+.+++.... ....++++++-|. +.+..          |+.             ++|.++  ..-.
T Consensus        84 ~~rV~IIGaG~iG~~l~~~~~~-~~~g~~ivgv~D~-d~~~~----------~~~-------------i~g~~v--~~~~  136 (213)
T PRK05472         84 TWNVALVGAGNLGRALLNYNGF-EKRGFKIVAAFDV-DPEKI----------GTK-------------IGGIPV--YHID  136 (213)
T ss_pred             CcEEEEECCCHHHHHHHHhhhc-ccCCcEEEEEEEC-Chhhc----------CCE-------------eCCeEE--cCHH
Confidence            3689999999999999886322 2346899988765 22221          110             122222  1111


Q ss_pred             CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                      +..++ ..+.++|+|+-|+......+-...-+++|.+-|+.-.|-
T Consensus       137 ~l~~l-i~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~  180 (213)
T PRK05472        137 ELEEV-VKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPV  180 (213)
T ss_pred             HHHHH-HHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCce
Confidence            22222 134679999999886554444444455788877776775

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=89.13  E-value=0.5  Score=45.77  Aligned_cols=30  Identities=20%  Similarity=0.311  Sum_probs=24.0

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN  119 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN  119 (248)
                      .+|||.|||+||+.++|.+...   .++|++.+
T Consensus       152 ktvGIiG~G~IG~~vA~~~~~f---Gm~V~~~d  181 (409)
T PRK11790        152 KTLGIVGYGHIGTQLSVLAESL---GMRVYFYD  181 (409)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC---CCEEEEEC
Confidence            5899999999999999987643   35776665

>PRK06436 glycerate dehydrogenase; Provisional

Probab=89.08  E-value=0.52  Score=43.99  Aligned_cols=32  Identities=19%  Similarity=0.305  Sum_probs=25.6

Q ss_pred             eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797           86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND  120 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND  120 (248)
                      -.+|||.|||+||+.++|.+...   .+++++.+.
T Consensus       122 gktvgIiG~G~IG~~vA~~l~af---G~~V~~~~r  153 (303)
T PRK06436        122 NKSLGILGYGGIGRRVALLAKAF---GMNIYAYTR  153 (303)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHC---CCEEEEECC
Confidence            36899999999999999976532   468888875

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=88.85  E-value=0.53  Score=44.19  Aligned_cols=31  Identities=26%  Similarity=0.423  Sum_probs=23.6

Q ss_pred             eeeEEEeCCChhhHHHHHHHh-hCCCCCeEEEEEe
Q 025797           86 KLKVAINGFGRIGRNFLRCWH-GRKDSPLDVVVVN  119 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~-~~~~~~l~iVaIN  119 (248)
                      -.+|||.|||+|||.++|.+. ..   .++|++.+
T Consensus       145 gktvGIiG~G~IG~~va~~l~~~f---gm~V~~~~  176 (323)
T PRK15409        145 HKTLGIVGMGRIGMALAQRAHFGF---NMPILYNA  176 (323)
T ss_pred             CCEEEEEcccHHHHHHHHHHHhcC---CCEEEEEC
Confidence            368999999999999998764 32   46776543

>PRK07574 formate dehydrogenase; Provisional

Probab=88.67  E-value=0.55  Score=45.48  Aligned_cols=31  Identities=29%  Similarity=0.390  Sum_probs=25.2

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND  120 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND  120 (248)
                      .+|+|.|||+||+.++|.+...   .++|.+.+.
T Consensus       193 ktVGIvG~G~IG~~vA~~l~~f---G~~V~~~dr  223 (385)
T PRK07574        193 MTVGIVGAGRIGLAVLRRLKPF---DVKLHYTDR  223 (385)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC---CCEEEEECC
Confidence            5799999999999999987642   468877764

>PRK13243 glyoxylate reductase; Reviewed

Probab=88.40  E-value=0.61  Score=43.84  Aligned_cols=32  Identities=28%  Similarity=0.463  Sum_probs=25.3

Q ss_pred             eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797           86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND  120 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND  120 (248)
                      -.+|+|.|||+||+.++|.+...   .++|++.+-
T Consensus       150 gktvgIiG~G~IG~~vA~~l~~~---G~~V~~~d~  181 (333)
T PRK13243        150 GKTIGIIGFGRIGQAVARRAKGF---GMRILYYSR  181 (333)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHC---CCEEEEECC
Confidence            36899999999999999987643   367776653

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=88.31  E-value=0.62  Score=44.03  Aligned_cols=31  Identities=29%  Similarity=0.430  Sum_probs=24.5

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND  120 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND  120 (248)
                      ..|||.|||+||+.+++.+...   .+++++.+-
T Consensus       143 kTvGIiG~G~IG~~va~~l~af---gm~v~~~d~  173 (324)
T COG0111         143 KTVGIIGLGRIGRAVAKRLKAF---GMKVIGYDP  173 (324)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC---CCeEEEECC
Confidence            5899999999999999766532   478777654

>PRK10206 putative oxidoreductase; Provisional

Probab=88.00  E-value=1.3  Score=41.54  Aligned_cols=96  Identities=19%  Similarity=0.233  Sum_probs=55.2

Q ss_pred             eeeEEEeCCChhhH-HHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797           86 KLKVAINGFGRIGR-NFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN  164 (248)
Q Consensus        86 ~vkV~INGFGRIGR-lvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~  164 (248)
                      ++||||.|+|+|++ ..++.+... .+.+++++|-|+. .+.....=+|.       + +.+               +  
T Consensus         1 ~irvgiiG~G~~~~~~h~~~~~~~-~~~~~l~av~d~~-~~~~~~~~~~~-------~-~~~---------------~--   53 (344)
T PRK10206          1 VINCAFIGFGKSTTRYHLPYVLNR-KDSWHVAHIFRRH-AKPEEQAPIYS-------H-IHF---------------T--   53 (344)
T ss_pred             CeEEEEECCCHHHhheehhhHhcC-CCCEEEEEEEcCC-hhHHHHHHhcC-------C-Ccc---------------c--
Confidence            37999999999985 345654332 2468999999983 22221111221       0 111               0  


Q ss_pred             CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                      .|.+++ ..+.++|+|+-||-.....+-+..=|++| |-|++=-|-
T Consensus        54 ~~~~el-l~~~~iD~V~I~tp~~~H~~~~~~al~aG-khVl~EKPl   97 (344)
T PRK10206         54 SDLDEV-LNDPDVKLVVVCTHADSHFEYAKRALEAG-KNVLVEKPF   97 (344)
T ss_pred             CCHHHH-hcCCCCCEEEEeCCchHHHHHHHHHHHcC-CcEEEecCC
Confidence            111111 11235788888888777777777777777 567766563

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=87.64  E-value=1.9  Score=41.42  Aligned_cols=124  Identities=27%  Similarity=0.332  Sum_probs=73.2

Q ss_pred             eeEEEeC-CChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797           87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR  165 (248)
Q Consensus        87 vkV~ING-FGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~  165 (248)
                      ++|||-| -|-.|+-++..+-++ ...++.+.+=-.            .+-.|+          ..+...|+.+.+- +.
T Consensus         2 ~~VavvGATG~VG~~~~~~L~e~-~f~~~~~~~~AS------------~rSaG~----------~~~~f~~~~~~v~-~~   57 (334)
T COG0136           2 LNVAVLGATGAVGQVLLELLEER-HFPFEELVLLAS------------ARSAGK----------KYIEFGGKSIGVP-ED   57 (334)
T ss_pred             cEEEEEeccchHHHHHHHHHHhc-CCCcceEEEEec------------ccccCC----------ccccccCccccCc-cc
Confidence            6899996 599999999888775 334443322111            111111          1122333332221 11


Q ss_pred             CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC---CCCCCCeEEeecCCCCCCCCC-Ce-EEeec
Q 025797          166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA---KGADIPTYVVGVNEKDYDHEV-AN-IVRSW  238 (248)
Q Consensus       166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs---k~~D~ptiV~GVN~~~y~~~~-~~-IISnA  238 (248)
                      -.+...|.  ++|||+=|-|.=.+.+-...--++|  .++|+.-+   .+.|.|-+|-.||.+.+...+ .. ||+|.
T Consensus        58 ~~~~~~~~--~~Divf~~ag~~~s~~~~p~~~~~G--~~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~rg~Iianp  131 (334)
T COG0136          58 AADEFVFS--DVDIVFFAAGGSVSKEVEPKAAEAG--CVVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQKRGFIIANP  131 (334)
T ss_pred             cccccccc--cCCEEEEeCchHHHHHHHHHHHHcC--CEEEeCCcccccCCCCCEecCCcCHHHHHhhhhCCCEEECC
Confidence            13445666  7999999987655555444444567  68898765   345899999999988765431 13 88774

>PLN02306 hydroxypyruvate reductase

Probab=87.37  E-value=0.75  Score=44.47  Aligned_cols=31  Identities=26%  Similarity=0.486  Sum_probs=23.8

Q ss_pred             eeeEEEeCCChhhHHHHHHHh-hCCCCCeEEEEEe
Q 025797           86 KLKVAINGFGRIGRNFLRCWH-GRKDSPLDVVVVN  119 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~-~~~~~~l~iVaIN  119 (248)
                      -.+|||.|||+||+.++|.+. .   -.++|++.+
T Consensus       165 gktvGIiG~G~IG~~vA~~l~~~---fGm~V~~~d  196 (386)
T PLN02306        165 GQTVGVIGAGRIGSAYARMMVEG---FKMNLIYYD  196 (386)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhc---CCCEEEEEC
Confidence            358999999999999998753 2   146777664

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=87.08  E-value=0.49  Score=44.78  Aligned_cols=31  Identities=29%  Similarity=0.484  Sum_probs=24.2

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND  120 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND  120 (248)
                      .+|||.|+||||+.++|.+..   -.++|+.-+-
T Consensus       147 ktvGIiG~GrIG~avA~r~~~---Fgm~v~y~~~  177 (324)
T COG1052         147 KTLGIIGLGRIGQAVARRLKG---FGMKVLYYDR  177 (324)
T ss_pred             CEEEEECCCHHHHHHHHHHhc---CCCEEEEECC
Confidence            589999999999999998753   2467665553

>PLN02775 Probable dihydrodipicolinate reductase

Probab=86.65  E-value=2.3  Score=39.99  Aligned_cols=34  Identities=21%  Similarity=0.397  Sum_probs=29.0

Q ss_pred             ceeeEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797           85 AKLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDS  121 (248)
Q Consensus        85 ~~vkV~INGF-GRIGRlvlR~~~~~~~~~l~iVaIND~  121 (248)
                      +++||.|||. ||+|+.+.++...   .++++|+.-|+
T Consensus        10 ~~i~V~V~Ga~G~MG~~~~~av~~---~~~~Lv~~~~~   44 (286)
T PLN02775         10 SAIPIMVNGCTGKMGHAVAEAAVS---AGLQLVPVSFT   44 (286)
T ss_pred             CCCeEEEECCCChHHHHHHHHHhc---CCCEEEEEecc
Confidence            5689999997 9999999998775   46999998775

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=86.49  E-value=0.98  Score=42.25  Aligned_cols=31  Identities=13%  Similarity=0.232  Sum_probs=25.1

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND  120 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND  120 (248)
                      .+|+|.|||.||+.++|.+...   .+++.+.+.
T Consensus       137 ~tvgIvG~G~IG~~vA~~l~af---G~~V~~~~~  167 (312)
T PRK15469        137 FTIGILGAGVLGSKVAQSLQTW---GFPLRCWSR  167 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC---CCEEEEEeC
Confidence            5899999999999999987642   467777764

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=86.38  E-value=2.6  Score=38.11  Aligned_cols=87  Identities=14%  Similarity=0.084  Sum_probs=48.6

Q ss_pred             eEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCCC
Q 025797           88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDP  167 (248)
Q Consensus        88 kV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~dP  167 (248)
                      +|.|.|.|-||.+.+.++..+   ..+.|++-|. +.+.+....++    +    .          +|-        .+.
T Consensus       147 ~vlV~G~G~vG~~a~q~ak~~---G~~~v~~~~~-~~~rl~~a~~~----~----~----------i~~--------~~~  196 (308)
T TIGR01202       147 PDLIVGHGTLGRLLARLTKAA---GGSPPAVWET-NPRRRDGATGY----E----V----------LDP--------EKD  196 (308)
T ss_pred             cEEEECCCHHHHHHHHHHHHc---CCceEEEeCC-CHHHHHhhhhc----c----c----------cCh--------hhc
Confidence            689999999999988877543   2443333343 22232211111    0    0          110        000


Q ss_pred             CCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCC
Q 025797          168 LQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP  209 (248)
Q Consensus       168 ~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAP  209 (248)
                           ...|+|+|+||+|.-...+.+-..++.|.+=|++..+
T Consensus       197 -----~~~g~Dvvid~~G~~~~~~~~~~~l~~~G~iv~~G~~  233 (308)
T TIGR01202       197 -----PRRDYRAIYDASGDPSLIDTLVRRLAKGGEIVLAGFY  233 (308)
T ss_pred             -----cCCCCCEEEECCCCHHHHHHHHHhhhcCcEEEEEeec
Confidence                 1247899999999754445555566666665655544

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=86.23  E-value=3.1  Score=39.57  Aligned_cols=126  Identities=19%  Similarity=0.237  Sum_probs=69.5

Q ss_pred             ceeeEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEe
Q 025797           85 AKLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS  163 (248)
Q Consensus        85 ~~vkV~INGF-GRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~  163 (248)
                      .++||+|.|- |.+|+.++|++.++.-+.++++.+-..-..             |+   .+.        .+|+... +.
T Consensus         6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsa-------------Gk---~~~--------~~~~~~~-v~   60 (344)
T PLN02383          6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSA-------------GK---KVT--------FEGRDYT-VE   60 (344)
T ss_pred             CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCC-------------CC---eee--------ecCceeE-EE
Confidence            5679999985 999999999988753344566555211111             11   111        1222222 22


Q ss_pred             cCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC-CCCCCCeEEeecCCCCCCCCC-----CeEEee
Q 025797          164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA-KGADIPTYVVGVNEKDYDHEV-----ANIVRS  237 (248)
Q Consensus       164 ~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs-k~~D~ptiV~GVN~~~y~~~~-----~~IISn  237 (248)
                      .-++.  .|  .++|+|+=|+|-=...+-+..-.++|++=|=+|+.- -.++.|-+|-.||.+.++..+     ..||+|
T Consensus        61 ~~~~~--~~--~~~D~vf~a~p~~~s~~~~~~~~~~g~~VIDlS~~fR~~~~~p~~vPEvn~~~i~~~~~~~~~~~iIan  136 (344)
T PLN02383         61 ELTED--SF--DGVDIALFSAGGSISKKFGPIAVDKGAVVVDNSSAFRMEEGVPLVIPEVNPEAMKHIKLGKGKGALIAN  136 (344)
T ss_pred             eCCHH--HH--cCCCEEEECCCcHHHHHHHHHHHhCCCEEEECCchhhcCCCCceECCCcCHHHHHhhhhcccCCcEEEC
Confidence            22333  34  378999977765433333333334565322244432 123678888899988876431     238888


Q ss_pred             cC
Q 025797          238 WM  239 (248)
Q Consensus       238 AS  239 (248)
                      ..
T Consensus       137 Pg  138 (344)
T PLN02383        137 PN  138 (344)
T ss_pred             CC
Confidence            53

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=84.90  E-value=2  Score=33.67  Aligned_cols=31  Identities=35%  Similarity=0.560  Sum_probs=24.0

Q ss_pred             eEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797           88 KVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVND  120 (248)
Q Consensus        88 kV~INGF-GRIGRlvlR~~~~~~~~~l~iVaIND  120 (248)
                      ||+|.|. |++|+.+++.+...  +.+++++|-+
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~--~~~~l~av~~   32 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEH--PDFEVVALAA   32 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcC--CCceEEEEEe
Confidence            5899995 99999998877653  3578888843

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=84.88  E-value=1.3  Score=41.72  Aligned_cols=31  Identities=29%  Similarity=0.446  Sum_probs=24.6

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND  120 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND  120 (248)
                      .+|+|.|+|+||+.+++.+...   ..+|++.+.
T Consensus       147 ~~VgIIG~G~IG~~vA~~L~~~---G~~V~~~d~  177 (330)
T PRK12480        147 MTVAIIGTGRIGAATAKIYAGF---GATITAYDA  177 (330)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC---CCEEEEEeC
Confidence            5899999999999999987642   467776653

>PRK14030 glutamate dehydrogenase; Provisional

Probab=84.77  E-value=5  Score=39.94  Aligned_cols=71  Identities=17%  Similarity=0.116  Sum_probs=47.6

Q ss_pred             CCcCHHHHHHhhccccccCCCCCccccccceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC---------CChhh
Q 025797           56 RDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS---------GGVKN  126 (248)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~---------~~~e~  126 (248)
                      ++..+.-++..-+... +.   .     ....+|+|-|||-+|..+++.+.+.   ..+||+|.|.         .|++.
T Consensus       207 Tg~Gv~~~~~~~~~~~-g~---~-----l~g~~vaIQGfGnVG~~aA~~L~e~---GakvVavSD~~G~i~d~~Gld~~~  274 (445)
T PRK14030        207 TGFGALYFVHQMLETK-GI---D-----IKGKTVAISGFGNVAWGAATKATEL---GAKVVTISGPDGYIYDPDGISGEK  274 (445)
T ss_pred             cHHHHHHHHHHHHHHc-CC---C-----cCCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEEcCCceEECCCCCCHHH
Confidence            4445655655554332 11   1     1346899999999999999988764   4689997653         35666


Q ss_pred             hhhhccccCcCc
Q 025797          127 ASHLLKYDSLLG  138 (248)
Q Consensus       127 ~ayLLkYDStHG  138 (248)
                      +.+|++|-..+|
T Consensus       275 l~~l~~~k~~~~  286 (445)
T PRK14030        275 IDYMLELRASGN  286 (445)
T ss_pred             HHHHHHHHHhcC
Confidence            778888855554

>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]

Probab=84.73  E-value=1.3  Score=42.45  Aligned_cols=34  Identities=24%  Similarity=0.300  Sum_probs=26.8

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND  120 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND  120 (248)
                      |.++|.|+|||.+|+..+|.++.+  +.+++|..=+
T Consensus         1 m~~~vvqyGtG~vGv~air~l~ak--pe~elvgawv   34 (350)
T COG3804           1 MSLRVVQYGTGSVGVAAIRGLLAK--PELELVGAWV   34 (350)
T ss_pred             CCceeEEeccchHHHHHHHHHHcC--CCCceEEEEe
Confidence            457999999999999999999865  3566665433

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=84.57  E-value=1.3  Score=42.98  Aligned_cols=31  Identities=19%  Similarity=0.383  Sum_probs=24.5

Q ss_pred             eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797           86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN  119 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN  119 (248)
                      ..+|||.|||+||+.++|.+...   .+++++.+
T Consensus       116 gktvGIIG~G~IG~~vA~~l~a~---G~~V~~~d  146 (378)
T PRK15438        116 DRTVGIVGVGNVGRRLQARLEAL---GIKTLLCD  146 (378)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHC---CCEEEEEC
Confidence            35899999999999999987543   46877654

>PLN03139 formate dehydrogenase; Provisional

Probab=84.43  E-value=1.2  Score=43.31  Aligned_cols=31  Identities=26%  Similarity=0.311  Sum_probs=24.5

Q ss_pred             eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797           86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN  119 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN  119 (248)
                      -.+|||.||||||+.++|.+...   .+++++.+
T Consensus       199 gktVGIVG~G~IG~~vA~~L~af---G~~V~~~d  229 (386)
T PLN03139        199 GKTVGTVGAGRIGRLLLQRLKPF---NCNLLYHD  229 (386)
T ss_pred             CCEEEEEeecHHHHHHHHHHHHC---CCEEEEEC
Confidence            35899999999999999987642   46777654

>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional

Probab=83.99  E-value=3.5  Score=40.28  Aligned_cols=111  Identities=21%  Similarity=0.266  Sum_probs=61.4

Q ss_pred             eeEEEeC-CChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCce-EEEecCC---cE--EECCeEE
Q 025797           87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKAD-VKIVDNE---TI--SVDGKLI  159 (248)
Q Consensus        87 vkV~ING-FGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~-V~v~e~~---~L--~inGk~I  159 (248)
                      .+|+|-| -|-||++.+.++...+ .+++|+++--..+.+.+.-+.+-      |... |-+.++.   .|  ...+..+
T Consensus         2 k~VaILGsTGSIG~~tL~vi~~~p-~~f~VvaLaa~~n~~~l~~q~~~------f~p~~v~i~~~~~~~~l~~~l~~~~~   74 (385)
T PRK05447          2 KRITILGSTGSIGTQTLDVIRRNP-DRFRVVALSAGKNVELLAEQARE------FRPKYVVVADEEAAKELKEALAAAGI   74 (385)
T ss_pred             ceEEEEcCChHHHHHHHHHHHhCc-cccEEEEEEcCCCHHHHHHHHHH------hCCCEEEEcCHHHHHHHHHhhccCCc
Confidence            4899999 9999999998765433 36899999743344444433321      2212 2221110   00  0112224


Q ss_pred             EEEecCC-CCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEE
Q 025797          160 KVVSNRD-PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII  206 (248)
Q Consensus       160 ~v~~~~d-P~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVII  206 (248)
                      +++...+ ..++ -..-.+|+||++++-+...+-.-.=|++| |+|.+
T Consensus        75 ~v~~G~~~~~~l-~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aG-K~VaL  120 (385)
T PRK05447         75 EVLAGEEGLCEL-AALPEADVVVAAIVGAAGLLPTLAAIRAG-KRIAL  120 (385)
T ss_pred             eEEEChhHHHHH-hcCCCCCEEEEeCcCcccHHHHHHHHHCC-CcEEE
Confidence            4554432 2221 11225899999998886665555556677 55655

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=83.61  E-value=1.8  Score=35.95  Aligned_cols=30  Identities=23%  Similarity=0.457  Sum_probs=22.7

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN  119 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN  119 (248)
                      .||++.|+|++|+.++|.+...   ..++.+-|
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~---g~~v~~~d   31 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKA---GYEVTVYD   31 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHT---TTEEEEEE
T ss_pred             CEEEEEchHHHHHHHHHHHHhc---CCeEEeec
Confidence            5899999999999999988753   46776655

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PLN02256 arogenate dehydrogenase

Probab=83.48  E-value=2.4  Score=39.54  Aligned_cols=34  Identities=29%  Similarity=0.504  Sum_probs=26.3

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS  121 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~  121 (248)
                      ++++|+|.|+|.||..+++.+...   ..++++++..
T Consensus        35 ~~~kI~IIG~G~mG~slA~~L~~~---G~~V~~~d~~   68 (304)
T PLN02256         35 RKLKIGIVGFGNFGQFLAKTFVKQ---GHTVLATSRS   68 (304)
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhC---CCEEEEEECc
Confidence            346899999999999999987643   3577777654

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=82.94  E-value=5  Score=36.75  Aligned_cols=32  Identities=19%  Similarity=0.271  Sum_probs=24.1

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN  119 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN  119 (248)
                      |.+||+|.|.|.||..+++.+... +  .+|..++
T Consensus         1 ~~mkI~IiG~G~mG~~~A~~L~~~-G--~~V~~~~   32 (341)
T PRK08229          1 MMARICVLGAGSIGCYLGGRLAAA-G--ADVTLIG   32 (341)
T ss_pred             CCceEEEECCCHHHHHHHHHHHhc-C--CcEEEEe
Confidence            446899999999999999887653 2  4555554

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=82.83  E-value=1.8  Score=38.30  Aligned_cols=24  Identities=13%  Similarity=0.142  Sum_probs=20.4

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhC
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGR  108 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~  108 (248)
                      |++||+|.|+|.||..+++.+...
T Consensus         1 ~mm~I~iIG~G~mG~~la~~l~~~   24 (267)
T PRK11880          1 MMKKIGFIGGGNMASAIIGGLLAS   24 (267)
T ss_pred             CCCEEEEEechHHHHHHHHHHHhC
Confidence            346899999999999999988753

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=82.23  E-value=2  Score=37.40  Aligned_cols=31  Identities=23%  Similarity=0.428  Sum_probs=24.8

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS  121 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~  121 (248)
                      .+|+|-|||++|+.++|.+.+.   ..+|+ +.|.
T Consensus        29 k~v~I~G~G~vG~~~A~~L~~~---G~~Vv-v~D~   59 (200)
T cd01075          29 KTVAVQGLGKVGYKLAEHLLEE---GAKLI-VADI   59 (200)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC---CCEEE-EEcC
Confidence            5799999999999999988764   35777 4454

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=82.11  E-value=1.8  Score=43.30  Aligned_cols=31  Identities=19%  Similarity=0.315  Sum_probs=24.9

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND  120 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND  120 (248)
                      .+|+|.|||+||+.++|.+...   .+++++.+.
T Consensus       139 ktvgIiG~G~IG~~vA~~l~~f---G~~V~~~d~  169 (525)
T TIGR01327       139 KTLGVIGLGRIGSIVAKRAKAF---GMKVLAYDP  169 (525)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC---CCEEEEECC
Confidence            5799999999999999887542   468877753

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=81.73  E-value=1.8  Score=43.19  Aligned_cols=32  Identities=22%  Similarity=0.356  Sum_probs=25.4

Q ss_pred             eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797           86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND  120 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND  120 (248)
                      -.+|+|.|||+||+.++|.+...   .++|++.+.
T Consensus       140 gktvgIiG~G~IG~~vA~~l~~f---G~~V~~~d~  171 (526)
T PRK13581        140 GKTLGIIGLGRIGSEVAKRAKAF---GMKVIAYDP  171 (526)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC---CCEEEEECC
Confidence            35799999999999999987542   468887764

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=81.51  E-value=3.1  Score=40.46  Aligned_cols=102  Identities=20%  Similarity=0.188  Sum_probs=55.3

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEE-EEecC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIK-VVSNR  165 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~-v~~~~  165 (248)
                      -.|+|.|+|-+|.....-+..-.  --+|++|- . +.+++..-.++--||       -        +|.+... +..  
T Consensus       187 ~tvaV~GlGgVGlaaI~gA~~ag--A~~IiAvD-~-~~~Kl~~A~~fGAT~-------~--------vn~~~~~~vv~--  245 (366)
T COG1062         187 DTVAVFGLGGVGLAAIQGAKAAG--AGRIIAVD-I-NPEKLELAKKFGATH-------F--------VNPKEVDDVVE--  245 (366)
T ss_pred             CeEEEEeccHhHHHHHHHHHHcC--CceEEEEe-C-CHHHHHHHHhcCCce-------e--------ecchhhhhHHH--
Confidence            35999999999987665443221  23667663 2 234444434433222       1        2222110 000  


Q ss_pred             CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCC
Q 025797          166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAK  211 (248)
Q Consensus       166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk  211 (248)
                        .-..-++-|+|+++||+|....+..+-.-+..+=+-|||--|..
T Consensus       246 --~i~~~T~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~iGv~~~  289 (366)
T COG1062         246 --AIVELTDGGADYAFECVGNVEVMRQALEATHRGGTSVIIGVAGA  289 (366)
T ss_pred             --HHHHhcCCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEEecCCC
Confidence              00112234999999999998877655444444555666665553

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=81.32  E-value=1.5  Score=41.09  Aligned_cols=94  Identities=33%  Similarity=0.443  Sum_probs=49.3

Q ss_pred             EEEeCCChhhHHHHHHHhhCCCCCe-EEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCCC
Q 025797           89 VAINGFGRIGRNFLRCWHGRKDSPL-DVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDP  167 (248)
Q Consensus        89 V~INGFGRIGRlvlR~~~~~~~~~l-~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~dP  167 (248)
                      |.|.|.|++|+.++|.+..+.  .+ ++++. |. +.+.+..+.+.-  ++   ..+.             .......|+
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~--~~~~v~va-~r-~~~~~~~~~~~~--~~---~~~~-------------~~~~d~~~~   58 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRG--PFEEVTVA-DR-NPEKAERLAEKL--LG---DRVE-------------AVQVDVNDP   58 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTT--CE-EEEEE-ES-SHHHHHHHHT----TT---TTEE-------------EEE--TTTH
T ss_pred             CEEEcCcHHHHHHHHHHhcCC--CCCcEEEE-EC-CHHHHHHHHhhc--cc---ccee-------------EEEEecCCH
Confidence            688999999999999988653  34 44433 33 334443333211  01   1111             111123334


Q ss_pred             CCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEE
Q 025797          168 LQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKV  204 (248)
Q Consensus       168 ~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKV  204 (248)
                      +.+.=--.+.|+||.|.|-|....-++.-++.|+.=|
T Consensus        59 ~~l~~~~~~~dvVin~~gp~~~~~v~~~~i~~g~~yv   95 (386)
T PF03435_consen   59 ESLAELLRGCDVVINCAGPFFGEPVARACIEAGVHYV   95 (386)
T ss_dssp             HHHHHHHTTSSEEEE-SSGGGHHHHHHHHHHHT-EEE
T ss_pred             HHHHHHHhcCCEEEECCccchhHHHHHHHHHhCCCee
Confidence            3322112367999999999966666677777777644

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=80.52  E-value=2.9  Score=36.40  Aligned_cols=36  Identities=19%  Similarity=0.346  Sum_probs=26.5

Q ss_pred             eeeEEEeCCChhhHHHHHHHhhCCCCCeE-EEEEeCC
Q 025797           86 KLKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVNDS  121 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~-iVaIND~  121 (248)
                      .+||+|.|.|++|+.+++.+.......++ +++.++.
T Consensus         4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~   40 (245)
T PRK07634          4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRS   40 (245)
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCC
Confidence            46899999999999999987754222354 6667654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	248
2pkq_O	368	Crystal Structure Of The Photosynthetic A2b2-Glycer		1e-78
1nbo_O	337	The Dual Coenzyme Specificity Of Photosynthetic Gly		3e-64
1rm5_O	337	Crystal Structure Of Mutant S188a Of Photosynthetic		3e-64
1rm3_O	337	Crystal Structure Of Mutant T33a Of Photosynthetic		4e-64
2pkr_O	365	Crystal Structure Of (A+cte)4 Chimeric Form Of Phot		4e-64
3k2b_A	337	Crystal Structure Of Photosynthetic A4 Isoform Glyc		6e-62
1jn0_O	335	Crystal Structure Of The Non-Regulatory A4 Isoform		3e-60
3b1j_A	339	Crystal Structure Of Dehydrogenese Length = 339		5e-49
2d2i_A	380	Crystal Structure Of Nadp-Dependent Glyceraldehyde-		3e-48
2ep7_A	342	Structural Study Of Project Id Aq_1065 From Aquifex		1e-38
3dbv_O	334	Glyceraldehyde-3-Phosphate Dehydrogenase Mutant Wit		9e-34
1hdg_O	332	The Crystal Structure Of Holo-glyceraldehyde-3-phos		1e-33
2g82_O	331	High Resolution Structures Of Thermus Aquaticus Gly		5e-33
1cer_O	331	Determinants Of Enzyme Thermostability Observed In		6e-33
1vc2_A	331	Crystal Structure Of Glyceraldehyde 3-Phosphate Deh		1e-32
1nq5_O	334	Glyceraldehyde-3-Phosphate Dehydrogenase Mutant Wit		1e-31
1npt_O	334	Glyceraldehyde-3-Phosphate Dehydrogenase Mutant Wit		1e-31
1gd1_O	334	Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydr		1e-31
3l0d_A	356	Crystal Structure Of Glyceraldehyde-3-phosphate Deh		2e-31
1dbv_O	334	Glyceraldehyde-3-Phosphate Dehydrogenase Mutant Wit		1e-30
4dib_A	345	The Crystal Structure Of Glyceraldehyde-3-Phosphate		1e-30
3hja_A	356	Crystal Structure Of Glyceraldehyde-3-Phosphate Deh		8e-30
2i5p_O	342	Crystal Structure Of Glyceraldehyde-3-Phosphate Deh		2e-29
3gnq_A	344	Crystal Structure Of Glyceraldehyde-3-Phosphate Deh		2e-29
3doc_A	335	Crystal Structure Of Trka Glyceraldehyde-3-Phosphat		3e-28
1obf_O	335	The Crystal Structure Of Glyceraldehyde 3-Phosphate		4e-28
1vsu_A	359	Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate		4e-27
3cif_A	359	Crystal Structure Of C153s Mutant Glyceraldehyde 3-		5e-27
3cps_A	354	Crystal Structure Of Cryptosporidium Parvum Glycera		8e-27
3hq4_R	336	Crystal Structure Of C151s Mutant Of Glyceraldehyde		2e-26
3ksd_Q	336	Crystal Structure Of C151s+h178n Mutant Of Glyceral		2e-26
3lc1_P	336	Crystal Structure Of H178n Mutant Of Glyceraldehyde		2e-26
3lc7_O	339	Crystal Structure Of Apo Glyceraldehyde-3-Phosphate		2e-26
3k9q_Q	336	Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde		2e-26
2vyn_A	331	Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotet		2e-26
3vaz_P	344	Crystal Structure Of Staphylococcal Gapdh1 In A Hex		2e-26
3lvf_P	338	Crystal Structure Of Holo Glyceraldehyde-3-Phosphat		2e-26
3k73_Q	336	Crystal Structure Of Phosphate Bound Holo Glycerald		2e-26
1gae_O	330	Comparison Of The Structures Of Wild Type And A N31		2e-26
1gad_O	330	Comparison Of The Structures Of Wild Type And A N31		2e-26
1s7c_A	331	Crystal Structure Of Mes Buffer Bound Form Of Glyce		2e-26
1ywg_O	337	The Structure Of Glyceraldehyde-3-Phosphate Dehydro		7e-26
2b4r_O	345	Crystal Structure Of Glyceraldehyde-3-Phosphate Deh		8e-26
4iq8_A	340	Crystal Structure Of Glyceraldehyde-3-phosphate Deh		1e-25
3pym_A	332	Structure Of Gapdh 3 From S.Cerevisiae At 2.0 A Res		1e-25
1dc4_A	330	Structural Analysis Of Glyceraldehyde 3-Phosphate D		3e-25
3e5r_O	337	Crystal Structure And Functional Analysis Of Glycer		3e-25
3e6a_O	336	Crystal Structure And Functional Analysis Of Glycer		4e-25
1znq_O	338	Crsytal Structure Of Human Liver Gapdh Length = 338		1e-23
1u8f_O	335	Crystal Structure Of Human Placental Glyceraldehyde		1e-23
1j0x_O	332	Crystal Structure Of The Rabbit Muscle Glyceraldehy		4e-23
1ihx_A	333	Crystal Structure Of Two D-Glyceraldehyde-3-Phospha		8e-23
2x0n_A	359	Structure Of Glycosomal Glyceraldehyde-3-Phosphate		8e-23
1gyp_A	358	Crystal Structure Of Glycosomal Glyceraldehyde-3-Ph		1e-22
1a7k_A	360	Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase		1e-22
3h9e_B	346	Crystal Structure Of Human Sperm-Specific Glycerald		1e-22
1gpd_G	334	Studies Of Asymmetry In The Three-Dimensional Struc		2e-22
4gpd_1	333	The Structure Of Lobster Apo-D-Glyceraldehyde-3-Pho		2e-22
1szj_G	333	Structure Of Holo-Glyceraldehyde-3-Phosphate-Dehydr		2e-22
1dss_G	333	Structure Of Active-Site Carboxymethylated D-Glycer		2e-22
1k3t_A	359	Structure Of Glycosomal Glyceraldehyde-3-Phosphate		3e-22
3dmt_C	359	Structure Of Glycosomal Glyceraldehyde-3-Phosphate		3e-22
3gpd_R	334	Twinning In Crystals Of Human Skeletal Muscle D-Gly		3e-21
2x5k_O	339	Structure Of An Active Site Mutant Of The D-Erythro		4e-21
2vyn_D	334	Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotet		4e-21
2xf8_A	338	Structure Of The D-Erythrose-4-Phosphate Dehydrogen		4e-21
2x5j_O	339	Crystal Structure Of The Apoform Of The D-Erythrose		4e-21
3sth_A	361	Crystal Structure Of Glyceraldehyde-3-Phosphate Deh		6e-21

>pdb|2PKQ|O Chain O, Crystal Structure Of The Photosynthetic A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase, Complexed With Nadp Length = 368

Iteration: 1
 Score =  288 bits (738), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 138/152 (90%), Positives = 148/152 (97%)
Query: 86  KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
           KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVK+A+HLLKYDS+LGTFKADVK
Sbjct: 1   KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKSATHLLKYDSILGTFKADVK 60
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
           I+DNET S+DGK IKVVSNRDPL+LPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI
Sbjct: 61  IIDNETFSIDGKPIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 120
Query: 206 ITAPAKGADIPTYVVGVNEKDYDHEVANIVRS 237
           ITAPAKG+DIPTYVVGVNEKDY H+VANI+ +
Sbjct: 121 ITAPAKGSDIPTYVVGVNEKDYGHDVANIISN 152

>pdb|1NBO|O Chain O, The Dual Coenzyme Specificity Of Photosynthetic Glyceraldehyde-3- Phosphate Dehydrogenase Interpreted By The Crystal Structure Of A4 Isoform Complexed With Nad Length = 337

Iteration: 1
 Score =  241 bits (614), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 115/144 (79%), Positives = 129/144 (89%), Gaps = 1/144 (0%)
Query: 86  KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
           KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVV+ND+GGVK ASHLLKYDS+LGTF ADVK
Sbjct: 1   KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVK 60
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
              +  ISVDGK+IKVVS+R+P+ LPW ++GID+VIEGTGVFVD  GAGKH+QAGAKKV+
Sbjct: 61  TAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVL 120
Query: 206 ITAPAKGADIPTYVVGVNEKDYDH 229
           ITAP KG DIPTYVVGVNE+ Y H
Sbjct: 121 ITAPGKG-DIPTYVVGVNEEGYTH 143

>pdb|1RM5|O Chain O, Crystal Structure Of Mutant S188a Of Photosynthetic Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform, Complexed With Nadp Length = 337

Iteration: 1
 Score =  241 bits (614), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 115/144 (79%), Positives = 129/144 (89%), Gaps = 1/144 (0%)
Query: 86  KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
           KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVV+ND+GGVK ASHLLKYDS+LGTF ADVK
Sbjct: 1   KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVK 60
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
              +  ISVDGK+IKVVS+R+P+ LPW ++GID+VIEGTGVFVD  GAGKH+QAGAKKV+
Sbjct: 61  TAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVL 120
Query: 206 ITAPAKGADIPTYVVGVNEKDYDH 229
           ITAP KG DIPTYVVGVNE+ Y H
Sbjct: 121 ITAPGKG-DIPTYVVGVNEEGYTH 143

>pdb|1RM3|O Chain O, Crystal Structure Of Mutant T33a Of Photosynthetic Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform, Complexed With Nadp Length = 337

Iteration: 1
 Score =  241 bits (614), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 115/144 (79%), Positives = 129/144 (89%), Gaps = 1/144 (0%)
Query: 86  KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
           KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVV+ND+GGVK ASHLLKYDS+LGTF ADVK
Sbjct: 1   KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDAGGVKQASHLLKYDSILGTFDADVK 60
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
              +  ISVDGK+IKVVS+R+P+ LPW ++GID+VIEGTGVFVD  GAGKH+QAGAKKV+
Sbjct: 61  TAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVL 120
Query: 206 ITAPAKGADIPTYVVGVNEKDYDH 229
           ITAP KG DIPTYVVGVNE+ Y H
Sbjct: 121 ITAPGKG-DIPTYVVGVNEEGYTH 143

>pdb|2PKR|O Chain O, Crystal Structure Of (A+cte)4 Chimeric Form Of Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase, Complexed With Nadp Length = 365

Iteration: 1
 Score =  241 bits (614), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 115/144 (79%), Positives = 129/144 (89%), Gaps = 1/144 (0%)
Query: 86  KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
           KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVV+ND+GGVK ASHLLKYDS+LGTF ADVK
Sbjct: 1   KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVK 60
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
              +  ISVDGK+IKVVS+R+P+ LPW ++GID+VIEGTGVFVD  GAGKH+QAGAKKV+
Sbjct: 61  TAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVL 120
Query: 206 ITAPAKGADIPTYVVGVNEKDYDH 229
           ITAP KG DIPTYVVGVNE+ Y H
Sbjct: 121 ITAPGKG-DIPTYVVGVNEEGYTH 143

>pdb|3K2B|A Chain A, Crystal Structure Of Photosynthetic A4 Isoform Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With Nad, From Arabidopsis Thaliana Length = 337

Iteration: 1
 Score =  233 bits (595), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 115/146 (78%), Positives = 124/146 (84%), Gaps = 1/146 (0%)
Query: 85  AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADV 144
           AKLKVAINGFGRIGRNFLRCWHGRKDSPLD++ +ND+GGVK ASHLLKYDS LG F ADV
Sbjct: 1   AKLKVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTGGVKQASHLLKYDSTLGIFDADV 60
Query: 145 KIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKV 204
           K      ISVDGK+I+VVSNR+P  LPW ELGIDIVIEGTGVFVD  GAGKHI+AGAKKV
Sbjct: 61  KPSGETAISVDGKIIQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKHIEAGAKKV 120
Query: 205 IITAPAKGADIPTYVVGVNEKDYDHE 230
           IITAP KG DIPTYVVGVN   Y H+
Sbjct: 121 IITAPGKG-DIPTYVVGVNADAYSHD 145

>pdb|1JN0|O Chain O, Crystal Structure Of The Non-Regulatory A4 Isoform Of Spinach Chloroplast Glyceraldehyde-3-Phosphate Dehydrogenase Complexed With Nadp Length = 335

Iteration: 1
 Score =  228 bits (580), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 113/144 (78%), Positives = 127/144 (88%), Gaps = 3/144 (2%)
Query: 86  KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
           KLKVAINGFGRIGRNFLRCWHG KDSPLDVVV+ND+GGVK ASHLLKYDS+LGTF ADVK
Sbjct: 1   KLKVAINGFGRIGRNFLRCWHG-KDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVK 59
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
              +  ISV GK+IKVVS+R+P+ LPW ++GID+VIEGTGVFVD  GAGKH+QAGAKKV+
Sbjct: 60  TAGDSAISV-GKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVL 118
Query: 206 ITAPAKGADIPTYVVGVNEKDYDH 229
           ITAP KG DIPTYVVGVNE+ Y H
Sbjct: 119 ITAPGKG-DIPTYVVGVNEEGYTH 141

>pdb|3B1J|A Chain A, Crystal Structure Of Dehydrogenese Length = 339

Iteration: 1
 Score =  190 bits (483), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 86/144 (59%), Positives = 113/144 (78%), Gaps = 1/144 (0%)
Query: 87  LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
           ++VAINGFGRIGRNFLRCW GR+++ L+VV +N++   + A+HLL+YDS+LG F AD+  
Sbjct: 3   IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADIS- 61
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
            D  +I+V+GK +K+V +R+PL LPW E  ID+VIE TGVFV   GA KHIQAGAKKV+I
Sbjct: 62  YDENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLI 121
Query: 207 TAPAKGADIPTYVVGVNEKDYDHE 230
           TAP KG  + TYV+GVN+ +Y HE
Sbjct: 122 TAPGKGEGVGTYVIGVNDSEYRHE 145

>pdb|2D2I|A Chain A, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3- Phosphate Dehydrogenase From Synechococcus Sp. Complexed With Nadp+ Length = 380

Iteration: 1
 Score =  188 bits (477), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 85/144 (59%), Positives = 112/144 (77%), Gaps = 1/144 (0%)
Query: 87  LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
           ++VAINGFGRIGRNFLRCW GR+++ L+VV +N++   + A+HLL+YDS+LG F AD+  
Sbjct: 3   IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADIS- 61
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
            D  +I+V+GK +K+V +R+PL LPW E  ID+VIE TGVFV   GA KHIQAGAKKV+I
Sbjct: 62  YDENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLI 121
Query: 207 TAPAKGADIPTYVVGVNEKDYDHE 230
           TAP K   + TYV+GVN+ +Y HE
Sbjct: 122 TAPGKAEGVGTYVIGVNDSEYRHE 145

>pdb|2EP7|A Chain A, Structural Study Of Project Id Aq_1065 From Aquifex Aeolicus Vf5 Length = 342

Iteration: 1
 Score =  155 bits (393), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 82/149 (55%), Positives = 108/149 (72%), Gaps = 4/149 (2%)
Query: 87  LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
           +KV INGFGRIGR+F R   GR++  +++V +ND    K+ +HLLKYDS+ G FK  V+ 
Sbjct: 3   IKVGINGFGRIGRSFFRASWGREE--IEIVAINDLTDAKHLAHLLKYDSVHGIFKGSVEA 60
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
            D ++I VDGK IKV + +DP Q+PW +LG+D+VIE TGVF D   A KH+Q GAKKVII
Sbjct: 61  KD-DSIVVDGKEIKVFAQKDPSQIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVII 119
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIV 235
           TAPAK  DI T V+GVNE+ Y+ +  NI+
Sbjct: 120 TAPAKNPDI-TVVLGVNEEKYNPKEHNII 147

>pdb|3DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu 33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188 Replaced By Ser Complexed With Nad+ Length = 334

Iteration: 1
 Score =  140 bits (352), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 75/149 (50%), Positives = 99/149 (66%), Gaps = 4/149 (2%)
Query: 87  LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
           +KV INGFGRIGRN  R     K+  ++VV VND+GG    +HLLKYDS+ G   A+V +
Sbjct: 2   VKVGINGFGRIGRNVFRA--ALKNPDIEVVAVNDTGGANTLAHLLKYDSVHGRLDAEVSV 59
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
             N  + V+GK I V + RDP  L W E+G+DIV+E TG F     A KH++AGAKKVII
Sbjct: 60  NGNNLV-VNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIV 235
           +APAK  DI T V+GVN+  YD +  +++
Sbjct: 119 SAPAKNEDI-TIVMGVNQDKYDPKAHHVI 146

>pdb|1HDG|O Chain O, The Crystal Structure Of Holo-glyceraldehyde-3-phosphate Dehydrogenase From The Hyperthermophilic Bacterium Thermotoga Maritima At 2.5 Angstroms Resolution Length = 332

Iteration: 1
 Score =  139 bits (351), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 76/137 (55%), Positives = 93/137 (67%), Gaps = 2/137 (1%)
Query: 88  KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIV 147
           +VAINGFGRIGR   R  + RK+  ++VV +ND    K  +HLLKYDS+   F   V+  
Sbjct: 2   RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYT 61
Query: 148 DNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207
           +N  I VDGK IKV +  DP +LPW +LG+D VIE TGVF +   A  H+QAGAKKVIIT
Sbjct: 62  ENSLI-VDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIIT 120
Query: 208 APAKGADIPTYVVGVNE 224
           APAKG DI T V+G NE
Sbjct: 121 APAKGEDI-TVVIGCNE 136

>pdb|2G82|O Chain O, High Resolution Structures Of Thermus Aquaticus Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's Loop Motion In Catalysis Length = 331

Iteration: 1
 Score =  137 bits (345), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 72/142 (50%), Positives = 94/142 (66%), Gaps = 5/142 (3%)
Query: 87  LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
           +KV INGFGRIGR   R  H R    ++V ++ND    K  +HLLKYDS+   F  +V  
Sbjct: 1   MKVGINGFGRIGRQVFRILHSRG---VEVALINDLTDNKTLAHLLKYDSIYHRFPGEVA- 56
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
            D++ + VDGK I+  + +DP ++PWAE G+ +VIE TGVF D   A  H++ GAKKVII
Sbjct: 57  YDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVII 116
Query: 207 TAPAKGADIPTYVVGVNEKDYD 228
           TAPAKG DI T V+GVN + YD
Sbjct: 117 TAPAKGEDI-TIVMGVNHEAYD 137

>pdb|1CER|O Chain O, Determinants Of Enzyme Thermostability Observed In The Molecular Structure Of Thermus Aquaticus D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5 Angstroms Resolution Length = 331

Iteration: 1
 Score =  137 bits (345), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 72/142 (50%), Positives = 94/142 (66%), Gaps = 5/142 (3%)
Query: 87  LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
           +KV INGFGRIGR   R  H R    ++V ++ND    K  +HLLKYDS+   F  +V  
Sbjct: 1   MKVGINGFGRIGRQVFRILHSRG---VEVALINDLTDNKTLAHLLKYDSIYHRFPGEVA- 56
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
            D++ + VDGK I+  + +DP ++PWAE G+ +VIE TGVF D   A  H++ GAKKVII
Sbjct: 57  YDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVII 116
Query: 207 TAPAKGADIPTYVVGVNEKDYD 228
           TAPAKG DI T V+GVN + YD
Sbjct: 117 TAPAKGEDI-TIVMGVNHEAYD 137

>pdb|1VC2|A Chain A, Crystal Structure Of Glyceraldehyde 3-Phosphate Dehydrogenase From Thermus Thermophilus Hb8 Length = 331

Iteration: 1
 Score =  136 bits (342), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 72/142 (50%), Positives = 92/142 (64%), Gaps = 5/142 (3%)
Query: 87  LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
           +KV INGFGRIGR   R  H R    ++V ++ND    K  +HLLKYDS  G F   V  
Sbjct: 1   MKVGINGFGRIGRQVFRILHERG---VEVALINDLTDNKTLAHLLKYDSTYGRFPGAVG- 56
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
            D E + VDGK I+  + +DP ++PW + G+ +V+E TGVF DG  A  H++AGAKKVII
Sbjct: 57  YDEENLYVDGKAIRATAIKDPREIPWKQAGVGVVVESTGVFTDGEKARAHLEAGAKKVII 116
Query: 207 TAPAKGADIPTYVVGVNEKDYD 228
           TAPAK  DI T V+GVN + YD
Sbjct: 117 TAPAKNEDI-TVVLGVNHEQYD 137

>pdb|1NQ5|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys 149 Replaced By Ser Complexed With Nad+ Length = 334

Iteration: 1
 Score =  132 bits (333), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 73/149 (48%), Positives = 96/149 (64%), Gaps = 4/149 (2%)
Query: 87  LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
           +KV INGFGRIGRN  R     K+  ++VV VND       +HLLKYDS+ G   A+V +
Sbjct: 2   VKVGINGFGRIGRNVFRA--ALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSV 59
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
             N  + V+GK I V + RDP  L W E+G+DIV+E TG F     A KH++AGAKKVII
Sbjct: 60  NGNNLV-VNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIV 235
           +APAK  DI T V+GVN+  YD +  +++
Sbjct: 119 SAPAKNEDI-TIVMGVNQDKYDPKAHHVI 146

>pdb|1NPT|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys 149 Replaced By Ala Complexed With Nad+ Length = 334

Iteration: 1
 Score =  132 bits (333), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 73/149 (48%), Positives = 96/149 (64%), Gaps = 4/149 (2%)
Query: 87  LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
           +KV INGFGRIGRN  R     K+  ++VV VND       +HLLKYDS+ G   A+V +
Sbjct: 2   VKVGINGFGRIGRNVFRA--ALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSV 59
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
             N  + V+GK I V + RDP  L W E+G+DIV+E TG F     A KH++AGAKKVII
Sbjct: 60  NGNNLV-VNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIV 235
           +APAK  DI T V+GVN+  YD +  +++
Sbjct: 119 SAPAKNEDI-TIVMGVNQDKYDPKAHHVI 146

>pdb|1GD1|O Chain O, Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase From Bacillus Stearothermophilus At 1.8 Angstroms Resolution Length = 334

Iteration: 1
 Score =  132 bits (333), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 73/149 (48%), Positives = 96/149 (64%), Gaps = 4/149 (2%)
Query: 87  LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
           +KV INGFGRIGRN  R     K+  ++VV VND       +HLLKYDS+ G   A+V +
Sbjct: 2   VKVGINGFGRIGRNVFRA--ALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSV 59
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
             N  + V+GK I V + RDP  L W E+G+DIV+E TG F     A KH++AGAKKVII
Sbjct: 60  NGNNLV-VNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIV 235
           +APAK  DI T V+GVN+  YD +  +++
Sbjct: 119 SAPAKNEDI-TIVMGVNQDKYDPKAHHVI 146

>pdb|3L0D|A Chain A, Crystal Structure Of Glyceraldehyde-3-phosphate Dehydrogenase From Bartonella Henselae With Bound Nad Length = 356

Iteration: 1
 Score =  132 bits (332), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 70/141 (49%), Positives = 96/141 (68%), Gaps = 6/141 (4%)
Query: 87  LKVAINGFGRIGRNFLRCW--HGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADV 144
           ++VAINGFGRIGRN LR     GR+D  ++VV +ND G V+  +HLL+YDS+ G F   V
Sbjct: 24  VRVAINGFGRIGRNILRAIIESGRQD--IEVVALNDLGSVETNAHLLRYDSVHGCFPGTV 81
Query: 145 KIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKV 204
           ++V  + I +   LIKV + RDP QLPW  L IDI +E TG+F     A  H+ AGAK+V
Sbjct: 82  QVV-GDAIDIGSSLIKVFAERDPAQLPWKALDIDIALECTGIFTARDKASAHLDAGAKRV 140
Query: 205 IITAPAKGADIPTYVVGVNEK 225
           +++AP++GAD+ T V GVN +
Sbjct: 141 LVSAPSEGADL-TVVYGVNHQ 160

>pdb|1DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp 32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188 Replaced By Ser Complexed With Nad+ Length = 334

Iteration: 1
 Score =  129 bits (325), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 72/149 (48%), Positives = 95/149 (63%), Gaps = 4/149 (2%)
Query: 87  LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
           +KV INGFGRIGRN  R     K+  ++VV VN        +HLLKYDS+ G   A+V +
Sbjct: 2   VKVGINGFGRIGRNVFRA--ALKNPDIEVVAVNGLTDANTLAHLLKYDSVHGRLDAEVSV 59
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
             N  + V+GK I V + RDP  L W E+G+DIV+E TG F     A KH++AGAKKVII
Sbjct: 60  NGNNLV-VNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIV 235
           +APAK  DI T V+GVN+  YD +  +++
Sbjct: 119 SAPAKNEDI-TIVMGVNQDKYDPKAHHVI 146

>pdb|4DIB|A Chain A, The Crystal Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase From Bacillus Anthracis Str. Sterne Length = 345

Iteration: 1
 Score =  129 bits (325), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 68/144 (47%), Positives = 96/144 (66%), Gaps = 4/144 (2%)
Query: 85  AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADV 144
           A  +VAINGFGRIGR   R     K+S  ++V +N S   +  +HL+KYD++ G F   V
Sbjct: 3   AMTRVAINGFGRIGRMVFR--QAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDGTV 60
Query: 145 KIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKV 204
           +  ++  + VDGK+I++++NRDP +LPW +LG+++VIE TG F     A  H++AGAKKV
Sbjct: 61  EAFEDHLL-VDGKMIRLLNNRDPKELPWTDLGVEVVIEATGKFNSKEKAILHVEAGAKKV 119
Query: 205 IITAPAKGADIPTYVVGVNEKDYD 228
           I+TAP K  D+ T VVGVNE   D
Sbjct: 120 ILTAPGKNEDV-TIVVGVNEDQLD 142

>pdb|3HJA|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase From Borrelia Burgdorferi Length = 356

Iteration: 1
 Score =  127 bits (318), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 74/162 (45%), Positives = 101/162 (62%), Gaps = 10/162 (6%)
Query: 75  GSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYD 134
           G++  + +    +K+AINGFGRIGRN  +    R    +D+V +ND    K  +HLLKYD
Sbjct: 10  GTLEAQTQGPGSMKLAINGFGRIGRNVFKIAFERG---IDIVAINDLTDPKTLAHLLKYD 66
Query: 135 SLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF----VDG 190
           S  G +   V+  D   I VDG+ IK+++ RDP  LPWA+LGID+VIE TGVF     D 
Sbjct: 67  STFGVYNKKVESRDG-AIVVDGREIKIIAERDPKNLPWAKLGIDVVIESTGVFSSATSDK 125
Query: 191 PGAGKHI-QAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEV 231
            G   H+  AGAKKVI+T PAK  +I T V+GVN+ D + ++
Sbjct: 126 GGYLDHVNHAGAKKVILTVPAKD-EIKTIVLGVNDHDINSDL 166

>pdb|2I5P|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase Isoform 1 From K. Marxianus Length = 342

Iteration: 1
 Score =  125 bits (315), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/157 (45%), Positives = 97/157 (61%), Gaps = 6/157 (3%)
Query: 75  GSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKY 133
           GS       +  + +AINGFGRIGR  LR    RK+  +DVV +ND    V  A+++ KY
Sbjct: 3   GSHHHHHHGIQMVSIAINGFGRIGRLVLRIALERKN--IDVVAINDPFISVDYAAYMFKY 60
Query: 134 DSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGA 193
           DS  G +K +V   D   + ++GK + V   +DP  LPW +LG+DI ++ TGVF +   A
Sbjct: 61  DSTHGKYKGEVSH-DGSNLIINGKKVAVFQEKDPATLPWGKLGVDIAVDSTGVFKELDSA 119
Query: 194 GKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHE 230
            KHI AGAKKV+ITAP+K A  P +VVGVNE  Y+ E
Sbjct: 120 QKHIDAGAKKVVITAPSKTA--PMFVVGVNEDKYNGE 154

>pdb|3GNQ|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase, Type I From Burkholderia Pseudomallei Length = 344

Iteration: 1
 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 66/140 (47%), Positives = 93/140 (66%), Gaps = 4/140 (2%)
Query: 87  LKVAINGFGRIGRNFLRCWHGR-KDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
           ++VAING+GRIGRN LR ++   K   L++V +ND G  K  +HL +YD+  G F  +V 
Sbjct: 11  IRVAINGYGRIGRNTLRAFYENGKKHDLEIVAINDLGDAKTNAHLTQYDTAHGKFPGEVS 70
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
            VD + + V+G  I+V++NR+P +LPW ELG+D+V+E TG F     A  H++ GAKKVI
Sbjct: 71  -VDGDYLVVNGDRIRVLANRNPAELPWGELGVDVVMECTGFFTSKEKASAHLKGGAKKVI 129
Query: 206 ITAPAKGADI-PTYVVGVNE 224
           I+AP  G D+  T V GVN 
Sbjct: 130 ISAPG-GKDVDATIVYGVNH 148

>pdb|3DOC|A Chain A, Crystal Structure Of Trka Glyceraldehyde-3-Phosphate Dehydrogenase From Brucella Melitensis Length = 335

Iteration: 1
 Score =  121 bits (304), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 66/137 (48%), Positives = 91/137 (66%), Gaps = 2/137 (1%)
Query: 87  LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
           ++VAINGFGRIGRN LR       + + VV +ND G V+  +HLL+YDS+ G F  +V++
Sbjct: 3   VRVAINGFGRIGRNILRAIVESGRTDIQVVAINDLGPVETNAHLLRYDSVHGRFPKEVEV 62
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
              +TI V    IKV + R+P +LPW E  +DI +E TG+F     A  H++AGAK+VI+
Sbjct: 63  A-GDTIDVGYGPIKVHAVRNPAELPWKEENVDIALECTGIFTSRDKAALHLEAGAKRVIV 121
Query: 207 TAPAKGADIPTYVVGVN 223
           +APA GAD+ T V GVN
Sbjct: 122 SAPADGADL-TVVYGVN 137

>pdb|1OBF|O Chain O, The Crystal Structure Of Glyceraldehyde 3-Phosphate Dehydrogenase From Alcaligenes Xylosoxidans At 1.7 Resolution. Length = 335

Iteration: 1
 Score =  121 bits (303), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 67/140 (47%), Positives = 90/140 (64%), Gaps = 4/140 (2%)
Query: 87  LKVAINGFGRIGRNFLRC-WHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
           ++VAING+GRIGRN LR  + G K   +++V +ND G  K  +HL +YD+  G F   V 
Sbjct: 2   IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVS 61
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
            V+   + V+G  I+V +NR+P QLPW  L +D+V+E TG F     AG HI+ GAKKVI
Sbjct: 62  -VNGSYMVVNGDKIRVDANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVI 120
Query: 206 ITAPAKGADI-PTYVVGVNE 224
           I+AP  GAD+  T V GVN 
Sbjct: 121 ISAPG-GADVDATVVYGVNH 139

>pdb|1VSU|A Chain A, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate Dehydrogenase From Cryptosporidium Parvum Length = 359

Iteration: 1
 Score =  117 bits (294), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 70/164 (42%), Positives = 96/164 (58%), Gaps = 7/164 (4%)
Query: 75  GSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKY 133
           G VP      A L   INGFGRIGR  LR    R D  + VV +ND    V+  ++LLKY
Sbjct: 13  GLVPRGSHMTATL--GINGFGRIGRLVLRACMERND--ITVVAINDPFMDVEYMAYLLKY 68
Query: 134 DSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGA 193
           DS+ G F   V+ V  + + ++GK++KV   +DP ++PW   G  IV E TGVF     A
Sbjct: 69  DSVHGNFNGTVE-VSGKDLCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKA 127
Query: 194 GKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRS 237
             H++ GAKKVII+AP K  ++P YV+GVN  +YD    N++ +
Sbjct: 128 SLHLKGGAKKVIISAPPKD-NVPMYVMGVNNTEYDPSKFNVISN 170

>pdb|3CIF|A Chain A, Crystal Structure Of C153s Mutant Glyceraldehyde 3-Phosphate Dehydrogenase From Cryptosporidium Parvum Length = 359

Iteration: 1
 Score =  117 bits (294), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 70/164 (42%), Positives = 96/164 (58%), Gaps = 7/164 (4%)
Query: 75  GSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKY 133
           G VP      A L   INGFGRIGR  LR    R D  + VV +ND    V+  ++LLKY
Sbjct: 13  GLVPRGSHMTATL--GINGFGRIGRLVLRACMERND--ITVVAINDPFMDVEYMAYLLKY 68
Query: 134 DSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGA 193
           DS+ G F   V+ V  + + ++GK++KV   +DP ++PW   G  IV E TGVF     A
Sbjct: 69  DSVHGNFNGTVE-VSGKDLCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKA 127
Query: 194 GKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRS 237
             H++ GAKKVII+AP K  ++P YV+GVN  +YD    N++ +
Sbjct: 128 SLHLKGGAKKVIISAPPKD-NVPMYVMGVNNTEYDPSKFNVISN 170

>pdb|3CPS|A Chain A, Crystal Structure Of Cryptosporidium Parvum Glyceraldehyde-3-Phosphate Dehydrogenase Length = 354

Iteration: 1
 Score =  117 bits (292), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 65/150 (43%), Positives = 92/150 (61%), Gaps = 5/150 (3%)
Query: 89  VAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIV 147
           + INGFGRIGR  LR    R D  + VV +ND    V+  ++LLKYDS+ G F   V+ V
Sbjct: 20  LGINGFGRIGRLVLRACMERND--ITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVE-V 76
Query: 148 DNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207
             + + ++GK++KV   +DP ++PW   G  IV E TGVF     A  H++ GAKKVII+
Sbjct: 77  SGKDLCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIIS 136
Query: 208 APAKGADIPTYVVGVNEKDYDHEVANIVRS 237
           AP K  ++P YV+GVN  +YD    N++ +
Sbjct: 137 APPKD-NVPMYVMGVNNTEYDPSKFNVISN 165

>pdb|3HQ4|R Chain R, Crystal Structure Of C151s Mutant Of Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1) Complexed With Nad From Staphylococcus Aureus Mrsa252 At 2.2 Angstrom Resolution Length = 336

Iteration: 1
 Score =  115 bits (289), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/142 (46%), Positives = 89/142 (62%), Gaps = 4/142 (2%)
Query: 87  LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
           +KVAINGFGRIGR   R    ++   L+VV VND       +HLLKYD++ G F  +V++
Sbjct: 3   VKVAINGFGRIGRLAFRRI--QEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEV 60
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
           VD     V+GK +K  S  D  +LPW +L ID+V+E TG + D   A  HI+AGAKKV+I
Sbjct: 61  VDG-GFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 119
Query: 207 TAPAKGADIPTYVVGVNEKDYD 228
           +APA G D+ T V   N ++ D
Sbjct: 120 SAPATG-DLKTIVFNTNHQELD 140

>pdb|3KSD|Q Chain Q, Crystal Structure Of C151s+h178n Mutant Of Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1) From Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.2 Angstrom Resolution Length = 336

Iteration: 1
 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/142 (46%), Positives = 89/142 (62%), Gaps = 4/142 (2%)
Query: 87  LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
           +KVAINGFGRIGR   R    ++   L+VV VND       +HLLKYD++ G F  +V++
Sbjct: 3   VKVAINGFGRIGRLAFRRI--QEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEV 60
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
           VD     V+GK +K  S  D  +LPW +L ID+V+E TG + D   A  HI+AGAKKV+I
Sbjct: 61  VDG-GFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 119
Query: 207 TAPAKGADIPTYVVGVNEKDYD 228
           +APA G D+ T V   N ++ D
Sbjct: 120 SAPATG-DLKTIVFNTNHQELD 140

>pdb|3LC1|P Chain P, Crystal Structure Of H178n Mutant Of Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1) From Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.0 Angstrom Resolution. Length = 336

Iteration: 1
 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/142 (46%), Positives = 89/142 (62%), Gaps = 4/142 (2%)
Query: 87  LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
           +KVAINGFGRIGR   R    ++   L+VV VND       +HLLKYD++ G F  +V++
Sbjct: 3   VKVAINGFGRIGRLAFR--RIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEV 60
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
           VD     V+GK +K  S  D  +LPW +L ID+V+E TG + D   A  HI+AGAKKV+I
Sbjct: 61  VDG-GFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 119
Query: 207 TAPAKGADIPTYVVGVNEKDYD 228
           +APA G D+ T V   N ++ D
Sbjct: 120 SAPATG-DLKTIVFNTNHQELD 140

>pdb|3LC7|O Chain O, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicllin Resistant Staphylococcus Aureus (Mrsa252) Length = 339

Iteration: 1
 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/142 (46%), Positives = 89/142 (62%), Gaps = 4/142 (2%)
Query: 87  LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
           +KVAINGFGRIGR   R    ++   L+VV VND       +HLLKYD++ G F  +V++
Sbjct: 6   VKVAINGFGRIGRLAFRRI--QEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEV 63
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
           VD     V+GK +K  S  D  +LPW +L ID+V+E TG + D   A  HI+AGAKKV+I
Sbjct: 64  VDG-GFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 122
Query: 207 TAPAKGADIPTYVVGVNEKDYD 228
           +APA G D+ T V   N ++ D
Sbjct: 123 SAPATG-DLKTIVFNTNHQELD 143

>pdb|3K9Q|Q Chain Q, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde 3-Phosphate Dehydrogenase 1 From Methicillin Resistant Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom Resolution Length = 336

Iteration: 1
 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/142 (46%), Positives = 89/142 (62%), Gaps = 4/142 (2%)
Query: 87  LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
           +KVAINGFGRIGR   R    ++   L+VV VND       +HLLKYD++ G F  +V++
Sbjct: 3   VKVAINGFGRIGRLAFRRI--QEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEV 60
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
           VD     V+GK +K  S  D  +LPW +L ID+V+E TG + D   A  HI+AGAKKV+I
Sbjct: 61  VDG-GFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 119
Query: 207 TAPAKGADIPTYVVGVNEKDYD 228
           +APA G D+ T V   N ++ D
Sbjct: 120 SAPATG-DLKTIVFNTNHQELD 140

>pdb|2VYN|A Chain A, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer Length = 331

Iteration: 1
 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 63/141 (44%), Positives = 86/141 (60%), Gaps = 4/141 (2%)
Query: 87  LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
           +KV INGFGRIGR   R    R D  +++V +ND       +++LKYDS  G F   V++
Sbjct: 3   IKVGINGFGRIGRIVFRAAQKRSD--IEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEV 60
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
            D   I V+GK I+V + RDP  L W E+G+D+V E TG+F+    A KHI AGAKKV++
Sbjct: 61  KDGHLI-VNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 119
Query: 207 TAPAKGADIPTYVVGVNEKDY 227
           T P+K  + P +V G N   Y
Sbjct: 120 TGPSKD-NTPMFVKGANFDKY 139

>pdb|3VAZ|P Chain P, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal Space Group Length = 344

Iteration: 1
 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/142 (46%), Positives = 89/142 (62%), Gaps = 4/142 (2%)
Query: 87  LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
           +KVAINGFGRIGR   R    ++   L+VV VND       +HLLKYD++ G F  +V++
Sbjct: 11  VKVAINGFGRIGRLAFR--RIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEV 68
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
           VD     V+GK +K  S  D  +LPW +L ID+V+E TG + D   A  HI+AGAKKV+I
Sbjct: 69  VDG-GFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 127
Query: 207 TAPAKGADIPTYVVGVNEKDYD 228
           +APA G D+ T V   N ++ D
Sbjct: 128 SAPATG-DLKTIVFNTNHQELD 148

>pdb|3LVF|P Chain P, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin Resistant Staphylococcus Aureus Mrsa252 At 1.7 Angstrom Resolution Length = 338

Iteration: 1
 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/142 (46%), Positives = 89/142 (62%), Gaps = 4/142 (2%)
Query: 87  LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
           +KVAINGFGRIGR   R    ++   L+VV VND       +HLLKYD++ G F  +V++
Sbjct: 5   VKVAINGFGRIGRLAFR--RIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEV 62
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
           VD     V+GK +K  S  D  +LPW +L ID+V+E TG + D   A  HI+AGAKKV+I
Sbjct: 63  VDG-GFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 121
Query: 207 TAPAKGADIPTYVVGVNEKDYD 228
           +APA G D+ T V   N ++ D
Sbjct: 122 SAPATG-DLKTIVFNTNHQELD 142

>pdb|3K73|Q Chain Q, Crystal Structure Of Phosphate Bound Holo Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252 At 2.5 Angstrom Resolution Length = 336

Iteration: 1
 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/142 (46%), Positives = 89/142 (62%), Gaps = 4/142 (2%)
Query: 87  LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
           +KVAINGFGRIGR   R    ++   L+VV VND       +HLLKYD++ G F  +V++
Sbjct: 3   VKVAINGFGRIGRLAFR--RIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEV 60
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
           VD     V+GK +K  S  D  +LPW +L ID+V+E TG + D   A  HI+AGAKKV+I
Sbjct: 61  VDG-GFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 119
Query: 207 TAPAKGADIPTYVVGVNEKDYD 228
           +APA G D+ T V   N ++ D
Sbjct: 120 SAPATG-DLKTIVFNTNHQELD 140

>pdb|1GAE|O Chain O, Comparison Of The Structures Of Wild Type And A N313t Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate Dehydrogenases: Implication For Nad Binding And Cooperativity Length = 330

Iteration: 1
 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 63/141 (44%), Positives = 86/141 (60%), Gaps = 4/141 (2%)
Query: 87  LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
           +KV INGFGRIGR   R    R D  +++V +ND       +++LKYDS  G F   V++
Sbjct: 2   IKVGINGFGRIGRIVFRAAQKRSD--IEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEV 59
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
            D   I V+GK I+V + RDP  L W E+G+D+V E TG+F+    A KHI AGAKKV++
Sbjct: 60  KDGHLI-VNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 118
Query: 207 TAPAKGADIPTYVVGVNEKDY 227
           T P+K  + P +V G N   Y
Sbjct: 119 TGPSKD-NTPMFVKGANFDKY 138

>pdb|1GAD|O Chain O, Comparison Of The Structures Of Wild Type And A N313t Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate Dehydrogenases: Implication For Nad Binding And Cooperativity Length = 330

Iteration: 1
 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 63/141 (44%), Positives = 86/141 (60%), Gaps = 4/141 (2%)
Query: 87  LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
           +KV INGFGRIGR   R    R D  +++V +ND       +++LKYDS  G F   V++
Sbjct: 2   IKVGINGFGRIGRIVFRAAQKRSD--IEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEV 59
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
            D   I V+GK I+V + RDP  L W E+G+D+V E TG+F+    A KHI AGAKKV++
Sbjct: 60  KDGHLI-VNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 118
Query: 207 TAPAKGADIPTYVVGVNEKDY 227
           T P+K  + P +V G N   Y
Sbjct: 119 TGPSKD-NTPMFVKGANFDKY 138

>pdb|1S7C|A Chain A, Crystal Structure Of Mes Buffer Bound Form Of Glyceraldehyde 3- Phosphate Dehydrogenase From Escherichia Coli Length = 331

Iteration: 1
 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 63/141 (44%), Positives = 86/141 (60%), Gaps = 4/141 (2%)
Query: 87  LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
           +KV INGFGRIGR   R    R D  +++V +ND       +++LKYDS  G F   V++
Sbjct: 3   IKVGINGFGRIGRIVFRAAQKRSD--IEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEV 60
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
            D   I V+GK I+V + RDP  L W E+G+D+V E TG+F+    A KHI AGAKKV++
Sbjct: 61  KDGHLI-VNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 119
Query: 207 TAPAKGADIPTYVVGVNEKDY 227
           T P+K  + P +V G N   Y
Sbjct: 120 TGPSKD-NTPMFVKGANFDKY 139

>pdb|1YWG|O Chain O, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase From Plasmodium Falciparum Length = 337

Iteration: 1
 Score =  114 bits (284), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 63/146 (43%), Positives = 89/146 (60%), Gaps = 5/146 (3%)
Query: 84  VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKA 142
           +A  K+ INGFGRIGR   R   GRKD  ++VV +ND    + +  +LLKYDS+ G F  
Sbjct: 1   MAVTKLGINGFGRIGRLVFRAAFGRKD--IEVVAINDPFMDLNHLCYLLKYDSVHGQFPC 58
Query: 143 DVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202
           +V   D   + +  K + V + +DP Q+PW +  +D+V E TGVF+    A  H++ GAK
Sbjct: 59  EVTHADGFLL-IGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAK 117
Query: 203 KVIITAPAKGADIPTYVVGVNEKDYD 228
           KVI++AP K  D P YV+G+N   YD
Sbjct: 118 KVIMSAPPKD-DTPIYVMGINHHQYD 142

>pdb|2B4R|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase From Plasmodium Falciparum At 2.25 Angstrom Resolution Reveals Intriguing Extra Electron Density In The Active Site Length = 345

Iteration: 1
 Score =  113 bits (283), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 62/142 (43%), Positives = 87/142 (61%), Gaps = 5/142 (3%)
Query: 88  KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKI 146
           K+ INGFGRIGR   R   GRKD  ++VV +ND    + +  +LLKYDS+ G F  +V  
Sbjct: 13  KLGINGFGRIGRLVFRAAFGRKD--IEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTH 70
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
            D   + +  K + V + +DP Q+PW +  +D+V E TGVF+    A  H++ GAKKVI+
Sbjct: 71  ADGFLL-IGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIM 129
Query: 207 TAPAKGADIPTYVVGVNEKDYD 228
           +AP K  D P YV+G+N   YD
Sbjct: 130 SAPPKD-DTPIYVMGINHHQYD 150

>pdb|4IQ8|A Chain A, Crystal Structure Of Glyceraldehyde-3-phosphate Dehydrogenase 3 From Saccharomyces Cerevisiae Length = 340

Iteration: 1
 Score =  113 bits (282), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/146 (45%), Positives = 91/146 (62%), Gaps = 6/146 (4%)
Query: 87  LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKN-ASHLLKYDSLLGTFKADVK 145
           ++VAINGFGRIGR  +R    R +  ++VV +ND     + A+++ KYDS  G +  +V 
Sbjct: 10  VRVAINGFGRIGRLVMRIALSRPN--VEVVALNDPFITNDYAAYMFKYDSTHGRYAGEVS 67
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
             D++ I VDGK I     RDP  LPW    +DI I+ TGVF +   A KHI AGAKKV+
Sbjct: 68  H-DDKHIIVDGKKIATYQERDPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVV 126
Query: 206 ITAPAKGADIPTYVVGVNEKDYDHEV 231
           ITAP+  A  P +V+GVNE+ Y  ++
Sbjct: 127 ITAPSSTA--PMFVMGVNEEKYTSDL 150

>pdb|3PYM|A Chain A, Structure Of Gapdh 3 From S.Cerevisiae At 2.0 A Resolution Length = 332

Iteration: 1
 Score =  113 bits (282), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/146 (45%), Positives = 91/146 (62%), Gaps = 6/146 (4%)
Query: 87  LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKN-ASHLLKYDSLLGTFKADVK 145
           ++VAINGFGRIGR  +R    R +  ++VV +ND     + A+++ KYDS  G +  +V 
Sbjct: 2   VRVAINGFGRIGRLVMRIALSRPN--VEVVALNDPFITNDYAAYMFKYDSTHGRYAGEVS 59
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
             D++ I VDGK I     RDP  LPW    +DI I+ TGVF +   A KHI AGAKKV+
Sbjct: 60  H-DDKHIIVDGKKIATYQERDPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVV 118
Query: 206 ITAPAKGADIPTYVVGVNEKDYDHEV 231
           ITAP+  A  P +V+GVNE+ Y  ++
Sbjct: 119 ITAPSSTA--PMFVMGVNEEKYTSDL 142

>pdb|1DC4|A Chain A, Structural Analysis Of Glyceraldehyde 3-Phosphate Dehydrogenase From Escherichia Coli: Direct Evidence For Substrate Binding And Cofactor-Induced Conformational Changes Length = 330

Iteration: 1
 Score =  112 bits (279), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 63/141 (44%), Positives = 84/141 (59%), Gaps = 4/141 (2%)
Query: 87  LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
           +KV INGFGRIGR   R    R D  +++V +ND       ++ LKYDS  G F   V++
Sbjct: 2   IKVGINGFGRIGRIVFRAAQKRSD--IEIVAINDLLDADYXAYXLKYDSTHGRFDGTVEV 59
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
            D   I V+GK I+V + RDP  L W E+G+D+V E TG+F+    A KHI AGAKKV+ 
Sbjct: 60  KDGHLI-VNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVX 118
Query: 207 TAPAKGADIPTYVVGVNEKDY 227
           T P+K  + P +V G N   Y
Sbjct: 119 TGPSKD-NTPXFVKGANFDKY 138

>pdb|3E5R|O Chain O, Crystal Structure And Functional Analysis Of Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza Sativa Length = 337

Iteration: 1
 Score =  112 bits (279), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 62/150 (41%), Positives = 96/150 (64%), Gaps = 6/150 (4%)
Query: 84  VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKN-ASHLLKYDSLLGTFK- 141
           + K+K+ INGFGRIGR   R     +D  +++V VND     +  +++ KYD++ G +K 
Sbjct: 1   MGKIKIGINGFGRIGRLVARVALQSED--VELVAVNDPFITTDYMTYMFKYDTVHGQWKH 58
Query: 142 ADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201
           +D+KI D++T+ +  K + V   R+P ++PWAE G + V+E TGVF D   A  H++ GA
Sbjct: 59  SDIKIKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGA 118
Query: 202 KKVIITAPAKGADIPTYVVGVNEKDYDHEV 231
           KKV+I+AP+K  D P +V GVNE  Y  ++
Sbjct: 119 KKVVISAPSK--DAPMFVCGVNEDKYTSDI 146

>pdb|3E6A|O Chain O, Crystal Structure And Functional Analysis Of Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza Sativa Length = 336

Iteration: 1
 Score =  111 bits (278), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 62/148 (41%), Positives = 95/148 (64%), Gaps = 6/148 (4%)
Query: 86  KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKN-ASHLLKYDSLLGTFK-AD 143
           K+K+ INGFGRIGR   R     +D  +++V VND     +  +++ KYD++ G +K +D
Sbjct: 2   KIKIGINGFGRIGRLVARVALQSED--VELVAVNDPFITTDYMTYMFKYDTVHGQWKHSD 59
Query: 144 VKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKK 203
           +KI D++T+ +  K + V   R+P ++PWAE G + V+E TGVF D   A  H++ GAKK
Sbjct: 60  IKIKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKK 119
Query: 204 VIITAPAKGADIPTYVVGVNEKDYDHEV 231
           V+I+AP+K  D P +V GVNE  Y  ++
Sbjct: 120 VVISAPSK--DAPMFVCGVNEDKYTSDI 145

>pdb|1ZNQ|O Chain O, Crsytal Structure Of Human Liver Gapdh Length = 338

Iteration: 1
 Score =  106 bits (265), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 58/149 (38%), Positives = 87/149 (58%), Gaps = 6/149 (4%)
Query: 84  VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKA 142
           + K+KV +NGFGRIGR   R         +D+V +ND    +    ++ +YDS  G F  
Sbjct: 4   MGKVKVGVNGFGRIGRLVTRA--AFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHG 61
Query: 143 DVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202
            VK  +N  + ++G  I +   RDP ++ W + G + V+E TGVF     AG H+Q GAK
Sbjct: 62  TVK-AENGKLVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAK 120
Query: 203 KVIITAPAKGADIPTYVVGVNEKDYDHEV 231
           +VII+AP+  AD P +V+GVN + YD+ +
Sbjct: 121 RVIISAPS--ADAPMFVMGVNHEKYDNSL 147

>pdb|1U8F|O Chain O, Crystal Structure Of Human Placental Glyceraldehyde-3- Phosphate Dehydrogenase At 1.75 Resolution Length = 335

Iteration: 1
 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 58/149 (38%), Positives = 87/149 (58%), Gaps = 6/149 (4%)
Query: 84  VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKA 142
           + K+KV +NGFGRIGR   R         +D+V +ND    +    ++ +YDS  G F  
Sbjct: 1   MGKVKVGVNGFGRIGRLVTRA--AFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHG 58
Query: 143 DVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202
            VK  +N  + ++G  I +   RDP ++ W + G + V+E TGVF     AG H+Q GAK
Sbjct: 59  TVK-AENGKLVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAK 117
Query: 203 KVIITAPAKGADIPTYVVGVNEKDYDHEV 231
           +VII+AP+  AD P +V+GVN + YD+ +
Sbjct: 118 RVIISAPS--ADAPMFVMGVNHEKYDNSL 144

>pdb|1J0X|O Chain O, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3- Phosphate Dehydrogenase (Gapdh) Length = 332

Iteration: 1
 Score =  104 bits (260), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 58/146 (39%), Positives = 85/146 (58%), Gaps = 6/146 (4%)
Query: 87  LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVK 145
           +KV +NGFGRIGR   R         +DVV +ND    +    ++ +YDS  G F   VK
Sbjct: 1   VKVGVNGFGRIGRLVTRA--AFNSGKVDVVAINDPFIDLHYMVYMFQYDSTHGKFHGTVK 58
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
             +N  + ++GK I +   RDP  + W + G + V+E TGVF     AG H++ GAK+VI
Sbjct: 59  -AENGKLVINGKAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVI 117
Query: 206 ITAPAKGADIPTYVVGVNEKDYDHEV 231
           I+AP+  AD P +V+GVN + YD+ +
Sbjct: 118 ISAPS--ADAPMFVMGVNHEKYDNSL 141

>pdb|1IHX|A Chain A, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate Dehydrogenase Complexes: A Case Of Asymmetry Length = 333

Iteration: 1
 Score =  103 bits (258), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 61/145 (42%), Positives = 84/145 (57%), Gaps = 7/145 (4%)
Query: 88  KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKI 146
           K+ INGFGRIGR  LR      +    VV VND    ++   ++ KYDS  G FK +VK+
Sbjct: 2   KIGINGFGRIGRLVLRT---ALEMGAQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKV 58
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
            D   + VDGK I V +   P  +PW++ G + ++E TGVF     A  H + GAKKVII
Sbjct: 59  EDGALV-VDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVII 117
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEV 231
           +AP+  AD P +V GVN + Y  ++
Sbjct: 118 SAPS--ADAPMFVCGVNLEKYSKDM 140

>pdb|2X0N|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase From Trypanosoma Brucei Determined From Laue Data Length = 359

Iteration: 1
 Score =  103 bits (257), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 63/162 (38%), Positives = 97/162 (59%), Gaps = 16/162 (9%)
Query: 87  LKVAINGFGRIGRNFLR--CWHGRKDSPLDVVVVND-SGGVKNASHLLKYDSLLGTFKAD 143
           +KV INGFGRIGR   +  C  G   + +DVV V D +   +  ++ +KYDS+ G FK  
Sbjct: 3   IKVGINGFGRIGRMVFQALCDDGLLGNEIDVVAVVDMNTDARYFAYQMKYDSVHGKFKHS 62
Query: 144 VK-------IVDNETISVDG-KLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGK 195
           V        +  ++T+ V+G +++ V + R+P  LPW +LG++ VIE TG+F     A  
Sbjct: 63  VSTTKSKPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTVKSAAEG 122
Query: 196 HIQAGAKKVIITAPAKGADIPTYVVGVNEKDYD----HEVAN 233
           H++ GA+KV+I+APA G    T+V+GVN  +Y+    H V+N
Sbjct: 123 HLRGGARKVVISAPASGG-AKTFVMGVNHNNYNPREQHVVSN 163

>pdb|1GYP|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase From Leishmania Mexicana: Implications For Structure-Based Drug Design And A New Position For The Inorganic Phosphate Binding Site Length = 358

Iteration: 1
 Score =  103 bits (256), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/164 (41%), Positives = 96/164 (58%), Gaps = 16/164 (9%)
Query: 85  AKLKVAINGFGRIGRNFLR--CWHGRKDSPLDVVVVND-SGGVKNASHLLKYDSLLGTFK 141
           A +KV INGFGRIGR   +  C  G   + +DVV V D S   +  ++ +K+D++ G  K
Sbjct: 1   APIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKHDTVHGRPK 60
Query: 142 ADVKIVDN-------ETISVDGKLIKVV-SNRDPLQLPWAELGIDIVIEGTGVFVDGPGA 193
             V+ V +       + + V+G  IK V + R+P  LPW +LG+D VIE TG+F D   A
Sbjct: 61  YTVEAVKSSPSVETADVLVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLKA 120
Query: 194 GKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYD----HEVAN 233
             HI+ GAKKV+I+APA G    T V+GVN+ +Y     H V+N
Sbjct: 121 EGHIKGGAKKVVISAPASGG-AKTIVMGVNQHEYSPASHHVVSN 163

>pdb|1A7K|A Chain A, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A Monoclinic Crystal Form Length = 360

Iteration: 1
 Score =  103 bits (256), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/164 (41%), Positives = 96/164 (58%), Gaps = 16/164 (9%)
Query: 85  AKLKVAINGFGRIGRNFLR--CWHGRKDSPLDVVVVND-SGGVKNASHLLKYDSLLGTFK 141
           A +KV INGFGRIGR   +  C  G   + +DVV V D S   +  ++ +K+D++ G  K
Sbjct: 1   APIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKHDTVHGRPK 60
Query: 142 ADVKIVDN-------ETISVDGKLIKVV-SNRDPLQLPWAELGIDIVIEGTGVFVDGPGA 193
             V+ V +       + + V+G  IK V + R+P  LPW +LG+D VIE TG+F D   A
Sbjct: 61  YTVEAVKSSPSVETADVLVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLKA 120
Query: 194 GKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYD----HEVAN 233
             HI+ GAKKV+I+APA G    T V+GVN+ +Y     H V+N
Sbjct: 121 EGHIKGGAKKVVISAPASGG-AKTIVMGVNQHEYSPASHHVVSN 163

>pdb|1GPD|G Chain G, Studies Of Asymmetry In The Three-Dimensional Structure Of Lobster D- Glyceraldehyde-3-Phosphate Dehydrogenase Length = 334

Iteration: 1
 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/145 (41%), Positives = 83/145 (57%), Gaps = 7/145 (4%)
Query: 88  KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKI 146
           K+ INGFGRIGR  LR           VV VND    ++   ++ KYDS  G FK +VK+
Sbjct: 3   KIGINGFGRIGRLVLR---AALSCGAQVVAVNDPFIALEYMVYMFKYDSTHGVFKGEVKM 59
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
            D   + VDGK I V +   P  +PW++ G + ++E TGVF     A  H + GAKKV+I
Sbjct: 60  EDGALV-VDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVVI 118
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEV 231
           +AP+  AD P +V GVN + Y  ++
Sbjct: 119 SAPS--ADAPMFVCGVNLEKYSKDM 141

>pdb|4GPD|1 Chain 1, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate Dehydrogenase At 3.0 Angstroms Resolution Length = 333

Iteration: 1
 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/145 (41%), Positives = 83/145 (57%), Gaps = 7/145 (4%)
Query: 88  KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKI 146
           K+ INGFGRIGR  LR           VV VND    ++   ++ KYDS  G FK +VK+
Sbjct: 2   KIGINGFGRIGRLVLR---AALSCGAQVVAVNDPFIALEYMVYMFKYDSTHGVFKGEVKM 58
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
            D   + VDGK I V +   P  +PW++ G + ++E TGVF     A  H + GAKKV+I
Sbjct: 59  EDGALV-VDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVVI 117
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEV 231
           +AP+  AD P +V GVN + Y  ++
Sbjct: 118 SAPS--ADAPMFVCGVNLEKYSKDM 140

>pdb|1SZJ|G Chain G, Structure Of Holo-Glyceraldehyde-3-Phosphate-Dehydrogenase From Palinurus Versicolor Refined 2.0 Angstrom Resolution Length = 333

Iteration: 1
 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/145 (42%), Positives = 83/145 (57%), Gaps = 7/145 (4%)
Query: 88  KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKI 146
           K+ INGFGRIGR  LR      +    VV VND    ++   ++ KYDS  G FK +VK 
Sbjct: 2   KIGINGFGRIGRLVLR---AALEMGAQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKA 58
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
            D   + VDGK I V +   P  +PW++ G + ++E TGVF     A  H + GAKKVII
Sbjct: 59  EDGALV-VDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVII 117
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEV 231
           +AP+  AD P +V GVN + Y  ++
Sbjct: 118 SAPS--ADAPMFVCGVNLEKYSKDM 140

>pdb|1DSS|G Chain G, Structure Of Active-Site Carboxymethylated D-Glyceraldehyde-3- Phosphate Dehydrogenase From Palinurus Versicolor Length = 333

Iteration: 1
 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/145 (42%), Positives = 83/145 (57%), Gaps = 7/145 (4%)
Query: 88  KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKI 146
           K+ INGFGRIGR  LR      +    VV VND    ++   ++ KYDS  G FK +VK 
Sbjct: 2   KIGINGFGRIGRLVLRA---ALEMGAQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKA 58
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
            D   + VDGK I V +   P  +PW++ G + ++E TGVF     A  H + GAKKVII
Sbjct: 59  EDGALV-VDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVII 117
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEV 231
           +AP+  AD P +V GVN + Y  ++
Sbjct: 118 SAPS--ADAPMFVCGVNLEKYSKDM 140

>pdb|1K3T|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase From Trypanosoma Cruzi Complexed With Chalepin, A Coumarin Derivative Inhibitor Length = 359

Iteration: 1
 Score =  102 bits (253), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 97/162 (59%), Gaps = 16/162 (9%)
Query: 87  LKVAINGFGRIGRNFLR--CWHGRKDSPLDVVVVND-SGGVKNASHLLKYDSLLGTFKAD 143
           +KV INGFGRIGR   +  C  G   + +DVV V D +   +  ++ ++YD++ G FK +
Sbjct: 3   IKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYE 62
Query: 144 V-------KIVDNETISVDG-KLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGK 195
           V        +  ++T+ V+G +++ V + R+P  LPW +LG++ VIE TG+F     A  
Sbjct: 63  VTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEG 122
Query: 196 HIQAGAKKVIITAPAKGADIPTYVVGVNEKDYD----HEVAN 233
           H++ GA+KV+I+APA G    T V+GVN  +Y+    H V+N
Sbjct: 123 HLRGGARKVVISAPASGG-AKTLVMGVNHHEYNPSEHHVVSN 163

>pdb|3DMT|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase From Trypanosoma Cruzi In Complex With The Irreversible Iodoacetate Inhibitor Length = 359

Iteration: 1
 Score =  102 bits (253), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 97/162 (59%), Gaps = 16/162 (9%)
Query: 87  LKVAINGFGRIGRNFLR--CWHGRKDSPLDVVVVND-SGGVKNASHLLKYDSLLGTFKAD 143
           +KV INGFGRIGR   +  C  G   + +DVV V D +   +  ++ ++YD++ G FK +
Sbjct: 3   IKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYE 62
Query: 144 V-------KIVDNETISVDG-KLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGK 195
           V        +  ++T+ V+G +++ V + R+P  LPW +LG++ VIE TG+F     A  
Sbjct: 63  VTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEG 122
Query: 196 HIQAGAKKVIITAPAKGADIPTYVVGVNEKDYD----HEVAN 233
           H++ GA+KV+I+APA G    T V+GVN  +Y+    H V+N
Sbjct: 123 HLRGGARKVVISAPASGG-AKTLVMGVNHHEYNPSEHHVVSN 163

>pdb|3GPD|R Chain R, Twinning In Crystals Of Human Skeletal Muscle D-Glyceraldehyde-3- Phosphate Dehydrogenase Length = 334

Iteration: 1
 Score = 98.6 bits (244), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/143 (38%), Positives = 81/143 (56%), Gaps = 6/143 (4%)
Query: 86  KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADV 144
           K+KV ++GFGRIGR   R         +D+V +ND    +    ++ +YDS  G F   V
Sbjct: 2   KVKVGVDGFGRIGRLVTRA--AFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTV 59
Query: 145 KIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKV 204
           K  D + + +DGK I +   RDP  + W + G   V+E TGVF     AG H++ GAK++
Sbjct: 60  KAEDGKLV-IDGKAITIFQERDPENIKWGDAGTAYVVESTGVFTTMEKAGAHLKGGAKRI 118
Query: 205 IITAPAKGADIPTYVVGVNEKDY 227
           +I+AP+  AD P +V+GVN   Y
Sbjct: 119 VISAPS--ADAPMFVMGVNHFKY 139

>pdb|2X5K|O Chain O, Structure Of An Active Site Mutant Of The D-Erythrose-4-Phosphate Dehydrogenase From E. Coli Length = 339

Iteration: 1
 Score = 98.2 bits (243), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 56/140 (40%), Positives = 82/140 (58%), Gaps = 4/140 (2%)
Query: 87  LKVAINGFGRIGRNFLRCWH--GRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADV 144
           ++VAINGFGRIGRN +R  +  GR+ + + VV +N+       +HLLKYD+  G F  +V
Sbjct: 3   VRVAINGFGRIGRNVVRALYESGRR-AEITVVAINELADAAGMAHLLKYDTSHGRFAWEV 61
Query: 145 KIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKV 204
           +  + + + V    I+V+  R    LPW ELG+D+V++ TGV+        HI AGAKKV
Sbjct: 62  R-QERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKV 120
Query: 205 IITAPAKGADIPTYVVGVNE 224
           + + P       T V GVN+
Sbjct: 121 LFSHPGSNDLDATVVYGVNQ 140

>pdb|2VYN|D Chain D, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer Length = 334

Iteration: 1
 Score = 98.2 bits (243), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 59/143 (41%), Positives = 84/143 (58%), Gaps = 7/143 (4%)
Query: 87  LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVK 145
           +KV INGFGRIGR  LR      +  + VV VND     +   ++ KYDS  G +K  V+
Sbjct: 2   VKVGINGFGRIGRLVLRVC---MEKGVRVVAVNDPFIDPEYMVYMFKYDSTHGRYKGTVE 58
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
              N  + VD   I V   ++P ++PW+ +G   V+E TGV++    A  HI +GA++VI
Sbjct: 59  H-KNGRLVVDNLEINVFQXKEPKEIPWSSVGNPYVVEATGVYLSIEAASGHISSGARRVI 117
Query: 206 ITAPAKGADIPTYVVGVNEKDYD 228
           +TAP+   D P  V+GVNEKDY+
Sbjct: 118 VTAPS--PDAPMLVMGVNEKDYN 138

>pdb|2XF8|A Chain A, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase From E.Coli In Complex With A Nad Cofactor Analog (3- Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate Anion Length = 338

Iteration: 1
 Score = 97.8 bits (242), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 56/140 (40%), Positives = 82/140 (58%), Gaps = 4/140 (2%)
Query: 87  LKVAINGFGRIGRNFLRCWH--GRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADV 144
           ++VAINGFGRIGRN +R  +  GR+ + + VV +N+       +HLLKYD+  G F  +V
Sbjct: 2   VRVAINGFGRIGRNVVRALYESGRR-AEITVVAINELADAAGMAHLLKYDTSHGRFAWEV 60
Query: 145 KIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKV 204
           +  + + + V    I+V+  R    LPW ELG+D+V++ TGV+        HI AGAKKV
Sbjct: 61  R-QERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKV 119
Query: 205 IITAPAKGADIPTYVVGVNE 224
           + + P       T V GVN+
Sbjct: 120 LFSHPGSNDLDATVVYGVNQ 139

>pdb|2X5J|O Chain O, Crystal Structure Of The Apoform Of The D-Erythrose-4-Phosphate Dehydrogenase From E. Coli Length = 339

Iteration: 1
 Score = 97.8 bits (242), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 56/140 (40%), Positives = 82/140 (58%), Gaps = 4/140 (2%)
Query: 87  LKVAINGFGRIGRNFLRCWH--GRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADV 144
           ++VAINGFGRIGRN +R  +  GR+ + + VV +N+       +HLLKYD+  G F  +V
Sbjct: 3   VRVAINGFGRIGRNVVRALYESGRR-AEITVVAINELADAAGMAHLLKYDTSHGRFAWEV 61
Query: 145 KIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKV 204
           +  + + + V    I+V+  R    LPW ELG+D+V++ TGV+        HI AGAKKV
Sbjct: 62  R-QERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKV 120
Query: 205 IITAPAKGADIPTYVVGVNE 224
           + + P       T V GVN+
Sbjct: 121 LFSHPGSNDLDATVVYGVNQ 140

>pdb|3STH|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase From Toxoplasma Gondii Length = 361

Iteration: 1
 Score = 97.4 bits (241), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 55/141 (39%), Positives = 82/141 (58%), Gaps = 5/141 (3%)
Query: 88  KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKI 146
           K+ INGFGRIGR   R    R D  ++V+ +ND    +    +LL+YDS+ G +  +V  
Sbjct: 25  KLGINGFGRIGRLVFRAAMERGD--VEVLAINDPFMSLDYMVYLLRYDSVHGHYPGEVSH 82
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
            D + I V GK + V + ++P  +PW + G+  + E TG+F+    A  H+  GAKKVI+
Sbjct: 83  KDGKLI-VGGKAVTVFNEKEPTAIPWGQAGVHYICESTGIFLTKEKAQAHLTNGAKKVIM 141
Query: 207 TAPAKGADIPTYVVGVNEKDY 227
           +AP K  D P +V+GVN   Y
Sbjct: 142 SAPPKD-DTPMFVMGVNNDQY 161

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	248
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	3e-85
2d2i_A	380	Glyceraldehyde 3-phosphate dehydrogenase; rossmann	6e-85
1rm4_O	337	Glyceraldehyde 3-phosphate dehydrogenase A; rossma	1e-83
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	1e-79
4dib_A	345	GAPDH, glyceraldehyde 3-phosphate dehydrogenase; n	1e-79
3doc_A	335	Glyceraldehyde 3-phosphate dehydrogenase; ssgcid,	1e-79
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	5e-79
2ep7_A	342	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; o	6e-79
2g82_O	331	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G	2e-78
2x5j_O	339	E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid	8e-76
1obf_O	335	Glyceraldehyde 3-phosphate dehydrogenase; glycolyt	1e-75
3hja_A	356	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; n	9e-74
3lvf_P	338	GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase	4e-66
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	8e-61
1gad_O	330	D-glyceraldehyde-3-phosphate dehydrogenase; oxidor	6e-60
3h9e_O	346	Glyceraldehyde-3-phosphate dehydrogenase, testis-;	1e-58
3ids_C	359	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, g	3e-58
2b4r_O	345	Glyceraldehyde-3-phosphate dehydrogenase; SGPP, st	3e-58
3pym_A	332	GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase	2e-57
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	3e-57
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	3e-56
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	3e-37
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	2e-36
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	2e-33
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	8e-24

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A* Length = 339

 Score =  256 bits (656), Expect = 3e-85
 Identities = 86/150 (57%), Positives = 115/150 (76%), Gaps = 1/150 (0%)

Query: 86  KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
            ++VAINGFGRIGRNFLRCW GR+++ L+VV +N++   + A+HLL+YDS+LG F AD+ 
Sbjct: 2   TIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADIS 61

Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
             D  +I+V+GK +K+V +R+PL LPW E  ID+VIE TGVFV   GA KHIQAGAKKV+
Sbjct: 62  -YDENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVL 120

Query: 206 ITAPAKGADIPTYVVGVNEKDYDHEVANIV 235
           ITAP KG  + TYV+GVN+ +Y HE   ++
Sbjct: 121 ITAPGKGEGVGTYVIGVNDSEYRHEDFAVI 150

>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A Length = 380

 Score =  257 bits (658), Expect = 6e-85
 Identities = 85/150 (56%), Positives = 114/150 (76%), Gaps = 1/150 (0%)

Query: 86  KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
            ++VAINGFGRIGRNFLRCW GR+++ L+VV +N++   + A+HLL+YDS+LG F AD+ 
Sbjct: 2   TIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADIS 61

Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
             D  +I+V+GK +K+V +R+PL LPW E  ID+VIE TGVFV   GA KHIQAGAKKV+
Sbjct: 62  -YDENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVL 120

Query: 206 ITAPAKGADIPTYVVGVNEKDYDHEVANIV 235
           ITAP K   + TYV+GVN+ +Y HE   ++
Sbjct: 121 ITAPGKAEGVGTYVIGVNDSEYRHEDFAVI 150

>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O* Length = 337

 Score =  252 bits (646), Expect = 1e-83
 Identities = 113/145 (77%), Positives = 127/145 (87%), Gaps = 1/145 (0%)

Query: 86  KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
           KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVV+ND+GGVK ASHLLKYDS+LGTF ADVK
Sbjct: 1   KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVK 60

Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
              +  ISVDGK+IKVVS+R+P+ LPW ++GID+VIEGTGVFVD  GAGKH+QAGAKKV+
Sbjct: 61  TAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVL 120

Query: 206 ITAPAKGADIPTYVVGVNEKDYDHE 230
           ITAP KG   PTYVVGVNE+ Y H 
Sbjct: 121 ITAPGKGDI-PTYVVGVNEEGYTHA 144

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 Length = 332

 Score =  242 bits (619), Expect = 1e-79
 Identities = 75/143 (52%), Positives = 93/143 (65%), Gaps = 2/143 (1%)

Query: 88  KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIV 147
           +VAINGFGRIGR   R  + RK+  ++VV +ND    K  +HLLKYDS+   F   V+  
Sbjct: 2   RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVE-Y 60

Query: 148 DNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207
              ++ VDGK IKV +  DP +LPW +LG+D VIE TGVF +   A  H+QAGAKKVIIT
Sbjct: 61  TENSLIVDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIIT 120

Query: 208 APAKGADIPTYVVGVNEKDYDHE 230
           APAKG DI T V+G NE     E
Sbjct: 121 APAKGEDI-TVVIGCNEDQLKPE 142

>4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural genomics, national institute of allergy AN infectious diseases; 2.55A {Bacillus anthracis} Length = 345

 Score =  242 bits (619), Expect = 1e-79
 Identities = 66/153 (43%), Positives = 95/153 (62%), Gaps = 4/153 (2%)

Query: 83  TVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKA 142
           + A  +VAINGFGRIGR   R          ++V +N S   +  +HL+KYD++ G F  
Sbjct: 1   SNAMTRVAINGFGRIGRMVFRQAIKESA--FEIVAINASYPSETLAHLIKYDTVHGKFDG 58

Query: 143 DVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202
            V+    + + VDGK+I++++NRDP +LPW +LG+++VIE TG F     A  H++AGAK
Sbjct: 59  TVE-AFEDHLLVDGKMIRLLNNRDPKELPWTDLGVEVVIEATGKFNSKEKAILHVEAGAK 117

Query: 203 KVIITAPAKGADIPTYVVGVNEKDYDHEVANIV 235
           KVI+TAP K  D+ T VVGVNE   D     ++
Sbjct: 118 KVILTAPGKNEDV-TIVVGVNEDQLDITKHTVI 149

>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural genomics, PSI, protein structure initiative; HET: NAD; 2.40A {Brucella melitensis biovar ABORTUS2308} PDB: 3l0d_A* Length = 335

 Score =  241 bits (618), Expect = 1e-79
 Identities = 67/145 (46%), Positives = 92/145 (63%), Gaps = 2/145 (1%)

Query: 86  KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
            ++VAINGFGRIGRN LR       + + VV +ND G V+  +HLL+YDS+ G F  +V+
Sbjct: 2   AVRVAINGFGRIGRNILRAIVESGRTDIQVVAINDLGPVETNAHLLRYDSVHGRFPKEVE 61

Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
            V  +TI V    IKV + R+P +LPW E  +DI +E TG+F     A  H++AGAK+VI
Sbjct: 62  -VAGDTIDVGYGPIKVHAVRNPAELPWKEENVDIALECTGIFTSRDKAALHLEAGAKRVI 120

Query: 206 ITAPAKGADIPTYVVGVNEKDYDHE 230
           ++APA GAD+ T V GVN      +
Sbjct: 121 VSAPADGADL-TVVYGVNNDKLTKD 144

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O* Length = 334

 Score =  240 bits (614), Expect = 5e-79
 Identities = 72/149 (48%), Positives = 94/149 (63%), Gaps = 4/149 (2%)

Query: 87  LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
           +KV INGFGRIGRN  R      D  ++VV VND       +HLLKYDS+ G   A+V  
Sbjct: 2   VKVGINGFGRIGRNVFRAALKNPD--IEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVS- 58

Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
           V+   + V+GK I V + RDP  L W E+G+DIV+E TG F     A KH++AGAKKVII
Sbjct: 59  VNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118

Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIV 235
           +APAK  D  T V+GVN+  YD +  +++
Sbjct: 119 SAPAKNED-ITIVMGVNQDKYDPKAHHVI 146

>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase, structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex aeolicus} Length = 342

 Score =  240 bits (614), Expect = 6e-79
 Identities = 80/150 (53%), Positives = 107/150 (71%), Gaps = 4/150 (2%)

Query: 86  KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
            +KV INGFGRIGR+F R   GR++  +++V +ND    K+ +HLLKYDS+ G FK  V+
Sbjct: 2   AIKVGINGFGRIGRSFFRASWGREE--IEIVAINDLTDAKHLAHLLKYDSVHGIFKGSVE 59

Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
              +++I VDGK IKV + +DP Q+PW +LG+D+VIE TGVF D   A KH+Q GAKKVI
Sbjct: 60  -AKDDSIVVDGKEIKVFAQKDPSQIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVI 118

Query: 206 ITAPAKGADIPTYVVGVNEKDYDHEVANIV 235
           ITAPAK  D  T V+GVNE+ Y+ +  NI+
Sbjct: 119 ITAPAKNPD-ITVVLGVNEEKYNPKEHNII 147

>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A* Length = 331

 Score =  238 bits (609), Expect = 2e-78
 Identities = 73/149 (48%), Positives = 97/149 (65%), Gaps = 5/149 (3%)

Query: 87  LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
           +KV INGFGRIGR   R  H R    ++V ++ND    K  +HLLKYDS+   F  +V  
Sbjct: 1   MKVGINGFGRIGRQVFRILHSRG---VEVALINDLTDNKTLAHLLKYDSIYHRFPGEVA- 56

Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
            D++ + VDGK I+  + +DP ++PWAE G+ +VIE TGVF D   A  H++ GAKKVII
Sbjct: 57  YDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVII 116

Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIV 235
           TAPAKG DI T V+GVN + YD    +I+
Sbjct: 117 TAPAKGEDI-TIVMGVNHEAYDPSRHHII 144

>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O* Length = 339

 Score =  231 bits (593), Expect = 8e-76
 Identities = 55/146 (37%), Positives = 81/146 (55%), Gaps = 2/146 (1%)

Query: 86  KLKVAINGFGRIGRNFLRCWHGR-KDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADV 144
            ++VAINGFGRIGRN +R  +   + + + VV +N+       +HLLKYD+  G F  +V
Sbjct: 2   TVRVAINGFGRIGRNVVRALYESGRRAEITVVAINELADAAGMAHLLKYDTSHGRFAWEV 61

Query: 145 KIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKV 204
           +  + + + V    I+V+  R    LPW ELG+D+V++ TGV+        HI AGAKKV
Sbjct: 62  R-QERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKV 120

Query: 205 IITAPAKGADIPTYVVGVNEKDYDHE 230
           + + P       T V GVN+     E
Sbjct: 121 LFSHPGSNDLDATVVYGVNQDQLRAE 146

>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway, oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A {Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB: 3gnq_A* Length = 335

 Score =  231 bits (593), Expect = 1e-75
 Identities = 64/145 (44%), Positives = 86/145 (59%), Gaps = 2/145 (1%)

Query: 87  LKVAINGFGRIGRNFLRC-WHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
           ++VAING+GRIGRN LR  + G K   +++V +ND G  K  +HL +YD+  G F   V 
Sbjct: 2   IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVS 61

Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
            V+   + V+G  I+V +NR+P QLPW  L +D+V+E TG F     AG HI+ GAKKVI
Sbjct: 62  -VNGSYMVVNGDKIRVDANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVI 120

Query: 206 ITAPAKGADIPTYVVGVNEKDYDHE 230
           I+AP       T V GVN       
Sbjct: 121 ISAPGGADVDATVVYGVNHGTLKST 145

>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid, decode, UW, SBRI, LYME disease, non-hodgkin lymphomas, cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31} Length = 356

 Score =  227 bits (581), Expect = 9e-74
 Identities = 71/163 (43%), Positives = 97/163 (59%), Gaps = 10/163 (6%)

Query: 73  AAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLK 132
             G++  + +    +K+AINGFGRIGRN  +    R    +D+V +ND    K  +HLLK
Sbjct: 8   HMGTLEAQTQGPGSMKLAINGFGRIGRNVFKIAFERG---IDIVAINDLTDPKTLAHLLK 64

Query: 133 YDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGP- 191
           YDS  G +   V+   +  I VDG+ IK+++ RDP  LPWA+LGID+VIE TGVF     
Sbjct: 65  YDSTFGVYNKKVE-SRDGAIVVDGREIKIIAERDPKNLPWAKLGIDVVIESTGVFSSATS 123

Query: 192 ---GAGKHI-QAGAKKVIITAPAKGADIPTYVVGVNEKDYDHE 230
              G   H+  AGAKKVI+T PAK     T V+GVN+ D + +
Sbjct: 124 DKGGYLDHVNHAGAKKVILTVPAKDEI-KTIVLGVNDHDINSD 165

>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1; oxidoreductase, glycolysis, rossmann fold; HET: NAD; 1.70A {Staphylococcus aureus} PDB: 3l6o_Q 3k73_Q 3lc2_O* 3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q* 3ksz_O* Length = 338

 Score =  207 bits (529), Expect = 4e-66
 Identities = 64/144 (44%), Positives = 85/144 (59%), Gaps = 4/144 (2%)

Query: 87  LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
           +KVAINGFGRIGR   R     +   L+VV VND       +HLLKYD++ G F  +V+ 
Sbjct: 5   VKVAINGFGRIGRLAFRRIQEVEG--LEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVE- 61

Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
           V +    V+GK +K  S  D  +LPW +L ID+V+E TG + D   A  HI+AGAKKV+I
Sbjct: 62  VVDGGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 121

Query: 207 TAPAKGADIPTYVVGVNEKDYDHE 230
           +APA G    T V   N ++ D  
Sbjct: 122 SAPATGDL-KTIVFNTNHQELDGS 144

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* Length = 354

 Score =  194 bits (495), Expect = 8e-61
 Identities = 65/157 (41%), Positives = 92/157 (58%), Gaps = 5/157 (3%)

Query: 80  KKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLG 138
           ++    +  + INGFGRIGR  LR    R D  + VV +ND    V+  ++LLKYDS+ G
Sbjct: 11  RENLYFQGTLGINGFGRIGRLVLRACMERND--ITVVAINDPFMDVEYMAYLLKYDSVHG 68

Query: 139 TFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQ 198
            F   V+ V  + + ++GK++KV   +DP ++PW   G  IV E TGVF     A  H++
Sbjct: 69  NFNGTVE-VSGKDLCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLK 127

Query: 199 AGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIV 235
            GAKKVII+AP K    P YV+GVN  +YD    N++
Sbjct: 128 GGAKKVIISAPPKDNV-PMYVMGVNNTEYDPSKFNVI 163

>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A* Length = 330

 Score =  191 bits (487), Expect = 6e-60
 Identities = 62/142 (43%), Positives = 85/142 (59%), Gaps = 4/142 (2%)

Query: 87  LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
           +KV INGFGRIGR   R    R D  +++V +ND       +++LKYDS  G F   V+ 
Sbjct: 2   IKVGINGFGRIGRIVFRAAQKRSD--IEIVAINDLLDADYMAYMLKYDSTHGRFDGTVE- 58

Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
           V +  + V+GK I+V + RDP  L W E+G+D+V E TG+F+    A KHI AGAKKV++
Sbjct: 59  VKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 118

Query: 207 TAPAKGADIPTYVVGVNEKDYD 228
           T P+K    P +V G N   Y 
Sbjct: 119 TGPSKDNT-PMFVKGANFDKYA 139

>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D* Length = 346

 Score =  188 bits (479), Expect = 1e-58
 Identities = 62/151 (41%), Positives = 86/151 (56%), Gaps = 7/151 (4%)

Query: 86  KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADV 144
           +L V INGFGRIGR  LR    +    + VV VND     +   ++ KYDS  G +K  V
Sbjct: 7   ELTVGINGFGRIGRLVLRACMEKG---VKVVAVNDPFIDPEYMVYMFKYDSTHGRYKGSV 63

Query: 145 KIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKV 204
           +   N  + VD   I V   ++P Q+PW  +G   V+E TGV++    A  HI AGA++V
Sbjct: 64  E-FRNGQLVVDNHEISVYQCKEPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQRV 122

Query: 205 IITAPAKGADIPTYVVGVNEKDYDHEVANIV 235
           +I+AP+   D P +V+GVNE DY+    NIV
Sbjct: 123 VISAPSP--DAPMFVMGVNENDYNPGSMNIV 151

>3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso; irreversible inhibitor, protein-ligand complex,X-RAY, glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A* 1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A* Length = 359

 Score =  187 bits (478), Expect = 3e-58
 Identities = 59/160 (36%), Positives = 91/160 (56%), Gaps = 12/160 (7%)

Query: 87  LKVAINGFGRIGRNFLR--CWHGRKDSPLDVVVVND-SGGVKNASHLLKYDSLLGTFKAD 143
           +KV INGFGRIGR   +  C  G   + +DVV V D +   +  ++ ++YD++ G FK +
Sbjct: 3   IKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYE 62

Query: 144 VKIV-------DNETISVDGKLIKVVSN-RDPLQLPWAELGIDIVIEGTGVFVDGPGAGK 195
           V           ++T+ V+G  I  V   R+P  LPW +LG++ VIE TG+F     A  
Sbjct: 63  VTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEG 122

Query: 196 HIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIV 235
           H++ GA+KV+I+APA      T V+GVN  +Y+    ++V
Sbjct: 123 HLRGGARKVVISAPAS-GGAKTLVMGVNHHEYNPSEHHVV 161

>2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural genomics, PSI, structural genomi pathogenic protozoa consortium; HET: NAD AES; 2.25A {Plasmodium falciparum} SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O* Length = 345

 Score =  187 bits (477), Expect = 3e-58
 Identities = 61/150 (40%), Positives = 88/150 (58%), Gaps = 5/150 (3%)

Query: 80  KKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLG 138
               +A  K+ INGFGRIGR   R   GRKD  ++VV +ND    + +  +LLKYDS+ G
Sbjct: 5   HHHHMAATKLGINGFGRIGRLVFRAAFGRKD--IEVVAINDPFMDLNHLCYLLKYDSVHG 62

Query: 139 TFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQ 198
            F  +V    +  + +  K + V + +DP Q+PW +  +D+V E TGVF+    A  H++
Sbjct: 63  QFPCEVT-HADGFLLIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLK 121

Query: 199 AGAKKVIITAPAKGADIPTYVVGVNEKDYD 228
            GAKKVI++AP K    P YV+G+N   YD
Sbjct: 122 GGAKKVIMSAPPKDDT-PIYVMGINHHQYD 150

>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding rossmann-fold domain, alpha and beta protein, oxidoreductase; HET: NAD; 2.00A {Saccharomyces cerevisiae} PDB: 2i5p_O* Length = 332

 Score =  185 bits (471), Expect = 2e-57
 Identities = 67/150 (44%), Positives = 90/150 (60%), Gaps = 7/150 (4%)

Query: 87  LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVK 145
           ++VAINGFGRIGR  +R    R +  ++VV +ND       A+++ KYDS  G +  +V 
Sbjct: 2   VRVAINGFGRIGRLVMRIALSRPN--VEVVALNDPFITNDYAAYMFKYDSTHGRYAGEVS 59

Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
             D++ I VDGK I     RDP  LPW    +DI I+ TGVF +   A KHI AGAKKV+
Sbjct: 60  -HDDKHIIVDGKKIATYQERDPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVV 118

Query: 206 ITAPAKGADIPTYVVGVNEKDYDHEVANIV 235
           ITAP+     P +V+GVNE+ Y  +   IV
Sbjct: 119 ITAPSS--TAPMFVMGVNEEKYTSD-LKIV 145

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O Length = 337

 Score =  184 bits (469), Expect = 3e-57
 Identities = 64/153 (41%), Positives = 96/153 (62%), Gaps = 7/153 (4%)

Query: 85  AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFK-A 142
            K+K+ INGFGRIGR   R     +D  +++V VND        +++ KYD++ G +K +
Sbjct: 2   GKIKIGINGFGRIGRLVARVALQSED--VELVAVNDPFITTDYMTYMFKYDTVHGQWKHS 59

Query: 143 DVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202
           D+KI D++T+ +  K + V   R+P ++PWAE G + V+E TGVF D   A  H++ GAK
Sbjct: 60  DIKIKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAK 119

Query: 203 KVIITAPAKGADIPTYVVGVNEKDYDHEVANIV 235
           KV+I+AP+K  D P +V GVNE  Y  +  +IV
Sbjct: 120 KVVISAPSK--DAPMFVCGVNEDKYTSD-IDIV 149

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 Length = 335

 Score =  181 bits (462), Expect = 3e-56
 Identities = 58/152 (38%), Positives = 87/152 (57%), Gaps = 7/152 (4%)

Query: 85  AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKAD 143
            K+KV +NGFGRIGR   R         +D+V +ND    +    ++ +YDS  G F   
Sbjct: 2   GKVKVGVNGFGRIGRLVTRAAFNSGK--VDIVAINDPFIDLNYMVYMFQYDSTHGKFHGT 59

Query: 144 VKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKK 203
           VK  +N  + ++G  I +   RDP ++ W + G + V+E TGVF     AG H+Q GAK+
Sbjct: 60  VK-AENGKLVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKR 118

Query: 204 VIITAPAKGADIPTYVVGVNEKDYDHEVANIV 235
           VII+AP+   D P +V+GVN + YD+ +  I+
Sbjct: 119 VIISAPSA--DAPMFVMGVNHEKYDNSL-KII 147

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 Length = 334

 Score =  132 bits (334), Expect = 3e-37
 Identities = 21/145 (14%), Positives = 50/145 (34%), Gaps = 13/145 (8%)

Query: 86  KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
           K+KV +NG+G IG+        + D  ++++ +  +      ++  K   +     ++  
Sbjct: 2   KVKVGVNGYGTIGKRVAYAVTKQDD--MELIGITKTK-PDFEAYRAKELGIPVYAASEEF 58

Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
           I   E    +              L      +DI+++ T   +       + +AG K + 
Sbjct: 59  IPRFEKEGFE----------VAGTLNDLLEKVDIIVDATPGGIGAKNKPLYEKAGVKAIF 108

Query: 206 ITAPAKGADIPTYVVGVNEKDYDHE 230
                      ++V   N +    +
Sbjct: 109 QGGEKADVAEVSFVAQANYEAALGK 133

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} Length = 343

 Score =  130 bits (329), Expect = 2e-36
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 12/144 (8%)

Query: 86  KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
             KV ING+G IG+        + D  ++V+ V  +             ++   +K  V 
Sbjct: 2   PAKVLINGYGSIGKRVADAVSMQDD--MEVIGVTKT-----KPDFEARLAVEKGYKLFVA 54

Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
           I DNE +    +   +      L +       DIV++G    +         +    K I
Sbjct: 55  IPDNERV-KLFEDAGIPVEGTILDIIE---DADIVVDGAPKKIGKQNLENIYKPHKVKAI 110

Query: 206 ITAPAKGADI-PTYVVGVNEKDYD 228
           +    K  D+   +    +     
Sbjct: 111 LQGGEKAKDVEDNFNALWSYNRCY 134

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 Length = 337

 Score =  122 bits (308), Expect = 2e-33
 Identities = 26/142 (18%), Positives = 48/142 (33%), Gaps = 15/142 (10%)

Query: 88  KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND-SGGVKNASHLLKYDSLLGTFKADVKI 146
            VAING+G +G+        + D  + V+ V+      +    L K   L       VK+
Sbjct: 3   AVAINGYGTVGKRVADAIAQQDD--MKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKL 60

Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
            +   I V G +  ++   D            IVI+ T   +       + + G K +  
Sbjct: 61  FEKAGIEVAGTVDDMLDEAD------------IVIDCTPEGIGAKNLKMYKEKGIKAIFQ 108

Query: 207 TAPAKGADIPTYVVGVNEKDYD 228
                     ++    N ++  
Sbjct: 109 GGEKHEDIGLSFNSLSNYEESY 130

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 Length = 340

 Score = 97.1 bits (241), Expect = 8e-24
 Identities = 22/143 (15%), Positives = 44/143 (30%), Gaps = 14/143 (9%)

Query: 88  KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIV 147
            VA+NG+G IG+        + D  + +V V  +     A    +    +   +  +K  
Sbjct: 3   NVAVNGYGTIGKRVADAIIKQPD--MKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKF 60

Query: 148 DNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207
           +   I V G +                   DIV++ T   V       ++Q     +   
Sbjct: 61  EESGIPVAGTVE------------DLIKTSDIVVDTTPNGVGAQYKPIYLQLQRNAIFQG 108

Query: 208 APAKGADIPTYVVGVNEKDYDHE 230
                    ++    N  +   +
Sbjct: 109 GEKAEVADISFSALCNYNEALGK 131

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	248
3doc_A	335	Glyceraldehyde 3-phosphate dehydrogenase; ssgcid,	100.0
3lvf_P	338	GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase	100.0
4dib_A	345	GAPDH, glyceraldehyde 3-phosphate dehydrogenase; n	100.0
3pym_A	332	GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase	100.0
3v1y_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	100.0
3ids_C	359	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, g	100.0
3h9e_O	346	Glyceraldehyde-3-phosphate dehydrogenase, testis-;	100.0
3hja_A	356	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; n	100.0
1obf_O	335	Glyceraldehyde 3-phosphate dehydrogenase; glycolyt	100.0
2b4r_O	345	Glyceraldehyde-3-phosphate dehydrogenase; SGPP, st	100.0
2ep7_A	342	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; o	100.0
2d2i_A	380	Glyceraldehyde 3-phosphate dehydrogenase; rossmann	100.0
2g82_O	331	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G	100.0
1rm4_O	337	Glyceraldehyde 3-phosphate dehydrogenase A; rossma	100.0
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	100.0
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	100.0
1gad_O	330	D-glyceraldehyde-3-phosphate dehydrogenase; oxidor	100.0
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	100.0
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	100.0
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	100.0
2x5j_O	339	E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid	100.0
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	100.0
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	99.95
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	99.86
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	99.84
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	99.81
2yv3_A	331	Aspartate-semialdehyde dehydrogenase; aspartate pa	99.76
2hjs_A	340	USG-1 protein homolog; aspartate-semialdehyde dehy	99.72
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	99.71
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	99.66
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	99.64
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	99.61
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	99.61
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	99.59
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	99.16
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	99.1
3tz6_A	344	Aspartate-semialdehyde dehydrogenase; asadh, ASD,	98.9
3pzr_A	370	Aspartate-semialdehyde dehydrogenase; NADP, oxidor	98.79
3uw3_A	377	Aspartate-semialdehyde dehydrogenase; structural g	98.73
4dpl_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	98.69
4dpk_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	98.69
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	98.6
3hsk_A	381	Aspartate-semialdehyde dehydrogenase; candida albi	98.2
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	97.77
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.21
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	97.03
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	96.9
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	96.77
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	96.62
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	96.58
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	96.54
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	96.52
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	96.48
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	96.4
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	96.35
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	96.34
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	96.27
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	96.24
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	96.22
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	96.18
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	96.12
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	96.02
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	95.99
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	95.99
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	95.97
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	95.92
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	95.92
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	95.85
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	95.81
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	95.72
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	95.67
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	95.66
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	95.64
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	95.56
1ydw_A	362	AX110P-like protein; structural genomics, protein	95.55
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	95.2
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	95.18
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	95.09
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	95.07
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	94.96
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	94.89
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	94.84
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	94.71
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	94.55
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	94.55
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	94.53
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	94.29
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	94.02
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	93.9
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	93.77
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	93.1
1ebf_A	358	Homoserine dehydrogenase; dinucleotide, NAD, dimer	92.85
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	92.57
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	92.51
4had_A	350	Probable oxidoreductase protein; structural genomi	92.4
3ing_A	325	Homoserine dehydrogenase; NP_394635.1, structural	92.21
4h3v_A	390	Oxidoreductase domain protein; structural genomics	92.16
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	91.54
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	91.46
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	91.42
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	91.32
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	91.12
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	91.11
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	90.98
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	90.82
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	90.8
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	90.72
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	90.71
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	90.54
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	90.52
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	89.97
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	89.97
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	89.77
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	89.73
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	89.49
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	89.31
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	89.26
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	89.17
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	89.1
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	88.73
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	88.68
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	88.64
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	88.52
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	88.51
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	88.41
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	88.31
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	88.27
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	88.2
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	88.18
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	88.17
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	87.8
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	87.79
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	87.74
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	87.74
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	87.63
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	87.24
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	86.86
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	86.84
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	86.8
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	86.55
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	86.54
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	86.52
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	86.51
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	86.22
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	85.85
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	85.66
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	85.36
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	85.08
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	85.05
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	84.93
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	84.83
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	84.8
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	84.33
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	84.07
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	83.87
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	83.62
1id1_A	153	Putative potassium channel protein; RCK domain, E.	83.15
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	82.3
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	82.1
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	81.63
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	81.06
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	80.76
3c85_A	183	Putative glutathione-regulated potassium-efflux S	80.57
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	80.14

>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural genomics, PSI, protein structure initiative; HET: NAD; 2.40A {Brucella melitensis biovar ABORTUS2308} PDB: 3l0d_A*

Probab=100.00  E-value=3.9e-57  Score=420.44  Aligned_cols=155  Identities=42%  Similarity=0.681  Sum_probs=147.8

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN  164 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~  164 (248)
                      |++||||||||||||+++|+++++..+++++|+|||+.|+++++||||||||||+|+++|++ ++++|++||++|+|+++
T Consensus         1 m~~kv~INGfGrIGr~v~Ra~~~~~~~~~~ivaiNd~~d~~~~a~l~kyDS~hG~f~~~v~~-~~~~l~i~Gk~I~v~~e   79 (335)
T 3doc_A            1 MAVRVAINGFGRIGRNILRAIVESGRTDIQVVAINDLGPVETNAHLLRYDSVHGRFPKEVEV-AGDTIDVGYGPIKVHAV   79 (335)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCSEEEEEEECSSCHHHHHHHHHEETTTEECSSCCEE-CSSEEESSSSEEEEECC
T ss_pred             CCEEEEEECCCcHHHHHHHHHHhccCCCeEEEEEeCCCCHHHHHHHhcccCCCCCCCCeEEE-ecCEEEECCEEEEEEee
Confidence            56899999999999999999998643579999999999999999999999999999999998 68899999999999999


Q ss_pred             CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--Ccc
Q 025797          165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--KNW  242 (248)
Q Consensus       165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~~~  242 (248)
                      +||+++||+++|+|||+||||.|+++|+++.||++||||||||||+++ ++|||||||||++|+++ ++||||||  +||
T Consensus        80 ~dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsaps~d-~~p~vV~gVN~~~~~~~-~~IISNasCTTn~  157 (335)
T 3doc_A           80 RNPAELPWKEENVDIALECTGIFTSRDKAALHLEAGAKRVIVSAPADG-ADLTVVYGVNNDKLTKD-HLVISNASCTTNC  157 (335)
T ss_dssp             SSTTSSCTTTTTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCTT-CSEECCTTTTGGGCCTT-CCEEECCCHHHHH
T ss_pred             cccccccccccCCCEEEEccCccCCHHHHHHHHHcCCCEEEECCCCCC-CCCEEecccCHHHhCcc-CCeEecCchhhhh
Confidence            999999999999999999999999999999999999999999999986 67999999999999987 89999999  887

>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1; oxidoreductase, glycolysis, rossmann fold; HET: NAD; 1.70A {Staphylococcus aureus} PDB: 3vaz_P* 3l6o_Q 3k73_Q 3lc2_O* 3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q* 3ksz_O*

Probab=100.00  E-value=1.6e-56  Score=416.76  Aligned_cols=153  Identities=43%  Similarity=0.667  Sum_probs=147.2

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN  164 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~  164 (248)
                      |++||||||||||||+++|+++++  +++++|+|||..|+++++||||||||||+|+++|++ ++++|++||++|+|+++
T Consensus         3 m~~kv~INGfGrIGr~v~R~~~~~--~~~~ivaind~~d~~~~a~l~kyDS~hG~f~~~v~~-~~~~l~inGk~I~v~~e   79 (338)
T 3lvf_P            3 MAVKVAINGFGRIGRLAFRRIQEV--EGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEV-VDGGFRVNGKEVKSFSE   79 (338)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHTS--TTEEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEE-ETTEEEETTEEEEEECC
T ss_pred             ccEEEEEECCCcHHHHHHHHHHHC--CCceEEEEecCCCHHHHHHHhccCCCCCCcCCeEEE-cCCEEEECCEEEEEEEe
Confidence            789999999999999999999985  479999999999999999999999999999999998 57899999999999999


Q ss_pred             CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--Ccc
Q 025797          165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--KNW  242 (248)
Q Consensus       165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~~~  242 (248)
                      +||+++||+++|+|||+||||.|++++.++.||++||||||||+|+++ |+|||||||||++|++. ++||||||  +||
T Consensus        80 ~dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViISaps~~-d~p~vV~gVN~~~~~~~-~~IISNasCTTn~  157 (338)
T 3lvf_P           80 PDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATG-DLKTIVFNTNHQELDGS-ETVVSGASCTTNS  157 (338)
T ss_dssp             SCGGGSCTTTTTCSEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCBS-SCEECCTTTTGGGCCSC-CSEEECCCHHHHH
T ss_pred             cccccCCccccCCCEEEEccCCcCCHHHHHHHHHcCCCEEEECCCCCC-CCCEEeccCCHHHcCcc-CCeEecCchhhhh
Confidence            999999999999999999999999999999999999999999999985 78999999999999977 89999999  887

>4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural genomics, national institute of allergy AN infectious diseases; 2.55A {Bacillus anthracis}

Probab=100.00  E-value=2e-56  Score=416.90  Aligned_cols=154  Identities=44%  Similarity=0.694  Sum_probs=145.8

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN  164 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~  164 (248)
                      +++||||||||||||+++|+++++  +++++|+|||+.|+++++||||||||||+|+++|++ ++++|++||++|+|+++
T Consensus         3 ~~~kv~INGfGrIGr~v~Ra~~~~--~~~~ivaINd~~d~~~~a~llkyDS~hG~f~~~v~~-~~~~l~inGk~I~v~~e   79 (345)
T 4dib_A            3 AMTRVAINGFGRIGRMVFRQAIKE--SAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEA-FEDHLLVDGKMIRLLNN   79 (345)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHTTC--SSSEEEEEECSSCHHHHHHHHHEETTTEECSSCEEE-CSSEEEETTEEEEEECC
T ss_pred             ccEEEEEECCCcHHHHHHHHHHhC--CCceEEEEcCCCCHHHHHHHhcccCCCCCCCCcEEE-cCCEEEECCEEEEEeec
Confidence            358999999999999999999986  479999999999999999999999999999999998 68899999999999999


Q ss_pred             CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--Ccc
Q 025797          165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--KNW  242 (248)
Q Consensus       165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~~~  242 (248)
                      +||+++||+++|+|||+||||.|+++|+++.||++||||||||+|+++ |+|||||||||++|++..++||||||  +||
T Consensus        80 ~dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViISaps~~-d~p~vV~gVN~~~~~~~~~~IISNaSCTTn~  158 (345)
T 4dib_A           80 RDPKELPWTDLGVEVVIEATGKFNSKEKAILHVEAGAKKVILTAPGKN-EDVTIVVGVNEDQLDITKHTVISNASCTTNC  158 (345)
T ss_dssp             SCGGGSCTTTTTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBS-CSEECCTTTTGGGCCTTTCSEEECCCHHHHH
T ss_pred             CChhhCCccccCccEEEEeccCcCCHHHHHHHHHCCCCEEEECCCCCC-CCCEEEecCCHHHcCcccCeEEECCchhhhh
Confidence            999999999999999999999999999999999999999999999985 78999999999999972289999999  887

>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding rossmann-fold domain, alpha and beta protein, oxidoreductase; HET: NAD; 2.00A {Saccharomyces cerevisiae} PDB: 2i5p_O*

Probab=100.00  E-value=4.5e-56  Score=412.87  Aligned_cols=150  Identities=45%  Similarity=0.719  Sum_probs=144.2

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC-CChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR  165 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~-~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~  165 (248)
                      +||||||||||||+++|+++++  +++++|+|||+ .|+++++||||||||||+|+++|++ ++++|++||++|+|++++
T Consensus         2 ~kv~INGfGrIGr~v~R~~~~~--~~~~ivaiNd~~~d~~~~a~l~kyDS~hG~f~~~v~~-~~~~l~i~Gk~I~v~~e~   78 (332)
T 3pym_A            2 VRVAINGFGRIGRLVMRIALSR--PNVEVVALNDPFITNDYAAYMFKYDSTHGRYAGEVSH-DDKHIIVDGKKIATYQER   78 (332)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHS--TTCEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEE-CSSEEEETTEEEEEECCS
T ss_pred             eEEEEECCCcHHHHHHHHHHhC--CCcEEEEEeCCCCCHHHHHHHhcccCCCCCCCCcEEE-cCCEEEECCEEEEEEeec
Confidence            6999999999999999999986  47999999998 8999999999999999999999998 688999999999999999


Q ss_pred             CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--Ccc
Q 025797          166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--KNW  242 (248)
Q Consensus       166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~~~  242 (248)
                      ||+++||+++|+|||+||||.|+++|+++.||++||||||||+|++  |+|||||||||++|+++ ++||||||  +||
T Consensus        79 dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsaps~--d~p~vV~gVN~~~~~~~-~~IISnasCTTn~  154 (332)
T 3pym_A           79 DPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVITAPSS--TAPMFVMGVNEEKYTSD-LKIVSNASCTTNC  154 (332)
T ss_dssp             SGGGSCTTTTTCSEEEECSSSSCSHHHHHHHHHTTCSEEEESSCCS--SSCBCCTTTTGGGCCTT-CCEEECCCHHHHH
T ss_pred             ccccCCccccCccEEEEecccccCHHHHHHHHHcCCCEEEECCCCC--CCCeEeeccchhhcCcc-ccEEecCcchhhh
Confidence            9999999999999999999999999999999999999999999997  46999999999999987 89999999  887

>3v1y_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosol; rossmann fold; HET: NAD; 1.86A {Oryza sativa japonica group} PDB: 3e5r_O* 3e6a_O

Probab=100.00  E-value=1.5e-55  Score=410.05  Aligned_cols=152  Identities=42%  Similarity=0.712  Sum_probs=144.2

Q ss_pred             eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC-CChhhhhhhccccCcCcccCc-eEEEecCCcEEECCeEEEEEe
Q 025797           86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKA-DVKIVDNETISVDGKLIKVVS  163 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~-~~~e~~ayLLkYDStHGkf~g-~V~v~e~~~L~inGk~I~v~~  163 (248)
                      ++||||||||||||+++|+++++  +++++|+|||+ .|+++++||||||||||+|++ +|+++++++|++||++|+|++
T Consensus         3 ~~kv~INGfGrIGr~v~R~~~~~--~~~~ivaiNd~~~d~~~~a~l~kyDS~hG~f~~~~v~~~~~~~l~i~Gk~I~v~~   80 (337)
T 3v1y_O            3 KIKIGINGFGRIGRLVARVALQS--EDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFG   80 (337)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTC--SSEEEEEEECTTSCHHHHHHHHHCCTTTCCCCSSCEEEEETTEEEETTEEEEEEC
T ss_pred             ceEEEEECCChHHHHHHHHHHhC--CCcEEEEEeCCCCCHHHHHHHhhhccCCCcccCceEEEcCCcEEEECCEEEEEEE
Confidence            48999999999999999999985  47999999999 899999999999999999999 999854339999999999999


Q ss_pred             cCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--Cc
Q 025797          164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--KN  241 (248)
Q Consensus       164 ~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~~  241 (248)
                      ++||+++||+++|+|||+||||.|+++++++.||++||||||||+|++  |+|||||||||++|+++ ++||||||  +|
T Consensus        81 e~dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsaps~--d~p~vV~gVN~~~~~~~-~~IISnasCTTn  157 (337)
T 3v1y_O           81 IRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSK--DAPMFVCGVNEDKYTSD-IDIVSNASCTTN  157 (337)
T ss_dssp             CSSGGGCCHHHHTCCEEEECSSSCCSHHHHTHHHHTTCCEEEESSCCS--SSCBCCTTTTGGGCCTT-CCEEECCCHHHH
T ss_pred             ecCcccCCccccCCcEEEEeccccCCHHHHHHHHHcCCCEEEECCCCC--CCCeECCCCCHHHcCCC-CcEEecCchhhh
Confidence            999999999999999999999999999999999999999999999997  57999999999999987 89999999  88


Q ss_pred             c
Q 025797          242 W  242 (248)
Q Consensus       242 ~  242 (248)
                      |
T Consensus       158 ~  158 (337)
T 3v1y_O          158 C  158 (337)
T ss_dssp             H
T ss_pred             h
Confidence            7

>3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso; irreversible inhibitor, protein-ligand complex,X-RAY, glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A* 1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A*

Probab=100.00  E-value=1e-55  Score=413.99  Aligned_cols=155  Identities=39%  Similarity=0.662  Sum_probs=145.8

Q ss_pred             ceeeEEEeCCChhhHHHHHH----HhhCCCCCeEEEEEeCC-CChhhhhhhccccCcCcccCceEEEe-------cCCcE
Q 025797           85 AKLKVAINGFGRIGRNFLRC----WHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIV-------DNETI  152 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~----~~~~~~~~l~iVaIND~-~~~e~~ayLLkYDStHGkf~g~V~v~-------e~~~L  152 (248)
                      |++||||||||||||+++|+    ++++  .++++|+|||| .|+++++||||||||||+|+++|+++       ++++|
T Consensus         1 m~~kv~INGFGrIGr~v~Ra~~~~~~~~--~~~~vvaINd~~~d~~~~a~llkyDS~hG~f~~~v~~~~~~~~~~~~~~l   78 (359)
T 3ids_C            1 MPIKVGINGFGRIGRMVFQALCEDGLLG--TEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYEVTTTKSSPSVAKDDTL   78 (359)
T ss_dssp             CCEEEEEECTTHHHHHHHHHHHHTTCBT--TTEEEEEEECSSCCHHHHHHHHHEETTTEECSSCEEEECSCTTSSSCCEE
T ss_pred             CceEEEEECCChHHHHHHHHhHHHHhcC--CCcEEEEEecCCCCHHHHHHHhcccCCCCCEeeEEEecccccccCCCCEE
Confidence            57899999999999999999    6654  47999999996 89999999999999999999999983       68899


Q ss_pred             EECCeEEEEEe-cCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCC-C
Q 025797          153 SVDGKLIKVVS-NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDH-E  230 (248)
Q Consensus       153 ~inGk~I~v~~-~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~-~  230 (248)
                      ++||++|+|++ ++||+++||+++|+|||+||||.|+++++++.||++||||||||||+++ |+|||||||||++|++ .
T Consensus        79 ~inGk~I~v~~~e~dp~~i~w~~~gvDiVlesTG~f~s~e~A~~hl~aGAkkViISaps~~-d~p~vV~gVN~~~~~~~~  157 (359)
T 3ids_C           79 VVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPASG-GAKTLVMGVNHHEYNPSE  157 (359)
T ss_dssp             EETTEEEEECCCCSSTTTSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCCEEEESSCCBS-SCEECCTTTTGGGCCTTT
T ss_pred             EECCEEEEEEEccCCcccCCccccCccEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCC-CCCeEEeccCHHHcCCCC
Confidence            99999999999 9999999999999999999999999999999999999999999999985 7899999999999998 6


Q ss_pred             CCeEEeecC--Cccc
Q 025797          231 VANIVRSWM--KNWG  243 (248)
Q Consensus       231 ~~~IISnAS--~~~~  243 (248)
                       ++||||||  +||=
T Consensus       158 -~~IISNaSCTTn~L  171 (359)
T 3ids_C          158 -HHVVSNASCTTNCL  171 (359)
T ss_dssp             -CSEEECCCHHHHHH
T ss_pred             -CCEEECCchHhhhH
Confidence             89999999  8883

>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*

Probab=100.00  E-value=3.3e-54  Score=402.17  Aligned_cols=151  Identities=42%  Similarity=0.692  Sum_probs=144.2

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC-CChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEe
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS  163 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~-~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~  163 (248)
                      .++||||||||||||+++|+++++  . ++||+|||+ .++++++||||||||||+|+++|++ ++++|++||++|+|++
T Consensus         6 ~~~kvgInGFGRIGrlv~R~~~~~--~-veivainDp~~d~~~~a~l~~yDS~hG~f~~~v~~-~~~~l~i~Gk~I~v~~   81 (346)
T 3h9e_O            6 RELTVGINGFGRIGRLVLRACMEK--G-VKVVAVNDPFIDPEYMVYMFKYDSTHGRYKGSVEF-RNGQLVVDNHEISVYQ   81 (346)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT--T-CEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEE-ETTEEEETTEEEEEEC
T ss_pred             CeeEEEEECCChHHHHHHHHHHhC--C-CEEEEEeCCCCChhHhcccccccCCCCCCCCcEEE-cCCEEEECCEEEEEEe
Confidence            458999999999999999999986  2 999999998 8999999999999999999999998 5889999999999999


Q ss_pred             cCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCC-CCCeEEeecC--C
Q 025797          164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDH-EVANIVRSWM--K  240 (248)
Q Consensus       164 ~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~-~~~~IISnAS--~  240 (248)
                      ++||+++||+++|+|||+||||.|++++.++.||++||||||||+|++  |+|||||||||++|++ + ++||||||  +
T Consensus        82 e~dp~~i~W~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkVVIsaps~--d~plvV~gVN~~~~~~~~-~~IISNasCTT  158 (346)
T 3h9e_O           82 CKEPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQRVVISAPSP--DAPMFVMGVNENDYNPGS-MNIVSNASCTT  158 (346)
T ss_dssp             CSSGGGCCGGGGTSCEEEECSSSCCSHHHHHHHHHTTCSEEEESSCCS--SSCBCCTTTTGGGCCTTT-CSEEECCCHHH
T ss_pred             cCChhhCCcccccccEEEEeccccCCHHHHHHHHHcCCCEEEECCCCC--CCCeeCcccCHHHcCccc-CCEEECCcchh
Confidence            999999999999999999999999999999999999999999999996  5899999999999997 6 89999999  8


Q ss_pred             cc
Q 025797          241 NW  242 (248)
Q Consensus       241 ~~  242 (248)
                      ||
T Consensus       159 n~  160 (346)
T 3h9e_O          159 NC  160 (346)
T ss_dssp             HH
T ss_pred             hh
Confidence            87

>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid, decode, UW, SBRI, LYME disease, non-hodgkin lymphomas, cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31}

Probab=100.00  E-value=2.2e-53  Score=397.83  Aligned_cols=152  Identities=48%  Similarity=0.792  Sum_probs=144.9

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN  164 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~  164 (248)
                      |++||||||||||||+++|+++++   +++||+|||+.|+++++||||||||||+|+++++. ++++|++||++|+|+++
T Consensus        20 ~~~kVaInGfGrIGr~vlr~l~e~---~~~ivaIndl~d~~~~a~llkydS~hG~f~~~v~~-~~~~l~i~Gk~I~v~~~   95 (356)
T 3hja_A           20 GSMKLAINGFGRIGRNVFKIAFER---GIDIVAINDLTDPKTLAHLLKYDSTFGVYNKKVES-RDGAIVVDGREIKIIAE   95 (356)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHT---TCEEEEEECSSCHHHHHHHHHEETTTEECSSCEEE-ETTEEEETTEEEEEECC
T ss_pred             CCeEEEEECCCHHHHHHHHHHHHC---CCCEEEEeCCCCHHHhhhhhccccCCCCCCCCEEE-cCCEEEECCEEEEEEEc
Confidence            569999999999999999999986   69999999999999999999999999999999998 57899999999999999


Q ss_pred             CCCCCCCCCCCcccEEecCcccccC----chhhhHHHH-cCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC
Q 025797          165 RDPLQLPWAELGIDIVIEGTGVFVD----GPGAGKHIQ-AGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM  239 (248)
Q Consensus       165 ~dP~~i~W~~~GidiVVE~TG~F~~----~e~a~~HL~-~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS  239 (248)
                      +||+++||+++|+|||+||||.|++    +++++.||+ +||||||||+|+++ ++|||||||||++|+++ ++||||||
T Consensus        96 ~dp~~i~w~~~gvDiV~esTG~f~s~~~~~e~a~~hl~~aGAkkVVIsaps~d-~vp~vV~gVN~~~~~~~-~~IISNaS  173 (356)
T 3hja_A           96 RDPKNLPWAKLGIDVVIESTGVFSSATSDKGGYLDHVNHAGAKKVILTVPAKD-EIKTIVLGVNDHDINSD-LKAVSNAS  173 (356)
T ss_dssp             SSGGGCCHHHHTCSEEEECSSSCCSSCCTTCCGGGGTTTSCCSEEEESSCCSS-CCEECCTTTSGGGCCTT-CCEEECCC
T ss_pred             CChhhCCccccCCCEEEEecccccccchhHHHHHHHHHhCCCeEEEECCCCCC-CCCEEeccCCHHHcCcC-ccEEECCc
Confidence            9999999999999999999999999    999999999 99999999999986 78999999999999987 79999999


Q ss_pred             --Ccc
Q 025797          240 --KNW  242 (248)
Q Consensus       240 --~~~  242 (248)
                        +||
T Consensus       174 CTTn~  178 (356)
T 3hja_A          174 CTTNC  178 (356)
T ss_dssp             HHHHH
T ss_pred             cchhh
Confidence              887

>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway, oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A {Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB: 3gnq_A*

Probab=100.00  E-value=1.1e-49  Score=370.15  Aligned_cols=153  Identities=41%  Similarity=0.717  Sum_probs=144.7

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCC-CCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRK-DSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR  165 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~-~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~  165 (248)
                      +||||||||||||+++|+++++. .+++++|+|||+.++++++|||||||+||+|+++|++ +++.|.+||++|+|++++
T Consensus         2 ikVaInGfGrIGr~v~r~l~~~~~~~~~evvaInd~~~~~~~a~ll~ydS~hg~f~~~v~~-~~~~l~v~g~~i~v~~~~   80 (335)
T 1obf_O            2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVSV-NGSYMVVNGDKIRVDANR   80 (335)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEE-ETTEEEETTEEEEEECCS
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCCcEEEEEeCCCCHHHHHHHhccCCcCCCCCCCEEE-eCCEEEECCEEEEEEEcC
Confidence            69999999999999999999862 2479999999999999999999999999999999998 588999999999999999


Q ss_pred             CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCC-eEEeecCCCCCCCCCCeEEeecC--Ccc
Q 025797          166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIP-TYVVGVNEKDYDHEVANIVRSWM--KNW  242 (248)
Q Consensus       166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~p-tiV~GVN~~~y~~~~~~IISnAS--~~~  242 (248)
                      ||+++||+++|+|||+||||.|++++.+..|+++||||||||+|+++ |.| ||||||||++|++. ++||||||  +||
T Consensus        81 dp~~~~w~~~gvDiV~estG~f~s~e~a~~h~~aGakkVviSaps~~-dvp~~vV~gVN~~~~~~~-~~IISNasCTTn~  158 (335)
T 1obf_O           81 NPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVIISAPGGA-DVDATVVYGVNHGTLKST-DTVISNASCTTNC  158 (335)
T ss_dssp             CGGGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEESSCCCT-TSSEECCTTTSGGGCCTT-CCEEECCCHHHHH
T ss_pred             CcccCCccccCCCEEEEccCccccHHHHHHHHHcCCCEEEECCcccC-CCCceEEccCCHHHhCcC-ccEEeCCcHHHHH
Confidence            99999999999999999999999999999999999999999999974 689 99999999999986 89999999  887

>2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural genomics, PSI, structural genomi pathogenic protozoa consortium; HET: NAD AES; 2.25A {Plasmodium falciparum} SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O*

Probab=100.00  E-value=9.7e-50  Score=371.95  Aligned_cols=153  Identities=41%  Similarity=0.705  Sum_probs=144.6

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC-CChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEe
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS  163 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~-~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~  163 (248)
                      ..+||||||||||||+++|+++++  +++++|+|||| .++++++|||||||+||+|+++|++ +++.|.+||++|+|++
T Consensus        10 ~~~kv~INGfGrIGr~v~ra~~~~--~~~evvaInd~~~~~~~~a~l~~yDS~hg~~~~~v~~-~~~~l~v~Gk~i~v~~   86 (345)
T 2b4r_O           10 AATKLGINGFGRIGRLVFRAAFGR--KDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTH-ADGFLLIGEKKVSVFA   86 (345)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHTC--SSEEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEE-ETTEEEESSCEEEEEC
T ss_pred             hheEEEEeCCchHHHHHHHHHhhC--CCcEEEEEcCCCCChHHHHHHhccCCCCCcCCCCEEE-cCCEEEECCEEEEEEE
Confidence            368999999999999999999976  57999999994 8999999999999999999999998 5889999999999999


Q ss_pred             cCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--Cc
Q 025797          164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--KN  241 (248)
Q Consensus       164 ~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~~  241 (248)
                      ++||+++||+++|+|||+||||.|++++.+..|+++||||||||+|+++ |.||||||||++.|++. ++||||||  +|
T Consensus        87 ~~dp~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVVIsaps~~-dvplvV~gVN~~~~~~~-~~IISNasCTTn  164 (345)
T 2b4r_O           87 EKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMSAPPKD-DTPIYVMGINHHQYDTK-QLIVSNASCTTN  164 (345)
T ss_dssp             CSSGGGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCSS-SCCBCCTTTTGGGCCTT-CCEEECCCHHHH
T ss_pred             cCCcccCcccccCCCEEEECcCccccHhhHHHHHHCCCCEEEECCCCCC-CCCEEEecCCHHHhCCC-CCEEECCchHHH
Confidence            9999999999999999999999999999999999999999999999985 68999999999999986 89999999  88


Q ss_pred             c
Q 025797          242 W  242 (248)
Q Consensus       242 ~  242 (248)
                      |
T Consensus       165 ~  165 (345)
T 2b4r_O          165 C  165 (345)
T ss_dssp             H
T ss_pred             H
Confidence            7

>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase, structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex aeolicus}

Probab=100.00  E-value=2.9e-49  Score=368.34  Aligned_cols=153  Identities=52%  Similarity=0.862  Sum_probs=143.3

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN  164 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~  164 (248)
                      |++||||||||||||+++|+++++  +++++|+|||..++++++|||||||+||+|+++|++ +++.|.+||++|+|+++
T Consensus         1 m~ikV~InGfGrIGr~v~r~l~~~--~~~evvaInd~~~~~~~a~ll~yDs~hG~~~~~v~~-~~~~l~v~Gk~i~v~~~   77 (342)
T 2ep7_A            1 MAIKVGINGFGRIGRSFFRASWGR--EEIEIVAINDLTDAKHLAHLLKYDSVHGIFKGSVEA-KDDSIVVDGKEIKVFAQ   77 (342)
T ss_dssp             --CEEEEECCSHHHHHHHHHHTTC--TTCEEEEEECSSCHHHHHHHHHEETTTEECSSCEEE-CSSEEEETTEEEEEECC
T ss_pred             CceEEEEECCCHHHHHHHHHHHhC--CCceEEEEecCCChHHHhhhhhcccccccCCCcEEE-cCCEEEECCEEEEEEEc
Confidence            457999999999999999999875  579999999998999999999999999999999998 58899999999999999


Q ss_pred             CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCC-eEEeecCCCCCCCCCCeEEeecC--Cc
Q 025797          165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIP-TYVVGVNEKDYDHEVANIVRSWM--KN  241 (248)
Q Consensus       165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~p-tiV~GVN~~~y~~~~~~IISnAS--~~  241 (248)
                      +||+++||+++|+|||+||||.|++++.+..|+++||||||||+|++  |.| ||||||||+.|++..++||||||  +|
T Consensus        78 ~dp~~~~w~~~gvDiV~estG~~~s~e~a~~hl~aGakkVvisaps~--dvp~~vV~gVN~~~~~~~~~~IISNasCTTn  155 (342)
T 2ep7_A           78 KDPSQIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVIITAPAK--NPDITVVLGVNEEKYNPKEHNIISNASCTTN  155 (342)
T ss_dssp             SSGGGCCHHHHTCSEEEECSSSCCBHHHHTTTGGGTCSEEEESSCCB--SCSEECCTTTSGGGCCTTTCCEEECCCHHHH
T ss_pred             CChhhCCccccCCCEEEECCCchhhhhhhHHHHhcCCCEEEecCCCC--CCCceEEcCcCHHHhcccCCeEEECCChHHH
Confidence            99999999999999999999999999999999999999999999997  589 99999999999973278999999  88


Q ss_pred             c
Q 025797          242 W  242 (248)
Q Consensus       242 ~  242 (248)
                      |
T Consensus       156 ~  156 (342)
T 2ep7_A          156 C  156 (342)
T ss_dssp             H
T ss_pred             H
Confidence            7

>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A

Probab=100.00  E-value=1.6e-45  Score=347.03  Aligned_cols=156  Identities=55%  Similarity=0.993  Sum_probs=145.0

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN  164 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~  164 (248)
                      |++||||||||||||+++|+++++..+++++|+|||..++++++|||+|||+||+|.++|++ +++.|.+||+.|+++++
T Consensus         1 M~ikVgInGfGrIGr~vlR~l~~~~~~~veIVaInd~~d~~~~a~ll~yds~~G~~~~~v~~-~~~~l~v~g~~i~v~~~   79 (380)
T 2d2i_A            1 MTIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISY-DENSITVNGKTMKIVCD   79 (380)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEE-ETTEEEETTEEEEEECC
T ss_pred             CCcEEEEECcCHHHHHHHHHHhcCCCCCEEEEEEecCCCHHHHHHhhcccccCCCCCCcEEE-eCCeEEECCeEEEEEec
Confidence            45799999999999999999988632579999999999999999999999999999999998 57889999999999999


Q ss_pred             CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCC-eEEeecCCCCCCCCCCeEEeecC--Cc
Q 025797          165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIP-TYVVGVNEKDYDHEVANIVRSWM--KN  241 (248)
Q Consensus       165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~p-tiV~GVN~~~y~~~~~~IISnAS--~~  241 (248)
                      +||++++|++.|+|||+||||.|++++.+..||++|+|||||++|+++ +.| ||||||||++|++..++||||||  +|
T Consensus        80 ~dp~~l~w~~~gvDvV~e~TG~f~s~e~a~~hl~aGakkVVIs~ps~d-~~p~~~V~GVN~e~~~~~~~~IVSNasCtTn  158 (380)
T 2d2i_A           80 RNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLITAPGKA-EGVGTYVIGVNDSEYRHEDFAVISNASCTTN  158 (380)
T ss_dssp             SCGGGCCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCBS-SSCEECCTTTTGGGCCTTTCSEEECCCHHHH
T ss_pred             CChHHCCcccCCCCEEEECCCccccHHHHHHHHHcCCcEEEEcCCCCC-CCCceEEcccCHHHhcccCCcEEECCchHHH
Confidence            999999999999999999999999999999999999999999999974 578 99999999999973368999999  88


Q ss_pred             c
Q 025797          242 W  242 (248)
Q Consensus       242 ~  242 (248)
                      |
T Consensus       159 ~  159 (380)
T 2d2i_A          159 C  159 (380)
T ss_dssp             H
T ss_pred             H
Confidence            7

>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A*

Probab=100.00  E-value=2.2e-45  Score=340.08  Aligned_cols=151  Identities=48%  Similarity=0.781  Sum_probs=142.2

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD  166 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~d  166 (248)
                      +||||||||||||+++|+++++   ++++|+|||..++++++|||+|||+||+|.++|+. +++.|.+||+.|++++++|
T Consensus         1 ikVgInG~G~IGr~vlr~l~~~---~~evvaind~~~~~~~a~ll~~ds~~G~~~~~v~~-~~~~l~v~g~~i~v~~~~d   76 (331)
T 2g82_O            1 MKVGINGFGRIGRQVFRILHSR---GVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAY-DDQYLYVDGKAIRATAVKD   76 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH---TCCEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEE-CSSEEEETTEEEEEECCSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhC---CCEEEEEecCCCHHHHhHhhhccccCCCCCceEEE-cCCEEEECCEEEEEEecCC
Confidence            4899999999999999999876   69999999999999999999999999999999997 5788999999999999999


Q ss_pred             CCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--Ccc
Q 025797          167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--KNW  242 (248)
Q Consensus       167 P~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~~~  242 (248)
                      |++++|+++|+|+|+||||.|++++.+..|+++|||||||++|+++ +.||||||||+++|+++.++||||||  +||
T Consensus        77 p~~l~w~~~gvDiV~estG~~~s~e~a~~~l~aGakkvVIsaps~d-~~p~vV~gVN~~~~~~~~~~IIsnasCtTn~  153 (331)
T 2g82_O           77 PKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKG-EDITIVMGVNHEAYDPSRHHIISNASCTTNS  153 (331)
T ss_dssp             GGGSCTTTTTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBS-CSEECCTTTTGGGCCTTTCCEEECCCHHHHH
T ss_pred             hhhCcccccCCCEEEECCCchhhHHHHHHHHHCCCCEEEECCCCcC-CCCEEeeccCHHHhCcCCCCEEECCChHHHH
Confidence            9999999999999999999999999999999999999999999984 57999999999999962168999999  887

>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O*

Probab=100.00  E-value=9.7e-45  Score=336.64  Aligned_cols=155  Identities=75%  Similarity=1.247  Sum_probs=145.0

Q ss_pred             eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797           86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR  165 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~  165 (248)
                      ++||||||||||||.++|+++++..+.+++|+|||..++++++|||+|||+||+|.++|...+++.|.+||+.|++++++
T Consensus         1 ~ikVgInG~G~IGr~llR~l~~~~~p~~eivaInd~~~~~~~a~ll~sds~~G~~~~~v~~~~~~~l~v~g~~i~v~~~~   80 (337)
T 1rm4_O            1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDR   80 (337)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCSSCSEEEEEEECTTCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECCS
T ss_pred             CeEEEEECCCHHHHHHHHHHHhCCCCCeEEEEEEcCCCHHHHHHHhcccccCCCccceeEEecCCeEEECCeEEEEEecC
Confidence            37999999999999999999986436799999999999999999999999999999999943577899999999999999


Q ss_pred             CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--Ccc
Q 025797          166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--KNW  242 (248)
Q Consensus       166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~~~  242 (248)
                      ||+++||+++|+|+|+||||.|++++.+..||++|+|+|++|||.++ |.|||||||||++|++. ++||||||  +||
T Consensus        81 dp~~i~w~~~gvDiV~eatg~~~s~e~a~~~l~~Gak~V~iSap~r~-d~p~~V~GVN~~~~~~~-~~IIsNasCtTn~  157 (337)
T 1rm4_O           81 NPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGKG-DIPTYVVGVNEEGYTHA-DTIISNASCTTNC  157 (337)
T ss_dssp             CGGGSCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCBS-SCCBCCTTTTGGGCCTT-CSEEECCCHHHHH
T ss_pred             ChhhCcccccCCCEEEECCCchhhHHHHHHHHHcCCEEEEECCcccC-CCCeEeecCCHHHhCCC-CeEEECCChHHHH
Confidence            99999999999999999999999999999999999999999999984 67999999999999976 79999999  887

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*

Probab=100.00  E-value=2.2e-44  Score=334.00  Aligned_cols=156  Identities=56%  Similarity=1.006  Sum_probs=145.1

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN  164 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~  164 (248)
                      |++||||||||||||.++|+++++..+++++|+|||..++++++|||+|||+||+|.++|+. +++.|.+||+.|+++++
T Consensus         1 M~ikVgI~G~G~IGr~v~r~l~~~~~~~~evvaInd~~~~~~~~~l~~~ds~~G~~~~~v~~-~~~~l~v~g~~i~v~~~   79 (339)
T 3b1j_A            1 MTIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISY-DENSITVNGKTMKIVCD   79 (339)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHCSCCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEE-ETTEEEETTEEEEEECC
T ss_pred             CceEEEEECCCHHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHhccccccCCCCCcEEE-cCCeeeecCceEEEEec
Confidence            45799999999999999999988633579999999999999999999999999999999998 57889999999999999


Q ss_pred             CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCC-eEEeecCCCCCCCCCCeEEeecC--Cc
Q 025797          165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIP-TYVVGVNEKDYDHEVANIVRSWM--KN  241 (248)
Q Consensus       165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~p-tiV~GVN~~~y~~~~~~IISnAS--~~  241 (248)
                      +||++++|++.|+|+|+||||.|++++.+..||++|+|||||++|+++ +.| +||||||++.|++..++||||||  +|
T Consensus        80 ~dp~~l~w~~~~vDvV~e~tg~~~s~e~a~~~l~~GakkVVId~~~~~-~~p~~~V~gVN~~~~~~~~~~IISnasCtTn  158 (339)
T 3b1j_A           80 RNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLITAPGKG-EGVGTYVIGVNDSEYRHEDFAVISNASCTTN  158 (339)
T ss_dssp             SCGGGSCTTTTTCCEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCBS-SSCEECCTTTTGGGCCTTTCSEEECCCHHHH
T ss_pred             CChHHCcccccCCCEEEECCCccccHHHHHHHHHcCCcEEEEeCCCCC-CCCeeEEcccCHHHhCcCCCeEEECCcchhh
Confidence            999999999999999999999999999999999999999999999974 578 99999999999974368999999  78


Q ss_pred             c
Q 025797          242 W  242 (248)
Q Consensus       242 ~  242 (248)
                      |
T Consensus       159 ~  159 (339)
T 3b1j_A          159 C  159 (339)
T ss_dssp             H
T ss_pred             H
Confidence            7

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=100.00  E-value=2.8e-43  Score=328.82  Aligned_cols=154  Identities=42%  Similarity=0.725  Sum_probs=141.6

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC-CCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEe
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND-SGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS  163 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND-~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~  163 (248)
                      +++||||||||||||.++|+++++  +++++|+||| ..++++++|||+|||+||+|.++|++ +++.|.+||+.|++++
T Consensus        16 ~~ikVgI~G~G~iGr~llR~l~~~--p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~-~~~~l~v~g~~i~v~~   92 (354)
T 3cps_A           16 FQGTLGINGFGRIGRLVLRACMER--NDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEV-SGKDLCINGKVVKVFQ   92 (354)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHTC--SSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEE-CC-CEEETTEEEEEEC
T ss_pred             cceEEEEECCCHHHHHHHHHHHcC--CCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEE-eCCEEEECCeEEEEEe
Confidence            458999999999999999999876  5799999999 58999999999999999999999998 5789999999999999


Q ss_pred             cCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--Cc
Q 025797          164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--KN  241 (248)
Q Consensus       164 ~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~~  241 (248)
                      ++||++++|++.|+|+|+||||.|++++.+..||++|+|||||++|+++ +.||+|||||+++|++..++||||||  +|
T Consensus        93 ~~dp~~i~w~~~~vDvV~eatg~~~s~e~a~~~l~~GakkvVId~padd-~~p~~V~GVN~~~~~~~~~~IISNpsCtTn  171 (354)
T 3cps_A           93 AKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIISAPPKD-NVPMYVMGVNNTEYDPSKFNVISNASCTTN  171 (354)
T ss_dssp             CSCGGGCCHHHHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEESSCCSS-CCCBCCTTTTGGGCCTTTCSEEECCCHHHH
T ss_pred             cCChHHCCcccCCCCEEEECCCchhhHHHHHHHHHcCCcEEEEeCCCCC-CCCEEEeccCHHHhCcCCCcEEECCCcHHH
Confidence            9999999999999999999999999999999999999999999999974 57999999999999863268999999  88


Q ss_pred             c
Q 025797          242 W  242 (248)
Q Consensus       242 ~  242 (248)
                      |
T Consensus       172 ~  172 (354)
T 3cps_A          172 C  172 (354)
T ss_dssp             H
T ss_pred             H
Confidence            7

>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*

Probab=100.00  E-value=4.6e-43  Score=323.84  Aligned_cols=150  Identities=43%  Similarity=0.727  Sum_probs=142.2

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD  166 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~d  166 (248)
                      +||||||||||||.++|+++++  ++++||+|||..+.++++|||+|||+||+|.++++. +++.|.+||+.|++++++|
T Consensus         2 ikVgI~G~G~iG~~l~R~l~~~--~~veiv~i~~~~~~~~~a~l~~~ds~~g~~~~~v~~-~~~~l~v~g~~i~v~~~~d   78 (330)
T 1gad_O            2 IKVGINGFGRIGRIVFRAAQKR--SDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEV-KDGHLIVNGKKIRVTAERD   78 (330)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTC--SSEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEE-ETTEEEETTEEEEEECCSS
T ss_pred             eEEEEECcCHHHHHHHHHHHcC--CCeEEEEEcCCCChhHHhHhhcccccCCCCCCeEEE-cCCEEEECCEEEEEEEcCC
Confidence            7999999999999999999876  579999999998999999999999999999999998 5788999999999999999


Q ss_pred             CCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--Ccc
Q 025797          167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--KNW  242 (248)
Q Consensus       167 P~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~~~  242 (248)
                      |+++||++.|+|+|+||||.|++++.+..|+++|+|+|++|||.++ |.|++|||||++.|+ . ++||||||  +||
T Consensus        79 p~~i~w~~~~vDvVf~atg~~~s~e~a~~~l~~GakvVdlSa~~~~-~~p~~V~GvN~~~~~-~-~~iIsNpsCtt~~  153 (330)
T 1gad_O           79 PANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKD-NTPMFVKGANFDKYA-G-QDIVSNASCTTNC  153 (330)
T ss_dssp             GGGGCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCSS-SCCBCCTTTTGGGCC-S-CSEEECCCHHHHH
T ss_pred             hhhCccccccCCEEEECCCccccHHHHHHHHHCCCEEEEECCCCCC-CCCeEeecCCHHHhC-C-CCEEEcCChHHHH
Confidence            9999999999999999999999999999999999999999999964 679999999999998 5 78999999  787

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*

Probab=100.00  E-value=8.1e-43  Score=322.87  Aligned_cols=152  Identities=46%  Similarity=0.753  Sum_probs=142.5

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD  166 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~d  166 (248)
                      +||||||||||||.++|+++++  +++++|+|||..++++++|||+|||+||+|.++|+. +++.|.+||+.|++++++|
T Consensus         2 ikVgI~G~G~iGr~l~R~l~~~--~~veivain~~~~~~~~~~ll~~ds~~G~~~~~v~~-~~~~l~v~g~~i~v~~~~d   78 (334)
T 3cmc_O            2 VKVGINGFGRIGRNVFRAALKN--PDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSV-NGNNLVVNGKEIIVKAERD   78 (334)
T ss_dssp             EEEEEESCSHHHHHHHHHHTTC--TTEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEE-ETTEEEETTEEEEEECCSS
T ss_pred             eEEEEECCCHHHHHHHHHHhCC--CCeEEEEEeCCCCHHHHHHHhccCCcCCCcCceEEE-ccCcEEECCEEEEEEecCC
Confidence            7999999999999999999876  579999999998999999999999999999999998 5789999999999999999


Q ss_pred             CCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--Ccc
Q 025797          167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--KNW  242 (248)
Q Consensus       167 P~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~~~  242 (248)
                      |+++||++.|+|+|+||||.|++++.+..|+++|+|||||++|+++ +.|++|+|||+++|+++.++||||||  +||
T Consensus        79 p~~i~w~~~~vDvV~~atg~~~s~e~a~~~l~~Gak~vVId~pa~d-~~p~~V~eVN~~~i~~~~~~IIsNpsCttn~  155 (334)
T 3cmc_O           79 PENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKN-EDITIVMGVNQDKYDPKAHHVISNASCTTNC  155 (334)
T ss_dssp             GGGCCTGGGTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBS-CSEECCTTTSGGGCCTTTCCEEECCCHHHHH
T ss_pred             hhhcCcccCccCEEEECCCchhhHHHHHHHHHCCCCEEEEeCCCcc-CCCEeccccCHHHhCccCCeEEECCChHHHH
Confidence            9999999999999999999999999999999999999999999974 57999999999999862168999999  787

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=100.00  E-value=1.9e-42  Score=320.14  Aligned_cols=152  Identities=49%  Similarity=0.724  Sum_probs=142.5

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD  166 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~d  166 (248)
                      +||||||||||||.++|+++++..+++++|+|||..++++++|||+|||+||+|.++|+. +++.|.+||+.|++++++|
T Consensus         1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivain~~~~~~~~~~ll~~ds~~g~~~~~v~~-~~~~l~v~g~~i~v~~~~d   79 (332)
T 1hdg_O            1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEY-TENSLIVDGKEIKVFAEPD   79 (332)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEE-CSSEEEETTEEEEEECCSS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEEEcCCChHHhhhhccCcCcCCCcCCcEEE-cCCEEEECCeEEEEEecCC
Confidence            489999999999999999987622579999999998999999999999999999999998 5789999999999999999


Q ss_pred             CCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCC-eEEeecCCCCCCCCCCeEEeecC--Ccc
Q 025797          167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIP-TYVVGVNEKDYDHEVANIVRSWM--KNW  242 (248)
Q Consensus       167 P~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~p-tiV~GVN~~~y~~~~~~IISnAS--~~~  242 (248)
                      |++++|+++|+|+|+||||.|++++.+..|+++|+|||||++|++  |.| ++|||||+++|++. ++||||||  +||
T Consensus        80 p~~l~w~~~~vDvV~~atg~~~s~e~a~~~l~aGakkvVId~~a~--d~p~~~V~eVN~~~i~~~-~~iIsNpsCttn~  155 (332)
T 1hdg_O           80 PSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIITAPAK--GEDITVVIGCNEDQLKPE-HTIISCASCTTNS  155 (332)
T ss_dssp             GGGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCB--SCSEECCTTTTGGGCCTT-CCEEECCCHHHHH
T ss_pred             hHHCcccccCCCEEEECCccchhHHHHHHHHHcCCcEEEEeCCCC--CCCceEEeccCHHHhCCC-CcEEECCccHHHH
Confidence            999999999999999999999999999999999999999999996  578 99999999999875 78999999  787

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=100.00  E-value=4.2e-42  Score=317.96  Aligned_cols=153  Identities=42%  Similarity=0.712  Sum_probs=142.6

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC-CChhhhhhhccccCcCcccC-ceEEEecCCcEEECCeEEEEE
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFK-ADVKIVDNETISVDGKLIKVV  162 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~-~~~e~~ayLLkYDStHGkf~-g~V~v~e~~~L~inGk~I~v~  162 (248)
                      |++||||||||||||.++|++.++  +++++|+|||+ .++++++|||||||+||+|. ++++..+++.|.+||+.|+++
T Consensus         2 m~ikVgI~G~GrIGr~l~R~l~~~--p~vevvaI~d~~~~~~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~i~v~   79 (337)
T 3e5r_O            2 GKIKIGINGFGRIGRLVARVALQS--EDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVF   79 (337)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHTC--SSEEEEEEECSSSCHHHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEEEEEE
T ss_pred             CceEEEEECcCHHHHHHHHHHhCC--CCeEEEEEECCCCCHHHHHHhhcccccCCCCCCCcEEeecCCeeEECCeEEEEE
Confidence            458999999999999999999875  47999999996 89999999999999999999 999863467899999999999


Q ss_pred             ecCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--C
Q 025797          163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--K  240 (248)
Q Consensus       163 ~~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~  240 (248)
                      +++||+++||++.|+|+|+||||.|++++.+..||++|+|||||++|++  |.|++|||||+++|++. ++||||||  +
T Consensus        80 ~~~dp~~l~w~~~~vDvV~eaTg~~~~~e~a~~~l~aGak~VVIs~pa~--d~p~~V~gvN~~~~~~~-~~iIsnpsCtt  156 (337)
T 3e5r_O           80 GIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSK--DAPMFVCGVNEDKYTSD-IDIVSNASCTT  156 (337)
T ss_dssp             CCSCGGGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCS--SSCBCCTTTTGGGCCTT-CCEEECCCHHH
T ss_pred             ecCChHHccccccCCCEEEECCCchhhHHHHHHHHHcCCCEEEEecCCC--CCCEEEeccCHHHhCCC-CcEEECCChHH
Confidence            9999999999999999999999999999999999999999999999996  57999999999999975 78999999  8


Q ss_pred             cc
Q 025797          241 NW  242 (248)
Q Consensus       241 ~~  242 (248)
                      ||
T Consensus       157 ~~  158 (337)
T 3e5r_O          157 NC  158 (337)
T ss_dssp             HH
T ss_pred             HH
Confidence            87

>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O*

Probab=100.00  E-value=7.6e-42  Score=316.72  Aligned_cols=153  Identities=39%  Similarity=0.660  Sum_probs=142.3

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhh---CCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEE
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHG---RKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKV  161 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~---~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v  161 (248)
                      |++||||||||||||.++|++.+   +  +++++|+|||..++++++|||+|||+||+|.++|+. +++.|.+||+.|++
T Consensus         1 M~ikVgI~G~G~iGr~l~r~l~~~~~~--~~~eivai~~~~~~~~~~~ll~~ds~~g~~~~~v~~-~~~~l~v~g~~i~v   77 (339)
T 2x5j_O            1 MTVRVAINGFGRIGRNVVRALYESGRR--AEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRQ-ERDQLFVGDDAIRV   77 (339)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHTSGG--GTEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEE-ETTEEEETTEEEEE
T ss_pred             CCeEEEEECcCHHHHHHHHHHHcCCCC--CCEEEEEEeCCCCHHHHHHHhcccccCCCCCceEEE-cCCeeEECCEEEEE
Confidence            45799999999999999999987   5  479999999999999999999999999999999998 57889999999999


Q ss_pred             EecCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCC-eEEeecCCCCCCCCCCeEEeecC-
Q 025797          162 VSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIP-TYVVGVNEKDYDHEVANIVRSWM-  239 (248)
Q Consensus       162 ~~~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~p-tiV~GVN~~~y~~~~~~IISnAS-  239 (248)
                      ++++||++++|++.|+|+|+||||.|++++.+..||++|+|||||++|+.. |.| ++|||||++.|+++ ++|||||| 
T Consensus        78 ~~~~dp~~l~~~~~~vDvV~e~tg~~~s~e~a~~~l~~GakkVVId~~ad~-d~p~~~V~gvN~~~~~~~-~~iIsnpsC  155 (339)
T 2x5j_O           78 LHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPGSN-DLDATVVYGVNQDQLRAE-HRIVSNASC  155 (339)
T ss_dssp             ECCSSGGGCCHHHHTCSEEEECSSSCCSHHHHHHHHHTTCSEEEESSCCCT-TSSEECCTTTSGGGCCTT-CCEEECCCH
T ss_pred             EecCChHHCcccccCCCEEEECCCccccHHHHHHHHHcCCCEEEEeccccC-CCCceeecccCHHHhcCC-CCEEECCCc
Confidence            999999999999899999999999999999999999999999999999832 578 99999999999975 68999999 


Q ss_pred             -Ccc
Q 025797          240 -KNW  242 (248)
Q Consensus       240 -~~~  242 (248)
                       +||
T Consensus       156 ttn~  159 (339)
T 2x5j_O          156 TTNC  159 (339)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence             787

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=100.00  E-value=1.3e-41  Score=313.84  Aligned_cols=152  Identities=39%  Similarity=0.707  Sum_probs=142.1

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC-CChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEe
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS  163 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~-~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~  163 (248)
                      |++||||||||||||.++|++.++  +++++|+|||+ .+.++++|||+|||+||+|.++++. +++.|.+||+.|++++
T Consensus         2 M~ikVgI~G~G~iGr~~~R~l~~~--~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~-~~~~l~v~g~~i~v~~   78 (335)
T 1u8f_O            2 GKVKVGVNGFGRIGRLVTRAAFNS--GKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKA-ENGKLVINGNPITIFQ   78 (335)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHH--CSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEE-ETTEEEETTEEEEEEC
T ss_pred             CceEEEEEccCHHHHHHHHHHHcC--CCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEE-cCCeEEECCeEEEEEe
Confidence            458999999999999999999875  46999999996 8999999999999999999999998 5778999999999999


Q ss_pred             cCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--Cc
Q 025797          164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--KN  241 (248)
Q Consensus       164 ~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~~  241 (248)
                      ++||++++|++.|+|+|+||||.|++.+.+.+||++|+|+|++|+|.+  |.|++|||||+++|++. ++||||+|  +|
T Consensus        79 ~~d~~~l~~~~~~vDvV~eatg~~~~~e~a~~~l~aGak~V~iSap~~--~~p~~V~gvN~~~~~~~-~~iIsnpsCtt~  155 (335)
T 1u8f_O           79 ERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSA--DAPMFVMGVNHEKYDNS-LKIISNASCTTN  155 (335)
T ss_dssp             CSSGGGCCTTTTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEESSCCS--SSCBCCTTTTGGGCCTT-CSEEECCCHHHH
T ss_pred             cCCHHHCccccCCCCEEEECCCchhhHHHHHHHHhCCCeEEEeccCCC--CCCeEEeccCHHHhCCC-CCEEECCChHHH
Confidence            999999999999999999999999999999999999999999999975  57999999999999875 78999999  78


Q ss_pred             c
Q 025797          242 W  242 (248)
Q Consensus       242 ~  242 (248)
                      |
T Consensus       156 ~  156 (335)
T 1u8f_O          156 C  156 (335)
T ss_dssp             H
T ss_pred             H
Confidence            7

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=99.95  E-value=1.2e-30  Score=241.74  Aligned_cols=139  Identities=19%  Similarity=0.221  Sum_probs=118.9

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhcccc--CcCccc--CceE-EEecCCcEEECCeEE
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYD--SLLGTF--KADV-KIVDNETISVDGKLI  159 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYD--StHGkf--~g~V-~v~e~~~L~inGk~I  159 (248)
                      |++||||||||||||.++|++.++  +++++|+|||. ++++++|||+||  |+||+|  +++| +. +++.|+++|   
T Consensus         1 MmikVgI~G~G~IGr~v~r~l~~~--~~~evvaV~d~-~~~~~~~l~~~dg~s~~g~~~~~~~v~~~-~~~~l~v~~---   73 (343)
T 2yyy_A            1 MPAKVLINGYGSIGKRVADAVSMQ--DDMEVIGVTKT-KPDFEARLAVEKGYKLFVAIPDNERVKLF-EDAGIPVEG---   73 (343)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHS--SSEEEEEEEES-SCSHHHHHHHHTTCCEEESSCCHHHHHHH-HHTTCCCCC---
T ss_pred             CceEEEEECCCHHHHHHHHHHHhC--CCceEEEEecC-CHHHHHHHHHhcCCccccccCCCceeecc-cCCeEEECC---
Confidence            358999999999999999999875  46999999998 599999999999  999999  6776 44 456677777   


Q ss_pred             EEEecCCCCCCCCCCCcccEEecCcccccCchhhh-HHHHcCCCEEEEcCCCCCCCCC-eEEeecCCCCCCCCCCeEEee
Q 025797          160 KVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAG-KHIQAGAKKVIITAPAKGADIP-TYVVGVNEKDYDHEVANIVRS  237 (248)
Q Consensus       160 ~v~~~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~-~HL~~GAKKVIISAPsk~~D~p-tiV~GVN~~~y~~~~~~IISn  237 (248)
                            +|.++.|   |+|+|+||||.+...+.+. .|+++| ++||+|+|.++++.| +||+|||+++|++  ++||||
T Consensus        74 ------~~~~~~~---~vDiV~eatg~~~s~~~a~~~~l~aG-~~VI~sap~~~d~vp~~vV~gvN~~~~~~--~~iIsn  141 (343)
T 2yyy_A           74 ------TILDIIE---DADIVVDGAPKKIGKQNLENIYKPHK-VKAILQGGEKAKDVEDNFNALWSYNRCYG--KDYVRV  141 (343)
T ss_dssp             ------BGGGTGG---GCSEEEECCCTTHHHHHHHHTTTTTT-CEEEECTTSCGGGSSEEECTTTTHHHHTT--CSEEEE
T ss_pred             ------chHHhcc---CCCEEEECCCccccHHHHHHHHHHCC-CEEEECCCccccCCCceEEcccCHHHhcc--CCEEec
Confidence                  4556667   8999999999999888885 999999 779999999741378 9999999999984  589999


Q ss_pred             cC--Ccc
Q 025797          238 WM--KNW  242 (248)
Q Consensus       238 AS--~~~  242 (248)
                      +|  +||
T Consensus       142 ~sCtT~~  148 (343)
T 2yyy_A          142 VSCNTTG  148 (343)
T ss_dssp             CCHHHHH
T ss_pred             cchhhHH
Confidence            99  776

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=99.86  E-value=1.4e-23  Score=191.87  Aligned_cols=139  Identities=19%  Similarity=0.209  Sum_probs=113.3

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhcccc--CcCcccCceEEEecCCcEEECCeEEEEE
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYD--SLLGTFKADVKIVDNETISVDGKLIKVV  162 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYD--StHGkf~g~V~v~e~~~L~inGk~I~v~  162 (248)
                      |++||||+|||+|||.++|++.++  +.+++++|+|. +.+++.++++||  ++||+|.+.+...+++.+.+++      
T Consensus         1 M~irVgIiG~G~iG~~~~r~l~~~--~~~elvav~d~-~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~------   71 (334)
T 2czc_A            1 MKVKVGVNGYGTIGKRVAYAVTKQ--DDMELIGITKT-KPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAG------   71 (334)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHTC--TTEEEEEEEES-SCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSC------
T ss_pred             CCcEEEEEeEhHHHHHHHHHHhcC--CCCEEEEEEcC-CHHHHHHHHHhcCccccccccccceeccCCceEEcC------
Confidence            458999999999999999998865  46999999998 578899999999  9999998876211222333333      


Q ss_pred             ecCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCC-C-CeEEeecCCCCCCCCCCeEEeecC-
Q 025797          163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGAD-I-PTYVVGVNEKDYDHEVANIVRSWM-  239 (248)
Q Consensus       163 ~~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D-~-ptiV~GVN~~~y~~~~~~IISnAS-  239 (248)
                         |++++.|   ++|+|++||+.+...+.+..||++| |+||+++|.+. | . |++|+|||+++|+.  .+||+|+| 
T Consensus        72 ---d~~~l~~---~vDvV~~aTp~~~h~~~a~~~l~aG-k~Vi~sap~~~-d~~~~~~v~~vn~~~~~~--~~ii~~~~C  141 (334)
T 2czc_A           72 ---TLNDLLE---KVDIIVDATPGGIGAKNKPLYEKAG-VKAIFQGGEKA-DVAEVSFVAQANYEAALG--KNYVRVVSC  141 (334)
T ss_dssp             ---BHHHHHT---TCSEEEECCSTTHHHHHHHHHHHHT-CEEEECTTSCG-GGSSEEECHHHHGGGGTT--CSEEEECCH
T ss_pred             ---cHHHhcc---CCCEEEECCCccccHHHHHHHHHcC-CceEeeccccc-ccccceEEeccCHHHHhh--CCcEEecCc
Confidence               4555555   8999999999999889999999999 77999999863 4 3 69999999999985  47999999 


Q ss_pred             -Ccc
Q 025797          240 -KNW  242 (248)
Q Consensus       240 -~~~  242 (248)
                       +||
T Consensus       142 ~t~~  145 (334)
T 2czc_A          142 NTTG  145 (334)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence             776

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=99.84  E-value=2.8e-23  Score=191.22  Aligned_cols=136  Identities=18%  Similarity=0.169  Sum_probs=112.1

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhcccc--CcCcccCceE-EEecCCcEEECCeEEEEEe
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYD--SLLGTFKADV-KIVDNETISVDGKLIKVVS  163 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYD--StHGkf~g~V-~v~e~~~L~inGk~I~v~~  163 (248)
                      +||||+|||||||.++|++.++  +++++++|||. ++++.+++++||  ++||.|.+.+ .. ++..|.+++.      
T Consensus         2 ikVgIiGaG~iG~~l~r~L~~~--~~~elvav~d~-~~~~~~~~~~~~g~~~~~~~~~~v~~~-~~~~l~v~~~------   71 (337)
T 1cf2_P            2 KAVAINGYGTVGKRVADAIAQQ--DDMKVIGVSKT-RPDFEARMALKKGYDLYVAIPERVKLF-EKAGIEVAGT------   71 (337)
T ss_dssp             EEEEEECCSTTHHHHHHHHHTS--SSEEEEEEEES-SCSHHHHHHHHTTCCEEESSGGGHHHH-HHTTCCCCEE------
T ss_pred             eEEEEEeECHHHHHHHHHHHcC--CCcEEEEEEcC-ChhHHHHhcCCcchhhccccccceeee-cCCceEEcCC------
Confidence            7999999999999999998764  46999999997 567889999999  9999998876 32 2344555542      


Q ss_pred             cCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCC--CeEEeecCCCCCCCCCCeEEeecC--
Q 025797          164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADI--PTYVVGVNEKDYDHEVANIVRSWM--  239 (248)
Q Consensus       164 ~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~--ptiV~GVN~~~y~~~~~~IISnAS--  239 (248)
                         ++++.|   ++|+|++|||.+...+.+..|+++|+ +||+++|.++ |.  |++|||||++.|+.  .+||||+|  
T Consensus        72 ---~~~~~~---~vDvV~~atp~~~~~~~a~~~l~aG~-~VId~sp~~~-d~~~~~~V~gvN~e~~~~--~~iIanp~C~  141 (337)
T 1cf2_P           72 ---VDDMLD---EADIVIDCTPEGIGAKNLKMYKEKGI-KAIFQGGEKH-EDIGLSFNSLSNYEESYG--KDYTRVVSCN  141 (337)
T ss_dssp             ---HHHHHH---TCSEEEECCSTTHHHHHHHHHHHHTC-CEEECTTSCH-HHHSCEECHHHHGGGGTT--CSEEEECCHH
T ss_pred             ---HHHHhc---CCCEEEECCCchhhHHHHHHHHHcCC-EEEEecCCCC-ccCCCeEEeeeCHHHhcC--CCEEEcCCcH
Confidence               333333   79999999999999999999999995 5999999853 43  89999999999984  47999999  


Q ss_pred             Ccc
Q 025797          240 KNW  242 (248)
Q Consensus       240 ~~~  242 (248)
                      +||
T Consensus       142 tt~  144 (337)
T 1cf2_P          142 TTG  144 (337)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            665

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=99.81  E-value=3.1e-21  Score=177.82  Aligned_cols=127  Identities=16%  Similarity=0.189  Sum_probs=102.9

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD  166 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~d  166 (248)
                      +||||+|||||||.++|++.++  +.+++++|||. +.++.+++++|+   |                    ++++..++
T Consensus         2 ikVgIiGaG~iG~~~~r~L~~~--p~~elvav~d~-~~~~~~~~a~~~---g--------------------~~~~~~~~   55 (340)
T 1b7g_O            2 VNVAVNGYGTIGKRVADAIIKQ--PDMKLVGVAKT-SPNYEAFIAHRR---G--------------------IRIYVPQQ   55 (340)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTC--TTEEEEEEECS-SCSHHHHHHHHT---T--------------------CCEECCGG
T ss_pred             eEEEEEecCHHHHHHHHHHHcC--CCCEEEEEEcC-ChHHHHHHHHhc---C--------------------cceecCcC
Confidence            7999999999999999998865  57999999997 567888888874   1                    23344445


Q ss_pred             CCCCCCCCC-------------cccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCe
Q 025797          167 PLQLPWAEL-------------GIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVAN  233 (248)
Q Consensus       167 P~~i~W~~~-------------GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~  233 (248)
                      |.++ |.+.             ++|+|+||||.+.+.+.+..|+++|+|+|++|+|.++..+++||+|||++++.+.  +
T Consensus        56 ~~~~-~~~~~v~v~~~~e~l~~~vDvV~~aTp~~~s~~~a~~~~~aG~kvV~~sa~~~~~~~~~~v~~vN~~~~~~~--~  132 (340)
T 1b7g_O           56 SIKK-FEESGIPVAGTVEDLIKTSDIVVDTTPNGVGAQYKPIYLQLQRNAIFQGGEKAEVADISFSALCNYNEALGK--K  132 (340)
T ss_dssp             GHHH-HHTTTCCCCCCHHHHHHHCSEEEECCSTTHHHHHHHHHHHTTCEEEECTTSCGGGSSCEECHHHHHHHHTTC--S
T ss_pred             HHHH-hcccccccccCHhHhhcCCCEEEECCCCchhHHHHHHHHHcCCeEEEeCCCCCCCCCCEEEcCcchHHHcCC--C
Confidence            6555 6521             7999999999999999999999999999999999764334799999997666543  5


Q ss_pred             EEeecC--Ccc
Q 025797          234 IVRSWM--KNW  242 (248)
Q Consensus       234 IISnAS--~~~  242 (248)
                      +|||+|  +||
T Consensus       133 iIsnpsCtt~~  143 (340)
T 1b7g_O          133 YIRVVSCNTTA  143 (340)
T ss_dssp             EEEECCHHHHH
T ss_pred             CcccCCcHHHH
Confidence            999998  665

>2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus}

Probab=99.76  E-value=8e-19  Score=161.21  Aligned_cols=124  Identities=20%  Similarity=0.216  Sum_probs=96.9

Q ss_pred             eeEEEeC-CChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797           87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR  165 (248)
Q Consensus        87 vkV~ING-FGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~  165 (248)
                      +||+||| ||||||.++|++.++.-+.++++             +|...          + .++..|.++|+.+.++.. 
T Consensus         1 mkVaI~GAtG~iG~~llr~L~~~~~~~~~l~-------------~~~s~----------~-~~g~~l~~~g~~i~v~~~-   55 (331)
T 2yv3_A            1 MRVAVVGATGAVGREILKVLEARNFPLSELR-------------LYASP----------R-SAGVRLAFRGEEIPVEPL-   55 (331)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCCE-------------EEECG----------G-GSSCEEEETTEEEEEEEC-
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEE-------------Eeecc----------c-cCCCEEEEcCceEEEEeC-
Confidence            4899999 99999999999986532222222             22111          0 134567789999999887 


Q ss_pred             CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC--CCCCCCeEEeecCCCCCCCCCCeEEeecC--Cc
Q 025797          166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA--KGADIPTYVVGVNEKDYDHEVANIVRSWM--KN  241 (248)
Q Consensus       166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs--k~~D~ptiV~GVN~~~y~~~~~~IISnAS--~~  241 (248)
                      +|+  +|   |+|+|++|||.|.+++.+..|+++|++.|.+|++.  ++ |.|++|+|||++.|+.. ++||||+|  +|
T Consensus        56 ~~~--~~---~~DvV~~a~g~~~s~~~a~~~~~~G~~vId~s~~~R~~~-~~~~~vpevN~~~i~~~-~~iIanp~C~tt  128 (331)
T 2yv3_A           56 PEG--PL---PVDLVLASAGGGISRAKALVWAEGGALVVDNSSAWRYEP-WVPLVVPEVNREKIFQH-RGIIANPNCTTA  128 (331)
T ss_dssp             CSS--CC---CCSEEEECSHHHHHHHHHHHHHHTTCEEEECSSSSTTCT-TSCBCCTTSCGGGGGGC-SSEEECCCHHHH
T ss_pred             Chh--hc---CCCEEEECCCccchHHHHHHHHHCCCEEEECCCccccCC-CCCEEEcCcCHHHhcCC-CCEEECCCHHHH
Confidence            576  68   89999999999999999999999999777777764  32 67999999999999874 57999999  66


Q ss_pred             c
Q 025797          242 W  242 (248)
Q Consensus       242 ~  242 (248)
                      |
T Consensus       129 ~  129 (331)
T 2yv3_A          129 I  129 (331)
T ss_dssp             H
T ss_pred             H
Confidence            6

>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1

Probab=99.72  E-value=4.4e-18  Score=156.66  Aligned_cols=129  Identities=16%  Similarity=0.220  Sum_probs=101.1

Q ss_pred             ceeeEEEeC-CChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEe
Q 025797           85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS  163 (248)
Q Consensus        85 ~~vkV~ING-FGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~  163 (248)
                      |++||+|+| ||+|||.++|.+.++..+.++++++++...             +|+           .+.++|+.+.+. 
T Consensus         5 m~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~-------------~g~-----------~~~~~g~~i~~~-   59 (340)
T 2hjs_A            5 QPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAES-------------AGQ-----------RMGFAESSLRVG-   59 (340)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTT-------------TTC-----------EEEETTEEEECE-
T ss_pred             CCcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCC-------------CCC-----------ccccCCcceEEe-
Confidence            457999999 999999999999866446789999997521             121           122556666664 


Q ss_pred             cCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCC-eEEeecC--C
Q 025797          164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVA-NIVRSWM--K  240 (248)
Q Consensus       164 ~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~-~IISnAS--~  240 (248)
                      +.+|+.  |.  |+|+|++|||.+.+.+.+..|+++|+|+|.+|+|.++.+.|++|++||++.|+..++ +||||++  +
T Consensus        60 ~~~~~~--~~--~~DvV~~a~g~~~s~~~a~~~~~aG~kvId~Sa~~rd~~~~~~vpevN~~~i~~~~~~~iIanp~C~t  135 (340)
T 2hjs_A           60 DVDSFD--FS--SVGLAFFAAAAEVSRAHAERARAAGCSVIDLSGALEPSVAPPVMVSVNAERLASQAAPFLLSSPCAVA  135 (340)
T ss_dssp             EGGGCC--GG--GCSEEEECSCHHHHHHHHHHHHHTTCEEEETTCTTTTTTSCBCCHHHHGGGGGGSCSSCEEECCCHHH
T ss_pred             cCCHHH--hc--CCCEEEEcCCcHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCeEEcCcCHHHHhcCcCCCEEEcCCHHH
Confidence            445654  74  899999999999999999999999999999999987445688888899999985312 7999999  6


Q ss_pred             cc
Q 025797          241 NW  242 (248)
Q Consensus       241 ~~  242 (248)
                      ||
T Consensus       136 t~  137 (340)
T 2hjs_A          136 AE  137 (340)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=99.71  E-value=1.1e-17  Score=153.75  Aligned_cols=128  Identities=23%  Similarity=0.284  Sum_probs=100.0

Q ss_pred             eeeEEEeC-CChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797           86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN  164 (248)
Q Consensus        86 ~vkV~ING-FGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~  164 (248)
                      ++||+|+| ||+|||.++|++.++..+.+++++|++..+.             |+           .+.++|+.+.+ .+
T Consensus         3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~-------------G~-----------~~~~~~~~i~~-~~   57 (336)
T 2r00_A            3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSE-------------GK-----------TYRFNGKTVRV-QN   57 (336)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTT-------------TC-----------EEEETTEEEEE-EE
T ss_pred             ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCC-------------CC-----------ceeecCceeEE-ec
Confidence            47999999 9999999999998763356899999975221             11           12256666766 44


Q ss_pred             CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCC-CCCCCeEEeecCCCCCCCCC-CeEEeecC--C
Q 025797          165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAK-GADIPTYVVGVNEKDYDHEV-ANIVRSWM--K  240 (248)
Q Consensus       165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk-~~D~ptiV~GVN~~~y~~~~-~~IISnAS--~  240 (248)
                      .+|.  +|.  |+|+|++|||.+.+++.+..|+++|++.|.+|++.. +.+.|++|++||++.|++.+ .+||||++  +
T Consensus        58 ~~~~--~~~--~vDvVf~a~g~~~s~~~a~~~~~~G~~vId~s~~~R~~~~~~~~vpevN~~~i~~~~~~~iIanp~C~t  133 (336)
T 2r00_A           58 VEEF--DWS--QVHIALFSAGGELSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAEFRNRNIIANPNCST  133 (336)
T ss_dssp             GGGC--CGG--GCSEEEECSCHHHHHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCTTTCGGGGGGGGGTTEEECCCHHH
T ss_pred             CChH--Hhc--CCCEEEECCCchHHHHHHHHHHHcCCEEEEcCCccccCCCCCeEeccCCHHHhccccCCcEEECCChHH
Confidence            5564  784  899999999999999999999999998777888752 23679999999999998521 46999999  6


Q ss_pred             cc
Q 025797          241 NW  242 (248)
Q Consensus       241 ~~  242 (248)
                      ||
T Consensus       134 t~  135 (336)
T 2r00_A          134 IQ  135 (336)
T ss_dssp             HH
T ss_pred             HH
Confidence            66

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=99.66  E-value=1.1e-18  Score=162.77  Aligned_cols=129  Identities=16%  Similarity=0.106  Sum_probs=100.1

Q ss_pred             eeEEEeC-CChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797           87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR  165 (248)
Q Consensus        87 vkV~ING-FGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~  165 (248)
                      +||+|+| ||+||+.++|.++++  .+++++.|          |+|.||| ||+-   +.       .++|+.+.+....
T Consensus         2 ~kVaIvGAtG~vG~~llr~ll~~--~~~~~v~i----------~~~~~~s-~G~~---v~-------~~~g~~i~~~~~~   58 (367)
T 1t4b_A            2 QNVGFIGWRGMVGSVLMQRMVEE--RDFDAIRP----------VFFSTSQ-LGQA---AP-------SFGGTTGTLQDAF   58 (367)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHT--TGGGGSEE----------EEEESSS-TTSB---CC-------GGGTCCCBCEETT
T ss_pred             cEEEEECCCCHHHHHHHHHHHhc--CCCCeEEE----------EEEEeCC-CCCC---cc-------ccCCCceEEEecC
Confidence            5899999 999999999944442  23444433          6889997 8872   21       1345667777777


Q ss_pred             CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCC---CCCCCeEEeecCCCCCCCCC--C-eEEeecC
Q 025797          166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAK---GADIPTYVVGVNEKDYDHEV--A-NIVRSWM  239 (248)
Q Consensus       166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk---~~D~ptiV~GVN~~~y~~~~--~-~IISnAS  239 (248)
                      +|++  |.  |+|+|++|||.+.+++.+..|+++|+|+|||++|++   ++|.|++|++||++.|+...  . ++|+|++
T Consensus        59 ~~~~--~~--~~DvVf~a~g~~~s~~~a~~~~~~G~k~vVID~ss~~R~~~~~~~~vpevN~~~i~~~~~~g~~~Ianp~  134 (367)
T 1t4b_A           59 DLEA--LK--ALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGLNNGIRTFVGGN  134 (367)
T ss_dssp             CHHH--HH--TCSEEEECSCHHHHHHHHHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTTCCEEEECC
T ss_pred             ChHH--hc--CCCEEEECCCchhHHHHHHHHHHCCCCEEEEcCChhhccCCCCcEEeCCcCHHHHhhhhhcCCCEEEeCC
Confidence            7765  74  899999999999999999999999999999999984   23678999999999997420  1 6999998


Q ss_pred             --Ccc
Q 025797          240 --KNW  242 (248)
Q Consensus       240 --~~~  242 (248)
                        +||
T Consensus       135 Cttt~  139 (367)
T 1t4b_A          135 CTVSL  139 (367)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence              555

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=99.64  E-value=4.5e-17  Score=151.04  Aligned_cols=128  Identities=13%  Similarity=0.123  Sum_probs=99.9

Q ss_pred             eeeEEEeC-CChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797           86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN  164 (248)
Q Consensus        86 ~vkV~ING-FGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~  164 (248)
                      ++||+|+| ||+|||.++|++.++  +.+++++|++..+..     ++||++||+|.+.+ + .+  +.       + .+
T Consensus        16 ~~kV~IiGAtG~iG~~llr~L~~~--p~~elvai~~~~~~g-----~~~~~~~~~~~~~v-~-~d--l~-------~-~~   76 (359)
T 1xyg_A           16 DIRIGLLGASGYTGAEIVRLLANH--PHFQVTLMTADRKAG-----QSMESVFPHLRAQK-L-PT--LV-------S-VK   76 (359)
T ss_dssp             CEEEEEECCSSHHHHHHHHHHHTC--SSEEEEEEBCSTTTT-----SCHHHHCGGGTTSC-C-CC--CB-------C-GG
T ss_pred             CcEEEEECcCCHHHHHHHHHHHcC--CCcEEEEEeCchhcC-----CCHHHhCchhcCcc-c-cc--ce-------e-cc
Confidence            48999999 999999999999875  569999999864332     78999999998764 1 11  11       1 12


Q ss_pred             CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCC------------------CeEEeec---C
Q 025797          165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADI------------------PTYVVGV---N  223 (248)
Q Consensus       165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~------------------ptiV~GV---N  223 (248)
                         ++ .|.  |+|+|++|||.+.+.+.+..| ++|++.|-+|++..- +.                  +++||||   |
T Consensus        77 ---~~-~~~--~vDvVf~atp~~~s~~~a~~~-~aG~~VId~sa~~R~-~~~~~y~~~y~~~~~~~~~l~~~vygvpE~n  148 (359)
T 1xyg_A           77 ---DA-DFS--TVDAVFCCLPHGTTQEIIKEL-PTALKIVDLSADFRL-RNIAEYEEWYGQPHKAVELQKEVVYGLTEIL  148 (359)
T ss_dssp             ---GC-CGG--GCSEEEECCCTTTHHHHHHTS-CTTCEEEECSSTTTC-SCHHHHHHHHSSCCSCHHHHTTCEECCHHHH
T ss_pred             ---hh-Hhc--CCCEEEEcCCchhHHHHHHHH-hCCCEEEECCccccC-CchhhhhhhhcCCcCChhhcCCceEECCccC
Confidence               23 685  899999999999999999999 999976666665432 22                  5899999   9


Q ss_pred             CCCCCCCCCeEEeecC--Ccc
Q 025797          224 EKDYDHEVANIVRSWM--KNW  242 (248)
Q Consensus       224 ~~~y~~~~~~IISnAS--~~~  242 (248)
                      ++.|+.  .+||||++  +||
T Consensus       149 ~~~i~~--~~iIanpgC~tt~  167 (359)
T 1xyg_A          149 REDIKK--ARLVANPGCYPTT  167 (359)
T ss_dssp             HHHHHT--CSEEECCCHHHHH
T ss_pred             HHHhcc--CCEEECCCcHHHH
Confidence            999984  58999999  665

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=99.61  E-value=8.5e-17  Score=148.27  Aligned_cols=137  Identities=15%  Similarity=0.196  Sum_probs=101.1

Q ss_pred             eeeEEEeC-CChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797           86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN  164 (248)
Q Consensus        86 ~vkV~ING-FGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~  164 (248)
                      ++||+|+| +|+|||.++|++.++  +.+++++|++...  .  ---+||++|+.+.       ++.+.++++.+.+ .+
T Consensus         4 ~~kV~IiGAtG~iG~~llr~L~~~--p~~elvai~~s~~--~--~g~~~~~~~~~~~-------~~~~~~~~~~~~~-~~   69 (350)
T 2ep5_A            4 KIKVSLLGSTGMVGQKMVKMLAKH--PYLELVKVSASPS--K--IGKKYKDAVKWIE-------QGDIPEEVQDLPI-VS   69 (350)
T ss_dssp             CEEEEEESCSSHHHHHHHHHHTTC--SSEEEEEEECCGG--G--TTSBHHHHCCCCS-------SSSCCHHHHTCBE-EC
T ss_pred             CcEEEEECcCCHHHHHHHHHHHhC--CCcEEEEEecChh--h--cCCCHHHhcCccc-------ccccccCCceeEE-ee
Confidence            58999999 999999999998765  5799999995310  0  0124789998764       1223333444444 44


Q ss_pred             CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCC---CCCCCeEEeecCCCCCCC-C--------CC
Q 025797          165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAK---GADIPTYVVGVNEKDYDH-E--------VA  232 (248)
Q Consensus       165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk---~~D~ptiV~GVN~~~y~~-~--------~~  232 (248)
                      .+|+.  |  .++|+|++|||.+...+.+..|+++|++  ||++++.   +.|.|++|++||++.|.. +        +.
T Consensus        70 ~d~~~--~--~~vDvVf~atp~~~s~~~a~~~~~aG~~--VId~s~~~R~~~~~~~~vpevn~~~~~~~e~~r~~~~~~~  143 (350)
T 2ep5_A           70 TNYED--H--KDVDVVLSALPNELAESIELELVKNGKI--VVSNASPFRMDPDVPLINPEINWEHLELLKFQKERKGWKG  143 (350)
T ss_dssp             SSGGG--G--TTCSEEEECCCHHHHHHHHHHHHHTTCE--EEECSSTTTTCTTSCBCCHHHHGGGGGGHHHHHHHHTCSS
T ss_pred             CCHHH--h--cCCCEEEECCChHHHHHHHHHHHHCCCE--EEECCccccCCCCCCeeCCccCHHHhcChHhhhhhcccCc
Confidence            46654  6  3899999999999999999999999987  5667763   125799999999999973 1        14


Q ss_pred             eEEeecC--Ccc
Q 025797          233 NIVRSWM--KNW  242 (248)
Q Consensus       233 ~IISnAS--~~~  242 (248)
                      +||||++  +||
T Consensus       144 ~iIanpgC~tt~  155 (350)
T 2ep5_A          144 ILVKNPNCTAAI  155 (350)
T ss_dssp             EEEECCCHHHHH
T ss_pred             eEEEcCchHHHH
Confidence            7999998  555

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=99.61  E-value=2.7e-16  Score=144.94  Aligned_cols=127  Identities=17%  Similarity=0.068  Sum_probs=98.6

Q ss_pred             eeeEEEeC-CChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797           86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN  164 (248)
Q Consensus        86 ~vkV~ING-FGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~  164 (248)
                      ++||+|+| +|+|||.++|++.++  +.+++++|++..+..     .+||++|+.|.+..             .+.+.  
T Consensus         4 ~~kV~IiGAtG~iG~~llr~L~~~--p~~elv~v~s~~~~g-----~~~~~~~~~~~g~~-------------~~~~~--   61 (345)
T 2ozp_A            4 KKTLSIVGASGYAGGEFLRLALSH--PYLEVKQVTSRRFAG-----EPVHFVHPNLRGRT-------------NLKFV--   61 (345)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTC--TTEEEEEEBCSTTTT-----SBGGGTCGGGTTTC-------------CCBCB--
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcC--CCcEEEEEECchhhC-----chhHHhCchhcCcc-------------ccccc--
Confidence            47999999 999999999998865  579999999863322     67999999987530             11111  


Q ss_pred             CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCC-----------------CeEEeec---CC
Q 025797          165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADI-----------------PTYVVGV---NE  224 (248)
Q Consensus       165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~-----------------ptiV~GV---N~  224 (248)
                       +++  .|  .|+|+|++|||.+...+.+..|+++|++.|.+|++..- +.                 +++||||   |+
T Consensus        62 -~~~--~~--~~vDvV~~a~g~~~s~~~a~~~~~aG~~VId~Sa~~r~-~~~~~y~~~y~~h~~~e~l~~~vygvpE~n~  135 (345)
T 2ozp_A           62 -PPE--KL--EPADILVLALPHGVFAREFDRYSALAPVLVDLSADFRL-KDPELYRRYYGEHPRPDLLGRFVYAVPELYR  135 (345)
T ss_dssp             -CGG--GC--CCCSEEEECCCTTHHHHTHHHHHTTCSEEEECSSTTSC-SCHHHHHHHHCCCSSGGGTTSSEECCHHHHH
T ss_pred             -chh--Hh--cCCCEEEEcCCcHHHHHHHHHHHHCCCEEEEcCccccC-CChHHHHhhhccccchhhhccCcEeccccCH
Confidence             222  47  38999999999999999999999999986666766431 22                 5899999   99


Q ss_pred             CCCCCCCCeEEeecC--Ccc
Q 025797          225 KDYDHEVANIVRSWM--KNW  242 (248)
Q Consensus       225 ~~y~~~~~~IISnAS--~~~  242 (248)
                      +.|+.  .+||||++  +||
T Consensus       136 ~~i~~--~~iIanp~C~tt~  153 (345)
T 2ozp_A          136 EALKG--ADWIAGAGCNATA  153 (345)
T ss_dssp             HHHHT--CSEEECCCHHHHH
T ss_pred             HHhhc--CCEEeCCCcHHHH
Confidence            99985  58999999  565

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=99.59  E-value=1.8e-16  Score=145.94  Aligned_cols=139  Identities=19%  Similarity=0.210  Sum_probs=101.1

Q ss_pred             ceeeEEEeC-CChhhHHHHHHHhhCCCCCeEEEEEeC-CCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEE
Q 025797           85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND-SGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVV  162 (248)
Q Consensus        85 ~~vkV~ING-FGRIGRlvlR~~~~~~~~~l~iVaIND-~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~  162 (248)
                      |++||+|+| +|+|||.++|++.++  +.+++++|++ +...     --+||++|+.+...       .+..+++.+.+ 
T Consensus         7 M~~kV~IiGAtG~iG~~llr~L~~~--p~~ev~~i~~s~~~~-----g~~~~~~~~~~~~~-------~~~~~~~~~~~-   71 (354)
T 1ys4_A            7 MKIKVGVLGATGSVGQRFVQLLADH--PMFELTALAASERSA-----GKKYKDACYWFQDR-------DIPENIKDMVV-   71 (354)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTC--SSEEEEEEEECTTTT-----TSBHHHHSCCCCSS-------CCCHHHHTCBC-
T ss_pred             ccceEEEECcCCHHHHHHHHHHhcC--CCCEEEEEEcccccc-----cccHHHhccccccc-------ccccCceeeEE-
Confidence            668999999 999999999998765  4699999985 3211     12358888876311       01112222333 


Q ss_pred             ecCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCC---CCCCCeEEeecCCCCCCC-C--------
Q 025797          163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAK---GADIPTYVVGVNEKDYDH-E--------  230 (248)
Q Consensus       163 ~~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk---~~D~ptiV~GVN~~~y~~-~--------  230 (248)
                      .+.+|++  |.+.|+|+|++|||.+...+.+..|+++|++  ||++|++   +.+.|++|++||++.|.. +        
T Consensus        72 ~~~~~~~--~~~~~~DvV~~atp~~~~~~~a~~~~~aG~~--VId~s~~~R~~~~~~~~vpevn~~~~~~~e~~r~~~~~  147 (354)
T 1ys4_A           72 IPTDPKH--EEFEDVDIVFSALPSDLAKKFEPEFAKEGKL--IFSNASAYRMEEDVPLVIPEVNADHLELIEIQREKRGW  147 (354)
T ss_dssp             EESCTTS--GGGTTCCEEEECCCHHHHHHHHHHHHHTTCE--EEECCSTTTTCTTSCBCCHHHHGGGGGHHHHHHHHHCC
T ss_pred             EeCCHHH--HhcCCCCEEEECCCchHHHHHHHHHHHCCCE--EEECCchhcCCCCCCccCcccCHHHhcChhhhhhhccc
Confidence            3346665  7556899999999999999999999999986  7888874   225789999999999973 1        


Q ss_pred             CCeEEeecC--Ccc
Q 025797          231 VANIVRSWM--KNW  242 (248)
Q Consensus       231 ~~~IISnAS--~~~  242 (248)
                      +.+||||++  +||
T Consensus       148 ~~~iIanpgC~tt~  161 (354)
T 1ys4_A          148 DGAIITNPNCSTIC  161 (354)
T ss_dssp             SSEEEECCCHHHHH
T ss_pred             CCeEEECCCHHHHH
Confidence            146999998  555

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=99.16  E-value=3.9e-12  Score=118.11  Aligned_cols=130  Identities=13%  Similarity=0.032  Sum_probs=95.3

Q ss_pred             eeeEEEeC-CChhhHHHHHHHhhCC-CC--CeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEE
Q 025797           86 KLKVAING-FGRIGRNFLRCWHGRK-DS--PLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKV  161 (248)
Q Consensus        86 ~vkV~ING-FGRIGRlvlR~~~~~~-~~--~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v  161 (248)
                      ++||+|+| +|++|+.++|.+.+++ -+  .+++++++...+..+     +++++|+.|.+...             +.+
T Consensus         9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk-----~~~~~~~~l~~~~~-------------~~~   70 (352)
T 2nqt_A            9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGS-----TLGEHHPHLTPLAH-------------RVV   70 (352)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTS-----BGGGTCTTCGGGTT-------------CBC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCC-----chhhhcccccccce-------------eee
Confidence            47999999 9999999999998652 00  589999986432221     37888888865211             011


Q ss_pred             EecCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCe-------------EEeec-----C
Q 025797          162 VSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPT-------------YVVGV-----N  223 (248)
Q Consensus       162 ~~~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~pt-------------iV~GV-----N  223 (248)
                       .+.+++.  |.  |+|+|+.|+|.+.+.+-+..| ++|++.|.+|+|..- +++.             +||||     |
T Consensus        71 -~~~~~~~--~~--~~DvVf~alg~~~s~~~~~~~-~~G~~vIDlSa~~R~-~~~~~~~~~y~~~h~~~~vyglPEv~~n  143 (352)
T 2nqt_A           71 -EPTEAAV--LG--GHDAVFLALPHGHSAVLAQQL-SPETLIIDCGADFRL-TDAAVWERFYGSSHAGSWPYGLPELPGA  143 (352)
T ss_dssp             -EECCHHH--HT--TCSEEEECCTTSCCHHHHHHS-CTTSEEEECSSTTTC-SCHHHHHHHHSSCCCCCCCBSCTTSTTH
T ss_pred             -ccCCHHH--hc--CCCEEEECCCCcchHHHHHHH-hCCCEEEEECCCccC-CcchhhhhhccccCCCCeeEEecccccC
Confidence             1123332  54  899999999999999999999 999988889999853 3334             59999     9


Q ss_pred             CCCCCCCCCeEEeecC--Ccc
Q 025797          224 EKDYDHEVANIVRSWM--KNW  242 (248)
Q Consensus       224 ~~~y~~~~~~IISnAS--~~~  242 (248)
                      .+.++.  .+||+|++  ++|
T Consensus       144 ~~~i~~--~~iIanPgC~tt~  162 (352)
T 2nqt_A          144 RDQLRG--TRRIAVPGCYPTA  162 (352)
T ss_dssp             HHHHTT--CSEEECCCHHHHH
T ss_pred             HHHHhc--CCEEEcCCHHHHH
Confidence            999974  58999988  444

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=99.10  E-value=2.1e-10  Score=107.27  Aligned_cols=128  Identities=18%  Similarity=0.221  Sum_probs=92.4

Q ss_pred             ceeeEEEeC-CChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEe
Q 025797           85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS  163 (248)
Q Consensus        85 ~~vkV~ING-FGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~  163 (248)
                      |++||+|-| -|.+|+.++|.+.++.-+.++++.+-.....             |           ..+...|+.+.+ .
T Consensus         1 m~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~sa-------------G-----------~~~~~~~~~~~~-~   55 (366)
T 3pwk_A            1 MGYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSA-------------G-----------KSLKFKDQDITI-E   55 (366)
T ss_dssp             -CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTT-------------T-----------CEEEETTEEEEE-E
T ss_pred             CCcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccC-------------C-----------CcceecCCCceE-e
Confidence            568999999 8999999999887753345677766432111             1           111123333333 3


Q ss_pred             cCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCC-CCCCCeEEeecCCCCCCCCCCeEEeecC--C
Q 025797          164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAK-GADIPTYVVGVNEKDYDHEVANIVRSWM--K  240 (248)
Q Consensus       164 ~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk-~~D~ptiV~GVN~~~y~~~~~~IISnAS--~  240 (248)
                      +-++..  |  .++|+|++|||.+.+++.+..|+++|++.|-+|++.. +.|.|++|++||++.|+.. .+||||++  +
T Consensus        56 ~~~~~~--~--~~~Dvvf~a~~~~~s~~~a~~~~~~G~~vIDlSa~~R~~~~~p~~vpevN~~~i~~~-~~iIanpgC~t  130 (366)
T 3pwk_A           56 ETTETA--F--EGVDIALFSAGSSTSAKYAPYAVKAGVVVVDNTSYFRQNPDVPLVVPEVNAHALDAH-NGIIACPNCST  130 (366)
T ss_dssp             ECCTTT--T--TTCSEEEECSCHHHHHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCHHHHGGGGTTC-CSEEECCCHHH
T ss_pred             eCCHHH--h--cCCCEEEECCChHhHHHHHHHHHHCCCEEEEcCCccccCCCceEEEccCCHHHHcCC-CCeEECCCcHH
Confidence            334443  4  3899999999999999999999999998888888751 2367999999999999874 68999998  5


Q ss_pred             cc
Q 025797          241 NW  242 (248)
Q Consensus       241 ~~  242 (248)
                      ||
T Consensus       131 t~  132 (366)
T 3pwk_A          131 IQ  132 (366)
T ss_dssp             HH
T ss_pred             HH
Confidence            55

>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A

Probab=98.90  E-value=4.1e-09  Score=97.81  Aligned_cols=127  Identities=20%  Similarity=0.246  Sum_probs=90.4

Q ss_pred             eeEEEeC-CChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797           87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR  165 (248)
Q Consensus        87 vkV~ING-FGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~  165 (248)
                      +||+|-| -|-.|+-++|++.++.-+.++++.+-....             -|+           .+...|+.+.+ ++-
T Consensus         2 ~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~-------------aG~-----------~~~~~~~~~~~-~~~   56 (344)
T 3tz6_A            2 LSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARS-------------QGR-----------KLAFRGQEIEV-EDA   56 (344)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTT-------------SSC-----------EEEETTEEEEE-EET
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECccc-------------CCC-----------ceeecCCceEE-EeC
Confidence            6899999 799999999998876334567776643210             011           11123444433 333


Q ss_pred             CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC-CCCCCCeEEeecCC-CCCCCCCCeEEeecC--Cc
Q 025797          166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA-KGADIPTYVVGVNE-KDYDHEVANIVRSWM--KN  241 (248)
Q Consensus       166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs-k~~D~ptiV~GVN~-~~y~~~~~~IISnAS--~~  241 (248)
                      +++  .|  .++|+|++|||.+.+++.+..|+++|++.|-+|++- .+.|.|++|++||+ +.|+..+.+||||++  +|
T Consensus        57 ~~~--~~--~~~Dvvf~a~~~~~s~~~a~~~~~~G~~vID~Sa~~R~~~~~p~~vpevN~~~~i~~~~~~iIanpgC~tt  132 (344)
T 3tz6_A           57 ETA--DP--SGLDIALFSAGSAMSKVQAPRFAAAGVTVIDNSSAWRKDPDVPLVVSEVNFERDAHRRPKGIIANPNCTTM  132 (344)
T ss_dssp             TTS--CC--TTCSEEEECSCHHHHHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCTTTSHHHHTTCCTTSEEECCCHHHH
T ss_pred             CHH--Hh--ccCCEEEECCChHHHHHHHHHHHhCCCEEEECCCccccCCCccEEEccCCCHHHhhhcCCCEEECCCcHHH
Confidence            444  34  389999999999999999999999999777777764 12367999999999 999753247999998  65


Q ss_pred             c
Q 025797          242 W  242 (248)
Q Consensus       242 ~  242 (248)
                      |
T Consensus       133 ~  133 (344)
T 3tz6_A          133 A  133 (344)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A

Probab=98.79  E-value=2.5e-10  Score=106.98  Aligned_cols=128  Identities=19%  Similarity=0.095  Sum_probs=87.7

Q ss_pred             eeEEEeCC-ChhhHHHHH-HHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797           87 LKVAINGF-GRIGRNFLR-CWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN  164 (248)
Q Consensus        87 vkV~INGF-GRIGRlvlR-~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~  164 (248)
                      +||||.|- |-.|+-++| ++.+++...++++.+-...--+.+      ..    |.              |+.+.+...
T Consensus         1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~aG~~~------~~----~~--------------~~~~~~~~~   56 (370)
T 3pzr_A            1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPA------PN----FG--------------KDAGMLHDA   56 (370)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBC------CC----SS--------------SCCCBCEET
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccccCcCH------HH----hC--------------CCceEEEec
Confidence            58999995 999999998 887765335677766432100000      00    11              111112222


Q ss_pred             CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCC---CCCCCeEEeecCCCCCCCCC-C--eEEeec
Q 025797          165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAK---GADIPTYVVGVNEKDYDHEV-A--NIVRSW  238 (248)
Q Consensus       165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk---~~D~ptiV~GVN~~~y~~~~-~--~IISnA  238 (248)
                      .+|+.  |  .++|+|++|||.+.+++.+..|+++|+|+|||++|+.   +.|.|++|++||++.|+..+ +  ++|||+
T Consensus        57 ~~~~~--~--~~~Dvvf~a~~~~~s~~~~~~~~~~G~k~~VID~ss~fR~~~~~p~~vpevN~~~i~~~~~~~i~~Ianp  132 (370)
T 3pzr_A           57 FDIES--L--KQLDAVITCQGGSYTEKVYPALRQAGWKGYWIDAASTLRMDKEAIITLDPVNLKQILHGIHHGTKTFVGG  132 (370)
T ss_dssp             TCHHH--H--TTCSEEEECSCHHHHHHHHHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             CChhH--h--ccCCEEEECCChHHHHHHHHHHHHCCCCEEEEeCCchhccCCCCcEEcccCCHHHHhhhhhcCCcEEEcC
Confidence            23332  3  3899999999999999999999999999999999983   33679999999999996420 2  469999


Q ss_pred             C--Ccc
Q 025797          239 M--KNW  242 (248)
Q Consensus       239 S--~~~  242 (248)
                      +  +||
T Consensus       133 ~C~tt~  138 (370)
T 3pzr_A          133 NCTVSL  138 (370)
T ss_dssp             CHHHHH
T ss_pred             ChHHHH
Confidence            8  555

>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis}

Probab=98.73  E-value=4.1e-10  Score=105.82  Aligned_cols=130  Identities=15%  Similarity=0.080  Sum_probs=88.3

Q ss_pred             ceeeEEEeCC-ChhhHHHHH-HHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEE
Q 025797           85 AKLKVAINGF-GRIGRNFLR-CWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVV  162 (248)
Q Consensus        85 ~~vkV~INGF-GRIGRlvlR-~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~  162 (248)
                      .++||||.|- |-.|+-++| ++.+++-..++++.+-.. ..-..     +..    |.+              +.+.+.
T Consensus         3 ~~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~-~aG~~-----~~~----~~~--------------~~~~v~   58 (377)
T 3uw3_A            3 GSMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTS-NAGGK-----APS----FAK--------------NETTLK   58 (377)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESS-CTTSB-----CCT----TCC--------------SCCBCE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEech-hcCCC-----HHH----cCC--------------CceEEE
Confidence            3479999995 999999998 877764334677766432 11000     000    111              111121


Q ss_pred             ecCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCC---CCCCCeEEeecCCCCCCCCC-C--eEEe
Q 025797          163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAK---GADIPTYVVGVNEKDYDHEV-A--NIVR  236 (248)
Q Consensus       163 ~~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk---~~D~ptiV~GVN~~~y~~~~-~--~IIS  236 (248)
                      ...+++.  |  .++|+|++|||.+.+++.+..|+++|+|+|||++|+.   ++|.|++|++||++.|+..+ +  ++||
T Consensus        59 ~~~~~~~--~--~~vDvvf~a~~~~~s~~~~~~~~~~G~k~~VID~ss~fR~~~~~p~~vpevN~~~i~~~~~~~i~~Ia  134 (377)
T 3uw3_A           59 DATSIDD--L--KKCDVIITCQGGDYTNDVFPKLRAAGWNGYWIDAASSLRMKDDAVIILDPVNLNVIKDALVNGTKNFI  134 (377)
T ss_dssp             ETTCHHH--H--HTCSEEEECSCHHHHHHHHHHHHHTTCCSEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTTCCEEE
T ss_pred             eCCChhH--h--cCCCEEEECCChHHHHHHHHHHHHCCCCEEEEeCCcccccCCCCceECCcCCHHHHhhhhhcCCcEEE
Confidence            1222322  3  3899999999999999999999999999999999983   33679999999999996420 2  4599


Q ss_pred             ecC--Ccc
Q 025797          237 SWM--KNW  242 (248)
Q Consensus       237 nAS--~~~  242 (248)
                      |++  +||
T Consensus       135 np~C~tt~  142 (377)
T 3uw3_A          135 GGNCTVSL  142 (377)
T ss_dssp             ECCHHHHH
T ss_pred             cCCHHHHH
Confidence            998  554

>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*

Probab=98.69  E-value=1e-08  Score=95.44  Aligned_cols=137  Identities=18%  Similarity=0.288  Sum_probs=90.9

Q ss_pred             ceeeEEEeC-CChhhHHHHHHHhhCCCCCeEEEEEeCC--CChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEE
Q 025797           85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDS--GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKV  161 (248)
Q Consensus        85 ~~vkV~ING-FGRIGRlvlR~~~~~~~~~l~iVaIND~--~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v  161 (248)
                      +++||+|-| -|-+|+-++|++.++  +.++++.+-..  .+ +.+...+.+- .|..+...++   +         +.+
T Consensus         6 ~~~kVaIvGATGyvG~eLlrlL~~h--P~~el~~l~S~~saG-k~~~~~~p~~-~~~~~~~~~~---~---------~~v   69 (359)
T 4dpl_A            6 RTLKAAILGATGLVGIEYVRMLSNH--PYIKPAYLAGKGSVG-KPYGEVVRWQ-TVGQVPKEIA---D---------MEI   69 (359)
T ss_dssp             CCEEEEETTTTSTTHHHHHHHHTTC--SSEEEEEEEESTTTT-SBHHHHCCCC-SSSCCCHHHH---T---------CBC
T ss_pred             CCCeEEEECCCCHHHHHHHHHHHhC--CCceEEEEECchhcC-CChhHhcccc-cccccccccc---c---------ceE
Confidence            458999999 699999999987765  46788877433  12 1222111110 0111110000   0         011


Q ss_pred             EecCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCC-CCCCCeEEeecCCCCCCC--C-------C
Q 025797          162 VSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAK-GADIPTYVVGVNEKDYDH--E-------V  231 (248)
Q Consensus       162 ~~~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk-~~D~ptiV~GVN~~~y~~--~-------~  231 (248)
                       ++-+++.  |  .++|+|++|||.+.+++.+..|+++|++.|.+|++.. +++.|.+|.+||++.|+.  .       +
T Consensus        70 -~~~~~~~--~--~~vDvvf~a~p~~~s~~~a~~~~~~G~~vIDlSa~~R~~~~~p~~vpEvN~~~i~~i~~~~~~~~~~  144 (359)
T 4dpl_A           70 -KPTDPKL--M--DDVDIIFSPLPQGAAGPVEEQFAKEGFPVISNSPDHRFDPDVPLLVPELNPHTISLIDEQRKRREWK  144 (359)
T ss_dssp             -EECCGGG--C--TTCCEEEECCCTTTHHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCTTTCGGGGGHHHHHHHHHTCS
T ss_pred             -EeCCHHH--h--cCCCEEEECCChHHHHHHHHHHHHCCCEEEEcCCCccCCCCccEEEcCCCHHHHhhHhhcccccccC
Confidence             1223433  3  3899999999999999999999999999999999974 336789999999999853  1       0


Q ss_pred             CeEEeecC--Ccc
Q 025797          232 ANIVRSWM--KNW  242 (248)
Q Consensus       232 ~~IISnAS--~~~  242 (248)
                      .+||||++  +||
T Consensus       145 ~~iIanPgC~tt~  157 (359)
T 4dpl_A          145 GFIVTTPLCTAQG  157 (359)
T ss_dssp             SEEEECCCHHHHH
T ss_pred             ccEEECCCcHHHH
Confidence            25999998  554

>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*

Probab=98.69  E-value=1e-08  Score=95.44  Aligned_cols=137  Identities=18%  Similarity=0.288  Sum_probs=90.9

Q ss_pred             ceeeEEEeC-CChhhHHHHHHHhhCCCCCeEEEEEeCC--CChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEE
Q 025797           85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDS--GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKV  161 (248)
Q Consensus        85 ~~vkV~ING-FGRIGRlvlR~~~~~~~~~l~iVaIND~--~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v  161 (248)
                      +++||+|-| -|-+|+-++|++.++  +.++++.+-..  .+ +.+...+.+- .|..+...++   +         +.+
T Consensus         6 ~~~kVaIvGATGyvG~eLlrlL~~h--P~~el~~l~S~~saG-k~~~~~~p~~-~~~~~~~~~~---~---------~~v   69 (359)
T 4dpk_A            6 RTLKAAILGATGLVGIEYVRMLSNH--PYIKPAYLAGKGSVG-KPYGEVVRWQ-TVGQVPKEIA---D---------MEI   69 (359)
T ss_dssp             CCEEEEETTTTSTTHHHHHHHHTTC--SSEEEEEEEESTTTT-SBHHHHCCCC-SSSCCCHHHH---T---------CBC
T ss_pred             CCCeEEEECCCCHHHHHHHHHHHhC--CCceEEEEECchhcC-CChhHhcccc-cccccccccc---c---------ceE
Confidence            458999999 699999999987765  46788877433  12 1222111110 0111110000   0         011


Q ss_pred             EecCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCC-CCCCCeEEeecCCCCCCC--C-------C
Q 025797          162 VSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAK-GADIPTYVVGVNEKDYDH--E-------V  231 (248)
Q Consensus       162 ~~~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk-~~D~ptiV~GVN~~~y~~--~-------~  231 (248)
                       ++-+++.  |  .++|+|++|||.+.+++.+..|+++|++.|.+|++.. +++.|.+|.+||++.|+.  .       +
T Consensus        70 -~~~~~~~--~--~~vDvvf~a~p~~~s~~~a~~~~~~G~~vIDlSa~~R~~~~~p~~vpEvN~~~i~~i~~~~~~~~~~  144 (359)
T 4dpk_A           70 -KPTDPKL--M--DDVDIIFSPLPQGAAGPVEEQFAKEGFPVISNSPDHRFDPDVPLLVPELNPHTISLIDEQRKRREWK  144 (359)
T ss_dssp             -EECCGGG--C--TTCCEEEECCCTTTHHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCTTTCGGGGGHHHHHHHHHTCS
T ss_pred             -EeCCHHH--h--cCCCEEEECCChHHHHHHHHHHHHCCCEEEEcCCCccCCCCccEEEcCCCHHHHhhHhhcccccccC
Confidence             1223433  3  3899999999999999999999999999999999974 336789999999999853  1       0


Q ss_pred             CeEEeecC--Ccc
Q 025797          232 ANIVRSWM--KNW  242 (248)
Q Consensus       232 ~~IISnAS--~~~  242 (248)
                      .+||||++  +||
T Consensus       145 ~~iIanPgC~tt~  157 (359)
T 4dpk_A          145 GFIVTTPLCTAQG  157 (359)
T ss_dssp             SEEEECCCHHHHH
T ss_pred             ccEEECCCcHHHH
Confidence            25999998  554

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=98.60  E-value=6.8e-09  Score=96.00  Aligned_cols=129  Identities=18%  Similarity=0.206  Sum_probs=87.2

Q ss_pred             eeEEEeC-CChhhHHHHHHHhhCCCCCeEEEEEeCCC---Ch-hhhhhhccccCcCcccCceEEEecCCcEEECCeEEEE
Q 025797           87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSG---GV-KNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKV  161 (248)
Q Consensus        87 vkV~ING-FGRIGRlvlR~~~~~~~~~l~iVaIND~~---~~-e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v  161 (248)
                      +||+|.| -|.+|+.++|++.++  +.++++.+-...   .. +.+      ..+|..|.+...             +.+
T Consensus         5 ~kv~IvGatG~vG~~l~~~L~~~--p~~el~~l~s~~~~~saGk~~------~~~~p~~~~~~~-------------~~v   63 (337)
T 3dr3_A            5 LNTLIVGASGYAGAELVTYVNRH--PHMNITALTVSAQSNDAGKLI------SDLHPQLKGIVE-------------LPL   63 (337)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHC--TTEEEEEEEEETTCTTTTSBH------HHHCGGGTTTCC-------------CBE
T ss_pred             eEEEEECCCChHHHHHHHHHHhC--CCCcEEEEEecCchhhcCCch------HHhCccccCccc-------------eeE
Confidence            7999999 699999999988875  457777663221   11 111      112333332100             011


Q ss_pred             EecC-CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCC--CCCC---------------CeEEeec-
Q 025797          162 VSNR-DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAK--GADI---------------PTYVVGV-  222 (248)
Q Consensus       162 ~~~~-dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk--~~D~---------------ptiV~GV-  222 (248)
                       ++- ++++  |. .++|+|++|||.+.+++.+..|+++|++.|-+|++-.  +.|.               +++|||| 
T Consensus        64 -~~~~~~~~--~~-~~~Dvvf~a~p~~~s~~~~~~~~~~g~~vIDlSa~fR~~d~~v~~~wy~~~~~~p~l~~~~vyglP  139 (337)
T 3dr3_A           64 -QPMSDISE--FS-PGVDVVFLATAHEVSHDLAPQFLEAGCVVFDLSGAFRVNDATFYEKYYGFTHQYPELLEQAAYGLA  139 (337)
T ss_dssp             -EEESSGGG--TC-TTCSEEEECSCHHHHHHHHHHHHHTTCEEEECSSTTSSSCHHHHHHHTSSCCSCHHHHHHCEECCT
T ss_pred             -eccCCHHH--Hh-cCCCEEEECCChHHHHHHHHHHHHCCCEEEEcCCccccCCcccchhhccccccChhhhcceEEEcc
Confidence             111 3332  31 3799999999999999999999999999999999863  2122               2679999 


Q ss_pred             --CCCCCCCCCCeEEeecC--Ccc
Q 025797          223 --NEKDYDHEVANIVRSWM--KNW  242 (248)
Q Consensus       223 --N~~~y~~~~~~IISnAS--~~~  242 (248)
                        |++.++.  .+||||++  +||
T Consensus       140 Evn~~~i~~--~~iIanPgC~tt~  161 (337)
T 3dr3_A          140 EWCGNKLKE--ANLIAVPGCYPTA  161 (337)
T ss_dssp             TTCCHHHHT--CSEEECCCHHHHH
T ss_pred             ccCHHHhCC--CCEEecCChHHHH
Confidence              9999974  58999998  444

>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}

Probab=98.20  E-value=2.8e-06  Score=79.83  Aligned_cols=135  Identities=21%  Similarity=0.269  Sum_probs=88.5

Q ss_pred             ceeeEEEeC-CChhhHHHHHHHhhCCCCCeEEEEEeC-C--CChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEE
Q 025797           85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND-S--GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIK  160 (248)
Q Consensus        85 ~~vkV~ING-FGRIGRlvlR~~~~~~~~~l~iVaIND-~--~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~  160 (248)
                      +++||+|-| -|-.|+-++|++.++  +.++++.+-. .  .+- .+...+       +|......-.+      ++.+ 
T Consensus        18 ~~~kVaIvGAtG~vG~ell~lL~~h--p~~el~~l~aS~~saGk-~~~~~~-------~~~~~~~~p~~------~~~~-   80 (381)
T 3hsk_A           18 SVKKAGVLGATGSVGQRFILLLSKH--PEFEIHALGASSRSAGK-KYKDAA-------SWKQTETLPET------EQDI-   80 (381)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTC--SSEEEEEEEECTTTTTS-BHHHHC-------CCCCSSCCCHH------HHTC-
T ss_pred             CccEEEEECCCChHHHHHHHHHHcC--CCceEEEeeccccccCC-CHHHhc-------ccccccccccc------cccc-
Confidence            468999999 699999999988776  4578877632 2  221 121111       11100000000      0001 


Q ss_pred             EEecCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCC-CCCCCeEEeecCCCCCC-----------
Q 025797          161 VVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAK-GADIPTYVVGVNEKDYD-----------  228 (248)
Q Consensus       161 v~~~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk-~~D~ptiV~GVN~~~y~-----------  228 (248)
                      .+++-++.+ .|  .++|+|+.|+|.+..++-+..|+++|++.|-+|++-. +.|.|++|.+||.+.|.           
T Consensus        81 ~v~~~~~~~-~~--~~~Dvvf~alp~~~s~~~~~~~~~~G~~VIDlSa~fR~~~~vplvv~~vn~~~~~l~E~~r~~~~~  157 (381)
T 3hsk_A           81 VVQECKPEG-NF--LECDVVFSGLDADVAGDIEKSFVEAGLAVVSNAKNYRREKDVPLVVPIVNPEHIDVVENKVKQAVS  157 (381)
T ss_dssp             BCEESSSCT-TG--GGCSEEEECCCHHHHHHHHHHHHHTTCEEEECCSTTTTCTTSCEECTTTCGGGGHHHHHHHHHHHH
T ss_pred             eEEeCchhh-hc--ccCCEEEECCChhHHHHHHHHHHhCCCEEEEcCCcccCCCCCcEEecccCHHHcCCHhhhhhhhcc
Confidence            112223331 34  3799999999999999999999999999999999863 33679999999999885           


Q ss_pred             ---CCCCeEEeecC
Q 025797          229 ---HEVANIVRSWM  239 (248)
Q Consensus       229 ---~~~~~IISnAS  239 (248)
                         -.+.+||+|++
T Consensus       158 ~~~i~~~~iIaNPg  171 (381)
T 3hsk_A          158 KGGKKPGFIICISN  171 (381)
T ss_dssp             TTCCCCCEEEEECC
T ss_pred             cccccCCcEEECCC
Confidence               12257999987

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=97.77  E-value=3.2e-05  Score=69.66  Aligned_cols=90  Identities=19%  Similarity=0.199  Sum_probs=63.6

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN  164 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~  164 (248)
                      +++||+|.|+|+||+.+++.+...  +.+++|+|-|+...+.+    .    +|     +.               +  .
T Consensus         2 ~~irV~IiG~G~mG~~~~~~l~~~--~~~elvav~d~~~~~~~----~----~g-----v~---------------~--~   49 (320)
T 1f06_A            2 TNIRVAIVGYGNLGRSVEKLIAKQ--PDMDLVGIFSRRATLDT----K----TP-----VF---------------D--V   49 (320)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHTTC--SSEEEEEEEESSSCCSS----S----SC-----EE---------------E--G
T ss_pred             CCCEEEEEeecHHHHHHHHHHhcC--CCCEEEEEEcCCHHHhh----c----CC-----Cc---------------e--e
Confidence            358999999999999999988653  46999999886322211    1    11     11               1  1


Q ss_pred             CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                      .|++++-   .++|+||+||.-+...+.+...|++| +.||++.|.
T Consensus        50 ~d~~~ll---~~~DvViiatp~~~h~~~~~~al~aG-~~Vv~ekp~   91 (320)
T 1f06_A           50 ADVDKHA---DDVDVLFLCMGSATDIPEQAPKFAQF-ACTVDTYDN   91 (320)
T ss_dssp             GGGGGTT---TTCSEEEECSCTTTHHHHHHHHHTTT-SEEECCCCC
T ss_pred             CCHHHHh---cCCCEEEEcCCcHHHHHHHHHHHHCC-CEEEECCCC
Confidence            2334443   37899999999887778888888877 468888885

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=97.21  E-value=0.00044  Score=61.82  Aligned_cols=89  Identities=17%  Similarity=0.140  Sum_probs=59.2

Q ss_pred             eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797           86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR  165 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~  165 (248)
                      ++||+|.|+|+||+.+++.+...  +.+++++|-|. +.+.+..       +|- .                   +....
T Consensus         9 ~irv~IIG~G~iG~~~~~~l~~~--~~~elvav~d~-~~~~~~~-------~g~-~-------------------~~~~~   58 (304)
T 3bio_A            9 KIRAAIVGYGNIGRYALQALREA--PDFEIAGIVRR-NPAEVPF-------ELQ-P-------------------FRVVS   58 (304)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHC--TTEEEEEEECC---------------CCT-T-------------------SCEES
T ss_pred             CCEEEEECChHHHHHHHHHHhcC--CCCEEEEEEcC-CHHHHHH-------cCC-C-------------------cCCHH
Confidence            58999999999999999987653  46999999887 2332211       121 0                   00011


Q ss_pred             CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCC
Q 025797          166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP  209 (248)
Q Consensus       166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAP  209 (248)
                      +..+.    .++|+|+.||......+-+..-|++| |.||+..|
T Consensus        59 ~l~~~----~~~DvViiatp~~~h~~~~~~al~aG-~~Vi~ekP   97 (304)
T 3bio_A           59 DIEQL----ESVDVALVCSPSREVERTALEILKKG-ICTADSFD   97 (304)
T ss_dssp             SGGGS----SSCCEEEECSCHHHHHHHHHHHHTTT-CEEEECCC
T ss_pred             HHHhC----CCCCEEEECCCchhhHHHHHHHHHcC-CeEEECCC
Confidence            22222    36899999999988888888888877 46777666

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=97.03  E-value=0.00076  Score=57.49  Aligned_cols=32  Identities=19%  Similarity=0.444  Sum_probs=26.9

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS  121 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~  121 (248)
                      +||+|.|+|+||+.+++.+..   ..+++++|-|.
T Consensus         1 m~vgiIG~G~mG~~~~~~l~~---~g~~lv~v~d~   32 (236)
T 2dc1_A            1 MLVGLIGYGAIGKFLAEWLER---NGFEIAAILDV   32 (236)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH---TTCEEEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHhc---CCCEEEEEEec
Confidence            489999999999999998763   35898888776

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=96.90  E-value=0.00097  Score=58.82  Aligned_cols=33  Identities=18%  Similarity=0.411  Sum_probs=28.5

Q ss_pred             eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797           86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS  121 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~  121 (248)
                      ++||+|.|+||+||.+++++.++  +. ++|++-|.
T Consensus         3 MmkI~ViGaGrMG~~i~~~l~~~--~~-eLva~~d~   35 (243)
T 3qy9_A            3 SMKILLIGYGAMNQRVARLAEEK--GH-EIVGVIEN   35 (243)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TC-EEEEEECS
T ss_pred             ceEEEEECcCHHHHHHHHHHHhC--CC-EEEEEEec
Confidence            37999999999999999998875  35 89998776

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=96.77  E-value=0.0015  Score=58.18  Aligned_cols=99  Identities=19%  Similarity=0.197  Sum_probs=62.6

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN  164 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~  164 (248)
                      |++||||.|+|+||+..++.+...+..++++++|-|. +.+....+-+.   ||   .. ++               +  
T Consensus         1 M~~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~-~~~~a~~~a~~---~~---~~-~~---------------~--   55 (334)
T 3ohs_X            1 MALRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAAR-DLSRAKEFAQK---HD---IP-KA---------------Y--   55 (334)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECS-SHHHHHHHHHH---HT---CS-CE---------------E--
T ss_pred             CccEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcC-CHHHHHHHHHH---cC---CC-cc---------------c--
Confidence            5689999999999999998876543345899999987 33333222110   11   00 00               0  


Q ss_pred             CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                      .|.+++- .+-.+|+|+-||--....+-+..-|++| |.|++--|-
T Consensus        56 ~~~~~ll-~~~~vD~V~i~tp~~~H~~~~~~al~~G-khVl~EKP~   99 (334)
T 3ohs_X           56 GSYEELA-KDPNVEVAYVGTQHPQHKAAVMLCLAAG-KAVLCEKPM   99 (334)
T ss_dssp             SSHHHHH-HCTTCCEEEECCCGGGHHHHHHHHHHTT-CEEEEESSS
T ss_pred             CCHHHHh-cCCCCCEEEECCCcHHHHHHHHHHHhcC-CEEEEECCC
Confidence            0111110 1236899999998877777777778888 678887774

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=96.62  E-value=0.0018  Score=57.78  Aligned_cols=97  Identities=20%  Similarity=0.257  Sum_probs=62.6

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN  164 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~  164 (248)
                      |++||+|.|+|+||+..++.+...  +.+++++|-|. +.+.+..+.+.   +|   .. ++               +  
T Consensus         1 M~~rvgiIG~G~~g~~~~~~l~~~--~~~~l~av~d~-~~~~~~~~~~~---~~---~~-~~---------------~--   53 (344)
T 3ezy_A            1 MSLRIGVIGLGRIGTIHAENLKMI--DDAILYAISDV-REDRLREMKEK---LG---VE-KA---------------Y--   53 (344)
T ss_dssp             -CEEEEEECCSHHHHHHHHHGGGS--TTEEEEEEECS-CHHHHHHHHHH---HT---CS-EE---------------E--
T ss_pred             CeeEEEEEcCCHHHHHHHHHHHhC--CCcEEEEEECC-CHHHHHHHHHH---hC---CC-ce---------------e--
Confidence            568999999999999999987653  46999999987 33333222111   11   00 00               0  


Q ss_pred             CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                      .|++++ ..+..+|+|+-||--....+-+..-|++| |.|++--|.
T Consensus        54 ~~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~~g-k~v~~EKP~   97 (344)
T 3ezy_A           54 KDPHEL-IEDPNVDAVLVCSSTNTHSELVIACAKAK-KHVFCEKPL   97 (344)
T ss_dssp             SSHHHH-HHCTTCCEEEECSCGGGHHHHHHHHHHTT-CEEEEESCS
T ss_pred             CCHHHH-hcCCCCCEEEEcCCCcchHHHHHHHHhcC-CeEEEECCC
Confidence            111111 01226899999999887777777778888 678887773

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=96.58  E-value=0.00055  Score=62.19  Aligned_cols=35  Identities=20%  Similarity=0.479  Sum_probs=30.1

Q ss_pred             ceeeEEEeC-CChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797           85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDS  121 (248)
Q Consensus        85 ~~vkV~ING-FGRIGRlvlR~~~~~~~~~l~iVaIND~  121 (248)
                      +++||+|+| +||+||.++|++.+.  +++++|++-|.
T Consensus        20 ~~irV~V~Ga~GrMGr~i~~~v~~~--~~~eLvg~vd~   55 (288)
T 3ijp_A           20 GSMRLTVVGANGRMGRELITAIQRR--KDVELCAVLVR   55 (288)
T ss_dssp             -CEEEEESSTTSHHHHHHHHHHHTC--SSEEEEEEBCC
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEec
Confidence            468999999 999999999988754  57999999876

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=96.54  E-value=0.0025  Score=56.25  Aligned_cols=74  Identities=24%  Similarity=0.376  Sum_probs=48.0

Q ss_pred             eeEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEEeCC-CChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797           87 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN  164 (248)
Q Consensus        87 vkV~INGF-GRIGRlvlR~~~~~~~~~l~iVaIND~-~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~  164 (248)
                      +||+|+|. ||+||.+.+.+.+.  +.+++|++-|. .+++.   ++..       ..+|-+|                .
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~--~~~elva~~d~~~dl~~---~~~~-------~~DvvID----------------f   52 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAA--DDLTLSAELDAGDPLSL---LTDG-------NTEVVID----------------F   52 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHC--TTCEEEEEECTTCCTHH---HHHT-------TCCEEEE----------------C
T ss_pred             CEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEccCCCHHH---Hhcc-------CCcEEEE----------------c
Confidence            48999996 99999999987654  35899988876 34432   2221       1234432                1


Q ss_pred             CCCCC----CCC-CCCcccEEecCcccccC
Q 025797          165 RDPLQ----LPW-AELGIDIVIEGTGVFVD  189 (248)
Q Consensus       165 ~dP~~----i~W-~~~GidiVVE~TG~F~~  189 (248)
                      -.|+.    +.+ .+.|+++|+.+|| |.+
T Consensus        53 T~p~a~~~~~~~a~~~g~~~VigTTG-~~~   81 (245)
T 1p9l_A           53 THPDVVMGNLEFLIDNGIHAVVGTTG-FTA   81 (245)
T ss_dssp             SCTTTHHHHHHHHHHTTCEEEECCCC-CCH
T ss_pred             cChHHHHHHHHHHHHcCCCEEEcCCC-CCH
Confidence            13432    223 4679999999999 544

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=96.52  E-value=0.0056  Score=54.18  Aligned_cols=94  Identities=21%  Similarity=0.271  Sum_probs=62.3

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN  164 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~  164 (248)
                      |++||+|.|+|+||+..++.+...  +.+++++|-|. +.+.+..+-+.      |...  .                  
T Consensus         2 m~~~vgiiG~G~~g~~~~~~l~~~--~~~~l~av~d~-~~~~~~~~~~~------~~~~--~------------------   52 (331)
T 4hkt_A            2 MTVRFGLLGAGRIGKVHAKAVSGN--ADARLVAVADA-FPAAAEAIAGA------YGCE--V------------------   52 (331)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHC--TTEEEEEEECS-SHHHHHHHHHH------TTCE--E------------------
T ss_pred             CceEEEEECCCHHHHHHHHHHhhC--CCcEEEEEECC-CHHHHHHHHHH------hCCC--c------------------
Confidence            678999999999999999987654  46999999988 33333222211      1111  1                  


Q ss_pred             CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCC
Q 025797          165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP  209 (248)
Q Consensus       165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAP  209 (248)
                      .|++++ ..+-.+|+|+-||--....+-+..-|++| |.|++--|
T Consensus        53 ~~~~~~-l~~~~~D~V~i~tp~~~h~~~~~~al~~g-k~v~~EKP   95 (331)
T 4hkt_A           53 RTIDAI-EAAADIDAVVICTPTDTHADLIERFARAG-KAIFCEKP   95 (331)
T ss_dssp             CCHHHH-HHCTTCCEEEECSCGGGHHHHHHHHHHTT-CEEEECSC
T ss_pred             CCHHHH-hcCCCCCEEEEeCCchhHHHHHHHHHHcC-CcEEEecC
Confidence            111111 01226899999998877777777778887 67888767

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=96.48  E-value=0.0031  Score=55.87  Aligned_cols=97  Identities=18%  Similarity=0.164  Sum_probs=61.2

Q ss_pred             ceeeEEEeCCChhhHHHHHHHh-hCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEe
Q 025797           85 AKLKVAINGFGRIGRNFLRCWH-GRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS  163 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~-~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~  163 (248)
                      .++||+|.|+|+||+..++.+. ..  ..+++|+|-|. +.+.+..+-+   .+|   .. .+               + 
T Consensus         7 ~~~~v~iiG~G~ig~~~~~~l~~~~--~~~~~vav~d~-~~~~~~~~a~---~~g---~~-~~---------------~-   60 (346)
T 3cea_A            7 KPLRAAIIGLGRLGERHARHLVNKI--QGVKLVAACAL-DSNQLEWAKN---ELG---VE-TT---------------Y-   60 (346)
T ss_dssp             CCEEEEEECCSTTHHHHHHHHHHTC--SSEEEEEEECS-CHHHHHHHHH---TTC---CS-EE---------------E-
T ss_pred             CcceEEEEcCCHHHHHHHHHHHhcC--CCcEEEEEecC-CHHHHHHHHH---HhC---CC-cc---------------c-
Confidence            4589999999999999988876 32  46899999887 3333321111   011   10 11               1 


Q ss_pred             cCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       164 ~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                       .|++++- .+.++|+|+.||.-....+-+..-|++| |.|++--|.
T Consensus        61 -~~~~~~l-~~~~~D~V~i~tp~~~h~~~~~~al~~G-~~v~~eKp~  104 (346)
T 3cea_A           61 -TNYKDMI-DTENIDAIFIVAPTPFHPEMTIYAMNAG-LNVFCEKPL  104 (346)
T ss_dssp             -SCHHHHH-TTSCCSEEEECSCGGGHHHHHHHHHHTT-CEEEECSCC
T ss_pred             -CCHHHHh-cCCCCCEEEEeCChHhHHHHHHHHHHCC-CEEEEcCCC
Confidence             1122110 1136899999999887777777778887 567765553

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=96.40  E-value=0.0021  Score=57.52  Aligned_cols=82  Identities=18%  Similarity=0.249  Sum_probs=53.0

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN  164 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~  164 (248)
                      ..+||+|.|||.|||.++|.   +   .++++++-+    ++.          |.+               |    +...
T Consensus        11 ~~~rV~i~G~GaIG~~v~~~---~---~leLv~v~~----~k~----------gel---------------g----v~a~   51 (253)
T 1j5p_A           11 HHMTVLIIGMGNIGKKLVEL---G---NFEKIYAYD----RIS----------KDI---------------P----GVVR   51 (253)
T ss_dssp             CCCEEEEECCSHHHHHHHHH---S---CCSEEEEEC----SSC----------CCC---------------S----SSEE
T ss_pred             ccceEEEECcCHHHHHHHhc---C---CcEEEEEEe----ccc----------ccc---------------C----ceee
Confidence            45799999999999999997   2   588888765    211          111               1    1112


Q ss_pred             CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCC
Q 025797          165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP  209 (248)
Q Consensus       165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAP  209 (248)
                      .|.+++..   ..|+||||.+..--.+-..+-|++|.. |+++++
T Consensus        52 ~d~d~lla---~pD~VVe~A~~~av~e~~~~iL~aG~d-vv~~S~   92 (253)
T 1j5p_A           52 LDEFQVPS---DVSTVVECASPEAVKEYSLQILKNPVN-YIIIST   92 (253)
T ss_dssp             CSSCCCCT---TCCEEEECSCHHHHHHHHHHHTTSSSE-EEECCG
T ss_pred             CCHHHHhh---CCCEEEECCCHHHHHHHHHHHHHCCCC-EEEcCh
Confidence            35666652   678999998877555555666667765 444444

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=96.35  E-value=0.0056  Score=54.46  Aligned_cols=34  Identities=24%  Similarity=0.442  Sum_probs=28.4

Q ss_pred             eeeEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797           86 KLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDS  121 (248)
Q Consensus        86 ~vkV~INGF-GRIGRlvlR~~~~~~~~~l~iVaIND~  121 (248)
                      ++||+|.|+ ||+||.+++.+.+.  +.+++|++-|.
T Consensus         5 ~mkV~V~Ga~G~mG~~~~~~~~~~--~~~elva~~d~   39 (273)
T 1dih_A            5 NIRVAIAGAGGRMGRQLIQAALAL--EGVQLGAALER   39 (273)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHS--TTEECCCEECC
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEec
Confidence            489999999 99999999987754  45899887665

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=96.34  E-value=0.008  Score=53.47  Aligned_cols=96  Identities=22%  Similarity=0.310  Sum_probs=63.6

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN  164 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~  164 (248)
                      +++||+|.|+|+||+..++.+...  +.+++++|-|. +.+.+..+.+      +|.  +.+.                 
T Consensus         3 ~~~rvgiiG~G~~g~~~~~~l~~~--~~~~l~av~d~-~~~~~~~~a~------~~g--~~~~-----------------   54 (344)
T 3euw_A            3 LTLRIALFGAGRIGHVHAANIAAN--PDLELVVIADP-FIEGAQRLAE------ANG--AEAV-----------------   54 (344)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHC--TTEEEEEEECS-SHHHHHHHHH------TTT--CEEE-----------------
T ss_pred             CceEEEEECCcHHHHHHHHHHHhC--CCcEEEEEECC-CHHHHHHHHH------HcC--Ccee-----------------
Confidence            358999999999999999987764  46999999887 3333322211      111  1111                 


Q ss_pred             CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                      .|++++ ..+..+|+|+-||--....+-+..-|++| |.|++--|.
T Consensus        55 ~~~~~~-l~~~~~D~V~i~tp~~~h~~~~~~al~~g-k~v~~EKP~   98 (344)
T 3euw_A           55 ASPDEV-FARDDIDGIVIGSPTSTHVDLITRAVERG-IPALCEKPI   98 (344)
T ss_dssp             SSHHHH-TTCSCCCEEEECSCGGGHHHHHHHHHHTT-CCEEECSCS
T ss_pred             CCHHHH-hcCCCCCEEEEeCCchhhHHHHHHHHHcC-CcEEEECCC
Confidence            112221 11236899999998887777777888888 668887773

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=96.27  E-value=0.0011  Score=61.83  Aligned_cols=123  Identities=15%  Similarity=0.144  Sum_probs=81.8

Q ss_pred             ceeeEEEeC-CChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEe
Q 025797           85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS  163 (248)
Q Consensus        85 ~~vkV~ING-FGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~  163 (248)
                      .++||+|-| .|..|+.++|++.++  +.++++.+......-     -+|+++|..|..++.+                .
T Consensus        12 ~~~~V~IvGAtG~vG~ellrlL~~h--P~~el~~l~S~~~aG-----~~~~~~~p~~~~~l~~----------------~   68 (351)
T 1vkn_A           12 HMIRAGIIGATGYTGLELVRLLKNH--PEAKITYLSSRTYAG-----KKLEEIFPSTLENSIL----------------S   68 (351)
T ss_dssp             CCEEEEEESTTSHHHHHHHHHHHHC--TTEEEEEEECSTTTT-----SBHHHHCGGGCCCCBC----------------B
T ss_pred             ceeEEEEECCCCHHHHHHHHHHHcC--CCcEEEEEeCccccc-----CChHHhChhhccCceE----------------E
Confidence            458999996 799999999999887  468999988652221     3456667666511111                1


Q ss_pred             cCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCC---CC-C-----------CCeE---Eeec---
Q 025797          164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAK---GA-D-----------IPTY---VVGV---  222 (248)
Q Consensus       164 ~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk---~~-D-----------~pti---V~GV---  222 (248)
                      +-+++++ |  .++|+|+-|+|--..++-+..+  +|+  +||...+.   ++ |           .|.+   |||+   
T Consensus        69 ~~~~~~~-~--~~~Dvvf~alp~~~s~~~~~~~--~g~--~VIDlSsdfRl~~~~~y~~~y~~~h~~p~~~~~~yglPE~  141 (351)
T 1vkn_A           69 EFDPEKV-S--KNCDVLFTALPAGASYDLVREL--KGV--KIIDLGADFRFDDPGVYREWYGKELSGYENIKRVYGLPEL  141 (351)
T ss_dssp             CCCHHHH-H--HHCSEEEECCSTTHHHHHHTTC--CSC--EEEESSSTTTCSSHHHHHHHHCCCCTTGGGCCEEECCHHH
T ss_pred             eCCHHHh-h--cCCCEEEECCCcHHHHHHHHHh--CCC--EEEECChhhhCCchhhhhhhcCCCCCchhhcCCceECCcc
Confidence            2233332 2  3799999999988877776665  555  46776652   10 1           1334   9998   


Q ss_pred             CCCCCCCCCCeEEeecC
Q 025797          223 NEKDYDHEVANIVRSWM  239 (248)
Q Consensus       223 N~~~y~~~~~~IISnAS  239 (248)
                      |.+.++.  .+||+|..
T Consensus       142 n~e~i~~--a~iIANPg  156 (351)
T 1vkn_A          142 HREEIKN--AQVVGNPG  156 (351)
T ss_dssp             HHHHHTT--CSEEECCC
T ss_pred             CHHHhcc--CCEEeCCC
Confidence            8888875  47999875

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=96.24  E-value=0.0055  Score=54.67  Aligned_cols=99  Identities=20%  Similarity=0.253  Sum_probs=63.5

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN  164 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~  164 (248)
                      |++||+|.|+|+||+..++.+..+ .+.+++++|-|. +.+.+..+-+   .||.   .+.+               +  
T Consensus         1 M~~rigiIG~G~~g~~~~~~l~~~-~~~~~l~av~d~-~~~~~~~~~~---~~g~---~~~~---------------~--   55 (344)
T 3mz0_A            1 MSLRIGVIGTGAIGKEHINRITNK-LSGAEIVAVTDV-NQEAAQKVVE---QYQL---NATV---------------Y--   55 (344)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHT-CSSEEEEEEECS-SHHHHHHHHH---HTTC---CCEE---------------E--
T ss_pred             CeEEEEEECccHHHHHHHHHHHhh-CCCcEEEEEEcC-CHHHHHHHHH---HhCC---CCee---------------e--
Confidence            568999999999999999987632 246999999987 3333322211   0120   0111               1  


Q ss_pred             CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                      .|++++- .+..+|+|+-||--....+-+..-|++| |.|++--|-
T Consensus        56 ~~~~~ll-~~~~~D~V~i~tp~~~h~~~~~~al~~G-k~vl~EKP~   99 (344)
T 3mz0_A           56 PNDDSLL-ADENVDAVLVTSWGPAHESSVLKAIKAQ-KYVFCEKPL   99 (344)
T ss_dssp             SSHHHHH-HCTTCCEEEECSCGGGHHHHHHHHHHTT-CEEEECSCS
T ss_pred             CCHHHHh-cCCCCCEEEECCCchhHHHHHHHHHHCC-CcEEEcCCC
Confidence            1111110 1235899999998887778888888888 678887773

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=96.22  E-value=0.011  Score=54.36  Aligned_cols=36  Identities=25%  Similarity=0.253  Sum_probs=29.5

Q ss_pred             eeeEEEeCCChhhHHHHHHHhhCCC------CCeEEEEEeCC
Q 025797           86 KLKVAINGFGRIGRNFLRCWHGRKD------SPLDVVVVNDS  121 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~~~~~------~~l~iVaIND~  121 (248)
                      ++||+|.|||.||+.+++.+.....      .++++++|-|.
T Consensus         3 ~irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~   44 (332)
T 2ejw_A            3 ALKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVR   44 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECS
T ss_pred             eeEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEEC
Confidence            5899999999999999998765421      15899999886

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=96.18  E-value=0.005  Score=45.10  Aligned_cols=98  Identities=23%  Similarity=0.269  Sum_probs=57.5

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN  164 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~  164 (248)
                      +..+|.|.|.|.||+.+++.+..+.  ..+++++.-.  .+.+..+.++    |   ..+..               ..-
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g--~~~v~~~~r~--~~~~~~~~~~----~---~~~~~---------------~d~   57 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSS--NYSVTVADHD--LAALAVLNRM----G---VATKQ---------------VDA   57 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCS--SEEEEEEESC--HHHHHHHHTT----T---CEEEE---------------CCT
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCC--CceEEEEeCC--HHHHHHHHhC----C---CcEEE---------------ecC
Confidence            4468999999999999999887642  2566665432  2333322211    1   11110               011


Q ss_pred             CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcC
Q 025797          165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA  208 (248)
Q Consensus       165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISA  208 (248)
                      .+++.+.-.-.++|+||+|+|......-+..-++.|.+.+.+|.
T Consensus        58 ~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~  101 (118)
T 3ic5_A           58 KDEAGLAKALGGFDAVISAAPFFLTPIIAKAAKAAGAHYFDLTE  101 (118)
T ss_dssp             TCHHHHHHHTTTCSEEEECSCGGGHHHHHHHHHHTTCEEECCCS
T ss_pred             CCHHHHHHHHcCCCEEEECCCchhhHHHHHHHHHhCCCEEEecC
Confidence            11211111112789999999987666666666678988887764

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=96.02  E-value=0.0068  Score=53.95  Aligned_cols=96  Identities=20%  Similarity=0.178  Sum_probs=61.6

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN  164 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~  164 (248)
                      +++||+|.|+|+||+..++.+...  +.+++++|-|.. .+....+.+.   +|-   . ++                 .
T Consensus         4 ~~~~igiiG~G~~g~~~~~~l~~~--~~~~l~av~d~~-~~~~~~~~~~---~~~---~-~~-----------------~   56 (330)
T 3e9m_A            4 DKIRYGIMSTAQIVPRFVAGLRES--AQAEVRGIASRR-LENAQKMAKE---LAI---P-VA-----------------Y   56 (330)
T ss_dssp             CCEEEEECSCCTTHHHHHHHHHHS--SSEEEEEEBCSS-SHHHHHHHHH---TTC---C-CC-----------------B
T ss_pred             CeEEEEEECchHHHHHHHHHHHhC--CCcEEEEEEeCC-HHHHHHHHHH---cCC---C-ce-----------------e
Confidence            458999999999999999988764  468999998873 2332222111   110   0 00                 0


Q ss_pred             CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCC
Q 025797          165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP  209 (248)
Q Consensus       165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAP  209 (248)
                      .|++++ ..+..+|+|+-||--....+-+..-|++| |.|++--|
T Consensus        57 ~~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~~g-k~vl~EKP   99 (330)
T 3e9m_A           57 GSYEEL-CKDETIDIIYIPTYNQGHYSAAKLALSQG-KPVLLEKP   99 (330)
T ss_dssp             SSHHHH-HHCTTCSEEEECCCGGGHHHHHHHHHHTT-CCEEECSS
T ss_pred             CCHHHH-hcCCCCCEEEEcCCCHHHHHHHHHHHHCC-CeEEEeCC
Confidence            111111 01226899999998887777777778887 56888777

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=95.99  E-value=0.0078  Score=53.97  Aligned_cols=97  Identities=23%  Similarity=0.229  Sum_probs=61.8

Q ss_pred             ceeeEEEeCCChhhH-HHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEe
Q 025797           85 AKLKVAINGFGRIGR-NFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS  163 (248)
Q Consensus        85 ~~vkV~INGFGRIGR-lvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~  163 (248)
                      |++||||.|+|+||+ ..++++..  .+.+++++|-|+...+..+-  +|    |.+.  +.+               + 
T Consensus         1 M~~rvgiiG~G~~g~~~~~~~l~~--~~~~~l~av~d~~~~~~~a~--~~----~~~~--~~~---------------~-   54 (349)
T 3i23_A            1 MTVKMGFIGFGKSANRYHLPYVMI--RETLEVKTIFDLHVNEKAAA--PF----KEKG--VNF---------------T-   54 (349)
T ss_dssp             CCEEEEEECCSHHHHHTTHHHHTT--CTTEEEEEEECTTCCHHHHH--HH----HTTT--CEE---------------E-
T ss_pred             CeeEEEEEccCHHHHHHHHHHHhh--CCCeEEEEEECCCHHHHHHH--hh----CCCC--CeE---------------E-
Confidence            578999999999998 56676543  35799999998742222221  11    1111  111               1 


Q ss_pred             cCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       164 ~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                       .|++++- .+-++|+|+-||--....+-+..-|++| |.|++=-|-
T Consensus        55 -~~~~~ll-~~~~~D~V~i~tp~~~h~~~~~~al~aG-k~Vl~EKP~   98 (349)
T 3i23_A           55 -ADLNELL-TDPEIELITICTPAHTHYDLAKQAILAG-KSVIVEKPF   98 (349)
T ss_dssp             -SCTHHHH-SCTTCCEEEECSCGGGHHHHHHHHHHTT-CEEEECSCS
T ss_pred             -CCHHHHh-cCCCCCEEEEeCCcHHHHHHHHHHHHcC-CEEEEECCC
Confidence             1222221 1236899999998877777777778888 778876663

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=95.99  E-value=0.006  Score=55.24  Aligned_cols=95  Identities=24%  Similarity=0.256  Sum_probs=57.9

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCC--C-hhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEE
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG--G-VKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKV  161 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~--~-~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v  161 (248)
                      +++||+|.|+|.||+.++|.+..+ .+.+++++|-|..  . .+.++-  +|    |   ....                
T Consensus         3 ~~irVaIIG~G~iG~~~~~~l~~~-~~~~elvav~d~~~~~~~~~~a~--~~----g---~~~~----------------   56 (312)
T 1nvm_B            3 QKLKVAIIGSGNIGTDLMIKVLRN-AKYLEMGAMVGIDAASDGLARAQ--RM----G---VTTT----------------   56 (312)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHH-CSSEEEEEEECSCTTCHHHHHHH--HT----T---CCEE----------------
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHhh-CcCeEEEEEEeCChhhhHHHHHH--Hc----C---CCcc----------------
Confidence            358999999999999999988652 2468999998873  1 122221  11    2   1100                


Q ss_pred             EecCCCCCC----CCCCCcccEEecCcccccCchhhhHHHHc--CCCEEEEcCCC
Q 025797          162 VSNRDPLQL----PWAELGIDIVIEGTGVFVDGPGAGKHIQA--GAKKVIITAPA  210 (248)
Q Consensus       162 ~~~~dP~~i----~W~~~GidiVVE~TG~F~~~e~a~~HL~~--GAKKVIISAPs  210 (248)
                        ..+.+++    .|  .++|+|++|||.....+-+..-+++  |. .|+.-.|.
T Consensus        57 --~~~~e~ll~~~~~--~~iDvV~~atp~~~h~~~a~~al~a~~Gk-~Vi~ekp~  106 (312)
T 1nvm_B           57 --YAGVEGLIKLPEF--ADIDFVFDATSASAHVQNEALLRQAKPGI-RLIDLTPA  106 (312)
T ss_dssp             --SSHHHHHHHSGGG--GGEEEEEECSCHHHHHHHHHHHHHHCTTC-EEEECSTT
T ss_pred             --cCCHHHHHhccCC--CCCcEEEECCChHHHHHHHHHHHHhCCCC-EEEEcCcc
Confidence              0111111    12  3799999999976555655565666  53 46655553

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=95.97  E-value=0.012  Score=52.62  Aligned_cols=93  Identities=27%  Similarity=0.383  Sum_probs=61.1

Q ss_pred             ceeeEEEeCCChhhHH-HHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEe
Q 025797           85 AKLKVAINGFGRIGRN-FLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS  163 (248)
Q Consensus        85 ~~vkV~INGFGRIGRl-vlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~  163 (248)
                      +++||||.|+|+||+. .++++...  +.+++++|-|. +.+.+.-         .|.+ +.               ++ 
T Consensus         6 ~~~rvgiiG~G~~g~~~~~~~~~~~--~~~~l~av~d~-~~~~~~~---------~~~~-~~---------------~~-   56 (352)
T 3kux_A            6 DKIKVGLLGYGYASKTFHAPLIMGT--PGLELAGVSSS-DASKVHA---------DWPA-IP---------------VV-   56 (352)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHTS--TTEEEEEEECS-CHHHHHT---------TCSS-CC---------------EE-
T ss_pred             CCceEEEECCCHHHHHHHHHHHhhC--CCcEEEEEECC-CHHHHHh---------hCCC-Cc---------------eE-
Confidence            3689999999999996 67776543  46999999988 4444320         1111 11               11 


Q ss_pred             cCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCC
Q 025797          164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP  209 (248)
Q Consensus       164 ~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAP  209 (248)
                       .|.+++- .+-.+|+|+.||--....+-+..-|++| |.|++=-|
T Consensus        57 -~~~~~ll-~~~~vD~V~i~tp~~~H~~~~~~al~aG-khV~~EKP   99 (352)
T 3kux_A           57 -SDPQMLF-NDPSIDLIVIPTPNDTHFPLAQSALAAG-KHVVVDKP   99 (352)
T ss_dssp             -SCHHHHH-HCSSCCEEEECSCTTTHHHHHHHHHHTT-CEEEECSS
T ss_pred             -CCHHHHh-cCCCCCEEEEeCChHHHHHHHHHHHHCC-CcEEEECC
Confidence             1122221 1236899999998877777777778888 67888777

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=95.92  E-value=0.014  Score=52.03  Aligned_cols=97  Identities=18%  Similarity=0.218  Sum_probs=59.8

Q ss_pred             ceeeEEEeCCChhhHH-HHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEe
Q 025797           85 AKLKVAINGFGRIGRN-FLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS  163 (248)
Q Consensus        85 ~~vkV~INGFGRIGRl-vlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~  163 (248)
                      |++||||.|+|+||+. .++.++.. .+.+++++|-|+. .+.....-+       |.+ +.+               + 
T Consensus         1 m~~rvgiiG~G~~g~~~~~~~~~~~-~~~~~l~av~d~~-~~~~~~~~~-------~~~-~~~---------------~-   54 (345)
T 3f4l_A            1 MVINCAFIGFGKSTTRYHLPYVLNR-KDSWHVAHIFRRH-AKPEEQAPI-------YSH-IHF---------------T-   54 (345)
T ss_dssp             -CEEEEEECCSHHHHHHTHHHHTTC-TTTEEEEEEECSS-CCGGGGSGG-------GTT-CEE---------------E-
T ss_pred             CceEEEEEecCHHHHHHHHHHHHhc-CCCeEEEEEEcCC-HhHHHHHHh-------cCC-Cce---------------E-
Confidence            5689999999999985 66734332 3579999999873 222211111       111 111               1 


Q ss_pred             cCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       164 ~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                       .|++++- .+-.+|+|+-||--....+-+..-|++| |.|++--|-
T Consensus        55 -~~~~~ll-~~~~~D~V~i~tp~~~h~~~~~~al~aG-k~Vl~EKP~   98 (345)
T 3f4l_A           55 -SDLDEVL-NDPDVKLVVVCTHADSHFEYAKRALEAG-KNVLVEKPF   98 (345)
T ss_dssp             -SCTHHHH-TCTTEEEEEECSCGGGHHHHHHHHHHTT-CEEEECSSS
T ss_pred             -CCHHHHh-cCCCCCEEEEcCChHHHHHHHHHHHHcC-CcEEEeCCC
Confidence             1222221 1236899999998877777777778888 677776664

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=95.92  E-value=0.0084  Score=52.82  Aligned_cols=94  Identities=21%  Similarity=0.256  Sum_probs=61.5

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN  164 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~  164 (248)
                      +++||+|.|+|+||+..++.+...  +.+++|+|-|. +.+.+..+.+.                         +.++  
T Consensus         9 ~~~~igiIG~G~~g~~~~~~l~~~--~~~~~v~v~d~-~~~~~~~~~~~-------------------------~~~~--   58 (315)
T 3c1a_A            9 SPVRLALIGAGRWGKNYIRTIAGL--PGAALVRLASS-NPDNLALVPPG-------------------------CVIE--   58 (315)
T ss_dssp             CCEEEEEEECTTTTTTHHHHHHHC--TTEEEEEEEES-CHHHHTTCCTT-------------------------CEEE--
T ss_pred             CcceEEEECCcHHHHHHHHHHHhC--CCcEEEEEEeC-CHHHHHHHHhh-------------------------Cccc--
Confidence            468999999999999999987753  36899999887 33333221110                         1111  


Q ss_pred             CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                      .+++++- .+.++|+|+.||--....+-+..-|++| |.|++--|.
T Consensus        59 ~~~~~~l-~~~~~D~V~i~tp~~~h~~~~~~al~~G-k~v~~eKP~  102 (315)
T 3c1a_A           59 SDWRSVV-SAPEVEAVIIATPPATHAEITLAAIASG-KAVLVEKPL  102 (315)
T ss_dssp             SSTHHHH-TCTTCCEEEEESCGGGHHHHHHHHHHTT-CEEEEESSS
T ss_pred             CCHHHHh-hCCCCCEEEEeCChHHHHHHHHHHHHCC-CcEEEcCCC
Confidence            1222221 1236899999998877667777777877 567776564

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=95.85  E-value=0.017  Score=52.17  Aligned_cols=94  Identities=23%  Similarity=0.231  Sum_probs=62.3

Q ss_pred             eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797           86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR  165 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~  165 (248)
                      ++||+|.|+|+||+..++.+...  +.+++++|-|. +.+.+...-+|    |.     .+.                 .
T Consensus         5 ~~~vgiiG~G~~g~~~~~~l~~~--~~~~l~av~d~-~~~~~~~a~~~----g~-----~~~-----------------~   55 (359)
T 3e18_A            5 KYQLVIVGYGGMGSYHVTLASAA--DNLEVHGVFDI-LAEKREAAAQK----GL-----KIY-----------------E   55 (359)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTS--TTEEEEEEECS-SHHHHHHHHTT----TC-----CBC-----------------S
T ss_pred             cCcEEEECcCHHHHHHHHHHHhC--CCcEEEEEEcC-CHHHHHHHHhc----CC-----cee-----------------C
Confidence            58999999999999988876543  46999999987 33433321122    11     110                 1


Q ss_pred             CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                      |++++ ..+.++|+|+-||--....+-+..-|++| |.|++--|-
T Consensus        56 ~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~aG-khVl~EKP~   98 (359)
T 3e18_A           56 SYEAV-LADEKVDAVLIATPNDSHKELAISALEAG-KHVVCEKPV   98 (359)
T ss_dssp             CHHHH-HHCTTCCEEEECSCGGGHHHHHHHHHHTT-CEEEEESSC
T ss_pred             CHHHH-hcCCCCCEEEEcCCcHHHHHHHHHHHHCC-CCEEeeCCC
Confidence            11111 01236899999999887778788888888 678876663

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=95.81  E-value=0.012  Score=52.94  Aligned_cols=93  Identities=22%  Similarity=0.257  Sum_probs=61.3

Q ss_pred             ceeeEEEeCCChhhHH-HHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEe
Q 025797           85 AKLKVAINGFGRIGRN-FLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS  163 (248)
Q Consensus        85 ~~vkV~INGFGRIGRl-vlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~  163 (248)
                      .++||||.|+|+||+. .++++..  .+.+++++|-|. +.+..+-  +       |.+ +.+               + 
T Consensus         4 ~~~rvgiiG~G~~g~~~~~~~l~~--~~~~~l~av~d~-~~~~~~~--~-------~~~-~~~---------------~-   54 (358)
T 3gdo_A            4 DTIKVGILGYGLSGSVFHGPLLDV--LDEYQISKIMTS-RTEEVKR--D-------FPD-AEV---------------V-   54 (358)
T ss_dssp             TCEEEEEECCSHHHHHTTHHHHTT--CTTEEEEEEECS-CHHHHHH--H-------CTT-SEE---------------E-
T ss_pred             CcceEEEEccCHHHHHHHHHHHhh--CCCeEEEEEEcC-CHHHHHh--h-------CCC-Cce---------------E-
Confidence            3589999999999986 6676543  246999999988 3344321  1       111 111               1 


Q ss_pred             cCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCC
Q 025797          164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP  209 (248)
Q Consensus       164 ~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAP  209 (248)
                       .|++++ ..+-.+|+|+.||.-....+-+..-|++| |.|++=-|
T Consensus        55 -~~~~~l-l~~~~vD~V~i~tp~~~H~~~~~~al~aG-khVl~EKP   97 (358)
T 3gdo_A           55 -HELEEI-TNDPAIELVIVTTPSGLHYEHTMACIQAG-KHVVMEKP   97 (358)
T ss_dssp             -SSTHHH-HTCTTCCEEEECSCTTTHHHHHHHHHHTT-CEEEEESS
T ss_pred             -CCHHHH-hcCCCCCEEEEcCCcHHHHHHHHHHHHcC-CeEEEecC
Confidence             122222 11236899999999887778788888888 67887666

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=95.72  E-value=0.014  Score=52.68  Aligned_cols=98  Identities=29%  Similarity=0.300  Sum_probs=63.3

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhc-cccCcCcccCceEEEecCCcEEECCeEEEEEe
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLL-KYDSLLGTFKADVKIVDNETISVDGKLIKVVS  163 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLL-kYDStHGkf~g~V~v~e~~~L~inGk~I~v~~  163 (248)
                      +++||+|.|+|+||+..++.+..+ .+.+++++|-|+. .+.+..+- +|    |.   .+.+               + 
T Consensus        22 ~~~rvgiIG~G~~g~~~~~~l~~~-~~~~~lvav~d~~-~~~~~~~a~~~----g~---~~~~---------------~-   76 (357)
T 3ec7_A           22 MTLKAGIVGIGMIGSDHLRRLANT-VSGVEVVAVCDIV-AGRAQAALDKY----AI---EAKD---------------Y-   76 (357)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHT-CTTEEEEEEECSS-TTHHHHHHHHH----TC---CCEE---------------E-
T ss_pred             CeeeEEEECCcHHHHHHHHHHHhh-CCCcEEEEEEeCC-HHHHHHHHHHh----CC---CCee---------------e-
Confidence            568999999999999999987632 2469999999873 22222111 11    10   0111               1 


Q ss_pred             cCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       164 ~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                       .|++++ -.+-.+|+|+-||--....+-+..-|++| |.|++=-|-
T Consensus        77 -~~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~aG-k~Vl~EKPl  120 (357)
T 3ec7_A           77 -NDYHDL-INDKDVEVVIITASNEAHADVAVAALNAN-KYVFCEKPL  120 (357)
T ss_dssp             -SSHHHH-HHCTTCCEEEECSCGGGHHHHHHHHHHTT-CEEEEESSS
T ss_pred             -CCHHHH-hcCCCCCEEEEcCCcHHHHHHHHHHHHCC-CCEEeecCc
Confidence             111111 01225899999999888888888888888 678877773

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=95.67  E-value=0.017  Score=52.25  Aligned_cols=94  Identities=18%  Similarity=0.341  Sum_probs=61.1

Q ss_pred             ceeeEEEeCCChhhHH-HHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEe
Q 025797           85 AKLKVAINGFGRIGRN-FLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS  163 (248)
Q Consensus        85 ~~vkV~INGFGRIGRl-vlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~  163 (248)
                      +++||||.|+|+||+. .++++...  +.+++++|-|. +.+.+.-         .|.+ +.+               + 
T Consensus         6 ~~~rvgiiG~G~~g~~~~~~~l~~~--~~~~l~av~d~-~~~~~~~---------~~~~-~~~---------------~-   56 (364)
T 3e82_A            6 NTINIALIGYGFVGKTFHAPLIRSV--PGLNLAFVASR-DEEKVKR---------DLPD-VTV---------------I-   56 (364)
T ss_dssp             -CEEEEEECCSHHHHHTHHHHHHTS--TTEEEEEEECS-CHHHHHH---------HCTT-SEE---------------E-
T ss_pred             CcceEEEECCCHHHHHHHHHHHhhC--CCeEEEEEEcC-CHHHHHh---------hCCC-CcE---------------E-
Confidence            4689999999999996 67766543  46999999988 3344321         1111 111               1 


Q ss_pred             cCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       164 ~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                       .|.+++- .+-.+|+|+-||--....+-+..-|++| |-|++--|-
T Consensus        57 -~~~~~ll-~~~~~D~V~i~tp~~~H~~~~~~al~aG-k~Vl~EKPl  100 (364)
T 3e82_A           57 -ASPEAAV-QHPDVDLVVIASPNATHAPLARLALNAG-KHVVVDKPF  100 (364)
T ss_dssp             -SCHHHHH-TCTTCSEEEECSCGGGHHHHHHHHHHTT-CEEEECSCS
T ss_pred             -CCHHHHh-cCCCCCEEEEeCChHHHHHHHHHHHHCC-CcEEEeCCC
Confidence             1122111 1236899999999887778888888888 668877673

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=95.66  E-value=0.014  Score=52.27  Aligned_cols=96  Identities=16%  Similarity=0.149  Sum_probs=62.4

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN  164 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~  164 (248)
                      +++||+|.|+|+||+..++.+...  +.+++++|-|. +.+.+..+.+.   +|   ...                   .
T Consensus         4 ~~~~vgiiG~G~~g~~~~~~l~~~--~~~~lvav~d~-~~~~~~~~~~~---~g---~~~-------------------~   55 (354)
T 3db2_A            4 NPVGVAAIGLGRWAYVMADAYTKS--EKLKLVTCYSR-TEDKREKFGKR---YN---CAG-------------------D   55 (354)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHTTC--SSEEEEEEECS-SHHHHHHHHHH---HT---CCC-------------------C
T ss_pred             CcceEEEEccCHHHHHHHHHHHhC--CCcEEEEEECC-CHHHHHHHHHH---cC---CCC-------------------c
Confidence            468999999999999999987543  46999999987 33333222110   11   000                   0


Q ss_pred             CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                      .|++++- .+..+|+|+-||--....+-+..-|++| |.|++--|.
T Consensus        56 ~~~~~~l-~~~~~D~V~i~tp~~~h~~~~~~al~~g-k~vl~EKP~   99 (354)
T 3db2_A           56 ATMEALL-AREDVEMVIITVPNDKHAEVIEQCARSG-KHIYVEKPI   99 (354)
T ss_dssp             SSHHHHH-HCSSCCEEEECSCTTSHHHHHHHHHHTT-CEEEEESSS
T ss_pred             CCHHHHh-cCCCCCEEEEeCChHHHHHHHHHHHHcC-CEEEEccCC
Confidence            1111110 1236899999999887777777778887 668887773

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=95.64  E-value=0.012  Score=52.26  Aligned_cols=97  Identities=18%  Similarity=0.174  Sum_probs=60.1

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN  164 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~  164 (248)
                      .++||||.|+|+||+.+++.+...  +.+++++|-|.. .+....+.+   .+|   ..                +++  
T Consensus         4 ~~~rigiiG~G~ig~~~~~~l~~~--~~~~~~av~d~~-~~~~~~~a~---~~~---~~----------------~~~--   56 (329)
T 3evn_A            4 SKVRYGVVSTAKVAPRFIEGVRLA--GNGEVVAVSSRT-LESAQAFAN---KYH---LP----------------KAY--   56 (329)
T ss_dssp             -CEEEEEEBCCTTHHHHHHHHHHH--CSEEEEEEECSC-SSTTCC------CCC---CS----------------CEE--
T ss_pred             CceEEEEEechHHHHHHHHHHHhC--CCcEEEEEEcCC-HHHHHHHHH---HcC---CC----------------ccc--
Confidence            358999999999999998887643  468999998872 222211110   011   00                011  


Q ss_pred             CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                      .|++++- .+..+|+|+-||--....+-+..-|++| |.|++--|-
T Consensus        57 ~~~~~ll-~~~~~D~V~i~tp~~~h~~~~~~al~aG-k~Vl~EKP~  100 (329)
T 3evn_A           57 DKLEDML-ADESIDVIYVATINQDHYKVAKAALLAG-KHVLVEKPF  100 (329)
T ss_dssp             SCHHHHH-TCTTCCEEEECSCGGGHHHHHHHHHHTT-CEEEEESSC
T ss_pred             CCHHHHh-cCCCCCEEEECCCcHHHHHHHHHHHHCC-CeEEEccCC
Confidence            1122221 1236899999998877777777778887 568877773

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=95.56  E-value=0.0094  Score=56.98  Aligned_cols=36  Identities=19%  Similarity=0.320  Sum_probs=29.7

Q ss_pred             eeeEEEeCCChhhHHHHHHHhhC-------CCCCeEEEEEeCC
Q 025797           86 KLKVAINGFGRIGRNFLRCWHGR-------KDSPLDVVVVNDS  121 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~~~-------~~~~l~iVaIND~  121 (248)
                      ++||+|-|+|.||+.+++.+.++       .+.++++++|-|.
T Consensus        10 ~irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~   52 (444)
T 3mtj_A           10 PIHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVR   52 (444)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECS
T ss_pred             cccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEEC
Confidence            58999999999999999876532       1357999999987

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=95.55  E-value=0.014  Score=52.40  Aligned_cols=100  Identities=16%  Similarity=0.183  Sum_probs=59.6

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN  164 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~  164 (248)
                      .++||+|.|+|+||+.+++.+...  +.+++++|-|. +.+....+-+   .+|- ...+.               ++  
T Consensus         5 ~~~~vgiiG~G~ig~~~~~~l~~~--~~~~lv~v~d~-~~~~~~~~a~---~~~~-~~~~~---------------~~--   60 (362)
T 1ydw_A            5 TQIRIGVMGCADIARKVSRAIHLA--PNATISGVASR-SLEKAKAFAT---ANNY-PESTK---------------IH--   60 (362)
T ss_dssp             -CEEEEEESCCTTHHHHHHHHHHC--TTEEEEEEECS-SHHHHHHHHH---HTTC-CTTCE---------------EE--
T ss_pred             CceEEEEECchHHHHHHHHHHhhC--CCcEEEEEEcC-CHHHHHHHHH---HhCC-CCCCe---------------ee--
Confidence            458999999999999999987653  46899999987 3333222111   1110 00011               11  


Q ss_pred             CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                      .|++++ ..+..+|+|+.||--....+-+..-|++| |.|++--|.
T Consensus        61 ~~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~aG-k~V~~EKP~  104 (362)
T 1ydw_A           61 GSYESL-LEDPEIDALYVPLPTSLHVEWAIKAAEKG-KHILLEKPV  104 (362)
T ss_dssp             SSHHHH-HHCTTCCEEEECCCGGGHHHHHHHHHTTT-CEEEECSSC
T ss_pred             CCHHHH-hcCCCCCEEEEcCChHHHHHHHHHHHHCC-CeEEEecCC
Confidence            111111 01125799999998776666666667776 467776663

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=95.20  E-value=0.026  Score=50.84  Aligned_cols=94  Identities=18%  Similarity=0.280  Sum_probs=61.3

Q ss_pred             ceeeEEEeCCChhhHH-HHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEe
Q 025797           85 AKLKVAINGFGRIGRN-FLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS  163 (248)
Q Consensus        85 ~~vkV~INGFGRIGRl-vlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~  163 (248)
                      .++||||.|+|+||+. .++++...  +.+++++|-|.. .+.++         -+|.+ +.               ++ 
T Consensus         4 ~~~rvgiiG~G~~g~~~~~~~l~~~--~~~~l~av~d~~-~~~~~---------~~~~~-~~---------------~~-   54 (362)
T 3fhl_A            4 EIIKTGLAAFGMSGQVFHAPFISTN--PHFELYKIVERS-KELSK---------ERYPQ-AS---------------IV-   54 (362)
T ss_dssp             CCEEEEESCCSHHHHHTTHHHHHHC--TTEEEEEEECSS-CCGGG---------TTCTT-SE---------------EE-
T ss_pred             CceEEEEECCCHHHHHHHHHHHhhC--CCeEEEEEEcCC-HHHHH---------HhCCC-Cc---------------eE-
Confidence            4589999999999996 67766543  469999999873 33322         11211 11               11 


Q ss_pred             cCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       164 ~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                       .|.+++- .+-.+|+|+-||--....+-+..-|++| |.|++=-|-
T Consensus        55 -~~~~~ll-~~~~vD~V~i~tp~~~H~~~~~~al~aG-khVl~EKP~   98 (362)
T 3fhl_A           55 -RSFKELT-EDPEIDLIVVNTPDNTHYEYAGMALEAG-KNVVVEKPF   98 (362)
T ss_dssp             -SCSHHHH-TCTTCCEEEECSCGGGHHHHHHHHHHTT-CEEEEESSC
T ss_pred             -CCHHHHh-cCCCCCEEEEeCChHHHHHHHHHHHHCC-CeEEEecCC
Confidence             1222221 1236899999999887777777778887 678876673

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=95.18  E-value=0.03  Score=52.15  Aligned_cols=101  Identities=17%  Similarity=0.147  Sum_probs=61.7

Q ss_pred             ceeeEEEeCCChhhH-HHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEe
Q 025797           85 AKLKVAINGFGRIGR-NFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS  163 (248)
Q Consensus        85 ~~vkV~INGFGRIGR-lvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~  163 (248)
                      .++||+|.|+|+||+ .+++.+..  .+.+++|+|-|. +.+....+-+   .||.-...+.               +  
T Consensus        82 ~~irigiIG~G~~g~~~~~~~l~~--~~~~~lvav~d~-~~~~~~~~a~---~~g~~~~~~~---------------~--  138 (433)
T 1h6d_A           82 RRFGYAIVGLGKYALNQILPGFAG--CQHSRIEALVSG-NAEKAKIVAA---EYGVDPRKIY---------------D--  138 (433)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHTTT--CSSEEEEEEECS-CHHHHHHHHH---HTTCCGGGEE---------------C--
T ss_pred             CceEEEEECCcHHHHHHHHHHHhh--CCCcEEEEEEcC-CHHHHHHHHH---HhCCCccccc---------------c--
Confidence            468999999999997 78887654  246899999987 3333221111   0111000011               1  


Q ss_pred             cCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       164 ~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                      ..|.+++- .+..+|+|+.||--....+-+..-|++| |.|++--|.
T Consensus       139 ~~~~~~ll-~~~~vD~V~iatp~~~h~~~~~~al~aG-k~Vl~EKPl  183 (433)
T 1h6d_A          139 YSNFDKIA-KDPKIDAVYIILPNSLHAEFAIRAFKAG-KHVMCEKPM  183 (433)
T ss_dssp             SSSGGGGG-GCTTCCEEEECSCGGGHHHHHHHHHHTT-CEEEECSSC
T ss_pred             cCCHHHHh-cCCCCCEEEEcCCchhHHHHHHHHHHCC-CcEEEcCCC
Confidence            12233321 1236899999998877777777777877 468776664

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=95.09  E-value=0.013  Score=53.46  Aligned_cols=99  Identities=20%  Similarity=0.205  Sum_probs=61.7

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCC------CCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeE
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRK------DSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKL  158 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~------~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~  158 (248)
                      .++||||.|+|+||+..++++....      ...+++|+|-|+ +.+.+..+-+      +|... ++..          
T Consensus        25 ~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~-~~~~a~~~a~------~~~~~-~~y~----------   86 (412)
T 4gqa_A           25 ARLNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQ-DQAMAERHAA------KLGAE-KAYG----------   86 (412)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECS-SHHHHHHHHH------HHTCS-EEES----------
T ss_pred             ccceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcC-CHHHHHHHHH------HcCCC-eEEC----------
Confidence            4699999999999998877664311      235799999998 3333322211      11111 1100          


Q ss_pred             EEEEecCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          159 IKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       159 I~v~~~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                             |.+++ ..+-.+|+|+=||--..-.+-+..=|++| |-|++=-|-
T Consensus        87 -------d~~~l-l~~~~vD~V~I~tp~~~H~~~~~~al~aG-khVl~EKP~  129 (412)
T 4gqa_A           87 -------DWREL-VNDPQVDVVDITSPNHLHYTMAMAAIAAG-KHVYCEKPL  129 (412)
T ss_dssp             -------SHHHH-HHCTTCCEEEECSCGGGHHHHHHHHHHTT-CEEEEESCS
T ss_pred             -------CHHHH-hcCCCCCEEEECCCcHHHHHHHHHHHHcC-CCeEeecCC
Confidence                   11111 01235899998998887778888888888 678887774

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=95.07  E-value=0.026  Score=49.67  Aligned_cols=91  Identities=15%  Similarity=0.168  Sum_probs=57.5

Q ss_pred             eeeEEEeCCChhhHH-HHHHHhhCCCCCeEEEEEeCCC--ChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEE
Q 025797           86 KLKVAINGFGRIGRN-FLRCWHGRKDSPLDVVVVNDSG--GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVV  162 (248)
Q Consensus        86 ~vkV~INGFGRIGRl-vlR~~~~~~~~~l~iVaIND~~--~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~  162 (248)
                      ++||+|.|+|+||+. +++.+...  +.+++++|-|..  ..+.++-  +|    |   ..  +                
T Consensus         5 ~~~vgiiG~G~~g~~~~~~~l~~~--~~~~lvav~d~~~~~~~~~~~--~~----g---~~--~----------------   55 (319)
T 1tlt_A            5 KLRIGVVGLGGIAQKAWLPVLAAA--SDWTLQGAWSPTRAKALPICE--SW----R---IP--Y----------------   55 (319)
T ss_dssp             CEEEEEECCSTHHHHTHHHHHHSC--SSEEEEEEECSSCTTHHHHHH--HH----T---CC--B----------------
T ss_pred             cceEEEECCCHHHHHHHHHHHHhC--CCeEEEEEECCCHHHHHHHHH--Hc----C---CC--c----------------
Confidence            589999999999996 88876543  468999898862  2222221  11    1   00  0                


Q ss_pred             ecCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       163 ~~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                       ..+++.+   +.++|+|+.||.-....+-+..-|++| |.|++--|.
T Consensus        56 -~~~~~~l---~~~~D~V~i~tp~~~h~~~~~~al~~G-~~v~~eKP~   98 (319)
T 1tlt_A           56 -ADSLSSL---AASCDAVFVHSSTASHFDVVSTLLNAG-VHVCVDKPL   98 (319)
T ss_dssp             -CSSHHHH---HTTCSEEEECSCTTHHHHHHHHHHHTT-CEEEEESSS
T ss_pred             -cCcHHHh---hcCCCEEEEeCCchhHHHHHHHHHHcC-CeEEEeCCC
Confidence             1122233   236899999998766666666667776 457765563

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=94.96  E-value=0.023  Score=50.74  Aligned_cols=97  Identities=21%  Similarity=0.223  Sum_probs=63.3

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN  164 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~  164 (248)
                      +++||+|.|+|+||+..++.+.... +.+++++|-|. +.+.+..+.+.   +|     +.+.                 
T Consensus        12 ~~~rvgiiG~G~~g~~~~~~l~~~~-~~~~lvav~d~-~~~~~~~~~~~---~~-----~~~~-----------------   64 (354)
T 3q2i_A           12 RKIRFALVGCGRIANNHFGALEKHA-DRAELIDVCDI-DPAALKAAVER---TG-----ARGH-----------------   64 (354)
T ss_dssp             SCEEEEEECCSTTHHHHHHHHHHTT-TTEEEEEEECS-SHHHHHHHHHH---HC-----CEEE-----------------
T ss_pred             CcceEEEEcCcHHHHHHHHHHHhCC-CCeEEEEEEcC-CHHHHHHHHHH---cC-----Ccee-----------------
Confidence            4689999999999999998877541 46999999987 33333222111   11     1111                 


Q ss_pred             CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                      .|++++ ..+.++|+|+-||--....+-+..-|++| |.|++--|-
T Consensus        65 ~~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~~g-k~v~~EKP~  108 (354)
T 3q2i_A           65 ASLTDM-LAQTDADIVILTTPSGLHPTQSIECSEAG-FHVMTEKPM  108 (354)
T ss_dssp             SCHHHH-HHHCCCSEEEECSCGGGHHHHHHHHHHTT-CEEEECSSS
T ss_pred             CCHHHH-hcCCCCCEEEECCCcHHHHHHHHHHHHCC-CCEEEeCCC
Confidence            112221 01236899999998887777777778887 678876673

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=94.89  E-value=0.033  Score=48.74  Aligned_cols=93  Identities=12%  Similarity=0.105  Sum_probs=60.0

Q ss_pred             eeeEEEeCCChhhHH-HHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797           86 KLKVAINGFGRIGRN-FLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN  164 (248)
Q Consensus        86 ~vkV~INGFGRIGRl-vlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~  164 (248)
                      ++||+|.|+|+||+. .++.+...  +.+++++|-|. +.+.+..+-+.   ||   ...                   .
T Consensus         6 ~~~igiIG~G~~g~~~~~~~l~~~--~~~~l~av~d~-~~~~~~~~a~~---~~---~~~-------------------~   57 (308)
T 3uuw_A            6 NIKMGMIGLGSIAQKAYLPILTKS--ERFEFVGAFTP-NKVKREKICSD---YR---IMP-------------------F   57 (308)
T ss_dssp             CCEEEEECCSHHHHHHTHHHHTSC--SSSEEEEEECS-CHHHHHHHHHH---HT---CCB-------------------C
T ss_pred             cCcEEEEecCHHHHHHHHHHHHhC--CCeEEEEEECC-CHHHHHHHHHH---cC---CCC-------------------c
Confidence            589999999999996 78876542  46899999987 33333222111   11   000                   0


Q ss_pred             CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                      .|++++-  + .+|+|+-||--....+-+..-|++| |.|++--|.
T Consensus        58 ~~~~~ll--~-~~D~V~i~tp~~~h~~~~~~al~~g-k~vl~EKP~   99 (308)
T 3uuw_A           58 DSIESLA--K-KCDCIFLHSSTETHYEIIKILLNLG-VHVYVDKPL   99 (308)
T ss_dssp             SCHHHHH--T-TCSEEEECCCGGGHHHHHHHHHHTT-CEEEECSSS
T ss_pred             CCHHHHH--h-cCCEEEEeCCcHhHHHHHHHHHHCC-CcEEEcCCC
Confidence            1122211  1 6899999999887777777778887 458776664

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=94.84  E-value=0.058  Score=47.54  Aligned_cols=95  Identities=19%  Similarity=0.251  Sum_probs=56.7

Q ss_pred             ceeeEEEeCCChhhH-HHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEe
Q 025797           85 AKLKVAINGFGRIGR-NFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS  163 (248)
Q Consensus        85 ~~vkV~INGFGRIGR-lvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~  163 (248)
                      |++||+|.|+|+||+ ..++.+...  +.++++ |-|. +.+.+..+.+.   +|   ...                 ..
T Consensus         1 m~~~igiIG~G~ig~~~~~~~l~~~--~~~~l~-v~d~-~~~~~~~~a~~---~g---~~~-----------------~~   53 (323)
T 1xea_A            1 MSLKIAMIGLGDIAQKAYLPVLAQW--PDIELV-LCTR-NPKVLGTLATR---YR---VSA-----------------TC   53 (323)
T ss_dssp             -CEEEEEECCCHHHHHTHHHHHTTS--TTEEEE-EECS-CHHHHHHHHHH---TT---CCC-----------------CC
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHhC--CCceEE-EEeC-CHHHHHHHHHH---cC---CCc-----------------cc
Confidence            468999999999998 488877543  468988 8887 33333222110   11   000                 00


Q ss_pred             cCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       164 ~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                      ..+.+.+   +..+|+|+.||.-....+-+..-|++| |.|++--|.
T Consensus        54 ~~~~~~l---~~~~D~V~i~tp~~~h~~~~~~al~~G-k~V~~EKP~   96 (323)
T 1xea_A           54 TDYRDVL---QYGVDAVMIHAATDVHSTLAAFFLHLG-IPTFVDKPL   96 (323)
T ss_dssp             SSTTGGG---GGCCSEEEECSCGGGHHHHHHHHHHTT-CCEEEESCS
T ss_pred             cCHHHHh---hcCCCEEEEECCchhHHHHHHHHHHCC-CeEEEeCCC
Confidence            1112222   247899999998776666666667776 347665553

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=94.71  E-value=0.042  Score=51.06  Aligned_cols=103  Identities=19%  Similarity=0.206  Sum_probs=63.3

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhcc-ccCcCcccCceEEEecCCcEEECCeEEEEEe
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLK-YDSLLGTFKADVKIVDNETISVDGKLIKVVS  163 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLk-YDStHGkf~g~V~v~e~~~L~inGk~I~v~~  163 (248)
                      +++||+|.|+|+||+..++.+...  +.+++|+|-|. +.+.+..+.+ +. .||. + .+.               ++.
T Consensus        19 ~~~rvgiIG~G~~g~~h~~~l~~~--~~~~lvav~d~-~~~~~~~~a~~~~-~~g~-~-~~~---------------~~~   77 (444)
T 2ixa_A           19 KKVRIAFIAVGLRGQTHVENMARR--DDVEIVAFADP-DPYMVGRAQEILK-KNGK-K-PAK---------------VFG   77 (444)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHTC--TTEEEEEEECS-CHHHHHHHHHHHH-HTTC-C-CCE---------------EEC
T ss_pred             CCceEEEEecCHHHHHHHHHHHhC--CCcEEEEEEeC-CHHHHHHHHHHHH-hcCC-C-CCc---------------eec
Confidence            468999999999999988877643  46999999998 3333322211 00 0110 0 011               111


Q ss_pred             --cCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          164 --NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       164 --~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                        ..|++++ ..+..+|+|+.||--....+-+..-|++| |-|++--|.
T Consensus        78 ~~~~~~~~l-l~~~~vD~V~i~tp~~~h~~~~~~al~aG-khV~~EKP~  124 (444)
T 2ixa_A           78 NGNDDYKNM-LKDKNIDAVFVSSPWEWHHEHGVAAMKAG-KIVGMEVSG  124 (444)
T ss_dssp             SSTTTHHHH-TTCTTCCEEEECCCGGGHHHHHHHHHHTT-CEEEECCCC
T ss_pred             cCCCCHHHH-hcCCCCCEEEEcCCcHHHHHHHHHHHHCC-CeEEEeCCC
Confidence              1122222 11236899999999887777777778877 467775563

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=94.55  E-value=0.034  Score=49.72  Aligned_cols=98  Identities=19%  Similarity=0.207  Sum_probs=62.8

Q ss_pred             ceeeEEEeCCC-hhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEe
Q 025797           85 AKLKVAINGFG-RIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS  163 (248)
Q Consensus        85 ~~vkV~INGFG-RIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~  163 (248)
                      .++||||.|+| .+|+..++.+... .+.+++|+|-|+ +.+....+-+.   ||   . ..+               + 
T Consensus        17 ~~irvgiIG~G~~~g~~~~~~l~~~-~~~~~lvav~d~-~~~~~~~~a~~---~~---~-~~~---------------~-   71 (340)
T 1zh8_A           17 RKIRLGIVGCGIAARELHLPALKNL-SHLFEITAVTSR-TRSHAEEFAKM---VG---N-PAV---------------F-   71 (340)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHTT-TTTEEEEEEECS-SHHHHHHHHHH---HS---S-CEE---------------E-
T ss_pred             CceeEEEEecCHHHHHHHHHHHHhC-CCceEEEEEEcC-CHHHHHHHHHH---hC---C-Ccc---------------c-
Confidence            56899999999 8999888877542 246999999998 34433222111   11   1 011               1 


Q ss_pred             cCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       164 ~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                       .|.+++ ..+..+|+|+.||--..-.+-+..-|++| |-|++=-|-
T Consensus        72 -~~~~~l-l~~~~vD~V~i~tp~~~H~~~~~~al~aG-khVl~EKPl  115 (340)
T 1zh8_A           72 -DSYEEL-LESGLVDAVDLTLPVELNLPFIEKALRKG-VHVICEKPI  115 (340)
T ss_dssp             -SCHHHH-HHSSCCSEEEECCCGGGHHHHHHHHHHTT-CEEEEESSS
T ss_pred             -CCHHHH-hcCCCCCEEEEeCCchHHHHHHHHHHHCC-CcEEEeCCC
Confidence             011111 01236899999998877777777788888 578887673

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=94.55  E-value=0.034  Score=50.16  Aligned_cols=96  Identities=15%  Similarity=0.239  Sum_probs=60.9

Q ss_pred             eeeEEEeCCChhhHH-HHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797           86 KLKVAINGFGRIGRN-FLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN  164 (248)
Q Consensus        86 ~vkV~INGFGRIGRl-vlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~  164 (248)
                      ++||||.|+|+||+. .++++...  +.+++++|-|+ +.+.+..+-+.      |.+ +.+               +  
T Consensus         5 ~~rigiIG~G~~g~~~~~~~l~~~--~~~~l~av~d~-~~~~~~~~a~~------~~~-~~~---------------~--   57 (359)
T 3m2t_A            5 LIKVGLVGIGAQMQENLLPSLLQM--QDIRIVAACDS-DLERARRVHRF------ISD-IPV---------------L--   57 (359)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTC--TTEEEEEEECS-SHHHHGGGGGT------SCS-CCE---------------E--
T ss_pred             cceEEEECCCHHHHHHHHHHHHhC--CCcEEEEEEcC-CHHHHHHHHHh------cCC-Ccc---------------c--
Confidence            589999999999985 78877543  46999999988 44433322211      111 011               0  


Q ss_pred             CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                      .|++++- .+..+|+|+-||--....+-+..-|++| |.|++--|-
T Consensus        58 ~~~~~ll-~~~~vD~V~i~tp~~~H~~~~~~al~aG-khVl~EKPl  101 (359)
T 3m2t_A           58 DNVPAML-NQVPLDAVVMAGPPQLHFEMGLLAMSKG-VNVFVEKPP  101 (359)
T ss_dssp             SSHHHHH-HHSCCSEEEECSCHHHHHHHHHHHHHTT-CEEEECSCS
T ss_pred             CCHHHHh-cCCCCCEEEEcCCcHHHHHHHHHHHHCC-CeEEEECCC
Confidence            1121110 1236799999998877777777777877 568876674

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=94.53  E-value=0.038  Score=48.48  Aligned_cols=94  Identities=18%  Similarity=0.184  Sum_probs=56.9

Q ss_pred             eeEEEeCCChhhHHH-HHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797           87 LKVAINGFGRIGRNF-LRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR  165 (248)
Q Consensus        87 vkV~INGFGRIGRlv-lR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~  165 (248)
                      +||+|.|+|+||+.. ++.+..   ..+++++|-|. +.+....+-+.   +|.   . .+                 ..
T Consensus         1 ~~vgiiG~G~~g~~~~~~~l~~---~~~~~vav~d~-~~~~~~~~~~~---~g~---~-~~-----------------~~   52 (332)
T 2glx_A            1 NRWGLIGASTIAREWVIGAIRA---TGGEVVSMMST-SAERGAAYATE---NGI---G-KS-----------------VT   52 (332)
T ss_dssp             CEEEEESCCHHHHHTHHHHHHH---TTCEEEEEECS-CHHHHHHHHHH---TTC---S-CC-----------------BS
T ss_pred             CeEEEEcccHHHHHhhhHHhhc---CCCeEEEEECC-CHHHHHHHHHH---cCC---C-cc-----------------cC
Confidence            489999999999987 777665   35899999887 33333222110   111   0 00                 01


Q ss_pred             CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                      |++++ ..+.++|+|+.||.-....+-+..-|++| |.|++--|.
T Consensus        53 ~~~~~-l~~~~~D~V~i~tp~~~h~~~~~~al~~G-k~v~~ekP~   95 (332)
T 2glx_A           53 SVEEL-VGDPDVDAVYVSTTNELHREQTLAAIRAG-KHVLCEKPL   95 (332)
T ss_dssp             CHHHH-HTCTTCCEEEECSCGGGHHHHHHHHHHTT-CEEEECSSS
T ss_pred             CHHHH-hcCCCCCEEEEeCChhHhHHHHHHHHHCC-CeEEEeCCC
Confidence            11111 01125899999998776667677777777 567776564

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=94.29  E-value=0.063  Score=46.25  Aligned_cols=96  Identities=21%  Similarity=0.186  Sum_probs=62.4

Q ss_pred             eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797           86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR  165 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~  165 (248)
                      ..+|+|.|.|++|+.++|.... .. .+++|++-|. +.+..          |+             .++|.+|  ..-.
T Consensus        80 ~~rV~IIGaG~~G~~la~~~~~-~~-g~~iVg~~D~-dp~k~----------g~-------------~i~gv~V--~~~~  131 (211)
T 2dt5_A           80 KWGLCIVGMGRLGSALADYPGF-GE-SFELRGFFDV-DPEKV----------GR-------------PVRGGVI--EHVD  131 (211)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCC-CS-SEEEEEEEES-CTTTT----------TC-------------EETTEEE--EEGG
T ss_pred             CCEEEEECccHHHHHHHHhHhh-cC-CcEEEEEEeC-CHHHH----------hh-------------hhcCCee--ecHH
Confidence            3689999999999999996332 24 7999999876 22221          11             1334333  3333


Q ss_pred             CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCC
Q 025797          166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAK  211 (248)
Q Consensus       166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk  211 (248)
                      +..++ -.+ ++|.|+-|+......+-+..-+++|.+-|+.-+|..
T Consensus       132 dl~el-l~~-~ID~ViIA~Ps~~~~ei~~~l~~aGi~~Ilnf~P~~  175 (211)
T 2dt5_A          132 LLPQR-VPG-RIEIALLTVPREAAQKAADLLVAAGIKGILNFAPVV  175 (211)
T ss_dssp             GHHHH-STT-TCCEEEECSCHHHHHHHHHHHHHHTCCEEEECSSSC
T ss_pred             hHHHH-HHc-CCCEEEEeCCchhHHHHHHHHHHcCCCEEEECCccc
Confidence            33322 135 899999999877655555555667988888878863

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=94.02  E-value=0.043  Score=49.30  Aligned_cols=94  Identities=17%  Similarity=0.231  Sum_probs=60.8

Q ss_pred             eeeEEEeCCChhhH-HHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797           86 KLKVAINGFGRIGR-NFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN  164 (248)
Q Consensus        86 ~vkV~INGFGRIGR-lvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~  164 (248)
                      ++||||.|+|+||+ ..++.+...  +.+++++|-|. +.+....+-+      +|....                 +  
T Consensus        27 ~~rigiIG~G~~g~~~~~~~l~~~--~~~~l~av~d~-~~~~~~~~a~------~~g~~~-----------------~--   78 (350)
T 3rc1_A           27 PIRVGVIGCADIAWRRALPALEAE--PLTEVTAIASR-RWDRAKRFTE------RFGGEP-----------------V--   78 (350)
T ss_dssp             CEEEEEESCCHHHHHTHHHHHHHC--TTEEEEEEEES-SHHHHHHHHH------HHCSEE-----------------E--
T ss_pred             ceEEEEEcCcHHHHHHHHHHHHhC--CCeEEEEEEcC-CHHHHHHHHH------HcCCCC-----------------c--
Confidence            58999999999998 688877653  46999999887 3333322211      111111                 1  


Q ss_pred             CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCC
Q 025797          165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP  209 (248)
Q Consensus       165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAP  209 (248)
                      .+++++- .+..+|+|+-||--....+-+..-|++| |.|++=-|
T Consensus        79 ~~~~~ll-~~~~~D~V~i~tp~~~h~~~~~~al~aG-k~Vl~EKP  121 (350)
T 3rc1_A           79 EGYPALL-ERDDVDAVYVPLPAVLHAEWIDRALRAG-KHVLAEKP  121 (350)
T ss_dssp             ESHHHHH-TCTTCSEEEECCCGGGHHHHHHHHHHTT-CEEEEESS
T ss_pred             CCHHHHh-cCCCCCEEEECCCcHHHHHHHHHHHHCC-CcEEEeCC
Confidence            1222221 1236899999998887777777778887 45877666

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=93.90  E-value=0.061  Score=48.01  Aligned_cols=34  Identities=29%  Similarity=0.443  Sum_probs=29.7

Q ss_pred             eeeEEEeC-CChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797           86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDS  121 (248)
Q Consensus        86 ~vkV~ING-FGRIGRlvlR~~~~~~~~~l~iVaIND~  121 (248)
                      ++||+|.| +||+||.++|++.+.  +++++|++-|.
T Consensus         7 mikV~V~Ga~G~MG~~i~~~l~~~--~~~eLv~~~d~   41 (272)
T 4f3y_A            7 SMKIAIAGASGRMGRMLIEAVLAA--PDATLVGALDR   41 (272)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHHC--TTEEEEEEBCC
T ss_pred             ccEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEEe
Confidence            48999999 999999999998764  57999998775

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=93.77  E-value=0.052  Score=49.38  Aligned_cols=95  Identities=15%  Similarity=0.176  Sum_probs=61.3

Q ss_pred             ceeeEEEeCCC-hhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhc-cccCcCcccCceEEEecCCcEEECCeEEEEE
Q 025797           85 AKLKVAINGFG-RIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLL-KYDSLLGTFKADVKIVDNETISVDGKLIKVV  162 (248)
Q Consensus        85 ~~vkV~INGFG-RIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLL-kYDStHGkf~g~V~v~e~~~L~inGk~I~v~  162 (248)
                      |++||||.|+| ++|+..++.+...  +.+++++|-|+ +.+....+- +|    |   ..+-                 
T Consensus         1 ~~~rigiiG~G~~~~~~~~~~l~~~--~~~~l~av~d~-~~~~~~~~a~~~----g---~~~~-----------------   53 (387)
T 3moi_A            1 MKIRFGICGLGFAGSVLMAPAMRHH--PDAQIVAACDP-NEDVRERFGKEY----G---IPVF-----------------   53 (387)
T ss_dssp             CCEEEEEECCSHHHHTTHHHHHHHC--TTEEEEEEECS-CHHHHHHHHHHH----T---CCEE-----------------
T ss_pred             CceEEEEEeCCHHHHHHHHHHHHhC--CCeEEEEEEeC-CHHHHHHHHHHc----C---CCeE-----------------
Confidence            46899999999 9999888887653  46999999998 333322111 12    1   1110                 


Q ss_pred             ecCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       163 ~~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                        .|.+++- .+-.+|+|+-||--....+-+..-|++| |.|++--|-
T Consensus        54 --~~~~ell-~~~~vD~V~i~tp~~~H~~~~~~al~aG-k~Vl~EKP~   97 (387)
T 3moi_A           54 --ATLAEMM-QHVQMDAVYIASPHQFHCEHVVQASEQG-LHIIVEKPL   97 (387)
T ss_dssp             --SSHHHHH-HHSCCSEEEECSCGGGHHHHHHHHHHTT-CEEEECSCC
T ss_pred             --CCHHHHH-cCCCCCEEEEcCCcHHHHHHHHHHHHCC-CceeeeCCc
Confidence              1111110 1125899999998877777777777887 678876673

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=93.10  E-value=0.091  Score=45.64  Aligned_cols=96  Identities=20%  Similarity=0.227  Sum_probs=61.7

Q ss_pred             eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChh-hhhhhccccCcCcc-cCceEEEecCCcEEECCeEEEEEe
Q 025797           86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVK-NASHLLKYDSLLGT-FKADVKIVDNETISVDGKLIKVVS  163 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e-~~ayLLkYDStHGk-f~g~V~v~e~~~L~inGk~I~v~~  163 (248)
                      ..+|+|+|.|++|+.++|... .....+++|++=|. |++ ..          |+ .             ++|-  +|..
T Consensus        84 ~~~V~IvGaG~lG~aLa~~~~-~~~~g~~iVg~~D~-dp~~ki----------G~~~-------------i~Gv--pV~~  136 (212)
T 3keo_A           84 TTNVMLVGCGNIGRALLHYRF-HDRNKMQISMAFDL-DSNDLV----------GKTT-------------EDGI--PVYG  136 (212)
T ss_dssp             CEEEEEECCSHHHHHHTTCCC-CTTSSEEEEEEEEC-TTSTTT----------TCBC-------------TTCC--BEEE
T ss_pred             CCEEEEECcCHHHHHHHHhhh-cccCCeEEEEEEeC-Cchhcc----------Ccee-------------ECCe--EEeC
Confidence            358999999999999988642 22357999998776 222 21          22 1             1232  2332


Q ss_pred             cCCCCCCCC--CCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCC
Q 025797          164 NRDPLQLPW--AELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAK  211 (248)
Q Consensus       164 ~~dP~~i~W--~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk  211 (248)
                      -   ++++.  .++++|.+|-|+-.-...+-+..-.++|.|-++--||..
T Consensus       137 ~---~dL~~~v~~~~Id~vIIAvPs~~aq~v~d~lv~~GIk~I~nFap~~  183 (212)
T 3keo_A          137 I---STINDHLIDSDIETAILTVPSTEAQEVADILVKAGIKGILSFSPVH  183 (212)
T ss_dssp             G---GGHHHHC-CCSCCEEEECSCGGGHHHHHHHHHHHTCCEEEECSSSC
T ss_pred             H---HHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHcCCCEEEEcCCcc
Confidence            2   22322  456899999998665444555555668999999999963

>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*

Probab=92.85  E-value=0.12  Score=47.62  Aligned_cols=37  Identities=24%  Similarity=0.408  Sum_probs=30.9

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCC-CCCeEEEEEeCC
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRK-DSPLDVVVVNDS  121 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~-~~~l~iVaIND~  121 (248)
                      +++||+|.|||.||+.+++.+.... +.++++++|-|.
T Consensus         3 k~i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~   40 (358)
T 1ebf_A            3 KVVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEA   40 (358)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECS
T ss_pred             ceEEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEEC
Confidence            5689999999999999999887653 235899999885

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=92.57  E-value=0.22  Score=44.01  Aligned_cols=93  Identities=16%  Similarity=0.163  Sum_probs=56.3

Q ss_pred             eeeEEEeCCChhhH-HHHHHHhhCCCCCeEEEEEeCCC--ChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEE
Q 025797           86 KLKVAINGFGRIGR-NFLRCWHGRKDSPLDVVVVNDSG--GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVV  162 (248)
Q Consensus        86 ~vkV~INGFGRIGR-lvlR~~~~~~~~~l~iVaIND~~--~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~  162 (248)
                      ++||||.|+|++|. .+++.+..   ..+++|+|-|..  ..+.++-  +|    |   + +++                
T Consensus         4 ~~rvgiiG~G~~~~~~~~~~l~~---~~~~lvav~d~~~~~~~~~a~--~~----~---~-~~~----------------   54 (336)
T 2p2s_A            4 KIRFAAIGLAHNHIYDMCQQLID---AGAELAGVFESDSDNRAKFTS--LF----P---S-VPF----------------   54 (336)
T ss_dssp             CCEEEEECCSSTHHHHHHHHHHH---TTCEEEEEECSCTTSCHHHHH--HS----T---T-CCB----------------
T ss_pred             ccEEEEECCChHHHHHhhhhhcC---CCcEEEEEeCCCHHHHHHHHH--hc----C---C-Ccc----------------
Confidence            58999999999996 46665532   368999999872  2222221  12    1   0 000                


Q ss_pred             ecCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       163 ~~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                       ..|++++ ..+..+|+|+-||--....+-+..-|++| |-|++=-|.
T Consensus        55 -~~~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~aG-khVl~EKP~   99 (336)
T 2p2s_A           55 -AASAEQL-ITDASIDLIACAVIPCDRAELALRTLDAG-KDFFTAKPP   99 (336)
T ss_dssp             -CSCHHHH-HTCTTCCEEEECSCGGGHHHHHHHHHHTT-CEEEECSSC
T ss_pred             -cCCHHHH-hhCCCCCEEEEeCChhhHHHHHHHHHHCC-CcEEEeCCC
Confidence             0111111 01236899999998777777777777777 457776664

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=92.51  E-value=0.16  Score=44.73  Aligned_cols=37  Identities=16%  Similarity=0.347  Sum_probs=28.5

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhC-----CCCCeEEEEEeCC
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGR-----KDSPLDVVVVNDS  121 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~-----~~~~l~iVaIND~  121 (248)
                      +|+||||.|+|+||+.-++++...     ..+.+++|+|-|+
T Consensus        24 kkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~   65 (393)
T 4fb5_A           24 KPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEA   65 (393)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC
T ss_pred             CCccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECC
Confidence            469999999999999777764321     1246899999997

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=92.40  E-value=0.2  Score=44.30  Aligned_cols=35  Identities=17%  Similarity=0.281  Sum_probs=27.9

Q ss_pred             ceeeEEEeCCChhhHH-HHHHHhhCCCCCeEEEEEeCC
Q 025797           85 AKLKVAINGFGRIGRN-FLRCWHGRKDSPLDVVVVNDS  121 (248)
Q Consensus        85 ~~vkV~INGFGRIGRl-vlR~~~~~~~~~l~iVaIND~  121 (248)
                      .++||||.|+|+||+. +++++..  .+.+++|+|-|+
T Consensus        22 ~mirigiIG~G~ig~~~~~~~~~~--~~~~~lvav~d~   57 (350)
T 4had_A           22 SMLRFGIISTAKIGRDNVVPAIQD--AENCVVTAIASR   57 (350)
T ss_dssp             CCEEEEEESCCHHHHHTHHHHHHH--CSSEEEEEEECS
T ss_pred             CccEEEEEcChHHHHHHHHHHHHh--CCCeEEEEEECC
Confidence            3589999999999985 4566544  246999999998

>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}

Probab=92.21  E-value=0.12  Score=47.18  Aligned_cols=37  Identities=30%  Similarity=0.486  Sum_probs=30.3

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhC----CCCCeEEEEEeCC
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGR----KDSPLDVVVVNDS  121 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~----~~~~l~iVaIND~  121 (248)
                      +++||+|.|+|.||+.++|.+.++    .+.++++++|-|.
T Consensus         3 k~irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~   43 (325)
T 3ing_A            3 KEIRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDS   43 (325)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECS
T ss_pred             ceEEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEec
Confidence            368999999999999999987652    1357999999886

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=92.16  E-value=0.048  Score=48.18  Aligned_cols=98  Identities=16%  Similarity=0.153  Sum_probs=60.3

Q ss_pred             eeeEEEeCCChhhHHHHHHHhhCC-----CCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEE
Q 025797           86 KLKVAINGFGRIGRNFLRCWHGRK-----DSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIK  160 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~~~~-----~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~  160 (248)
                      ++||||.|+|+||+.-++++...+     ....++++|-|+ +.+.+..+-+      +|... ++              
T Consensus         6 klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~-~~~~a~~~a~------~~g~~-~~--------------   63 (390)
T 4h3v_A            6 NLGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGR-DAEAVRAAAG------KLGWS-TT--------------   63 (390)
T ss_dssp             EEEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECS-SHHHHHHHHH------HHTCS-EE--------------
T ss_pred             cCcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcC-CHHHHHHHHH------HcCCC-cc--------------
Confidence            599999999999998777654321     123589999998 4443332211      11111 11              


Q ss_pred             EEecCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          161 VVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       161 v~~~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                       +  .|.+++ ..+-.+|.|+=||=-....+-+..=|++| |-|++=-|-
T Consensus        64 -~--~d~~~l-l~~~~iDaV~I~tP~~~H~~~~~~al~aG-khVl~EKPl  108 (390)
T 4h3v_A           64 -E--TDWRTL-LERDDVQLVDVCTPGDSHAEIAIAALEAG-KHVLCEKPL  108 (390)
T ss_dssp             -E--SCHHHH-TTCTTCSEEEECSCGGGHHHHHHHHHHTT-CEEEEESSS
T ss_pred             -c--CCHHHH-hcCCCCCEEEEeCChHHHHHHHHHHHHcC-CCceeecCc
Confidence             0  111111 11236898988998877777777778887 678876673

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=91.54  E-value=0.22  Score=47.04  Aligned_cols=32  Identities=31%  Similarity=0.484  Sum_probs=28.1

Q ss_pred             eeEEEeCCChhhHHHHHHHhh-CCCCCeEEEEEeCC
Q 025797           87 LKVAINGFGRIGRNFLRCWHG-RKDSPLDVVVVNDS  121 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~-~~~~~l~iVaIND~  121 (248)
                      .+|+|-|||+||+.++|.+.+ .   ..++++++|+
T Consensus       213 ktvgI~G~G~VG~~vA~~l~~~~---G~kVv~~sD~  245 (419)
T 1gtm_A          213 KTIAIQGYGNAGYYLAKIMSEDF---GMKVVAVSDS  245 (419)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT---CCEEEEEECS
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhc---CCEEEEEeCC
Confidence            579999999999999998876 4   4799999987

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=91.46  E-value=0.082  Score=49.19  Aligned_cols=100  Identities=9%  Similarity=0.099  Sum_probs=63.6

Q ss_pred             eeeEEEeCC----ChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEE
Q 025797           86 KLKVAINGF----GRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKV  161 (248)
Q Consensus        86 ~vkV~INGF----GRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v  161 (248)
                      ++||+|.|+    |+||+..++.+... .+.+++|+|-|. +.+....+-+.   ||. . .++               +
T Consensus        20 ~irvgiIG~g~~gG~~g~~~~~~l~~~-~~~~~lvav~d~-~~~~~~~~a~~---~g~-~-~~~---------------~   77 (438)
T 3btv_A           20 PIRVGFVGLNAAKGWAIKTHYPAILQL-SSQFQITALYSP-KIETSIATIQR---LKL-S-NAT---------------A   77 (438)
T ss_dssp             CEEEEEESCCTTSSSTTTTHHHHHHHT-TTTEEEEEEECS-SHHHHHHHHHH---TTC-T-TCE---------------E
T ss_pred             CCEEEEEcccCCCChHHHHHHHHHHhc-CCCeEEEEEEeC-CHHHHHHHHHH---cCC-C-cce---------------e
Confidence            489999999    99999999987653 146999999987 33332221110   121 0 011               1


Q ss_pred             EecCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCC-----CEEEEcCCC
Q 025797          162 VSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA-----KKVIITAPA  210 (248)
Q Consensus       162 ~~~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GA-----KKVIISAPs  210 (248)
                      +  .|.+++- .+..+|+|+.||--....+.+..-|++|.     |.|++--|.
T Consensus        78 ~--~~~~~ll-~~~~vD~V~i~tp~~~H~~~~~~al~aG~~~~~~khVl~EKP~  128 (438)
T 3btv_A           78 F--PTLESFA-SSSTIDMIVIAIQVASHYEVVMPLLEFSKNNPNLKYLFVEWAL  128 (438)
T ss_dssp             E--SSHHHHH-HCSSCSEEEECSCHHHHHHHHHHHHHHGGGCTTCCEEEEESSC
T ss_pred             e--CCHHHHh-cCCCCCEEEEeCCcHHHHHHHHHHHHCCCCcccceeEEecCcc
Confidence            1  1222221 12368999999988777777777788885     778887664

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=91.42  E-value=0.23  Score=45.27  Aligned_cols=36  Identities=31%  Similarity=0.509  Sum_probs=30.1

Q ss_pred             eeeEEEeCCChhhHHHHHHHhhCC------CCCeEEEEEeCC
Q 025797           86 KLKVAINGFGRIGRNFLRCWHGRK------DSPLDVVVVNDS  121 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~~~~------~~~l~iVaIND~  121 (248)
                      ++||+|.|+|.||+.+++.+.+..      +.++++++|-|.
T Consensus         2 mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~   43 (327)
T 3do5_A            2 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADS   43 (327)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECS
T ss_pred             cEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeC
Confidence            379999999999999999887541      157999999986

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=91.32  E-value=0.21  Score=44.61  Aligned_cols=89  Identities=25%  Similarity=0.235  Sum_probs=58.9

Q ss_pred             eeeEEEeCCChhhH-HHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797           86 KLKVAINGFGRIGR-NFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN  164 (248)
Q Consensus        86 ~vkV~INGFGRIGR-lvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~  164 (248)
                      ++||||.|+|+||+ ..++++...  +.+++|+|-|+.. +.             +               |  ++++  
T Consensus        25 ~~rvgiiG~G~ig~~~~~~~l~~~--~~~~lvav~d~~~-~~-------------~---------------g--~~~~--   69 (330)
T 4ew6_A           25 PINLAIVGVGKIVRDQHLPSIAKN--ANFKLVATASRHG-TV-------------E---------------G--VNSY--   69 (330)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHHC--TTEEEEEEECSSC-CC-------------T---------------T--SEEE--
T ss_pred             CceEEEEecCHHHHHHHHHHHHhC--CCeEEEEEEeCCh-hh-------------c---------------C--CCcc--
Confidence            58999999999998 788887654  4699999998731 10             1               1  0111  


Q ss_pred             CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                      .|.+++-=..-.+|+|+-||--..-.+-+..=|++| |-|++--|.
T Consensus        70 ~~~~~ll~~~~~vD~V~i~tp~~~H~~~~~~al~aG-khVl~EKP~  114 (330)
T 4ew6_A           70 TTIEAMLDAEPSIDAVSLCMPPQYRYEAAYKALVAG-KHVFLEKPP  114 (330)
T ss_dssp             SSHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTT-CEEEECSSS
T ss_pred             CCHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHcC-CcEEEeCCC
Confidence            112221000035789999988777777777777887 778877664

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=91.12  E-value=0.33  Score=41.85  Aligned_cols=96  Identities=20%  Similarity=0.250  Sum_probs=57.9

Q ss_pred             eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797           86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR  165 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~  165 (248)
                      ..+|+|.|.|++|+.++|.... ....+++|++-|. +++..          |+             .++|.+|  ....
T Consensus        85 ~~rV~IIGAG~~G~~La~~~~~-~~~g~~iVg~~D~-dp~k~----------g~-------------~i~gv~V--~~~~  137 (215)
T 2vt3_A           85 MTDVILIGVGNLGTAFLHYNFT-KNNNTKISMAFDI-NESKI----------GT-------------EVGGVPV--YNLD  137 (215)
T ss_dssp             --CEEEECCSHHHHHHHHCC-------CCEEEEEES-CTTTT----------TC-------------EETTEEE--EEGG
T ss_pred             CCEEEEEccCHHHHHHHHHHhc-ccCCcEEEEEEeC-CHHHH----------Hh-------------HhcCCee--echh
Confidence            3689999999999999995221 2346899999876 22221          11             1334333  2333


Q ss_pred             CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCC
Q 025797          166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAK  211 (248)
Q Consensus       166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk  211 (248)
                      +..++- .+.  |+|+-|+-.....+-+..-+++|.+-++.-+|..
T Consensus       138 dl~eli-~~~--D~ViIAvPs~~~~ei~~~l~~aGi~~Ilnf~P~~  180 (215)
T 2vt3_A          138 DLEQHV-KDE--SVAILTVPAVAAQSITDRLVALGIKGILNFTPAR  180 (215)
T ss_dssp             GHHHHC-SSC--CEEEECSCHHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             hHHHHH-HhC--CEEEEecCchhHHHHHHHHHHcCCCEEEEcCcee
Confidence            333221 122  8999998766555555566678999999999974

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=91.11  E-value=1.3  Score=37.06  Aligned_cols=33  Identities=12%  Similarity=0.092  Sum_probs=25.8

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND  120 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND  120 (248)
                      |++||.|-|-|.||+.+++.+.++   ..+|+++.-
T Consensus         4 m~~~ilVtGaG~iG~~l~~~L~~~---g~~V~~~~r   36 (286)
T 3ius_A            4 MTGTLLSFGHGYTARVLSRALAPQ---GWRIIGTSR   36 (286)
T ss_dssp             -CCEEEEETCCHHHHHHHHHHGGG---TCEEEEEES
T ss_pred             CcCcEEEECCcHHHHHHHHHHHHC---CCEEEEEEc
Confidence            567999999999999999998865   356666643

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=90.98  E-value=0.3  Score=44.52  Aligned_cols=30  Identities=23%  Similarity=0.326  Sum_probs=24.3

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN  119 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN  119 (248)
                      .+|||.|||+||+.++|.+...   .+++++.+
T Consensus       142 ~tvGIiG~G~IG~~va~~~~~f---g~~v~~~d  171 (334)
T 3kb6_A          142 LTLGVIGTGRIGSRVAMYGLAF---GMKVLCYD  171 (334)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT---TCEEEEEC
T ss_pred             cEEEEECcchHHHHHHHhhccc---CceeeecC
Confidence            5799999999999999987653   46777654

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=90.82  E-value=0.23  Score=38.50  Aligned_cols=33  Identities=18%  Similarity=0.304  Sum_probs=26.1

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND  120 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND  120 (248)
                      ++-+|.|-|+|++|+.+++.+.+.   ..++++|..
T Consensus         6 ~~~~viIiG~G~~G~~la~~L~~~---g~~v~vid~   38 (140)
T 3fwz_A            6 ICNHALLVGYGRVGSLLGEKLLAS---DIPLVVIET   38 (140)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHT---TCCEEEEES
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC---CCCEEEEEC
Confidence            456899999999999999988764   357777743

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=90.80  E-value=0.14  Score=46.50  Aligned_cols=36  Identities=33%  Similarity=0.549  Sum_probs=29.3

Q ss_pred             eeeEEEeCCChhhHHHHHHHhhCC-----CCCeEEEEEeCC
Q 025797           86 KLKVAINGFGRIGRNFLRCWHGRK-----DSPLDVVVVNDS  121 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~~~~-----~~~l~iVaIND~  121 (248)
                      ++||+|.|||.||+.+++.+....     +.++++++|-|.
T Consensus         6 ~irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~   46 (331)
T 3c8m_A            6 TINLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADS   46 (331)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECS
T ss_pred             EEeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEEC
Confidence            589999999999999999876531     125899999886

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=90.72  E-value=0.26  Score=47.21  Aligned_cols=35  Identities=11%  Similarity=0.285  Sum_probs=30.3

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS  121 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~  121 (248)
                      .++||||.|+|+||+.+++.+..  .+.+++++|-|.
T Consensus        22 k~IRVGIIGaG~iG~~~~~~l~~--~~~veLvAV~D~   56 (446)
T 3upl_A           22 KPIRIGLIGAGEMGTDIVTQVAR--MQGIEVGALSAR   56 (446)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHTT--SSSEEEEEEECS
T ss_pred             CceEEEEECChHHHHHHHHHHhh--CCCcEEEEEEeC
Confidence            56999999999999999987654  357999999998

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=90.71  E-value=0.16  Score=48.07  Aligned_cols=101  Identities=10%  Similarity=0.140  Sum_probs=63.5

Q ss_pred             ceeeEEEeCC----ChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEE
Q 025797           85 AKLKVAINGF----GRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIK  160 (248)
Q Consensus        85 ~~vkV~INGF----GRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~  160 (248)
                      .++||||.|+    |.||+..++++... .+.+++|+|-|. +.+.+..+-+   .||- + .++               
T Consensus        38 ~~irvgiIG~g~~GG~~g~~h~~~l~~~-~~~~~lvav~d~-~~~~a~~~a~---~~g~-~-~~~---------------   95 (479)
T 2nvw_A           38 RPIRVGFVGLTSGKSWVAKTHFLAIQQL-SSQFQIVALYNP-TLKSSLQTIE---QLQL-K-HAT---------------   95 (479)
T ss_dssp             CCEEEEEECCCSTTSHHHHTHHHHHHHT-TTTEEEEEEECS-CHHHHHHHHH---HTTC-T-TCE---------------
T ss_pred             CcCEEEEEcccCCCCHHHHHHHHHHHhc-CCCeEEEEEEeC-CHHHHHHHHH---HcCC-C-cce---------------
Confidence            3589999999    99999999987653 146899999997 3333221111   0121 0 001               


Q ss_pred             EEecCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCC-----CEEEEcCCC
Q 025797          161 VVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA-----KKVIITAPA  210 (248)
Q Consensus       161 v~~~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GA-----KKVIISAPs  210 (248)
                      ++  .|++++- .+..+|+|+-||--....+-+..=|++|.     |-|++=-|.
T Consensus        96 ~~--~d~~ell-~~~~vD~V~I~tp~~~H~~~~~~al~aG~~~~~~khVl~EKPl  147 (479)
T 2nvw_A           96 GF--DSLESFA-QYKDIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWAL  147 (479)
T ss_dssp             EE--SCHHHHH-HCTTCSEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSS
T ss_pred             ee--CCHHHHh-cCCCCCEEEEcCCcHHHHHHHHHHHHCCCCcCCceeEEEeCCC
Confidence            11  1121110 11368999999988777777777788884     778887663

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=90.54  E-value=0.26  Score=44.88  Aligned_cols=32  Identities=25%  Similarity=0.356  Sum_probs=26.5

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS  121 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~  121 (248)
                      .+|||.|||+||+.++|.+...   .++|++.+..
T Consensus       138 ktvGIiGlG~IG~~vA~~l~~~---G~~V~~~dr~  169 (324)
T 3evt_A          138 QQLLIYGTGQIGQSLAAKASAL---GMHVIGVNTT  169 (324)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCEEEEEESS
T ss_pred             CeEEEECcCHHHHHHHHHHHhC---CCEEEEECCC
Confidence            5899999999999999988653   4788888753

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=90.52  E-value=0.4  Score=42.52  Aligned_cols=95  Identities=16%  Similarity=0.226  Sum_probs=61.2

Q ss_pred             eeeEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797           86 KLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN  164 (248)
Q Consensus        86 ~vkV~INGF-GRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~  164 (248)
                      ++||||.|+ |+||+..++++...   +.++|+|-|+.. +. +   +.+..+   .+ +.+               +. 
T Consensus         3 mirvgiIG~gG~i~~~h~~~l~~~---~~~lvav~d~~~-~~-~---~~~~~~---~~-~~~---------------~~-   54 (312)
T 3o9z_A            3 MTRFALTGLAGYIAPRHLKAIKEV---GGVLVASLDPAT-NV-G---LVDSFF---PE-AEF---------------FT-   54 (312)
T ss_dssp             CCEEEEECTTSSSHHHHHHHHHHT---TCEEEEEECSSC-CC-G---GGGGTC---TT-CEE---------------ES-
T ss_pred             ceEEEEECCChHHHHHHHHHHHhC---CCEEEEEEcCCH-HH-H---HHHhhC---CC-Cce---------------eC-
Confidence            479999999 79999999987653   479999999732 21 1   111111   11 111               11 


Q ss_pred             CCCCCCC-----C--CCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          165 RDPLQLP-----W--AELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       165 ~dP~~i~-----W--~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                       +.+++.     |  .+-.+|+|+-||--....+-+..=|++| |-|++=-|-
T Consensus        55 -~~~~ll~~~~~l~~~~~~vD~V~I~tP~~~H~~~~~~al~aG-khVl~EKPl  105 (312)
T 3o9z_A           55 -EPEAFEAYLEDLRDRGEGVDYLSIASPNHLHYPQIRMALRLG-ANALSEKPL  105 (312)
T ss_dssp             -CHHHHHHHHHHHHHTTCCCSEEEECSCGGGHHHHHHHHHHTT-CEEEECSSS
T ss_pred             -CHHHHHHHhhhhcccCCCCcEEEECCCchhhHHHHHHHHHCC-CeEEEECCC
Confidence             111110     0  2346899999999888888888888888 668876663

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=89.97  E-value=0.3  Score=44.96  Aligned_cols=94  Identities=19%  Similarity=0.184  Sum_probs=56.8

Q ss_pred             ceeeEEEeCCCh---hhHHHHHHHhhCCCCCeEEEE-EeCCCChhhhhhhc-ccc----CcCcccCceEEEecCCcEEEC
Q 025797           85 AKLKVAINGFGR---IGRNFLRCWHGRKDSPLDVVV-VNDSGGVKNASHLL-KYD----SLLGTFKADVKIVDNETISVD  155 (248)
Q Consensus        85 ~~vkV~INGFGR---IGRlvlR~~~~~~~~~l~iVa-IND~~~~e~~ayLL-kYD----StHGkf~g~V~v~e~~~L~in  155 (248)
                      .++||||.|+|+   ||+..++++...  +.+++|+ |-|. +.+....+- +|.    .++.                 
T Consensus        36 ~~~rvgiiG~G~~~~ig~~h~~~~~~~--~~~~lva~v~d~-~~~~a~~~a~~~g~~~~~~~~-----------------   95 (417)
T 3v5n_A           36 KRIRLGMVGGGSGAFIGAVHRIAARLD--DHYELVAGALSS-TPEKAEASGRELGLDPSRVYS-----------------   95 (417)
T ss_dssp             CCEEEEEESCC--CHHHHHHHHHHHHT--SCEEEEEEECCS-SHHHHHHHHHHHTCCGGGBCS-----------------
T ss_pred             CcceEEEEcCCCchHHHHHHHHHHhhC--CCcEEEEEEeCC-CHHHHHHHHHHcCCCcccccC-----------------
Confidence            368999999999   999888776543  4589997 8887 333322211 121    0111                 


Q ss_pred             CeEEEEEecCCCCCCCCC----CCcccEEecCcccccCchhhhHHHHcCCCEEEEcCC
Q 025797          156 GKLIKVVSNRDPLQLPWA----ELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP  209 (248)
Q Consensus       156 Gk~I~v~~~~dP~~i~W~----~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAP  209 (248)
                                |++++-=.    +-++|+|+-||--....+-+..-|++| |-|++=-|
T Consensus        96 ----------~~~~ll~~~~~~~~~vD~V~I~tp~~~H~~~~~~al~aG-khVl~EKP  142 (417)
T 3v5n_A           96 ----------DFKEMAIREAKLKNGIEAVAIVTPNHVHYAAAKEFLKRG-IHVICDKP  142 (417)
T ss_dssp             ----------CHHHHHHHHHHCTTCCSEEEECSCTTSHHHHHHHHHTTT-CEEEEESS
T ss_pred             ----------CHHHHHhcccccCCCCcEEEECCCcHHHHHHHHHHHhCC-CeEEEECC
Confidence                      11111000    025889999998877777777777777 55777666

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=89.97  E-value=0.095  Score=47.34  Aligned_cols=94  Identities=20%  Similarity=0.181  Sum_probs=51.9

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN  164 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~  164 (248)
                      .++||.|.|.|.+|+.+++.+.+.  .++.++.++    .+.+..+-+       +...+.+|                .
T Consensus        15 ~~mkilvlGaG~vG~~~~~~L~~~--~~v~~~~~~----~~~~~~~~~-------~~~~~~~d----------------~   65 (365)
T 3abi_A           15 RHMKVLILGAGNIGRAIAWDLKDE--FDVYIGDVN----NENLEKVKE-------FATPLKVD----------------A   65 (365)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHTTT--SEEEEEESC----HHHHHHHTT-------TSEEEECC----------------T
T ss_pred             CccEEEEECCCHHHHHHHHHHhcC--CCeEEEEcC----HHHHHHHhc-------cCCcEEEe----------------c
Confidence            457999999999999999987542  334444333    222222211       11122221                1


Q ss_pred             CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEc
Q 025797          165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT  207 (248)
Q Consensus       165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIIS  207 (248)
                      .|++.+.=--.++|+||-|+|-|...+-+..-+++|+.=|=+|
T Consensus        66 ~d~~~l~~~~~~~DvVi~~~p~~~~~~v~~~~~~~g~~yvD~s  108 (365)
T 3abi_A           66 SNFDKLVEVMKEFELVIGALPGFLGFKSIKAAIKSKVDMVDVS  108 (365)
T ss_dssp             TCHHHHHHHHTTCSEEEECCCGGGHHHHHHHHHHHTCEEEECC
T ss_pred             CCHHHHHHHHhCCCEEEEecCCcccchHHHHHHhcCcceEeee
Confidence            2232221111367899999988876666666667776544333

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=89.77  E-value=0.2  Score=44.44  Aligned_cols=97  Identities=12%  Similarity=0.103  Sum_probs=54.9

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCC---ChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEE
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG---GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKV  161 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~---~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v  161 (248)
                      |++||||.|+|.||+..++++    .+.+++++|-|+.   ..+..+-.++.   ||.   ..++.              
T Consensus         1 M~~rvgiiG~G~~~~~~~~~l----~~~~~lvav~d~~~~~~~~~~~~~~~~---~~~---~~~~~--------------   56 (337)
T 3ip3_A            1 MSLKICVIGSSGHFRYALEGL----DEECSITGIAPGVPEEDLSKLEKAISE---MNI---KPKKY--------------   56 (337)
T ss_dssp             -CEEEEEECSSSCHHHHHTTC----CTTEEEEEEECSSTTCCCHHHHHHHHT---TTC---CCEEC--------------
T ss_pred             CceEEEEEccchhHHHHHHhc----CCCcEEEEEecCCchhhHHHHHHHHHH---cCC---CCccc--------------
Confidence            578999999999999777765    3579999999873   23343332210   110   00110              


Q ss_pred             EecCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          162 VSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       162 ~~~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                         .|.+++ ..+-.+|+|+-||--....+-+..=|++| |.|++=-|-
T Consensus        57 ---~~~~~l-l~~~~vD~V~I~tp~~~H~~~~~~al~aG-khVl~EKPl  100 (337)
T 3ip3_A           57 ---NNWWEM-LEKEKPDILVINTVFSLNGKILLEALERK-IHAFVEKPI  100 (337)
T ss_dssp             ---SSHHHH-HHHHCCSEEEECSSHHHHHHHHHHHHHTT-CEEEECSSS
T ss_pred             ---CCHHHH-hcCCCCCEEEEeCCcchHHHHHHHHHHCC-CcEEEeCCC
Confidence               111111 01124677777776665555566666666 456665553

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=89.73  E-value=0.3  Score=44.91  Aligned_cols=32  Identities=31%  Similarity=0.429  Sum_probs=25.8

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS  121 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~  121 (248)
                      .+|||.|||+||+.++|.+...   .++|++.+-.
T Consensus       174 ktvGIIGlG~IG~~vA~~l~~~---G~~V~~~dr~  205 (345)
T 4g2n_A          174 RRLGIFGMGRIGRAIATRARGF---GLAIHYHNRT  205 (345)
T ss_dssp             CEEEEESCSHHHHHHHHHHHTT---TCEEEEECSS
T ss_pred             CEEEEEEeChhHHHHHHHHHHC---CCEEEEECCC
Confidence            5899999999999999987643   4788876643

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=89.31  E-value=0.34  Score=43.83  Aligned_cols=32  Identities=31%  Similarity=0.484  Sum_probs=25.6

Q ss_pred             eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797           86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND  120 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND  120 (248)
                      ..+|+|.|||+||+.++|.+...   .++|++.+-
T Consensus       146 g~~vgIiG~G~IG~~~A~~l~~~---G~~V~~~d~  177 (331)
T 1xdw_A          146 NCTVGVVGLGRIGRVAAQIFHGM---GATVIGEDV  177 (331)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHT---TCEEEEECS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHC---CCEEEEECC
Confidence            35899999999999999987653   468777654

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=89.26  E-value=0.23  Score=44.78  Aligned_cols=94  Identities=14%  Similarity=0.206  Sum_probs=57.8

Q ss_pred             eeeEEEeCCChhhHH-HHHHHhhCCCCCeEEEEEeCCCChhhhhhhc-cccCcCcccCceEEEecCCcEEECCeEEEEEe
Q 025797           86 KLKVAINGFGRIGRN-FLRCWHGRKDSPLDVVVVNDSGGVKNASHLL-KYDSLLGTFKADVKIVDNETISVDGKLIKVVS  163 (248)
Q Consensus        86 ~vkV~INGFGRIGRl-vlR~~~~~~~~~l~iVaIND~~~~e~~ayLL-kYDStHGkf~g~V~v~e~~~L~inGk~I~v~~  163 (248)
                      ++||||.|+|+||.. +++++..   +.+++++|-|+ +.+....+- +|    |   . +.+               + 
T Consensus        26 ~irvgiiG~G~~~~~~~~~~~~~---~~~~lvav~d~-~~~~a~~~a~~~----~---~-~~~---------------~-   77 (361)
T 3u3x_A           26 ELRFAAVGLNHNHIYGQVNCLLR---AGARLAGFHEK-DDALAAEFSAVY----A---D-ARR---------------I-   77 (361)
T ss_dssp             CCEEEEECCCSTTHHHHHHHHHH---TTCEEEEEECS-CHHHHHHHHHHS----S---S-CCE---------------E-
T ss_pred             CcEEEEECcCHHHHHHHHHHhhc---CCcEEEEEEcC-CHHHHHHHHHHc----C---C-Ccc---------------c-
Confidence            589999999999964 4554432   46899999998 333332221 12    1   0 111               0 


Q ss_pred             cCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       164 ~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                       .|.+++ ..+-.+|+|+-||--....+-+..=|++| |-|++=-|-
T Consensus        78 -~~~~~l-l~~~~vD~V~I~tp~~~H~~~~~~al~aG-khVl~EKPl  121 (361)
T 3u3x_A           78 -ATAEEI-LEDENIGLIVSAAVSSERAELAIRAMQHG-KDVLVDKPG  121 (361)
T ss_dssp             -SCHHHH-HTCTTCCEEEECCCHHHHHHHHHHHHHTT-CEEEEESCS
T ss_pred             -CCHHHH-hcCCCCCEEEEeCChHHHHHHHHHHHHCC-CeEEEeCCC
Confidence             111111 01235899999998877777777777777 668776663

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=89.17  E-value=0.36  Score=43.30  Aligned_cols=32  Identities=25%  Similarity=0.236  Sum_probs=25.6

Q ss_pred             eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797           86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND  120 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND  120 (248)
                      ..+|+|.|||+||+.++|.+...   .++|++.+-
T Consensus       124 g~~vgIIG~G~IG~~~A~~l~~~---G~~V~~~dr  155 (303)
T 1qp8_A          124 GEKVAVLGLGEIGTRVGKILAAL---GAQVRGFSR  155 (303)
T ss_dssp             TCEEEEESCSTHHHHHHHHHHHT---TCEEEEECS
T ss_pred             CCEEEEEccCHHHHHHHHHHHHC---CCEEEEECC
Confidence            35899999999999999987653   368777664

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=89.10  E-value=0.36  Score=43.78  Aligned_cols=32  Identities=22%  Similarity=0.421  Sum_probs=25.5

Q ss_pred             eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797           86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND  120 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND  120 (248)
                      ..+|||.|||+||+.++|.+...   .++|++.+-
T Consensus       145 g~~vgIiG~G~IG~~~A~~l~~~---G~~V~~~d~  176 (333)
T 1dxy_A          145 QQTVGVMGTGHIGQVAIKLFKGF---GAKVIAYDP  176 (333)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHT---TCEEEEECS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHC---CCEEEEECC
Confidence            35899999999999999987653   468776654

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=88.73  E-value=0.34  Score=43.85  Aligned_cols=32  Identities=19%  Similarity=0.260  Sum_probs=26.0

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS  121 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~  121 (248)
                      .+|||.|||+||+.++|.+...   .++|++.+..
T Consensus       140 ~tvGIiG~G~IG~~vA~~l~~~---G~~V~~~dr~  171 (315)
T 3pp8_A          140 FSVGIMGAGVLGAKVAESLQAW---GFPLRCWSRS  171 (315)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTT---TCCEEEEESS
T ss_pred             CEEEEEeeCHHHHHHHHHHHHC---CCEEEEEcCC
Confidence            5899999999999999987643   4688877653

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=88.68  E-value=0.4  Score=43.75  Aligned_cols=32  Identities=25%  Similarity=0.265  Sum_probs=26.1

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS  121 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~  121 (248)
                      .+|||.|||+||+.++|.+...   .++|++.+..
T Consensus       141 ~tvGIIGlG~IG~~vA~~l~~~---G~~V~~~dr~  172 (324)
T 3hg7_A          141 RTLLILGTGSIGQHIAHTGKHF---GMKVLGVSRS  172 (324)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCEEEEECSS
T ss_pred             ceEEEEEECHHHHHHHHHHHhC---CCEEEEEcCC
Confidence            5899999999999999988653   4788877643

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=88.64  E-value=0.4  Score=44.14  Aligned_cols=32  Identities=22%  Similarity=0.330  Sum_probs=25.8

Q ss_pred             eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797           86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND  120 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND  120 (248)
                      -.+|||.|||+||+.++|.+...   .++|++.+-
T Consensus       160 g~tvGIIGlG~IG~~vA~~l~~~---G~~V~~~d~  191 (352)
T 3gg9_A          160 GQTLGIFGYGKIGQLVAGYGRAF---GMNVLVWGR  191 (352)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT---TCEEEEECS
T ss_pred             CCEEEEEeECHHHHHHHHHHHhC---CCEEEEECC
Confidence            35899999999999999987653   478887753

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=88.52  E-value=0.41  Score=44.00  Aligned_cols=32  Identities=22%  Similarity=0.376  Sum_probs=26.0

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS  121 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~  121 (248)
                      .+|||.|||+||+.++|.+...   .++|++.+-.
T Consensus       149 ktvgIiGlG~IG~~vA~~l~~~---G~~V~~~d~~  180 (343)
T 2yq5_A          149 LTVGLIGVGHIGSAVAEIFSAM---GAKVIAYDVA  180 (343)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT---TCEEEEECSS
T ss_pred             CeEEEEecCHHHHHHHHHHhhC---CCEEEEECCC
Confidence            5899999999999999987653   4688877643

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=88.51  E-value=0.36  Score=43.89  Aligned_cols=31  Identities=19%  Similarity=0.215  Sum_probs=24.9

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND  120 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND  120 (248)
                      .+|||.|||+||+.++|.+..   -.++|++.+-
T Consensus       146 ~tvGIIG~G~IG~~vA~~l~~---~G~~V~~~d~  176 (330)
T 4e5n_A          146 ATVGFLGMGAIGLAMADRLQG---WGATLQYHEA  176 (330)
T ss_dssp             CEEEEECCSHHHHHHHHHTTT---SCCEEEEECS
T ss_pred             CEEEEEeeCHHHHHHHHHHHH---CCCEEEEECC
Confidence            589999999999999998753   2468777654

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=88.41  E-value=0.43  Score=43.55  Aligned_cols=32  Identities=22%  Similarity=0.329  Sum_probs=25.6

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS  121 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~  121 (248)
                      .+|+|.|||+||+.++|.+...   .++|++.+-.
T Consensus       166 ~tvgIIGlG~IG~~vA~~l~~~---G~~V~~~d~~  197 (335)
T 2g76_A          166 KTLGILGLGRIGREVATRMQSF---GMKTIGYDPI  197 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT---TCEEEEECSS
T ss_pred             CEEEEEeECHHHHHHHHHHHHC---CCEEEEECCC
Confidence            5899999999999999987643   4788777643

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=88.31  E-value=0.45  Score=42.86  Aligned_cols=32  Identities=25%  Similarity=0.480  Sum_probs=26.1

Q ss_pred             eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797           86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND  120 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND  120 (248)
                      ..+|+|.|+|+||+.+++.+...   .++|++.+.
T Consensus       146 g~~vgIIG~G~IG~~~A~~l~~~---G~~V~~~d~  177 (320)
T 1gdh_A          146 NKTLGIYGFGSIGQALAKRAQGF---DMDIDYFDT  177 (320)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTT---TCEEEEECS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHC---CCEEEEECC
Confidence            35899999999999999987643   378887775

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=88.27  E-value=0.48  Score=41.55  Aligned_cols=92  Identities=21%  Similarity=0.217  Sum_probs=58.2

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhC-CCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEe
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGR-KDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS  163 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~-~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~  163 (248)
                      .++||+|.|+|.||+..++.+... ....+++++|-|....   +      ..+                  |  +.  +
T Consensus         6 ~~~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~---a------~~~------------------g--~~--~   54 (294)
T 1lc0_A            6 GKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRREL---G------SLD------------------E--VR--Q   54 (294)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCC---C------EET------------------T--EE--B
T ss_pred             CcceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHH---H------HHc------------------C--CC--C
Confidence            468999999999999888876531 0246899999876210   0      000                  1  11  1


Q ss_pred             cCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       164 ~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                       .|++++- .+-++|+|+.||.-....+-+..-|++| |-|++=-|.
T Consensus        55 -~~~~ell-~~~~vD~V~i~tp~~~H~~~~~~al~aG-khVl~EKPl   98 (294)
T 1lc0_A           55 -ISLEDAL-RSQEIDVAYICSESSSHEDYIRQFLQAG-KHVLVEYPM   98 (294)
T ss_dssp             -CCHHHHH-HCSSEEEEEECSCGGGHHHHHHHHHHTT-CEEEEESCS
T ss_pred             -CCHHHHh-cCCCCCEEEEeCCcHhHHHHHHHHHHCC-CcEEEeCCC
Confidence             1222220 1236899999998877777777777777 457775563

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=88.20  E-value=0.41  Score=44.08  Aligned_cols=31  Identities=19%  Similarity=0.288  Sum_probs=25.0

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND  120 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND  120 (248)
                      .+|||.|||+||+.++|.+...   .++|++.+-
T Consensus       165 ktvGIIG~G~IG~~vA~~l~~~---G~~V~~~dr  195 (351)
T 3jtm_A          165 KTIGTVGAGRIGKLLLQRLKPF---GCNLLYHDR  195 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGG---CCEEEEECS
T ss_pred             CEEeEEEeCHHHHHHHHHHHHC---CCEEEEeCC
Confidence            5899999999999999987643   468776653

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=88.18  E-value=0.45  Score=43.62  Aligned_cols=31  Identities=19%  Similarity=0.310  Sum_probs=25.1

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND  120 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND  120 (248)
                      .+|||.|||+||+.++|.+...   .++|++.+-
T Consensus       169 ~tvGIIG~G~IG~~vA~~l~~~---G~~V~~~d~  199 (347)
T 1mx3_A          169 ETLGIIGLGRVGQAVALRAKAF---GFNVLFYDP  199 (347)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT---TCEEEEECT
T ss_pred             CEEEEEeECHHHHHHHHHHHHC---CCEEEEECC
Confidence            5899999999999999988643   468777653

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=88.17  E-value=0.42  Score=44.38  Aligned_cols=31  Identities=26%  Similarity=0.505  Sum_probs=24.9

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND  120 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND  120 (248)
                      .+|||.|||+||+.++|.+...   .++|++.+-
T Consensus       177 ktvGIIGlG~IG~~vA~~l~~f---G~~V~~~d~  207 (365)
T 4hy3_A          177 SEIGIVGFGDLGKALRRVLSGF---RARIRVFDP  207 (365)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTS---CCEEEEECS
T ss_pred             CEEEEecCCcccHHHHHhhhhC---CCEEEEECC
Confidence            5899999999999999987532   468877653

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=87.80  E-value=0.5  Score=42.45  Aligned_cols=33  Identities=24%  Similarity=0.344  Sum_probs=26.0

Q ss_pred             eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797           86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS  121 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~  121 (248)
                      ..+|+|.|+|+||+.++|.+...   .+++++.+-.
T Consensus       144 g~~vgIIG~G~IG~~~A~~l~~~---G~~V~~~d~~  176 (311)
T 2cuk_A          144 GLTLGLVGMGRIGQAVAKRALAF---GMRVVYHART  176 (311)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT---TCEEEEECSS
T ss_pred             CCEEEEEEECHHHHHHHHHHHHC---CCEEEEECCC
Confidence            35899999999999999988653   3677776643

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=87.79  E-value=0.49  Score=42.80  Aligned_cols=33  Identities=24%  Similarity=0.357  Sum_probs=26.1

Q ss_pred             eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797           86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS  121 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~  121 (248)
                      ..+|+|.|||+||+.++|.+...   .++|++.+-.
T Consensus       146 g~~vgIiG~G~IG~~~A~~l~~~---G~~V~~~d~~  178 (333)
T 1j4a_A          146 DQVVGVVGTGHIGQVFMQIMEGF---GAKVITYDIF  178 (333)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHT---TCEEEEECSS
T ss_pred             CCEEEEEccCHHHHHHHHHHHHC---CCEEEEECCC
Confidence            35899999999999999987653   4687777643

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=87.74  E-value=0.5  Score=43.38  Aligned_cols=31  Identities=23%  Similarity=0.339  Sum_probs=24.8

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND  120 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND  120 (248)
                      .+|||.|||+||+.++|.+...   .++|++.+-
T Consensus       172 ktiGIIGlG~IG~~vA~~l~~~---G~~V~~~dr  202 (340)
T 4dgs_A          172 KRIGVLGLGQIGRALASRAEAF---GMSVRYWNR  202 (340)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT---TCEEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHHC---CCEEEEEcC
Confidence            5899999999999999987643   467776653

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=87.74  E-value=0.23  Score=44.64  Aligned_cols=34  Identities=18%  Similarity=0.162  Sum_probs=26.3

Q ss_pred             cccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          176 GIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       176 GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                      .+|+|+.||.-....+-+..=|++| |-|++=-|-
T Consensus        83 ~iD~V~i~tp~~~h~~~~~~al~~G-k~V~~EKP~  116 (383)
T 3oqb_A           83 NDTMFFDAATTQARPGLLTQAINAG-KHVYCEKPI  116 (383)
T ss_dssp             SCCEEEECSCSSSSHHHHHHHHTTT-CEEEECSCS
T ss_pred             CCCEEEECCCchHHHHHHHHHHHCC-CeEEEcCCC
Confidence            5899999999888878777778887 557765553

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=87.63  E-value=0.52  Score=42.18  Aligned_cols=33  Identities=21%  Similarity=0.416  Sum_probs=26.0

Q ss_pred             eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797           86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS  121 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~  121 (248)
                      ..+|+|.|+|+||+.++|.+...   .++|++.+-.
T Consensus       142 g~~vgIiG~G~IG~~~A~~l~~~---G~~V~~~d~~  174 (307)
T 1wwk_A          142 GKTIGIIGFGRIGYQVAKIANAL---GMNILLYDPY  174 (307)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT---TCEEEEECSS
T ss_pred             CceEEEEccCHHHHHHHHHHHHC---CCEEEEECCC
Confidence            35899999999999999988653   3687776543

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=87.24  E-value=0.44  Score=42.75  Aligned_cols=31  Identities=23%  Similarity=0.352  Sum_probs=25.3

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND  120 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND  120 (248)
                      .+|||.|||+||+.++|.+...   .++|++.+-
T Consensus       123 ~tvGIIGlG~IG~~vA~~l~~~---G~~V~~~dr  153 (290)
T 3gvx_A          123 KALGILGYGGIGRRVAHLAKAF---GMRVIAYTR  153 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH---TCEEEEECS
T ss_pred             chheeeccCchhHHHHHHHHhh---CcEEEEEec
Confidence            5899999999999999987643   468887764

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=86.86  E-value=0.61  Score=42.46  Aligned_cols=31  Identities=19%  Similarity=0.232  Sum_probs=24.8

Q ss_pred             eeEEEeCCChhhHHHHHHHh-hCCCCCeEEEEEeC
Q 025797           87 LKVAINGFGRIGRNFLRCWH-GRKDSPLDVVVVND  120 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~-~~~~~~l~iVaIND  120 (248)
                      .+|+|.|||+||+.+++.+. ..   .++|++.+-
T Consensus       164 ~~vgIIG~G~IG~~vA~~l~~~~---G~~V~~~d~  195 (348)
T 2w2k_A          164 HVLGAVGLGAIQKEIARKAVHGL---GMKLVYYDV  195 (348)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT---CCEEEEECS
T ss_pred             CEEEEEEECHHHHHHHHHHHHhc---CCEEEEECC
Confidence            58999999999999999876 43   367776654

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=86.84  E-value=0.61  Score=41.82  Aligned_cols=33  Identities=24%  Similarity=0.297  Sum_probs=26.0

Q ss_pred             eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797           86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS  121 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~  121 (248)
                      ..+|+|.|+|+||+.+++.+...   .++|++.+-.
T Consensus       142 g~~vgIIG~G~IG~~~A~~l~~~---G~~V~~~d~~  174 (313)
T 2ekl_A          142 GKTIGIVGFGRIGTKVGIIANAM---GMKVLAYDIL  174 (313)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHT---TCEEEEECSS
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHC---CCEEEEECCC
Confidence            35899999999999999987653   3687776543

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=86.80  E-value=0.59  Score=35.65  Aligned_cols=30  Identities=17%  Similarity=0.205  Sum_probs=24.1

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN  119 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN  119 (248)
                      .+|.|-|+|++|+.+++.+.++   ..+++++.
T Consensus         7 ~~v~I~G~G~iG~~la~~L~~~---g~~V~~id   36 (141)
T 3llv_A            7 YEYIVIGSEAAGVGLVRELTAA---GKKVLAVD   36 (141)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHT---TCCEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHC---CCeEEEEE
Confidence            4799999999999999988764   35666664

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=86.55  E-value=1.3  Score=39.21  Aligned_cols=91  Identities=21%  Similarity=0.270  Sum_probs=54.3

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD  166 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~d  166 (248)
                      -+|.|+|.|-||.+.+.++...   ..+++++-..  .+.+..+.++    |.   +.                ++  .+
T Consensus       178 ~~VlV~GaG~vG~~a~qla~~~---Ga~Vi~~~~~--~~~~~~~~~l----Ga---~~----------------v~--~~  227 (348)
T 3two_A          178 TKVGVAGFGGLGSMAVKYAVAM---GAEVSVFARN--EHKKQDALSM----GV---KH----------------FY--TD  227 (348)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHT---TCEEEEECSS--STTHHHHHHT----TC---SE----------------EE--SS
T ss_pred             CEEEEECCcHHHHHHHHHHHHC---CCeEEEEeCC--HHHHHHHHhc----CC---Ce----------------ec--CC
Confidence            3799999999999988887653   2477776322  2333333322    31   10                11  22


Q ss_pred             CCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       167 P~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                      ++.+  .+ |+|+|+||+|.-...+.+-..|+.|-+=|++..+.
T Consensus       228 ~~~~--~~-~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~  268 (348)
T 3two_A          228 PKQC--KE-ELDFIISTIPTHYDLKDYLKLLTYNGDLALVGLPP  268 (348)
T ss_dssp             GGGC--CS-CEEEEEECCCSCCCHHHHHTTEEEEEEEEECCCCC
T ss_pred             HHHH--hc-CCCEEEECCCcHHHHHHHHHHHhcCCEEEEECCCC
Confidence            3322  22 99999999997655666666666665555554443

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=86.54  E-value=0.7  Score=40.47  Aligned_cols=31  Identities=29%  Similarity=0.379  Sum_probs=25.0

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND  120 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND  120 (248)
                      .+|+|.|+|+||+.+++.+...   ..+|++.+-
T Consensus       156 ~~v~IiG~G~iG~~~a~~l~~~---G~~V~~~dr  186 (293)
T 3d4o_A          156 ANVAVLGLGRVGMSVARKFAAL---GAKVKVGAR  186 (293)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCEEEEEES
T ss_pred             CEEEEEeeCHHHHHHHHHHHhC---CCEEEEEEC
Confidence            5899999999999999988754   257777664

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=86.52  E-value=0.61  Score=43.64  Aligned_cols=31  Identities=23%  Similarity=0.232  Sum_probs=25.0

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND  120 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND  120 (248)
                      .+|||.|||+||+.++|.+...   .++|++.+-
T Consensus       146 ktlGiIGlG~IG~~vA~~l~~~---G~~V~~~d~  176 (404)
T 1sc6_A          146 KKLGIIGYGHIGTQLGILAESL---GMYVYFYDI  176 (404)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCEEEEECS
T ss_pred             CEEEEEeECHHHHHHHHHHHHC---CCEEEEEcC
Confidence            5899999999999999987653   468776653

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=86.51  E-value=0.9  Score=33.77  Aligned_cols=30  Identities=23%  Similarity=0.594  Sum_probs=24.0

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN  119 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN  119 (248)
                      ++|.|-|+|++|+.+++.+...   ..+++++.
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~---g~~v~~~d   34 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEK---GHDIVLID   34 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhC---CCeEEEEE
Confidence            5899999999999999988764   35766664

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=86.22  E-value=0.65  Score=43.52  Aligned_cols=30  Identities=13%  Similarity=0.328  Sum_probs=24.5

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN  119 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN  119 (248)
                      .+|||.|||+||+.++|.+...   .++|++.+
T Consensus       120 ktvGIIGlG~IG~~vA~~l~a~---G~~V~~~d  149 (381)
T 3oet_A          120 RTIGIVGVGNVGSRLQTRLEAL---GIRTLLCD  149 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCEEEEEC
T ss_pred             CEEEEEeECHHHHHHHHHHHHC---CCEEEEEC
Confidence            5899999999999999988653   46777664

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=85.85  E-value=0.7  Score=43.16  Aligned_cols=30  Identities=20%  Similarity=0.413  Sum_probs=24.2

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN  119 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN  119 (248)
                      .+|||.|+|+||+.++|.+...   .+++++.+
T Consensus       117 ~tvGIIGlG~IG~~vA~~l~~~---G~~V~~~d  146 (380)
T 2o4c_A          117 RTYGVVGAGQVGGRLVEVLRGL---GWKVLVCD  146 (380)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCEEEEEC
T ss_pred             CEEEEEeCCHHHHHHHHHHHHC---CCEEEEEc
Confidence            5899999999999999987653   46776654

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=85.66  E-value=0.67  Score=43.45  Aligned_cols=31  Identities=23%  Similarity=0.265  Sum_probs=25.1

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND  120 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND  120 (248)
                      .+|+|.|||+||+.++|.+...   .++|++.+-
T Consensus       192 ktvGIIGlG~IG~~vA~~l~a~---G~~V~~~d~  222 (393)
T 2nac_A          192 MHVGTVAAGRIGLAVLRRLAPF---DVHLHYTDR  222 (393)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGG---TCEEEEECS
T ss_pred             CEEEEEeECHHHHHHHHHHHhC---CCEEEEEcC
Confidence            5899999999999999987643   368777654

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=85.36  E-value=0.87  Score=39.93  Aligned_cols=32  Identities=28%  Similarity=0.362  Sum_probs=25.4

Q ss_pred             eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797           86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND  120 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND  120 (248)
                      ..+|+|.|+|+||+.++|.+...   ..+|++.+-
T Consensus       157 g~~v~IiG~G~iG~~~a~~l~~~---G~~V~~~d~  188 (300)
T 2rir_A          157 GSQVAVLGLGRTGMTIARTFAAL---GANVKVGAR  188 (300)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHT---TCEEEEEES
T ss_pred             CCEEEEEcccHHHHHHHHHHHHC---CCEEEEEEC
Confidence            35899999999999999988754   357776653

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=85.08  E-value=0.68  Score=42.12  Aligned_cols=31  Identities=23%  Similarity=0.256  Sum_probs=24.3

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND  120 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND  120 (248)
                      .+|+|.|+|+||+.++|.+...   .++|++.+-
T Consensus       165 ~~vgIIG~G~iG~~vA~~l~~~---G~~V~~~dr  195 (333)
T 3ba1_A          165 KRVGIIGLGRIGLAVAERAEAF---DCPISYFSR  195 (333)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTT---TCCEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHHC---CCEEEEECC
Confidence            5899999999999999987643   357666543

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=85.05  E-value=0.77  Score=41.52  Aligned_cols=33  Identities=24%  Similarity=0.252  Sum_probs=25.5

Q ss_pred             eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797           86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS  121 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~  121 (248)
                      ..+|+|.|+|+||+.+++.+...   .++|++.+-.
T Consensus       146 g~~vgIIG~G~iG~~vA~~l~~~---G~~V~~~d~~  178 (333)
T 2d0i_A          146 GKKVGILGMGAIGKAIARRLIPF---GVKLYYWSRH  178 (333)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGG---TCEEEEECSS
T ss_pred             cCEEEEEccCHHHHHHHHHHHHC---CCEEEEECCC
Confidence            35899999999999999987643   3677766543

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=84.93  E-value=0.74  Score=41.40  Aligned_cols=32  Identities=25%  Similarity=0.358  Sum_probs=25.1

Q ss_pred             eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797           86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND  120 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND  120 (248)
                      ..+|+|.|+|+||+.+++.+...   .++|++.+-
T Consensus       155 g~~vgIIG~G~iG~~iA~~l~~~---G~~V~~~d~  186 (330)
T 2gcg_A          155 QSTVGIIGLGRIGQAIARRLKPF---GVQRFLYTG  186 (330)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGG---TCCEEEEES
T ss_pred             CCEEEEECcCHHHHHHHHHHHHC---CCEEEEECC
Confidence            35899999999999999987643   357776663

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=84.83  E-value=0.87  Score=41.05  Aligned_cols=33  Identities=21%  Similarity=0.410  Sum_probs=25.7

Q ss_pred             eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797           86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS  121 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~  121 (248)
                      ..+|+|.|+|+||+.+++.+...   ..+|++.+-.
T Consensus       150 g~~vgIIG~G~iG~~iA~~l~~~---G~~V~~~d~~  182 (334)
T 2dbq_A          150 GKTIGIIGLGRIGQAIAKRAKGF---NMRILYYSRT  182 (334)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT---TCEEEEECSS
T ss_pred             CCEEEEEccCHHHHHHHHHHHhC---CCEEEEECCC
Confidence            35899999999999999987653   3677766543

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=84.80  E-value=0.52  Score=38.91  Aligned_cols=31  Identities=29%  Similarity=0.340  Sum_probs=24.8

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND  120 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND  120 (248)
                      +||.|-|+|++|+.+++.+.++   ..++++|..
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~---g~~v~vid~   31 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSR---KYGVVIINK   31 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHT---TCCEEEEES
T ss_pred             CEEEEECCCHHHHHHHHHHHhC---CCeEEEEEC
Confidence            4799999999999999988764   356776653

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=84.33  E-value=1.3  Score=34.57  Aligned_cols=31  Identities=29%  Similarity=0.336  Sum_probs=24.7

Q ss_pred             eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797           86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN  119 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN  119 (248)
                      ..+|.|.|+|+||+.+++.+...   ..+++++.
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~~---g~~V~vid   49 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASSS---GHSVVVVD   49 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT---TCEEEEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhC---CCeEEEEE
Confidence            35899999999999999988764   35777664

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=84.07  E-value=0.76  Score=42.25  Aligned_cols=30  Identities=23%  Similarity=0.229  Sum_probs=24.1

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeE-EEEEe
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVN  119 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~-iVaIN  119 (248)
                      .+|+|.|||+||+.++|.+...   .++ |++.+
T Consensus       165 ~tvgIIG~G~IG~~vA~~l~~~---G~~~V~~~d  195 (364)
T 2j6i_A          165 KTIATIGAGRIGYRVLERLVPF---NPKELLYYD  195 (364)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGG---CCSEEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHhC---CCcEEEEEC
Confidence            5899999999999999987643   365 77665

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=83.87  E-value=1  Score=38.53  Aligned_cols=31  Identities=23%  Similarity=0.365  Sum_probs=23.4

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEE
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV  118 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaI  118 (248)
                      |++||+|.|+|.||+.+++.+...   ..+|.++
T Consensus         4 M~m~i~iiG~G~~G~~~a~~l~~~---g~~V~~~   34 (299)
T 1vpd_A            4 MTMKVGFIGLGIMGKPMSKNLLKA---GYSLVVS   34 (299)
T ss_dssp             --CEEEEECCSTTHHHHHHHHHHT---TCEEEEE
T ss_pred             ccceEEEECchHHHHHHHHHHHhC---CCEEEEE
Confidence            567999999999999999987753   3566544

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=83.62  E-value=1  Score=42.73  Aligned_cols=30  Identities=20%  Similarity=0.267  Sum_probs=24.6

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN  119 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN  119 (248)
                      .+|||.|||+||+.++|.+...   .++|++.+
T Consensus       157 ktvGIIGlG~IG~~vA~~l~~~---G~~V~~yd  186 (416)
T 3k5p_A          157 KTLGIVGYGNIGSQVGNLAESL---GMTVRYYD  186 (416)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCEEEEEC
T ss_pred             CEEEEEeeCHHHHHHHHHHHHC---CCEEEEEC
Confidence            5899999999999999987653   46777665

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=83.15  E-value=1.1  Score=34.84  Aligned_cols=30  Identities=17%  Similarity=0.184  Sum_probs=23.7

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN  119 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN  119 (248)
                      .+|.|-|+|++|+.+++.+...   ..++++|-
T Consensus         4 ~~vlI~G~G~vG~~la~~L~~~---g~~V~vid   33 (153)
T 1id1_A            4 DHFIVCGHSILAINTILQLNQR---GQNVTVIS   33 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHT---TCCEEEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHHC---CCCEEEEE
Confidence            4799999999999999988764   35666664

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}

Probab=82.30  E-value=4.1  Score=39.42  Aligned_cols=101  Identities=16%  Similarity=0.138  Sum_probs=62.7

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC---------CChhhhhhhccccCcC-cccCceEEEecCCcEEECC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS---------GGVKNASHLLKYDSLL-GTFKADVKIVDNETISVDG  156 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~---------~~~e~~ayLLkYDStH-Gkf~g~V~v~e~~~L~inG  156 (248)
                      .+|+|-|||-.|..+++.+.+.   .-++|+|-|.         .+.+.+..|+++--.+ |+...-   .+.  + -+.
T Consensus       253 ~~vaVqG~GnVG~~~a~~L~~~---GakvVavsD~~G~i~dp~Gid~edl~~l~~~k~~~~g~v~~~---~~~--~-~~a  323 (470)
T 2bma_A          253 QTAVVSGSGNVALYCVQKLLHL---NVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIKEY---LNH--S-STA  323 (470)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHT---TCEECEEEETTEEEECSSCCCHHHHHHHHHHHTTTTCCGGGG---GGT--C-SSC
T ss_pred             CEEEEECCcHHHHHHHHHHHHC---CCEEEEEEeCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHH---Hhh--c-CCc
Confidence            5899999999999999998864   4688888884         3566666676654332 322110   000  0 011


Q ss_pred             eEEEEEecCCCCCCCCCCCcccEEecCc-ccccCchhhhHHHHcCCCEE
Q 025797          157 KLIKVVSNRDPLQLPWAELGIDIVIEGT-GVFVDGPGAGKHIQAGAKKV  204 (248)
Q Consensus       157 k~I~v~~~~dP~~i~W~~~GidiVVE~T-G~F~~~e~a~~HL~~GAKKV  204 (248)
                      +   .+   ++.++ | +..+|+.+-|. +--.+.+.+...++.+||=|
T Consensus       324 ~---~v---~~~~~-~-~~~~DI~iPcA~~~~I~~~na~~l~~~~ak~V  364 (470)
T 2bma_A          324 K---YF---PNEKP-W-GVPCTLAFPCATQNDVDLDQAKLLQKNGCILV  364 (470)
T ss_dssp             E---EC---SSCCT-T-SSCCSEEEECSSTTCBCSHHHHHHHHTTCCEE
T ss_pred             E---Ee---cCcCe-e-ecCccEEEeccccCcCCHHHHHHHHhcCcEEE
Confidence            1   11   12333 8 57899999875 44556677777666677644

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=82.10  E-value=2.5  Score=34.11  Aligned_cols=30  Identities=23%  Similarity=0.478  Sum_probs=23.2

Q ss_pred             eeEEEeC-CChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797           87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN  119 (248)
Q Consensus        87 vkV~ING-FGRIGRlvlR~~~~~~~~~l~iVaIN  119 (248)
                      |||.|-| -|.||+.+++.+.++   ..+|+++.
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~---g~~V~~~~   31 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTT---DYQIYAGA   31 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTS---SCEEEEEE
T ss_pred             CeEEEECCCCHHHHHHHHHHHHC---CCEEEEEE
Confidence            3788888 899999999998764   35666664

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=81.63  E-value=1.4  Score=37.54  Aligned_cols=30  Identities=17%  Similarity=0.241  Sum_probs=24.3

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN  119 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN  119 (248)
                      +||+|.|+|.||+.+++.+...   ..++++++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~---g~~V~~~~   33 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARA---GHQLHVTT   33 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHT---TCEEEECC
T ss_pred             CEEEEEccCHHHHHHHHHHHhC---CCEEEEEc
Confidence            6899999999999999887653   35776665

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=81.06  E-value=1.1  Score=41.71  Aligned_cols=30  Identities=33%  Similarity=0.560  Sum_probs=24.7

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN  119 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN  119 (248)
                      .+|.|-||||+|+.++|.+...   ..++++|-
T Consensus         5 ~~viIiG~Gr~G~~va~~L~~~---g~~vvvId   34 (413)
T 3l9w_A            5 MRVIIAGFGRFGQITGRLLLSS---GVKMVVLD   34 (413)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHT---TCCEEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHHC---CCCEEEEE
Confidence            4799999999999999998764   46777773

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=80.76  E-value=1.5  Score=36.64  Aligned_cols=33  Identities=21%  Similarity=0.354  Sum_probs=26.1

Q ss_pred             eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797           86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS  121 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~  121 (248)
                      ++||+|.|.|.+|+.+++.+...   ..+++.+.|.
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~---g~~V~~v~~r   55 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAA---QIPAIIANSR   55 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHT---TCCEEEECTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC---CCEEEEEECC
Confidence            46999999999999999988764   3566665665

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=80.57  E-value=1.2  Score=35.55  Aligned_cols=32  Identities=25%  Similarity=0.225  Sum_probs=24.2

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND  120 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND  120 (248)
                      .+|.|.|+|++|+.+++.+....  ..+++++..
T Consensus        40 ~~v~IiG~G~~G~~~a~~L~~~~--g~~V~vid~   71 (183)
T 3c85_A           40 AQVLILGMGRIGTGAYDELRARY--GKISLGIEI   71 (183)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHH--CSCEEEEES
T ss_pred             CcEEEECCCHHHHHHHHHHHhcc--CCeEEEEEC
Confidence            57999999999999999876520  256666643

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=80.14  E-value=1.4  Score=37.17  Aligned_cols=24  Identities=13%  Similarity=0.309  Sum_probs=20.6

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhC
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGR  108 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~  108 (248)
                      |++||+|.|.|.+|+.+++.+...
T Consensus         1 M~~~i~iIG~G~mG~~~a~~l~~~   24 (247)
T 3gt0_A            1 MDKQIGFIGCGNMGMAMIGGMINK   24 (247)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHT
T ss_pred             CCCeEEEECccHHHHHHHHHHHhC
Confidence            346899999999999999988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	248
d1rm4a1	172	c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosp	2e-49
d1hdgo1	169	c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosp	1e-46
d1u8fo1	169	c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosp	3e-43
d1gado1	166	c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosp	8e-43
d1dssg1	169	c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosp	2e-37
d1k3ta1	190	c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosp	3e-35
d2b4ro1	166	c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosp	9e-34
d1obfo1	173	c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosp	1e-33
d3cmco1	171	c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosp	1e-33
d2g82a1	168	c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosp	4e-33
d1cf2o1	171	c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosp	2e-31
d1b7go1	178	c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosp	7e-30
d2czca2	172	c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosp	1e-27
d1lc0a1	172	c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {	0.002

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 172

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score =  158 bits (401), Expect = 2e-49
 Identities = 114/144 (79%), Positives = 128/144 (88%), Gaps = 1/144 (0%)

Query: 87  LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
           LKVAINGFGRIGRNFLRCWHGRKDSPLDVVV+ND+GGVK ASHLLKYDS+LGTF ADVK 
Sbjct: 1   LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKT 60

Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
             +  ISVDGK+IKVVS+R+P+ LPW ++GID+VIEGTGVFVD  GAGKH+QAGAKKV+I
Sbjct: 61  AGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLI 120

Query: 207 TAPAKGADIPTYVVGVNEKDYDHE 230
           TAP KG DIPTYVVGVNE+ Y H 
Sbjct: 121 TAPGKG-DIPTYVVGVNEEGYTHA 143

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]} Length = 169

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

 Score =  151 bits (382), Expect = 1e-46
 Identities = 74/143 (51%), Positives = 92/143 (64%), Gaps = 2/143 (1%)

Query: 88  KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIV 147
           +VAINGFGRIGR   R  + RK+  ++VV +ND    K  +HLLKYDS+   F   V+  
Sbjct: 2   RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVE-Y 60

Query: 148 DNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207
              ++ VDGK IKV +  DP +LPW +LG+D VIE TGVF +   A  H+QAGAKKVIIT
Sbjct: 61  TENSLIVDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIIT 120

Query: 208 APAKGADIPTYVVGVNEKDYDHE 230
           APAKG D  T V+G NE     E
Sbjct: 121 APAKGED-ITVVIGCNEDQLKPE 142

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

 Score =  142 bits (359), Expect = 3e-43
 Identities = 58/151 (38%), Positives = 87/151 (57%), Gaps = 7/151 (4%)

Query: 86  KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND-SGGVKNASHLLKYDSLLGTFKADV 144
           K+KV +NGFGRIGR   R         +D+V +ND    +    ++ +YDS  G F   V
Sbjct: 1   KVKVGVNGFGRIGRLVTRAAFNSGK--VDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTV 58

Query: 145 KIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKV 204
           K  +N  + ++G  I +   RDP ++ W + G + V+E TGVF     AG H+Q GAK+V
Sbjct: 59  K-AENGKLVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRV 117

Query: 205 IITAPAKGADIPTYVVGVNEKDYDHEVANIV 235
           II+AP+  A  P +V+GVN + YD+ +  I+
Sbjct: 118 IISAPSADA--PMFVMGVNHEKYDNSL-KII 145

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]} Length = 166

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

 Score =  141 bits (356), Expect = 8e-43
 Identities = 64/149 (42%), Positives = 89/149 (59%), Gaps = 6/149 (4%)

Query: 87  LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
           +KV INGFGRIGR   R    R D  +++V +ND       +++LKYDS  G F   V+ 
Sbjct: 2   IKVGINGFGRIGRIVFRAAQKRSD--IEIVAINDLLDADYMAYMLKYDSTHGRFDGTVE- 58

Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
           V +  + V+GK I+V + RDP  L W E+G+D+V E TG+F+    A KHI AGAKKV++
Sbjct: 59  VKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 118

Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIV 235
           T P+K    P +V G N   Y  +  +IV
Sbjct: 119 TGPSKDNT-PMFVKGANFDKYAGQ--DIV 144

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]} Length = 169

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

 Score =  127 bits (320), Expect = 2e-37
 Identities = 56/145 (38%), Positives = 80/145 (55%), Gaps = 5/145 (3%)

Query: 88  KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGG-VKNASHLLKYDSLLGTFKADVKI 146
           K+ INGFGRIGR  LR      +    VV VND    ++   ++ KYDS  G FK +VK 
Sbjct: 2   KIGINGFGRIGRLVLRAAL---EMGAQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVK- 57

Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
            ++  + VDGK I V +   P  +PW++ G + ++E TGVF     A  H + GAKKVII
Sbjct: 58  AEDGALVVDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVII 117

Query: 207 TAPAKGADIPTYVVGVNEKDYDHEV 231
           +AP+  A +    V + +   D +V
Sbjct: 118 SAPSADAPMFVCGVNLEKYSKDMKV 142

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]} Length = 190

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

 Score =  122 bits (307), Expect = 3e-35
 Identities = 60/161 (37%), Positives = 90/161 (55%), Gaps = 12/161 (7%)

Query: 86  KLKVAINGFGRIGRNFLR--CWHGRKDSPLDVVVVNDSGG-VKNASHLLKYDSLLGTFKA 142
            +KV INGFGRIGR   +  C  G   + +DVV V D     +  ++ ++YD++ G FK 
Sbjct: 2   PIKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKY 61

Query: 143 DVKIVDNE-------TISVDGKLIKVVS-NRDPLQLPWAELGIDIVIEGTGVFVDGPGAG 194
           +V    +        T+ V+G  I  V   R+P  LPW +LG++ VIE TG+F     A 
Sbjct: 62  EVTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAE 121

Query: 195 KHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIV 235
            H++ GA+KV+I+APA G    T V+GVN  +Y+    ++V
Sbjct: 122 GHLRGGARKVVISAPASGGA-KTLVMGVNHHEYNPSEHHVV 161

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 166

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score =  117 bits (295), Expect = 9e-34
 Identities = 61/149 (40%), Positives = 87/149 (58%), Gaps = 6/149 (4%)

Query: 88  KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGG-VKNASHLLKYDSLLGTFKADVKI 146
           K+ INGFGRIGR   R   GRKD  ++VV +ND    + +  +LLKYDS+ G F      
Sbjct: 2   KLGINGFGRIGRLVFRAAFGRKD--IEVVAINDPFMDLNHLCYLLKYDSVHGQFP-CEVT 58

Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
             +  + +  K + V + +DP Q+PW +  +D+V E TGVF+    A  H++ GAKKVI+
Sbjct: 59  HADGFLLIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIM 118

Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIV 235
           +AP K    P YV+G+N   YD +   IV
Sbjct: 119 SAPPKDDT-PIYVMGINHHQYDTKQ-LIV 145

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]} Length = 173

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

 Score =  117 bits (295), Expect = 1e-33
 Identities = 66/161 (40%), Positives = 91/161 (56%), Gaps = 3/161 (1%)

Query: 87  LKVAINGFGRIGRNFLRCWHGR-KDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
           ++VAING+GRIGRN LR  +   K   +++V +ND G  K  +HL +YD+  G F   V 
Sbjct: 2   IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVS 61

Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
            V+   + V+G  I+V +NR+P QLPW  L +D+V+E TG F     AG HI+ GAKKVI
Sbjct: 62  -VNGSYMVVNGDKIRVDANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVI 120

Query: 206 ITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWMKNWGLSR 246
           I+AP       T V GVN          ++ +    WG S 
Sbjct: 121 ISAPGGADVDATVVYGVNHGTLKSTD-TVISNADNEWGFSN 160

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

 Score =  117 bits (294), Expect = 1e-33
 Identities = 69/148 (46%), Positives = 90/148 (60%), Gaps = 4/148 (2%)

Query: 88  KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIV 147
           KV INGFGRIGRN  R      D  ++VV VND       +HLLKYDS+ G        V
Sbjct: 3   KVGINGFGRIGRNVFRAALKNPD--IEVVAVNDLTDANTLAHLLKYDSVHGRLD-AEVSV 59

Query: 148 DNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207
           +   + V+GK I V + RDP  L W E+G+DIV+E TG F     A KH++AGAKKVII+
Sbjct: 60  NGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIIS 119

Query: 208 APAKGADIPTYVVGVNEKDYDHEVANIV 235
           APAK  +  T V+GVN+  YD +  +++
Sbjct: 120 APAKN-EDITIVMGVNQDKYDPKAHHVI 146

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

 Score =  116 bits (290), Expect = 4e-33
 Identities = 72/149 (48%), Positives = 94/149 (63%), Gaps = 5/149 (3%)

Query: 87  LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
           +KV INGFGRIGR   R  H R    ++V ++ND    K  +HLLKYDS+   F  +V  
Sbjct: 1   MKVGINGFGRIGRQVFRILHSRG---VEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAY 57

Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
            D   + VDGK I+  + +DP ++PWAE G+ +VIE TGVF D   A  H++ GAKKVII
Sbjct: 58  DDQ-YLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVII 116

Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIV 235
           TAPAKG D  T V+GVN + YD    +I+
Sbjct: 117 TAPAKGED-ITIVMGVNHEAYDPSRHHII 144

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

 Score =  111 bits (279), Expect = 2e-31
 Identities = 28/149 (18%), Positives = 49/149 (32%), Gaps = 15/149 (10%)

Query: 88  KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDS-LLGTFKADVKI 146
            VAING+G +G+        + D  + V+ V+ +     A   LK    L       VK+
Sbjct: 3   AVAINGYGTVGKRVADAIAQQDD--MKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKL 60

Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
            +   I V G +                   DIVI+ T   +       + + G K +  
Sbjct: 61  FEKAGIEVAGTV------------DDMLDEADIVIDCTPEGIGAKNLKMYKEKGIKAIFQ 108

Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIV 235
                     ++    N ++   +    V
Sbjct: 109 GGEKHEDIGLSFNSLSNYEESYGKDYTRV 137

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 178

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score =  108 bits (270), Expect = 7e-30
 Identities = 24/144 (16%), Positives = 46/144 (31%), Gaps = 16/144 (11%)

Query: 88  KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIV 147
            VA+NG+G IG+        + D  + +V V  +     A    +    +   +  +K  
Sbjct: 3   NVAVNGYGTIGKRVADAIIKQPD--MKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKF 60

Query: 148 DNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207
           +   I V G +                   DIV++ T   V       ++Q   +  I  
Sbjct: 61  EESGIPVAGTV------------EDLIKTSDIVVDTTPNGVGAQYKPIYLQLQ-RNAIFQ 107

Query: 208 APAKGADI-PTYVVGVNEKDYDHE 230
              K      ++    N  +   +
Sbjct: 108 GGEKAEVADISFSALCNYNEALGK 131

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 172

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score =  101 bits (254), Expect = 1e-27
 Identities = 23/153 (15%), Positives = 51/153 (33%), Gaps = 15/153 (9%)

Query: 86  KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLG-TFKADV 144
           K+KV +NG+G IG+        + D  ++++ +  +     A    +    +    +  +
Sbjct: 2   KVKVGVNGYGTIGKRVAYAVTKQDD--MELIGITKTKPDFEAYRAKELGIPVYAASEEFI 59

Query: 145 KIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKV 204
              + E   V G L                  +DI+++ T   +       + +AG K +
Sbjct: 60  PRFEKEGFEVAGTL------------NDLLEKVDIIVDATPGGIGAKNKPLYEKAGVKAI 107

Query: 205 IITAPAKGADIPTYVVGVNEKDYDHEVANIVRS 237
                       ++V   N +    +    V  
Sbjct: 108 FQGGEKADVAEVSFVAQANYEAALGKNYVRVVV 140

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 172

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.6 bits (81), Expect = 0.002
 Identities = 11/51 (21%), Positives = 19/51 (37%)

Query: 86  KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSL 136
           K  V + G GR G   LR     + +    ++   S     +   ++  SL
Sbjct: 7   KFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSLDEVRQISL 57

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	248
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	97.6
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	97.55
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	96.91
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	96.73
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	96.33
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	95.93
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	95.22
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	94.91
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	94.57
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	94.55
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	94.22
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	94.04
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	93.97
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	93.61
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	93.57
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	93.19
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	92.9
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	92.89
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	92.17
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	92.01
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	91.65
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	91.31
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	90.95
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	90.94
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	90.66
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	90.48
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	90.01
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	89.62
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	89.54
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	88.94
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	88.55
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	88.35
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	88.24
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	87.9
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	87.49
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	87.45
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	85.99
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	85.08
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	84.08
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	83.83
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	82.72
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	81.73
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	81.57
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	81.38
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	80.98
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	80.55
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	80.05

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=100.00  E-value=2.8e-62  Score=415.65  Aligned_cols=154  Identities=75%  Similarity=1.244  Sum_probs=146.8

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD  166 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~d  166 (248)
                      |||||||||||||+++|+++++.+.++++|+|||+.++++++|||||||+||+|+++++.++++.+++||++|+++++++
T Consensus         1 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~ayLlkyDSvhG~~~~~i~~~~~~~~~ing~~I~~~~~~~   80 (172)
T d1rm4a1           1 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDRN   80 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECTTCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECCSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEEcCCCCHHHHHHHHhcCcccccccceeEecCCcceEECCEEEEEecCCC
Confidence            68999999999999999999987778999999999999999999999999999999999866667789999999999999


Q ss_pred             CCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--Ccc
Q 025797          167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--KNW  242 (248)
Q Consensus       167 P~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~~~  242 (248)
                      |+++||.++|+||||||||+|++++++++||++||||||||||+|+ |+|||||||||++|+++ ++||||||  +||
T Consensus        81 p~~i~W~~~gvDiViEcTG~f~~~~~~~~hl~~GakkViiSAP~k~-~~~tiV~GVN~~~~~~~-~~iIS~aSCTtn~  156 (172)
T d1rm4a1          81 PVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGKG-DIPTYVVGVNEEGYTHA-DTIISNASNEWGY  156 (172)
T ss_dssp             GGGSCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSCEEESSCCBS-SCCBCCTTTTGGGCCTT-CSEEECCCTTHHH
T ss_pred             hHHCChhhcCCCEEEecCceEccHHHHHHHHhcCCceEEeeccccc-ceeeEEeecchhhcCCC-CCEEEcccchhcc
Confidence            9999999999999999999999999999999999999999999997 78999999999999987 99999999  565

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=100.00  E-value=1.1e-61  Score=411.97  Aligned_cols=157  Identities=40%  Similarity=0.712  Sum_probs=148.3

Q ss_pred             eeeEEEeCCChhhHHHHHHHhhCC-CCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797           86 KLKVAINGFGRIGRNFLRCWHGRK-DSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN  164 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~~~~-~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~  164 (248)
                      ++||||||||||||+++|+++++. .+.+++|+|||+.++++++|||||||+||+|+++|+. +++.|+|||++|+++++
T Consensus         1 tikigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd~~~~~~~ayLlkyDS~hG~~~~~v~~-~~~~l~i~g~~i~i~~~   79 (173)
T d1obfo1           1 TIRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVSV-NGSYMVVNGDKIRVDAN   79 (173)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEE-ETTEEEETTEEEEEECC
T ss_pred             CeEEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcCCCChHHHHHhhcccccCCCcCceEEe-ccceEEECCEEEEEEec
Confidence            379999999999999999999764 4679999999999999999999999999999999997 57899999999999999


Q ss_pred             CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecCCcccc
Q 025797          165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWMKNWGL  244 (248)
Q Consensus       165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS~~~~~  244 (248)
                      +||+++||.++|+||||||||+|++++++++||++||||||||||+|++.+|||||||||++|+++ ++||||||.++|.
T Consensus        80 ~~p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~GakkViiSAP~~~~~d~tiV~GVN~~~~~~~-~~IISnAs~~fgI  158 (173)
T d1obfo1          80 RNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVIISAPGGADVDATVVYGVNHGTLKST-DTVISNADNEWGF  158 (173)
T ss_dssp             SCGGGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEESSCCCTTSSEECCTTTSGGGCCTT-CCEEECCCTTHHH
T ss_pred             CCHHHCcccccccceEEEecccccCHHHHHHHhccCCcceEEecCCCCCCcceEEEecchhhcCCC-CCEEECCccccCc
Confidence            999999999999999999999999999999999999999999999986456999999999999997 9999999988875

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=5.3e-61  Score=405.51  Aligned_cols=147  Identities=41%  Similarity=0.726  Sum_probs=141.9

Q ss_pred             eEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC-CChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCC
Q 025797           88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD  166 (248)
Q Consensus        88 kV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~-~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~d  166 (248)
                      ||||||||||||+++|+++++  +++++|+|||+ +++++++|||||||+||+|+++|+. +++.|++||++|++++++|
T Consensus         2 kigINGfGRIGR~v~R~~~~~--~~~~iv~INd~~~d~~~~ayLlkyDS~hG~~~~~v~~-~~~~l~i~~~~I~i~~~~~   78 (166)
T d2b4ro1           2 KLGINGFGRIGRLVFRAAFGR--KDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTH-ADGFLLIGEKKVSVFAEKD   78 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTC--SSEEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEE-ETTEEEESSCEEEEECCSS
T ss_pred             eEEEECCCHHHHHHHHHHhhC--CCcEEEEECCCCCChHHhhhhhhcccccccceeeecc-CCceEEecCcEEEEEeCCC
Confidence            899999999999999999986  47999999998 7999999999999999999999998 5789999999999999999


Q ss_pred             CCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC
Q 025797          167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM  239 (248)
Q Consensus       167 P~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS  239 (248)
                      |+++||.++|+||||||||+|++++++++||++||||||||||+|+ ++|||||||||++|+++ ++||||||
T Consensus        79 p~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~gakkViiSAP~kd-~~~tiV~GVN~~~~~~~-~~IIS~AS  149 (166)
T d2b4ro1          79 PSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMSAPPKD-DTPIYVMGINHHQYDTK-QLIVSNAS  149 (166)
T ss_dssp             GGGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCSS-SCCBCCTTTTGGGCCTT-CCEEECCC
T ss_pred             hHHccccccCCCEEEEecccccchhhhhhhhccCCCEEEEeccccc-ccceeeeecchhhcCCC-CCEEEChh
Confidence            9999999999999999999999999999999999999999999997 78999999999999987 99999999

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=3.3e-61  Score=408.63  Aligned_cols=152  Identities=49%  Similarity=0.744  Sum_probs=145.7

Q ss_pred             eEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCCC
Q 025797           88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDP  167 (248)
Q Consensus        88 kV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~dP  167 (248)
                      ||||||||||||+++|+++++.++++++|+|||+.++|+++|||+|||+||+|+++|++ +++.|++||++|+++++++|
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~vvaINd~~~~e~~ayLlkyDS~hG~~~~~v~~-~~~~l~ing~~I~~~~~~~p   80 (169)
T d1hdgo1           2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEY-TENSLIVDGKEIKVFAEPDP   80 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEE-CSSEEEETTEEEEEECCSSG
T ss_pred             EEEEECCChHHHHHHHHHHhccCCCEEEEEeccCccHHHHHHHHhccccccccCceEEE-ECCEEEECCEEEEEEeCCCh
Confidence            89999999999999999998766789999999999999999999999999999999998 57899999999999999999


Q ss_pred             CCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--Ccc
Q 025797          168 LQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--KNW  242 (248)
Q Consensus       168 ~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~~~  242 (248)
                      +++||.++|+|+||||||+|++++++++||++||||||||||+|+ +++||||||||++|+++ ++|||+||  +||
T Consensus        81 ~~i~W~~~gvD~ViEcTG~f~t~~~~~~hl~~GakkViiSAP~kd-~~~tiV~GvN~~~~~~~-~~iiS~aScttn~  155 (169)
T d1hdgo1          81 SKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIITAPAKG-EDITVVIGCNEDQLKPE-HTIISCASNEYGY  155 (169)
T ss_dssp             GGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBS-CSEECCTTTTGGGCCTT-CCEEECCCTTHHH
T ss_pred             hhCCccccCCCEEEEecceeccccchhhhccCCCceEEEecccCC-CcceeEEecchhhcCCc-CcEEEchhHhhhH
Confidence            999999999999999999999999999999999999999999997 67999999999999998 99999999  565

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.1e-61  Score=406.78  Aligned_cols=151  Identities=42%  Similarity=0.725  Sum_probs=143.9

Q ss_pred             eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797           86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR  165 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~  165 (248)
                      ++||||||||||||+++|+++++  +++++|+|||+.++++++|||||||+||+|+++|++ +++.|++||++|++++++
T Consensus         1 tikigINGFGRIGR~v~R~~~~~--~~i~ivaINd~~~~~~~ayLl~yDSvhG~~~~~v~~-~~~~l~ing~~I~i~~~~   77 (166)
T d1gado1           1 TIKVGINGFGRIGRIVFRAAQKR--SDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEV-KDGHLIVNGKKIRVTAER   77 (166)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTC--SSEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEE-ETTEEEETTEEEEEECCS
T ss_pred             CeEEEEECCcHHHHHHHHHHhhC--CCeEEEEEeCCCCHHHHhhhheecCCCCCcCCeEEE-eCCEEEECCEEEEEEeCC
Confidence            37999999999999999999976  479999999999999999999999999999999998 578999999999999999


Q ss_pred             CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--Ccc
Q 025797          166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--KNW  242 (248)
Q Consensus       166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~~~  242 (248)
                      +|+++||+++|+||||||||+|++++++++||++||||||||||+|+ ++|||||||||++|++  ++||||||  +||
T Consensus        78 ~p~~i~W~~~gvDiViEcTG~f~t~~~~~~hl~~gakkViiSaP~~d-~~~~iV~GvN~~~~~~--~~iiS~aSCTTnc  153 (166)
T d1gado1          78 DPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKD-NTPMFVKGANFDKYAG--QDIVSNASNETGY  153 (166)
T ss_dssp             SGGGGCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCSS-SCCBCCTTTTGGGCCS--CSEEECCCTTHHH
T ss_pred             ChHHCCccccCCCEEEEccccccCHHHHHHHhcCCCceEEeeccccc-cCCEEEeCccccccCC--CCEEEeccHHHhH
Confidence            99999999999999999999999999999999999999999999996 6899999999999985  47999999  887

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=100.00  E-value=4.4e-60  Score=400.30  Aligned_cols=148  Identities=48%  Similarity=0.796  Sum_probs=141.9

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD  166 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~d  166 (248)
                      |||||||||||||+++|+++++   .+++|+|||+.++++++|||+|||+||+|++++++ +++.|.+||++|++++++|
T Consensus         1 ikigINGfGRIGR~~~R~l~~~---~i~iv~INd~~~~~~~ayLl~yDS~hG~~~~~v~~-~~~~l~i~g~~I~~~~~~~   76 (168)
T d2g82a1           1 MKVGINGFGRIGRQVFRILHSR---GVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAY-DDQYLYVDGKAIRATAVKD   76 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH---TCCEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEE-CSSEEEETTEEEEEECCSS
T ss_pred             CEEEEECCcHHHHHHHHHHhcC---CCEEEEECCCcchhhhhheeecccccCcccccccc-ccceeEecceeEEEEecCC
Confidence            5899999999999999998874   59999999999999999999999999999999998 5789999999999999999


Q ss_pred             CCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC
Q 025797          167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM  239 (248)
Q Consensus       167 P~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS  239 (248)
                      |+++||.++|+||||||||+|++++++++||++||||||||||+|+ ++|||||||||++|++++|+||||||
T Consensus        77 p~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~gakkViiSAP~kd-~~~~iV~GvN~~~y~~~~~~IIS~AS  148 (168)
T d2g82a1          77 PKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKG-EDITIVMGVNHEAYDPSRHHIISNAS  148 (168)
T ss_dssp             GGGCCTGGGTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBS-CSEECCTTTTGGGCCTTTCCEEECCC
T ss_pred             hHHCcccccCCceeEeccccccchHHhhhhhccccceeeecccccc-ccceeEeeccHHHccCCCCcEEEecc
Confidence            9999999999999999999999999999999999999999999997 67899999999999986589999999

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=100.00  E-value=5.3e-60  Score=401.69  Aligned_cols=152  Identities=45%  Similarity=0.757  Sum_probs=145.2

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD  166 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~d  166 (248)
                      +||||||||||||+++|+++++  +++++|+|||+.++++++|||+|||+||+|+.+|++ +++.|.+||++|++++++|
T Consensus         2 ikIgINGfGRIGR~v~R~~l~~--~~~~ivaINd~~d~~~~ayll~yDS~hG~~~~~v~~-~~~~l~i~g~~i~i~~~~~   78 (171)
T d3cmco1           2 VKVGINGFGRIGRNVFRAALKN--PDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSV-NGNNLVVNGKEIIVKAERD   78 (171)
T ss_dssp             EEEEEESCSHHHHHHHHHHTTC--TTEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEE-ETTEEEETTEEEEEECCSS
T ss_pred             eEEEEECCCHHHHHHHHHHhhC--CCcEEEEEcCCCCHHHHhhhhcccccCCcccccccc-cCCCEEeCCcceeeEecCC
Confidence            7999999999999999999975  579999999999999999999999999999999998 5789999999999999999


Q ss_pred             CCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--Ccc
Q 025797          167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--KNW  242 (248)
Q Consensus       167 P~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~~~  242 (248)
                      |+++||.++|+||||||||+|++++++++||++||||||||||+|+ +++||||||||++|++++|+||||||  +||
T Consensus        79 p~~i~W~~~~vDiViEcTG~f~t~~~~~~hl~~gakkViiSap~~d-~~~t~V~GvN~~~~~~~~~~iIS~aSCTtn~  155 (171)
T d3cmco1          79 PENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKN-EDITIVMGVNQDKYDPKAHHVISNASNETGY  155 (171)
T ss_dssp             GGGCCTGGGTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBS-CSEECCTTTSGGGCCTTTCCEEECCCTTHHH
T ss_pred             HHHccccccCCcEEEEecCccCCHHHHHHHHhCCCceEEEeccccc-ccceeeeccchheecCCCCeEEEehhHHHhH
Confidence            9999999999999999999999999999999999999999999997 56899999999999976689999999  887

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=100.00  E-value=1.5e-59  Score=398.28  Aligned_cols=151  Identities=38%  Similarity=0.707  Sum_probs=144.1

Q ss_pred             eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC-CChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797           86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN  164 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~-~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~  164 (248)
                      ++||||||||||||+++|+++++  +++++|+|||+ .++++++|||||||+||+|+++|++ +++.|.+||++|+++++
T Consensus         1 kikIgINGFGRIGR~v~R~~~~~--~~~~ivaINd~~~~~~~~ayLlkyDS~hG~~~~~v~~-~~~~l~i~~~~I~~~~~   77 (169)
T d1u8fo1           1 KVKVGVNGFGRIGRLVTRAAFNS--GKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKA-ENGKLVINGNPITIFQE   77 (169)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH--CSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEE-ETTEEEETTEEEEEECC
T ss_pred             CcEEEEECCcHHHHHHHHHHHHC--CCcEEEEecCCCccHHHHHHHHhhccccCCcCCeEEE-ECCEEEECCEEEEEEEC
Confidence            47999999999999999999986  46999999997 7999999999999999999999998 57899999999999999


Q ss_pred             CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--Ccc
Q 025797          165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--KNW  242 (248)
Q Consensus       165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~~~  242 (248)
                      ++|+++||.++|+||||||||+|++++.++.||++||||||||||++  |+|||||||||++|+++ ++||||||  +||
T Consensus        78 ~~p~~i~W~~~~vDiViEcTG~f~~~~~~~~hl~~gakkViiSaP~~--d~~tiV~GvN~~~~~~~-~~iIS~aSCTtn~  154 (169)
T d1u8fo1          78 RDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSA--DAPMFVMGVNHEKYDNS-LKIISNASNEFGY  154 (169)
T ss_dssp             SSGGGCCTTTTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEESSCCS--SSCBCCTTTTGGGCCTT-CSEEECCCTTHHH
T ss_pred             CChhhCCccccCCCEEEEecceeccHHHHHHHHhcCCceEeeccccc--ccceEEeecCHHHcCCC-CCEEECccHHHHH
Confidence            99999999999999999999999999999999999999999999997  46899999999999987 99999999  888

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=2.1e-59  Score=403.17  Aligned_cols=157  Identities=37%  Similarity=0.658  Sum_probs=144.6

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCC--CCCeEEEEEeCC-CChhhhhhhccccCcCcccCceEEEec-------CCcEEE
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRK--DSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVD-------NETISV  154 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~--~~~l~iVaIND~-~~~e~~ayLLkYDStHGkf~g~V~v~e-------~~~L~i  154 (248)
                      |++||||||||||||+++|+++++.  ..++++|+|||+ .++++++|||||||+||+|+++|+.++       ++.+++
T Consensus         1 M~ikigINGFGRIGR~vlR~~~~~~~~~~~i~iv~Ind~~~~~~~~ayLlkyDSvhG~~~~~v~~~~~~~~~~~~~~~i~   80 (190)
T d1k3ta1           1 MPIKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYEVTTTKSSPSVAKDDTLVV   80 (190)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCBTTTEEEEEEEESCCCHHHHHHHHHEETTTEECSSCEEEECSSTTCSSCCEEEE
T ss_pred             CCeEEEEECCChHHHHHHHHHHHcCCCCCCeEEEEEecCCCCHHHHHHHhhccccccCCCceEEEccCccccccccceEE
Confidence            6799999999999999999999874  357999999998 799999999999999999999999752       456889


Q ss_pred             CCeEEE-EEecCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCe
Q 025797          155 DGKLIK-VVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVAN  233 (248)
Q Consensus       155 nGk~I~-v~~~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~  233 (248)
                      +|+.|. +++++||+++||+++|+||||||||+|+++++++.||++||||||||||+++ ++|||||||||++|++++|+
T Consensus        81 ~g~~i~~~~~~~~p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~GakkViiSAP~~~-~~~tiV~GVN~~~y~~~~~~  159 (190)
T d1k3ta1          81 NGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPASG-GAKTLVMGVNHHEYNPSEHH  159 (190)
T ss_dssp             TTEEEEEEECCSCGGGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBS-SCEECCTTTTGGGCCTTTCS
T ss_pred             cCceEEecccCCChhHCCHhhcCCcEEEEecccccccccchhhcccCcceeeeccCCcc-cCCeEEeccCHhhcCCccCc
Confidence            998775 5679999999999999999999999999999999999999999999999987 78999999999999986589


Q ss_pred             EEeecC--Ccc
Q 025797          234 IVRSWM--KNW  242 (248)
Q Consensus       234 IISnAS--~~~  242 (248)
                      ||||||  +||
T Consensus       160 IIS~ASCTtn~  170 (190)
T d1k3ta1         160 VVSNADNEWGY  170 (190)
T ss_dssp             EEECCCTTHHH
T ss_pred             EEEchhHhhhH
Confidence            999999  788

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=100.00  E-value=3.8e-59  Score=395.76  Aligned_cols=148  Identities=41%  Similarity=0.675  Sum_probs=141.8

Q ss_pred             eEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC-CChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCC
Q 025797           88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD  166 (248)
Q Consensus        88 kV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~-~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~d  166 (248)
                      ||||||||||||+++|+++++   ++++|+|||+ .++++++|||||||+||+|+++|++ +++.|++||++|+++++++
T Consensus         2 kIgINGfGRIGR~~~R~~~~~---~~~ivaINd~~~~~~~~~yLlkyDS~hG~~~~~i~~-~~~~l~ing~~I~~~~~~~   77 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAALEM---GAQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKA-EDGALVVDGKKITVFNEMK   77 (169)
T ss_dssp             CEEEECCSHHHHHHHHHHHHH---TCCEEEEECTTSCHHHHHHHHHCCTTTCCCSSCEEE-ETTEEEETTEEEEEECCSS
T ss_pred             eEEEECCcHHHHHHHHHHHhC---CCcEEEECCCCcCHHHHHHHHhcccccCCcCCeEEE-eCCEEEECCEEEEEEecCC
Confidence            799999999999999999975   5899999997 7999999999999999999999998 5789999999999999999


Q ss_pred             CCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--Ccc
Q 025797          167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--KNW  242 (248)
Q Consensus       167 P~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~~~  242 (248)
                      |+++||.++|+||||||||+|++.+++++||++||||||||||+|  |+|||||||||++|+++ ++||||||  +||
T Consensus        78 p~~i~W~~~gvD~ViEcTG~f~~~~~~~~hl~~gakkViisaP~~--d~~~iV~GVN~~~~~~~-~~IIS~aSCTtn~  152 (169)
T d1dssg1          78 PENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIISAPSA--DAPMFVCGVNLEKYSKD-MKVVSNASNEFGY  152 (169)
T ss_dssp             GGGCCHHHHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEESSCCS--SSCBCCTTTSGGGCCTT-CCEEECCCTTHHH
T ss_pred             hHHCCccccCCCEEEecCceEcCHHHHHHHHhcCCceEeecCCcc--ccceeeecccccccCCC-CCEEEChhHHHHH
Confidence            999999999999999999999999999999999999999999997  47899999999999987 99999999  887

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=7.1e-40  Score=277.74  Aligned_cols=141  Identities=17%  Similarity=0.113  Sum_probs=115.1

Q ss_pred             eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhh-ccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797           86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHL-LKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN  164 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayL-LkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~  164 (248)
                      ++||||||||||||+++|+++++  +++++|+|||+.+.....|| .++|++|+.++..+.. +++.+.++|        
T Consensus         1 MIKVaINGfGRIGR~v~Ral~~~--~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~v~g--------   69 (178)
T d1b7go1           1 MVNVAVNGYGTIGKRVADAIIKQ--PDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKF-EESGIPVAG--------   69 (178)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTC--TTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHH-HTTTCCCCC--------
T ss_pred             CeEEEEECCCHHHHHHHHHHHhC--CCCEEEEEECCCCcHHHHHhcccCcceeccCccceec-cccceecCC--------
Confidence            37999999999999999999986  47999999998544444444 4566778888877665 456666665        


Q ss_pred             CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCC-CCeEEeecCCCCCCC-CCCeEEeecC--C
Q 025797          165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGAD-IPTYVVGVNEKDYDH-EVANIVRSWM--K  240 (248)
Q Consensus       165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D-~ptiV~GVN~~~y~~-~~~~IISnAS--~  240 (248)
                          +++|...++|+||||||.|+++++++.||++| +|||+++|+|+++ ++||||||||++|.+ +.++||||||  +
T Consensus        70 ----~~~~~~~~vDiViecTG~f~~~e~a~~hl~~G-~KvIi~~~~~~~~~~~t~V~GvN~~~~~~~~~~~vVSnAsctt  144 (178)
T d1b7go1          70 ----TVEDLIKTSDIVVDTTPNGVGAQYKPIYLQLQ-RNAIFQGGEKAEVADISFSALCNYNEALGKKYIRVVSESIVVP  144 (178)
T ss_dssp             ----CHHHHHHHCSEEEECCSTTHHHHHHHHHHHTT-CEEEECTTSCGGGSSCEECHHHHHHHHTTCSEEEECCTTTHHH
T ss_pred             ----chhhhhhcCCEEEECCCCcCCHHHHHHHHHcC-CEEEEECCCCccccCCeEEeCcchHHhcCCCCCEEEeCCcccc
Confidence                46888889999999999999999999999999 6899999998632 469999999999643 3137999999  8


Q ss_pred             cc
Q 025797          241 NW  242 (248)
Q Consensus       241 ~~  242 (248)
                      ||
T Consensus       145 n~  146 (178)
T d1b7go1         145 EN  146 (178)
T ss_dssp             HH
T ss_pred             cc
Confidence            87

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=1.8e-39  Score=273.41  Aligned_cols=144  Identities=15%  Similarity=0.114  Sum_probs=111.6

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhcccc-CcCcccCceEEEecCCcEEECCeEEEEEe
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYD-SLLGTFKADVKIVDNETISVDGKLIKVVS  163 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYD-StHGkf~g~V~v~e~~~L~inGk~I~v~~  163 (248)
                      |++||||||||||||+++|+++++  +++++|+|||+.+.+...||++|| +.|+.+...+....+..+.+         
T Consensus         1 M~irIaINGfGRIGR~v~Ral~~~--~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------   69 (172)
T d2czca2           1 MKVKVGVNGYGTIGKRVAYAVTKQ--DDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEV---------   69 (172)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHTC--TTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCC---------
T ss_pred             CcEEEEEECCCHHHHHHHHHHHhC--CCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccc---------
Confidence            789999999999999999999875  579999999987777778888876 33333333222111122222         


Q ss_pred             cCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--Cc
Q 025797          164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--KN  241 (248)
Q Consensus       164 ~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~~  241 (248)
                         +.+++|...++|+||||||.|++.+.++.||++|+||||+++|.++.-++||||||||++|.+.++.+||++|  +|
T Consensus        70 ---~~~~~~~~~~vDvViEcTG~f~~~~~~~~hl~~G~k~Vi~s~~~~~~~~~t~v~GvNh~~~~~~~~~~v~scsctTn  146 (172)
T d2czca2          70 ---AGTLNDLLEKVDIIVDATPGGIGAKNKPLYEKAGVKAIFQGGEKADVAEVSFVAQANYEAALGKNYVRVVVIPENID  146 (172)
T ss_dssp             ---SCBHHHHHTTCSEEEECCSTTHHHHHHHHHHHHTCEEEECTTSCGGGSSEEECHHHHGGGGTTCSEEEECTHHHHHH
T ss_pred             ---cchhhhhhccCCEEEECCCCCCCHHHHHHHHHcCCCEEEECCCCcccCCCeeEecccchhhcCCCceEEEecCchHH
Confidence               3356666669999999999999999999999999999999999865334899999999999776345577777  77


Q ss_pred             c
Q 025797          242 W  242 (248)
Q Consensus       242 ~  242 (248)
                      |
T Consensus       147 ~  147 (172)
T d2czca2         147 A  147 (172)
T ss_dssp             H
T ss_pred             H
Confidence            7

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=100.00  E-value=2.1e-39  Score=273.12  Aligned_cols=141  Identities=21%  Similarity=0.158  Sum_probs=109.9

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhcccc-CcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYD-SLLGTFKADVKIVDNETISVDGKLIKVVSNR  165 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYD-StHGkf~g~V~v~e~~~L~inGk~I~v~~~~  165 (248)
                      +||||||||||||+++|++.++  +++++|+|||..+.....||++|| +.|+.+...+...++..+.++|+        
T Consensus         2 ~~VgINGfGRIGR~v~R~l~~~--~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~--------   71 (171)
T d1cf2o1           2 KAVAINGYGTVGKRVADAIAQQ--DDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGT--------   71 (171)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTS--SSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEE--------
T ss_pred             eEEEEEcCcHHHHHHHHHHHhC--CCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCC--------
Confidence            5999999999999999998875  469999999987666778888887 44565554444333445656553        


Q ss_pred             CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCC-CCeEEeecCCCCCCCCCCeEEeecC--Ccc
Q 025797          166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGAD-IPTYVVGVNEKDYDHEVANIVRSWM--KNW  242 (248)
Q Consensus       166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D-~ptiV~GVN~~~y~~~~~~IISnAS--~~~  242 (248)
                          ++|-..++|+||||||.|++.+++++||++|+| ||+++|++.++ +.||||||||++|.+.++.||||||  +||
T Consensus        72 ----~~~~~~~vDvViEcTG~f~~~~~~~~hl~~G~K-~vi~~~~~~~~~~~~~v~GvN~~~~~~~~~~ivS~aSCTTNc  146 (171)
T d1cf2o1          72 ----VDDMLDEADIVIDCTPEGIGAKNLKMYKEKGIK-AIFQGGEKHEDIGLSFNSLSNYEESYGKDYTRVVIVPENVDA  146 (171)
T ss_dssp             ----HHHHHHTCSEEEECCSTTHHHHHHHHHHHTTCE-EEECTTSCHHHHSCEECHHHHHHHHTTCSEEEECTHHHHHHH
T ss_pred             ----hhHhhcCCCEEEEccCCCCCHHHHHHHHHcCCC-EEEECCCCccCCCceeEeccChhhhcCCCCcEEEECCchHHh
Confidence                344445899999999999999999999999975 55555554322 3589999999999876578999999  888

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=97.55  E-value=5.5e-05  Score=60.15  Aligned_cols=88  Identities=20%  Similarity=0.186  Sum_probs=58.4

Q ss_pred             eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797           86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR  165 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~  165 (248)
                      ++||||.|+|+|||.+++.+.+  .+++++|+|.|... +..       ..+     .+..                 ..
T Consensus         3 kirvgiiG~G~ig~~~~~~l~~--~~~~elvav~~~~~-~~~-------~~~-----~~~~-----------------~~   50 (170)
T d1f06a1           3 NIRVAIVGYGNLGRSVEKLIAK--QPDMDLVGIFSRRA-TLD-------TKT-----PVFD-----------------VA   50 (170)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTT--CSSEEEEEEEESSS-CCS-------SSS-----CEEE-----------------GG
T ss_pred             cceEEEECChHHHHHHHHHHHh--CCCcEEEEEEeccc-ccc-------ccc-----cccc-----------------ch
Confidence            5899999999999999998765  35799999988632 110       000     1111                 11


Q ss_pred             CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCC
Q 025797          166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP  209 (248)
Q Consensus       166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAP  209 (248)
                      +..  .+. -.+|+|+.||.-+...+-+.+-|++|.. ||++.|
T Consensus        51 ~~~--~~~-~~~D~Vvi~tp~~~h~~~a~~aL~aG~~-vv~~~~   90 (170)
T d1f06a1          51 DVD--KHA-DDVDVLFLCMGSATDIPEQAPKFAQFAC-TVDTYD   90 (170)
T ss_dssp             GGG--GTT-TTCSEEEECSCTTTHHHHHHHHHTTTSE-EECCCC
T ss_pred             hhh--hhc-cccceEEEeCCCcccHHHHHHHHHCCCc-EEEecC
Confidence            111  111 2589999999999888888888887754 555544

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=96.91  E-value=0.00022  Score=57.06  Aligned_cols=127  Identities=22%  Similarity=0.233  Sum_probs=66.7

Q ss_pred             ceeeEEEeCCChhhHH-HHHHHhhCCCCCeEEEEEeCCC-ChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEE
Q 025797           85 AKLKVAINGFGRIGRN-FLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVV  162 (248)
Q Consensus        85 ~~vkV~INGFGRIGRl-vlR~~~~~~~~~l~iVaIND~~-~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~  162 (248)
                      .++||||.|-|.||+. +.+++..  .+.++++++-+.. .-..+.+-=       +|.-.+..  ++ +  ++    + 
T Consensus         3 kkirvaIIGaG~ig~~~~~~~l~~--~~~~el~avas~~~~~~~~~~a~-------~~~i~~~~--~~-~--d~----l-   63 (157)
T d1nvmb1           3 QKLKVAIIGSGNIGTDLMIKVLRN--AKYLEMGAMVGIDAASDGLARAQ-------RMGVTTTY--AG-V--EG----L-   63 (157)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHH--CSSEEEEEEECSCTTCHHHHHHH-------HTTCCEES--SH-H--HH----H-
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHhh--CCcceEEEEEecchhccchhhhh-------hcCCcccc--cc-e--ee----e-
Confidence            4689999999999985 5566533  3568999997641 111111100       11111110  00 0  00    0 


Q ss_pred             ecCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCE-EEEcCCCCCCCCCeEEeecCCCCCCCCC-CeEEeec
Q 025797          163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKK-VIITAPAKGADIPTYVVGVNEKDYDHEV-ANIVRSW  238 (248)
Q Consensus       163 ~~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKK-VIISAPsk~~D~ptiV~GVN~~~y~~~~-~~IISnA  238 (248)
                       ..+|   ++  .++|+|+.+|-.-...+....--.+.+.+ ||--.|.+  +.|.+|--||-+++...+ .++|+++
T Consensus        64 -~~~~---~~--~~iDiVf~ATpag~h~~~~~~~~aa~~G~~VID~s~a~--~vplvVPevN~~~~~~~~n~nlitc~  133 (157)
T d1nvmb1          64 -IKLP---EF--ADIDFVFDATSASAHVQNEALLRQAKPGIRLIDLTPAA--IGPYCVPVVNLEEHLGKLNVNMVTYA  133 (157)
T ss_dssp             -HHSG---GG--GGEEEEEECSCHHHHHHHHHHHHHHCTTCEEEECSTTC--SSCBCCHHHHTTTTTTCSEEECCCTC
T ss_pred             -eecc---cc--cccCEEEEcCCchhHHHhHHHHHHHHcCCEEEEccccc--cceEEccCcCHHHHhcCCCCCeEecC
Confidence             0111   12  37999999986533332222111123333 44445653  789999999988875431 2466553

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=96.73  E-value=0.0016  Score=52.08  Aligned_cols=35  Identities=26%  Similarity=0.452  Sum_probs=29.5

Q ss_pred             ceeeEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797           85 AKLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDS  121 (248)
Q Consensus        85 ~~vkV~INGF-GRIGRlvlR~~~~~~~~~l~iVaIND~  121 (248)
                      .++||+|+|+ ||+||.+++++.+.  +++++++.-+.
T Consensus         3 s~ikI~i~Ga~GrMG~~i~~~i~~~--~~~~lv~~~~~   38 (162)
T d1diha1           3 ANIRVAIAGAGGRMGRQLIQAALAL--EGVQLGAALER   38 (162)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHS--TTEECCCEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEec
Confidence            4689999995 99999999998864  46899888765

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.33  E-value=0.0037  Score=49.14  Aligned_cols=99  Identities=17%  Similarity=0.179  Sum_probs=61.0

Q ss_pred             eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797           86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR  165 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~  165 (248)
                      ++||||.|+|+||+..++.+...  +++++++|-|. +.+....+-+   .++..+ ..++               +  .
T Consensus         1 kiki~iIG~G~~g~~~~~~l~~~--~~~~i~ai~d~-~~~~~~~~~~---~~~~~~-~~~~---------------~--~   56 (184)
T d1ydwa1           1 QIRIGVMGCADIARKVSRAIHLA--PNATISGVASR-SLEKAKAFAT---ANNYPE-STKI---------------H--G   56 (184)
T ss_dssp             CEEEEEESCCTTHHHHHHHHHHC--TTEEEEEEECS-SHHHHHHHHH---HTTCCT-TCEE---------------E--S
T ss_pred             CeEEEEEcCCHHHHHHHHHHHhC--CCCEEEEEEeC-Cccccccchh---cccccc-ceee---------------c--C
Confidence            48999999999999999987643  47999999988 4443322211   111101 1111               0  0


Q ss_pred             CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                      |.+++ -.+..+|+|+-||.-....+-+..-|+.| +.|++--|.
T Consensus        57 ~~~~l-l~~~~iD~v~I~tp~~~h~~~~~~~l~~g-~~v~~EKP~   99 (184)
T d1ydwa1          57 SYESL-LEDPEIDALYVPLPTSLHVEWAIKAAEKG-KHILLEKPV   99 (184)
T ss_dssp             SHHHH-HHCTTCCEEEECCCGGGHHHHHHHHHTTT-CEEEECSSC
T ss_pred             cHHHh-hhccccceeeecccchhhcchhhhhhhcc-ceeeccccc
Confidence            11111 01235788888988877767666667777 578877664

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=95.93  E-value=0.0038  Score=49.22  Aligned_cols=98  Identities=20%  Similarity=0.237  Sum_probs=59.6

Q ss_pred             ceeeEEEeCCChhhHH-HHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEe
Q 025797           85 AKLKVAINGFGRIGRN-FLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS  163 (248)
Q Consensus        85 ~~vkV~INGFGRIGRl-vlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~  163 (248)
                      .++||||.|+|++|+. .++++... ...+++++|-|+ +.+....+.+.   +|   .. .+               + 
T Consensus         2 kkirigiIG~G~~g~~~h~~~l~~~-~~~~~i~~v~d~-~~~~~~~~~~~---~~---~~-~~---------------~-   56 (181)
T d1zh8a1           2 RKIRLGIVGCGIAARELHLPALKNL-SHLFEITAVTSR-TRSHAEEFAKM---VG---NP-AV---------------F-   56 (181)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHTT-TTTEEEEEEECS-SHHHHHHHHHH---HS---SC-EE---------------E-
T ss_pred             CCcEEEEEcCCHHHHHHHHHHHHhC-CCCeEEEEEEec-cHhhhhhhhcc---cc---cc-ce---------------e-
Confidence            3689999999999986 46766543 345899999988 33333322111   11   10 00               0 


Q ss_pred             cCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       164 ~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                       .|.+++ ..+..+|+|+-||-.....+-+..=|++| |.|++--|.
T Consensus        57 -~~~~el-l~~~~id~v~I~tp~~~h~~~~~~al~~g-k~V~~EKPl  100 (181)
T d1zh8a1          57 -DSYEEL-LESGLVDAVDLTLPVELNLPFIEKALRKG-VHVICEKPI  100 (181)
T ss_dssp             -SCHHHH-HHSSCCSEEEECCCGGGHHHHHHHHHHTT-CEEEEESSS
T ss_pred             -eeeecc-ccccccceeeccccccccccccccccccc-hhhhcCCCC
Confidence             011111 11235788888888776667777777777 778886664

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.22  E-value=0.035  Score=43.03  Aligned_cols=33  Identities=24%  Similarity=0.468  Sum_probs=27.8

Q ss_pred             eEEEeC-CChhhHHHHHHHhhCCCCCeEEEEEeCCC
Q 025797           88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSG  122 (248)
Q Consensus        88 kV~ING-FGRIGRlvlR~~~~~~~~~l~iVaIND~~  122 (248)
                      ||+|+| .||+|+.+.+++.+.  +++++++.-|..
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~--~~~~l~~~~d~~   34 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAA--DDLTLSAELDAG   34 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHS--TTSEEEEEECTT
T ss_pred             CEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEecC
Confidence            799999 699999999987764  469999988874

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.91  E-value=0.022  Score=43.63  Aligned_cols=30  Identities=23%  Similarity=0.572  Sum_probs=23.4

Q ss_pred             eeEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797           87 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVN  119 (248)
Q Consensus        87 vkV~INGF-GRIGRlvlR~~~~~~~~~l~iVaIN  119 (248)
                      +||+|+|+ ||+|+.+.+++.++   ..++++.-
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~---~~~l~~~i   31 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEK---GHELVLKV   31 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT---TCEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHhcC---CCeEEEEE
Confidence            58999997 99999999887653   46666553

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=94.57  E-value=0.025  Score=46.16  Aligned_cols=101  Identities=18%  Similarity=0.146  Sum_probs=61.1

Q ss_pred             ceeeEEEeCCChhhHH-HHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEe
Q 025797           85 AKLKVAINGFGRIGRN-FLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS  163 (248)
Q Consensus        85 ~~vkV~INGFGRIGRl-vlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~  163 (248)
                      .++||||.|+|.||+. +++++..  .+.+++++|-|. +.+.+..+.+.   ||-=.-.+.               .+ 
T Consensus        32 ~~iriaiIG~G~~~~~~~~~~~~~--~~~~~ivav~d~-~~~~a~~~~~~---~~i~~~~~~---------------~~-   89 (221)
T d1h6da1          32 RRFGYAIVGLGKYALNQILPGFAG--CQHSRIEALVSG-NAEKAKIVAAE---YGVDPRKIY---------------DY-   89 (221)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHTTT--CSSEEEEEEECS-CHHHHHHHHHH---TTCCGGGEE---------------CS-
T ss_pred             CCEEEEEEcCcHHHHHHHHHHHHh--CCCceEEEEecC-CHHHHHHHHHh---hcccccccc---------------cc-
Confidence            5799999999999974 5565432  357999999997 44444332211   110000111               11 


Q ss_pred             cCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       164 ~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                       .|..++ -.+-.+|+|+-||--....+-+..=|+.| |.|++=-|-
T Consensus        90 -~d~~el-l~~~~iD~V~I~tp~~~H~~~~~~al~~g-k~v~~EKPl  133 (221)
T d1h6da1          90 -SNFDKI-AKDPKIDAVYIILPNSLHAEFAIRAFKAG-KHVMCEKPM  133 (221)
T ss_dssp             -SSGGGG-GGCTTCCEEEECSCGGGHHHHHHHHHHTT-CEEEECSSC
T ss_pred             -Cchhhh-cccccceeeeeccchhhhhhHHHHhhhcc-hhhhcCCCc
Confidence             112221 01235788988999887777777777777 577776664

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.55  E-value=0.018  Score=42.93  Aligned_cols=29  Identities=24%  Similarity=0.589  Sum_probs=24.4

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEE
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV  118 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaI  118 (248)
                      |||.|-|+||+|+.++|.+.++   ..++++|
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~---g~~v~vi   29 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEK---GHDIVLI   29 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHC---CCCccee
Confidence            5899999999999999988764   4677766

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=94.22  E-value=0.033  Score=45.41  Aligned_cols=30  Identities=27%  Similarity=0.460  Sum_probs=24.3

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN  119 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN  119 (248)
                      .+|||.|||+||+.+++.+...   .++|++.+
T Consensus        44 k~vgIiG~G~IG~~va~~l~~f---g~~V~~~d   73 (197)
T d1j4aa1          44 QVVGVVGTGHIGQVFMQIMEGF---GAKVITYD   73 (197)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT---TCEEEEEC
T ss_pred             CeEEEecccccchhHHHhHhhh---cccccccC
Confidence            5899999999999999987543   36777664

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.04  E-value=0.095  Score=40.31  Aligned_cols=124  Identities=15%  Similarity=0.215  Sum_probs=70.7

Q ss_pred             eeeEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797           86 KLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN  164 (248)
Q Consensus        86 ~vkV~INGF-GRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~  164 (248)
                      |+||||-|- |-.|+-++|++.++.-+.++++.+--.             +..|+           .+...++.+.+.  
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~-------------~~~Gk-----------~i~~~~~~~~~~--   55 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASA-------------ESAGQ-----------RMGFAESSLRVG--   55 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECT-------------TTTTC-----------EEEETTEEEECE--
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeec-------------ccCCc-----------ceeeccccchhc--
Confidence            579999987 999999999986543345566655221             11122           122233333322  


Q ss_pred             CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCC-CCeEEeec
Q 025797          165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHE-VANIVRSW  238 (248)
Q Consensus       165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~-~~~IISnA  238 (248)
                       +++..+|.  ++|+|+=|++-=...+-...-++.|++-+=+|+--.-++.+-+|..+|.+.+... +.+||+|-
T Consensus        56 -~~~~~~~~--~~d~vf~a~p~~~s~~~~~~~~~~g~~VID~Ss~fR~~~~~~~vpevn~~~l~~~~~~~iIANP  127 (144)
T d2hjsa1          56 -DVDSFDFS--SVGLAFFAAAAEVSRAHAERARAAGCSVIDLSGALEPSVAPPVMVSVNAERLASQAAPFLLSSP  127 (144)
T ss_dssp             -EGGGCCGG--GCSEEEECSCHHHHHHHHHHHHHTTCEEEETTCTTTTTTSCBCCHHHHGGGGGGSCSSCEEECC
T ss_pred             -cchhhhhc--cceEEEecCCcchhhhhccccccCCceEEeechhhcccccccccccccHHHHHhccCCCEEccC
Confidence             23444564  6889988887655555444545567532223332221234557778888887532 14689873

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=93.97  E-value=0.053  Score=41.59  Aligned_cols=93  Identities=19%  Similarity=0.257  Sum_probs=55.4

Q ss_pred             eeEEEeCCChhhHH-HHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797           87 LKVAINGFGRIGRN-FLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR  165 (248)
Q Consensus        87 vkV~INGFGRIGRl-vlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~  165 (248)
                      +||||.|+|++|+. .++++..  .+.+++++ -|+ +.+....+-+.   ++.   . .               +  ..
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~--~~~~~~~~-~d~-~~~~~~~~~~~---~~~---~-~---------------~--~~   53 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQ--WPDIELVL-CTR-NPKVLGTLATR---YRV---S-A---------------T--CT   53 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTT--STTEEEEE-ECS-CHHHHHHHHHH---TTC---C-C---------------C--CS
T ss_pred             eEEEEEcCCHHHHHHHHHHHHh--CCCcEEEE-EEC-CHHHHHHHHHh---ccc---c-c---------------c--cc
Confidence            79999999999965 4555433  34678774 454 33333222111   110   0 0               0  01


Q ss_pred             CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                      |.+++-  +.++|.|+=||--..-.+-+..=|+.| |.|++--|.
T Consensus        54 ~~~~ll--~~~iD~V~I~tp~~~H~~~~~~al~~g-k~V~~EKP~   95 (167)
T d1xeaa1          54 DYRDVL--QYGVDAVMIHAATDVHSTLAAFFLHLG-IPTFVDKPL   95 (167)
T ss_dssp             STTGGG--GGCCSEEEECSCGGGHHHHHHHHHHTT-CCEEEESCS
T ss_pred             cHHHhc--ccccceecccccccccccccccccccc-cccccCCCC
Confidence            122221  236888888998888778888888888 568887775

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=93.61  E-value=0.031  Score=45.35  Aligned_cols=30  Identities=23%  Similarity=0.440  Sum_probs=24.1

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN  119 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN  119 (248)
                      .+|||.||||||+.+++.+...   .+++++.+
T Consensus        46 ktvgIiG~G~IG~~va~~l~~f---g~~v~~~d   75 (199)
T d1dxya1          46 QTVGVMGTGHIGQVAIKLFKGF---GAKVIAYD   75 (199)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT---TCEEEEEC
T ss_pred             eeeeeeeccccccccccccccc---ceeeeccC
Confidence            5899999999999999987543   46877664

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=93.57  E-value=0.018  Score=44.89  Aligned_cols=103  Identities=16%  Similarity=0.188  Sum_probs=55.5

Q ss_pred             eEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEe-cCCcEEECCeEEEEEecCC
Q 025797           88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIV-DNETISVDGKLIKVVSNRD  166 (248)
Q Consensus        88 kV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~-e~~~L~inGk~I~v~~~~d  166 (248)
                      +|.|.|.|.||.+.+.++..+. .+ +|+++ |. +.+.+..+.++    |   .+..++ .+..+.   ..+     +.
T Consensus        31 ~VlV~GaG~iG~~~~~~ak~~G-a~-~Vi~~-~~-~~~~~~~a~~l----G---a~~vi~~~~~~~~---~~~-----~~   91 (182)
T d1vj0a2          31 TVVIQGAGPLGLFGVVIARSLG-AE-NVIVI-AG-SPNRLKLAEEI----G---ADLTLNRRETSVE---ERR-----KA   91 (182)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT-BS-EEEEE-ES-CHHHHHHHHHT----T---CSEEEETTTSCHH---HHH-----HH
T ss_pred             EEEEECCCccchhheecccccc-cc-ccccc-cc-ccccccccccc----c---ceEEEeccccchH---HHH-----HH
Confidence            6999999999999998887542 11 55554 22 23333333332    2   111111 000000   000     00


Q ss_pred             CCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       167 P~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                      ..++ ....|+|+||||+|.-...+.+...++.|.+=|++-.+.
T Consensus        92 i~~~-~~~~g~Dvvid~vG~~~~~~~a~~~l~~~G~iv~~G~~~  134 (182)
T d1vj0a2          92 IMDI-THGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAV  134 (182)
T ss_dssp             HHHH-TTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCS
T ss_pred             HHHh-hCCCCceEEeecCCchhHHHHHHHHhcCCCEEEEEeecC
Confidence            0000 012489999999998766777777777776656664443

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=93.19  E-value=0.062  Score=43.50  Aligned_cols=31  Identities=19%  Similarity=0.310  Sum_probs=24.7

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND  120 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND  120 (248)
                      .+|||.|||+||+.++|.+...   .+++++...
T Consensus        50 ktvgIiG~G~IG~~va~~l~~f---g~~v~~~d~   80 (193)
T d1mx3a1          50 ETLGIIGLGRVGQAVALRAKAF---GFNVLFYDP   80 (193)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT---TCEEEEECT
T ss_pred             ceEEEeccccccccceeeeecc---ccceeeccC
Confidence            4799999999999999988643   478776543

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=92.90  E-value=0.1  Score=39.60  Aligned_cols=99  Identities=17%  Similarity=0.105  Sum_probs=54.8

Q ss_pred             eEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCCC
Q 025797           88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDP  167 (248)
Q Consensus        88 kV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~dP  167 (248)
                      +|.|.|.|.||.+.+.++...   ..+++++ |. +.+.+..+.++    |   .+..+.      .+.      ...++
T Consensus        29 ~vlV~G~G~vG~~~~~~ak~~---Ga~vi~v-~~-~~~r~~~a~~~----g---a~~~~~------~~~------~~~~~   84 (170)
T d1e3ja2          29 TVLVIGAGPIGLVSVLAAKAY---GAFVVCT-AR-SPRRLEVAKNC----G---ADVTLV------VDP------AKEEE   84 (170)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT---TCEEEEE-ES-CHHHHHHHHHT----T---CSEEEE------CCT------TTSCH
T ss_pred             EEEEEcccccchhhHhhHhhh---ccccccc-ch-HHHHHHHHHHc----C---CcEEEe------ccc------ccccc
Confidence            689999999999998887654   2477766 33 33444433333    2   111110      000      00001


Q ss_pred             CC----C-CCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          168 LQ----L-PWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       168 ~~----i-~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                      .+    + .....|+|+||||+|.-...+.+-..++.|.+=|++..|.
T Consensus        85 ~~~~~~~~~~~g~g~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~  132 (170)
T d1e3ja2          85 SSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGS  132 (170)
T ss_dssp             HHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCS
T ss_pred             chhhhhhhcccccCCceeeecCCChHHHHHHHHHHhcCCceEEEecCC
Confidence            00    0 0112479999999997655566656666666556665554

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.89  E-value=0.038  Score=42.95  Aligned_cols=97  Identities=14%  Similarity=0.128  Sum_probs=54.4

Q ss_pred             eEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCCC
Q 025797           88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDP  167 (248)
Q Consensus        88 kV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~dP  167 (248)
                      +|.|.|.|.||.+.+.++....   .+.|.+-|. +.+.+..+-++    |.   +-                ++..+++
T Consensus        31 ~VlI~G~G~iG~~~~~~ak~~g---~~~v~~~~~-~~~k~~~a~~~----Ga---~~----------------~i~~~~~   83 (174)
T d1f8fa2          31 SFVTWGAGAVGLSALLAAKVCG---ASIIIAVDI-VESRLELAKQL----GA---TH----------------VINSKTQ   83 (174)
T ss_dssp             EEEEESCSHHHHHHHHHHHHHT---CSEEEEEES-CHHHHHHHHHH----TC---SE----------------EEETTTS
T ss_pred             EEEEeCCCHHHhhhhhcccccc---cceeeeecc-HHHHHHHHHHc----CC---eE----------------EEeCCCc
Confidence            6999999999998888765431   234444444 23444433333    21   10                1111111


Q ss_pred             CCCC----CCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCC
Q 025797          168 LQLP----WAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAK  211 (248)
Q Consensus       168 ~~i~----W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk  211 (248)
                      +-..    -.+-|+|+||||+|.-...+.+...++.|-+=|++..|..
T Consensus        84 ~~~~~i~~~t~gg~D~vid~~G~~~~~~~~~~~~~~~G~i~~~G~~~~  131 (174)
T d1f8fa2          84 DPVAAIKEITDGGVNFALESTGSPEILKQGVDALGILGKIAVVGAPQL  131 (174)
T ss_dssp             CHHHHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEEEEEEECCCCST
T ss_pred             CHHHHHHHHcCCCCcEEEEcCCcHHHHHHHHhcccCceEEEEEeecCC
Confidence            1000    0123899999999987666666666666655566655543

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=92.17  E-value=0.081  Score=40.38  Aligned_cols=91  Identities=16%  Similarity=0.183  Sum_probs=54.8

Q ss_pred             eeeEEEeCCChhhHH-HHHHHhhCCCCCeEEEEEeCCC--ChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEE
Q 025797           86 KLKVAINGFGRIGRN-FLRCWHGRKDSPLDVVVVNDSG--GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVV  162 (248)
Q Consensus        86 ~vkV~INGFGRIGRl-vlR~~~~~~~~~l~iVaIND~~--~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~  162 (248)
                      ++||||.|+|++|+. .++++-.  .+++++++|-|+.  ..+..+.  +|+-.         ..+              
T Consensus         1 Kiri~iIG~G~~g~~~~~~~l~~--~~~~~i~~v~d~~~~~~~~~~~--~~~~~---------~~~--------------   53 (164)
T d1tlta1           1 KLRIGVVGLGGIAQKAWLPVLAA--ASDWTLQGAWSPTRAKALPICE--SWRIP---------YAD--------------   53 (164)
T ss_dssp             CEEEEEECCSTHHHHTHHHHHHS--CSSEEEEEEECSSCTTHHHHHH--HHTCC---------BCS--------------
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHh--CCCcEEEEEEechhHhhhhhhh--ccccc---------ccc--------------
Confidence            479999999999975 4665543  3569999999972  2333322  22110         000              


Q ss_pred             ecCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       163 ~~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                         +.+++.   ..+|+|+-||---...+-+..=|+.| |.|++--|-
T Consensus        54 ---~~~~l~---~~~D~V~I~tp~~~h~~~~~~al~~g-k~V~~EKPl   94 (164)
T d1tlta1          54 ---SLSSLA---ASCDAVFVHSSTASHFDVVSTLLNAG-VHVCVDKPL   94 (164)
T ss_dssp             ---SHHHHH---TTCSEEEECSCTTHHHHHHHHHHHTT-CEEEEESSS
T ss_pred             ---cchhhh---hhcccccccccchhcccccccccccc-ceeeccccc
Confidence               111110   14688888876655556666667777 678876664

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.01  E-value=0.2  Score=38.27  Aligned_cols=97  Identities=24%  Similarity=0.265  Sum_probs=56.9

Q ss_pred             eEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCCC
Q 025797           88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDP  167 (248)
Q Consensus        88 kV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~dP  167 (248)
                      +|.|.|.|.||.+.+.++..+. . -+|+++ |+ +.+.+....++    |   .+..+.              ..+.++
T Consensus        29 ~VlI~G~G~iG~~~~~~a~~~G-~-~~Vi~~-d~-~~~rl~~a~~~----G---a~~~~~--------------~~~~~~   83 (171)
T d1pl8a2          29 KVLVCGAGPIGMVTLLVAKAMG-A-AQVVVT-DL-SATRLSKAKEI----G---ADLVLQ--------------ISKESP   83 (171)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT-C-SEEEEE-ES-CHHHHHHHHHT----T---CSEEEE--------------CSSCCH
T ss_pred             EEEEECCCccHHHHHHHHHHcC-C-ceEEec-cC-CHHHHHHHHHh----C---Cccccc--------------cccccc
Confidence            6999999999999998876542 1 145544 33 33444333333    2   111111              011121


Q ss_pred             CCC------CCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          168 LQL------PWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       168 ~~i------~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                      .+.      .+ ..|+|+||||+|.-...+.+...++.|-+=|++..|+
T Consensus        84 ~~~~~~~~~~~-g~g~Dvvid~~G~~~~~~~a~~~~~~gG~iv~~G~~~  131 (171)
T d1pl8a2          84 QEIARKVEGQL-GCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGS  131 (171)
T ss_dssp             HHHHHHHHHHH-TSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCC
T ss_pred             ccccccccccC-CCCceEEEeccCCchhHHHHHHHhcCCCEEEEEecCC
Confidence            110      01 2489999999998767777777887777666666555

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.65  E-value=0.12  Score=40.41  Aligned_cols=37  Identities=24%  Similarity=0.408  Sum_probs=29.4

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCC-CCCeEEEEEeCC
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRK-DSPLDVVVVNDS  121 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~-~~~l~iVaIND~  121 (248)
                      ++++|+|.|||-+|+.++|.+.++. .-++++++|-+.
T Consensus         3 k~i~I~l~G~G~VG~~l~~~l~~~~~~l~~~v~~i~~s   40 (168)
T d1ebfa1           3 KVVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEA   40 (168)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECS
T ss_pred             CEEEEEEEeCCHHHHHHHHHHHHhHHHhhhheEEEEEe
Confidence            5799999999999999999887653 234677777654

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=91.31  E-value=0.096  Score=41.85  Aligned_cols=30  Identities=27%  Similarity=0.267  Sum_probs=23.8

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN  119 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN  119 (248)
                      .+|+|.|||+||+.+++.+...   .++|.+.+
T Consensus        43 k~vgIiG~G~IG~~va~~l~~~---g~~v~~~d   72 (181)
T d1qp8a1          43 EKVAVLGLGEIGTRVGKILAAL---GAQVRGFS   72 (181)
T ss_dssp             CEEEEESCSTHHHHHHHHHHHT---TCEEEEEC
T ss_pred             ceEEEeccccccccceeeeecc---cccccccc
Confidence            5799999999999999987643   35766654

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=90.95  E-value=0.077  Score=38.90  Aligned_cols=28  Identities=29%  Similarity=0.533  Sum_probs=22.8

Q ss_pred             eEEEeCCChhhHHHHHHHhhCCCCCeEEEEE
Q 025797           88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVV  118 (248)
Q Consensus        88 kV~INGFGRIGRlvlR~~~~~~~~~l~iVaI  118 (248)
                      ++.|-|+||+|+.+++.+..+   +.++++|
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~---g~~vvvi   29 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRM---GHEVLAV   29 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT---TCCCEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHC---CCeEEEe
Confidence            588999999999999988764   3566666

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=90.94  E-value=0.16  Score=39.55  Aligned_cols=100  Identities=23%  Similarity=0.168  Sum_probs=53.9

Q ss_pred             eEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEe-cCCcEEECCeEEEEEecCC
Q 025797           88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIV-DNETISVDGKLIKVVSNRD  166 (248)
Q Consensus        88 kV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~-e~~~L~inGk~I~v~~~~d  166 (248)
                      +|.|.|.|.||.+.+.++-... . -+|+++ |+ +.+.+....++    |   .+..++ +++.+.      .-+    
T Consensus        30 ~VlI~GaG~vGl~~~q~ak~~G-a-~~Vi~~-d~-~~~r~~~a~~l----G---a~~~i~~~~~~~~------~~v----   88 (174)
T d1jqba2          30 SVVVIGIGAVGLMGIAGAKLRG-A-GRIIGV-GS-RPICVEAAKFY----G---ATDILNYKNGHIE------DQV----   88 (174)
T ss_dssp             CEEEECCSHHHHHHHHHHHTTT-C-SCEEEE-CC-CHHHHHHHHHH----T---CSEEECGGGSCHH------HHH----
T ss_pred             EEEEEcCCcchhhhhhhhhccc-c-cccccc-cc-hhhhHHHHHhh----C---ccccccccchhHH------HHH----
Confidence            5999999999999888876431 1 134443 33 33444444333    2   111111 000000      000    


Q ss_pred             CCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       167 P~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                       .++. ...|+|+||||+|.-...+.+-..++.|-+=|++..|.
T Consensus        89 -~~~t-~g~G~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~  130 (174)
T d1jqba2          89 -MKLT-NGKGVDRVIMAGGGSETLSQAVKMVKPGGIISNINYHG  130 (174)
T ss_dssp             -HHHT-TTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCC
T ss_pred             -HHHh-hccCcceEEEccCCHHHHHHHHHHHhcCCEEEEEeecC
Confidence             0011 13589999999998666666666666666556665554

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=90.66  E-value=0.12  Score=39.14  Aligned_cols=32  Identities=25%  Similarity=0.493  Sum_probs=26.9

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS  121 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~  121 (248)
                      |||+|.|+|.+|+.++|.+.+.   .+++++.|+.
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~---g~~v~~~~~~   32 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSR---GVEVVTSLEG   32 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHT---TCEEEECCTT
T ss_pred             CEEEEEcHHHHHHHHHHHHHHC---CCeEEEEcCc
Confidence            5899999999999999998864   4788877764

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=90.48  E-value=0.13  Score=41.40  Aligned_cols=30  Identities=27%  Similarity=0.503  Sum_probs=23.7

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN  119 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN  119 (248)
                      .+|||.|||+||+.++|.+...   .+++++..
T Consensus        48 ~tvgIiG~G~IG~~va~~l~~f---g~~v~~~d   77 (191)
T d1gdha1          48 KTLGIYGFGSIGQALAKRAQGF---DMDIDYFD   77 (191)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT---TCEEEEEC
T ss_pred             cceEEeecccchHHHHHHHHhh---cccccccc
Confidence            5799999999999999987542   46766554

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=90.01  E-value=0.16  Score=38.52  Aligned_cols=40  Identities=18%  Similarity=0.282  Sum_probs=28.3

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhc
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLL  131 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLL  131 (248)
                      |||+|.|+|++|..++|.+.+.   ..+|++. |. +.+.+....
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~---g~~V~~~-d~-~~~~~~~a~   40 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRR---GHYLIGV-SR-QQSTCEKAV   40 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCEEEEE-CS-CHHHHHHHH
T ss_pred             CEEEEEeecHHHHHHHHHHHHC---CCEEEEE-EC-CchHHHHHH
Confidence            5899999999999999987653   4677766 55 333443333

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=89.62  E-value=0.18  Score=38.52  Aligned_cols=95  Identities=18%  Similarity=0.213  Sum_probs=54.0

Q ss_pred             eEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCCC
Q 025797           88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDP  167 (248)
Q Consensus        88 kV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~dP  167 (248)
                      +|.|.|.|-||.+.+..+...   ..++|++-..  .+.+..+.+.    |   .+..++                ..++
T Consensus        33 ~VlI~GaG~vG~~a~qlak~~---Ga~~i~~~~~--~~~~~~a~~l----G---ad~~i~----------------~~~~   84 (168)
T d1uufa2          33 KVGVVGIGGLGHMGIKLAHAM---GAHVVAFTTS--EAKREAAKAL----G---ADEVVN----------------SRNA   84 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT---TCEEEEEESS--GGGHHHHHHH----T---CSEEEE----------------TTCH
T ss_pred             EEEEeccchHHHHHHHHhhcc---cccchhhccc--hhHHHHHhcc----C---CcEEEE----------------Cchh
Confidence            699999999999888776543   3455654433  2222222222    2   111111                1122


Q ss_pred             CCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          168 LQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       168 ~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                      ....+...|+|+|+||+|.=.+.+.+-..+..|-+-|++..|+
T Consensus        85 ~~~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~  127 (168)
T d1uufa2          85 DEMAAHLKSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPA  127 (168)
T ss_dssp             HHHHTTTTCEEEEEECCSSCCCHHHHHTTEEEEEEEEECCCC-
T ss_pred             hHHHHhcCCCceeeeeeecchhHHHHHHHHhcCCEEEEeccCC
Confidence            2222233589999999997666666656666666666666565

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=89.54  E-value=0.17  Score=40.15  Aligned_cols=32  Identities=22%  Similarity=0.213  Sum_probs=25.0

Q ss_pred             eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797           86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND  120 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND  120 (248)
                      ..+|+|.|||+||+.+++.+...   .+++.+...
T Consensus        44 ~~~vgiiG~G~IG~~va~~l~~f---g~~v~~~d~   75 (188)
T d1sc6a1          44 GKKLGIIGYGHIGTQLGILAESL---GMYVYFYDI   75 (188)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT---TCEEEEECS
T ss_pred             ceEEEEeecccchhhhhhhcccc---cceEeeccc
Confidence            35899999999999999987643   467776653

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=88.94  E-value=0.029  Score=43.88  Aligned_cols=112  Identities=18%  Similarity=0.152  Sum_probs=67.6

Q ss_pred             eEEEeCC-ChhhHHHHHHHhhCC-CCCeEEEEEeCCC-ChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797           88 KVAINGF-GRIGRNFLRCWHGRK-DSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN  164 (248)
Q Consensus        88 kV~INGF-GRIGRlvlR~~~~~~-~~~l~iVaIND~~-~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~  164 (248)
                      ||||-|- |-.|+-++|.++++. -+..++++.-... .-+...+        +          .       +.+.+...
T Consensus         3 kVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~--------~----------~-------~~~~~~~~   57 (146)
T d1t4ba1           3 NVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSF--------G----------G-------TTGTLQDA   57 (146)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGG--------G----------T-------CCCBCEET
T ss_pred             EEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccc--------c----------C-------Cceeeecc
Confidence            8999997 999999998666542 2334666554321 1111100        0          0       00011111


Q ss_pred             CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC---CCCCCCeEEeecCCCCCC
Q 025797          165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA---KGADIPTYVVGVNEKDYD  228 (248)
Q Consensus       165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs---k~~D~ptiV~GVN~~~y~  228 (248)
                      .+  ..+|  .++|+|+=|++.=...+-+....++|.+.+||+--+   -++|.|++|-.||.+.++
T Consensus        58 ~~--~~~~--~~~DivF~a~~~~~s~~~~~~~~~~g~~~~VID~Ss~fR~~~dvplviPEVN~~~i~  120 (146)
T d1t4ba1          58 FD--LEAL--KALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVIT  120 (146)
T ss_dssp             TC--HHHH--HTCSEEEECSCHHHHHHHHHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHH
T ss_pred             cc--hhhh--hcCcEEEEecCchHHHHhhHHHHhcCCCeecccCCcccccCCCCcEECCCcCHHHHH
Confidence            11  1123  378999999887666666666677899888888655   234789999999987664

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=88.55  E-value=1.4  Score=33.41  Aligned_cols=122  Identities=20%  Similarity=0.250  Sum_probs=71.3

Q ss_pred             eeEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797           87 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR  165 (248)
Q Consensus        87 vkV~INGF-GRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~  165 (248)
                      .||||-|- |-.|+-++|++.+++-+..++..+...             +..|+   .+.        .......+.   
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~-------------~s~G~---~~~--------~~~~~~~~~---   54 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASA-------------RSAGK---SLK--------FKDQDITIE---   54 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECG-------------GGTTC---EEE--------ETTEEEEEE---
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccc-------------ccccc---ccc--------ccCCccccc---
Confidence            48999997 999999999987763233454444321             12232   111        112222121   


Q ss_pred             CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC-CCCCCCeEEeecCCCCCCCCCCeEEeec
Q 025797          166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA-KGADIPTYVVGVNEKDYDHEVANIVRSW  238 (248)
Q Consensus       166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs-k~~D~ptiV~GVN~~~y~~~~~~IISnA  238 (248)
                      ++.+.+|  ..+|+|+=|++.-...+.+..-++.|.+=|=+|+-- -+++.|..+..+|.+.++.. .++|+|.
T Consensus        55 ~~~~~~~--~~~d~~f~~~~~~~s~~~~~~~~~~~~~VIDlSsdfR~~~~~~~~~pe~n~~~~~~~-~~iIAnP  125 (154)
T d2gz1a1          55 ETTETAF--EGVDIALFSAGSSTSAKYAPYAVKAGVVVVDNTSYFRQNPDVPLVVPEVNAHALDAH-NGIIACP  125 (154)
T ss_dssp             ECCTTTT--TTCSEEEECSCHHHHHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCHHHHGGGGGGC-CSEEECC
T ss_pred             ccchhhh--hhhhhhhhccCccchhhHHhhhccccceehhcChhhhccCCcccccchhhHHHhcCc-CceEECC
Confidence            1222333  467889888887666655555445555333333322 12366889999999998765 5799885

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=88.35  E-value=0.15  Score=38.28  Aligned_cols=96  Identities=21%  Similarity=0.181  Sum_probs=54.9

Q ss_pred             eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797           86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR  165 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~  165 (248)
                      +.+|.|+|.|..|+.+++.+. + ...+++|+.=|. +.+.          +|+             .++|.+|  +...
T Consensus         3 ~~~v~I~GaG~~G~~l~~~l~-~-~~~~~iv~fiDd-d~~k----------~G~-------------~I~Gi~V--~~~~   54 (126)
T d2dt5a2           3 KWGLCIVGMGRLGSALADYPG-F-GESFELRGFFDV-DPEK----------VGR-------------PVRGGVI--EHVD   54 (126)
T ss_dssp             CEEEEEECCSHHHHHHHHCSC-C-CSSEEEEEEEES-CTTT----------TTC-------------EETTEEE--EEGG
T ss_pred             CceEEEEcCCHHHHHHHHhHh-h-cCCcEEEEEEeC-chHh----------cCC-------------EECCEEE--ecHH
Confidence            469999999999999998643 2 356899988765 2211          122             2555444  3333


Q ss_pred             CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCC
Q 025797          166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAK  211 (248)
Q Consensus       166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk  211 (248)
                      +..++.  +..+++++=|.-.-...+-...-++.|.|-++--+|.+
T Consensus        55 ~l~~~~--~~~i~iai~~i~~~~~~~I~d~l~~~gIk~I~~f~~~~   98 (126)
T d2dt5a2          55 LLPQRV--PGRIEIALLTVPREAAQKAADLLVAAGIKGILNFAPVV   98 (126)
T ss_dssp             GHHHHS--TTTCCEEEECSCHHHHHHHHHHHHHHTCCEEEECSSSC
T ss_pred             HHHHHH--hhcccEEEEeCCHHHHHHHHHHHHHcCCCEEeecCcee
Confidence            222221  23466766665443223333333456998776556653

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=88.24  E-value=0.22  Score=39.48  Aligned_cols=30  Identities=23%  Similarity=0.277  Sum_probs=23.7

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN  119 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN  119 (248)
                      .+|+|.|+|+||+.++|.+...   .+++++..
T Consensus        45 ~~vgiiG~G~IG~~va~~l~~f---g~~v~~~d   74 (188)
T d2naca1          45 MHVGTVAAGRIGLAVLRRLAPF---DVHLHYTD   74 (188)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGG---TCEEEEEC
T ss_pred             cceeeccccccchhhhhhhhcc---CceEEEEe
Confidence            5899999999999999987542   35766654

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=87.90  E-value=0.26  Score=37.51  Aligned_cols=30  Identities=23%  Similarity=0.408  Sum_probs=24.4

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN  119 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN  119 (248)
                      |||||.|+|.+|+.+++.+...   .+++++-|
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~---G~~V~~~d   30 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKA---GYSLVVSD   30 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT---TCEEEEEC
T ss_pred             CEEEEEehhHHHHHHHHHHHHC---CCeEEEEe
Confidence            5899999999999999988763   46766554

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=87.49  E-value=0.32  Score=35.84  Aligned_cols=32  Identities=22%  Similarity=0.222  Sum_probs=26.4

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS  121 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~  121 (248)
                      .+|.|.|.|++|+.+++.+.+.   ..+|+++|..
T Consensus         3 K~IliiGaG~~G~~~a~~L~~~---g~~V~v~dr~   34 (182)
T d1e5qa1           3 KSVLMLGSGFVTRPTLDVLTDS---GIKVTVACRT   34 (182)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTT---TCEEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHhC---CCEEEEEECC
Confidence            3799999999999999988753   4688888865

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.45  E-value=0.29  Score=38.82  Aligned_cols=32  Identities=25%  Similarity=0.265  Sum_probs=24.9

Q ss_pred             eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797           86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND  120 (248)
Q Consensus        86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND  120 (248)
                      ..+|+|.|||+||+.++|.+...   .++|++.+.
T Consensus        44 ~k~vgiiG~G~IG~~va~~~~~f---g~~v~~~d~   75 (184)
T d1ygya1          44 GKTVGVVGLGRIGQLVAQRIAAF---GAYVVAYDP   75 (184)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTT---TCEEEEECT
T ss_pred             ceeeeeccccchhHHHHHHhhhc---cceEEeecC
Confidence            35899999999999999987542   368776653

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=85.99  E-value=0.51  Score=38.11  Aligned_cols=101  Identities=9%  Similarity=0.105  Sum_probs=59.3

Q ss_pred             cceeeEEEeCCCh----hhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhc-cccCcCcccCceEEEecCCcEEECCeE
Q 025797           84 VAKLKVAINGFGR----IGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLL-KYDSLLGTFKADVKIVDNETISVDGKL  158 (248)
Q Consensus        84 ~~~vkV~INGFGR----IGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLL-kYDStHGkf~g~V~v~e~~~L~inGk~  158 (248)
                      ..|+||||.|+|-    +++.-+.++... .+++++|+|-|+ +.+....+. +|    |.-...+-             
T Consensus        14 ~k~irvgiIG~G~~~~~~~~~h~~ai~~~-~~~~~ivav~d~-~~~~~~~~~~~~----~~~~~~~~-------------   74 (237)
T d2nvwa1          14 SRPIRVGFVGLTSGKSWVAKTHFLAIQQL-SSQFQIVALYNP-TLKSSLQTIEQL----QLKHATGF-------------   74 (237)
T ss_dssp             GCCEEEEEECCCSTTSHHHHTHHHHHHHT-TTTEEEEEEECS-CHHHHHHHHHHT----TCTTCEEE-------------
T ss_pred             CCCeEEEEEecCccccHHHHHHHHHHHhc-CCCeEEEEEEcC-CHHHHHHHHHhc----ccccceee-------------
Confidence            4679999999985    555555555443 357999999998 444433322 22    11111110             


Q ss_pred             EEEEecCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCC-----CEEEEcCCC
Q 025797          159 IKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA-----KKVIITAPA  210 (248)
Q Consensus       159 I~v~~~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GA-----KKVIISAPs  210 (248)
                            .+.+++- .+-.+|+|+-||--....+.+..=|++|.     |-|++=-|-
T Consensus        75 ------~~~~~l~-~~~~iD~V~i~tp~~~h~~~~~~al~aG~~~~~~k~V~~EKPl  124 (237)
T d2nvwa1          75 ------DSLESFA-QYKDIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWAL  124 (237)
T ss_dssp             ------SCHHHHH-HCTTCSEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSS
T ss_pred             ------cchhhcc-cccccceeeccCCCcchhhHHHHHHHhcccccCCceEEEeccc
Confidence                  1122221 12357888888877777676666777775     567766563

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=85.08  E-value=0.66  Score=34.76  Aligned_cols=42  Identities=19%  Similarity=0.226  Sum_probs=29.8

Q ss_pred             eEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhcc
Q 025797           88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLK  132 (248)
Q Consensus        88 kV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLk  132 (248)
                      ||+|.|+|.||-.++|.+... ....+|.++ |. +.+.+.++.+
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~-g~~~~I~~~-D~-~~~~~~~a~~   44 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRS-GFKGKIYGY-DI-NPESISKAVD   44 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHT-TCCSEEEEE-CS-CHHHHHHHHH
T ss_pred             EEEEEccCHHHHHHHHHHHhc-CCCeEEEEE-EC-ChHHHHHHHH
Confidence            699999999999999998754 334677776 44 3444544443

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=84.08  E-value=0.43  Score=36.46  Aligned_cols=41  Identities=22%  Similarity=0.404  Sum_probs=28.9

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhcc
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLK  132 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLk  132 (248)
                      |||||.|+|++|..++|.+.+.   ..++.+-| . +.+.+..|.+
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~---G~~V~~~d-r-~~~~~~~l~~   42 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEK---GFKVAVFN-R-TYSKSEEFMK   42 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT---TCCEEEEC-S-SHHHHHHHHH
T ss_pred             CEEEEEeehHHHHHHHHHHHHC---CCeEEEEE-C-CHHHHHHHHH
Confidence            5899999999999999998864   36666554 3 3344444433

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=83.83  E-value=0.52  Score=36.61  Aligned_cols=31  Identities=16%  Similarity=0.180  Sum_probs=21.8

Q ss_pred             eEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797           88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS  121 (248)
Q Consensus        88 kV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~  121 (248)
                      +|.|.|-|.||.+.+.++...   .-..|.+-|+
T Consensus        31 ~VlV~G~G~iGl~a~~~ak~~---Ga~~Vi~~d~   61 (174)
T d1e3ia2          31 TCAVFGLGCVGLSAIIGCKIA---GASRIIAIDI   61 (174)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT---TCSEEEEECS
T ss_pred             EEEEECCChHHHHHHHHHHHh---CCceeeeecc
Confidence            699999999999888776543   2334445455

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=82.72  E-value=0.81  Score=35.24  Aligned_cols=100  Identities=14%  Similarity=0.146  Sum_probs=52.6

Q ss_pred             eEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEe--cCCcEEECCeEEEEEecC
Q 025797           88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIV--DNETISVDGKLIKVVSNR  165 (248)
Q Consensus        88 kV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~--e~~~L~inGk~I~v~~~~  165 (248)
                      +|.|.|.|.+|.+.+.++-...   ...|.+-|+ +.+.+....++    |   .+-.++  +.+....     .+    
T Consensus        30 ~VlV~GaGgvGl~a~~~ak~~G---~~~Vi~~d~-~~~kl~~a~~l----G---a~~~i~~~~~d~~~~-----~~----   89 (174)
T d1p0fa2          30 TCAVFGLGGVGFSAIVGCKAAG---ASRIIGVGT-HKDKFPKAIEL----G---ATECLNPKDYDKPIY-----EV----   89 (174)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHT---CSEEEEECS-CGGGHHHHHHT----T---CSEEECGGGCSSCHH-----HH----
T ss_pred             EEEEECCCchhHHHHHHHHHcC---CceeeccCC-hHHHHHHHHHc----C---CcEEEcCCCchhHHH-----HH----
Confidence            6999999999998887764331   233334444 23334333333    2   111111  1000000     00    


Q ss_pred             CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEE-cCCC
Q 025797          166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII-TAPA  210 (248)
Q Consensus       166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVII-SAPs  210 (248)
                         ....+.-|+|+||||+|.-...+.+...+..|.-++++ -.|.
T Consensus        90 ---~~~~~~~G~d~vid~~g~~~~~~~~~~~~~~~~G~~v~vG~~~  132 (174)
T d1p0fa2          90 ---ICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLAS  132 (174)
T ss_dssp             ---HHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCC
T ss_pred             ---HHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhcCceEEEEEec
Confidence               00112248999999999876666666666666556554 3444

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=81.73  E-value=0.79  Score=31.81  Aligned_cols=31  Identities=23%  Similarity=0.340  Sum_probs=23.7

Q ss_pred             eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797           87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND  120 (248)
Q Consensus        87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND  120 (248)
                      .||.|.|+|..|+.++|.+.++   ..++.+..+
T Consensus         6 K~v~ViGlG~sG~s~a~~L~~~---g~~v~~~D~   36 (93)
T d2jfga1           6 KNVVIIGLGLTGLSCVDFFLAR---GVTPRVMDT   36 (93)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT---TCCCEEEES
T ss_pred             CEEEEEeECHHHHHHHHHHHHC---CCEEEEeeC
Confidence            3799999999999999988775   245454444

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=81.57  E-value=0.59  Score=35.19  Aligned_cols=97  Identities=20%  Similarity=0.203  Sum_probs=52.5

Q ss_pred             eEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCC
Q 025797           88 KVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD  166 (248)
Q Consensus        88 kV~INGF-GRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~d  166 (248)
                      +|.|.|. |-||.+.++++....  ..+|+++ +. +.+.+..+.++    |   .+..++.+              ..|
T Consensus        30 ~vlV~G~~G~vG~~~~~~~~~~g--~~~V~~~-~~-~~~~~~~~~~~----G---a~~~i~~~--------------~~~   84 (170)
T d1jvba2          30 TLLVVGAGGGLGTMAVQIAKAVS--GATIIGV-DV-REEAVEAAKRA----G---ADYVINAS--------------MQD   84 (170)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHT--CCEEEEE-ES-SHHHHHHHHHH----T---CSEEEETT--------------TSC
T ss_pred             EEEEEeccccceeeeeecccccc--ccccccc-cc-chhhHHHHHHc----C---CceeeccC--------------CcC
Confidence            6999996 999998888766432  1244433 33 33444444332    2   12222100              011


Q ss_pred             CC----CCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          167 PL----QLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       167 P~----~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                      +.    +.. ...|+|+|+||+|.=...+.+-..++.|.+=|++..++
T Consensus        85 ~~~~~~~~~-~~~~~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~~  131 (170)
T d1jvba2          85 PLAEIRRIT-ESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFG  131 (170)
T ss_dssp             HHHHHHHHT-TTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECCSSC
T ss_pred             HHHHHHHHh-hcccchhhhcccccchHHHhhhhhcccCCEEEEecccc
Confidence            10    000 12378999999997555566666666665555555554

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.38  E-value=0.51  Score=36.01  Aligned_cols=92  Identities=18%  Similarity=0.193  Sum_probs=52.9

Q ss_pred             ceeeEEEeCCChhhHHHHHHHhhCC-CCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEe
Q 025797           85 AKLKVAINGFGRIGRNFLRCWHGRK-DSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS  163 (248)
Q Consensus        85 ~~vkV~INGFGRIGRlvlR~~~~~~-~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~  163 (248)
                      .++||+|.|+|.+|+..++++.... ...+.++.+.+..... ..+-++|.                             
T Consensus         6 ~k~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----------------------------   55 (172)
T d1lc0a1           6 GKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELG-SLDEVRQI-----------------------------   55 (172)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCC-EETTEEBC-----------------------------
T ss_pred             CCcEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchHHHH-HhhccCcC-----------------------------
Confidence            5789999999999998888764321 1234555444331100 00000000                             


Q ss_pred             cCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       164 ~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                        +.+++ ..+-.+|+|+=||--..-.+-+..-|+.| |.|++=-|-
T Consensus        56 --~~~e~-l~~~~iD~V~I~tp~~~H~~~~~~al~~g-k~V~~EKP~   98 (172)
T d1lc0a1          56 --SLEDA-LRSQEIDVAYICSESSSHEDYIRQFLQAG-KHVLVEYPM   98 (172)
T ss_dssp             --CHHHH-HHCSSEEEEEECSCGGGHHHHHHHHHHTT-CEEEEESCS
T ss_pred             --CHHHH-HhCCCcchhhhcccccccccccccccccc-hhhhcCCCc
Confidence              00000 12236788888887766667677777787 568877664

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=80.98  E-value=1.2  Score=32.94  Aligned_cols=32  Identities=22%  Similarity=0.495  Sum_probs=24.6

Q ss_pred             eeeEEEeC-CChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797           86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND  120 (248)
Q Consensus        86 ~vkV~ING-FGRIGRlvlR~~~~~~~~~l~iVaIND  120 (248)
                      ..||+|.| +|.||+.++|.+...   ..++.+.+-
T Consensus         9 ~~kI~iIGg~G~mG~~la~~L~~~---G~~V~~~d~   41 (152)
T d2pv7a2           9 IHKIVIVGGYGKLGGLFARYLRAS---GYPISILDR   41 (152)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTT---TCCEEEECT
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHHc---CCCcEeccc
Confidence            35899999 999999999987653   356665543

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=80.55  E-value=2.6  Score=31.35  Aligned_cols=36  Identities=19%  Similarity=0.103  Sum_probs=26.3

Q ss_pred             CcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797          175 LGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  210 (248)
Q Consensus       175 ~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs  210 (248)
                      .|+|+|+||+|.-...+.+...++.|-..|++-.+.
T Consensus        97 ~g~D~vid~~G~~~~~~~~~~~~~~g~~~~~v~~~~  132 (176)
T d2fzwa2          97 GGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVA  132 (176)
T ss_dssp             SCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCC
T ss_pred             CCCcEeeecCCCHHHHHHHHHhhcCCceeEEEEeec
Confidence            589999999997666666666666677777765543

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=80.05  E-value=0.88  Score=34.49  Aligned_cols=96  Identities=17%  Similarity=0.153  Sum_probs=51.6

Q ss_pred             eEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCCC
Q 025797           88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDP  167 (248)
Q Consensus        88 kV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~dP  167 (248)
                      .|.|.|.|.+|.+.+.++-.+.  .-.++++ |. +.+++..+.++    |   ++..++..+              .++
T Consensus        35 ~vli~GaG~vG~~~~~~a~~~g--~~~vv~~-~~-~~~k~~~~~~~----g---a~~~i~~~~--------------~~~   89 (172)
T d1h2ba2          35 YVAIVGVGGLGHIAVQLLKVMT--PATVIAL-DV-KEEKLKLAERL----G---ADHVVDARR--------------DPV   89 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHC--CCEEEEE-ES-SHHHHHHHHHT----T---CSEEEETTS--------------CHH
T ss_pred             EEEEeCCChHHHHHHHHHHhhc--Ccccccc-cc-hhHHHHHHhhc----c---cceeecCcc--------------cHH
Confidence            5999999999998888764331  1233433 33 23444444333    2   111111000              001


Q ss_pred             CCCCC--CCCcccEEecCcccccCchhhhHHHHcCCCEEEEcC
Q 025797          168 LQLPW--AELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA  208 (248)
Q Consensus       168 ~~i~W--~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISA  208 (248)
                      +++.+  ...|+|+||||+|.-...+.+-..++.|.+=|++-.
T Consensus        90 ~~~~~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~  132 (172)
T d1h2ba2          90 KQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRMGRLIIVGY  132 (172)
T ss_dssp             HHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEEEEEEEEECCC
T ss_pred             HHHHHhhCCCCceEEEEecCcchHHHHHHHHHhCCCEEEEEeC
Confidence            10000  124899999999976666666666666655454433