Citrus Sinensis ID: 025808

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------
Protein Sequence
MGLYQYYLLSVMLLLPALCYSHYTSTYSRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVSRLWKNGTGCGACYQVRCKVPQLCTDYGVYVVVTDYGEGDKTDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAGVAYESEIQLK
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccccccccccccccccccccccEEEccccccccccccccEEEEEEccccccccccEEEEEEEccccccccccccHHHHHcccccHHHHHHHHccEEEEEEEEEccccccccEEEEEEcccccccccEEEEEEEcccccEEEEEEEEcccccEEEccccccccccccccccccccEEEEEEEccccEEEEEccccccccccccEEEcccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHccccccccccEEEEEccccccccccccccccccccccccccHHHHHHHcccccccccEEEEEEccccccccccEEEEEEcccccccccccccccccccHHHHHHHHHHHHcccEEEEEEEEcccccccEEEEEEcccccccEEEEEEEEEccccccEEEEEEEEccccccEEcccccccccccccccccccEEEEEEEEccccEEEEEccccccccccccEEEEcEEcc
Coil and Loop (DISEMBL)
MGLYQYYLLSVMLLLPALCYshytstysratyygspdslgtptgacgfgeygrtvndanVAGVSRLwkngtgcgacyqvrckvpqlctdyGVYVVVTdygegdktdfilspraygrmalpdksaelysygvvnvefrrvpcwykgynlqfkvhensryphYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGavfdissppegaISLRFQVSGSAGLTWVVAnnaipsdwkaGVAYESEIQLK
Flexible Loop (DISEMBL)
MGLYQYYLLSVMLLLPALCYSHYTSTYSRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVSRLWKNGTGCGACYQVRCKVPQLCTDYGVYVVVTDYGEGDKTDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAGVAYESEIQLK
Low Complexity Region (SEG)
MGLYQYYLLSVMLLLPALCYSHYTSTYSRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVSRLWKNGTGCGACYQVRCKVPQLCtdygvyvvvtdygegdKTDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAGVAYESEIQLK
Disordered region (IsUnstruct)
**LYQYYLLSVMLLLPALCYSHYTSTYSRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVSRLWKNGTGCGACYQVRCKVPQLCTDYGVYVVVTDYGEGDKTDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAGVAY*******
Disordered Region (DISOPRED)
*GLYQYYLLSVMLLLPALCYSHYTSTYSRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVSRLWKNGTGCGACYQVRCKVPQLCTDYGVYVVVTDYGEGDKTDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAGVAYESEIQLK
Disordered Region (DISEMBL)
MGLYQYYLLSVMLLLPALCYSHYTSTYSRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVSRLWKNGTGCGACYQVRCKVPQLCTDYGVYVVVTDYGEGDKTDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAGVAYESEIQLK
Disordered Region (DISPRO)
MGLYQYYLLSVMLLLPALCYSHYTSTYSRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVSRLWKNGTGCGACYQVRCKVPQLCTDYGVYVVVTDYGEGDKTDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAGVAYESEIQLK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGLYQYYLLSVMLLLPALCYSHYTSTYSRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVSRLWKNGTGCGACYQVRCKVPQLCTDYGVYVVVTDYGEGDKTDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAGVAYESEIQLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	247	2.2.26 [Sep-21-2011]
O23547	250	Expansin-like B1 OS=Arabi	yes	no	0.963	0.952	0.620	7e-86
Q850K7	256	Expansin-like B1 OS=Oryza	yes	no	0.967	0.933	0.413	7e-49
Q10S70	279	Expansin-like A1 OS=Oryza	yes	no	0.878	0.777	0.391	3e-39
Q9SVE5	265	Expansin-like A2 OS=Arabi	no	no	0.753	0.701	0.404	6e-38
Q9LZT4	265	Expansin-like A1 OS=Arabi	no	no	0.753	0.701	0.396	4e-37
Q9LZT5	263	Expansin-like A3 OS=Arabi	no	no	0.753	0.707	0.393	7e-37
Q7XCL0	275	Expansin-like A2 OS=Oryza	no	no	0.995	0.894	0.352	2e-33
Q8H274	276	Expansin-like A3 OS=Oryza	no	no	0.753	0.673	0.368	3e-33
Q40638	267	Expansin-B1 OS=Oryza sati	no	no	0.874	0.808	0.346	7e-33
Q8H7T4	267	Expansin-B10 OS=Oryza sat	no	no	0.870	0.805	0.356	8e-33

>sp|O23547|EXLB1_ARATH Expansin-like B1 OS=Arabidopsis thaliana GN=EXLB1 PE=2 SV=2

 Score =  317 bits (811), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 149/240 (62%), Positives = 181/240 (75%), Gaps = 2/240 (0%)

Query: 8   LLSVMLLLPALCYSHYTSTYSRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVS-RL 66
            + V++LLP LC S      SRATYYGSPD    P G CG+GE+GR +N+  V+GVS RL
Sbjct: 11  FVQVIVLLPLLCLSD-DFVNSRATYYGSPDCKANPRGHCGYGEFGRDINNGEVSGVSWRL 69

Query: 67  WKNGTGCGACYQVRCKVPQLCTDYGVYVVVTDYGEGDKTDFILSPRAYGRMALPDKSAEL 126
           W NGTGCGACYQVRCK+P  C++ GVYVV TD GEGD TDFILSP+AYGRMA P    +L
Sbjct: 70  WNNGTGCGACYQVRCKIPPHCSEEGVYVVATDSGEGDGTDFILSPKAYGRMARPGTENQL 129

Query: 127 YSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQ 186
           YS+GVVNVE++R+PC Y GYNL +K+HE S  PHYLAI +LYV G ND+LAVE+WQED +
Sbjct: 130 YSFGVVNVEYQRIPCRYAGYNLVYKIHEKSYNPHYLAILVLYVGGVNDILAVEVWQEDCK 189

Query: 187 EWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAGVAYESEIQL 246
           EW  MRR FGAV D+ +PP G ++LRF V GSAG+ W+ + NAIP+DW AG  Y+S I L
Sbjct: 190 EWRRMRRVFGAVHDLQNPPRGTLTLRFLVYGSAGINWIQSPNAIPADWTAGATYDSNILL 249

Arabidopsis thaliana (taxid: 3702)

>sp|Q850K7|EXLB1_ORYSJ Expansin-like B1 OS=Oryza sativa subsp. japonica GN=EXLB1 PE=2 SV=2

 Score =  194 bits (492), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 101/244 (41%), Positives = 145/244 (59%), Gaps = 5/244 (2%)

Query: 8   LLSVMLLLPALCYSHYTSTYSRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVSRLW 67
           +LS++L L +   +    T SRA YY + D  GT  GAC +G +G T+N+ +V+  + L+
Sbjct: 12  ILSLILFL-SKATADANFTVSRAAYYPNSDIKGTENGACEYGAFGATLNNGDVSASASLY 70

Query: 68  KNGTGCGACYQVRCKVPQLCTDYGVYVVVTDYGEGDKTDFILSPRAYGRMALP-DKSAEL 126
           ++G GCGACYQVRC  P  C+  GV +V+TD G  D TDFILS  A+ RMA   D    L
Sbjct: 71  RDGVGCGACYQVRCTNPYYCSPNGVTIVITDSGASDGTDFILSQHAFTRMAQSTDAGTAL 130

Query: 127 YSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQ 186
            + GVV +E+RRV C Y   N+ FK+ E+S +P+YL   I Y  G  D++AV++ +    
Sbjct: 131 LTLGVVGIEYRRVSCTYPNKNIVFKITESSNFPNYLEFEIWYQQGNQDIIAVQLCETVNL 190

Query: 187 EWVAMRRAFGAVFDISSPPEGAISLRFQVSGSA---GLTWVVANNAIPSDWKAGVAYESE 243
               + R  GAV+   SPP G +S+R   S  A   G TW+V  N +P +W AG  Y+S 
Sbjct: 191 TCQLLSRTHGAVWAAVSPPSGPLSIRMLFSSGAPRGGDTWLVPTNIVPQNWTAGATYDSG 250

Query: 244 IQLK 247
           +Q++
Sbjct: 251 VQVQ 254

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q10S70|EXLA1_ORYSJ Expansin-like A1 OS=Oryza sativa subsp. japonica GN=EXLA1 PE=2 SV=1

 Score =  162 bits (409), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 87/222 (39%), Positives = 125/222 (56%), Gaps = 5/222 (2%)

Query: 28  SRATYYGSPDSLGTPTGACGFGEYGRTVNDAN--VAGVSRLWKNGTGCGACYQVRCKVPQ 85
           SRA YY S  SL    G+CG+G    T N      A    L++ G GCGACYQVRCK  +
Sbjct: 43  SRAAYYTS--SLTLTAGSCGYGTAAATFNGGGFLAAAGPALYRGGVGCGACYQVRCKDKK 100

Query: 86  LCTDYGVYVVVTDYGEGDKTDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKG 145
           LC++ G  VVVTD    ++T  +LS  A+  MA P  +A L     V+VE++RVPC Y+ 
Sbjct: 101 LCSNAGARVVVTDRARTNRTGLVLSSPAFAAMARPGMAASLTELAAVDVEYKRVPCEYRH 160

Query: 146 YNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPP 205
            +L  +V E SR P+ L I+ LY  GQ D++AV++ Q     W  M R  G  + +++ P
Sbjct: 161 RSLSVRVDERSRGPNELTISFLYQGGQTDIVAVDVAQVGSSSWKFMTREHGPSWSMANAP 220

Query: 206 EGAISLRFQVSGSAGLTWVVANNAI-PSDWKAGVAYESEIQL 246
            G + +R  V+G     WV A+  + P  W+AG  Y++ +Q+
Sbjct: 221 PGPLQMRLVVTGGYDGKWVWADREVLPRRWRAGEVYDTGVQI 262

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SVE5|EXLA2_ARATH Expansin-like A2 OS=Arabidopsis thaliana GN=EXLA2 PE=2 SV=1

 Score =  157 bits (398), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 76/188 (40%), Positives = 117/188 (62%), Gaps = 2/188 (1%)

Query: 61  AGVSRLWKNGTGCGACYQVRCKVPQLCTDYGVYVVVTDYGEGDKTDFILSPRAYGRMALP 120
           A +  ++K+G+GCGAC+QVRCK P LC+  G  V+VTD  + ++TD +LS RA+  MA P
Sbjct: 61  AALPSIYKDGSGCGACFQVRCKNPTLCSSKGTTVIVTDLNKTNQTDLVLSSRAFRAMAKP 120

Query: 121 DKSAE--LYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAV 178
              A+  L   G+V++E+RRVPC Y    +  +V E+S+ P+YLAI +LY  GQ +V+A+
Sbjct: 121 VVGADRDLLKQGIVDIEYRRVPCDYGNKKMNVRVEESSKNPNYLAIKLLYQGGQTEVVAI 180

Query: 179 EIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAGV 238
            I Q     W  M R+ GAV+     P GA+  RF V+       V +   +P++W+AG 
Sbjct: 181 YIAQVGSSHWSYMTRSHGAVWVTDKVPNGALQFRFVVTAGYDGKMVWSQRVLPANWEAGK 240

Query: 239 AYESEIQL 246
           +Y++ +Q+
Sbjct: 241 SYDAGVQI 248

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZT4|EXLA1_ARATH Expansin-like A1 OS=Arabidopsis thaliana GN=EXLA1 PE=2 SV=1

 Score =  154 bits (390), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 75/189 (39%), Positives = 118/189 (62%), Gaps = 3/189 (1%)

Query: 61  AGVSRLWKNGTGCGACYQVRCKVPQLCTDYGVYVVVTDYGEGDKTDFILSPRAYGRMALP 120
           A +  ++K+G GCGAC+QVRCK P+LC+  G  V++TD  + ++TD +LS RA+  MA P
Sbjct: 60  AAIPSIYKDGAGCGACFQVRCKNPKLCSTKGTIVMITDLNKSNQTDLVLSSRAFRAMAKP 119

Query: 121 DKSA--ELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAV 178
              A  +L   G+V++E++RVPC Y   N+  +V E S+ P+YL I +LY  GQ +V+++
Sbjct: 120 IVGADKDLLKQGIVDIEYQRVPCDYGNKNMNVRVEEASKKPNYLEIKLLYQGGQTEVVSI 179

Query: 179 EIWQEDYQ-EWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 237
           +I Q      W  M R+ GAV+     P GAI  RF V+G      + + + +PS+W+AG
Sbjct: 180 DIAQVGSSPNWGYMTRSHGAVWVTDKVPTGAIQFRFVVTGGYDGKMIWSQSVLPSNWEAG 239

Query: 238 VAYESEIQL 246
             Y++ +Q+
Sbjct: 240 KIYDAGVQI 248

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZT5|EXLA3_ARATH Expansin-like A3 OS=Arabidopsis thaliana GN=EXLA3 PE=2 SV=1

 Score =  154 bits (388), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 74/188 (39%), Positives = 113/188 (60%), Gaps = 2/188 (1%)

Query: 61  AGVSRLWKNGTGCGACYQVRCKVPQLCTDYGVYVVVTDYGEGDKTDFILSPRAYGRMALP 120
           A +  ++K+G GCGAC+QVRCK P+LC   G  V+VTD    ++TD +LS RA+  MA P
Sbjct: 60  AAIPSIYKDGAGCGACFQVRCKNPKLCNSKGTIVMVTDLNTSNQTDLVLSSRAFRAMAKP 119

Query: 121 DKSAELY--SYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAV 178
               + Y    G+V+VE++RVPC Y   NL  +V E S+ P+YLAI +LY  GQ +V+ +
Sbjct: 120 VVGVDKYLLKQGIVDVEYQRVPCNYGKRNLNVRVEEASKKPNYLAIKLLYQGGQTEVVGI 179

Query: 179 EIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAGV 238
           +I      +W  M R+ GAV+     P GA+  +F V+G      V +   +P++W +G 
Sbjct: 180 DIAPVGSSQWSYMSRSHGAVWATDKVPTGALQFKFTVTGGYDGKTVWSKRVLPANWNSGR 239

Query: 239 AYESEIQL 246
            Y++ +Q+
Sbjct: 240 IYDAGVQI 247

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XCL0|EXLA2_ORYSJ Expansin-like A2 OS=Oryza sativa subsp. japonica GN=EXLA2 PE=2 SV=1

 Score =  142 bits (359), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/250 (35%), Positives = 129/250 (51%), Gaps = 4/250 (1%)

Query: 1   MGLYQYYLLSVMLLLPALCYSHYTSTYSRATYYGSPDSLGTPTGACGFGEYGRTVNDANV 60
           M      L  V++ + A   S       R+       S+    G+CG+G    + N  ++
Sbjct: 9   MASASVVLFFVVVGMSASMVSGCDRCVRRSKAGFRDSSIALNAGSCGYGSLAASFNGGHL 68

Query: 61  AGVS-RLWKNGTGCGACYQVRCKVPQLCTDYGVYVVVTDYGEG-DKTDFILSPRAYGRMA 118
           A  S  L++ G GCGAC+QVRCK  +LC+  G  VVVTD     ++TD +LS  AY  MA
Sbjct: 69  AAASPALFRGGVGCGACFQVRCKDGKLCSTAGAKVVVTDEARSTNRTDLVLSAAAYAAMA 128

Query: 119 LPDKSAELYSYGVVNVEFRRVPCWYK-GYNLQFKVHENSRYPHYLAIAILYVAGQNDVLA 177
            P  +A+L +   V+VE++RVPC Y  G NL  +V E SR P  L+I  LY  GQ D++A
Sbjct: 129 RPGMAAQLRTRRAVDVEYKRVPCEYAAGRNLSIRVEEKSRPPRELSIRFLYQGGQTDIVA 188

Query: 178 VEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAI-PSDWKA 236
           V++       W  M R +G  +  +  P G +  R  V+G     WV A+  + P  W A
Sbjct: 189 VDVATVGSSNWKFMTRDYGPAWSTAQAPAGPLQFRVVVTGGYDGKWVWADGEVLPRRWTA 248

Query: 237 GVAYESEIQL 246
           G  Y++ +Q+
Sbjct: 249 GRVYDAGVQI 258

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8H274|EXLA3_ORYSJ Expansin-like A3 OS=Oryza sativa subsp. japonica GN=EXLA3 PE=2 SV=1

 Score =  142 bits (357), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 69/187 (36%), Positives = 108/187 (57%), Gaps = 1/187 (0%)

Query: 61  AGVSRLWKNGTGCGACYQVRCKVPQLCTDYGVYVVVTDYGEGDKTDFILSPRAYGRMALP 120
           AG  R  + G GCG C+Q+RC+  ++C++ GV VV+TD+   + TDF+L   A+  +A P
Sbjct: 73  AGGPRQHRGGLGCGRCFQMRCRNAEVCSNAGVRVVLTDFHRSNSTDFLLGGPAFAGLAKP 132

Query: 121 DKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEI 180
             + +L     ++VE+RR+PC YK  NL   V E S+ P+ L I  LY  GQ D+LAV++
Sbjct: 133 GMAHKLKKLDALSVEYRRIPCDYKDKNLSILVEEQSKRPNNLVIKFLYQGGQTDILAVDV 192

Query: 181 WQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAI-PSDWKAGVA 239
            Q    +W  M R +G V+ I   P G +  R  V+G     WV A+  + P++W+ G  
Sbjct: 193 AQVGSSDWRFMTRVYGPVWSIDRAPNGPLQFRAVVTGGYDGKWVWADREVLPANWQPGQV 252

Query: 240 YESEIQL 246
           Y++  ++
Sbjct: 253 YDTGARI 259

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q40638|EXPB1_ORYSJ Expansin-B1 OS=Oryza sativa subsp. japonica GN=EXPB1a PE=1 SV=2

 Score =  140 bits (353), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 127/228 (55%), Gaps = 12/228 (5%)

Query: 28  SRATYYGSPDSLGTPT--GACGFGEYGRT-VNDANVAGVSRLWKNGTGCGACYQVRCKVP 84
           ++AT+YG+P   G     GACG+ +  +      N  G   ++K+G GCG+C++++C  P
Sbjct: 44  AKATWYGAPKGAGPKDNGGACGYKDVDKAPFLGMNSCGNDPIFKDGKGCGSCFEIKCSKP 103

Query: 85  QLCTDYGVYVVVTDYGEGDKT--DFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCW 142
           + C+D    + VTD  +       F LS  A+G MA   K  EL   G+++ +FRRV C 
Sbjct: 104 EACSDKPALIHVTDMNDEPIAAYHFDLSGLAFGAMAKDGKDEELRKAGIIDTQFRRVKCK 163

Query: 143 YKGYNLQFKVH-ENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDI 201
           Y   + +   H E +  P+YLA+ + YVAG  DV+ VEI ++  +EW A++ ++GA++ I
Sbjct: 164 YPA-DTKITFHIEKASNPNYLALLVKYVAGDGDVVEVEIKEKGSEEWKALKESWGAIWRI 222

Query: 202 SSPP--EGAISLRFQVSGSAGLTWVVANNAIPSDWKAGVAYESEIQLK 247
            +P   +G  S+R    G      ++A +AIP  WKA   Y+S +Q K
Sbjct: 223 DTPKPLKGPFSVRVTTEGGEK---IIAEDAIPDGWKADSVYKSNVQAK 267

May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8H7T4|EXB10_ORYSJ Expansin-B10 OS=Oryza sativa subsp. japonica GN=EXPB10 PE=2 SV=1

 Score =  140 bits (353), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 81/227 (35%), Positives = 124/227 (54%), Gaps = 12/227 (5%)

Query: 28  SRATYYGSPDSLGTPT--GACGFGEYGRT-VNDANVAGVSRLWKNGTGCGACYQVRCKVP 84
           +R T+YG P   G     GACG+ +  +      N  G   ++K+G GCG+C++V+C  P
Sbjct: 44  ARGTWYGKPKGAGPDDNGGACGYKDIDKAPFLGMNSCGNDPIFKDGKGCGSCFEVKCSKP 103

Query: 85  QLCTDYGVYVVVTDYGEGDKT--DFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCW 142
           + C+D  V + +TD          F LS  A+G MA   K  EL   G+++++FRRV C 
Sbjct: 104 EACSDKPVIIHITDMNTEPIAAYHFDLSGHAFGAMAKEGKDEELRKAGIIDMQFRRVRCK 163

Query: 143 YKG-YNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDI 201
           Y G   + F V + S  P+Y A+ + YV G  DV+ VE+ ++  +EW  +  ++GA++ I
Sbjct: 164 YPGETKVTFHVEKGSN-PNYFAVLVKYVGGDGDVVKVELKEKGSEEWKPLNESWGAIWRI 222

Query: 202 SSPP--EGAISLRFQVSGSAGLTWVVANNAIPSDWKAGVAYESEIQL 246
            +P   +G  SLR        L   VAN+ IP +WKA   Y+SEIQ+
Sbjct: 223 DTPKPLKGPFSLRVTTESDQKL---VANDVIPDNWKANALYKSEIQV 266

May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	247
255580799	247	Major pollen allergen Ory s 1 precursor,	0.991	0.991	0.716	1e-100
224126451	236	hypothetical protein POPTRDRAFT_783792 [	0.947	0.991	0.754	1e-100
224138720	251	hypothetical protein POPTRDRAFT_589918 [	0.979	0.964	0.714	2e-96
255580801	248	Major pollen allergen Ory s 1 precursor,	0.975	0.971	0.683	7e-94
356563391	251	PREDICTED: expansin-like B1-like [Glycin	0.987	0.972	0.669	4e-92
356497093	251	PREDICTED: expansin-like B1-like [Glycin	0.983	0.968	0.676	8e-92
225466785	251	PREDICTED: expansin-like B1 [Vitis vinif	0.967	0.952	0.656	3e-90
356540563	251	PREDICTED: expansin-like B1-like [Glycin	0.983	0.968	0.668	3e-89
388493184	252	unknown [Medicago truncatula]	0.983	0.964	0.635	4e-89
357482205	251	Expansin-like protein [Medicago truncatu	0.983	0.968	0.635	4e-89

>gi|255580799|ref|XP_002531220.1| Major pollen allergen Ory s 1 precursor, putative [Ricinus communis] gi|223529180|gb|EEF31156.1| Major pollen allergen Ory s 1 precursor, putative [Ricinus communis]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/247 (71%), Positives = 211/247 (85%), Gaps = 2/247 (0%)

Query: 1   MGL-YQYYLLSVMLLLPALCYSHYTSTYSRATYYGSPDSLGTPTGACGFGEYGRTVNDAN 59
           MGL Y Y +  +++LLPA+ YS    T SRATYYGSPD LGTPTGACGFGEYGRTVNDAN
Sbjct: 1   MGLIYGYCMFCLVVLLPAIAYSQ-DFTGSRATYYGSPDCLGTPTGACGFGEYGRTVNDAN 59

Query: 60  VAGVSRLWKNGTGCGACYQVRCKVPQLCTDYGVYVVVTDYGEGDKTDFILSPRAYGRMAL 119
           VAGVSRL+KNGTGCG CYQVRCK PQ+C+D GV VVVTDYGEGDKTDFILS RAY R+A 
Sbjct: 60  VAGVSRLYKNGTGCGGCYQVRCKAPQICSDDGVNVVVTDYGEGDKTDFILSSRAYARLAR 119

Query: 120 PDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVE 179
           P+ +AEL++YGVV++E+RR+ C Y GYN+ FKVHE+SR+P YLAI +LY  GQND+LAV+
Sbjct: 120 PNMAAELFAYGVVDIEYRRISCRYAGYNVMFKVHEHSRFPEYLAIVVLYQGGQNDILAVQ 179

Query: 180 IWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAGVA 239
           IWQED +EW+ MR+A+GAV+D+ +PP+G I+LRFQVSGSAGLTWV A NAIPS+WK GVA
Sbjct: 180 IWQEDCKEWIGMRKAYGAVWDMPNPPKGYITLRFQVSGSAGLTWVQAKNAIPSEWKVGVA 239

Query: 240 YESEIQL 246
           Y+S IQL
Sbjct: 240 YDSAIQL 246

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126451|ref|XP_002329557.1| hypothetical protein POPTRDRAFT_783792 [Populus trichocarpa] gi|222870266|gb|EEF07397.1| hypothetical protein POPTRDRAFT_783792 [Populus trichocarpa]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 178/236 (75%), Positives = 203/236 (86%), Gaps = 2/236 (0%)

Query: 12  MLLLPALCYSHYTSTYSRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVSRLWKNGT 71
           M LLPA+ YS    T+SRATYYGSPD LGTP+GACGFGEYGRTVNDANVAGVSRL+KNGT
Sbjct: 1   MALLPAISYSQ-DYTFSRATYYGSPDCLGTPSGACGFGEYGRTVNDANVAGVSRLYKNGT 59

Query: 72  GCGACYQVRCKVPQLCTDYGVYVVVTDYGEGDKTDFILSPRAYGRMALPDKSAELYSYGV 131
           GCG CYQVRCK P LCTD GV VVVTDYGEGDKTDFILSPRAY RMA P+ + EL +YGV
Sbjct: 60  GCGGCYQVRCKAPNLCTDDGVNVVVTDYGEGDKTDFILSPRAYARMAHPNMAVELIAYGV 119

Query: 132 VNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAM 191
           V+VEFRR+PC Y GYNL FKVHE+SR+P YLAI +LY AGQN++LAVE+WQED +EW  M
Sbjct: 120 VDVEFRRIPCRYSGYNLMFKVHEHSRFPDYLAIILLYQAGQNEILAVELWQEDCKEWRGM 179

Query: 192 RRAFGAVFDISSPPEGAISLRFQVSGSAGLT-WVVANNAIPSDWKAGVAYESEIQL 246
           RRA+GAV+D+ +PP+GAISLRFQVSGSAG+T W  A N IPSDWKAG+AY+S +QL
Sbjct: 180 RRAYGAVWDMPNPPKGAISLRFQVSGSAGVTYWAQAANVIPSDWKAGIAYDSTVQL 235

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138720|ref|XP_002326673.1| hypothetical protein POPTRDRAFT_589918 [Populus trichocarpa] gi|222833995|gb|EEE72472.1| hypothetical protein POPTRDRAFT_589918 [Populus trichocarpa]

 Score =  358 bits (918), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 175/245 (71%), Positives = 204/245 (83%), Gaps = 3/245 (1%)

Query: 4   YQYYLLSVML--LLPALCYSHYTSTYSRATYYGSPDSLGTPTGACGFGEYGRTVNDANVA 61
           Y Y +L V+   LLPA+ +S    T SRATY+GSPD LGTPTGACGFG YGRTVNDANVA
Sbjct: 7   YGYSILCVVAVALLPAISHSQ-DYTCSRATYFGSPDCLGTPTGACGFGGYGRTVNDANVA 65

Query: 62  GVSRLWKNGTGCGACYQVRCKVPQLCTDYGVYVVVTDYGEGDKTDFILSPRAYGRMALPD 121
           GVSRL+KNGTGCG CYQVRCK   LC+D GV VVVTDYGEGDKTDFILS RAY RMA P+
Sbjct: 66  GVSRLFKNGTGCGGCYQVRCKASNLCSDDGVNVVVTDYGEGDKTDFILSTRAYARMARPN 125

Query: 122 KSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIW 181
            + EL++YGVV+VEFRR+PC Y GYNL FKVHE+SR+P YLAI +LY AGQN++LAVE+ 
Sbjct: 126 MALELFAYGVVDVEFRRIPCRYNGYNLMFKVHEHSRFPEYLAIVLLYQAGQNEILAVELR 185

Query: 182 QEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAGVAYE 241
           QED +EW  MRRA+GAV+DI +PP+GAISL+ QV GSAG+TWV A+N +PSDWKAGVAY+
Sbjct: 186 QEDCKEWRGMRRAYGAVWDIPNPPKGAISLKLQVCGSAGVTWVQADNVLPSDWKAGVAYD 245

Query: 242 SEIQL 246
           S IQL
Sbjct: 246 SAIQL 250

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580801|ref|XP_002531221.1| Major pollen allergen Ory s 1 precursor, putative [Ricinus communis] gi|223529181|gb|EEF31157.1| Major pollen allergen Ory s 1 precursor, putative [Ricinus communis]

 Score =  349 bits (895), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 166/243 (68%), Positives = 200/243 (82%), Gaps = 2/243 (0%)

Query: 4   YQYYLLSVMLLLPALCYSHYTSTYSRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGV 63
           Y Y +  +M+LLP + YS    T SRATYYGSPD LGTPTGACGFGEYGRTVN+ANVAGV
Sbjct: 7   YGYCMFCLMVLLPPITYSQ-DFTSSRATYYGSPDRLGTPTGACGFGEYGRTVNNANVAGV 65

Query: 64  SRLWKNGTGCGACYQVRCKVPQ-LCTDYGVYVVVTDYGEGDKTDFILSPRAYGRMALPDK 122
           SRL++NGTGCG CYQVRCK P  +C D GV VVVTDYGEGDKTDFILS RAY R+A P+ 
Sbjct: 66  SRLYRNGTGCGGCYQVRCKAPHGICNDDGVNVVVTDYGEGDKTDFILSSRAYARLARPNM 125

Query: 123 SAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQ 182
           +AEL++YGVV+V++RR+ C Y GYNL FK+HE SR+P YLAI +LY  GQND+LAV+IWQ
Sbjct: 126 AAELFAYGVVDVQYRRISCRYAGYNLIFKIHEYSRFPEYLAIVVLYQGGQNDILAVQIWQ 185

Query: 183 EDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAGVAYES 242
           ED +EW+ MR+A+GAV+D+ +PP+G I+LRFQVSGSAGLTWV A NAIP +WK GVAY  
Sbjct: 186 EDCKEWIGMRKAYGAVWDMPNPPKGYITLRFQVSGSAGLTWVQAKNAIPREWKVGVAYNI 245

Query: 243 EIQ 245
           ++ 
Sbjct: 246 QLN 248

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563391|ref|XP_003549947.1| PREDICTED: expansin-like B1-like [Glycine max]

 Score =  343 bits (879), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 164/245 (66%), Positives = 192/245 (78%), Gaps = 1/245 (0%)

Query: 4   YQYYLLSVMLLLPALCYSHYTSTYSRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGV 63
           +Q  L  V+LLLPALC S  + T SRATYYGSPD  G P GACGFGEYGRTVND +VAGV
Sbjct: 7   HQLGLACVVLLLPALCSSQDSFTDSRATYYGSPDCYGNPRGACGFGEYGRTVNDGSVAGV 66

Query: 64  SRLWKNGTGCGACYQVRCKVPQLCTDYGVYVVVTDYGEGDKTDFILSPRAYGRMAL-PDK 122
           SRLW+NG+GCGACYQ RCK+PQ C + G YVVVTDYGEGD+TDFI+SPRAY R+    D 
Sbjct: 67  SRLWRNGSGCGACYQARCKIPQYCDENGAYVVVTDYGEGDRTDFIMSPRAYSRLGRNADA 126

Query: 123 SAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQ 182
           SAEL+ YGVV++E+RRVPC Y GYN+ FKVHE+SR P Y A+ +LYV G  DV AVE++Q
Sbjct: 127 SAELFKYGVVDIEYRRVPCSYTGYNVVFKVHEHSRNPDYFAVVVLYVDGTYDVTAVELFQ 186

Query: 183 EDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAGVAYES 242
           +D QEW  MRRAFGA+FD S+PP G I LRFQVSGSAGL WV + NAI  DWKAG  Y++
Sbjct: 187 QDCQEWKPMRRAFGAMFDYSNPPNGEIYLRFQVSGSAGLYWVQSKNAISGDWKAGATYDT 246

Query: 243 EIQLK 247
            +QL 
Sbjct: 247 NVQLN 251

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497093|ref|XP_003517398.1| PREDICTED: expansin-like B1-like [Glycine max]

 Score =  342 bits (877), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 165/244 (67%), Positives = 188/244 (77%), Gaps = 1/244 (0%)

Query: 4   YQYYLLSVMLLLPALCYSHYTSTYSRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGV 63
           YQ  L  V LLLPALC S  + T SRATYYGSPD  G P GACGFGEYG+TVND +VAGV
Sbjct: 7   YQLSLFCVTLLLPALCTSQDSFTCSRATYYGSPDCYGNPRGACGFGEYGKTVNDGSVAGV 66

Query: 64  SRLWKNGTGCGACYQVRCKVPQLCTDYGVYVVVTDYGEGDKTDFILSPRAYGRMAL-PDK 122
           S LWKNG+GCGACYQVRCK+PQ C + G YVVVTDYGEGD+TDFI+SPRAY R+    D 
Sbjct: 67  SWLWKNGSGCGACYQVRCKIPQFCDENGAYVVVTDYGEGDRTDFIMSPRAYSRLGRNADA 126

Query: 123 SAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQ 182
           SAEL+ YGV++VE+RRVPC Y GYNL  KVHE+SR PHYLAI ILY+ G  DV AVE+WQ
Sbjct: 127 SAELFKYGVMDVEYRRVPCRYGGYNLLVKVHEHSRNPHYLAIVILYLGGTYDVTAVELWQ 186

Query: 183 EDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAGVAYES 242
           ED QEW  MRRAFG VFD  +PP G I LRFQ+SG+A   WV + N I SDW+ G  ++S
Sbjct: 187 EDCQEWRRMRRAFGTVFDAENPPRGDIKLRFQLSGNAEKYWVQSENVISSDWEGGAVFDS 246

Query: 243 EIQL 246
           EIQL
Sbjct: 247 EIQL 250

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225466785|ref|XP_002273896.1| PREDICTED: expansin-like B1 [Vitis vinifera] gi|296088951|emb|CBI38517.3| unnamed protein product [Vitis vinifera]

 Score =  337 bits (863), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 157/239 (65%), Positives = 190/239 (79%)

Query: 8   LLSVMLLLPALCYSHYTSTYSRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVSRLW 67
            L  ++LLP LC    T TYSRATYYGSPD LGTPTGACGFGEYGR+VN  NV  VSRL+
Sbjct: 11  FLCFIVLLPLLCKCEDTFTYSRATYYGSPDCLGTPTGACGFGEYGRSVNGGNVGAVSRLY 70

Query: 68  KNGTGCGACYQVRCKVPQLCTDYGVYVVVTDYGEGDKTDFILSPRAYGRMALPDKSAELY 127
           +NGTGCGACYQVRCKVP LC D G+ VVVTD+GEGD TDFILSPR +  +A P+ +A+L+
Sbjct: 71  RNGTGCGACYQVRCKVPNLCADNGMKVVVTDHGEGDYTDFILSPRGFSMLARPNMAADLF 130

Query: 128 SYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQE 187
           +YGVV +E+RRVPC Y G N+ FKVHE+SR+P YLAI +LY AG +D+ AV+IWQED QE
Sbjct: 131 AYGVVGIEYRRVPCQYPGSNIFFKVHEHSRFPDYLAIVMLYQAGLSDITAVDIWQEDCQE 190

Query: 188 WVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAGVAYESEIQL 246
           W  MR+++GAV+D+++PP+G + LRFQVSG  G  WV   N IPSDWKAGVAY+S  QL
Sbjct: 191 WKGMRKSYGAVWDMANPPKGPVGLRFQVSGRGGQKWVQLMNVIPSDWKAGVAYDSAFQL 249

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540563|ref|XP_003538757.1| PREDICTED: expansin-like B1-like [Glycine max]

 Score =  333 bits (855), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 163/244 (66%), Positives = 186/244 (76%), Gaps = 1/244 (0%)

Query: 4   YQYYLLSVMLLLPALCYSHYTSTYSRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGV 63
           YQ  ++ V LLLPAL  S  + T SRATYYGS D  G P GACGFGEYG+TVND +VAGV
Sbjct: 7   YQLSIICVTLLLPALRTSQDSFTCSRATYYGSTDCYGNPRGACGFGEYGKTVNDGSVAGV 66

Query: 64  SRLWKNGTGCGACYQVRCKVPQLCTDYGVYVVVTDYGEGDKTDFILSPRAYGRM-ALPDK 122
           S LWKNG+GCGACYQVRCK+PQ C + G YVVVTDYGEGD+TDFI+SPRAY R+ +  D 
Sbjct: 67  SWLWKNGSGCGACYQVRCKIPQFCDENGAYVVVTDYGEGDRTDFIMSPRAYSRLGSNADA 126

Query: 123 SAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQ 182
           SAEL+ YGVV+VE+RRVPC Y GYNL  KVHE SR PHYLAI ILY+ G  DV AVE+WQ
Sbjct: 127 SAELFKYGVVDVEYRRVPCRYGGYNLLVKVHEQSRNPHYLAIVILYLGGTYDVTAVELWQ 186

Query: 183 EDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAGVAYES 242
           ED QEW  MRRAFG VFD  +PP G I LRFQ+ G A   WV + N I  +W+AGV Y+S
Sbjct: 187 EDCQEWRRMRRAFGTVFDAENPPRGDIKLRFQLGGDAQQYWVQSKNVISGNWEAGVVYDS 246

Query: 243 EIQL 246
           EIQL
Sbjct: 247 EIQL 250

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493184|gb|AFK34658.1| unknown [Medicago truncatula]

 Score =  333 bits (854), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 155/244 (63%), Positives = 186/244 (76%), Gaps = 1/244 (0%)

Query: 4   YQYYLLSVMLLLPALCYSHYTSTYSRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGV 63
           +Q   + VML LP LC S  +   SRATYYGSPD    P GACG+G+YG+TVND NVAGV
Sbjct: 8   HQIGFICVMLFLPVLCSSQDSFVCSRATYYGSPDCYANPKGACGYGDYGQTVNDGNVAGV 67

Query: 64  SRLWKNGTGCGACYQVRCKVPQLCTDYGVYVVVTDYGEGDKTDFILSPRAYGRMALP-DK 122
           S LWKNG+GCGACYQVRCK+P+LC + G YVVVTD+G GD+TDFI+SPR Y ++    D 
Sbjct: 68  SWLWKNGSGCGACYQVRCKIPELCDENGAYVVVTDFGVGDRTDFIMSPRGYSKLGKNGDA 127

Query: 123 SAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQ 182
           SAEL+ YGVV++E++R+PC Y GYN+ FKVHE S+ PHYLAI ILYV G NDV AV++WQ
Sbjct: 128 SAELFKYGVVDIEYKRIPCKYNGYNILFKVHERSKNPHYLAILILYVGGTNDVTAVQLWQ 187

Query: 183 EDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAGVAYES 242
           ED +EW  MRRAFG VFD  +PP G I LR QVSGSAGL WV + N I SDW+AG  Y+S
Sbjct: 188 EDCKEWRPMRRAFGTVFDAENPPRGEIKLRLQVSGSAGLYWVESKNVISSDWEAGSVYDS 247

Query: 243 EIQL 246
           +IQ 
Sbjct: 248 QIQF 251

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482205|ref|XP_003611388.1| Expansin-like protein [Medicago truncatula] gi|355512723|gb|AES94346.1| Expansin-like protein [Medicago truncatula]

 Score =  333 bits (854), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 155/244 (63%), Positives = 186/244 (76%), Gaps = 1/244 (0%)

Query: 4   YQYYLLSVMLLLPALCYSHYTSTYSRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGV 63
           +Q   + VML LP LC S  +   SRATYYGSPD    P GACG+G+YG+TVND NVAGV
Sbjct: 7   HQIGFICVMLFLPVLCSSQDSFVCSRATYYGSPDCYANPKGACGYGDYGQTVNDGNVAGV 66

Query: 64  SRLWKNGTGCGACYQVRCKVPQLCTDYGVYVVVTDYGEGDKTDFILSPRAYGRMALP-DK 122
           S LWKNG+GCGACYQVRCK+P+LC + G YVVVTD+G GD+TDFI+SPR Y ++    D 
Sbjct: 67  SWLWKNGSGCGACYQVRCKIPELCDENGAYVVVTDFGVGDRTDFIMSPRGYSKLGKNGDA 126

Query: 123 SAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQ 182
           SAEL+ YGVV++E++R+PC Y GYN+ FKVHE S+ PHYLAI ILYV G NDV AV++WQ
Sbjct: 127 SAELFKYGVVDIEYKRIPCKYNGYNILFKVHERSKNPHYLAILILYVGGTNDVTAVQLWQ 186

Query: 183 EDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAGVAYES 242
           ED +EW  MRRAFG VFD  +PP G I LR QVSGSAGL WV + N I SDW+AG  Y+S
Sbjct: 187 EDCKEWRPMRRAFGTVFDAENPPRGEIKLRLQVSGSAGLYWVESKNVISSDWEAGSVYDS 246

Query: 243 EIQL 246
           +IQ 
Sbjct: 247 QIQF 250

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	247
TAIR|locus:2130444	250	EXLB1 "expansin-like B1" [Arab	0.959	0.948	0.577	4.5e-75
TAIR|locus:2121803	265	EXLA2 "expansin-like A2" [Arab	0.963	0.898	0.352	2.4e-37
TAIR|locus:2077177	265	EXLA1 "expansin-like A1" [Arab	0.987	0.920	0.332	1.7e-36
TAIR|locus:2077167	263	EXLA3 "expansin-like A3" [Arab	0.878	0.825	0.351	7.2e-36
TAIR|locus:2018521	273	EXPB2 "expansin B2" [Arabidops	0.858	0.776	0.327	1.3e-27
TAIR|locus:2123643	264	EXPB3 "expansin B3" [Arabidops	0.858	0.803	0.330	9.4e-27
TAIR|locus:2051338	271	EXPB1 "expansin B1" [Arabidops	0.963	0.878	0.307	6.6e-26
TAIR|locus:2061918	253	EXPA8 "expansin A8" [Arabidops	0.829	0.810	0.342	3.4e-22
TAIR|locus:2055594	259	EXPB4 "expansin B4" [Arabidops	0.842	0.803	0.312	5.5e-22
TAIR|locus:2161028	255	EXPA14 "expansin A14" [Arabido	0.906	0.878	0.307	1.1e-21

TAIR|locus:2130444 EXLB1 "expansin-like B1" [Arabidopsis thaliana (taxid:3702)]

 Score = 757 (271.5 bits), Expect = 4.5e-75, P = 4.5e-75
 Identities = 138/239 (57%), Positives = 168/239 (70%)

Query:     9 LSVMLLLPALCYSHYTSTYSRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVS-RLW 67
             + V++LLP LC S      SRATYYGSPD    P G CG+GE+GR +N+  V+GVS RLW
Sbjct:    12 VQVIVLLPLLCLSD-DFVNSRATYYGSPDCKANPRGHCGYGEFGRDINNGEVSGVSWRLW 70

Query:    68 KNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXKTDFILSPRAYGRMALPDKSAELY 127
              NGTGCGACYQVRCK+P  C                 TDFILSP+AYGRMA P    +LY
Sbjct:    71 NNGTGCGACYQVRCKIPPHCSEEGVYVVATDSGEGDGTDFILSPKAYGRMARPGTENQLY 130

Query:   128 SYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQE 187
             S+GVVNVE++R+PC Y GYNL +K+HE S  PHYLAI +LYV G ND+LAVE+WQED +E
Sbjct:   131 SFGVVNVEYQRIPCRYAGYNLVYKIHEKSYNPHYLAILVLYVGGVNDILAVEVWQEDCKE 190

Query:   188 WVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAGVAYESEIQL 246
             W  MRR FGAV D+ +PP G ++LRF V GSAG+ W+ + NAIP+DW AG  Y+S I L
Sbjct:   191 WRRMRRVFGAVHDLQNPPRGTLTLRFLVYGSAGINWIQSPNAIPADWTAGATYDSNILL 249

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009826 "unidimensional cell growth" evidence=ISS

GO:0009828 "plant-type cell wall loosening" evidence=ISS

GO:0019953 "sexual reproduction" evidence=IEA

TAIR|locus:2121803 EXLA2 "expansin-like A2" [Arabidopsis thaliana (taxid:3702)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 86/244 (35%), Positives = 135/244 (55%)

Query:     7 YLLSVMLLLPALCYSHYTSTYS-RATYYGSPDSLGTPTGACGFGEYGRTVNDANVAG-VS 64
             +LLSV+LL  +   +     +S +A Y+ S  +L +  GAC +G         ++A  + 
Sbjct:     7 FLLSVVLLFSSSAAACDRCLHSSKAAYFSSASALSS--GACAYGSMATGFFAGHIAAALP 64

Query:    65 RLWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXKTDFILSPRAYGRMALPDKSA 124
              ++K+G+GCGAC+QVRCK P LC                +TD +LS RA+  MA P   A
Sbjct:    65 SIYKDGSGCGACFQVRCKNPTLCSSKGTTVIVTDLNKTNQTDLVLSSRAFRAMAKPVVGA 124

Query:   125 E--LYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQ 182
             +  L   G+V++E+RRVPC Y    +  +V E+S+ P+YLAI +LY  GQ +V+A+ I Q
Sbjct:   125 DRDLLKQGIVDIEYRRVPCDYGNKKMNVRVEESSKNPNYLAIKLLYQGGQTEVVAIYIAQ 184

Query:   183 EDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAGVAYES 242
                  W  M R+ GAV+     P GA+  RF V+       V +   +P++W+AG +Y++
Sbjct:   185 VGSSHWSYMTRSHGAVWVTDKVPNGALQFRFVVTAGYDGKMVWSQRVLPANWEAGKSYDA 244

Query:   243 EIQL 246
              +Q+
Sbjct:   245 GVQI 248

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009664 "plant-type cell wall organization" evidence=ISS

GO:0019953 "sexual reproduction" evidence=IEA

GO:0009826 "unidimensional cell growth" evidence=NAS

GO:0009828 "plant-type cell wall loosening" evidence=NAS

TAIR|locus:2077177 EXLA1 "expansin-like A1" [Arabidopsis thaliana (taxid:3702)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 83/250 (33%), Positives = 136/250 (54%)

Query:     1 MGLYQYYLLSVMLLLPALCYSHYTSTYSRATYYGSPDSLGTPTGACGFGEYGRTVNDANV 60
             MG + + ++ + L   ++         S+A Y+ S  +L +  GAC +G    +    ++
Sbjct:     1 MGSFLFLIVVIFLFSSSVNACDRCLHRSKAAYFSSASALSS--GACAYGSMATSFFAGHI 58

Query:    61 AG-VSRLWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXKTDFILSPRAYGRMAL 119
             A  +  ++K+G GCGAC+QVRCK P+LC                +TD +LS RA+  MA 
Sbjct:    59 AAAIPSIYKDGAGCGACFQVRCKNPKLCSTKGTIVMITDLNKSNQTDLVLSSRAFRAMAK 118

Query:   120 PDKSAE--LYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLA 177
             P   A+  L   G+V++E++RVPC Y   N+  +V E S+ P+YL I +LY  GQ +V++
Sbjct:   119 PIVGADKDLLKQGIVDIEYQRVPCDYGNKNMNVRVEEASKKPNYLEIKLLYQGGQTEVVS 178

Query:   178 VEIWQEDYQ-EWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKA 236
             ++I Q      W  M R+ GAV+     P GAI  RF V+G      + + + +PS+W+A
Sbjct:   179 IDIAQVGSSPNWGYMTRSHGAVWVTDKVPTGAIQFRFVVTGGYDGKMIWSQSVLPSNWEA 238

Query:   237 GVAYESEIQL 246
             G  Y++ +Q+
Sbjct:   239 GKIYDAGVQI 248

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009826 "unidimensional cell growth" evidence=NAS

GO:0009828 "plant-type cell wall loosening" evidence=NAS

GO:0005618 "cell wall" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2077167 EXLA3 "expansin-like A3" [Arabidopsis thaliana (taxid:3702)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 78/222 (35%), Positives = 124/222 (55%)

Query:    28 SRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAG-VSRLWKNGTGCGACYQVRCKVPQL 86
             S+A+Y+ S  +L +  GAC +G    +    ++A  +  ++K+G GCGAC+QVRCK P+L
Sbjct:    28 SKASYFSSASALSS--GACAYGPMATSFFAGHIAAAIPSIYKDGAGCGACFQVRCKNPKL 85

Query:    87 CXXXXXXXXXXXXXXXXKTDFILSPRAYGRMALPDKSAELY--SYGVVNVEFRRVPCWYK 144
             C                +TD +LS RA+  MA P    + Y    G+V+VE++RVPC Y 
Sbjct:    86 CNSKGTIVMVTDLNTSNQTDLVLSSRAFRAMAKPVVGVDKYLLKQGIVDVEYQRVPCNYG 145

Query:   145 GYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSP 204
               NL  +V E S+ P+YLAI +LY  GQ +V+ ++I      +W  M R+ GAV+     
Sbjct:   146 KRNLNVRVEEASKKPNYLAIKLLYQGGQTEVVGIDIAPVGSSQWSYMSRSHGAVWATDKV 205

Query:   205 PEGAISLRFQVSGSAGLTWVVANNAIPSDWKAGVAYESEIQL 246
             P GA+  +F V+G      V +   +P++W +G  Y++ +Q+
Sbjct:   206 PTGALQFKFTVTGGYDGKTVWSKRVLPANWNSGRIYDAGVQI 247

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009664 "plant-type cell wall organization" evidence=ISS

GO:0009826 "unidimensional cell growth" evidence=NAS

GO:0009828 "plant-type cell wall loosening" evidence=NAS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2018521 EXPB2 "expansin B2" [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 73/223 (32%), Positives = 120/223 (53%)

Query:    30 ATYYGSPDSLGTPTGACGFGEYGRTVNDANV--AGVSRLWKNGTGCGACYQVRCKVPQLC 87
             +T+YG+P   G+  GACG+G        + +  AG   L+K+G GCGACYQV+C     C
Sbjct:    52 STWYGNPTGYGSDGGACGYGNAVAQPPFSKMVSAGGPSLFKSGKGCGACYQVKCTSKSAC 111

Query:    88 XXXXXXXXXXXXX---XXXKTDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYK 144
                                   F LS  A+G MA+  + ++L + G + + +++V C Y 
Sbjct:   112 SKNPVTVVITDECPGCVKESVHFDLSGTAFGAMAISGQDSQLRNVGELQILYKKVECNYI 171

Query:   145 GYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQE-DYQEWVAMRRAFGAVF--DI 201
             G  + F+V + S    + A+ + YV G  ++  +E+ Q  D  +W++M +++GAV+  D+
Sbjct:   172 GKTVTFQVDKGSNANSF-AVLVAYVNGDGEIGRIELKQALDSDKWLSMSQSWGAVWKLDV 230

Query:   202 SSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAGVAYESEI 244
             SSP    +SLR   S  +G T VVA+N IP++W+ G  Y+S +
Sbjct:   231 SSPLRAPLSLRV-TSLESGKT-VVASNVIPANWQPGAIYKSNV 271

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009826 "unidimensional cell growth" evidence=ISS;NAS

GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS

GO:0009831 "plant-type cell wall modification involved in multidimensional cell growth" evidence=ISS

GO:0019953 "sexual reproduction" evidence=IEA

TAIR|locus:2123643 EXPB3 "expansin B3" [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 73/221 (33%), Positives = 114/221 (51%)

Query:    30 ATYYGSPDSLGTPTGACGFGEYGRTVN-DANVAGVSR-LWKNGTGCGACYQVRCKVPQLC 87
             AT+YGSP+  G+  GACG+G         A V  V+  L+KNG GCGACY+VRC    +C
Sbjct:    41 ATWYGSPNGDGSDGGACGYGTLVDVKPLHARVGAVNPILFKNGEGCGACYKVRCLDKSIC 100

Query:    88 XXXXXXXXXXXXX---XXXKTDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYK 144
                                 T F LS   +GR+A+  +S  L + G++ V +RR  C Y+
Sbjct:   101 SRRAVTVIITDECPGCSKTSTHFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYR 160

Query:   145 GYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDI-SS 203
             G N+ F V+E S    +L++ + +  G+ D+ ++ I Q   +EW+ M+  +GA + I   
Sbjct:   161 GKNIAFHVNEGST-DFWLSLLVEFEDGEGDIGSMHIRQAGAREWLEMKHVWGANWCIIGG 219

Query:   204 PPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAGVAYESEI 244
             P +G  S++     SAG T + A + +P +W     Y S +
Sbjct:   220 PLKGPFSIKLTTL-SAGKT-LSATDVVPRNWAPKATYSSRL 258

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009664 "plant-type cell wall organization" evidence=ISS

GO:0009826 "unidimensional cell growth" evidence=ISS;NAS

GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS

GO:0019953 "sexual reproduction" evidence=IEA

GO:0006949 "syncytium formation" evidence=IEP

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2051338 EXPB1 "expansin B1" [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 79/257 (30%), Positives = 128/257 (49%)

Query:     3 LYQYYLLSVMLLLPALCYSHYTSTYSR-----ATYYGSPDSLGTPTGACGFGEYGRTVN- 56
             ++ + L+S     P L +S+     +R     AT+YGS +  G+  GACG+G        
Sbjct:    13 VFLHLLISGSGSTPPLTHSNQQVAATRWLPATATWYGSAEGDGSSGGACGYGSLVDVKPF 72

Query:    57 DANVAGVSR-LWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXX------XXXXXKTDFIL 109
              A V  VS  L+K G GCGACY+VRC    +C                       T F L
Sbjct:    73 KARVGAVSPILFKGGEGCGACYKVRCLDKTICSKRAVTIIATDQSPSGPSAKAKHTHFDL 132

Query:   110 SPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYV 169
             S  A+G MA+P  +  + + G++N+ +RR  C Y+G N+ F V+  S   ++L++ I Y 
Sbjct:   133 SGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGST-DYWLSLLIEYE 191

Query:   170 AGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDI-SSPPEGAISLRFQ-VSGSAGLTWVVAN 227
              G+ D+ ++ I Q   +EW++M+  +GA + I   P +G  S++   +S +  L+   A 
Sbjct:   192 DGEGDIGSMHIRQAGSKEWISMKHIWGANWCIVEGPLKGPFSVKLTTLSNNKTLS---AT 248

Query:   228 NAIPSDWKAGVAYESEI 244
             + IPS+W     Y S +
Sbjct:   249 DVIPSNWVPKATYTSRL 265

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009664 "plant-type cell wall organization" evidence=ISS

GO:0009826 "unidimensional cell growth" evidence=ISS;NAS

GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS

GO:0019953 "sexual reproduction" evidence=IEA

TAIR|locus:2061918 EXPA8 "expansin A8" [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 76/222 (34%), Positives = 108/222 (48%)

Query:    30 ATYYGSPDSLGTPTGACGFGE-YGRTVNDANVAGVSR-LWKNGTGCGACYQVRCKV-PQL 86
             AT+YG  D+ GT  GACG+G  YG+     N A +S  L+ NG  CGACY+++C   P+ 
Sbjct:    35 ATFYGGEDASGTMGGACGYGNLYGQGYG-TNTAALSTALFNNGLTCGACYEMKCNDDPRW 93

Query:    87 CXXXXXXXXXXXX---XXXXKTD---FILSPRAYGRMALPD-KSAELYSYGVVNVEFRRV 139
             C                     D   +   P  +  +A P       Y  G+V V FRRV
Sbjct:    94 CLGSTITVTATNFCPPNPGLSNDNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFRRV 153

Query:   140 PCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVF 199
             PC  KG  ++F ++ +S   ++  + I  V G  DV AV I     Q W AM R +G  +
Sbjct:   154 PCMKKG-GIRFTINGHS---YFNLVLISNVGGAGDVHAVSIKGSKTQSWQAMSRNWGQNW 209

Query:   200 DISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAGVAYE 241
               +S      SL FQV+ S G T +V+N+  PS+W+ G  Y+
Sbjct:   210 QSNSYMNDQ-SLSFQVTTSDGRT-LVSNDVAPSNWQFGQTYQ 249

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009664 "plant-type cell wall organization" evidence=IEA

GO:0009826 "unidimensional cell growth" evidence=ISS;NAS

GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS

GO:0009831 "plant-type cell wall modification involved in multidimensional cell growth" evidence=ISS

GO:0006949 "syncytium formation" evidence=IEP

TAIR|locus:2055594 EXPB4 "expansin B4" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 69/221 (31%), Positives = 105/221 (47%)

Query:    31 TYYGSPDSLGTPTGACGFGE-YGRTVNDANV-AGVSRLWKNGTGCGACYQVRCKVPQLCX 88
             T+YG P   G+  GACG+G         A V AG   L+ NG GCG CYQV C     C 
Sbjct:    39 TWYGEPFGAGSTGGACGYGSAVANPPLYAMVSAGGPSLFNNGKGCGTCYQVVCIGHPACS 98

Query:    89 XXXXXXXXXXXX-----XXXKTDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWY 143
                                      LS +A G +A P ++ +L S GV+ V ++R  C Y
Sbjct:    99 GSPITVTITDECPGGPCASEPVHIDLSGKAMGALAKPGQADQLRSAGVIRVNYKRAACLY 158

Query:   144 KGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISS 203
             +G N+ F++   +  P+Y++  + Y  G  D+  VEI Q     +++M+    AV+ ++S
Sbjct:   159 RGTNIVFRMDAGAN-PYYISFVVEYENGDGDLSNVEI-QPAGGSFISMQEMRSAVWKVNS 216

Query:   204 PP--EGAISLRFQVSGSAGLTWVVANNAIPSDWKAGVAYES 242
                  G  ++R   SG +    +VA N IP++WK   +Y S
Sbjct:   217 GSALRGPFNIRL-TSGESHKV-IVAYNVIPANWKPDESYRS 255

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009826 "unidimensional cell growth" evidence=ISS;NAS

GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS

GO:0009831 "plant-type cell wall modification involved in multidimensional cell growth" evidence=ISS

GO:0019953 "sexual reproduction" evidence=IEA

TAIR|locus:2161028 EXPA14 "expansin A14" [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 75/244 (30%), Positives = 122/244 (50%)

Query:     9 LSVMLLLPALCYSHYTSTY--SRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVSR- 65
             LS+M+++       Y+S +  +RAT+YG  D+ GT  GACG+G         N A +S  
Sbjct:    11 LSLMMMIMWKSVDGYSSGWVNARATFYGGADASGTMGGACGYGNLYSQGYGTNTAALSTA 70

Query:    66 LWKNGTGCGACYQVRC-KVPQLCXXXXXXXXXXX------XXXXXKTDFILSPRAYGRMA 118
             L+  G  CGAC+Q++C   P+ C                         +   P+ +  +A
Sbjct:    71 LFNGGQSCGACFQIKCVDDPKWCIGGTITVTGTNFCPPNFAQANNAGGWCNPPQHHFDLA 130

Query:   119 LPD--KSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVL 176
              P   + A+ Y  GVV V++RRV C  KG  ++F ++ +S   ++  + I  VAG  DV+
Sbjct:   131 QPIFLRIAQ-YKAGVVPVQYRRVACRRKG-GIRFTINGHS---YFNLVLITNVAGAGDVI 185

Query:   177 AVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKA 236
             +V I +     W +M R +G  +  ++  +G  +L F+V+ S G T V++NNA P +W  
Sbjct:   186 SVSI-KGTNTRWQSMSRNWGQNWQSNAKLDGQ-ALSFKVTTSDGRT-VISNNATPRNWSF 242

Query:   237 GVAY 240
             G  Y
Sbjct:   243 GQTY 246

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009664 "plant-type cell wall organization" evidence=IEA

GO:0009826 "unidimensional cell growth" evidence=ISS;NAS

GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS

GO:0009831 "plant-type cell wall modification involved in multidimensional cell growth" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O23547	EXLB1_ARATH	No assigned EC number	0.6208	0.9635	0.952	yes	no
Q850K7	EXLB1_ORYSJ	No assigned EC number	0.4139	0.9676	0.9335	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: PtrEXLB1 expansin-related protein 1 precursor (236 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	247
PLN03023	247	PLN03023, PLN03023, Expansin-like B1; Provisional	1e-152
PLN00050	247	PLN00050, PLN00050, expansin A; Provisional	2e-21
PLN00193	256	PLN00193, PLN00193, expansin-A; Provisional	6e-18
pfam01357	82	pfam01357, Pollen_allerg_1, Pollen allergen	9e-17
pfam03330	77	pfam03330, DPBB_1, Rare lipoprotein A (RlpA)-like	3e-15
PLN00115	118	PLN00115, PLN00115, pollen allergen group 3; Provi	2e-05
PLN03024	125	PLN03024, PLN03024, Putative EG45-like domain cont	2e-04
smart00837	87	smart00837, DPBB_1, Rare lipoprotein A (RlpA)-like	7e-04

>gnl|CDD|215542 PLN03023, PLN03023, Expansin-like B1; Provisional

 Score =  423 bits (1089), Expect = e-152
 Identities = 179/243 (73%), Positives = 206/243 (84%), Gaps = 1/243 (0%)

Query: 4   YQYYLLSVMLLLPALCYSHYTSTYSRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGV 63
           +    L V++LLP LC S    TYSRATYYGSPD LGTPTGACGFGEYGRTVN  NVAGV
Sbjct: 5   HYCCFLCVIVLLPLLCKSQ-DFTYSRATYYGSPDCLGTPTGACGFGEYGRTVNGGNVAGV 63

Query: 64  SRLWKNGTGCGACYQVRCKVPQLCTDYGVYVVVTDYGEGDKTDFILSPRAYGRMALPDKS 123
           SRL++NGTGCGACYQVRCK P LC+D GV VVVTDYGEGDKTDFILSPRAY R+A P+ +
Sbjct: 64  SRLYRNGTGCGACYQVRCKAPNLCSDDGVNVVVTDYGEGDKTDFILSPRAYARLARPNMA 123

Query: 124 AELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQE 183
           AEL++YGVV+VE+RR+PC Y GYNL FKVHE+SR+P YLAI +LY AGQND+LAVEIWQE
Sbjct: 124 AELFAYGVVDVEYRRIPCRYAGYNLFFKVHEHSRFPDYLAIVMLYQAGQNDILAVEIWQE 183

Query: 184 DYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAGVAYESE 243
           D +EW  MR+A+GAV+D+ +PP+G I+LRFQVSGSAG TWV A N IPSDWKAGVAY+S 
Sbjct: 184 DCKEWRGMRKAYGAVWDMPNPPKGPITLRFQVSGSAGQTWVQAKNVIPSDWKAGVAYDSN 243

Query: 244 IQL 246
           IQL
Sbjct: 244 IQL 246

Length = 247

>gnl|CDD|165628 PLN00050, PLN00050, expansin A; Provisional

 Score = 89.3 bits (221), Expect = 2e-21
 Identities = 70/231 (30%), Positives = 113/231 (48%), Gaps = 30/231 (12%)

Query: 26  TYSRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVSR-LWKNGTGCGACYQVRCKVP 84
           T + AT+YG  D+ GT  GACG+G         N A +S  L+ NG  CGAC++++C   
Sbjct: 26  TGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVND 85

Query: 85  QL-CTDYGVYVVVTDYGEGD--------------KTDFILSPRAYGRMALPDKSAELYSY 129
            + C    + +  T++   +              +  F LS   + ++A        Y  
Sbjct: 86  NIWCLPGSIIITATNFCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIA-------QYKA 138

Query: 130 GVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWV 189
           G+V V++RRV C   G  ++F ++ +S   ++  + I  V G  D++AV I +     W 
Sbjct: 139 GIVPVQYRRVACRKSG-GIRFTINGHS---YFNLVLITNVGGAGDIVAVSI-KGSKSNWQ 193

Query: 190 AMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAGVAY 240
           AM R +G  +  +S   G  +L F+V+ S G T V++NNA PS+W  G  Y
Sbjct: 194 AMSRNWGQNWQSNSYLNGQ-ALSFKVTTSDGRT-VISNNAAPSNWAFGQTY 242

Length = 247

>gnl|CDD|215097 PLN00193, PLN00193, expansin-A; Provisional

 Score = 80.0 bits (197), Expect = 6e-18
 Identities = 69/234 (29%), Positives = 111/234 (47%), Gaps = 21/234 (8%)

Query: 26  TYSRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVSR-LWKNGTGCGACYQVRCKV- 83
           T + AT+YG  D+ GT  GACG+G    T      A +S  L+ +G  CG CY++ C   
Sbjct: 31  TKAHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGQCYRIMCDYQ 90

Query: 84  --PQLCTDYGVYVVVT-------DYG-EGDKTDFILSPRAYGRMALPD-KSAELYSYGVV 132
              + C   G  V +T       +Y    +   +   P  +  MA P  +   +Y  G+V
Sbjct: 91  ADSRWCIK-GASVTITATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGIYRGGIV 149

Query: 133 NVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMR 192
            V F+RVPC   G  ++F +  N R  ++  + I  V G   + +V I +     W+AM 
Sbjct: 150 PVLFQRVPCKKHG-GVRFTI--NGR-DYFELVLISNVGGAGSIQSVSI-KGSKTGWMAMS 204

Query: 193 RAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAGVAYESEIQL 246
           R +GA +  ++  +G  SL F+V+ + G T     N +P++W  G  + S +Q 
Sbjct: 205 RNWGANWQSNAYLDGQ-SLSFKVTTTDGQTRFFL-NVVPANWGFGQTFSSSVQF 256

Length = 256

>gnl|CDD|216453 pfam01357, Pollen_allerg_1, Pollen allergen

 Score = 72.2 bits (178), Expect = 9e-17
 Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 4/83 (4%)

Query: 150 FKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISS-PPEGA 208
           F V+  S  P++LA+ +  V G  D++AVEI +    EW+ M R +GA +   S    G 
Sbjct: 3   FTVNGGS-NPYFLAVLVENVGGDGDIVAVEIKEAGSGEWIPMSRNWGANWQSDSVLLGGP 61

Query: 209 ISLRFQVSGSAGLTWVVANNAIP 231
           +S R   S S     +VA+N IP
Sbjct: 62  LSFRVTSSDSGK--TLVADNVIP 82

This family contains allergens lol PI, PII and PIII from Lolium perenne. Length = 82

>gnl|CDD|217497 pfam03330, DPBB_1, Rare lipoprotein A (RlpA)-like double-psi beta-barrel

 Score = 68.0 bits (167), Expect = 3e-15
 Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 13/83 (15%)

Query: 60  VAGVSRLWKNGTGCGACYQVRCKV----PQLCTDY-GVYVVVTDYG-EGDKTDFILSPRA 113
            AG + L+ +GT CG CYQV+C         C     V V +TD      +  F LS  A
Sbjct: 2   AAGSASLYNDGTACGECYQVKCLTAAHPTGTCRVLRSVTVTITDRCPFPPRRHFDLSGPA 61

Query: 114 YGRMALPDKSAELYSYGVVNVEF 136
           +  +A P         G+V VE+
Sbjct: 62  FEALAKPRA-------GIVPVEY 77

Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen. Length = 77

>gnl|CDD|177729 PLN00115, PLN00115, pollen allergen group 3; Provisional

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 6/72 (8%)

Query: 178 VEIWQEDYQEWV-AMRRAFGAVFDISS--PPEGAISLRFQVSGSAGLTWVVANNAIPSDW 234
           VEI ++  ++WV  ++ +    + + S  P +G  S+RF V G     + V ++ IP  +
Sbjct: 50  VEIKEKGAKDWVDDLKESSTNTWTLKSKAPLKGPFSVRFLVKGGG---YRVVDDVIPESF 106

Query: 235 KAGVAYESEIQL 246
           KAG  Y++ IQ+
Sbjct: 107 KAGSVYKTGIQV 118

Length = 118

>gnl|CDD|178595 PLN03024, PLN03024, Putative EG45-like domain containing protein 1; Provisional

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 36/114 (31%), Positives = 52/114 (45%), Gaps = 23/114 (20%)

Query: 30  ATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVS-RLWKNGTGCGACYQVRCK-----V 83
           AT+Y S     TP+ AC    Y  T     +A  S  LW NG  CG  + V+CK     V
Sbjct: 26  ATFYTSY----TPS-AC----YRGTSFGVMIAAASDSLWNNGRVCGKMFTVKCKGPRNAV 76

Query: 84  PQLCTDYGVYVVVTDY-GEGDKTDFILSPRAYGRMALPDKSAELYSYGVVNVEF 136
           P  CT   V V + D+   G  +   LS  A+ ++A P         G++N+++
Sbjct: 77  PHPCTGKSVTVKIVDHCPSGCASTLDLSREAFAQIANP-------VAGIINIDY 123

Length = 125

>gnl|CDD|129070 smart00837, DPBB_1, Rare lipoprotein A (RlpA)-like double-psi beta-barrel

 Score = 37.4 bits (87), Expect = 7e-04
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 13/82 (15%)

Query: 66  LWKNGTGCGACYQVRC-KVPQLCTDYGVYVVVT-------DYGE-GDKTDFILSPRAYGR 116
           L+ NG  CGACY++ C   P+ C   G  + VT       +Y    D   +   PR +  
Sbjct: 8   LFNNGASCGACYEIMCVDSPKWCKP-GGSITVTATNFCPPNYALSNDNGGWCNPPRKHFD 66

Query: 117 MALP--DKSAELYSYGVVNVEF 136
           ++ P  +K A+ Y  G+V V++
Sbjct: 67  LSQPAFEKIAQ-YKAGIVPVKY 87

Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen. Length = 87

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	247
PLN03023	247	Expansin-like B1; Provisional	100.0
PLN00193	256	expansin-A; Provisional	100.0
PLN00050	247	expansin A; Provisional	100.0
PLN03024	125	Putative EG45-like domain containing protein 1; Pr	99.97
COG4305	232	Endoglucanase C-terminal domain/subunit and relate	99.96
PLN00115	118	pollen allergen group 3; Provisional	99.93
PF01357	82	Pollen_allerg_1: Pollen allergen; InterPro: IPR007	99.9
smart00837	87	DPBB_1 Rare lipoprotein A (RlpA)-like double-psi b	99.87
PF03330	78	DPBB_1: Rare lipoprotein A (RlpA)-like double-psi	99.79
PF00967	119	Barwin: Barwin family; InterPro: IPR001153 Barwin	98.99
PF07249	119	Cerato-platanin: Cerato-platanin; InterPro: IPR010	98.36
TIGR00413	208	rlpA rare lipoprotein A. This is a family of proka	97.99
COG0797	233	RlpA Lipoproteins [Cell envelope biogenesis, outer	97.8
PRK10672	361	rare lipoprotein A; Provisional	97.46
PF02015	201	Glyco_hydro_45: Glycosyl hydrolase family 45; Inte	91.63
PF03404	131	Mo-co_dimer: Mo-co oxidoreductase dimerisation dom	90.0
cd02110	317	SO_family_Moco_dimer Subgroup of sulfite oxidase (	85.55

>PLN03023 Expansin-like B1; Provisional

Probab=100.00  E-value=4.3e-73  Score=497.11  Aligned_cols=243  Identities=74%  Similarity=1.297  Sum_probs=224.9

Q ss_pred             hhhHHHHHHHHhhhcccCCCCceeeEEEEECCCCCCCCCCcccCCCCCCCCCCCceEEEechhccCCCCCCceEEEEECC
Q 025808            4 YQYYLLSVMLLLPALCYSHYTSTYSRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVSRLWKNGTGCGACYQVRCKV   83 (247)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~g~aT~Y~~~~~~g~~~GaCGy~~~~~~~~~~~~aA~s~~~~~g~~CG~C~~V~c~~   83 (247)
                      +.+++|+++++++..+.|+ +|.+++|||||++++.|+++|||||+++..+.++.++||+|+||++|++||+||||+|.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~-~W~~a~AT~Yg~~~g~gt~gGACGYg~~~~~~~g~~~aa~s~Lf~~G~~CGaCy~irC~~   83 (247)
T PLN03023          5 HYCCFLCVIVLLPLLCKSQ-DFTYSRATYYGSPDCLGTPTGACGFGEYGRTVNGGNVAGVSRLYRNGTGCGACYQVRCKA   83 (247)
T ss_pred             hhHHHHHHHHHhhhhhhcC-CcccceEEEeCCCCCCCCCCccccCCccccCCCcceeeeehhhhcCCchhcccEEeecCC
Confidence            3456666777777766555 599999999999999999999999999887778899999999999999999999999999


Q ss_pred             CCcccCCcEEEEEeeCCCCCCCceeeCHHHHhcccCCCcccccccCcEEEEEEEEEeeCCCCcceEEEEecCCCCCcEEE
Q 025808           84 PQLCTDYGVYVVVTDYGEGDKTDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLA  163 (247)
Q Consensus        84 ~~~C~~~sv~V~VtD~Cp~~~~~~DLS~~AF~~ia~~~~~~~~~~~G~v~I~~r~V~C~~~g~ni~~~v~~gS~~~~w~a  163 (247)
                      +++|.+++|+|+|||.||+++.|||||..||.+||.|++.+++++.|+|+|+||||||.++|++|+|+|+++|.+|+||+
T Consensus        84 ~~~C~~~~v~V~iTd~~~~~~~hFdLS~~AF~~iA~pg~~~~l~~aGiv~v~YrRVpC~~~G~~i~F~V~~~s~~p~yl~  163 (247)
T PLN03023         84 PNLCSDDGVNVVVTDYGEGDKTDFILSPRAYARLARPNMAAELFAYGVVDVEYRRIPCRYAGYNLFFKVHEHSRFPDYLA  163 (247)
T ss_pred             CCccCCCCeEEEEEeCCCCCCCccccCHHHHHHHhCccccchhccCcEEEeEEEEEecccCCCceEEEEecCCCCCceEE
Confidence            88999999999999999999999999999999999998888888999999999999999999999999999995599999


Q ss_pred             EEEEEecCccceeEEEEEecCCcceEEcccccCceeccCCCCCCCeeEEEEEEecCCCEEEEEecccCCCCCCCcEEecC
Q 025808          164 IAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAGVAYESE  243 (247)
Q Consensus       164 ~~v~n~~g~~~I~sVev~~~~~~~W~~m~r~~g~~W~~~~~~~gp~~lr~~vt~~~g~~~iv~~~vip~~w~~g~~y~t~  243 (247)
                      ++|.|++|.++|++|||+++++..|++|+|+||++|+.+.+++|||+|||+++.++|+++++++||||++|++|++|+++
T Consensus       164 vlv~~vgG~GdI~~V~Ik~~~~~~W~~M~rnwGa~W~~~~~l~Gp~slrf~v~~~~g~~~vva~nViPa~Wk~G~TY~s~  243 (247)
T PLN03023        164 IVMLYQAGQNDILAVEIWQEDCKEWRGMRKAYGAVWDMPNPPKGPITLRFQVSGSAGQTWVQAKNVIPSDWKAGVAYDSN  243 (247)
T ss_pred             EEEEEcCCCccEEEEEEEecCCCCceECccCCcceeEcCCCCCCceeEEEEEEeCCCcEEEEECceeCCCCCCCCEEecc
Confidence            99999999999999999987788999999999999999999999999999999877745589999999999999999999


Q ss_pred             CCCC
Q 025808          244 IQLK  247 (247)
Q Consensus       244 ~qf~  247 (247)
                      +||.
T Consensus       244 vq~~  247 (247)
T PLN03023        244 IQLD  247 (247)
T ss_pred             cccC
Confidence            9995

>PLN00193 expansin-A; Provisional

Probab=100.00  E-value=2.1e-64  Score=444.27  Aligned_cols=211  Identities=28%  Similarity=0.576  Sum_probs=189.7

Q ss_pred             CCCCceeeEEEEECCCCCCCCCCcccCCCCCCCCCCCceEEEec-hhccCCCCCCceEEEEEC---CCCcccCC-cEEEE
Q 025808           21 SHYTSTYSRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVS-RLWKNGTGCGACYQVRCK---VPQLCTDY-GVYVV   95 (247)
Q Consensus        21 ~~~~~~~g~aT~Y~~~~~~g~~~GaCGy~~~~~~~~~~~~aA~s-~~~~~g~~CG~C~~V~c~---~~~~C~~~-sv~V~   95 (247)
                      ..++|++++|||||.+|+.|+++|||||+++...+++.++||+| +||++|++||+||||+|.   +++.|.++ +|+|+
T Consensus        26 ~~~~W~~a~AT~Yg~~d~~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyev~C~~~~~~~~C~~g~sV~Vt  105 (256)
T PLN00193         26 TPSGWTKAHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGQCYRIMCDYQADSRWCIKGASVTIT  105 (256)
T ss_pred             CCCCceeeEEEEcCCCCCCCCCCcccCCCCccccCCCceeeecCHhHccCCccccCeEEEECCCCCCCccccCCCeEEEE
Confidence            35589999999999999989999999999988788899999999 999999999999999994   56689765 89999


Q ss_pred             EeeCCCC-----------C---CCceeeCHHHHhcccCCCcccccccCcEEEEEEEEEeeCCCCcceEEEEecCCCCCcE
Q 025808           96 VTDYGEG-----------D---KTDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHY  161 (247)
Q Consensus        96 VtD~Cp~-----------~---~~~~DLS~~AF~~ia~~~~~~~~~~~G~v~I~~r~V~C~~~g~ni~~~v~~gS~~~~w  161 (247)
                      |||+||.           |   +.|||||+.||.+||.       ++.|+|+|+||||+|.++| ||+|+|++   ++||
T Consensus       106 ~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~-------~~~Giv~V~yrRVpC~~~G-~i~f~v~g---n~y~  174 (256)
T PLN00193        106 ATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGI-------YRGGIVPVLFQRVPCKKHG-GVRFTING---RDYF  174 (256)
T ss_pred             EecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhh-------hcCCeEeEEEEEeccccCC-CcEEEEcC---CccE
Confidence            9999996           3   4799999999999994       5799999999999999999 99999984   6899


Q ss_pred             EEEEEEEecCccceeEEEEEecCCcceEEcccccCceeccCCCCCC-CeeEEEEEEecCCCEEEEEecccCCCCCCCcEE
Q 025808          162 LAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEG-AISLRFQVSGSAGLTWVVANNAIPSDWKAGVAY  240 (247)
Q Consensus       162 ~a~~v~n~~g~~~I~sVev~~~~~~~W~~m~r~~g~~W~~~~~~~g-p~~lr~~vt~~~g~~~iv~~~vip~~w~~g~~y  240 (247)
                      ++++|.|++|.++|++|||++++ .+|++|+|+||++|+.+.++.+ ||+||  ||+.+| +++++.||||++|++|++|
T Consensus       175 ~~vlv~nv~G~gdV~~v~Ik~~~-~~W~~M~R~wGa~W~~~~~l~g~plsfR--vts~~G-~~~~~~~viPa~W~~G~ty  250 (256)
T PLN00193        175 ELVLISNVGGAGSIQSVSIKGSK-TGWMAMSRNWGANWQSNAYLDGQSLSFK--VTTTDG-QTRFFLNVVPANWGFGQTF  250 (256)
T ss_pred             EEEEEEEeCCCccEEEEEEecCC-CCeeECcccccceeEecCCCCCCCEEEE--EEEcCC-eEEEECceeCCCCCCCCeE
Confidence            99999999999999999999754 5899999999999999877666 65555  555567 8999999999999999999


Q ss_pred             ecCCCC
Q 025808          241 ESEIQL  246 (247)
Q Consensus       241 ~t~~qf  246 (247)
                      ++++||
T Consensus       251 ~s~vqf  256 (256)
T PLN00193        251 SSSVQF  256 (256)
T ss_pred             ecCccC
Confidence            999998

>PLN00050 expansin A; Provisional

Probab=100.00  E-value=1.1e-63  Score=438.14  Aligned_cols=209  Identities=33%  Similarity=0.616  Sum_probs=188.3

Q ss_pred             CCCceeeEEEEECCCCCCCCCCcccCCCCCCCCCCCceEEEec-hhccCCCCCCceEEEEECCC-CcccCCcEEEEEeeC
Q 025808           22 HYTSTYSRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVS-RLWKNGTGCGACYQVRCKVP-QLCTDYGVYVVVTDY   99 (247)
Q Consensus        22 ~~~~~~g~aT~Y~~~~~~g~~~GaCGy~~~~~~~~~~~~aA~s-~~~~~g~~CG~C~~V~c~~~-~~C~~~sv~V~VtD~   99 (247)
                      ..+|..++|||||.+++.|+++|||||+++..++++.++||+| +||++|++||+||||+|.+. .+|.+++|+|+|||+
T Consensus        22 ~~~W~~a~AT~Yg~~dg~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyeV~C~~~~~~C~~gsV~V~itd~  101 (247)
T PLN00050         22 GSGWTGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDNIWCLPGSIIITATNF  101 (247)
T ss_pred             CCCccccEEEEcCCCCCCCCCCcccCCCCccccCCCceeeeccHhHccCCccccceEEEEcCCCCcccCCCcEEEEEecC
Confidence            4579999999999999999999999999988788899999999 99999999999999999654 479989999999999


Q ss_pred             CCC--------------CCCceeeCHHHHhcccCCCcccccccCcEEEEEEEEEeeCCCCcceEEEEecCCCCCcEEEEE
Q 025808          100 GEG--------------DKTDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIA  165 (247)
Q Consensus       100 Cp~--------------~~~~~DLS~~AF~~ia~~~~~~~~~~~G~v~I~~r~V~C~~~g~ni~~~v~~gS~~~~w~a~~  165 (247)
                      ||.              ++.|||||++||.+||.       ++.|+|+|+||||||.++| ||+|+|+++   +||++++
T Consensus       102 CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA~-------~~aGii~V~yRRVpC~~~G-~i~f~v~g~---sy~~~vl  170 (247)
T PLN00050        102 CPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQ-------YKAGIVPVQYRRVACRKSG-GIRFTINGH---SYFNLVL  170 (247)
T ss_pred             CCCCcCcCccCCCcCCCCCcccccCHHHHHHHhh-------hcCCeeeeEEEEecCcCCC-CeEEEEcCC---ceeEEEE
Confidence            996              34899999999999994       5799999999999999999 999999874   4999999


Q ss_pred             EEEecCccceeEEEEEecCCcceEEcccccCceeccCCCCCC-CeeEEEEEEecCCCEEEEEecccCCCCCCCcEEecCC
Q 025808          166 ILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEG-AISLRFQVSGSAGLTWVVANNAIPSDWKAGVAYESEI  244 (247)
Q Consensus       166 v~n~~g~~~I~sVev~~~~~~~W~~m~r~~g~~W~~~~~~~g-p~~lr~~vt~~~g~~~iv~~~vip~~w~~g~~y~t~~  244 (247)
                      |.|++|.++|++|||++++ .+|++|+|+||++|+.+.++.+ ||+|||  |+.+| +++++.||||++|++|++|++. 
T Consensus       171 v~nv~G~gdi~~V~ikg~~-~~W~~M~R~wGa~W~~~~~l~g~~lsfRv--t~~~G-~~~~~~~V~Pa~W~~G~ty~~~-  245 (247)
T PLN00050        171 ITNVGGAGDIVAVSIKGSK-SNWQAMSRNWGQNWQSNSYLNGQALSFKV--TTSDG-RTVISNNAAPSNWAFGQTYTGM-  245 (247)
T ss_pred             EEEcCCCccEEEEEEecCC-CCeeECccccCceeEccCCCCCCcEEEEE--EecCC-cEEEECceeCCCCCCCCeEecC-
Confidence            9999999999999999753 5799999999999998876666 666555  45567 8999999999999999999995 


Q ss_pred             CC
Q 025808          245 QL  246 (247)
Q Consensus       245 qf  246 (247)
                      ||
T Consensus       246 ~f  247 (247)
T PLN00050        246 QF  247 (247)
T ss_pred             cC
Confidence            88

>PLN03024 Putative EG45-like domain containing protein 1; Provisional

Probab=99.97  E-value=6.6e-30  Score=203.72  Aligned_cols=118  Identities=31%  Similarity=0.502  Sum_probs=96.4

Q ss_pred             CCchhhHHHHHHHHhhhcccCCCCceeeEEEEECCCCCCCCCCcccCCCCCCCCCCCceEEEec-hhccCCCCCCceEEE
Q 025808            1 MGLYQYYLLSVMLLLPALCYSHYTSTYSRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVS-RLWKNGTGCGACYQV   79 (247)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~aT~Y~~~~~~g~~~GaCGy~~~~~~~~~~~~aA~s-~~~~~g~~CG~C~~V   79 (247)
                      |.|.-|+++.+++++.+..    ....|+||||++.     ..|||+ ++   .+++.++||+| ++|++|+.||+||||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~----~~~~G~AT~Y~~~-----~~gAC~-~~---~~~g~~iaAls~~lf~~G~~CG~c~~V   67 (125)
T PLN03024          1 MSKRILIFSTVLVFLFSVS----YATPGIATFYTSY-----TPSACY-RG---TSFGVMIAAASDSLWNNGRVCGKMFTV   67 (125)
T ss_pred             CceeeHHHHHHHHHHhhhh----cccceEEEEeCCC-----CCcccc-CC---CCCCCEeEEeCHHHcCCCcccCceEEE
Confidence            6665566666655555444    3345999999975     368994 43   24688999999 999999999999999


Q ss_pred             EECCC-----CcccCCcEEEEEeeCCC-CCCCceeeCHHHHhcccCCCcccccccCcEEEEEEEE
Q 025808           80 RCKVP-----QLCTDYGVYVVVTDYGE-GDKTDFILSPRAYGRMALPDKSAELYSYGVVNVEFRR  138 (247)
Q Consensus        80 ~c~~~-----~~C~~~sv~V~VtD~Cp-~~~~~~DLS~~AF~~ia~~~~~~~~~~~G~v~I~~r~  138 (247)
                      +|.++     ..|++++|+|+|+|+|| +|..|||||++||++||++       +.|+++|+|.+
T Consensus        68 ~C~~~~~~~~~~c~gksV~V~VtD~CP~~C~~~~DLS~~AF~~iA~~-------~aG~v~V~y~~  125 (125)
T PLN03024         68 KCKGPRNAVPHPCTGKSVTVKIVDHCPSGCASTLDLSREAFAQIANP-------VAGIINIDYIP  125 (125)
T ss_pred             EECCCCccccccccCCeEEEEEEcCCCCCCCCceEcCHHHHHHhcCc-------cCCEEEEEEeC
Confidence            99765     37999999999999999 6889999999999999965       68999999964

>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]

Probab=99.96  E-value=6.6e-28  Score=198.83  Aligned_cols=198  Identities=21%  Similarity=0.280  Sum_probs=158.0

Q ss_pred             cCCCCceeeEEEEECCCCCCCCCCcccCCCCCCCCCCCceEEEec-hhccCC----CCCCceEEEEECCCCcccCCcEEE
Q 025808           20 YSHYTSTYSRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVS-RLWKNG----TGCGACYQVRCKVPQLCTDYGVYV   94 (247)
Q Consensus        20 ~~~~~~~~g~aT~Y~~~~~~g~~~GaCGy~~~~~~~~~~~~aA~s-~~~~~g----~~CG~C~~V~c~~~~~C~~~sv~V   94 (247)
                      .+-+..+.|-|||-+...    .+||--.   ++.+..+.+.|+| +.-+-|    +.-|+.++|.  +|    +++.+|
T Consensus        25 ~awd~~f~G~ATyTgsGY----sGGAflL---DPI~sd~eITAlNPaqlNlGGipAAmAGaYLrVq--GP----KG~TTV   91 (232)
T COG4305          25 AAWDDLFEGYATYTGSGY----SGGAFLL---DPIPSDMEITALNPAQLNLGGIPAAMAGAYLRVQ--GP----KGKTTV   91 (232)
T ss_pred             cccccccceeEEEecccc----cCceEEe---cCcCCcceeeecCHHHcccCCchhhhccceEEEE--CC----CCceEE
Confidence            334566899999977653    5677643   4445567899999 666544    6799999998  55    678899


Q ss_pred             EEeeCCCCC-CCceeeCHHHHhcccCCCcccccccCcEEEEEEEEEeeCCCCcceEEEEecCCCCCcEEEEEEEEecCcc
Q 025808           95 VVTDYGEGD-KTDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQN  173 (247)
Q Consensus        95 ~VtD~Cp~~-~~~~DLS~~AF~~ia~~~~~~~~~~~G~v~I~~r~V~C~~~g~ni~~~v~~gS~~~~w~a~~v~n~~g~~  173 (247)
                      .|||..|+. .+.+|||+.||.+|+       .+.+|+|+|+||.|+-|.+| |+.+++|||| +.||-++||+||  +.
T Consensus        92 YVTDlYPegasGaLDLSpNAFakIG-------nm~qGrIpvqWrvv~aPvtG-N~~YRiKeGS-s~WWAAIQVRnH--~y  160 (232)
T COG4305          92 YVTDLYPEGASGALDLSPNAFAKIG-------NMKQGRIPVQWRVVKAPVTG-NFTYRIKEGS-SRWWAAIQVRNH--KY  160 (232)
T ss_pred             EEecccccccccccccChHHHhhhc-------chhcCccceeEEEecccccc-cEEEEEecCC-ccceeeeeeecc--cC
Confidence            999999986 589999999999999       46899999999999999999 9999999999 899999999999  99


Q ss_pred             ceeEEEEEecCCcceEEcccccCceeccCCCCCCCeeEEEEEEecCCCEEEEEe-cccCCCCCCCcEEe--cCCCCC
Q 025808          174 DVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVAN-NAIPSDWKAGVAYE--SEIQLK  247 (247)
Q Consensus       174 ~I~sVev~~~~~~~W~~m~r~~g~~W~~~~~~~gp~~lr~~vt~~~g~~~iv~~-~vip~~w~~g~~y~--t~~qf~  247 (247)
                      +|.++|+.+  .+.|..|.+.+||+|...+...+|+  .+|.|++.| +.++-. -.+|.. ...+.|.  ++|||+
T Consensus       161 PV~KlE~~q--dg~WinlpK~dYNhFVgT~LG~~pL--~~RmTDIRG-~~l~DtlP~Lpk~-asSKaY~V~G~VQFs  231 (232)
T COG4305         161 PVMKLEYEQ--DGKWINLPKMDYNHFVGTNLGTGPL--KVRMTDIRG-KVLKDTLPKLPKS-ASSKAYTVPGHVQFS  231 (232)
T ss_pred             ceEEEEEec--CCeEeeccccccceeeccccCCCce--EEEEeeccc-ceeeccccccccc-ccCCceeecceeecC
Confidence            999999985  4789999999999998877777885  455678888 555433 233433 2234454  678885

>PLN00115 pollen allergen group 3; Provisional

Probab=99.93  E-value=2.6e-25  Score=175.22  Aligned_cols=92  Identities=28%  Similarity=0.545  Sum_probs=81.9

Q ss_pred             cceEEEEecCCCCCcEEEEEEEEecCccceeEEEEEecCCcceE-EcccccCceeccC--CCCCCCeeEEEEEEecCCCE
Q 025808          146 YNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWV-AMRRAFGAVFDIS--SPPEGAISLRFQVSGSAGLT  222 (247)
Q Consensus       146 ~ni~~~v~~gS~~~~w~a~~v~n~~g~~~I~sVev~~~~~~~W~-~m~r~~g~~W~~~--~~~~gp~~lr~~vt~~~g~~  222 (247)
                      ++|+|+|+++| |++||+|++ |    ++|.+|||++.++..|+ +|+|+||++|+.+  .|++|||++||+++  +| +
T Consensus        24 ~~v~F~V~~gS-np~yL~ll~-~----~dI~~V~Ik~~g~~~W~~~M~rswGavW~~~s~~pl~GPlS~R~t~~--~G-~   94 (118)
T PLN00115         24 TEVTFKVGKGS-SSTSLELVT-N----VAISEVEIKEKGAKDWVDDLKESSTNTWTLKSKAPLKGPFSVRFLVK--GG-G   94 (118)
T ss_pred             CceEEEECCCC-CcceEEEEE-e----CCEEEEEEeecCCCcccCccccCccceeEecCCCCCCCceEEEEEEe--CC-C
Confidence            59999999999 899998765 4    47999999998888999 9999999999954  47899988888764  45 7


Q ss_pred             EEEEecccCCCCCCCcEEecCCCC
Q 025808          223 WVVANNAIPSDWKAGVAYESEIQL  246 (247)
Q Consensus       223 ~iv~~~vip~~w~~g~~y~t~~qf  246 (247)
                      +++++||||++|++|++|++++||
T Consensus        95 ~~va~nViPa~Wk~G~tY~s~vq~  118 (118)
T PLN00115         95 YRVVDDVIPESFKAGSVYKTGIQV  118 (118)
T ss_pred             EEEECceECCCCCCCCEEeccccC
Confidence            899999999999999999999998

>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []

Probab=99.90  E-value=1.6e-23  Score=155.96  Aligned_cols=80  Identities=41%  Similarity=0.770  Sum_probs=66.0

Q ss_pred             eEEEEecCCCCCcEEEEEEEEecCccceeEEEEEecCCcceEEcccccCceeccC-CCCCCCeeEEEEEEecC-CCEEEE
Q 025808          148 LQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDIS-SPPEGAISLRFQVSGSA-GLTWVV  225 (247)
Q Consensus       148 i~~~v~~gS~~~~w~a~~v~n~~g~~~I~sVev~~~~~~~W~~m~r~~g~~W~~~-~~~~gp~~lr~~vt~~~-g~~~iv  225 (247)
                      |+|+|+++| ++|||+++|.|++|.++|++|||++.++.+|++|+|+||++|+.+ +++++||+|||  |+.+ | ++++
T Consensus         1 v~f~V~~gS-~~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~~m~r~wGa~W~~~~~~~~~pls~Rv--ts~~~G-~~vv   76 (82)
T PF01357_consen    1 VRFTVKGGS-NPYYLAVLVKNVGGDGDIKAVEVKQSGSGNWIPMKRSWGAVWQIDSNPPGGPLSFRV--TSGDSG-QTVV   76 (82)
T ss_dssp             EEEEE-TT--BTTEEEEEEEECCTTS-EEEEEEEETTSSS-EE-EEECTTEEEEE-SS--SSEEEEE--EETTTS-EEEE
T ss_pred             CEEEECCCC-CCcEEEEEEEEcCCCccEEEEEEEeCCCCCceEeecCcCceEEECCCCcCCCEEEEE--EEcCCC-eEEE
Confidence            689999999 999999999999999999999999999999999999999999986 88899977766  5555 6 9999


Q ss_pred             EecccC
Q 025808          226 ANNAIP  231 (247)
Q Consensus       226 ~~~vip  231 (247)
                      ++||||
T Consensus        77 ~~nViP   82 (82)
T PF01357_consen   77 ADNVIP   82 (82)
T ss_dssp             EEEEE-
T ss_pred             EecccC
Confidence            999998

They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.

>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel

Probab=99.87  E-value=1.2e-22  Score=152.67  Aligned_cols=70  Identities=34%  Similarity=0.752  Sum_probs=62.2

Q ss_pred             EEEec-hhccCCCCCCceEEEEEC-CCCcccC-CcEEEEEeeCCCCC--------------CCceeeCHHHHhcccCCCc
Q 025808           60 VAGVS-RLWKNGTGCGACYQVRCK-VPQLCTD-YGVYVVVTDYGEGD--------------KTDFILSPRAYGRMALPDK  122 (247)
Q Consensus        60 ~aA~s-~~~~~g~~CG~C~~V~c~-~~~~C~~-~sv~V~VtD~Cp~~--------------~~~~DLS~~AF~~ia~~~~  122 (247)
                      +||+| +||++|++||+||||+|. +++.|.+ ++|+|+|||+||.+              +.|||||.+||.+||.   
T Consensus         1 taA~s~~lf~~G~~CG~Cy~v~C~~~~~~C~~~~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~iA~---   77 (87)
T smart00837        1 TAALSTALFNNGASCGACYEIMCVDSPKWCKPGGSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKIAQ---   77 (87)
T ss_pred             CcccCHHHccCCccccceEEEEeCCCCCcccCCCeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHHhh---
Confidence            48999 999999999999999996 5667976 48999999999962              5799999999999995   


Q ss_pred             ccccccCcEEEEEE
Q 025808          123 SAELYSYGVVNVEF  136 (247)
Q Consensus       123 ~~~~~~~G~v~I~~  136 (247)
                          ++.|+|+|+|
T Consensus        78 ----~~~Gvi~v~y   87 (87)
T smart00837       78 ----YKAGIVPVKY   87 (87)
T ss_pred             ----hcCCEEeeEC
Confidence                4799999987

Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.

>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures

Probab=99.79  E-value=1.6e-19  Score=132.75  Aligned_cols=70  Identities=40%  Similarity=0.652  Sum_probs=58.6

Q ss_pred             EEEec-hhccCCCCCCceEEEEEC--CCCc--ccC--CcEEEEEeeCCCCCC-CceeeCHHHHhcccCCCcccccccCcE
Q 025808           60 VAGVS-RLWKNGTGCGACYQVRCK--VPQL--CTD--YGVYVVVTDYGEGDK-TDFILSPRAYGRMALPDKSAELYSYGV  131 (247)
Q Consensus        60 ~aA~s-~~~~~g~~CG~C~~V~c~--~~~~--C~~--~sv~V~VtD~Cp~~~-~~~DLS~~AF~~ia~~~~~~~~~~~G~  131 (247)
                      +||++ .+|++|.+||+||+++|.  .+..  |..  ++|+|+|+|+||+|. .|||||+.||++|+.+       +.|+
T Consensus         1 t~a~~~~~y~~g~~cG~~~~~~~~~~a~~~~~~~~~~ksV~v~V~D~Cp~~~~~~lDLS~~aF~~la~~-------~~G~   73 (78)
T PF03330_consen    1 TAAGSATWYDNGTACGQCYQVTCLTAASATGTCKVGNKSVTVTVVDRCPGCPPNHLDLSPAAFKALADP-------DAGV   73 (78)
T ss_dssp             EEEE-HHHHGGGTTTT-EEEEEE---SSTT--BESEECEEEEEEEEE-TTSSSSEEEEEHHHHHHTBST-------TCSS
T ss_pred             CeEEEhhhcCCCCcCCCeeeccccccCCccceEEecCCeEEEEEEccCCCCcCCEEEeCHHHHHHhCCC-------CceE
Confidence            58999 999999999999999993  2323  776  999999999999975 8999999999999954       7999


Q ss_pred             EEEEE
Q 025808          132 VNVEF  136 (247)
Q Consensus       132 v~I~~  136 (247)
                      ++|+|
T Consensus        74 i~V~w   78 (78)
T PF03330_consen   74 IPVEW   78 (78)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            99998

They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.

>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds

Probab=98.99  E-value=4.1e-10  Score=87.48  Aligned_cols=63  Identities=24%  Similarity=0.461  Sum_probs=45.8

Q ss_pred             CCCCCceEEEEECCCCcccCCcEEEEEeeCCCCCCCceeeCHHHHhcccCCCcccccccCcEEEEEEEEEee
Q 025808           70 GTGCGACYQVRCKVPQLCTDYGVYVVVTDYGEGDKTDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPC  141 (247)
Q Consensus        70 g~~CG~C~~V~c~~~~~C~~~sv~V~VtD~Cp~~~~~~DLS~~AF~~ia~~~~~~~~~~~G~v~I~~r~V~C  141 (247)
                      -..||+|++|+.+.    ++.+++|+|+|+|+.+  +|||.+.+|.+|...+.   ....|.+.|+|++|+|
T Consensus        57 q~~CGkClrVTNt~----tga~~~~RIVDqCsnG--GLDld~~vF~~iDtdG~---G~~~Ghl~V~y~fV~C  119 (119)
T PF00967_consen   57 QDSCGKCLRVTNTA----TGAQVTVRIVDQCSNG--GLDLDPTVFNQIDTDGQ---GYAQGHLIVDYEFVDC  119 (119)
T ss_dssp             GGGTT-EEEEE-TT----T--EEEEEEEEE-SSS--SEES-SSSHHHH-SSSH---HHHHTEEEEEEEEE--
T ss_pred             cccccceEEEEecC----CCcEEEEEEEEcCCCC--CcccChhHHhhhccCCc---ccccceEEEEEEEEcC
Confidence            36899999999654    3679999999999966  99999999999975432   3468999999999999

It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.

>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family

Probab=98.36  E-value=2.6e-06  Score=67.45  Aligned_cols=69  Identities=22%  Similarity=0.496  Sum_probs=49.2

Q ss_pred             ceEEEec--hhccCCCCCCceEEEEECCCCcccCCcEEEEEeeCCCCCCCceeeCHHHHhcccCCCcccccccCcEEEEE
Q 025808           58 ANVAGVS--RLWKNGTGCGACYQVRCKVPQLCTDYGVYVVVTDYGEGDKTDFILSPRAYGRMALPDKSAELYSYGVVNVE  135 (247)
Q Consensus        58 ~~~aA~s--~~~~~g~~CG~C~~V~c~~~~~C~~~sv~V~VtD~Cp~~~~~~DLS~~AF~~ia~~~~~~~~~~~G~v~I~  135 (247)
                      -.|.+..  +-| |...||.|+|++-.      +++|.|..+|.=+   ..|+|+.+||+.|.+..    ....|+|+++
T Consensus        43 p~IGg~~~V~gW-nS~~CGtC~~lty~------g~si~vlaID~a~---~gfnis~~A~n~LT~g~----a~~lG~V~a~  108 (119)
T PF07249_consen   43 PYIGGAPAVAGW-NSPNCGTCWKLTYN------GRSIYVLAIDHAG---GGFNISLDAMNDLTNGQ----AVELGRVDAT  108 (119)
T ss_dssp             TSEEEETT--ST-T-TTTT-EEEEEET------TEEEEEEEEEE-S---SSEEE-HHHHHHHHTS-----CCCC-EEE-E
T ss_pred             CeeccccccccC-CCCCCCCeEEEEEC------CeEEEEEEEecCC---CcccchHHHHHHhcCCc----ccceeEEEEE
Confidence            4577776  667 45799999999962      5799999999854   46999999999998642    2357999999


Q ss_pred             EEEEe
Q 025808          136 FRRVP  140 (247)
Q Consensus       136 ~r~V~  140 (247)
                      |++|+
T Consensus       109 ~~qV~  113 (119)
T PF07249_consen  109 YTQVD  113 (119)
T ss_dssp             EEEE-
T ss_pred             EEEcC
Confidence            99996

It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.

>TIGR00413 rlpA rare lipoprotein A

Probab=97.99  E-value=8e-05  Score=64.14  Aligned_cols=95  Identities=24%  Similarity=0.181  Sum_probs=68.8

Q ss_pred             eEEEEECCCCCCCCCCcccCCCCCCCCCCCceEEEechhccCCCCCCceEEEEECCCCcccCCcEEEEEeeCCCCC-CCc
Q 025808           28 SRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVSRLWKNGTGCGACYQVRCKVPQLCTDYGVYVVVTDYGEGD-KTD  106 (247)
Q Consensus        28 g~aT~Y~~~~~~g~~~GaCGy~~~~~~~~~~~~aA~s~~~~~g~~CG~C~~V~c~~~~~C~~~sv~V~VtD~Cp~~-~~~  106 (247)
                      |.|+|||..-. | ..-|.|-. ++   ...++||-..|     ..|...+|+...    ++++|+|+|.|++|-- ..-
T Consensus         1 G~ASwYg~~f~-G-~~TAnGe~-y~---~~~~tAAHktL-----PlgT~V~VtNl~----ngrsviVrVnDRGPf~~gRi   65 (208)
T TIGR00413         1 GLASWYGPKFH-G-RKTANGEV-YN---MKALTAAHKTL-----PFNTYVKVTNLH----NNRSVIVRINDRGPFSDDRI   65 (208)
T ss_pred             CEEeEeCCCCC-C-CcCCCCee-cC---CCccccccccC-----CCCCEEEEEECC----CCCEEEEEEeCCCCCCCCCE
Confidence            67999997421 1 23444421 11   12355555433     569999999765    3789999999999974 468


Q ss_pred             eeeCHHHHhcccCCCcccccccCcEEEEEEEEEeeCCC
Q 025808          107 FILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYK  144 (247)
Q Consensus       107 ~DLS~~AF~~ia~~~~~~~~~~~G~v~I~~r~V~C~~~  144 (247)
                      +|||+.|+.+|+       ....|+.+|+.+.+.....
T Consensus        66 IDLS~aAA~~Lg-------~~~~G~a~V~vevl~~~~~   96 (208)
T TIGR00413        66 IDLSHAAAREIG-------LISRGVGQVRIEVLHVAKN   96 (208)
T ss_pred             EECCHHHHHHcC-------CCcCceEEEEEEEEecCCC
Confidence            999999999999       4579999999999987653

This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.

>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]

Probab=97.80  E-value=0.00017  Score=63.15  Aligned_cols=67  Identities=21%  Similarity=0.096  Sum_probs=55.0

Q ss_pred             ceEEEec--hhccCCCCCCceEEEEECCCCcccCCcEEEEEeeCCCCC-CCceeeCHHHHhcccCCCcccccccCcEEEE
Q 025808           58 ANVAGVS--RLWKNGTGCGACYQVRCKVPQLCTDYGVYVVVTDYGEGD-KTDFILSPRAYGRMALPDKSAELYSYGVVNV  134 (247)
Q Consensus        58 ~~~aA~s--~~~~~g~~CG~C~~V~c~~~~~C~~~sv~V~VtD~Cp~~-~~~~DLS~~AF~~ia~~~~~~~~~~~G~v~I  134 (247)
                      .++||--  +|       |.-.+|+..++    +++|+|+|.|++|-- ...+|||..|+++|+.       ...|+.+|
T Consensus       109 ~~tAAH~TLP~-------~t~v~VtNl~N----grsvvVRINDRGPf~~gRiIDlS~aAA~~l~~-------~~~G~a~V  170 (233)
T COG0797         109 ALTAAHKTLPL-------PTYVRVTNLDN----GRSVVVRINDRGPFVSGRIIDLSKAAADKLGM-------IRSGVAKV  170 (233)
T ss_pred             ccccccccCCC-------CCEEEEEEccC----CcEEEEEEeCCCCCCCCcEeEcCHHHHHHhCC-------ccCceEEE
Confidence            3466655  44       77889997663    789999999999974 4689999999999994       57999999


Q ss_pred             EEEEEeeC
Q 025808          135 EFRRVPCW  142 (247)
Q Consensus       135 ~~r~V~C~  142 (247)
                      +.+.+.+.
T Consensus       171 ~i~~l~~~  178 (233)
T COG0797         171 RIEVLGVA  178 (233)
T ss_pred             EEEEeccc
Confidence            99999866

>PRK10672 rare lipoprotein A; Provisional

Probab=97.46  E-value=0.0013  Score=61.12  Aligned_cols=91  Identities=19%  Similarity=0.091  Sum_probs=61.3

Q ss_pred             eeEEEEECCCCCCCCCCcccCCCCCCCCCCCceEEEechhccCCCCCCceEEEEECCCCcccCCcEEEEEeeCCCCC-CC
Q 025808           27 YSRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVSRLWKNGTGCGACYQVRCKVPQLCTDYGVYVVVTDYGEGD-KT  105 (247)
Q Consensus        27 ~g~aT~Y~~~~~~g~~~GaCGy~~~~~~~~~~~~aA~s~~~~~g~~CG~C~~V~c~~~~~C~~~sv~V~VtD~Cp~~-~~  105 (247)
                      .|.|+|||.... | ..-|.|-- ++   ...++||-..|     --|...+|+....    +++|+|+|.|++|-- ..
T Consensus        80 ~G~ASwYg~~f~-G-~~TA~Ge~-~~---~~~~tAAH~tL-----Plps~vrVtNl~n----grsvvVrVnDRGP~~~gR  144 (361)
T PRK10672         80 AGLAAIYDAEAG-S-NLTASGER-FD---PNALTAAHPTL-----PIPSYVRVTNLAN----GRMIVVRINDRGPYGPGR  144 (361)
T ss_pred             EEEEEEeCCccC-C-CcCcCcee-ec---CCcCeeeccCC-----CCCCEEEEEECCC----CcEEEEEEeCCCCCCCCC
Confidence            688888886421 1 11222211 01   12356665522     3489999997663    789999999999974 46


Q ss_pred             ceeeCHHHHhcccCCCcccccccCcEEEEEEEEE
Q 025808          106 DFILSPRAYGRMALPDKSAELYSYGVVNVEFRRV  139 (247)
Q Consensus       106 ~~DLS~~AF~~ia~~~~~~~~~~~G~v~I~~r~V  139 (247)
                      -+|||..|+++|+.       ...+.|.|+.-.|
T Consensus       145 iiDLS~aAA~~Lg~-------~~~~~V~ve~i~v  171 (361)
T PRK10672        145 VIDLSRAAADRLNT-------SNNTKVRIDPIIV  171 (361)
T ss_pred             eeEcCHHHHHHhCC-------CCCceEEEEEEee
Confidence            89999999999994       3457788877766

>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3

Probab=91.63  E-value=0.19  Score=43.30  Aligned_cols=52  Identities=23%  Similarity=0.266  Sum_probs=31.6

Q ss_pred             EEEec-hhccCCCCCCceEEEEECCCCcccCCcEEEEEeeCCCC-CCCceeeCHH
Q 025808           60 VAGVS-RLWKNGTGCGACYQVRCKVPQLCTDYGVYVVVTDYGEG-DKTDFILSPR  112 (247)
Q Consensus        60 ~aA~s-~~~~~g~~CG~C~~V~c~~~~~C~~~sv~V~VtD~Cp~-~~~~~DLS~~  112 (247)
                      +||.+ .=..+...|++|||++=++. .-.+|+.+|+|++.--. ..+||||...
T Consensus        70 faA~~~~G~~e~~~Cc~Cy~LtFt~g-~l~GKkmiVQ~tNtG~dlg~n~FDl~iP  123 (201)
T PF02015_consen   70 FAAASITGGSESSWCCACYELTFTSG-PLKGKKMIVQVTNTGGDLGSNQFDLAIP  123 (201)
T ss_dssp             EEEEE-TT--HHHHTT-EEEEEE-SS-TTTT-EEEEEEEEE-TTTTTTEEEEE-T
T ss_pred             eeeeeecCCCCCCcccceEEEEEcCC-CcCCCEeEEEecccCCCCCCCeEEEEeC
Confidence            55555 43333468999999997652 12467899999998654 4589997543

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 45 GH45 from CAZY comprises enzymes with only one known activity; endoglucanase (3.2.1.4 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases, cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produce a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family K or as the glycosyl hydrolases family 45 []. The best conserved regions in these enzymes is located in the N-terminal section. It contains an aspartic acid residue which has been shown [] to act as a nucleophile in the catalytic mechanism. This also has several cysteines that are involved in forming disulphide bridges.; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1OA7_A 1OA9_A 1L8F_A 1HD5_A 4ENG_A 3ENG_A 2ENG_A.

>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT)

Probab=90.00  E-value=0.49  Score=38.03  Aligned_cols=50  Identities=14%  Similarity=0.333  Sum_probs=33.4

Q ss_pred             Ccc-ceeEEEEEecCCcceEEcccccCc-------------eeccC--CC-CCCCeeEEEEEEecCC
Q 025808          171 GQN-DVLAVEIWQEDYQEWVAMRRAFGA-------------VFDIS--SP-PEGAISLRFQVSGSAG  220 (247)
Q Consensus       171 g~~-~I~sVev~~~~~~~W~~m~r~~g~-------------~W~~~--~~-~~gp~~lr~~vt~~~g  220 (247)
                      |.+ +|++|||+.+++.+|++.+.....             .|+..  -+ ++|...|.+|-++.+|
T Consensus        38 g~g~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~g~~~~aW~~W~~~~~~~~~~G~~~i~~RA~D~~G  104 (131)
T PF03404_consen   38 GGGRGIARVEVSTDGGKTWQEATLDGPESPPRYGEARWAWRLWEYDWPPPSLPGEYTIMVRATDESG  104 (131)
T ss_dssp             STT--EEEEEEESSTTSSEEE-EEESTSCCCHHTS-TTS-EEEEEEEEECSHCCEEEEEEEEEETTS
T ss_pred             CCCcceEEEEEEeCCCCCcEEeEeccCCCcccccccCcccceeeeccCcCccccceEEEEEEeeccc
Confidence            345 899999999999999976643211             35432  22 2578888888888777

MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....

>cd02110 SO_family_Moco_dimer Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain

Probab=85.55  E-value=1.6  Score=40.23  Aligned_cols=50  Identities=20%  Similarity=0.339  Sum_probs=36.4

Q ss_pred             CccceeEEEEEecCCcceEEcccccC----c---eeccC-CCCCCCeeEEEEEEecCC
Q 025808          171 GQNDVLAVEIWQEDYQEWVAMRRAFG----A---VFDIS-SPPEGAISLRFQVSGSAG  220 (247)
Q Consensus       171 g~~~I~sVev~~~~~~~W~~m~r~~g----~---~W~~~-~~~~gp~~lr~~vt~~~g  220 (247)
                      |...|++|||+.+++.+|++..-...    -   .|+.. .+.+|...|.+|.++..|
T Consensus       234 g~~~I~rVEvS~DgG~tW~~A~l~~~~~~~~~W~~W~~~~~~~~G~~~l~vRA~D~~g  291 (317)
T cd02110         234 GGRGIRRVEVSLDGGRTWQEARLEGPLAGPRAWRQWELDWDLPPGEYELVARATDSTG  291 (317)
T ss_pred             CCCCEEEEEEEeCCCCcceEeEccCCcCCCCEEEEEEEEEEcCCCcEEEEEEEECCCC
Confidence            34679999999999899997654321    1   44443 334788899999998877

This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	247
1n10_A	241	Crystal Structure Of Phl P 1, A Major Timothy Grass		2e-26
2hcz_X	245	Crystal Structure Of Expb1 (Zea M 1), A Beta-Expans		3e-25

>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen Allergen Length = 241

Iteration: 1
 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 118/224 (52%), Gaps = 12/224 (5%)
Query: 28  SRATYYGSPDSLGTPT--GACGFGEYGRT-VNDANVAGVSRLWKNGTGCGACYQVRCKVP 84
           +++T+YG P   G     GACG+ +  +   +     G + ++K+G GCG+C++++C  P
Sbjct: 22  AKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTKP 81
Query: 85  QLCXXXXXXXXXXXXXXX--XKTDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCW 142
           + C                     F LS  A+G MA      +L S G + ++FRRV C 
Sbjct: 82  EACSGEPVVVHITDDNEEPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCK 141
Query: 143 Y-KGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDI 201
           Y +G  + F V + S  P+YLA+ + YV G  DV+AV+I ++   +W+ ++ ++GA++ I
Sbjct: 142 YPEGTKVTFHVEKGSN-PNYLALLVKYVNGDGDVVAVDIKEKGKDKWIELKESWGAIWRI 200
Query: 202 SSPPE--GAISLRFQVSGSAGLTWVVANNAIPSDWKAGVAYESE 243
            +P +  G  ++R+   G    T   A + IP  WKA  +YES+
Sbjct: 201 DTPDKLTGPFTVRYTTEGG---TKTEAEDVIPEGWKADTSYESK 241

>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And Group-1 Pollen Allergen From Maize Length = 245

Iteration: 1
 Score =  111 bits (278), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 117/231 (50%), Gaps = 20/231 (8%)
Query: 28  SRATYYGSPDSLGTPT--GACGFGEYGRTVNDANVAGVSR-----LWKNGTGCGACYQVR 80
           +RAT+YG P+  G P   GACG     + VN    +G++      ++K+G GCG+CY+VR
Sbjct: 22  ARATWYGQPNGAGAPDNGGACGI----KNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVR 77
Query: 81  CKVPQLCXXXXXXX--XXXXXXXXXKTDFILSPRAYGRMALPDKSAELYSYGVVNVEFRR 138
           CK    C                     F LS +A+G +A P  + ++   G+++VEFRR
Sbjct: 78  CKEKPECSGNPVTVYITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRR 137
Query: 139 VPCWYK-GYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGA 197
           V C Y  G  + F + +    P+YLA+ + YVA   D++ +EI  +   EW  M+ ++GA
Sbjct: 138 VRCKYPAGQKIVFHIEKGCN-PNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWGA 196
Query: 198 V--FDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAGVAYESEIQL 246
           +   D +   +G  S+R     S     V+A + IP++W+    Y S +Q 
Sbjct: 197 IWRMDTAKALKGPFSIRLT---SESGKKVIAKDVIPANWRPDAVYTSNVQF 244

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	247
1n10_A	241	PHL P I, pollen allergen PHL P 1; plant allergen,	9e-57
2hcz_X	245	Beta-expansin 1A; domain 1 is A beta barrel and do	1e-56
3d30_A	208	YOAJ, expansin like protein; peptidoglycan associa	8e-32
3ft1_A	100	PHL P 3 allergen; beta-barrel; 1.79A {Phleum prate	3e-26
2jnz_A	108	PHL P 3 allergen; timothy grass pollen; NMR {Phleu	5e-25
1bmw_A	96	PHL P II, pollen allergen PHL P2; allergy, immunog	6e-21
1wc2_A	181	Endoglucanase; hydrolase, cellulase, cellulose, do	6e-05

>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3 Length = 241

 Score =  180 bits (457), Expect = 9e-57
 Identities = 67/222 (30%), Positives = 112/222 (50%), Gaps = 6/222 (2%)

Query: 26  TYSRATYYGSPDSLGTPT--GACGFGEYGRTVNDANVAGVSR-LWKNGTGCGACYQVRCK 82
             +++T+YG P   G     GACG+ +  +          +  ++K+G GCG+C++++C 
Sbjct: 20  LDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCT 79

Query: 83  VPQLCTDYGVYVVVTD--YGEGDKTDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVP 140
            P+ C+   V V +TD          F LS  A+G MA      +L S G + ++FRRV 
Sbjct: 80  KPEACSGEPVVVHITDDNEEPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVK 139

Query: 141 CWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFD 200
           C Y          E    P+YLA+ + YV G  DV+AV+I ++   +W+ ++ ++GA++ 
Sbjct: 140 CKYPEGTKVTFHVEKGSNPNYLALLVKYVNGDGDVVAVDIKEKGKDKWIELKESWGAIWR 199

Query: 201 ISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAGVAYES 242
           I +P +       + +   G T   A + IP  WKA  +YES
Sbjct: 200 IDTPDKLTGPFTVRYTTEGG-TKTEAEDVIPEGWKADTSYES 240

>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays} Length = 245

 Score =  180 bits (457), Expect = 1e-56
 Identities = 71/225 (31%), Positives = 115/225 (51%), Gaps = 6/225 (2%)

Query: 26  TYSRATYYGSPDSLGTPT--GACGFGEYGRTVNDANVAGVSR-LWKNGTGCGACYQVRCK 82
             +RAT+YG P+  G P   GACG             A  +  ++K+G GCG+CY+VRCK
Sbjct: 20  LTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCK 79

Query: 83  VPQLCTDYGVYVVVTD--YGEGDKTDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVP 140
               C+   V V +TD  Y       F LS +A+G +A P  + ++   G+++VEFRRV 
Sbjct: 80  EKPECSGNPVTVYITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVR 139

Query: 141 CWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFD 200
           C Y          E    P+YLA+ + YVA   D++ +EI  +   EW  M+ ++GA++ 
Sbjct: 140 CKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWR 199

Query: 201 ISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAGVAYESEIQ 245
           + +          +++  +G   V+A + IP++W+    Y S +Q
Sbjct: 200 MDTAKALKGPFSIRLTSESG-KKVIAKDVIPANWRPDAVYTSNVQ 243

>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A Length = 208

 Score =  114 bits (288), Expect = 8e-32
 Identities = 44/230 (19%), Positives = 78/230 (33%), Gaps = 34/230 (14%)

Query: 23  YTSTYS-RATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVSRLWKNGT----GCGACY 77
           Y   +   ATY GS    G   GA         +     A        G       G+  
Sbjct: 3   YDDLHEGYATYTGS----GYSGGAFLLDPIPSDME--ITAINPADLNYGGVKAALAGSYL 56

Query: 78  QVRCKVPQLCTDYGVYVVVTD-YGEGDKTDFILSPRAYGRMALPDKSAELYSYGVVNVEF 136
           +V     +        V VTD Y EG +    LSP A+ ++            G +N+++
Sbjct: 57  EVEGPKGK------TTVYVTDLYPEGARGALDLSPNAFRKIGNMKD-------GKINIKW 103

Query: 137 RRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFG 196
           R V     G N  +++ E S    + AI +        V+ +E  ++   +W+ M +   
Sbjct: 104 RVVKAPITG-NFTYRIKEGSS-RWWAAIQVRNHKY--PVMKMEYEKDG--KWINMEKMDY 157

Query: 197 AVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPS-DWKAGVAYESEIQ 245
             F  ++   G++ +R  ++   G         +P             +Q
Sbjct: 158 NHFVSTNLGTGSLKVR--MTDIRGKVVKDTIPKLPESGTSKAYTVPGHVQ 205

>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} PDB: 3ft9_A Length = 100

 Score = 97.2 bits (242), Expect = 3e-26
 Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 7/103 (6%)

Query: 145 GYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISS- 203
              + F V + S  P  L + I Y    + +  VE+ Q   +EW  + +  G V+++ S 
Sbjct: 1   AVQVTFTVQKGSD-PKKLVLDIKYTRPGDSLAEVELRQHGSEEWEPLTKK-GNVWEVKSS 58

Query: 204 -PPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAGVAYESEIQ 245
            P  G  + RF   G       V +  IP+ +  G  Y+ E Q
Sbjct: 59  KPLVGPFNFRFMSKGG---MRNVFDEVIPTAFSIGKTYKPEEQ 98

>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense} Length = 108

 Score = 94.5 bits (235), Expect = 5e-25
 Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 11/113 (9%)

Query: 133 NVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMR 192
           +              + F V + S  P  L + I Y    + +  VE+ Q   +EW  + 
Sbjct: 4   HHHHHHGSA----VQVTFTVQKGSD-PKKLVLDIKYTRPGDSLAEVELRQHGSEEWEPLT 58

Query: 193 RAFGAVFDISS--PPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAGVAYESE 243
           +  G V+++ S  P  G  + RF   G       V +  IP+ +  G  Y+ E
Sbjct: 59  KK-GNVWEVKSSKPLVGPFNFRFMSKGG---MRNVFDEVIPTAFSIGKTYKPE 107

>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A Length = 96

 Score = 83.4 bits (206), Expect = 6e-21
 Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 8/99 (8%)

Query: 147 NLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISS--P 204
            + F V + S    +LA+ + Y      +  VE+ +    EWVAM +  G V+   S  P
Sbjct: 3   KVTFTVEKGSN-EKHLAVLVKYEGD--TMAEVELREHGSDEWVAMTKGEGGVWTFDSEEP 59

Query: 205 PEGAISLRFQVSGSAGLTWVVANNAIPSDWKAGVAYESE 243
            +G  + RF           V ++ +P  +  G  Y  E
Sbjct: 60  LQGPFNFRFLTEKG---MKNVFDDVVPEKYTIGATYAPE 95

>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1 Length = 181

 Score = 41.5 bits (96), Expect = 6e-05
 Identities = 24/171 (14%), Positives = 43/171 (25%), Gaps = 38/171 (22%)

Query: 20  YSHYTSTYSRATYYGSPDSLGTPTGACGFGE------YGRTVNDANVAGVSRLWKN---- 69
             +   + +  T Y          GACG G       +G        A     + +    
Sbjct: 9   RRYNGKSCASTTNYHDSHK-----GACGCGPASGDAQFGWNAGSFVAAASQMYFDSGNKG 63

Query: 70  --GTGCGACYQVRCKVPQLCTDYG-------VYVVVTD-----YGEG---DKTDFILSPR 112
             G  CG C ++      +    G          ++T+     Y      ++        
Sbjct: 64  WCGQHCGQCIKLTTTGGYVPGQGGPVREGLSKTFMITNLCPNIYPNQDWCNQGSQYGGHN 123

Query: 113 AYGR-----MALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRY 158
            YG      +           +      +  V C  +  N   +   NS Y
Sbjct: 124 KYGYELHLDLENGRSQVTGMGWNNPETTWEVVNCDSEH-NHDHRTPSNSMY 173

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	247
2hcz_X	245	Beta-expansin 1A; domain 1 is A beta barrel and do	100.0
1n10_A	241	PHL P I, pollen allergen PHL P 1; plant allergen,	100.0
3d30_A	208	YOAJ, expansin like protein; peptidoglycan associa	100.0
3ft1_A	100	PHL P 3 allergen; beta-barrel; 1.79A {Phleum prate	99.96
1wc2_A	181	Endoglucanase; hydrolase, cellulase, cellulose, do	99.95
2jnz_A	108	PHL P 3 allergen; timothy grass pollen; NMR {Phleu	99.95
1bmw_A	96	PHL P II, pollen allergen PHL P2; allergy, immunog	99.92
1bw3_A	125	Barwin, basic barley SEED protein; lectin; NMR {Ho	99.68
4avr_A	95	PA4485; unknown function, GRAM-negative bacteria,	99.3
3sul_A	122	Cerato-platanin-like protein; double PSI beta barr	98.3
3suk_A	125	Cerato-platanin-like protein; double PSI beta barr	98.14
3m3g_A	120	EPL1 protein; fungal, plant defense, fungus, polys	98.12
2kqa_A	129	Cerato-platanin; elicitor, secreted, toxin; NMR {C	98.11
3suj_A	127	Cerato-platanin 1; double PSI beta barrel, unknown	98.1
3sum_A	136	Cerato-platanin-like protein; double PSI beta barr	97.75
2eng_A	210	Endoglucanase V; cellulose degradation, hydrolase	94.15

>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays}

Probab=100.00  E-value=3e-67  Score=461.70  Aligned_cols=224  Identities=32%  Similarity=0.651  Sum_probs=204.6

Q ss_pred             ccCCCCceeeEEEEECCCCCCCC--CCcccCCCCCCCCCCCceEEEec-hhccCCCCCCceEEEEECCCCcccCCcEEEE
Q 025808           19 CYSHYTSTYSRATYYGSPDSLGT--PTGACGFGEYGRTVNDANVAGVS-RLWKNGTGCGACYQVRCKVPQLCTDYGVYVV   95 (247)
Q Consensus        19 ~~~~~~~~~g~aT~Y~~~~~~g~--~~GaCGy~~~~~~~~~~~~aA~s-~~~~~g~~CG~C~~V~c~~~~~C~~~sv~V~   95 (247)
                      ..++++|+.|+||||+.+++.|+  ++|||||++++..|++.++||+| ++|++|++||+||||+|.+++.|.+++|+|+
T Consensus        13 ~~~~~~w~~g~AT~Yg~~~~~gt~~~gGACGyg~~~~~p~~~~~aAls~~lf~~G~~CG~Cy~V~c~~~~~C~~~sv~V~   92 (245)
T 2hcz_X           13 TNYNGKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPECSGNPVTVY   92 (245)
T ss_dssp             SCCCCCCEEEEEEECSCTTSCSSTTSCCTTCCCCTTSTTTTTCEEEECHHHHGGGTSTTCEEEEECCSSSSBCSSCEEEE
T ss_pred             cccCCceeeeEEEEeCCCCCCCcCCCCccCCCCCCCcCCCCCEEEEeCHHHcCCchhcCCeEEEEeCCCCccCCCCEEEE
Confidence            34578999999999999988887  78999999988888899999999 9999999999999999988888999999999


Q ss_pred             EeeCCCC--CCCceeeCHHHHhcccCCCcccccccCcEEEEEEEEEeeCCCC-cceEEEEecCCCCCcEEEEEEEEecCc
Q 025808           96 VTDYGEG--DKTDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKG-YNLQFKVHENSRYPHYLAIAILYVAGQ  172 (247)
Q Consensus        96 VtD~Cp~--~~~~~DLS~~AF~~ia~~~~~~~~~~~G~v~I~~r~V~C~~~g-~ni~~~v~~gS~~~~w~a~~v~n~~g~  172 (247)
                      |||+||.  ++.|||||+.||++||++++++++++.|+|+|+||||+|+++| .||+|+|+++| ++||++|+|.|++|.
T Consensus        93 VtD~C~C~~~~~hfDLS~~AF~~iA~~g~~~~L~~~Gii~V~yrrV~C~~~gg~ni~f~v~~Gs-~~~~~avlv~n~~g~  171 (245)
T 2hcz_X           93 ITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGC-NPNYLAVLVKYVADD  171 (245)
T ss_dssp             EEEECCCTTSSSEEEECHHHHHHTBCTTCHHHHTTTCCEEEEEEEECCCCSTTCCCEEEECCCC-SSSCCCEEEECCCTT
T ss_pred             EEeccCCCCCCccEEcCHHHHHHHhccccccccccCCEEEEEEEEEecCCCCCCcEEEEEcCCC-CcceEEEEEEecCCC
Confidence            9999986  4689999999999999987777778999999999999999983 48999999999 899999999999999


Q ss_pred             cceeEEEEEecCCcceEEcccccCceeccCCC--CCCCeeEEEEEEecCCCEEEEEecccCCCCCCCcEEecCCCC
Q 025808          173 NDVLAVEIWQEDYQEWVAMRRAFGAVFDISSP--PEGAISLRFQVSGSAGLTWVVANNAIPSDWKAGVAYESEIQL  246 (247)
Q Consensus       173 ~~I~sVev~~~~~~~W~~m~r~~g~~W~~~~~--~~gp~~lr~~vt~~~g~~~iv~~~vip~~w~~g~~y~t~~qf  246 (247)
                      ++|++|||+++++..|++|+|+|||+|+.++.  +.+||+|||  |+.+| |+|+++||||++|++|++|++++||
T Consensus       172 g~V~~V~ik~~~~~~W~~m~r~~G~~W~~~~~~~l~gpls~Rv--T~~~G-~~v~~~nViP~~w~~g~ty~~~~qf  244 (245)
T 2hcz_X          172 GDIVLMEIQDKLSAEWKPMKLSWGAIWRMDTAKALKGPFSIRL--TSESG-KKVIAKDVIPANWRPDAVYTSNVQF  244 (245)
T ss_dssp             CCEEEEEBCCSSSCSCBCCEEEETTEEECSCCSSCCSSCCEEE--EETTS-CEEEESCSCCSSCCTTCEEECSCCC
T ss_pred             CCEEEEEEEeCCCCceeECccCCCCEEEECCCCCCCCCEEEEE--EEeCC-cEEEEeeeecCCCCCCCEEeCcccc
Confidence            99999999987777999999999999998764  678866655  55678 9999999999999999999999999

>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3

Probab=100.00  E-value=3.4e-66  Score=453.84  Aligned_cols=221  Identities=33%  Similarity=0.657  Sum_probs=193.2

Q ss_pred             ccCCCCceeeEEEEECCCCCCCC--CCcccCCCCCCCCCCCceEEEec-hhccCCCCCCceEEEEECCCCcccCCcEEEE
Q 025808           19 CYSHYTSTYSRATYYGSPDSLGT--PTGACGFGEYGRTVNDANVAGVS-RLWKNGTGCGACYQVRCKVPQLCTDYGVYVV   95 (247)
Q Consensus        19 ~~~~~~~~~g~aT~Y~~~~~~g~--~~GaCGy~~~~~~~~~~~~aA~s-~~~~~g~~CG~C~~V~c~~~~~C~~~sv~V~   95 (247)
                      ..++++|+.|+||||+++++.|+  ++|||||++++..+++.++||+| ++|++|++||+||||+|.+++.|.+++|+|+
T Consensus        13 ~~~~~~w~~g~AT~Yg~~~~~gt~~~gGACGyg~~~~~~~g~~~aAls~~lf~~G~~CG~CyeV~c~~~~~C~~~~v~V~   92 (241)
T 1n10_A           13 ATYGDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTKPEACSGEPVVVH   92 (241)
T ss_dssp             CBCCCSCEEEEEEEEC----------CCTTCCCCTTSTTTTTCEEEECHHHHGGGTTSSCEEEEEECSSTTBCSCCEEEE
T ss_pred             CcccCCceeeEEEEeCCCCCCCcCCCCeeCCCCCcCcCCCCcEEEEeCHHHccCcccCCCeEEEEeCCCCccCCCCEEEE
Confidence            44578999999999999988887  79999999988888999999999 9999999999999999988778999999999


Q ss_pred             EeeCCCC--CCCceeeCHHHHhcccCCCcccccccCcEEEEEEEEEeeCCCC-cceEEEEecCCCCCcEEEEEEEEecCc
Q 025808           96 VTDYGEG--DKTDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKG-YNLQFKVHENSRYPHYLAIAILYVAGQ  172 (247)
Q Consensus        96 VtD~Cp~--~~~~~DLS~~AF~~ia~~~~~~~~~~~G~v~I~~r~V~C~~~g-~ni~~~v~~gS~~~~w~a~~v~n~~g~  172 (247)
                      |||+|+.  ++.|||||+.||.+||++++++++++.|+|+|+||||+|+++| .||+|+|+++| ++||++|+|.|++|.
T Consensus        93 VtD~C~C~~~~~hfDLS~~AF~~iA~~g~~~~L~~~Gii~V~yrrV~C~~~gg~~i~f~v~~Gs-~~~~~~vlv~n~~g~  171 (241)
T 1n10_A           93 ITDDNEEPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGS-NPNYLALLVKYVNGD  171 (241)
T ss_dssp             EEEECSSCSSSSEEEEEHHHHHTTBSTTCHHHHHTTCSEEEEEEECCCCCCTTCCCEEEECTTC-BTTEEEEEEECCCCS
T ss_pred             EeEecCCCCCCcceecCHHHHHHhhccCcccccccCCEEEEEEEEEeCCCCCCCceEEEEcCCC-CcceEEEEEEecCCC
Confidence            9999864  5689999999999999987777778999999999999999984 68999999999 899999999999999


Q ss_pred             cceeEEEEEecCCcceEEcccccCceeccCCC--CCCCeeEEEEEEecCCCEEEEEecccCCCCCCCcEEecC
Q 025808          173 NDVLAVEIWQEDYQEWVAMRRAFGAVFDISSP--PEGAISLRFQVSGSAGLTWVVANNAIPSDWKAGVAYESE  243 (247)
Q Consensus       173 ~~I~sVev~~~~~~~W~~m~r~~g~~W~~~~~--~~gp~~lr~~vt~~~g~~~iv~~~vip~~w~~g~~y~t~  243 (247)
                      ++|++|||+++++..|++|+|+|||+|+.++.  +.+||+||  ||+.+| |+|+++||||++|++|++|+++
T Consensus       172 g~V~~V~ik~~~~~~W~~m~r~wG~~W~~~~~~~l~gpls~R--vT~~~G-~~v~~~nViP~~w~~g~ty~~~  241 (241)
T 1n10_A          172 GDVVAVDIKEKGKDKWIELKESWGAIWRIDTPDKLTGPFTVR--YTTEGG-TKTEAEDVIPEGWKADTSYESK  241 (241)
T ss_dssp             SCEEEEEEEETTCCCCEECBCCTTTCEEEECSSCCCSCEEEE--EEESSS-CEEEEEEEECSSCCSSEEEEC-
T ss_pred             CCEEEEEEEeCCCCCeEECccCcCcEEEeCCCCCCCCCEEEE--EEEeCC-cEEEEccccCCCCCCCCEEeCC
Confidence            99999999988778999999999999997654  67875555  556678 9999999999999999999974

>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A

Probab=100.00  E-value=3.1e-54  Score=371.15  Aligned_cols=194  Identities=21%  Similarity=0.271  Sum_probs=171.3

Q ss_pred             CCceeeEEEEECCCCCCCCCCcccCCCCCCCCCCCceEEEec-hhccCC----CCCCceEEEEECCCCcccCCcEEEEEe
Q 025808           23 YTSTYSRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVS-RLWKNG----TGCGACYQVRCKVPQLCTDYGVYVVVT   97 (247)
Q Consensus        23 ~~~~~g~aT~Y~~~~~~g~~~GaCGy~~~~~~~~~~~~aA~s-~~~~~g----~~CG~C~~V~c~~~~~C~~~sv~V~Vt   97 (247)
                      +..+.|+||||++..    .+||||+..   .+++.++||+| .+|++|    ..||+||||+|.      +++|+|+|+
T Consensus         4 ~~~~~G~aT~Y~~g~----~~GACG~~~---~~~~~~~aAls~~~f~~G~~~~~~CG~c~~v~~~------~gsv~V~v~   70 (208)
T 3d30_A            4 DDLHEGYATYTGSGY----SGGAFLLDP---IPSDMEITAINPADLNYGGVKAALAGSYLEVEGP------KGKTTVYVT   70 (208)
T ss_dssp             TCCEEEEEEECSTTS----SSCTTCCCC---CCTTCCEEEECHHHHTGGGCTTTTTTCEEEEEET------TEEEEEEEE
T ss_pred             CCcEEEEEEEcCCCC----CCCcCCCCC---CCCCCEEEEeCHHHhCCCCcCccccCCEEEEEeC------CCcEEEEEE
Confidence            457899999999863    589999864   35678999999 999988    899999999983      458999999


Q ss_pred             eCCCCCC-CceeeCHHHHhcccCCCcccccccCcEEEEEEEEEeeCCCCcceEEEEecCCCCCcEEEEEEEEecCcccee
Q 025808           98 DYGEGDK-TDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVL  176 (247)
Q Consensus        98 D~Cp~~~-~~~DLS~~AF~~ia~~~~~~~~~~~G~v~I~~r~V~C~~~g~ni~~~v~~gS~~~~w~a~~v~n~~g~~~I~  176 (247)
                      |+||+|. .|||||+.||++||.       ++.|+++|+||+|+|+++| +|+|++++|| ++||++|+|.|++|  +|+
T Consensus        71 D~CP~C~~~~~DLS~~aF~~la~-------~~~G~i~v~~~~V~C~~~G-~i~f~v~~Gs-~~~~~~v~v~n~~g--~v~  139 (208)
T 3d30_A           71 DLYPEGARGALDLSPNAFRKIGN-------MKDGKINIKWRVVKAPITG-NFTYRIKEGS-SRWWAAIQVRNHKY--PVM  139 (208)
T ss_dssp             EECTTCCTTCEEECHHHHHHHSC-------GGGSSEEEEEEEECCCCCS-CCEEEECTTC-SSSEEEEEEESCSS--CEE
T ss_pred             ECCCCCCCCeEECCHHHHHHhcc-------cCCCEEEEEEEEeCCCCCC-ceeEEEcCCC-CCceEEEEEEecCC--CEE
Confidence            9999985 899999999999994       4799999999999999999 9999999999 89999999999965  999


Q ss_pred             EEEEEecCCcceEEcccccCceeccCCCCCCCeeEEEEEEecCCCEEEEEecccCCCCCC----CcEEecCCCCC
Q 025808          177 AVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKA----GVAYESEIQLK  247 (247)
Q Consensus       177 sVev~~~~~~~W~~m~r~~g~~W~~~~~~~gp~~lr~~vt~~~g~~~iv~~~vip~~w~~----g~~y~t~~qf~  247 (247)
                      +|||+++  +.|++|+|+|+|+|..+.++.+||+|  |||+.+| ++|  .++||++|+.    +.+|++++|||
T Consensus       140 ~v~i~~~--~~W~~m~r~~~n~~~~~~~~~~pls~--rvT~~~G-~~v--~~vip~~w~~~~~~~~~~~~~~Qf~  207 (208)
T 3d30_A          140 KMEYEKD--GKWINMEKMDYNHFVSTNLGTGSLKV--RMTDIRG-KVV--KDTIPKLPESGTSKAYTVPGHVQFP  207 (208)
T ss_dssp             EEEEEET--TEEEEEEECTTSCEEEECCCSSSEEE--EEEETTC-CEE--EEEECCCCSSCCSSCEEEECCCCCC
T ss_pred             EEEEecC--CcEEEccccccceeecCCCCCCCEEE--EEEECCC-CEE--EEEECCCCccCcccceEEeCcCccC
Confidence            9999975  58999999999988776667777555  5566788 777  7999999997    89999999997

>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} SCOP: b.7.3.0 PDB: 3ft9_A

Probab=99.96  E-value=4e-29  Score=190.99  Aligned_cols=96  Identities=28%  Similarity=0.526  Sum_probs=87.5

Q ss_pred             cceEEEEecCCCCCcEEEEEEEEecCccceeEEEEEecCCcceEEcccccCceeccCC--CCCCCeeEEEEEEecCCCEE
Q 025808          146 YNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISS--PPEGAISLRFQVSGSAGLTW  223 (247)
Q Consensus       146 ~ni~~~v~~gS~~~~w~a~~v~n~~g~~~I~sVev~~~~~~~W~~m~r~~g~~W~~~~--~~~gp~~lr~~vt~~~g~~~  223 (247)
                      ++|+|+|+++| ++||++++|.|++|.+||.+|||+++++..|++|+| ||++|+.++  ++.|||++||+  +.+| ++
T Consensus         2 ~~i~F~V~~gs-~~~~l~vlv~nv~G~gdI~~V~ik~s~t~~W~~M~r-wGa~W~~~s~~~l~GplSfRvt--~~~G-~~   76 (100)
T 3ft1_A            2 VQVTFTVQKGS-DPKKLVLDIKYTRPGDSLAEVELRQHGSEEWEPLTK-KGNVWEVKSSKPLVGPFNFRFM--SKGG-MR   76 (100)
T ss_dssp             BEEEEEECTTC-BTTEEEEEEEEECTTCCEEEEEEECTTCCCCEECEE-ETTEEEEECSSCCCSSEEEEEE--ETTC-CE
T ss_pred             CCEEEEEecCC-CcceEEEEEEEcCCCccEEEEEEEeCCCCCeEEecc-cCCEeEeCCCCCCCCCEEEEEE--EcCC-cE
Confidence            48999999999 899999999999999999999999887778999999 999999865  78998777665  4577 99


Q ss_pred             EEEecccCCCCCCCcEEecCCCC
Q 025808          224 VVANNAIPSDWKAGVAYESEIQL  246 (247)
Q Consensus       224 iv~~~vip~~w~~g~~y~t~~qf  246 (247)
                      ++++||||++|++|++|++++||
T Consensus        77 ~v~~nViPa~W~~G~ty~s~vq~   99 (100)
T 3ft1_A           77 NVFDEVIPTAFSIGKTYKPEEQE   99 (100)
T ss_dssp             EEEEEEECTTCCTTCEECCCCBC
T ss_pred             EEECeEeCCCCCCCcEEeccccc
Confidence            99999999999999999999998

>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1

Probab=99.95  E-value=1.3e-28  Score=204.14  Aligned_cols=110  Identities=16%  Similarity=0.230  Sum_probs=92.2

Q ss_pred             CCceeeEEEEECCCCCCCCCCcccCCC-----CCCCCCCCceEEEec-hhccCC------CCCCceEEEEECCCC-----
Q 025808           23 YTSTYSRATYYGSPDSLGTPTGACGFG-----EYGRTVNDANVAGVS-RLWKNG------TGCGACYQVRCKVPQ-----   85 (247)
Q Consensus        23 ~~~~~g~aT~Y~~~~~~g~~~GaCGy~-----~~~~~~~~~~~aA~s-~~~~~g------~~CG~C~~V~c~~~~-----   85 (247)
                      ..|..++||||+..     ++|||||+     ++.+++++.++|||| +||++|      +.||+||||+|.+..     
T Consensus        12 ~g~~~A~aT~Yg~~-----~gGACGyG~~~~~~l~~~gyg~~tAALStaLFn~G~~~w~G~~CG~Cyel~c~~~~c~~cg   86 (181)
T 1wc2_A           12 NGKSCASTTNYHDS-----HKGACGCGPASGDAQFGWNAGSFVAAASQMYFDSGNKGWCGQHCGQCIKLTTTGGYVPGQG   86 (181)
T ss_dssp             TTEEEEEEEEECCC-----BCTTTTCSCSSSSBCCSSGGGSCEEEEEHHHHCTTCCSSSCTTTTCEEEEEEEEEECTTSC
T ss_pred             CCccccceeEecCC-----CCcccCcCcCCCCCccccCCcceeeecCHHHhCCCccccccccCCCcEEEEcCCCCccccc
Confidence            46999999999986     58999999     455556789999999 999997      899999999997632     


Q ss_pred             -ccc-CCcEEEEEeeCCCC-------C--------------CCceeeCHHHHhcccCCCcccccccCcEEEEEEEEEeeC
Q 025808           86 -LCT-DYGVYVVVTDYGEG-------D--------------KTDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCW  142 (247)
Q Consensus        86 -~C~-~~sv~V~VtD~Cp~-------~--------------~~~~DLS~~AF~~ia~~~~~~~~~~~G~v~I~~r~V~C~  142 (247)
                       +|. +++|+|||||+||.       |              +.||||+..| .+|+       ....|+++|+||||+|+
T Consensus        87 ~~~~~g~SI~VtaTN~CPpn~~nggWCn~pp~~~~~n~~G~~~HFDLs~pa-~~Ia-------~~~~GivpV~yrrV~C~  158 (181)
T 1wc2_A           87 GPVREGLSKTFMITNLCPNIYPNQDWCNQGSQYGGHNKYGYELHLDLENGR-SQVT-------GMGWNNPETTWEVVNCD  158 (181)
T ss_dssp             CCCCTTCEEEEEEEEEECSSTTSTTTSCCSSSSSCCCTTSCSEEEEEECTT-STTG-------GGTCSSEEEEEEEECHH
T ss_pred             ccCCCCCeEEEEEecCCCCCCCCCCccCCCcccCcccccCccccccccchH-HHhh-------hhcCCCceeEEEEEeCC
Confidence             233 45899999999992       3              4699999999 8898       35789999999999998


Q ss_pred             CCC
Q 025808          143 YKG  145 (247)
Q Consensus       143 ~~g  145 (247)
                      ..+
T Consensus       159 ~~~  161 (181)
T 1wc2_A          159 SEH  161 (181)
T ss_dssp             HHH
T ss_pred             CCC
Confidence            744

>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense}

Probab=99.95  E-value=3.4e-27  Score=182.23  Aligned_cols=96  Identities=27%  Similarity=0.538  Sum_probs=86.7

Q ss_pred             CCcceEEEEecCCCCCcEEEEEEEEecCccceeEEEEEecCCcceEEcccccCceeccCC--CCCCCeeEEEEEEecCCC
Q 025808          144 KGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISS--PPEGAISLRFQVSGSAGL  221 (247)
Q Consensus       144 ~g~ni~~~v~~gS~~~~w~a~~v~n~~g~~~I~sVev~~~~~~~W~~m~r~~g~~W~~~~--~~~gp~~lr~~vt~~~g~  221 (247)
                      .|+||.|+|+++| ++||++|+|.|++|.++|++|||++.++..|++|+|+ |++|+.++  +|.|||+|||+  +.+| 
T Consensus        11 ~g~~v~f~V~~~s-np~~l~VlV~nv~G~GdI~~V~Ik~~~~~~W~~M~rn-Ga~W~~~s~~~L~GplSfRvt--ts~G-   85 (108)
T 2jnz_A           11 SAVQVTFTVQKGS-DPKKLVLDIKYTRPGDSLAEVELRQHGSEEWEPLTKK-GNVWEVKSSKPLVGPFNFRFM--SKGG-   85 (108)
T ss_dssp             CCCEEEEEECTTC-CSSEEEEEEEEEBTTBCEEEEEEECTTCCCCEECEEE-TTEEEEECSSCCCSSEEEEEE--ETTT-
T ss_pred             CCccEEEEEecCC-CccEEEEEEEEeCCCCCEEEEEEEeCCCCcEeEcccc-CCEeEeCCCCCCCCCEEEEEE--EcCC-
Confidence            4579999999999 8999999999999999999999998677889999999 99999875  78998777665  4567 


Q ss_pred             EEEEEecccCCCCCCCcEEecCC
Q 025808          222 TWVVANNAIPSDWKAGVAYESEI  244 (247)
Q Consensus       222 ~~iv~~~vip~~w~~g~~y~t~~  244 (247)
                      ++++++||||++|++|++|++++
T Consensus        86 ~~~va~nViPa~W~~Gqty~s~v  108 (108)
T 2jnz_A           86 MRNVFDEVIPTAFSIGKTYKPEE  108 (108)
T ss_dssp             EEEEEEEEECSSCCTTCEECCCC
T ss_pred             cEEEECeEECCCCCCCCEEeCCC
Confidence            99999999999999999999864

>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A

Probab=99.92  E-value=3e-27  Score=179.54  Aligned_cols=93  Identities=28%  Similarity=0.531  Sum_probs=82.5

Q ss_pred             cceEEEEecCCCCCcEEEEEEEEecCccceeEEEEEecCCcceEEcccccCceeccCC--CCCCCeeEEEEEEecCCCEE
Q 025808          146 YNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISS--PPEGAISLRFQVSGSAGLTW  223 (247)
Q Consensus       146 ~ni~~~v~~gS~~~~w~a~~v~n~~g~~~I~sVev~~~~~~~W~~m~r~~g~~W~~~~--~~~gp~~lr~~vt~~~g~~~  223 (247)
                      ++|+|+|+++| ++||++++|.|++  ++|++|||++.++..|++|+|+||++|+.++  ++.|||++||+.  .+| ++
T Consensus         2 ~~i~F~V~~gs-~~~~l~vlv~nv~--gdI~~V~ik~~~~~~W~~M~r~wGa~W~~~~~~~L~GplSfRvt~--~~G-~~   75 (96)
T 1bmw_A            2 PKVTFTVEKGS-NEKHLAVLVKYEG--DTMAEVELREHGSDEWVAMTKGEGGVWTFDSEEPLQGPFNFRFLT--EKG-MK   75 (96)
T ss_dssp             CCCCCCCCTTC-SSSBCCBCCCCSS--SCCCCCEECCSSSSSCEECBCCSSSSBBCBCCSSCCCCCCBCCEE--TTT-EE
T ss_pred             CCEEEEEecCC-CCceEEEEEEEeC--CCEEEEEEEECCCCcEEECccCcCceeEeCCCCCCCCCEEEEEEE--cCC-cE
Confidence            48999999999 8999999999997  8999999998677899999999999999876  578998877764  467 99


Q ss_pred             EEEecccCCCCCCCcEEecCC
Q 025808          224 VVANNAIPSDWKAGVAYESEI  244 (247)
Q Consensus       224 iv~~~vip~~w~~g~~y~t~~  244 (247)
                      ++++||||++|++|++|++++
T Consensus        76 ~v~~nViP~~W~~G~ty~~~~   96 (96)
T 1bmw_A           76 NVFDDVVPEKYTIGATYAPEE   96 (96)
T ss_dssp             CCBSSCSCSSCCSSSCCCC--
T ss_pred             EEEeeEeCCCCCCCCEEeCCC
Confidence            999999999999999999863

>1bw3_A Barwin, basic barley SEED protein; lectin; NMR {Hordeum vulgare} SCOP: b.52.1.2 PDB: 1bw4_A

Probab=99.68  E-value=1.8e-17  Score=130.65  Aligned_cols=91  Identities=15%  Similarity=0.262  Sum_probs=66.8

Q ss_pred             CCcccCCCCCCCCCC----CceEEEec-hhc-cCCCCCCceEEEEECCCCcccCCcEEEEEeeCCCCCCCceeeC-HHHH
Q 025808           42 PTGACGFGEYGRTVN----DANVAGVS-RLW-KNGTGCGACYQVRCKVPQLCTDYGVYVVVTDYGEGDKTDFILS-PRAY  114 (247)
Q Consensus        42 ~~GaCGy~~~~~~~~----~~~~aA~s-~~~-~~g~~CG~C~~V~c~~~~~C~~~sv~V~VtD~Cp~~~~~~DLS-~~AF  114 (247)
                      -.++|+--+.++ +.    .-.-.|+. ++. +++..||+|++|++..    ++++|+|+|+|+||.+  +|||| ++||
T Consensus        27 ~s~~C~t~da~~-~~~~~~~y~wtA~~g~~gp~~g~~CG~cv~Vtn~~----nGksV~V~VvD~CP~g--gLDLS~~~AF   99 (125)
T 1bw3_A           27 VSAYCATWDASK-PLSWRSKYGWTAFCGPAGPRGQAACGKCLRVTNPA----TGAQITARIVDQCANG--GLDLDWDTVF   99 (125)
T ss_dssp             TCCTTHHHHTTS-CHHHHHHSCCEESCSTTCCCSGGGTTCEEEEEETT----TTEEEEEEEEECCSSS--SCCSCSSSSH
T ss_pred             eeEeeecccCCC-ceeEecCCCceEeccCCCCCCCcccCCEEEeEeCC----CCCEEEEEEEEeCCCC--CCCCCCHHHH
Confidence            358898633221 11    01123444 444 6778999999999864    3689999999999985  59999 9999


Q ss_pred             hcccCCCcccccccCcEEEEEEEEEeeC
Q 025808          115 GRMALPDKSAELYSYGVVNVEFRRVPCW  142 (247)
Q Consensus       115 ~~ia~~~~~~~~~~~G~v~I~~r~V~C~  142 (247)
                      ++|+.++.   .++.|+++|+|++|+|+
T Consensus       100 ~~Ia~~g~---G~~~G~i~V~w~~V~C~  124 (125)
T 1bw3_A          100 TKIDTNGI---GYQQGHLNVNYQFVDCR  124 (125)
T ss_dssp             HHHCSSCH---HHHHSEEEEEEEEECCC
T ss_pred             HHHhccCC---cccCcEEEEEEEEEeCC
Confidence            99996421   25789999999999997

>4avr_A PA4485; unknown function, GRAM-negative bacteria, infectious disease structure-based inhibitor design; 1.08A {Pseudomonas aeruginosa PA01}

Probab=99.30  E-value=1.7e-11  Score=92.10  Aligned_cols=92  Identities=25%  Similarity=0.251  Sum_probs=72.2

Q ss_pred             eeeEEEEECCCCCCCCCCcccCCCCCCCCCCCceEEEechhccCCCCCCceEEEEECCCCcccCCcEEEEEeeCCCCCC-
Q 025808           26 TYSRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVSRLWKNGTGCGACYQVRCKVPQLCTDYGVYVVVTDYGEGDK-  104 (247)
Q Consensus        26 ~~g~aT~Y~~~~~~g~~~GaCGy~~~~~~~~~~~~aA~s~~~~~g~~CG~C~~V~c~~~~~C~~~sv~V~VtD~Cp~~~-  104 (247)
                      ..|.|+||+..-. | ...|||-.- +   ...++||...|     .||..++|+...    ++++|+|+|.|+||.+. 
T Consensus         2 ~~G~ASwYg~~f~-G-~~TA~Ge~~-~---~~~~tAAH~tl-----P~gt~vrVtNl~----nGksVvVrVnDRGP~~~g   66 (95)
T 4avr_A            2 DTGEASYYGSRHA-G-LRTASGERY-N---PNAMTAAHRTL-----PFGARVRVTNLD----NRRSVVVRINDRGPFRRG   66 (95)
T ss_dssp             EEEEEEECCGGGT-T-SBCTTSCBC-C---TTSCEEECSSS-----CTTCEEEEEETT----TCCEEEEEEEECCCCSTT
T ss_pred             CEEEEEEECCccC-C-CCCCCccCc-C---CCCCEEEcCCC-----CCCcEEEEEECC----CCcEEEEEEccCCCCCCC
Confidence            4799999997421 1 368887432 1   14578887643     689999999755    37899999999999876 


Q ss_pred             CceeeCHHHHhcccCCCcccccccCcEEEEEEEEE
Q 025808          105 TDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRV  139 (247)
Q Consensus       105 ~~~DLS~~AF~~ia~~~~~~~~~~~G~v~I~~r~V  139 (247)
                      ..+|||+.||++|+       .++.|+.+|+|+.+
T Consensus        67 riIDLS~aAa~~Lg-------~~~~G~~~V~ve~~   94 (95)
T 4avr_A           67 RIIDVSRKAAEGLG-------MIRSGVAPVRIESL   94 (95)
T ss_dssp             EEEEECHHHHHHHT-------CTTTSCEEEEEEEC
T ss_pred             CEEEeCHHHHHHhC-------CcCCCEEEEEEEEe
Confidence            57999999999999       45799999999876

>3sul_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.63A {Moniliophthora perniciosa}

Probab=98.30  E-value=1.7e-06  Score=67.56  Aligned_cols=69  Identities=26%  Similarity=0.435  Sum_probs=54.8

Q ss_pred             EEEec--hhccCCCCCCceEEEEECCCCcccCCcEEEEEeeCCCCCCCceeeCHHHHhcccCCCcccccccCcEEEEEEE
Q 025808           60 VAGVS--RLWKNGTGCGACYQVRCKVPQLCTDYGVYVVVTDYGEGDKTDFILSPRAYGRMALPDKSAELYSYGVVNVEFR  137 (247)
Q Consensus        60 ~aA~s--~~~~~g~~CG~C~~V~c~~~~~C~~~sv~V~VtD~Cp~~~~~~DLS~~AF~~ia~~~~~~~~~~~G~v~I~~r  137 (247)
                      |.+..  +-|++ ..||.|+|++-..    .+++|.|..+|.-++   .|+|+.+||+.|.+. +   ....|+|+++|+
T Consensus        46 IGg~~~V~gwnS-~~CGtC~~lty~~----~g~si~vlaID~a~~---Gfnis~~Amn~LT~G-~---a~~lG~V~a~~~  113 (122)
T 3sul_A           46 VGAVDTITGWNS-ESCGTCYQITWSG----TGKTIHVVGVDVAGN---GFNVGQRAMDDLTNG-Q---AVALGNIDVTAT  113 (122)
T ss_dssp             EEEETTCCSTTC-TTTTCEEEEEETT----TTEEEEEEEEEECSS---SEEECHHHHHHHHTS-C---HHHHSEEEEEEE
T ss_pred             cccccccccCCC-CCCCceEEEEEcC----CCcEEEEEEEecCCC---ceeehHHHHHHhcCC-c---ceecceEeEEEE
Confidence            65555  56766 9999999999642    367999999998754   499999999999853 2   224699999999


Q ss_pred             EEe
Q 025808          138 RVP  140 (247)
Q Consensus       138 ~V~  140 (247)
                      +|+
T Consensus       114 qV~  116 (122)
T 3sul_A          114 LVD  116 (122)
T ss_dssp             EEC
T ss_pred             EcC
Confidence            997

>3suk_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa}

Probab=98.14  E-value=3.9e-06  Score=65.83  Aligned_cols=73  Identities=16%  Similarity=0.373  Sum_probs=55.1

Q ss_pred             ceEEEec--hhccCCCCCCceEEEEECCCCcccCCcEEEEEeeCCCCCCCceeeCHHHHhcccCCCcccccccCcEEEEE
Q 025808           58 ANVAGVS--RLWKNGTGCGACYQVRCKVPQLCTDYGVYVVVTDYGEGDKTDFILSPRAYGRMALPDKSAELYSYGVVNVE  135 (247)
Q Consensus        58 ~~~aA~s--~~~~~g~~CG~C~~V~c~~~~~C~~~sv~V~VtD~Cp~~~~~~DLS~~AF~~ia~~~~~~~~~~~G~v~I~  135 (247)
                      -+|.+..  .-|++ ..||.|+|++-.++.  ..++|.|..+|.-++   .|+|+.+||+.|.+. .   ....|+|+++
T Consensus        45 P~IGg~~~i~gwnS-~~CGtC~~lty~g~~--~~~si~vlaID~a~~---Gfnis~~Amn~LT~G-~---a~~lG~V~~~  114 (125)
T 3suk_A           45 PHIGASSDIGGFNS-PACGNCYTISFTFQG--VTRSINLVAIDHAGN---GFNVAQAAMDELTNG-N---AVALGTIDVQ  114 (125)
T ss_dssp             TSEEEETTCCSTTC-TTTTCEEEEEEEETT--EEEEEEEEEEEECSS---SEEECHHHHHHHHTS-C---HHHHCEEEEE
T ss_pred             CeeccccccccCCC-CCCCeeEEEEEcCCC--cceEEEEEEEecCCC---ceeecHHHHHHhcCC-c---ccccceEeEE
Confidence            3466655  55654 899999999974331  237899999998753   499999999999863 2   2246999999


Q ss_pred             EEEEe
Q 025808          136 FRRVP  140 (247)
Q Consensus       136 ~r~V~  140 (247)
                      |++|+
T Consensus       115 ~~~V~  119 (125)
T 3suk_A          115 SQQVA  119 (125)
T ss_dssp             EEEEC
T ss_pred             EEEcC
Confidence            99997

>3m3g_A EPL1 protein; fungal, plant defense, fungus, polysaccharide-binding protei; 1.39A {Hypocrea virens}

Probab=98.12  E-value=5.7e-06  Score=64.46  Aligned_cols=69  Identities=20%  Similarity=0.501  Sum_probs=54.1

Q ss_pred             ceEEEec--hhccCCCCCCceEEEEECCCCcccCCcEEEEEeeCCCCCCCceeeCHHHHhcccCCCcccccccCcEEEEE
Q 025808           58 ANVAGVS--RLWKNGTGCGACYQVRCKVPQLCTDYGVYVVVTDYGEGDKTDFILSPRAYGRMALPDKSAELYSYGVVNVE  135 (247)
Q Consensus        58 ~~~aA~s--~~~~~g~~CG~C~~V~c~~~~~C~~~sv~V~VtD~Cp~~~~~~DLS~~AF~~ia~~~~~~~~~~~G~v~I~  135 (247)
                      -+|.+..  .-|+ ...||.|+|++-.      +++|.|+.+|.-+   ..|+|+.+||+.|.+. .+   ...|+|+++
T Consensus        44 P~IGg~~~i~gwn-s~~CGtC~~lty~------g~si~vlaID~a~---~Gfnis~~A~n~LT~G-~a---~~lG~V~a~  109 (120)
T 3m3g_A           44 PYIGGAAAVAGWN-SASCGTCWKLQYS------GHTIYVLAVDHAA---SGFNIALDAMNALTGG-QA---VQLGRVSAT  109 (120)
T ss_dssp             TSEEEETTCCSTT-CTTTTCEEEEEET------TEEEEEEEEEECS---SSEEECHHHHHHHHTS-CH---HHHCEEECE
T ss_pred             CccccccccccCC-CCCCCceEEEEEC------CeEEEEEEEecCC---CceeecHHHHHHhhCC-cc---eeeeeEeEE
Confidence            3466655  5565 4899999999963      5799999999874   4599999999999853 22   246999999


Q ss_pred             EEEEe
Q 025808          136 FRRVP  140 (247)
Q Consensus       136 ~r~V~  140 (247)
                      |++|+
T Consensus       110 ~~~V~  114 (120)
T 3m3g_A          110 ATQVP  114 (120)
T ss_dssp             EEEEC
T ss_pred             EEEcC
Confidence            99997

>2kqa_A Cerato-platanin; elicitor, secreted, toxin; NMR {Ceratocystis platani}

Probab=98.11  E-value=5.8e-06  Score=64.94  Aligned_cols=68  Identities=28%  Similarity=0.637  Sum_probs=56.0

Q ss_pred             ceEEEec--hhccCCCCCCceEEEEECCCCcccCCcEEEEEeeCCCCCCCceeeCHHHHhcccCCCcccccccCcEE-EE
Q 025808           58 ANVAGVS--RLWKNGTGCGACYQVRCKVPQLCTDYGVYVVVTDYGEGDKTDFILSPRAYGRMALPDKSAELYSYGVV-NV  134 (247)
Q Consensus        58 ~~~aA~s--~~~~~g~~CG~C~~V~c~~~~~C~~~sv~V~VtD~Cp~~~~~~DLS~~AF~~ia~~~~~~~~~~~G~v-~I  134 (247)
                      -+|.+..  +-|+ ...||.|++|+-.     .+++|.|+.+|.-++   .|+++.+||+.|.+.      ...|+| ++
T Consensus        50 P~IGga~~iagWN-S~~CGtC~~lty~-----ng~sI~vlaID~A~~---gFnIs~~Amn~LT~G------~~lG~V~~a  114 (129)
T 2kqa_A           50 PNVGGIPDIAGWD-SPSCGTCWKVTIP-----NGNSIFIRGVDSGRG---GFNVNPTAFTKLVGS------TEAGRVDNV  114 (129)
T ss_dssp             SSEEEETTCCSTT-CTTCSCEEEEEET-----TTEEEEEEEEEECSS---SEEECHHHHHHHHSS------SSSCCBCSC
T ss_pred             CeeccchhhccCC-CCCCCceEEEEEc-----CCCEEEEEEEccCCC---ceeehHHHHHHhcCC------cccCcEeEE
Confidence            4466666  5577 6999999999963     268999999998774   699999999999864      258999 99


Q ss_pred             EEEEEe
Q 025808          135 EFRRVP  140 (247)
Q Consensus       135 ~~r~V~  140 (247)
                      +|++|+
T Consensus       115 ~~~qV~  120 (129)
T 2kqa_A          115 NYVQVD  120 (129)
T ss_dssp             EEEECC
T ss_pred             EEEEcC
Confidence            999996

>3suj_A Cerato-platanin 1; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa}

Probab=98.10  E-value=6e-06  Score=64.92  Aligned_cols=74  Identities=27%  Similarity=0.500  Sum_probs=55.0

Q ss_pred             ceEEEec--hhccCCCCCCceEEEEECCCCcccCCcEEEEEeeCCCCCCCceeeCHHHHhcccCCCcccccccCcEEEEE
Q 025808           58 ANVAGVS--RLWKNGTGCGACYQVRCKVPQLCTDYGVYVVVTDYGEGDKTDFILSPRAYGRMALPDKSAELYSYGVVNVE  135 (247)
Q Consensus        58 ~~~aA~s--~~~~~g~~CG~C~~V~c~~~~~C~~~sv~V~VtD~Cp~~~~~~DLS~~AF~~ia~~~~~~~~~~~G~v~I~  135 (247)
                      -+|.+..  .-|+. ..||.|+|++-.++. -..++|.|+.+|.-++   .|+|+.+||+.|.+. .   ....|+|+++
T Consensus        44 P~IGg~~~i~gwns-~~CGtC~~lty~g~~-~~~~si~vlaID~a~~---Gfnis~~Amn~LT~g-~---a~~lG~V~~~  114 (127)
T 3suj_A           44 PCIGGSSDIAGYNS-PNCGSCYQLTYSSAH-TTPKSIYMVAIDRSAE---GFTASKQAMDDLTNK-R---AEELGTVNVD  114 (127)
T ss_dssp             TSEEEETTCCSTTC-TTTTCEEEEEECCSS-SCCEEEEEEEEEECSS---SEEECHHHHHHHHTS-C---HHHHSSEEEE
T ss_pred             CeeccccccccCCC-CCCCceEEEEECCCC-CcceEEEEEEEecCCC---ceeecHHHHHHhcCC-c---cccceeEEEE
Confidence            3466555  55654 899999999975321 0226899999998754   499999999999854 2   2246899999


Q ss_pred             EEEEe
Q 025808          136 FRRVP  140 (247)
Q Consensus       136 ~r~V~  140 (247)
                      |++|+
T Consensus       115 ~~~V~  119 (127)
T 3suj_A          115 VRKVD  119 (127)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99997

>3sum_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.87A {Moniliophthora perniciosa}

Probab=97.75  E-value=7.1e-05  Score=59.15  Aligned_cols=73  Identities=21%  Similarity=0.353  Sum_probs=53.5

Q ss_pred             ceEEEechhccCCCCCCceEEEEECCCCcccCCcEEEEEeeCCCCCCCceeeCHHHHhcccCCCcccccccCcEEEE-EE
Q 025808           58 ANVAGVSRLWKNGTGCGACYQVRCKVPQLCTDYGVYVVVTDYGEGDKTDFILSPRAYGRMALPDKSAELYSYGVVNV-EF  136 (247)
Q Consensus        58 ~~~aA~s~~~~~g~~CG~C~~V~c~~~~~C~~~sv~V~VtD~Cp~~~~~~DLS~~AF~~ia~~~~~~~~~~~G~v~I-~~  136 (247)
                      -.|.|..  | +...||.|++|+-.      +++|.|..+|.-.+. .-||||.+||+.|.+...+-+....|+|++ +|
T Consensus        48 P~igg~~--w-ns~~CGtCwkLtY~------G~sI~vlaID~a~~g-~~FnIs~~Amn~LT~G~~a~~a~elG~Vda~~~  117 (136)
T 3sum_A           48 PHFVAAP--E-AQTECGSCWKLRYK------GNHAFVTVVDRVEEA-NLFVGGTDLVKNLTTFNGAPEGYDWGTAQLFSA  117 (136)
T ss_dssp             TSEEECC--B-TTBCTTCEEEEEET------TEEEEEEEEECCCST-TEEEECHHHHHHHTCBTTBCHHHHHSEEECSEE
T ss_pred             Ccccccc--c-CCCCCCceEEEEEC------CeEEEEEEEecCCCc-ceEeehHHHHHHHhCCCccccceecceeeeeEE
Confidence            3466654  4 55899999999963      579999999986421 139999999999985421111235799999 99


Q ss_pred             EEEe
Q 025808          137 RRVP  140 (247)
Q Consensus       137 r~V~  140 (247)
                      ++|+
T Consensus       118 ~qVd  121 (136)
T 3sum_A          118 YQVD  121 (136)
T ss_dssp             EEEC
T ss_pred             EEcC
Confidence            9997

>2eng_A Endoglucanase V; cellulose degradation, hydrolase (endoglucanase), glycosidase; 1.50A {Humicola insolens} SCOP: b.52.1.1 PDB: 3eng_A* 4eng_A* 1hd5_A 1oa7_A* 1oa9_A 1l8f_A

Probab=94.15  E-value=0.031  Score=47.08  Aligned_cols=50  Identities=22%  Similarity=0.255  Sum_probs=33.4

Q ss_pred             EEEec-hhccCCCCCCceEEEEECCCCcccCCcEEEEEeeCCCC-CCCceeeC
Q 025808           60 VAGVS-RLWKNGTGCGACYQVRCKVPQLCTDYGVYVVVTDYGEG-DKTDFILS  110 (247)
Q Consensus        60 ~aA~s-~~~~~g~~CG~C~~V~c~~~~~C~~~sv~V~VtD~Cp~-~~~~~DLS  110 (247)
                      +||.+ .--.....|++||+++=++. ...+|+.+|+||+.... ..+||||.
T Consensus        72 FaA~~~~g~~e~~~Cc~C~~LtFt~~-~~~GKkmiVQ~TNtG~Dl~~n~FDl~  123 (210)
T 2eng_A           72 FAATSIAGSNEAGWCCACYELTFTSG-PVAGKKMVVQSTSTGGDLGSNHFDLN  123 (210)
T ss_dssp             EEEEECTTCCHHHHTTCEEEEEECSG-GGTTCEEEEEEEEC-----CCEEEEE
T ss_pred             eeeeeccCCccccccceeEEEEEcCC-CcCCCEEEEEEecccCCCCCCceeEe
Confidence            55665 42222367999999997653 24578999999999865 45899984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	247
d1n10a2	143	b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-t	1e-33
d1n10a1	95	b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {T	6e-27
d1whoa_	94	b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum praten	3e-21
d1wc2a1	180	b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mu	2e-12

>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 143

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Pollen allergen PHL P 1 N-terminal domain
domain: Pollen allergen PHL P 1 N-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

 Score =  117 bits (293), Expect = 1e-33
 Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 5/122 (4%)

Query: 29  RATYYGSPDSLGTPT--GACGFGEYGRTVNDANVAGVS-RLWKNGTGCGACYQVRCKVPQ 85
           ++T+YG P   G     GACG+ +  +          +  ++K+G GCG+C++++C  P+
Sbjct: 21  KSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTKPE 80

Query: 86  LCTDYGVYVVVTDYGEG--DKTDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWY 143
            C+   V V +TD  E       F LS  A+G MA      +L S G + ++FRRV C Y
Sbjct: 81  ACSGEPVVVHITDDNEEPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKY 140

Query: 144 KG 145
             
Sbjct: 141 PE 142

>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 95

class: All beta proteins
fold: C2 domain-like
superfamily: PHL pollen allergen
family: PHL pollen allergen
domain: PHL P 1 C-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

 Score = 97.9 bits (244), Expect = 6e-27
 Identities = 31/96 (32%), Positives = 54/96 (56%), Gaps = 2/96 (2%)

Query: 147 NLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPE 206
            + F V + S  P+YLA+ + YV G  DV+AV+I ++   +W+ ++ ++GA++ I +P +
Sbjct: 2   KVTFHVEKGSN-PNYLALLVKYVNGDGDVVAVDIKEKGKDKWIELKESWGAIWRIDTPDK 60

Query: 207 GAISLRFQVSGSAGLTWVVANNAIPSDWKAGVAYES 242
                  + +   G T   A + IP  WKA  +YES
Sbjct: 61  LTGPFTVRYTTEGG-TKTEAEDVIPEGWKADTSYES 95

>d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 94

class: All beta proteins
fold: C2 domain-like
superfamily: PHL pollen allergen
family: PHL pollen allergen
domain: PHL P 2
species: Timothy grass (Phleum pratense) [TaxId: 15957]

 Score = 82.9 bits (205), Expect = 3e-21
 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 4/94 (4%)

Query: 148 LQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEG 207
           + F V + S    +LA+ + Y      +  VE+ +    EWVAM +  G V+   S    
Sbjct: 4   VTFTVEKGSN-EKHLAVLVKYEGD--TMAEVELREHGSDEWVAMTKGEGGVWTFDSEEPL 60

Query: 208 AISLRFQVSGSAGLTWVVANNAIPSDWKAGVAYE 241
                F+     G    V ++ +P  +  G  Y 
Sbjct: 61  QGPFNFRFLTEKG-MKNVFDDVVPEKYTIGATYA 93

>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]} Length = 180

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Eng V-like
domain: Endoglucanase (CMCase)
species: Blue mussel (Mytilus edulis) [TaxId: 6550]

 Score = 61.6 bits (149), Expect = 2e-12
 Identities = 25/164 (15%), Positives = 41/164 (25%), Gaps = 38/164 (23%)

Query: 27  YSRATYYGSPDSLGTPTGACGFG------EYGRTVNDANVAGVSRLWKN------GTGCG 74
            +  T Y          GACG G      ++G        A     + +      G  CG
Sbjct: 16  CASTTNYHDSHK-----GACGCGPASGDAQFGWNAGSFVAAASQMYFDSGNKGWCGQHCG 70

Query: 75  ACYQVRCKVPQLCTDYG-------VYVVVTDY--GEGDKTDFILSPRAYGRMALPDKSAE 125
            C ++      +    G          ++T+         D+      YG          
Sbjct: 71  QCIKLTTTGGYVPGQGGPVREGLSKTFMITNLCPNIYPNQDWCNQGSQYGGHNKYGYELH 130

Query: 126 L-----------YSYGVVNVEFRRVPCWYKGYNLQFKVHENSRY 158
           L             +      +  V C  +  N   +   NS Y
Sbjct: 131 LDLENGRSQVTGMGWNNPETTWEVVNCDSEH-NHDHRTPSNSMY 173

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	247
d1n10a2	143	Pollen allergen PHL P 1 N-terminal domain {Timothy	100.0
d1wc2a1	180	Endoglucanase (CMCase) {Blue mussel (Mytilus eduli	99.97
d1n10a1	95	PHL P 1 C-terminal domain {Timothy grass (Phleum p	99.96
d1whoa_	94	PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 1	99.94
d1bw3a_	125	Barwin {Barley (Hordeum vulgare) [TaxId: 4513]}	98.55
d2enga_	210	Endoglucanase V (Eng V) {Humicola insolens [TaxId:	92.66
d1ogpa1	127	Sulfite oxidase, C-terminal domain {Mouse-ear cres	87.14
d2a9da1	123	Sulfite oxidase, C-terminal domain {Chicken (Gallu	85.37

>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]}

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Pollen allergen PHL P 1 N-terminal domain
domain: Pollen allergen PHL P 1 N-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

Probab=100.00  E-value=1.5e-38  Score=256.69  Aligned_cols=128  Identities=30%  Similarity=0.588  Sum_probs=109.0

Q ss_pred             cccCCCCceeeEEEEECCCCCCCC--CCcccCCCCCCCCCCCceEEEec-hhccCCCCCCceEEEEECCCCcccCCcEEE
Q 025808           18 LCYSHYTSTYSRATYYGSPDSLGT--PTGACGFGEYGRTVNDANVAGVS-RLWKNGTGCGACYQVRCKVPQLCTDYGVYV   94 (247)
Q Consensus        18 ~~~~~~~~~~g~aT~Y~~~~~~g~--~~GaCGy~~~~~~~~~~~~aA~s-~~~~~g~~CG~C~~V~c~~~~~C~~~sv~V   94 (247)
                      .+...++|++|+||||+.+++.++  .+|||||++++..|++.++||+| .+|++|..||+||||+|.++.+|.+++|+|
T Consensus        10 ~a~~~~~w~~g~AT~Yg~~~~~~~~~~gGACGyg~~~~~p~g~~~aAls~~l~~~g~~CG~cyev~c~~~~~c~~~sv~V   89 (143)
T d1n10a2          10 TATYGDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTKPEACSGEPVVV   89 (143)
T ss_dssp             CCBCCCSCEEEEEEEEC----------CCTTCCCCTTSTTTTTCEEEECHHHHGGGTTSSCEEEEEECSSTTBCSCCEEE
T ss_pred             ccccCCCcEeeEEeEeCCCCCCCCCCCcccCCCCCcccCCCcceEEEeCHhHccCCCcCCcceEeEcCCCCcccCCCEEE
Confidence            344568999999999999877664  36999999988888899999999 999999999999999999998999999999


Q ss_pred             EEeeCCCCC--CCceeeCHHHHhcccCCCcccccccCcEEEEEEEEEeeCCCC
Q 025808           95 VVTDYGEGD--KTDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKG  145 (247)
Q Consensus        95 ~VtD~Cp~~--~~~~DLS~~AF~~ia~~~~~~~~~~~G~v~I~~r~V~C~~~g  145 (247)
                      +|||.||.+  ..|||||+.||.+||++++..++++.|+|+|+||||+|.++|
T Consensus        90 ~vtd~c~~~~~~~hfDLS~~AF~~iA~~~~~~~~~~~Giv~V~yRrV~C~~~g  142 (143)
T d1n10a2          90 HITDDNEEPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPE  142 (143)
T ss_dssp             EEEEECSSCSSSSEEEEEHHHHHTTBSTTCHHHHHTTCSEEEEEEECCCCCCT
T ss_pred             EEEecccCCCCCccccCCHHHHhhhccccchhhheecCccceEEEEEeccCCC
Confidence            999999863  479999999999999886555567899999999999999986

>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]}

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Eng V-like
domain: Endoglucanase (CMCase)
species: Blue mussel (Mytilus edulis) [TaxId: 6550]

Probab=99.97  E-value=1.7e-32  Score=226.88  Aligned_cols=117  Identities=16%  Similarity=0.259  Sum_probs=97.3

Q ss_pred             CCceeeEEEEECCCCCCCCCCcccCCCCCCCC-----CCCceEEEec-hhccC------CCCCCceEEEEECCCCcc---
Q 025808           23 YTSTYSRATYYGSPDSLGTPTGACGFGEYGRT-----VNDANVAGVS-RLWKN------GTGCGACYQVRCKVPQLC---   87 (247)
Q Consensus        23 ~~~~~g~aT~Y~~~~~~g~~~GaCGy~~~~~~-----~~~~~~aA~s-~~~~~------g~~CG~C~~V~c~~~~~C---   87 (247)
                      ..|+.+++|||+.+     .+|||||+++...     .++.++||+| +||++      |++||+||||+|++...|   
T Consensus        12 ~g~~~A~aT~Ygd~-----~~GACGyG~~~~~~~~~~g~G~~tAAlS~~lf~~~~~~~~G~~CG~CyeV~C~~~~~~~~~   86 (180)
T d1wc2a1          12 NGKSCASTTNYHDS-----HKGACGCGPASGDAQFGWNAGSFVAAASQMYFDSGNKGWCGQHCGQCIKLTTTGGYVPGQG   86 (180)
T ss_dssp             TTEEEEEEEEECCC-----BCTTTTCSCSSSSBCCSSGGGSCEEEEEHHHHCTTCCSSSCTTTTCEEEEEEEEEECTTSC
T ss_pred             CCccccceEEeCCC-----CCCCCCCCcCCCCCccccCCcceEeeccHHHhcCCcccccccccCCEEEEEECCCCCCccC
Confidence            47999999999976     4799999987432     2368999999 99999      899999999999864322   


Q ss_pred             ----cCCcEEEEEeeCCCC-------C--------------CCceeeCHHHHhcccCCCcccccccCcEEEEEEEEEeeC
Q 025808           88 ----TDYGVYVVVTDYGEG-------D--------------KTDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCW  142 (247)
Q Consensus        88 ----~~~sv~V~VtD~Cp~-------~--------------~~~~DLS~~AF~~ia~~~~~~~~~~~G~v~I~~r~V~C~  142 (247)
                          .+++|+|||||+||.       |              +.||||+ .||.+||       ....|+|+|+||||+|+
T Consensus        87 ~~~~~g~sV~V~iTd~CP~n~~n~gWCn~p~~~~~~n~~g~~~HFDLs-~af~~ia-------~~~~G~v~V~yrrV~C~  158 (180)
T d1wc2a1          87 GPVREGLSKTFMITNLCPNIYPNQDWCNQGSQYGGHNKYGYELHLDLE-NGRSQVT-------GMGWNNPETTWEVVNCD  158 (180)
T ss_dssp             CCCCTTCEEEEEEEEEECSSTTSTTTSCCSSSSSCCCTTSCSEEEEEE-CTTSTTG-------GGTCSSEEEEEEEECHH
T ss_pred             CCCCCCCcEEEEEEecCCCCCCCCCccCCccccccccccCcccceech-HHHHHHh-------hhcCCcceeEEEEeeCC
Confidence                246999999999993       2              1299997 5999999       45799999999999999


Q ss_pred             CCCcceEEEEe
Q 025808          143 YKGYNLQFKVH  153 (247)
Q Consensus       143 ~~g~ni~~~v~  153 (247)
                      ..+ ++++++.
T Consensus       159 ~~g-~~~~~~~  168 (180)
T d1wc2a1         159 SEH-NHDHRTP  168 (180)
T ss_dssp             HHH-HHCTTSC
T ss_pred             Ccc-ccccccc
Confidence            988 8887654

>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]}

class: All beta proteins
fold: C2 domain-like
superfamily: PHL pollen allergen
family: PHL pollen allergen
domain: PHL P 1 C-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

Probab=99.96  E-value=2.8e-29  Score=188.81  Aligned_cols=93  Identities=34%  Similarity=0.730  Sum_probs=83.3

Q ss_pred             cceEEEEecCCCCCcEEEEEEEEecCccceeEEEEEecCCcceEEcccccCceeccCC--CCCCCeeEEEEEEecCCCEE
Q 025808          146 YNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISS--PPEGAISLRFQVSGSAGLTW  223 (247)
Q Consensus       146 ~ni~~~v~~gS~~~~w~a~~v~n~~g~~~I~sVev~~~~~~~W~~m~r~~g~~W~~~~--~~~gp~~lr~~vt~~~g~~~  223 (247)
                      ++|+|+|+||| |||||+++|.|++|.++|.+|||++.+++.|++|+|+|||+|+.++  ++++||+|||+  +.+| ++
T Consensus         1 t~i~F~v~~gs-np~~lav~v~n~~g~gdI~~vevk~~g~~~W~~m~r~~ga~W~~~~~~~~~gpls~Rvt--~~~G-~~   76 (95)
T d1n10a1           1 TKVTFHVEKGS-NPNYLALLVKYVNGDGDVVAVDIKEKGKDKWIELKESWGAIWRIDTPDKLTGPFTVRYT--TEGG-TK   76 (95)
T ss_dssp             CCCEEEECTTC-BTTEEEEEEECCCCSSCEEEEEEEETTCCCCEECBCCTTTCEEEECSSCCCSCEEEEEE--ESSS-CE
T ss_pred             CcEEEEECCCC-CcceEEEEEEEcCCCCcEEEEEEEeCCCCcceEEEECCCCeEEECCCCCCCcCEEEEEE--EcCC-CE
Confidence            48999999999 8999999999999999999999999888899999999999998643  46688766654  5577 89


Q ss_pred             EEEecccCCCCCCCcEEec
Q 025808          224 VVANNAIPSDWKAGVAYES  242 (247)
Q Consensus       224 iv~~~vip~~w~~g~~y~t  242 (247)
                      +++.||||++|++|++|++
T Consensus        77 ~v~~nViP~~W~~G~tY~s   95 (95)
T d1n10a1          77 TEAEDVIPEGWKADTSYES   95 (95)
T ss_dssp             EEEEEEECSSCCSSEEEEC
T ss_pred             EEECceECCCCCCCCEEeC
Confidence            9999999999999999986

>d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 15957]}

class: All beta proteins
fold: C2 domain-like
superfamily: PHL pollen allergen
family: PHL pollen allergen
domain: PHL P 2
species: Timothy grass (Phleum pratense) [TaxId: 15957]

Probab=99.94  E-value=9.6e-27  Score=174.57  Aligned_cols=89  Identities=26%  Similarity=0.515  Sum_probs=78.5

Q ss_pred             ceEEEEecCCCCCcEEEEEEEEecCccceeEEEEEecCCcceEEcccccCceeccC--CCCCCCeeEEEEEEecCCCEEE
Q 025808          147 NLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDIS--SPPEGAISLRFQVSGSAGLTWV  224 (247)
Q Consensus       147 ni~~~v~~gS~~~~w~a~~v~n~~g~~~I~sVev~~~~~~~W~~m~r~~g~~W~~~--~~~~gp~~lr~~vt~~~g~~~i  224 (247)
                      .|+|+|+||| |+|||++++.|++|  +|..|||+++++++|++|+|+|||+|+.+  .++.+||+||  +|+.+| +++
T Consensus         3 ~v~f~v~~GS-np~~lav~v~~~gg--~i~~vev~~~gs~~W~~M~r~wGa~W~~~~~~~~~gplsfR--vt~~~G-~~~   76 (94)
T d1whoa_           3 KVTFTVEKGS-NEKHLAVLVKYEGD--TMAEVELREHGSDEWVAMTKGEGGVWTFDSEEPLQGPFNFR--FLTEKG-MKN   76 (94)
T ss_dssp             SEEEEECTTC-BTTEEEEEEEETTC--CEEEEEEECTTCCCCEECEECSTTEEEEECSSCCCSSEEEE--EEETTS-CEE
T ss_pred             cEEEEECCCC-CccEEEEEEEEcCC--CEEEEEEEECCCCceeECccCcCccEEECCCCCCCccEEEE--EEEcCC-CEE
Confidence            6999999999 89999999999965  89999999988889999999999999754  4567775555  556788 899


Q ss_pred             EEecccCCCCCCCcEEe
Q 025808          225 VANNAIPSDWKAGVAYE  241 (247)
Q Consensus       225 v~~~vip~~w~~g~~y~  241 (247)
                      +++||||++|++|++|+
T Consensus        77 v~~nViP~~W~~G~ty~   93 (94)
T d1whoa_          77 VFDDVVPEKYTIGATYA   93 (94)
T ss_dssp             EEEEEECSSCCTTCEEC
T ss_pred             EEcceECCCCCCCCEEC
Confidence            99999999999999996

>d1bw3a_ b.52.1.2 (A:) Barwin {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Barwin
domain: Barwin
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=98.55  E-value=2.5e-08  Score=74.44  Aligned_cols=63  Identities=21%  Similarity=0.392  Sum_probs=52.6

Q ss_pred             CCCCceEEEEECCCCcccCCcEEEEEeeCCCCCCCceeeC-HHHHhcccCCCcccccccCcEEEEEEEEEeeC
Q 025808           71 TGCGACYQVRCKVPQLCTDYGVYVVVTDYGEGDKTDFILS-PRAYGRMALPDKSAELYSYGVVNVEFRRVPCW  142 (247)
Q Consensus        71 ~~CG~C~~V~c~~~~~C~~~sv~V~VtD~Cp~~~~~~DLS-~~AF~~ia~~~~~~~~~~~G~v~I~~r~V~C~  142 (247)
                      ..||+|++|+.+.    ++.+++++|+|+|..  +.|||. +..|++|...+.   ....|.+.|.|++|.|.
T Consensus        61 ~sCGkclrvTN~a----tga~~~~RiVDqCsn--gGlDLD~~~vFn~iDtdG~---G~~~Ghl~V~y~fV~C~  124 (125)
T d1bw3a_          61 AACGKCLRVTNPA----TGAQITARIVDQCAN--GGLDLDWDTVFTKIDTNGI---GYQQGHLNVNYQFVDCR  124 (125)
T ss_dssp             GGTTCEEEEEETT----TTEEEEEEEEECCSS--SSCCSCSSSSHHHHCSSCH---HHHHSEEEEEEEEECCC
T ss_pred             ccccceEEeeecc----cCcEEEEEEeecccC--CCCccccHhhhheecCCCc---ccccccEEEEEEEecCC
Confidence            6799999999755    367999999999985  578888 679999975543   35689999999999995

>d2enga_ b.52.1.1 (A:) Endoglucanase V (Eng V) {Humicola insolens [TaxId: 34413]}

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Eng V-like
domain: Endoglucanase V (Eng V)
species: Humicola insolens [TaxId: 34413]

Probab=92.66  E-value=0.035  Score=44.62  Aligned_cols=50  Identities=22%  Similarity=0.269  Sum_probs=33.1

Q ss_pred             EEEec-hhccCCCCCCceEEEEECCCCcccCCcEEEEEeeCCCC-CCCceeeC
Q 025808           60 VAGVS-RLWKNGTGCGACYQVRCKVPQLCTDYGVYVVVTDYGEG-DKTDFILS  110 (247)
Q Consensus        60 ~aA~s-~~~~~g~~CG~C~~V~c~~~~~C~~~sv~V~VtD~Cp~-~~~~~DLS  110 (247)
                      +||.+ .-...+..|.+|||++=+..+ =.+|+.+|+||+.--. ..+||||.
T Consensus        72 fAA~~~~g~~e~~~Cc~Cy~LtFTs~~-~~GKkMiVQ~tNTGgDlg~n~FDl~  123 (210)
T d2enga_          72 FAATSIAGSNEAGWCCACYELTFTSGP-VAGKKMVVQSTSTGGDLGSNHFDLN  123 (210)
T ss_dssp             EEEEECTTCCHHHHTTCEEEEEECSGG-GTTCEEEEEEEEC-----CCEEEEE
T ss_pred             eeeeeecCCCccccccccEEEEeecCC-cCCCEEEEEEeccCCccCCCeeeEe
Confidence            56666 544444679999999876421 1367899999998554 45799974

>d1ogpa1 b.1.18.6 (A:263-389) Sulfite oxidase, C-terminal domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Molybdenum-containing oxidoreductases-like dimerisation domain
domain: Sulfite oxidase, C-terminal domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.14  E-value=0.29  Score=36.14  Aligned_cols=51  Identities=18%  Similarity=0.273  Sum_probs=33.0

Q ss_pred             cCccceeEEEEEecCCcceEEcccccC-----------------ceeccCCCCCCCeeEEEEEEecCC
Q 025808          170 AGQNDVLAVEIWQEDYQEWVAMRRAFG-----------------AVFDISSPPEGAISLRFQVSGSAG  220 (247)
Q Consensus       170 ~g~~~I~sVev~~~~~~~W~~m~r~~g-----------------~~W~~~~~~~gp~~lr~~vt~~~g  220 (247)
                      ||-.+|+.|||+.+++.+|++......                 -.|...-+..+...|..|-++..|
T Consensus        31 Ggg~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~~~~~~~~~w~W~~~~~~~~~~g~~~i~~RA~D~~g   98 (127)
T d1ogpa1          31 GGGRGIERVDISLDGGKNWVEASRTQEPGKQYISEHSSSDKWAWVLFEATIDVSQTTEVIAKAVDSAA   98 (127)
T ss_dssp             STTCCEEEEEEESSTTSSCEECEEESSSSSCCCSSSTTSCTTSCEEEEEEEEESSCEEEEEEEEETTC
T ss_pred             CCCceEEEEEEEeCCCCccEEeeccCCccccccccccCCcccEEEEEEEEecCCCceEEEEEEECCCC
Confidence            343479999999999999987653211                 012222234567777777777666

>d2a9da1 b.1.18.6 (A:344-466) Sulfite oxidase, C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Molybdenum-containing oxidoreductases-like dimerisation domain
domain: Sulfite oxidase, C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=85.37  E-value=0.62  Score=34.06  Aligned_cols=51  Identities=14%  Similarity=0.259  Sum_probs=33.5

Q ss_pred             cCccceeEEEEEecCCcceEEcccc--c------C--ceeccC--CCCCCCeeEEEEEEecCC
Q 025808          170 AGQNDVLAVEIWQEDYQEWVAMRRA--F------G--AVFDIS--SPPEGAISLRFQVSGSAG  220 (247)
Q Consensus       170 ~g~~~I~sVev~~~~~~~W~~m~r~--~------g--~~W~~~--~~~~gp~~lr~~vt~~~g  220 (247)
                      ||..+|+.|||+.+++.+|++....  .      +  -.|+..  -+..+++.|..|-++..|
T Consensus        31 ggg~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~~~~W~~W~~~~~~~~~~~~~i~~RA~D~~G   93 (123)
T d2a9da1          31 GGGREVVRVDVSLDGGRTWKVARLMGDKAPPGRAWAWALWELTVPVEAGTELEIVCKAVDSSY   93 (123)
T ss_dssp             STTCCEEEEEEESBSSSSCEECEECSCCCCTTCCCSCEEEEEEEEECTTCEEEEEEEEEETTC
T ss_pred             CCCceEEEEEEEcCCCCccEEeEecCccCCCCceeEEEEEEEEEEcCCCCeEEEEEEEEcCCC
Confidence            3434799999999999999876532  1      1  134433  223457778888887776