Citrus Sinensis ID: 025890

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240------
Protein Sequence
MLLYVSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRSSKKRTS
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHcccccccccccccccEEccccEEccccEEccccEEccccEEccccEEccccEEccccEEccccEEEcEEEcccEEEccccEEccccccccccccccEEEEcEEEEEEEccccEEccccccccccccccEEccccEEcccEEEEcccEEccccEEEEcEEEEEcEEEcccEEEccEEEEcccEEEccccEEccccccccccccccEEEEcccccHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cEEEcccccccccccccccccEEEccccEEcccEEEcccEEEcccEEEcccEEEcccEEEcccEEEccccEEEcEEEEEEEEEccEEEEEccEEEccccccEcccccccEEEEcccEEEEEcccEEEEcccEEccccccccEEcccEEEccEEEEEEEEEEcccEEEEEEEEEEEEEEEccEEEEEEEEEEcccEEEcccEEEEEEcccccccccccEEcccccccHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MLLYVSDIESRQQFQkwhngggifhqsacidstvlIEVGAIVHSKAVLGanvcigsgtvvgpavtigqstnigfNVALSnciigdsciihngvcigqdgfgffvdehgnmlkkpqllnarignhveiganscidrgswrdtvigdhskidnlVQIGHNVAIGKSCmlcgqvgiagsatigdyvTLGGRVAVRDHVSIASKVRLAAnscvfkditepgdyggfpavpihEWRRQVANQIRSSKKRTS
Flexible Loop (DISEMBL)
MLLYVSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRSSKKRTS
Low Complexity Region (SEG)
MLLYVSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRSSKKRTS
Disordered region (IsUnstruct)
***YVSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQV************
Disordered Region (DISOPRED)
MLLYVSDIESRQQFQKWH****IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQI*SSK****
Disordered Region (DISEMBL)
MLLYVSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQ*************
Disordered Region (DISPRO)
MLLYVSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRSSKK***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLLYVSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRSSKKRTS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	246	2.2.26 [Sep-21-2011]
F4JIP6	304	Probable UDP-3-O-acylgluc	yes	no	0.951	0.769	0.730	3e-99
F4JGP6	330	Probable UDP-3-O-acylgluc	no	no	0.914	0.681	0.656	3e-91
Q89KQ2	355	UDP-3-O-acylglucosamine N	yes	no	0.890	0.616	0.477	1e-47
A5EK46	355	UDP-3-O-acylglucosamine N	yes	no	0.939	0.650	0.449	2e-47
A4YVF7	355	UDP-3-O-acylglucosamine N	yes	no	0.939	0.650	0.449	3e-47
Q2K8X9	354	UDP-3-O-acylglucosamine N	yes	no	0.882	0.612	0.464	1e-46
Q11IJ0	350	UDP-3-O-acylglucosamine N	yes	no	0.841	0.591	0.457	2e-46
A7HY09	353	UDP-3-O-acylglucosamine N	yes	no	0.898	0.626	0.450	1e-45
Q1MH46	354	UDP-3-O-acylglucosamine N	yes	no	0.882	0.612	0.455	2e-45
Q2W4D3	339	UDP-3-O-acylglucosamine N	yes	no	0.934	0.678	0.428	3e-45

>sp|F4JIP6|LPXD2_ARATH Probable UDP-3-O-acylglucosamine N-acyltransferase 2, mitochondrial OS=Arabidopsis thaliana GN=LPXD2 PE=3 SV=1

 Score =  361 bits (927), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 171/234 (73%), Positives = 199/234 (85%)

Query: 11  RQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQST 70
           ++ F +W NGGG  H SA I S+ L+E GA+VH KAVLGA V +GSGTV+GP+V IG ST
Sbjct: 70  KEGFLRWENGGGTCHSSAQIYSSALVEFGAVVHEKAVLGAEVHVGSGTVIGPSVDIGPST 129

Query: 71  NIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGAN 130
            IG+NV++SNC IGDSC+IHNGVCIGQDGFGF+VDEHGNM+KKPQ LN +IGN VEIGAN
Sbjct: 130 RIGYNVSISNCSIGDSCVIHNGVCIGQDGFGFYVDEHGNMVKKPQTLNVKIGNRVEIGAN 189

Query: 131 SCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVA 190
           +CIDRGSWR+TVI D +KIDNLVQIGHNV IGK C+LCGQVGIAGS TIGDYV LGGR A
Sbjct: 190 TCIDRGSWRETVIEDDTKIDNLVQIGHNVIIGKCCLLCGQVGIAGSVTIGDYVALGGRAA 249

Query: 191 VRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRSSKKR 244
           VRDHVSI SKVRLAANSCV ++ITEPGD+GGFPAVPIHEWR+Q+     ++K+ 
Sbjct: 250 VRDHVSIVSKVRLAANSCVTRNITEPGDFGGFPAVPIHEWRKQIVRAQIANKRE 303

Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that in bacteria anchors the lipopolysaccharide to the outer membrane of the cell. Catalyzes the N-acylation of UDP-3-O-(hydroxymyristoyl)glucosamine using 3-hydroxymyristoyl-ACP as the acyl donor. Lipid A-like molecules in plants may serve as structural components of the outer membranes of mitochondria and/or chloroplasts, or may be involved in signal transduction or plant defense responses.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: -

>sp|F4JGP6|LPXD1_ARATH Probable UDP-3-O-acylglucosamine N-acyltransferase 1, mitochondrial OS=Arabidopsis thaliana GN=LPXD1 PE=2 SV=1

 Score =  334 bits (857), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 168/256 (65%), Positives = 194/256 (75%), Gaps = 31/256 (12%)

Query: 14  FQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIG 73
           F +W NGGG++H+SA IDS+ L+E GA+VH +A+LGA V IGS TV+G +V IG ST IG
Sbjct: 80  FLRWRNGGGMYHRSALIDSSALVEFGAVVHQEAILGAEVHIGSNTVIGSSVKIGPSTKIG 139

Query: 74  FNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCI 133
                 NC IGD C+IHNGVCIGQDGFGF+VD++GNM+KKPQ LN +IGN VEIGAN+CI
Sbjct: 140 ------NCSIGDLCVIHNGVCIGQDGFGFYVDDNGNMVKKPQTLNVKIGNRVEIGANTCI 193

Query: 134 DRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRD 193
           DRGSWRDTVIGD +KIDNLVQIGHNV IGK C+ CGQVGIAGSA IGD+V LGGRVAVRD
Sbjct: 194 DRGSWRDTVIGDDTKIDNLVQIGHNVIIGKCCLFCGQVGIAGSAEIGDFVALGGRVAVRD 253

Query: 194 HVSIASKVRLAANSCVFKDITEPGDYGGFPA-------------------------VPIH 228
           HVSI SKVRLAANSCV K+ITEPGDYGGFPA                         VPIH
Sbjct: 254 HVSIVSKVRLAANSCVTKNITEPGDYGGFPAYKKTEPDSAFASDKHCFILQKILIQVPIH 313

Query: 229 EWRRQVANQIRSSKKR 244
           +WRRQ+     SSK++
Sbjct: 314 QWRRQIVEAQISSKRK 329

Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that in bacteria anchors the lipopolysaccharide to the outer membrane of the cell. Catalyzes the N-acylation of UDP-3-O-(hydroxymyristoyl)glucosamine using 3-hydroxymyristoyl-ACP as the acyl donor. Lipid A-like molecules in plants may serve as structural components of the outer membranes of mitochondria and/or chloroplasts, or may be involved in signal transduction or plant defense responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q89KQ2|LPXD_BRAJA UDP-3-O-acylglucosamine N-acyltransferase OS=Bradyrhizobium japonicum (strain USDA 110) GN=lpxD PE=3 SV=1

 Score =  189 bits (481), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 108/226 (47%), Positives = 139/226 (61%), Gaps = 7/226 (3%)

Query: 15  QKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVG------PAVTIGQ 68
           Q W    GI   SA ID T  +E G IV   AV+GA+V IGSGTVVG      P V IG+
Sbjct: 111 QSWVGNDGI-APSAIIDPTARLEDGVIVDPLAVIGADVEIGSGTVVGVGAVIGPGVKIGR 169

Query: 69  STNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIG 128
             N+G   A+   +IG+  +IH G  IGQDG+GF        LK PQ     I N+VE+G
Sbjct: 170 DCNVGARTAIQCALIGNDVLIHPGCSIGQDGYGFIFFGPEGHLKVPQTGRVLIQNNVEVG 229

Query: 129 ANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGR 188
           A + IDRGS RDTVIG+ +KIDN VQIGHNV IG++C+L  Q+G+AGS TIGD V LG +
Sbjct: 230 AGTTIDRGSLRDTVIGEGTKIDNQVQIGHNVTIGRNCLLAAQIGLAGSLTIGDNVALGAK 289

Query: 189 VAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQV 234
           V + +H+ I    ++ A S V  DI   G +GGF A P  +W +++
Sbjct: 290 VGINNHLKIGDGAQVTAMSGVKDDIPPNGRWGGFFAKPTKQWFKEI 335

Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.

Bradyrhizobium japonicum (strain USDA 110) (taxid: 224911)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|A5EK46|LPXD_BRASB UDP-3-O-acylglucosamine N-acyltransferase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=lpxD PE=3 SV=1

 Score =  188 bits (478), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 107/238 (44%), Positives = 143/238 (60%), Gaps = 7/238 (2%)

Query: 15  QKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVG------PAVTIGQ 68
           Q W    GI  Q A ID +  +E G +V   AV+GA+V IG+GT+VG      P V IG+
Sbjct: 111 QSWFGCDGISSQ-AIIDPSARLEDGVVVEPLAVIGAHVEIGAGTIVGAGAVIGPHVKIGR 169

Query: 69  STNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIG 128
             N+G    +   +IG+  +IH    IGQDG+GF     G  +K PQ     I NHVEIG
Sbjct: 170 DCNVGARTVIQCALIGNDVLIHPACAIGQDGYGFIFFGPGGHVKVPQTGRVIIQNHVEIG 229

Query: 129 ANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGR 188
           A + IDRGS RDTVIG+ +KIDN VQIGHNV IG+ C+L  Q+G+AGS TIGD V LG +
Sbjct: 230 AGTTIDRGSLRDTVIGEGTKIDNQVQIGHNVTIGRHCLLAAQIGLAGSLTIGDNVALGAK 289

Query: 189 VAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRSSKKRTS 246
           V + +H++I    ++ A S V  DI   G +GGF A P  +W R++    R  + +T+
Sbjct: 290 VGINNHLTIGDGAQVTAMSGVKDDIPPNGRWGGFFAKPTKQWFREIVAVERLVRDQTA 347

Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.

Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) (taxid: 288000)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|A4YVF7|LPXD_BRASO UDP-3-O-acylglucosamine N-acyltransferase OS=Bradyrhizobium sp. (strain ORS278) GN=lpxD PE=3 SV=1

 Score =  188 bits (478), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 107/238 (44%), Positives = 142/238 (59%), Gaps = 7/238 (2%)

Query: 15  QKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVG------PAVTIGQ 68
           Q W    GI  Q A ID T  +E G IV   AV+GA+V IG+GT+VG      P V +G+
Sbjct: 111 QPWFGDDGISPQ-AIIDPTARLEDGVIVEPLAVIGAHVEIGAGTIVGAGAVIGPHVKVGR 169

Query: 69  STNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIG 128
             N+G    +   +IG+  +IH G  IGQDG+GF         K PQ     I NHVE+G
Sbjct: 170 DCNVGARTVIQCSLIGNDVLIHPGCSIGQDGYGFIFFGANGHTKVPQTGRVIIQNHVEVG 229

Query: 129 ANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGR 188
           A + IDRGS RDTVIG+ +KIDN VQIGHNV IG+ C+L  Q+G+AGS TIGD V LG +
Sbjct: 230 AGTTIDRGSLRDTVIGEGTKIDNQVQIGHNVTIGRHCLLAAQIGLAGSLTIGDNVALGAK 289

Query: 189 VAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRSSKKRTS 246
           V + +H++I    ++ A S V  DI   G +GGF A P  +W R++    R  + +T+
Sbjct: 290 VGINNHLTIGDGAQVTAMSGVKDDIPPNGRWGGFFAKPTKQWFREIVAVERLVRDQTA 347

Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.

Bradyrhizobium sp. (strain ORS278) (taxid: 114615)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q2K8X9|LPXD_RHIEC UDP-3-O-acylglucosamine N-acyltransferase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=lpxD PE=3 SV=1

 Score =  186 bits (472), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 104/224 (46%), Positives = 142/224 (63%), Gaps = 7/224 (3%)

Query: 27  SACIDSTVLIEVGAIVHSKAVLGANVCIGSGT------VVGPAVTIGQSTNIGFNVALSN 80
           SA ID +  +E G IV   AV+G +  IG GT      V+GP V IG+  +I    ++  
Sbjct: 122 SAVIDPSAKLEKGVIVEPLAVIGPHAEIGEGTRIGANSVIGPDVKIGRDCSIAAGASILC 181

Query: 81  CIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRD 140
            +IG+  +IHNGV IGQDGFG+     G M+K  Q+    I ++VEIGAN+ IDRG+  D
Sbjct: 182 ALIGNGVVIHNGVRIGQDGFGYAPGPRG-MIKIVQIGRVIIQDNVEIGANTTIDRGAMDD 240

Query: 141 TVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASK 200
           TVIG+ +KIDN VQIGHNV IG+ C +  QVGIAGS  IG+ V +GG+V ++ HV+I   
Sbjct: 241 TVIGEGTKIDNQVQIGHNVQIGRHCAIVSQVGIAGSTKIGNGVQIGGQVGIKGHVTIGDG 300

Query: 201 VRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRSSKKR 244
           V++AA S +  D+   G YGG PA P+ ++ R+ A Q+  SK R
Sbjct: 301 VQIAAKSGIMTDLAAGGQYGGIPARPLKDYLREAAQQVSKSKLR 344

Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.

Rhizobium etli (strain CFN 42 / ATCC 51251) (taxid: 347834)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q11IJ0|LPXD_MESSB UDP-3-O-acylglucosamine N-acyltransferase OS=Mesorhizobium sp. (strain BNC1) GN=lpxD PE=3 SV=2

 Score =  185 bits (470), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 98/214 (45%), Positives = 137/214 (64%), Gaps = 7/214 (3%)

Query: 28  ACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAV------TIGQSTNIGFNVALSNC 81
           A I    ++E GAI+ + AV+G    +G GT+VGP        +IG+   +G NV L   
Sbjct: 123 AVIAEGAVVEDGAIIEAGAVIGVGASVGRGTIVGPNTVIGARCSIGRDGYVGPNVMLQYA 182

Query: 82  IIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDT 141
           +IGD  IIH G  IGQDGFGF    +G   K PQ+    I + VEIGAN+ IDRG+  DT
Sbjct: 183 VIGDRVIIHPGAQIGQDGFGFLPGPNG-FEKNPQIGRVIIQDDVEIGANTTIDRGALSDT 241

Query: 142 VIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKV 201
           +IG+ +KIDNLVQIGHNV IG+ C++ G  G++GS  +GDYV LGG+V + DH++I ++ 
Sbjct: 242 IIGEGTKIDNLVQIGHNVHIGRRCVIAGLCGLSGSVKLGDYVMLGGQVGIADHITIGNRA 301

Query: 202 RLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVA 235
           +LAA+S V  D+ E   + G PA P+ +  R++A
Sbjct: 302 QLAASSGVMDDVPEGERWAGVPAKPMRQAFREIA 335

Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.

Mesorhizobium sp. (strain BNC1) (taxid: 266779)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|A7HY09|LPXD_PARL1 UDP-3-O-acylglucosamine N-acyltransferase OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=lpxD PE=3 SV=1

 Score =  183 bits (464), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 100/222 (45%), Positives = 136/222 (61%), Gaps = 1/222 (0%)

Query: 25  HQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIG 84
           H +A + + V +E G  + +   +G N  IG+ T VG   T+G+   IG NV LS+  +G
Sbjct: 127 HPTAKLGTGVTLEPGVTIGAGVEIGNNTVIGTNTSVGKGCTVGKDCFIGPNVTLSHAHLG 186

Query: 85  DSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIG 144
           D  ++H GV IGQDGFGF +       K PQL    + + VEIGANS +DRG+  DTVIG
Sbjct: 187 DRVMVHPGVRIGQDGFGFAMGLP-RHEKVPQLGRVIVQDDVEIGANSTVDRGAGPDTVIG 245

Query: 145 DHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLA 204
           + +KIDNLVQIGHNV IG+ C++  Q GIAGS  +GD+V L  +V V  H++I S  ++A
Sbjct: 246 EGTKIDNLVQIGHNVEIGRGCIIVSQTGIAGSTKLGDFVVLAAQVGVTGHLTINSGAQIA 305

Query: 205 ANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRSSKKRTS 246
           A   V  D+     YGG PA PI EWRR+V    +  ++R S
Sbjct: 306 ARGAVVHDVPAGQQYGGVPAKPIAEWRREVVELRKLGRRRRS 347

Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.

Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) (taxid: 402881)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q1MH46|LPXD_RHIL3 UDP-3-O-acylglucosamine N-acyltransferase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=lpxD PE=3 SV=1

 Score =  182 bits (461), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 102/224 (45%), Positives = 142/224 (63%), Gaps = 7/224 (3%)

Query: 27  SACIDSTVLIEVGAIVHSKAVLGANVCIGSGT------VVGPAVTIGQSTNIGFNVALSN 80
           SA ID +  +E G IV   AV+GA+  IG GT      ++GP V IG+  +I    ++  
Sbjct: 122 SAVIDPSARLEKGVIVEPMAVIGAHAEIGEGTRIGAHSIIGPNVKIGRDCSIAAGASIIC 181

Query: 81  CIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRD 140
            ++G+  IIHNG  IGQDGFG+     G M+K  Q+    I ++VEIGAN+ IDRG+  D
Sbjct: 182 ALLGNGVIIHNGARIGQDGFGYAPGPRG-MIKIVQIGRVIIQDNVEIGANTTIDRGAMDD 240

Query: 141 TVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASK 200
           TVIG+ +KIDN VQIGHNV IG+ C +   VGIAGSA IG+ V +GG+V ++ HV+I   
Sbjct: 241 TVIGEGTKIDNQVQIGHNVQIGRHCAIVALVGIAGSAKIGNGVQIGGQVGIKGHVTIGDG 300

Query: 201 VRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRSSKKR 244
           V++AA S +  D+   G YGG P  P++++ R VA Q+  +K R
Sbjct: 301 VQIAAQSGIMTDLAAGGQYGGTPGRPLNDYLRDVAQQMSKTKLR 344

Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.

Rhizobium leguminosarum bv. viciae (strain 3841) (taxid: 216596)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q2W4D3|LPXD_MAGSA UDP-3-O-acylglucosamine N-acyltransferase OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=lpxD PE=3 SV=1

 Score =  182 bits (461), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 99/231 (42%), Positives = 140/231 (60%), Gaps = 1/231 (0%)

Query: 15  QKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGF 74
           + W         SA +     IE GA++ + A +GA   IG+  V+G  V +G    IG 
Sbjct: 110 EPWVAPTAWVDASAAVGEGCRIEPGAVIGAGARIGARCRIGANVVIGQGVVLGDDCTIGA 169

Query: 75  NVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCID 134
           N  +S+ ++G    I+ G  IGQDGFGF +   G+ LK PQL    IGN+VEIGAN+ ID
Sbjct: 170 NATVSHALVGSRVNIYPGARIGQDGFGFAMGPQGH-LKVPQLGRVLIGNNVEIGANTTID 228

Query: 135 RGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDH 194
           RG+  DTVIGD S IDNLVQIGHNV +G+ C++  QVGI+GS  +GD+V  GG+  +  H
Sbjct: 229 RGAGPDTVIGDGSMIDNLVQIGHNVQLGRGCVIVAQVGISGSTRMGDFVAAGGQAGITGH 288

Query: 195 VSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRSSKKRT 245
           + I +  ++AA + V +DI      GG PAVP+ +W RQ A   + ++K++
Sbjct: 289 LKIGAGAKIAAQAGVMRDIAPGETVGGAPAVPMADWLRQSAILGKMARKKS 339

Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.

Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) (taxid: 342108)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	246
224078928	234	predicted protein [Populus trichocarpa]	0.943	0.991	0.831	1e-110
225444405	293	PREDICTED: UDP-3-O-[3-hydroxymyristoyl]	0.951	0.798	0.791	1e-108
302144058	289	unnamed protein product [Vitis vinifera]	0.951	0.809	0.791	1e-107
255555019	247	UDP-3-O-[3-hydroxymyristoyl] glucosamine	0.943	0.939	0.810	1e-106
356495807	312	PREDICTED: UDP-3-O-[3-hydroxymyristoyl]	0.963	0.759	0.759	1e-103
124359869	285	Trimeric LpxA-like [Medicago truncatula]	0.926	0.8	0.789	1e-101
297799948	303	bacterial transferase hexapeptide repeat	0.951	0.772	0.747	3e-99
449433924	285	PREDICTED: UDP-3-O-acylglucosamine N-acy	0.939	0.810	0.735	1e-97
42567003	304	trimeric LpxA-like protein [Arabidopsis	0.951	0.769	0.730	1e-97
357154632	288	PREDICTED: UDP-3-O-[3-hydroxymyristoyl]	0.971	0.829	0.711	3e-97

>gi|224078928|ref|XP_002305684.1| predicted protein [Populus trichocarpa] gi|222848648|gb|EEE86195.1| predicted protein [Populus trichocarpa]

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 193/232 (83%), Positives = 213/232 (91%)

Query: 12  QQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTN 71
           +++ KW+NGGG FH+SACID TVLIE+GA+VHSKAVLG NV +GSGTVVGP VTIG ST 
Sbjct: 1   EEYSKWNNGGGTFHKSACIDPTVLIEIGAVVHSKAVLGTNVHVGSGTVVGPEVTIGHSTK 60

Query: 72  IGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANS 131
           IG+NV LSNC IGDSC++H+GVCIGQDGFGFFVD+ GNM+KKPQLLNA IG+HVEIGAN+
Sbjct: 61  IGYNVGLSNCRIGDSCVVHHGVCIGQDGFGFFVDDKGNMMKKPQLLNAIIGDHVEIGANT 120

Query: 132 CIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAV 191
           CIDRGSWRDTVIGDHSK+DNLVQIGHNV IGK CMLCGQVGIAGS T+GDYVTLGGRVAV
Sbjct: 121 CIDRGSWRDTVIGDHSKLDNLVQIGHNVVIGKGCMLCGQVGIAGSVTMGDYVTLGGRVAV 180

Query: 192 RDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRSSKK 243
           RDHVSIASKVRLAANSCV KDI EPGDYGGFPAVPIHEWRRQVA++ R SKK
Sbjct: 181 RDHVSIASKVRLAANSCVTKDIREPGDYGGFPAVPIHEWRRQVASRYRISKK 232

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444405|ref|XP_002265427.1| PREDICTED: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase-like [Vitis vinifera]

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 186/235 (79%), Positives = 214/235 (91%), Gaps = 1/235 (0%)

Query: 10  SRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQS 69
           + Q+FQKWHNGGG+FH++ACI+ST LIE+GA+VHS+ V+ ANV IGSGT+VGPAV IG+S
Sbjct: 58  NHQEFQKWHNGGGMFHKTACIESTTLIEIGAVVHSECVVAANVHIGSGTIVGPAVKIGES 117

Query: 70  TNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGA 129
           T I +NV+++NC IGD+C IHNGVCIGQDGFGFFVDEHGNM+KK Q+L+ARIGNHVEIGA
Sbjct: 118 TKIEYNVSVTNCTIGDACFIHNGVCIGQDGFGFFVDEHGNMMKKAQMLSARIGNHVEIGA 177

Query: 130 NSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRV 189
           N+CIDRGSWRDTVIGDHSKIDNLVQIGHNV IGK+C+LCGQVGIAGS T+GDYVTL GRV
Sbjct: 178 NTCIDRGSWRDTVIGDHSKIDNLVQIGHNVVIGKNCILCGQVGIAGSVTMGDYVTLAGRV 237

Query: 190 AVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRSSKKR 244
           AVRDHVSI SKVRLAANS V KDI EPGDYGGFPAVPIHEWR+QVA  +++ KKR
Sbjct: 238 AVRDHVSIVSKVRLAANSVVTKDIKEPGDYGGFPAVPIHEWRKQVA-ALQTLKKR 291

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class: N/A

Phylum: Streptophyta

>gi|302144058|emb|CBI23163.3| unnamed protein product [Vitis vinifera]

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 186/235 (79%), Positives = 214/235 (91%), Gaps = 1/235 (0%)

Query: 10  SRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQS 69
           + Q+FQKWHNGGG+FH++ACI+ST LIE+GA+VHS+ V+ ANV IGSGT+VGPAV IG+S
Sbjct: 54  NHQEFQKWHNGGGMFHKTACIESTTLIEIGAVVHSECVVAANVHIGSGTIVGPAVKIGES 113

Query: 70  TNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGA 129
           T I +NV+++NC IGD+C IHNGVCIGQDGFGFFVDEHGNM+KK Q+L+ARIGNHVEIGA
Sbjct: 114 TKIEYNVSVTNCTIGDACFIHNGVCIGQDGFGFFVDEHGNMMKKAQMLSARIGNHVEIGA 173

Query: 130 NSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRV 189
           N+CIDRGSWRDTVIGDHSKIDNLVQIGHNV IGK+C+LCGQVGIAGS T+GDYVTL GRV
Sbjct: 174 NTCIDRGSWRDTVIGDHSKIDNLVQIGHNVVIGKNCILCGQVGIAGSVTMGDYVTLAGRV 233

Query: 190 AVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRSSKKR 244
           AVRDHVSI SKVRLAANS V KDI EPGDYGGFPAVPIHEWR+QVA  +++ KKR
Sbjct: 234 AVRDHVSIVSKVRLAANSVVTKDIKEPGDYGGFPAVPIHEWRKQVA-ALQTLKKR 287

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555019|ref|XP_002518547.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, putative [Ricinus communis] gi|223542392|gb|EEF43934.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, putative [Ricinus communis]

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/232 (81%), Positives = 206/232 (88%)

Query: 13  QFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNI 72
           +F KW NGGG+ H+S  ID T L+E+GA+VHSKA LGANV +GSG V+GP VT+GQST I
Sbjct: 14  EFSKWQNGGGVIHKSVHIDPTALVEIGAVVHSKAALGANVYVGSGAVIGPDVTVGQSTKI 73

Query: 73  GFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSC 132
           G+NV+L NC IGDSC+IHNGV IGQDGFGFFVDE G+M+KKPQLLNARIGNHVEIGAN+C
Sbjct: 74  GYNVSLRNCTIGDSCVIHNGVSIGQDGFGFFVDEQGSMVKKPQLLNARIGNHVEIGANTC 133

Query: 133 IDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVR 192
           IDRGSWRDTVIGDHSKIDNLVQIGHNV IGK+CMLCGQVGIAGS TIGDYVTLGGRVAVR
Sbjct: 134 IDRGSWRDTVIGDHSKIDNLVQIGHNVVIGKTCMLCGQVGIAGSVTIGDYVTLGGRVAVR 193

Query: 193 DHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRSSKKR 244
           DHVSIAS+VRLAANSCV KDI EPGDYGGFPAVPI EWRRQVA     SKK+
Sbjct: 194 DHVSIASRVRLAANSCVTKDIREPGDYGGFPAVPIREWRRQVAYCCWISKKK 245

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class: N/A

Phylum: Streptophyta

>gi|356495807|ref|XP_003516764.1| PREDICTED: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase-like [Glycine max]

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/237 (75%), Positives = 209/237 (88%)

Query: 4   YVSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPA 63
           +  D     +F KWHNGGG  H+SA IDST L+EVGA+VHS++++G NV IGSGT+VGP+
Sbjct: 41  FSEDGSVADKFHKWHNGGGTLHESASIDSTALVEVGAVVHSESIVGPNVRIGSGTIVGPS 100

Query: 64  VTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGN 123
           VTI  STNIG+NVALSNC IGDSC+IHNGVCIGQDGFGF+VD  GNM+KKPQ+LN  IGN
Sbjct: 101 VTIAHSTNIGYNVALSNCCIGDSCVIHNGVCIGQDGFGFYVDGDGNMIKKPQMLNVIIGN 160

Query: 124 HVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYV 183
           +VEIGAN+CIDRGSWRDTVIGD+SKIDNLVQIGHNV IGK+C+LCGQVGIAGSATIGDYV
Sbjct: 161 NVEIGANTCIDRGSWRDTVIGDNSKIDNLVQIGHNVVIGKNCLLCGQVGIAGSATIGDYV 220

Query: 184 TLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRS 240
           T+GGRVA+RDHVSI SKVRLAA SCV KDI EPGDYGGFPA+ IH+WRRQVA++ ++
Sbjct: 221 TMGGRVAIRDHVSIISKVRLAAASCVTKDIKEPGDYGGFPAISIHQWRRQVASRCQA 277

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class: N/A

Phylum: Streptophyta

>gi|124359869|gb|ABN06168.1| Trimeric LpxA-like [Medicago truncatula]

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 180/228 (78%), Positives = 203/228 (89%)

Query: 11  RQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQST 70
             +F+KW NGGGIFH+SACIDST  ++VGAIVHS++V+G+NV I SGTVVGP+V+I  ST
Sbjct: 53  EDKFKKWKNGGGIFHESACIDSTAFLDVGAIVHSESVVGSNVRIASGTVVGPSVSIAHST 112

Query: 71  NIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGAN 130
            IGFNV+LSNC IGDSC+IHNGVCIGQDGFGF+VD  G+M+KKPQ LN  IGN VEIGAN
Sbjct: 113 IIGFNVSLSNCSIGDSCVIHNGVCIGQDGFGFYVDGDGHMIKKPQKLNVIIGNGVEIGAN 172

Query: 131 SCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVA 190
           +CIDRGSWRDT IGD+SKIDNLVQIGHNV IGK+CMLCGQVGIAGSATIGDYVT+GGRVA
Sbjct: 173 TCIDRGSWRDTFIGDNSKIDNLVQIGHNVVIGKNCMLCGQVGIAGSATIGDYVTMGGRVA 232

Query: 191 VRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQI 238
           +RDHVSI SKVRLAA SCV KDITEPGDYGGFPAV IH+WRRQVA+  
Sbjct: 233 IRDHVSITSKVRLAALSCVTKDITEPGDYGGFPAVSIHKWRRQVASSF 280

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799948|ref|XP_002867858.1| bacterial transferase hexapeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297313694|gb|EFH44117.1| bacterial transferase hexapeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  367 bits (941), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 175/234 (74%), Positives = 199/234 (85%)

Query: 12  QQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTN 71
           + F +W NGGG  H SA IDS+ L+E GA+VH KAVLGA V +GSGTV+GP+V I  ST 
Sbjct: 70  EGFLRWRNGGGTCHSSALIDSSALVEFGAVVHEKAVLGAEVHVGSGTVIGPSVQISPSTR 129

Query: 72  IGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANS 131
           IG+NV+LSNC IGDSC+IHNGVCIGQDGFGF+VDEHGNM+KKPQ LN +IGN VEIGAN+
Sbjct: 130 IGYNVSLSNCSIGDSCVIHNGVCIGQDGFGFYVDEHGNMVKKPQKLNVKIGNRVEIGANT 189

Query: 132 CIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAV 191
           CIDRGSWRDTVI D +KIDNLVQIGHNV IGK C+LCGQVGIAGS TIGDYV LGGR AV
Sbjct: 190 CIDRGSWRDTVIEDDTKIDNLVQIGHNVIIGKCCLLCGQVGIAGSVTIGDYVALGGRAAV 249

Query: 192 RDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRSSKKRT 245
           RDHVSI SKVRLAANSCV K+ITEPGD+GGFPAVPIHEWR+Q+      +K++T
Sbjct: 250 RDHVSIVSKVRLAANSCVTKNITEPGDFGGFPAVPIHEWRKQIVRAQIVNKRKT 303

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433924|ref|XP_004134746.1| PREDICTED: UDP-3-O-acylglucosamine N-acyltransferase-like [Cucumis sativus] gi|449530480|ref|XP_004172223.1| PREDICTED: UDP-3-O-acylglucosamine N-acyltransferase-like [Cucumis sativus]

 Score =  361 bits (927), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 170/231 (73%), Positives = 200/231 (86%)

Query: 14  FQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIG 73
           F+ WHNGGG FH SA ID T ++E+GA+VHS +V+G +V IGSG+V+G AVTIGQST IG
Sbjct: 55  FRTWHNGGGTFHHSASIDPTAVVEIGAVVHSNSVVGPSVHIGSGSVIGHAVTIGQSTKIG 114

Query: 74  FNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCI 133
           FNVALSNC +GD C+IHNGVC+GQDGFGFFVDE G M KKPQ+LN +IG +VEIG+N+CI
Sbjct: 115 FNVALSNCNVGDFCVIHNGVCVGQDGFGFFVDEQGTMKKKPQMLNVKIGMNVEIGSNTCI 174

Query: 134 DRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRD 193
           DRGSWRDT+IG+++KIDNLVQIGHNV IG  C+LCGQVGIAGS TIGDYVTLGGRVA+RD
Sbjct: 175 DRGSWRDTIIGNNTKIDNLVQIGHNVIIGDCCLLCGQVGIAGSVTIGDYVTLGGRVAIRD 234

Query: 194 HVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRSSKKR 244
           HVS+ S VRLAA SCV KDI EPGDYGGFPA+PI  WRRQVA Q ++S+K+
Sbjct: 235 HVSVGSNVRLAALSCVTKDIKEPGDYGGFPAIPISAWRRQVAKQSQASRKK 285

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42567003|ref|NP_193854.2| trimeric LpxA-like protein [Arabidopsis thaliana] gi|332659029|gb|AEE84429.1| trimeric LpxA-like protein [Arabidopsis thaliana]

 Score =  361 bits (927), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 171/234 (73%), Positives = 199/234 (85%)

Query: 11  RQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQST 70
           ++ F +W NGGG  H SA I S+ L+E GA+VH KAVLGA V +GSGTV+GP+V IG ST
Sbjct: 70  KEGFLRWENGGGTCHSSAQIYSSALVEFGAVVHEKAVLGAEVHVGSGTVIGPSVDIGPST 129

Query: 71  NIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGAN 130
            IG+NV++SNC IGDSC+IHNGVCIGQDGFGF+VDEHGNM+KKPQ LN +IGN VEIGAN
Sbjct: 130 RIGYNVSISNCSIGDSCVIHNGVCIGQDGFGFYVDEHGNMVKKPQTLNVKIGNRVEIGAN 189

Query: 131 SCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVA 190
           +CIDRGSWR+TVI D +KIDNLVQIGHNV IGK C+LCGQVGIAGS TIGDYV LGGR A
Sbjct: 190 TCIDRGSWRETVIEDDTKIDNLVQIGHNVIIGKCCLLCGQVGIAGSVTIGDYVALGGRAA 249

Query: 191 VRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRSSKKR 244
           VRDHVSI SKVRLAANSCV ++ITEPGD+GGFPAVPIHEWR+Q+     ++K+ 
Sbjct: 250 VRDHVSIVSKVRLAANSCVTRNITEPGDFGGFPAVPIHEWRKQIVRAQIANKRE 303

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357154632|ref|XP_003576848.1| PREDICTED: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase-like [Brachypodium distachyon]

 Score =  360 bits (924), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 170/239 (71%), Positives = 201/239 (84%)

Query: 8   IESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIG 67
           I+S  +F  W NGGG+ H++A +D T ++E GA+VHS AVLG  V +GSGTV+GP+V++G
Sbjct: 48  IDSAAEFVPWRNGGGVMHRAASVDPTAVVEAGAVVHSGAVLGKEVVVGSGTVIGPSVSVG 107

Query: 68  QSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEI 127
            ST IG+NV LSNC +G+ C IHNG C+GQDGFGFFVDE G + KKPQ+L ARIG++VEI
Sbjct: 108 HSTRIGYNVVLSNCSVGEFCTIHNGACVGQDGFGFFVDEDGQIKKKPQVLYARIGDNVEI 167

Query: 128 GANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGG 187
           GAN+CIDRGSWRDT+IGD +KIDNLVQIGHNV IGK CM+CGQVGIAGSAT+GDYVTLGG
Sbjct: 168 GANTCIDRGSWRDTLIGDDTKIDNLVQIGHNVVIGKCCMICGQVGIAGSATLGDYVTLGG 227

Query: 188 RVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRSSKKRTS 246
           RVA+RDHVSIASKVRLAANS V KDI +PGDYGGFPAVPI+EWRRQ  N    SKK +S
Sbjct: 228 RVAIRDHVSIASKVRLAANSLVTKDIQKPGDYGGFPAVPINEWRRQTVNLRLFSKKHSS 286

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	246
TAIR|locus:2127423	304	LpxD2 "lipid X D2" [Arabidopsi	0.947	0.766	0.735	6.8e-95
TIGR_CMR|SO_1639	341	SO_1639 "UDP-3-O-(3-hydroxymyr	0.833	0.601	0.423	4.4e-36
UNIPROTKB|Q9KPW2	351	lpxD "UDP-3-O-acylglucosamine	0.898	0.629	0.398	4.4e-36
TIGR_CMR|VC_2250	351	VC_2250 "UDP-3-O-3-hydroxymyri	0.898	0.629	0.398	4.4e-36
TIGR_CMR|CBU_0613	342	CBU_0613 "UDP-3-O-[3-hydroxymy	0.865	0.622	0.387	7.2e-36
UNIPROTKB|P21645	341	lpxD [Escherichia coli K-12 (t	0.861	0.621	0.4	1.5e-35
TIGR_CMR|GSU_2266	347	GSU_2266 "UDP-3-O-3-hydroxymyr	0.926	0.657	0.387	5.1e-35
TIGR_CMR|CPS_1563	349	CPS_1563 "UDP-3-O-[3-hydroxymy	0.902	0.636	0.388	3.3e-31
TIGR_CMR|CJE_0679	321	CJE_0679 "UDP-3-O-(R-3-hydroxy	0.804	0.616	0.356	7.3e-27
TIGR_CMR|SPO_1930	363	SPO_1930 "UDP-3-O-3-hydroxymyr	0.772	0.523	0.340	1.1e-23

TAIR|locus:2127423 LpxD2 "lipid X D2" [Arabidopsis thaliana (taxid:3702)]

 Score = 944 (337.4 bits), Expect = 6.8e-95, P = 6.8e-95
 Identities = 172/234 (73%), Positives = 200/234 (85%)

Query:    11 RQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQST 70
             ++ F +W NGGG  H SA I S+ L+E GA+VH KAVLGA V +GSGTV+GP+V IG ST
Sbjct:    70 KEGFLRWENGGGTCHSSAQIYSSALVEFGAVVHEKAVLGAEVHVGSGTVIGPSVDIGPST 129

Query:    71 NIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGAN 130
              IG+NV++SNC IGDSC+IHNGVCIGQDGFGF+VDEHGNM+KKPQ LN +IGN VEIGAN
Sbjct:   130 RIGYNVSISNCSIGDSCVIHNGVCIGQDGFGFYVDEHGNMVKKPQTLNVKIGNRVEIGAN 189

Query:   131 SCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVA 190
             +CIDRGSWR+TVI D +KIDNLVQIGHNV IGK C+LCGQVGIAGS TIGDYV LGGR A
Sbjct:   190 TCIDRGSWRETVIEDDTKIDNLVQIGHNVIIGKCCLLCGQVGIAGSVTIGDYVALGGRAA 249

Query:   191 VRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVAN-QIRSSKK 243
             VRDHVSI SKVRLAANSCV ++ITEPGD+GGFPAVPIHEWR+Q+   QI + ++
Sbjct:   250 VRDHVSIVSKVRLAANSCVTRNITEPGDFGGFPAVPIHEWRKQIVRAQIANKRE 303

GO:0005737 "cytoplasm" evidence=ISM

GO:0016740 "transferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0043764 "UDP-3-O-[3-hydroxymyristoyl

GO:2001289 "lipid X metabolic process" evidence=IMP

TIGR_CMR|SO_1639 SO_1639 "UDP-3-O-(3-hydroxymyristoyl) glucosamine n-acyltransferase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 88/208 (42%), Positives = 121/208 (58%)

Query:    27 SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGD 85
             SA +   V I   A++ +  +LG NV IG+GTV+G    IG +T +  NV L  N  +G 
Sbjct:   109 SAQLGDGVAIGANAVIGANVILGENVQIGAGTVIGQDSIIGSNTRLWANVTLYHNVHLGQ 168

Query:    86 SCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGD 145
              CIIH+G  IG DGFG+  +E G  +K PQ    RIG+ VEIGANS IDRG+   T I +
Sbjct:   169 DCIIHSGAIIGSDGFGY-ANERGQWIKIPQTGGVRIGDRVEIGANSTIDRGALGHTEIHN 227

Query:   146 HSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA 205
                IDN VQ+ HN  IG++  + G   IAGS TIG +  +GG  A+  H++IA  V L+ 
Sbjct:   228 GVIIDNQVQVAHNDIIGENTAIAGSTTIAGSVTIGKHCIIGGNCAIAGHLTIADGVHLSG 287

Query:   206 NSCVFKDITEPGDYGGFP-AVPIHEWRR 232
              + V  ++ EPG Y     A+  + WR+
Sbjct:   288 ATNVTGNMREPGLYSSATVAMDNNLWRK 315

GO:0009245 "lipid A biosynthetic process" evidence=ISS

UNIPROTKB|Q9KPW2 lpxD "UDP-3-O-acylglucosamine N-acyltransferase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 90/226 (39%), Positives = 122/226 (53%)

Query:    23 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCI 82
             +  + A +   V I   A++ S   LG NV IG+G  +G    +G +T +  NV + + +
Sbjct:   105 VIAEDAKLGHNVSIGANAVIESGVQLGDNVVIGAGCFIGKQARLGDNTKLWANVTIYHKV 164

Query:    83 -IGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDT 141
              IG  C+I +G  IG DGFG+  +E G  +K PQL + RIG+ VEIGA + IDRG+  DT
Sbjct:   165 EIGSDCLIQSGTVIGADGFGY-ANERGEWIKIPQLGSVRIGDRVEIGACTTIDRGALDDT 223

Query:   142 VIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKV 201
             VI D+  IDN +QI HNV IG    L G   IAGS  IG Y  +GG   +  H+ IA  V
Sbjct:   224 VIEDNVIIDNQLQIAHNVHIGYGSALAGGTVIAGSTRIGKYCIIGGASVINGHIEIADGV 283

Query:   202 RLAANSCVFKDITEPGDYG-GFPAVPIHEWRRQVA--NQIRSSKKR 244
              +     V + I E G Y  G P     EWR+  A  ++I    KR
Sbjct:   284 TITGMGMVMRSIEEKGMYSSGIPLQTNKEWRKTAARVHRIDDMHKR 329

GO:0009245 "lipid A biosynthetic process" evidence=ISS

TIGR_CMR|VC_2250 VC_2250 "UDP-3-O-3-hydroxymyristoyl glucosamine N-acyltransferase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 90/226 (39%), Positives = 122/226 (53%)

Query:    23 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCI 82
             +  + A +   V I   A++ S   LG NV IG+G  +G    +G +T +  NV + + +
Sbjct:   105 VIAEDAKLGHNVSIGANAVIESGVQLGDNVVIGAGCFIGKQARLGDNTKLWANVTIYHKV 164

Query:    83 -IGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDT 141
              IG  C+I +G  IG DGFG+  +E G  +K PQL + RIG+ VEIGA + IDRG+  DT
Sbjct:   165 EIGSDCLIQSGTVIGADGFGY-ANERGEWIKIPQLGSVRIGDRVEIGACTTIDRGALDDT 223

Query:   142 VIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKV 201
             VI D+  IDN +QI HNV IG    L G   IAGS  IG Y  +GG   +  H+ IA  V
Sbjct:   224 VIEDNVIIDNQLQIAHNVHIGYGSALAGGTVIAGSTRIGKYCIIGGASVINGHIEIADGV 283

Query:   202 RLAANSCVFKDITEPGDYG-GFPAVPIHEWRRQVA--NQIRSSKKR 244
              +     V + I E G Y  G P     EWR+  A  ++I    KR
Sbjct:   284 TITGMGMVMRSIEEKGMYSSGIPLQTNKEWRKTAARVHRIDDMHKR 329

GO:0009245 "lipid A biosynthetic process" evidence=ISS

TIGR_CMR|CBU_0613 CBU_0613 "UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 86/222 (38%), Positives = 124/222 (55%)

Query:    21 GGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSN 80
             GGI H +A + +   I+  A + +  V+  +V IG  T++G   +IG+ + IG +  L +
Sbjct:   101 GGI-HPTAVVGANCQIDPSAHIGAHVVIEEDVVIGPRTLIGAGASIGRGSQIGSDCCLHS 159

Query:    81 CI-------IGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCI 133
              +       IGD  IIH+G  IG DGFG   DE G  +K PQ+    IG+ VEIGAN+ I
Sbjct:   160 RVTLYSQTRIGDRSIIHSGAVIGADGFGLIQDEKGEWVKIPQVGRVIIGDDVEIGANATI 219

Query:   134 DRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRD 193
             DRG+  DTVIG+  KID+LV I HNV IG   ++ G  G+AGS T+G +  +G    +  
Sbjct:   220 DRGALDDTVIGNGVKIDDLVMIAHNVRIGDHTVIAGCAGVAGSTTVGRHCMIGASAGLNG 279

Query:   194 HVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIH-EWRRQV 234
             H+ I   V +     + K IT+PG Y     +  + EWR+ V
Sbjct:   280 HIEICDNVIITGMGMIQKSITKPGIYSSGTGMQTNREWRKSV 321

GO:0009245 "lipid A biosynthetic process" evidence=ISS

UNIPROTKB|P21645 lpxD [Escherichia coli K-12 (taxid:83333)]

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 86/215 (40%), Positives = 120/215 (55%)

Query:    23 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCI 82
             +   +A + + V I   A++ S   LG NV IG+G  VG    IG  + +  NV + + I
Sbjct:   105 VIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYHEI 164

Query:    83 -IGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDT 141
              IG +C+I +G  +G DGFG+  ++ GN +K PQ+    IG+ VEIGA + IDRG+  DT
Sbjct:   165 QIGQNCLIQSGTVVGADGFGY-ANDRGNWVKIPQIGRVIIGDRVEIGACTTIDRGALDDT 223

Query:   142 VIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKV 201
             +IG+   IDN  QI HNV IG +  + G V +AGS  IG Y  +GG   +  H+ I  KV
Sbjct:   224 IIGNGVIIDNQCQIAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGHMEICDKV 283

Query:   202 RLAANSCVFKDITEPGDYG-GFPAVPIHEWRRQVA 235
              +     V + ITEPG Y  G P  P   WR+  A
Sbjct:   284 TVTGMGMVMRPITEPGVYSSGIPLQPNKVWRKTAA 318

GO:0016410 "N-acyltransferase activity" evidence=IDA

GO:0009245 "lipid A biosynthetic process" evidence=IEA;IMP

GO:0046677 "response to antibiotic" evidence=IEA

TIGR_CMR|GSU_2266 GSU_2266 "UDP-3-O-3-hydroxymyristoyl glucosamine N-acyltransferase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 91/235 (38%), Positives = 121/235 (51%)

Query:     2 LLYVSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVG 61
             L YV+   +R      H G     ++  + S + I  GA+V     +G  V +  G V+ 
Sbjct:    89 LFYVAPRAARGVMDGAHVG-----RNVKLGSEITIHPGAVVGDNVTIGDRVTLHPGVVLY 143

Query:    62 PAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNAR 120
               VT+G    +  NV +   C IG+   IH G  IG DGFG+  D  G   K PQL N  
Sbjct:   144 EGVTVGDDVTLHANVTVYQGCRIGNRVTIHGGTIIGSDGFGYAPDGDG-WYKIPQLGNVV 202

Query:   121 IGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIG 180
             I + VEIGAN+ IDR +   TVIG  +K+DNLV I HN  IG++CM+  QVGI+GS  +G
Sbjct:   203 IEDDVEIGANAAIDRAALASTVIGKGTKVDNLVMIAHNCVIGENCMIVSQVGISGSTKLG 262

Query:   181 DYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVA 235
               VTLGG+V V  H+ I     + A S V  ++       G PA    EW R  A
Sbjct:   263 RRVTLGGQVGVAGHLEIGDNAMIGAKSGVPGNVPSGTIMSGIPAFDHREWLRASA 317

GO:0009245 "lipid A biosynthetic process" evidence=ISS

GO:0016747 "transferase activity, transferring acyl groups other than amino-acyl groups" evidence=ISS

TIGR_CMR|CPS_1563 CPS_1563 "UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 91/234 (38%), Positives = 125/234 (53%)

Query:    22 GIFHQSACIDSTVLI----EVGA--IVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFN 75
             GI H +A I   VLI     VGA  ++ S   L  NV IG+G  +G    IG+ST +  N
Sbjct:   106 GI-HPNAVIADDVLIGENVSVGANTVIESGVQLADNVSIGAGCFIGHGAKIGESTILWAN 164

Query:    76 VALSNCI-IGDSCIIHNGVCIGQDGFGFF-VDEHGNMLKKPQLLNARIGNHVEIGANSCI 133
             + + + + IG  C+I     IG DGFG+  V       K PQL +  IG+HVEIGA++ I
Sbjct:   165 ITIYHRVEIGHHCLIQASTVIGSDGFGYAPVKGQYKWHKIPQLGSVIIGDHVEIGASTTI 224

Query:   134 DRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRD 193
             DRG+  +T I D   +DN +QI HNV +G++  + G   IAGS  IG   T+ G V V  
Sbjct:   225 DRGALDNTEIRDGVILDNQIQIAHNVIVGENTAIAGCTVIAGSTVIGKNCTIAGLVGVNG 284

Query:   194 HVSIASKVRLAANSCVFKDITEPGDYG-GFPAVPIHEWRRQVAN--QIRSSKKR 244
             H++IA        S V K+I++ G Y  G P V   EW +  A   ++ S  KR
Sbjct:   285 HITIADNCVFTGMSMVTKNISQAGVYSSGMPVVQNKEWNKTNARVKRLDSLTKR 338

GO:0009245 "lipid A biosynthetic process" evidence=ISS

TIGR_CMR|CJE_0679 CJE_0679 "UDP-3-O-(R-3-hydroxymyristoyl)-glucosamine N-acyltransferase" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 71/199 (35%), Positives = 110/199 (55%)

Query:    48 LGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCI-IGDSCIIHNGVCIGQDGFGFFVDE 106
             +G NV I +G  +G  V+IG  + I  NV + N   IG  C +     IG DGFG+  ++
Sbjct:   121 IGENVIIMAGAYIGDNVSIGDESIIHPNVVIYNDTKIGKKCHLLANCVIGSDGFGYAHNK 180

Query:   107 HGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCM 166
             +G   K     N  + + VE+GA + IDR  +  T+I   +K+DNLVQIGHN  IG++C+
Sbjct:   181 NGEHYKIYHNGNVVLEDFVEVGACTTIDRAVFDSTIIKAGTKVDNLVQIGHNCNIGQNCI 240

Query:   167 LCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVP 226
             +  Q GI+GS+ +G  V +GG+ A   H+ I     +AA   V K++     YGGFP + 
Sbjct:   241 IVAQTGISGSSELGRNVIMGGQSATSGHLKIGDFSTIAARGGVSKNLEGGRVYGGFPIML 300

Query:   227 IHEWRRQVANQIRSSKKRT 245
               +W +  A    + K+++
Sbjct:   301 QKDWLKLQAKIAINFKEKS 319

GO:0009245 "lipid A biosynthetic process" evidence=ISS

GO:0016410 "N-acyltransferase activity" evidence=ISS

TIGR_CMR|SPO_1930 SPO_1930 "UDP-3-O-3-hydroxymyristoyl glucosamine N-acyltransferase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 67/197 (34%), Positives = 99/197 (50%)

Query:    36 IEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFN-VALSNCIIG-DSCIIHNGV 93
             I  G+++    V+G +  +G G  +   V+IG    IG   +A     IG D        
Sbjct:   131 IGAGSVIGPHCVIGMDAVLGEGAWLREMVSIGARATIGARFIAQPGARIGGDGFSFVTPE 190

Query:    94 CIGQDGFGFFVDEHGNMLKKP----QLLNA-RIGNHVEIGANSCIDRGSWRDTVIGDHSK 148
               G +     + + G    +       L A  IG+ VE+GAN  +D G+ R+T IGD SK
Sbjct:   191 VSGAENARKTMGDQGEAKAQAWTRIHSLGAVEIGDDVEVGANCTVDNGTIRNTCIGDGSK 250

Query:   149 IDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSC 208
             +DNLV +GHN  IG+ C+LCGQ G++GS  IG+ V LGG+  V D++ I   V     S 
Sbjct:   251 LDNLVHVGHNTRIGRDCLLCGQTGVSGSVEIGNNVVLGGQTGVVDNIYIGDGVIAGGGSK 310

Query:   209 VFKDITEPGDYGGFPAV 225
             +  ++       G+PAV
Sbjct:   311 ILSNVPAGRVIMGYPAV 327

GO:0009245 "lipid A biosynthetic process" evidence=ISS

GO:0016410 "N-acyltransferase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
F4JIP6	LPXD2_ARATH	2, ., 3, ., 1, ., -	0.7307	0.9512	0.7697	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.3.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	246
PRK00892	343	PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] gluco	5e-90
cd03352	205	cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyl	7e-80
TIGR01853	324	TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristo	2e-77
COG1044	338	COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]	2e-71
cd03351	254	cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamin	6e-23
PRK05289	262	PRK05289, PRK05289, UDP-N-acetylglucosamine acyltr	3e-22
COG1043	260	COG1043, LpxA, Acyl-[acyl carrier protein]	3e-20
TIGR01852	254	TIGR01852, lipid_A_lpxA, acyl-[acyl-carrier-protei	4e-19
PRK12461	255	PRK12461, PRK12461, UDP-N-acetylglucosamine acyltr	1e-14
cd03360	197	cd03360, LbH_AT_putative, Putative Acyltransferase	6e-12
TIGR03570	193	TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sia	8e-11
COG1208	358	COG1208, GCD1, Nucleoside-diphosphate-sugar pyroph	2e-09
PRK10502	182	PRK10502, PRK10502, putative acyl transferase; Pro	2e-09
PRK14355	459	PRK14355, glmU, bifunctional N-acetylglucosamine-1	4e-09
TIGR01173	451	TIGR01173, glmU, UDP-N-acetylglucosamine diphospho	5e-09
PRK09451	456	PRK09451, glmU, bifunctional N-acetylglucosamine-1	2e-08
COG1208	358	COG1208, GCD1, Nucleoside-diphosphate-sugar pyroph	9e-08
cd05825	107	cd05825, LbH_wcaF_like, wcaF-like: This group is c	1e-07
cd03358	119	cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed p	4e-07
PRK14360	450	PRK14360, glmU, bifunctional N-acetylglucosamine-1	8e-07
cd03360	197	cd03360, LbH_AT_putative, Putative Acyltransferase	2e-06
COG1207	460	COG1207, GlmU, N-acetylglucosamine-1-phosphate uri	2e-06
TIGR03570	193	TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sia	3e-06
TIGR02091	361	TIGR02091, glgC, glucose-1-phosphate adenylyltrans	4e-06
COG1045	194	COG1045, CysE, Serine acetyltransferase [Amino aci	4e-06
cd03354	101	cd03354, LbH_SAT, Serine acetyltransferase (SAT):	4e-06
cd03353	193	cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosph	4e-06
COG0448	393	COG0448, GlgC, ADP-glucose pyrophosphorylase [Carb	6e-06
PRK14354	458	PRK14354, glmU, bifunctional N-acetylglucosamine-1	8e-06
cd00710	167	cd00710, LbH_gamma_CA, Gamma carbonic anhydrases (	2e-05
COG2171	271	COG2171, DapD, Tetrahydrodipicolinate N-succinyltr	2e-05
PRK14357	448	PRK14357, glmU, bifunctional N-acetylglucosamine-1	2e-05
cd04651	104	cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenyly	3e-05
cd05636	163	cd05636, LbH_G1P_TT_C_like, Putative glucose-1-pho	5e-05
PRK05293	380	PRK05293, glgC, glucose-1-phosphate adenylyltransf	9e-05
cd04647	109	cd04647, LbH_MAT_like, Maltose O-acyltransferase (	9e-05
COG0663	176	COG0663, PaaY, Carbonic anhydrases/acetyltransfera	1e-04
COG0110	190	COG0110, WbbJ, Acetyltransferase (isoleucine patch	2e-04
TIGR03992	393	TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diph	2e-04
COG1045	194	COG1045, CysE, Serine acetyltransferase [Amino aci	4e-04
cd00208	78	cd00208, LbetaH, Left-handed parallel beta-Helix (	5e-04
cd04646	164	cd04646, LbH_Dynactin_6, Dynactin 6 (or subunit p2	6e-04
cd03356	79	cd03356, LbH_G1P_AT_C_like, Left-handed parallel b	6e-04
TIGR03992	393	TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diph	7e-04
cd03359	161	cd03359, LbH_Dynactin_5, Dynactin 5 (or subunit p2	7e-04
cd00208	78	cd00208, LbetaH, Left-handed parallel beta-Helix (	0.001
cd04645	153	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydra	0.001
cd00208	78	cd00208, LbetaH, Left-handed parallel beta-Helix (	0.002
TIGR03532	231	TIGR03532, DapD_Ac, 2,3,4,5-tetrahydropyridine-2,6	0.002
pfam00132	36	pfam00132, Hexapep, Bacterial transferase hexapept	0.002
cd00710	167	cd00710, LbH_gamma_CA, Gamma carbonic anhydrases (	0.003
cd03359	161	cd03359, LbH_Dynactin_5, Dynactin 5 (or subunit p2	0.003
cd03358	119	cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed p	0.004
cd03356	79	cd03356, LbH_G1P_AT_C_like, Left-handed parallel b	0.004
cd04745	155	cd04745, LbH_paaY_like, paaY-like: This group is c	0.004
PLN02739	355	PLN02739, PLN02739, serine acetyltransferase	0.004

>gnl|CDD|234858 PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

 Score =  268 bits (689), Expect = 5e-90
 Identities = 100/213 (46%), Positives = 125/213 (58%), Gaps = 3/213 (1%)

Query: 25  HQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCII 83
             SA I   V I   A++ +  V+G  V IG+G V+G  V IG    +  NV +     I
Sbjct: 110 DPSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRI 169

Query: 84  GDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVI 143
           G+  IIH+G  IG DGFGF  ++ G  +K PQL    IG+ VEIGAN+ IDRG+  DTVI
Sbjct: 170 GNRVIIHSGAVIGSDGFGF-ANDRGGWVKIPQLGRVIIGDDVEIGANTTIDRGALDDTVI 228

Query: 144 GDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL 203
           G+  KIDNLVQI HNV IG+   +  QVGIAGS  IG Y  +GG+V +  H+ I   V +
Sbjct: 229 GEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVGIAGHLEIGDGVTI 288

Query: 204 AANSCVFKDITEPGDY-GGFPAVPIHEWRRQVA 235
            A S V K I EPG+Y  G PA P  EW R  A
Sbjct: 289 TAMSGVTKSIPEPGEYSSGIPAQPNKEWLRTAA 321

Length = 343

>gnl|CDD|100043 cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

 Score =  238 bits (609), Expect = 7e-80
 Identities = 100/206 (48%), Positives = 123/206 (59%), Gaps = 2/206 (0%)

Query: 27  SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGD 85
           SA I   V I   A++    V+G  V IG G V+G  V IG    I  NV +   CIIGD
Sbjct: 1   SAKIGENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGD 60

Query: 86  SCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGD 145
             IIH+G  IG DGFGF   + G  +K PQL    IG+ VEIGAN+ IDRG+  DTVIGD
Sbjct: 61  RVIIHSGAVIGSDGFGF-APDGGGWVKIPQLGGVIIGDDVEIGANTTIDRGALGDTVIGD 119

Query: 146 HSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA 205
            +KIDNLVQI HNV IG++C++  QVGIAGS TIGD V +GG+V +  H++I   V + A
Sbjct: 120 GTKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVIIGGQVGIAGHLTIGDGVVIGA 179

Query: 206 NSCVFKDITEPGDYGGFPAVPIHEWR 231
            S V   +       G PA P  EW 
Sbjct: 180 GSGVTSIVPPGEYVSGTPAQPHREWL 205

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Length = 205

>gnl|CDD|233599 TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

 Score =  236 bits (603), Expect = 2e-77
 Identities = 96/212 (45%), Positives = 125/212 (58%), Gaps = 1/212 (0%)

Query: 25  HQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCII 83
             SA I   V I    ++ +   +G NV IG G V+G  V IG  + I  NV +     +
Sbjct: 101 DPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQL 160

Query: 84  GDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVI 143
           G + IIH+G  IG DGFG+    +G  +K PQ+    I + VEIGAN+ IDRG++ DT+I
Sbjct: 161 GKNVIIHSGAVIGSDGFGYAHTANGGHVKIPQIGRVIIEDDVEIGANTTIDRGAFDDTII 220

Query: 144 GDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL 203
           G+ +KIDNLVQI HN  IG++C++  QVGIAGS  IG  V +GG+V V  H+ I   V +
Sbjct: 221 GEGTKIDNLVQIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIGDNVTI 280

Query: 204 AANSCVFKDITEPGDYGGFPAVPIHEWRRQVA 235
            A S V K I  PG YGG PA P  EW R  A
Sbjct: 281 GAKSGVTKSIPPPGVYGGIPARPNKEWLRIAA 312

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 324

>gnl|CDD|223974 COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]

 Score =  221 bits (565), Expect = 2e-71
 Identities = 106/224 (47%), Positives = 136/224 (60%), Gaps = 2/224 (0%)

Query: 22  GIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SN 80
            +   +A I   V I    ++ +  V+G NV IG+G V+G  V IG  T I  NV +  N
Sbjct: 106 AVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHN 165

Query: 81  CIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRD 140
            +IG++ IIH+G  IG DGFG+     G  +K PQ+    IG+ VEIGAN+ IDRG+  D
Sbjct: 166 VVIGNNVIIHSGAVIGADGFGYAGTAIG-WVKIPQIGRVIIGDDVEIGANTTIDRGALDD 224

Query: 141 TVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASK 200
           TVIG+  KIDNLVQIGHNV IG+ C++ GQVGIAGS  IG YV +GG+V +  H+ I   
Sbjct: 225 TVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQVGIAGHLEIGDG 284

Query: 201 VRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRSSKKR 244
           V + A S V   ITEPG  GG PA PI EW +  A   R  + R
Sbjct: 285 VTIGARSGVMASITEPGYSGGIPAQPIKEWLKTAALIRRLPEMR 328

Length = 338

>gnl|CDD|100042 cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

 Score = 93.3 bits (233), Expect = 6e-23
 Identities = 55/185 (29%), Positives = 79/185 (42%), Gaps = 26/185 (14%)

Query: 40  AIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQD 98
           AIV   A +G NV IG   V+GP V IG  T IG +V +     IG +  I     IG+ 
Sbjct: 6   AIVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEA 65

Query: 99  GFGFFVDEHGNMLKKPQLLNAR-------IGNHVEIGANSCIDRGSWRD---TVIGDHSK 148
                          PQ L  +       IG++  I     I RG+ +    T IG+++ 
Sbjct: 66  ---------------PQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQGGGVTRIGNNNL 110

Query: 149 IDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSC 208
           +   V + H+  IG + +L     +AG   IGDY  +GG  AV     I     +   S 
Sbjct: 111 LMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGGSG 170

Query: 209 VFKDI 213
           V +D+
Sbjct: 171 VVQDV 175

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. Length = 254

>gnl|CDD|235390 PRK05289, PRK05289, UDP-N-acetylglucosamine acyltransferase; Provisional

 Score = 91.7 bits (229), Expect = 3e-22
 Identities = 56/185 (30%), Positives = 83/185 (44%), Gaps = 26/185 (14%)

Query: 40  AIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQD 98
           AIV   A +G NV IG   V+GP V IG  T IG +V +  +  IG +  I     IG+D
Sbjct: 9   AIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGED 68

Query: 99  GFGFFVDEHGNMLKKPQLLNAR-------IGNHVEIGANSCIDRGSWRD---TVIGDHSK 148
                          PQ L  +       IG++  I     I+RG+ +    T IGD++ 
Sbjct: 69  ---------------PQDLKYKGEPTRLVIGDNNTIREFVTINRGTVQGGGVTRIGDNNL 113

Query: 149 IDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSC 208
           +   V + H+  +G   +L     +AG   +GDY  +GG  AV   V I +   +   S 
Sbjct: 114 LMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQFVRIGAHAMVGGMSG 173

Query: 209 VFKDI 213
           V +D+
Sbjct: 174 VSQDV 178

Length = 262

>gnl|CDD|223973 COG1043, LpxA, Acyl-[acyl carrier protein]

 Score = 86.1 bits (214), Expect = 3e-20
 Identities = 56/207 (27%), Positives = 85/207 (41%), Gaps = 26/207 (12%)

Query: 31  DSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCII 89
                I   AI+   A +G +V IG   ++GP V IG  T +  +V +  +  IG +  I
Sbjct: 1   MKMAKIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRI 60

Query: 90  HNGVCIGQDGFGFFVDEHGNMLKKPQLLNAR-------IGNHVEIGANSCIDRGSWRD-- 140
                IG+D               PQ L  +       IG++  I     I RG+ +   
Sbjct: 61  FPFASIGED---------------PQDLKYKGEPTRLIIGDNNTIREFVTIHRGTVQGGG 105

Query: 141 -TVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIAS 199
            T IGD++ I     + H+  IG +C+L     +AG   +GDY  +GG  AV   V I +
Sbjct: 106 VTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLSAVHQFVRIGA 165

Query: 200 KVRLAANSCVFKDITEPGDYGGFPAVP 226
              +   S V +D+       G  A  
Sbjct: 166 HAMIGGLSAVSQDVPPYVIASGNHARL 192

Length = 260

>gnl|CDD|188173 TIGR01852, lipid_A_lpxA, acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

 Score = 83.1 bits (206), Expect = 4e-19
 Identities = 55/199 (27%), Positives = 79/199 (39%), Gaps = 26/199 (13%)

Query: 40  AIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQD 98
           AI+   A +G NV IG   +VGP V IG    +  +V +  +  IG+   I  G  IG  
Sbjct: 5   AIIEPGAEIGENVEIGPFCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGV 64

Query: 99  GFGFFVDEHGNMLKKPQLLN-------ARIGNHVEIGANSCIDRGSWRD---TVIGDHSK 148
                          PQ L          IG++  I     I+RG+      T IG+++ 
Sbjct: 65  ---------------PQDLKYKGEKTRLIIGDNNTIREFVTINRGTASGGGVTRIGNNNL 109

Query: 149 IDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSC 208
           +     I H+  +G   +L     +AG   +GDY  +GG VAV   V I     +   S 
Sbjct: 110 LMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIGRYAMIGGLSA 169

Query: 209 VFKDITEPGDYGGFPAVPI 227
           V KD+       G  A   
Sbjct: 170 VSKDVPPYCLAEGNRARLR 188

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 254

>gnl|CDD|183539 PRK12461, PRK12461, UDP-N-acetylglucosamine acyltransferase; Provisional

 Score = 70.8 bits (174), Expect = 1e-14
 Identities = 56/197 (28%), Positives = 80/197 (40%), Gaps = 33/197 (16%)

Query: 25  HQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIG 84
           H +A ID +  +  G  +   AV+GANV IG GT +GP   I   T IG N         
Sbjct: 3   HPTAVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKN--------- 53

Query: 85  DSCIIHNGVCIGQD--GFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTV 142
               IH G  +G +   F +          K +     IG+   I     I RG+    V
Sbjct: 54  --NKIHQGAVVGDEPQDFTY----------KGEESRLEIGDRNVIREGVTIHRGTKGGGV 101

Query: 143 --IGDHSKIDNL----VQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVS 196
             IG+    DNL      + H+  IG + +L     +AG  T+GD   + G   V     
Sbjct: 102 TRIGN----DNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCR 157

Query: 197 IASKVRLAANSCVFKDI 213
           I +   +A  S + KD+
Sbjct: 158 IGALAMMAGGSRISKDV 174

Length = 255

>gnl|CDD|100050 cd03360, LbH_AT_putative, Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

 Score = 62.1 bits (152), Expect = 6e-12
 Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 2/107 (1%)

Query: 119 ARIGNHVEIGANSCIDRGSW--RDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGS 176
           A +     IG    I  G+    D  IGD+  I+    IGH+  IG    +   V ++G 
Sbjct: 91  AVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGG 150

Query: 177 ATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFP 223
            TIG+   +G    +   V+I +   + A + V KD+ +     G P
Sbjct: 151 VTIGEGAFIGAGATIIQGVTIGAGAIIGAGAVVTKDVPDGSVVVGNP 197

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. Length = 197

>gnl|CDD|234265 TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

 Score = 59.1 bits (144), Expect = 8e-11
 Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 4/107 (3%)

Query: 118 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSA 177
           +A IG    I A + I+     D  IGD+  I+    + H+  IG    +   V ++G  
Sbjct: 90  SASIGEGTVIMAGAVINP----DVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGV 145

Query: 178 TIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPA 224
            IG+ V +G    +   V+I +   + A + V KDI + G   G PA
Sbjct: 146 VIGEGVFIGAGATIIQGVTIGAGAVVGAGAVVTKDIPDGGVVVGVPA 192

This family of proteins includes the characterized NeuD sialic acid O-acetyltransferase enzymes from E. coli and Streptococcus agalactiae (group B strep). These two are quite closely related to one another, so extension of this annotation to other members of the family in unsupported without additional independent evidence. The neuD gene is often observed in close proximity to the neuABC genes for the biosynthesis of CMP-N-acetylneuraminic acid (CMP-sialic acid), and NeuD sequences from these organisms were used to construct the seed for this model. Nevertheless, there are numerous instances of sequences identified by this model which are observed in a different genomic context (although almost universally in exopolysaccharide biosynthesis-related loci), as well as in genomes for which the biosynthesis of sialic acid (SA) is undemonstrated. Even in the cases where the association with SA biosynthesis is strong, it is unclear in the literature whether the biological substrate is SA iteself, CMP-SA, or a polymer containing SA. Similarly, it is unclear to what extent the enzyme has a preference for acetylation at the 7, 8 or 9 positions. In the absence of evidence of association with SA, members of this family may be involved with the acetylation of differring sugar substrates, or possibly the delivery of alternative acyl groups. The closest related sequences to this family (and those used to root the phylogenetic tree constructed to create this model) are believed to be succinyltransferases involved in lysine biosynthesis. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. Length = 193

>gnl|CDD|224129 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 37/150 (24%), Positives = 56/150 (37%), Gaps = 32/150 (21%)

Query: 16  KWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFN 75
              +  G   +   I  +  I    ++   A +G    IG  TV+G  VTIG    I   
Sbjct: 238 DGKSPLGPIEEPVVIIRSAYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEI--- 294

Query: 76  VALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDR 135
               N II D+ +I +G  IG                     ++ IG + +IGA+  I  
Sbjct: 295 ---KNSIIMDNVVIGHGSYIG---------------------DSIIGENCKIGASLII-- 328

Query: 136 GSWRDTVIGDHSKIDNLVQIGHNVAIGKSC 165
               D VIG +S+I   V +G    +    
Sbjct: 329 ---GDVVIGINSEILPGVVVGPGSVVESGE 355

Length = 358

>gnl|CDD|236703 PRK10502, PRK10502, putative acyl transferase; Provisional

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 39/132 (29%), Positives = 51/132 (38%), Gaps = 21/132 (15%)

Query: 116 LLNARIGNHVEIGANSCIDRGSWRDTV-----IGDHSKIDNL--VQIGHNVAIGKSCMLC 168
           L  A+IG  V I  +  I    W+ T+     IGD   + NL  + IG +  I +   LC
Sbjct: 49  LFGAKIGKGVVIRPSVRI-TYPWKLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLC 107

Query: 169 GQVG-----------IAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPG 217
              G                 IG+   L   V V   V+I S   + A S VFK +    
Sbjct: 108 T--GSHDYSDPHFDLNTAPIVIGEGCWLAADVFVAPGVTIGSGAVVGARSSVFKSLPANT 165

Query: 218 DYGGFPAVPIHE 229
              G PAVPI  
Sbjct: 166 ICRGNPAVPIRP 177

Length = 182

>gnl|CDD|237685 PRK14355, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 55.9 bits (135), Expect = 4e-09
 Identities = 49/204 (24%), Positives = 72/204 (35%), Gaps = 54/204 (26%)

Query: 33  TVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNG 92
           T  I+ G ++     +   VCI   T +G   TI Q       V +  C IGD   +  G
Sbjct: 262 TTYIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQ------GVVIKGCRIGDDVTVKAG 315

Query: 93  VCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNL 152
                                  L ++ +G+ V IG  + +  G    T +  H KI N 
Sbjct: 316 SV---------------------LEDSVVGDDVAIGPMAHLRPG----TELSAHVKIGNF 350

Query: 153 VQ----------------------IGHNVAIGKSCMLCGQVGIAGSAT-IGDYVTLGGRV 189
           V+                      IG NV IG   + C   G+    T I D V +G  V
Sbjct: 351 VETKKIVMGEGSKASHLTYLGDATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDV 410

Query: 190 AVRDHVSIASKVRLAANSCVFKDI 213
                V++     +AA + V KD+
Sbjct: 411 QFVAPVTVGRNSLIAAGTTVTKDV 434

Length = 459

>gnl|CDD|233299 TIGR01173, glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

 Score = 55.7 bits (135), Expect = 5e-09
 Identities = 55/196 (28%), Positives = 76/196 (38%), Gaps = 38/196 (19%)

Query: 30  IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCII 89
           I   V I+   I+  K  +G +V IG G V+  +V IG +  I     L    IG+ C +
Sbjct: 264 IGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSV-IGSNVVIKAYSVLEGSEIGEGCDV 322

Query: 90  HNGVCIGQDGFGFFVDEH---GNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDH 146
                      G F       G++L         IGN VE            ++  IG  
Sbjct: 323 -----------GPFA--RLRPGSVLGA----GVHIGNFVET-----------KNARIGKG 354

Query: 147 SKIDNL-----VQIGHNVAIGKSCMLCGQVGIAGSAT-IGDYVTLGGRVAVRDHVSIASK 200
           SK  +L      +IG NV IG   + C   G     T IGD V +G    +   V +   
Sbjct: 355 SKAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAPVKVGDG 414

Query: 201 VRLAANSCVFKDITEP 216
             +AA S V KD+ E 
Sbjct: 415 ATIAAGSTVTKDVPEG 430

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Central intermediary metabolism, Amino sugars]. Length = 451

>gnl|CDD|181867 PRK09451, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 57/212 (26%), Positives = 80/212 (37%), Gaps = 41/212 (19%)

Query: 34  VLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIH--- 90
           V I+   I+     LG  V IG+G V                  L NC+IGD C I    
Sbjct: 272 VEIDTNVIIEGNVTLGNRVKIGAGCV------------------LKNCVIGDDCEISPYS 313

Query: 91  --NGVCIGQD-GFGFFVD-EHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRD--TVIG 144
                 +G     G F     G  L +     A +GN VE+   + + +GS     T +G
Sbjct: 314 VVEDANLGAACTIGPFARLRPGAELAE----GAHVGNFVEM-KKARLGKGSKAGHLTYLG 368

Query: 145 DHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSAT-IGDYVTLGGRVAVRDHVSIASKVRL 203
           D        +IG NV IG   + C   G     T IGD V +G    +   V++     +
Sbjct: 369 D-------AEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATI 421

Query: 204 AANSCVFKDITEPG-DYGGFPAVPIHEWRRQV 234
            A + V +D+ E        P   I  W+R V
Sbjct: 422 GAGTTVTRDVAENELVISRVPQRHIQGWQRPV 453

Length = 456

>gnl|CDD|224129 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

 Score = 51.6 bits (124), Expect = 9e-08
 Identities = 40/154 (25%), Positives = 56/154 (36%), Gaps = 27/154 (17%)

Query: 44  SKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFF 103
           ++ +L  +     G +  P V I  +  IG  V      IG   +I     IG+      
Sbjct: 231 NELLLRGDGKSPLGPIEEPVVIIRSAYIIGPVVIGPGAKIGPGALIGPYTVIGE------ 284

Query: 104 VDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGK 163
                            IGN VEI  NS I      + VIG  S I + + IG N  IG 
Sbjct: 285 --------------GVTIGNGVEIK-NSII----MDNVVIGHGSYIGDSI-IGENCKIGA 324

Query: 164 SCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI 197
           S ++ G V I  ++ I   V +G    V      
Sbjct: 325 SLII-GDVVIGINSEILPGVVVGPGSVVESGEIE 357

Length = 358

>gnl|CDD|100063 cd05825, LbH_wcaF_like, wcaF-like: This group is composed of the protein product of the E

 Score = 48.0 bits (115), Expect = 1e-07
 Identities = 33/117 (28%), Positives = 44/117 (37%), Gaps = 25/117 (21%)

Query: 124 HVEIGANSCIDRGSWRDTVIGDHSKIDNL--VQIGHNVAIGKSCMLCGQVG--------- 172
           ++ IG NS I          G+   I NL  V IG +  I +   LC   G         
Sbjct: 3   NLTIGDNSWI----------GEGVWIYNLAPVTIGSDACISQGAYLCT--GSHDYRSPAF 50

Query: 173 --IAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI 227
             I     IGD   +     V   V+I     + A S V +D+     Y G PAVP+
Sbjct: 51  PLITAPIVIGDGAWVAAEAFVGPGVTIGEGAVVGARSVVVRDLPAWTVYAGNPAVPV 107

coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms. Length = 107

>gnl|CDD|100048 cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

 Score = 47.1 bits (113), Expect = 4e-07
 Identities = 29/122 (23%), Positives = 43/122 (35%), Gaps = 19/122 (15%)

Query: 121 IGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIA------ 174
           IG++  IG N  I+     D  IGD+ KI + V I   V I     +   V         
Sbjct: 1   IGDNCIIGTNVFIE----NDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPR 56

Query: 175 ---------GSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAV 225
                       T+    ++G    +   V+I     + A + V KD+       G PA 
Sbjct: 57  SKIYRKWELKGTTVKRGASIGANATILPGVTIGEYALVGAGAVVTKDVPPYALVVGNPAR 116

Query: 226 PI 227
            I
Sbjct: 117 II 118

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. Length = 119

>gnl|CDD|184646 PRK14360, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 49.2 bits (118), Expect = 8e-07
 Identities = 61/215 (28%), Positives = 96/215 (44%), Gaps = 45/215 (20%)

Query: 15  QKWHNGGGIFHQ--SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNI 72
           +KW   G  F    S  I  TV +    I+  +  L  N  IGSG  +GP   I +++ I
Sbjct: 242 EKWMLAGVTFIDPASCTISETVELGPDVIIEPQTHLRGNTVIGSGCRIGPGSLI-ENSQI 300

Query: 73  GFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQL-LNARIGNHVEIGANS 131
           G NV +   ++ DS  I +GV IG          + ++  + Q+  N RIGN VEI    
Sbjct: 301 GENVTVLYSVVSDS-QIGDGVKIG---------PYAHLRPEAQIGSNCRIGNFVEI---- 346

Query: 132 CIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGI-AGSAT------------ 178
                  + + +G+ SK+++L  IG +  +G+      QV I AG+ T            
Sbjct: 347 -------KKSQLGEGSKVNHLSYIG-DATLGE------QVNIGAGTITANYDGVKKHRTV 392

Query: 179 IGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDI 213
           IGD    G    +   +++   V +AA S + KD+
Sbjct: 393 IGDRSKTGANSVLVAPITLGEDVTVAAGSTITKDV 427

Length = 450

>gnl|CDD|100050 cd03360, LbH_AT_putative, Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

 Score = 47.1 bits (113), Expect = 2e-06
 Identities = 31/143 (21%), Positives = 53/143 (37%), Gaps = 32/143 (22%)

Query: 5   VSDIESRQQFQKWHNGGG-----IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIG---- 55
           + D + R++  +     G     + H SA +  + +I  G ++ + AV+  +  IG    
Sbjct: 63  IGDNKLRRKLAEKLLAAGYRFATLIHPSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVI 122

Query: 56  --SGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLK 112
             +G V+G    IG   +I   V LS    IG+   I  G  I                 
Sbjct: 123 INTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATI----------------- 165

Query: 113 KPQLLNARIGNHVEIGANSCIDR 135
              +    IG    IGA + + +
Sbjct: 166 IQGV---TIGAGAIIGAGAVVTK 185

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. Length = 197

>gnl|CDD|224128 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

 Score = 47.9 bits (115), Expect = 2e-06
 Identities = 52/192 (27%), Positives = 74/192 (38%), Gaps = 26/192 (13%)

Query: 30  IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCII 89
           I   V I    ++    +L  N  IG   V+GP   I  S  IG N  +    + +   +
Sbjct: 265 IRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSV-IGDNAVIKAYSVIEGSTV 323

Query: 90  HNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKI 149
             G  +G     F     G +L      +  IGN VE+           +   IG  SK 
Sbjct: 324 GEGATVGP----FARLRPGAVLGA----DVHIGNFVEV-----------KKATIGKGSKA 364

Query: 150 DNL-----VQIGHNVAIGKSCMLCGQVGIAGSAT-IGDYVTLGGRVAVRDHVSIASKVRL 203
            +L      +IG NV IG   + C   G     T IGD V +G    +   V+I     +
Sbjct: 365 GHLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQLVAPVTIGDGATI 424

Query: 204 AANSCVFKDITE 215
           AA S + KD+ E
Sbjct: 425 AAGSTITKDVPE 436

Length = 460

>gnl|CDD|234265 TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

 Score = 46.0 bits (110), Expect = 3e-06
 Identities = 28/128 (21%), Positives = 45/128 (35%), Gaps = 37/128 (28%)

Query: 23  IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCI 82
           + H SA +  +  I  G ++ + AV+  +V IG   ++     +             +C+
Sbjct: 80  LIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEH-----------DCV 128

Query: 83  IGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTV 142
           IGD   I  GV +   G                     IG  V IGA + I        V
Sbjct: 129 IGDYVHIAPGVTLS--G------------------GVVIGEGVFIGAGATI-----IQGV 163

Query: 143 -IGDHSKI 149
            IG  + +
Sbjct: 164 TIGAGAVV 171

This family of proteins includes the characterized NeuD sialic acid O-acetyltransferase enzymes from E. coli and Streptococcus agalactiae (group B strep). These two are quite closely related to one another, so extension of this annotation to other members of the family in unsupported without additional independent evidence. The neuD gene is often observed in close proximity to the neuABC genes for the biosynthesis of CMP-N-acetylneuraminic acid (CMP-sialic acid), and NeuD sequences from these organisms were used to construct the seed for this model. Nevertheless, there are numerous instances of sequences identified by this model which are observed in a different genomic context (although almost universally in exopolysaccharide biosynthesis-related loci), as well as in genomes for which the biosynthesis of sialic acid (SA) is undemonstrated. Even in the cases where the association with SA biosynthesis is strong, it is unclear in the literature whether the biological substrate is SA iteself, CMP-SA, or a polymer containing SA. Similarly, it is unclear to what extent the enzyme has a preference for acetylation at the 7, 8 or 9 positions. In the absence of evidence of association with SA, members of this family may be involved with the acetylation of differring sugar substrates, or possibly the delivery of alternative acyl groups. The closest related sequences to this family (and those used to root the phylogenetic tree constructed to create this model) are believed to be succinyltransferases involved in lysine biosynthesis. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. Length = 193

>gnl|CDD|233720 TIGR02091, glgC, glucose-1-phosphate adenylyltransferase

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 6/78 (7%)

Query: 23  IFHQSACIDSTVLIEVGAIVH----SKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL 78
                A +  +++ E G I+     S +VLG  V IGSG+ V  +V +G    IG    +
Sbjct: 285 FVDSDAQVVDSLVSE-GCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGDVG-IGRGAVI 342

Query: 79  SNCIIGDSCIIHNGVCIG 96
            N II  +  I  GV IG
Sbjct: 343 RNAIIDKNVRIGEGVVIG 360

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 361

>gnl|CDD|223975 COG1045, CysE, Serine acetyltransferase [Amino acid transport and metabolism]

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 19/96 (19%)

Query: 54  IGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKK 113
           I  G  +G  + I   T +   V     +IGD   I++GV +G  G       H      
Sbjct: 70  IHPGAKIGRGLFIDHGTGV---VIGETAVIGDDVTIYHGVTLGGTG-KESGKRH------ 119

Query: 114 PQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKI 149
                  IGN V IGA + I      +  IGD++KI
Sbjct: 120 -----PTIGNGVYIGAGAKI----LGNIEIGDNAKI 146

Length = 194

>gnl|CDD|100045 cd03354, LbH_SAT, Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine

 Score = 44.0 bits (105), Expect = 4e-06
 Identities = 31/96 (32%), Positives = 42/96 (43%), Gaps = 19/96 (19%)

Query: 54  IGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKK 113
           I  G  +GP + I   T I   V     +IGD+C I+ GV +G  G G     H      
Sbjct: 5   IHPGAKIGPGLFIDHGTGI---VIGETAVIGDNCTIYQGVTLGGKGKG-GGKRH------ 54

Query: 114 PQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKI 149
                  IG++V IGA + I      +  IGD+ KI
Sbjct: 55  -----PTIGDNVVIGAGAKI----LGNITIGDNVKI 81

This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain. Length = 101

>gnl|CDD|100044 cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

 Score = 45.5 bits (109), Expect = 4e-06
 Identities = 51/200 (25%), Positives = 73/200 (36%), Gaps = 40/200 (20%)

Query: 30  IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCII 89
           ID  V I V  ++    +L     IG   V+GP   I             +  IGD  +I
Sbjct: 12  IDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIK------------DSTIGDGVVI 59

Query: 90  HNGVCIGQDGFGFFVD-------EHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTV 142
                I     G             G +L +       IGN VEI           + + 
Sbjct: 60  KASSVIEGAVIGNGATVGPFAHLRPGTVLGE----GVHIGNFVEI-----------KKST 104

Query: 143 IGDHSKIDNL-----VQIGHNVAIGKSCMLCGQVGIAGSAT-IGDYVTLGGRVAVRDHVS 196
           IG+ SK ++L      +IG  V IG   + C   G+    T IGD V +G    +   V+
Sbjct: 105 IGEGSKANHLSYLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAPVT 164

Query: 197 IASKVRLAANSCVFKDITEP 216
           I     +AA S + KD+   
Sbjct: 165 IGDGATIAAGSTITKDVPPG 184

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. Length = 193

>gnl|CDD|223525 COG0448, GlgC, ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 39  GAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQD 98
           G + +S  VL   V IG G+V+  +V I     IG    L   II  + +I  GV IG D
Sbjct: 307 GTVENS--VLFRGVRIGKGSVIENSV-IMPDVEIGEGAVLRRAIIDKNVVIGEGVVIGGD 363

Length = 393

>gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 46.0 bits (110), Expect = 8e-06
 Identities = 49/205 (23%), Positives = 82/205 (40%), Gaps = 46/205 (22%)

Query: 30  ID-STVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCI 88
           ID  +  I+    + S  V+   V I   TV+G    IG  + I       +  IGD   
Sbjct: 255 IDPESTYIDADVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRI------VDSTIGDGVT 308

Query: 89  IHNGVCIGQDGFGFFVDEH-----------GNMLKKPQLLNARIGNHVEIGANSCIDRGS 137
           I N V          V ++           G+++ +      +IGN VEI          
Sbjct: 309 ITNSVIEESK-----VGDNVTVGPFAHLRPGSVIGE----EVKIGNFVEI---------- 349

Query: 138 WRDTVIGDHSKIDNLVQIGHNVAIGKSCML-CGQV-----GIAGSAT-IGDYVTLGGRVA 190
            + + IG+ +K+ +L  IG +  +G++  + CG +     G     T IGD   +G    
Sbjct: 350 -KKSTIGEGTKVSHLTYIG-DAEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNSN 407

Query: 191 VRDHVSIASKVRLAANSCVFKDITE 215
           +   V++     +AA S + KD+ E
Sbjct: 408 LVAPVTVGDNAYIAAGSTITKDVPE 432

Length = 458

>gnl|CDD|100039 cd00710, LbH_gamma_CA, Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 8/82 (9%)

Query: 30  IDSTVLIEVGAIVHSKA----VLGANVCIGSGTVV-GPAVTIGQSTNIGFNVALSNCIIG 84
           I + V I+ G ++H+       +G NV I  G +V GPA  IG +  IGF   + N  +G
Sbjct: 45  IGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPA-YIGDNCFIGFRSVVFNAKVG 103

Query: 85  DSCII-HNGVCIGQDGF-GFFV 104
           D+C+I HN V  G +   G +V
Sbjct: 104 DNCVIGHNAVVDGVEIPPGRYV 125

They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. Length = 167

>gnl|CDD|225082 COG2171, DapD, Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 9/80 (11%)

Query: 28  ACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVG--------PAVTIGQSTNIGFN-VAL 78
           A      +++  A V S A +G N  IG G  +G          V IG +  IG N   +
Sbjct: 139 AGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIGANSEVV 198

Query: 79  SNCIIGDSCIIHNGVCIGQD 98
              I+GD C++  GV I QD
Sbjct: 199 EGVIVGDGCVVAAGVFITQD 218

Length = 271

>gnl|CDD|237687 PRK14357, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 51/192 (26%), Positives = 74/192 (38%), Gaps = 27/192 (14%)

Query: 30  IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSC-- 87
           I   V I +  I++    +     IG    +GP   I     IG NV     II   C  
Sbjct: 252 IHYDVEIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRIVDC-EIGNNVK----IIRSECEK 306

Query: 88  -IIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRD--TVIG 144
            +I + V +G     F     G +LKK    + +IGN VEI   S I   +     T +G
Sbjct: 307 SVIEDDVSVGP----FSRLREGTVLKK----SVKIGNFVEI-KKSTIGENTKAQHLTYLG 357

Query: 145 DHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSAT-IGDYVTLGGRVAVRDHVSIASKVRL 203
           D         +G NV IG   + C   G   + T I D   +G   ++   V I     +
Sbjct: 358 D-------ATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAPVRIGKGALI 410

Query: 204 AANSCVFKDITE 215
            A S + +D+  
Sbjct: 411 GAGSVITEDVPP 422

Length = 448

>gnl|CDD|100056 cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

 Score = 41.7 bits (99), Expect = 3e-05
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 7/77 (9%)

Query: 36  IEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCI 95
           I  G + +S  VL   V +GSG+VV  +V I  +  IG N  +   II  + +I +GV I
Sbjct: 21  ISGGTVENS--VLFRGVRVGSGSVVEDSV-IMPNVGIGRNAVIRRAIIDKNVVIPDGVVI 77

Query: 96  G----QDGFGFFVDEHG 108
           G    +D   F+V E G
Sbjct: 78  GGDPEEDRARFYVTEDG 94

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. Length = 104

>gnl|CDD|100060 cd05636, LbH_G1P_TT_C_like, Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains

 Score = 42.2 bits (100), Expect = 5e-05
 Identities = 41/151 (27%), Positives = 56/151 (37%), Gaps = 39/151 (25%)

Query: 30  IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGP------AVTIGQSTNIGFNVALSNCII 83
           I   V I  GAIV S A +   V IG G  +GP         +G    +G +V + N II
Sbjct: 14  IKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSII 73

Query: 84  ------------GDSCIIHNGVCIGQ---------DGFGFFVDEHGNM----LKKPQLLN 118
                       GDS ++   V +G          D     V   G       +K   L 
Sbjct: 74  MDGTKVPHLNYVGDS-VLGENVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRK---LG 129

Query: 119 ARIGNHVEIGANSCIDRGSWRDTVIGDHSKI 149
           A IG+ V+ G N  ++ G      IG  S +
Sbjct: 130 AIIGDGVKTGINVSLNPG----VKIGPGSWV 156

Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 163

>gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional

 Score = 42.5 bits (101), Expect = 9e-05
 Identities = 30/96 (31%), Positives = 41/96 (42%), Gaps = 19/96 (19%)

Query: 39  GAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQD 98
           G + HS  VL   V +G G+VV  +V I     IG NV +   IIG++ +I +GV IG  
Sbjct: 304 GTVEHS--VLFQGVQVGEGSVVKDSV-IMPGAKIGENVVIERAIIGENAVIGDGVIIGGG 360

Query: 99  GFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCID 134
                V                IG +  IG  + I 
Sbjct: 361 KEVITV----------------IGENEVIGVGTVIG 380

Length = 380

>gnl|CDD|100053 cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins

 Score = 40.5 bits (96), Expect = 9e-05
 Identities = 32/123 (26%), Positives = 43/123 (34%), Gaps = 27/123 (21%)

Query: 118 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCG-------- 169
           N  IG++V IG    I  G                + IG NV IG +  +          
Sbjct: 1   NISIGDNVYIGPGCVISAG--------------GGITIGDNVLIGPNVTIYDHNHDIDDP 46

Query: 170 -----QVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPA 224
                Q   +    IGD V +G  V +   V+I     + A S V KD+       G PA
Sbjct: 47  ERPIEQGVTSAPIVIGDDVWIGANVVILPGVTIGDGAVVGAGSVVTKDVPPNSIVAGNPA 106

Query: 225 VPI 227
             I
Sbjct: 107 KVI 109

MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form. Length = 109

>gnl|CDD|223735 COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 36/127 (28%), Positives = 49/127 (38%), Gaps = 31/127 (24%)

Query: 30  IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVT---IGQSTNIGFNVALSNCII--- 83
           ID T  +   A V     +GA V I  G V+   V    IG  TNI         +I   
Sbjct: 14  IDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNI-----QDGVVIHAD 68

Query: 84  -GDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTV 142
            G    I + V IG          HG ++         IG++V IG  + +  G+    V
Sbjct: 69  PGYPVTIGDDVTIG----------HGAVVH-----GCTIGDNVLIGMGATVLDGA----V 109

Query: 143 IGDHSKI 149
           IGD S +
Sbjct: 110 IGDGSIV 116

Length = 176

>gnl|CDD|223188 COG0110, WbbJ, Acetyltransferase (isoleucine patch superfamily) [General function prediction only]

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 39/166 (23%), Positives = 61/166 (36%), Gaps = 17/166 (10%)

Query: 71  NIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGAN 130
           +  FNVA     +G          I     G  + E   +  +P +       ++ IG  
Sbjct: 22  DGAFNVAGKPVKLG------RYAEILGRLVGIKIGEVAVI--RPPVRIDLGEKNLTIGDL 73

Query: 131 SCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLC-------GQVGIAGSATIGDYV 183
             I        ++G+   I + V +G NV I  +           G +  AG  TIG+ V
Sbjct: 74  CFIGVN--VVILVGEGITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDV 131

Query: 184 TLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHE 229
            +G    +   V+I     + A S V KD+   G   G PA  I +
Sbjct: 132 WIGAGAVILPGVTIGEGAVIGAGSVVTKDVPPYGIVAGNPARVIRK 177

Length = 190

>gnl|CDD|234433 TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 40/155 (25%), Positives = 57/155 (36%), Gaps = 43/155 (27%)

Query: 28  ACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGP------AVTIGQSTNIGFNVALSNC 81
             I   V+I  GA++ S   +   V IG    +GP         IG + +IG  V + N 
Sbjct: 243 VTIKGPVVIGEGAVIRSGTYIEGPVYIGKNCDIGPNAYIRPYTVIGNNVHIGNAVEIKNS 302

Query: 82  II------------GDSCIIHNGVCIGQDGFGF--------FVDEHGNMLKKPQL----- 116
           II            GDS I  N  C     FG           D+   +  K +      
Sbjct: 303 IIMEGTKIPHLSYVGDSVIGEN--C----NFGAGTKVANLRHDDKPVKVTVKGKRVDTGR 356

Query: 117 --LNARIGNHVEIGANSCIDRGSWRDTVIGDHSKI 149
             L A +G+ V+ G N  I+ G      IG  ++I
Sbjct: 357 RKLGAIVGDGVKTGINVSINPG----VKIGSGARI 387

The MJ_1101 protein from Methanococcus jannaschii has been characterized as the GlmU enzyme catalyzing the final two steps of UDP-GlcNAc biosynthesis. Many of the genes identified by this model are in proximity to the GlmS and GlmM genes and are also presumed to be GlmU. However, some archaeal genomes contain multiple closely-related homologs from this family and it is not clear what the substrate specificity is for each of them. Length = 393

>gnl|CDD|223975 COG1045, CysE, Serine acetyltransferase [Amino acid transport and metabolism]

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 10/114 (8%)

Query: 116 LLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAG 175
           L    I    +IG    ID G+    VIG+ + I + V I H V +G      G    +G
Sbjct: 65  LFGIEIHPGAKIGRGLFIDHGT--GVVIGETAVIGDDVTIYHGVTLG------GTGKESG 116

Query: 176 SA--TIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI 227
               TIG+ V +G    +  ++ I    ++ A S V KD+       G PA  I
Sbjct: 117 KRHPTIGNGVYIGAGAKILGNIEIGDNAKIGAGSVVLKDVPPNATVVGVPARVI 170

Length = 194

>gnl|CDD|100038 cd00208, LbetaH, Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

 Score = 37.6 bits (88), Expect = 5e-04
 Identities = 27/103 (26%), Positives = 36/103 (34%), Gaps = 27/103 (26%)

Query: 54  IGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKK 113
           IG G  + P   I               +IGD+  I  G  IG            N    
Sbjct: 3   IGEGVKIHPKAVIR-----------GPVVIGDNVNIGPGAVIGAAT-------GPNEKNP 44

Query: 114 PQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIG 156
                  IG++VEIGAN+ I  G      IGD++ I     + 
Sbjct: 45  TI-----IGDNVEIGANAVIHGG----VKIGDNAVIGAGAVVT 78

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. Length = 78

>gnl|CDD|100052 cd04646, LbH_Dynactin_6, Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 38/140 (27%), Positives = 56/140 (40%), Gaps = 33/140 (23%)

Query: 36  IEVGAIVHSKAVLGANVCIGSGTVVGPAVTI-GQSTNIGFNVALSNCIIGDSCIIHNGVC 94
           I  GA+V  ++ +  +V IG GTVV P  TI  ++  I         IIG++ II   V 
Sbjct: 2   IAPGAVVCQESEIRGDVTIGPGTVVHPRATIIAEAGPI---------IIGENNIIEEQVT 52

Query: 95  IGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTV-IGD------HS 147
           I                KKP   +      + IG+N+  + G   + + IG+       S
Sbjct: 53  IVN--------------KKP--KDPAEPKPMIIGSNNVFEVGCKCEALKIGNNNVFESKS 96

Query: 148 KIDNLVQIGHNVAIGKSCML 167
            +   V I     IG  C L
Sbjct: 97  FVGKNVIITDGCIIGAGCKL 116

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 164

>gnl|CDD|100046 cd03356, LbH_G1P_AT_C_like, Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

 Score = 37.2 bits (87), Expect = 6e-04
 Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 26/100 (26%)

Query: 66  IGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHV 125
           IG+ST IG N  + N +IGD+  I +GV I                      N+ + ++V
Sbjct: 2   IGESTVIGENAIIKNSVIGDNVRIGDGVTIT---------------------NSILMDNV 40

Query: 126 EIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSC 165
            IGANS I      D++IGD++ I   V++ +   IG   
Sbjct: 41  TIGANSVI-----VDSIIGDNAVIGENVRVVNLCIIGDDV 75

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 79

>gnl|CDD|234433 TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

 Score = 39.9 bits (94), Expect = 7e-04
 Identities = 46/199 (23%), Positives = 72/199 (36%), Gaps = 75/199 (37%)

Query: 36  IEVGAIVHSKAVLGANVCIGSGTVV-GPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVC 94
           +E    +    V+G    I SGT + GP   IG+           NC IG +  I     
Sbjct: 239 VEENVTIKGPVVIGEGAVIRSGTYIEGPVY-IGK-----------NCDIGPNAYIRPYTV 286

Query: 95  IGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQ 154
           IG                     N  IGN VEI           ++++I + +KI +L  
Sbjct: 287 IGN--------------------NVHIGNAVEI-----------KNSIIMEGTKIPHLSY 315

Query: 155 IGHNVAIGKSCML-CG-------------QVGIAGS----------ATIGDYVTLGGRVA 190
           +G +V IG++C    G             +V + G           A +GD V  G    
Sbjct: 316 VGDSV-IGENCNFGAGTKVANLRHDDKPVKVTVKGKRVDTGRRKLGAIVGDGVKTG---- 370

Query: 191 VRDHVSIASKVRLAANSCV 209
              +VSI   V++ + + +
Sbjct: 371 --INVSINPGVKIGSGARI 387

The MJ_1101 protein from Methanococcus jannaschii has been characterized as the GlmU enzyme catalyzing the final two steps of UDP-GlcNAc biosynthesis. Many of the genes identified by this model are in proximity to the GlmS and GlmM genes and are also presumed to be GlmU. However, some archaeal genomes contain multiple closely-related homologs from this family and it is not clear what the substrate specificity is for each of them. Length = 393

>gnl|CDD|100049 cd03359, LbH_Dynactin_5, Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

 Score = 38.7 bits (91), Expect = 7e-04
 Identities = 19/68 (27%), Positives = 24/68 (35%), Gaps = 2/68 (2%)

Query: 23  IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSN-C 81
           I  +   I          +      +G  V IG   VV  A  IG   +IG N  +   C
Sbjct: 50  ILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVV-NAAQIGSYVHIGKNCVIGRRC 108

Query: 82  IIGDSCII 89
           II D   I
Sbjct: 109 IIKDCVKI 116

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 161

>gnl|CDD|100038 cd00208, LbetaH, Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 9/72 (12%)

Query: 34 VLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIG--------QSTNIGFNVAL-SNCIIG 84
          V I  G  +H KAV+   V IG    +GP   IG          T IG NV + +N +I 
Sbjct: 1  VFIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIH 60

Query: 85 DSCIIHNGVCIG 96
              I +   IG
Sbjct: 61 GGVKIGDNAVIG 72

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. Length = 78

>gnl|CDD|100051 cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

 Score = 38.2 bits (90), Expect = 0.001
 Identities = 34/126 (26%), Positives = 47/126 (37%), Gaps = 33/126 (26%)

Query: 30  IDSTVLIEVGAIVHSKAVLGANVCIGSGTV----VGPAVTIGQSTNIGFNVALSNCII-- 83
           ID +  I   A V     LG    +  G V    V P + IG+ TNI         ++  
Sbjct: 2   IDPSAFIAPNATVIGDVTLGEGSSVWFGAVLRGDVNP-IRIGERTNIQ-----DGSVLHV 55

Query: 84  --GDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDT 141
             G   II + V +G          HG +L         IG++  IG  + I  G+    
Sbjct: 56  DPGYPTIIGDNVTVG----------HGAVLH-----GCTIGDNCLIGMGAIILDGA---- 96

Query: 142 VIGDHS 147
           VIG  S
Sbjct: 97  VIGKGS 102

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. Length = 153

>gnl|CDD|100038 cd00208, LbetaH, Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

 Score = 35.7 bits (83), Expect = 0.002
 Identities = 18/76 (23%), Positives = 25/76 (32%), Gaps = 8/76 (10%)

Query: 142 VIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAG--------SATIGDYVTLGGRVAVRD 193
            IG+  KI     I   V IG +  +     I             IGD V +G    +  
Sbjct: 2   FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHG 61

Query: 194 HVSIASKVRLAANSCV 209
            V I     + A + V
Sbjct: 62  GVKIGDNAVIGAGAVV 77

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. Length = 78

>gnl|CDD|132571 TIGR03532, DapD_Ac, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 20/143 (13%)

Query: 117 LNARIG------NHVEIGANSCIDRGSWRD--TVIGDHSKIDNLVQIGHNVAIGKSCMLC 168
           +NARI       + V IG N+ I  G+  +    IG+ + ID    +G    +GK+  + 
Sbjct: 85  INARIEPGAIIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIG 144

Query: 169 GQVGIAG-----SA---TIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYG 220
               +AG     SA    I D V +G    + + V +     +AA + V +D+       
Sbjct: 145 AGAVLAGVIEPPSAKPVVIEDNVLIGANAVILEGVRVGKGAVVAAGAIVTEDVPPNTVVA 204

Query: 221 GFPAVPIHEWRRQVANQIRSSKK 243
           G PA  I    +QV  + +   +
Sbjct: 205 GVPAKVI----KQVDEKTKDKTE 223

This enzyme is part of the diaminopimelate pathway of lysine biosynthesis. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate. Length = 231

>gnl|CDD|189409 pfam00132, Hexapep, Bacterial transferase hexapeptide (six repeats)

 Score = 34.3 bits (80), Expect = 0.002
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query: 140 DTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAG 175
            TVIG++  I   V IG  V IG + ++   V I G
Sbjct: 1   GTVIGENVLIGPNVVIGGGVIIGDNVIIGAGVVIGG 36

Length = 36

>gnl|CDD|100039 cd00710, LbH_gamma_CA, Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 32/126 (25%)

Query: 25  HQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVV----GPAVTIGQSTNIGFNVAL-- 78
             SA +  T      A+V    ++G NV +G G  +    G  + IG + NI   V +  
Sbjct: 6   DPSAYVHPT------AVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHA 59

Query: 79  ---------SNCIIGDSCIIHNGVCIGQDGF-GFFVDEHGNMLKKPQLLNARIGNHVEIG 128
                     N  I    I+H    IG + F GF          +  + NA++G++  IG
Sbjct: 60  LEGYSVWIGKNVSIAHGAIVHGPAYIGDNCFIGF----------RSVVFNAKVGDNCVIG 109

Query: 129 ANSCID 134
            N+ +D
Sbjct: 110 HNAVVD 115

They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. Length = 167

>gnl|CDD|100049 cd03359, LbH_Dynactin_5, Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 33/163 (20%), Positives = 47/163 (28%), Gaps = 52/163 (31%)

Query: 80  NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCI------ 133
           N ++    II + V I            G+      L    IG +  +     I      
Sbjct: 21  NIVLNGKTIIQSDVII-----------RGD------LATVSIGRYCILSEGCVIRPPFKK 63

Query: 134 --DRGSWRDTVIGDHSKID-----NLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLG 186
                ++    IGD+  I      N  QIG  V IGK+C             IG    + 
Sbjct: 64  FSKGVAFFPLHIGDYVFIGENCVVNAAQIGSYVHIGKNC------------VIGRRCIIK 111

Query: 187 GRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHE 229
             V + D   +     +   S             G PA  I E
Sbjct: 112 DCVKILDGTVVPPDTVIPPYS----------VVSGRPARFIGE 144

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 161

>gnl|CDD|100048 cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

 Score = 35.9 bits (84), Expect = 0.004
 Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 8/88 (9%)

Query: 48  LGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGF-GFFVD 105
           +G N  IG+   +   V IG +  I  NV++     I D   I   V    D +    + 
Sbjct: 1   IGDNCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRSKIY 60

Query: 106 EHGNMLKKPQLLNARIGNHVEIGANSCI 133
               +          +     IGAN+ I
Sbjct: 61  RKWELKG------TTVKRGASIGANATI 82

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. Length = 119

>gnl|CDD|100046 cd03356, LbH_G1P_AT_C_like, Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

 Score = 34.9 bits (81), Expect = 0.004
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)

Query: 30 IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCII 89
          I  + +I   AI+   +V+G NV IG G  +  ++ +  +  IG N  + + IIGD+ +I
Sbjct: 2  IGESTVIGENAIIK-NSVIGDNVRIGDGVTITNSI-LMDNVTIGANSVIVDSIIGDNAVI 59

Query: 90 HNGV 93
             V
Sbjct: 60 GENV 63

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 79

>gnl|CDD|100058 cd04745, LbH_paaY_like, paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 11/112 (9%)

Query: 36  IEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCI 95
           ++  + VH  AVL  +V IG    +GP  ++    + G  V      + D+C+IH     
Sbjct: 3   VDPSSFVHPTAVLIGDVIIGKNCYIGPHASL--RGDFGRIVIRDGANVQDNCVIH----- 55

Query: 96  GQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHS 147
           G  G    ++E+G++     L    IG +  +G N+ +  G+    VIG+ S
Sbjct: 56  GFPGQDTVLEENGHIGHGAILHGCTIGRNALVGMNAVVMDGA----VIGEES 103

coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity. Length = 155

>gnl|CDD|215394 PLN02739, PLN02739, serine acetyltransferase

 Score = 37.7 bits (87), Expect = 0.004
 Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 6/98 (6%)

Query: 127 IGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLG 186
           IG    +D G+    VIG+ + I + V I H V +G +    G         IGD   LG
Sbjct: 214 IGKGILLDHGT--GVVIGETAVIGDRVSILHGVTLGGTGKETGD----RHPKIGDGALLG 267

Query: 187 GRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPA 224
             V +  ++SI +   +AA S V KD+       G PA
Sbjct: 268 ACVTILGNISIGAGAMVAAGSLVLKDVPSHSMVAGNPA 305

Length = 355

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	246
TIGR01853	324	lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam	100.0
COG1044	338	LpxD UDP-3-O-[3-hydroxymyristoyl]	100.0
PRK00892	343	lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac	100.0
PRK12461	255	UDP-N-acetylglucosamine acyltransferase; Provision	100.0
cd03352	205	LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas	100.0
COG1043	260	LpxA Acyl-[acyl carrier protein]	100.0
PRK05289	262	UDP-N-acetylglucosamine acyltransferase; Provision	100.0
cd03351	254	LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr	99.97
TIGR01852	254	lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac	99.97
cd03353	193	LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl	99.96
TIGR01173	451	glmU UDP-N-acetylglucosamine diphosphorylase/gluco	99.95
cd03351	254	LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr	99.95
PRK09451	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.95
COG1207	460	GlmU N-acetylglucosamine-1-phosphate uridyltransfe	99.94
PRK14355	459	glmU bifunctional N-acetylglucosamine-1-phosphate	99.94
PRK14352	482	glmU bifunctional N-acetylglucosamine-1-phosphate	99.94
PRK14360	450	glmU bifunctional N-acetylglucosamine-1-phosphate	99.93
COG1043	260	LpxA Acyl-[acyl carrier protein]	99.93
TIGR01852	254	lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac	99.92
PRK14356	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.92
COG1044	338	LpxD UDP-3-O-[3-hydroxymyristoyl]	99.92
PRK14357	448	glmU bifunctional N-acetylglucosamine-1-phosphate	99.92
PRK14353	446	glmU bifunctional N-acetylglucosamine-1-phosphate	99.92
PRK14354	458	glmU bifunctional N-acetylglucosamine-1-phosphate	99.92
PRK14358	481	glmU bifunctional N-acetylglucosamine-1-phosphate	99.91
PRK05289	262	UDP-N-acetylglucosamine acyltransferase; Provision	99.91
PRK14359	430	glmU bifunctional N-acetylglucosamine-1-phosphate	99.91
PRK12461	255	UDP-N-acetylglucosamine acyltransferase; Provision	99.91
TIGR01853	324	lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam	99.9
PRK00892	343	lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac	99.89
cd03352	205	LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas	99.87
COG0663	176	PaaY Carbonic anhydrases/acetyltransferases, isole	99.85
cd05636	163	LbH_G1P_TT_C_like Putative glucose-1-phosphate thy	99.85
TIGR03308	204	phn_thr-fam phosphonate metabolim protein, transfe	99.84
TIGR03532	231	DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla	99.84
PRK13627	196	carnitine operon protein CaiE; Provisional	99.82
cd03350	139	LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d	99.82
cd03353	193	LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl	99.82
TIGR01173	451	glmU UDP-N-acetylglucosamine diphosphorylase/gluco	99.81
PRK14353	446	glmU bifunctional N-acetylglucosamine-1-phosphate	99.81
PLN02296	269	carbonate dehydratase	99.8
PRK09527	203	lacA galactoside O-acetyltransferase; Reviewed	99.79
cd04745	155	LbH_paaY_like paaY-like: This group is composed by	99.79
COG1207	460	GlmU N-acetylglucosamine-1-phosphate uridyltransfe	99.78
cd04646	164	LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact	99.78
PRK14358	481	glmU bifunctional N-acetylglucosamine-1-phosphate	99.77
PRK10502	182	putative acyl transferase; Provisional	99.77
PLN02472	246	uncharacterized protein	99.76
PRK14355	459	glmU bifunctional N-acetylglucosamine-1-phosphate	99.76
PRK14352	482	glmU bifunctional N-acetylglucosamine-1-phosphate	99.76
COG0663	176	PaaY Carbonic anhydrases/acetyltransferases, isole	99.76
cd04646	164	LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact	99.76
cd00710	167	LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo	99.75
TIGR02287	192	PaaY phenylacetic acid degradation protein PaaY. M	99.75
PRK09451	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.75
PRK14357	448	glmU bifunctional N-acetylglucosamine-1-phosphate	99.74
TIGR00965	269	dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate	99.74
PRK14359	430	glmU bifunctional N-acetylglucosamine-1-phosphate	99.74
PRK14356	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.73
PRK14354	458	glmU bifunctional N-acetylglucosamine-1-phosphate	99.73
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	99.73
PRK14360	450	glmU bifunctional N-acetylglucosamine-1-phosphate	99.73
cd03358	119	LbH_WxcM_N_like WcxM-like, Left-handed parallel be	99.72
PRK09677	192	putative lipopolysaccharide biosynthesis O-acetyl	99.72
PRK10092	183	maltose O-acetyltransferase; Provisional	99.72
cd03357	169	LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and	99.72
PRK11830	272	dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-	99.72
cd04645	153	LbH_gamma_CA_like Gamma carbonic anhydrase-like: T	99.71
cd03360	197	LbH_AT_putative Putative Acyltransferase (AT), Lef	99.71
cd03359	161	LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact	99.71
cd04650	154	LbH_FBP Ferripyochelin Binding Protein (FBP): FBP	99.7
cd04745	155	LbH_paaY_like paaY-like: This group is composed by	99.7
TIGR02353	695	NRPS_term_dom non-ribosomal peptide synthetase ter	99.7
TIGR00965	269	dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate	99.69
cd04650	154	LbH_FBP Ferripyochelin Binding Protein (FBP): FBP	99.69
cd05825	107	LbH_wcaF_like wcaF-like: This group is composed of	99.69
cd05636	163	LbH_G1P_TT_C_like Putative glucose-1-phosphate thy	99.68
cd03350	139	LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d	99.68
cd00710	167	LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo	99.67
COG0110	190	WbbJ Acetyltransferase (isoleucine patch superfami	99.66
TIGR03532	231	DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla	99.66
cd04645	153	LbH_gamma_CA_like Gamma carbonic anhydrase-like: T	99.66
TIGR02287	192	PaaY phenylacetic acid degradation protein PaaY. M	99.66
PRK11132	273	cysE serine acetyltransferase; Provisional	99.65
PRK13627	196	carnitine operon protein CaiE; Provisional	99.63
PLN02739	355	serine acetyltransferase	99.63
PLN02472	246	uncharacterized protein	99.63
PLN02694	294	serine O-acetyltransferase	99.62
cd03359	161	LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact	99.62
PRK11830	272	dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-	99.62
TIGR01172	162	cysE serine O-acetyltransferase. Cysteine biosynth	99.61
KOG4750	269	consensus Serine O-acetyltransferase [Amino acid t	99.61
PRK10191	146	putative acyl transferase; Provisional	99.6
COG1045	194	CysE Serine acetyltransferase [Amino acid transpor	99.6
TIGR02353	695	NRPS_term_dom non-ribosomal peptide synthetase ter	99.59
cd03349	145	LbH_XAT Xenobiotic acyltransferase (XAT): The XAT	99.59
cd04649	147	LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah	99.56
PLN02357	360	serine acetyltransferase	99.55
TIGR03308	204	phn_thr-fam phosphonate metabolim protein, transfe	99.54
cd03354	101	LbH_SAT Serine acetyltransferase (SAT): SAT cataly	99.52
cd04647	109	LbH_MAT_like Maltose O-acyltransferase (MAT)-like:	99.5
cd03360	197	LbH_AT_putative Putative Acyltransferase (AT), Lef	99.45
PLN02296	269	carbonate dehydratase	99.45
KOG1461	673	consensus Translation initiation factor 2B, epsilo	99.45
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	99.44
COG2171	271	DapD Tetrahydrodipicolinate N-succinyltransferase	99.43
PRK05293	380	glgC glucose-1-phosphate adenylyltransferase; Prov	99.43
COG1208	358	GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas	99.42
cd03358	119	LbH_WxcM_N_like WcxM-like, Left-handed parallel be	99.42
cd04649	147	LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah	99.41
TIGR03536	341	DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl	99.4
TIGR03536	341	DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl	99.39
PLN02241	436	glucose-1-phosphate adenylyltransferase	99.39
KOG1461	673	consensus Translation initiation factor 2B, epsilo	99.37
TIGR03535	319	DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo	99.34
PRK09677	192	putative lipopolysaccharide biosynthesis O-acetyl	99.33
cd05635	101	LbH_unknown Uncharacterized proteins, Left-handed	99.31
PRK10092	183	maltose O-acetyltransferase; Provisional	99.29
cd04652	81	LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal	99.28
PRK09527	203	lacA galactoside O-acetyltransferase; Reviewed	99.28
cd03357	169	LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and	99.27
PRK10502	182	putative acyl transferase; Provisional	99.26
TIGR03535	319	DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo	99.25
TIGR01208	353	rmlA_long glucose-1-phosphate thymidylylransferase	99.25
cd05824	80	LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr	99.24
cd05824	80	LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr	99.24
KOG3121	184	consensus Dynactin, subunit p25 [Cytoskeleton]	99.23
cd03356	79	LbH_G1P_AT_C_like Left-handed parallel beta-Helix	99.23
cd05787	79	LbH_eIF2B_epsilon eIF-2B epsilon subunit, central	99.23
cd03356	79	LbH_G1P_AT_C_like Left-handed parallel beta-Helix	99.21
cd04652	81	LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal	99.2
cd05787	79	LbH_eIF2B_epsilon eIF-2B epsilon subunit, central	99.2
COG0448	393	GlgC ADP-glucose pyrophosphorylase [Carbohydrate t	99.16
cd04651	104	LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera	99.12
cd00208	78	LbetaH Left-handed parallel beta-Helix (LbetaH or	99.11
cd05825	107	LbH_wcaF_like wcaF-like: This group is composed of	99.11
KOG1322	371	consensus GDP-mannose pyrophosphorylase/mannose-1-	99.1
PRK02862	429	glgC glucose-1-phosphate adenylyltransferase; Prov	99.09
PRK10191	146	putative acyl transferase; Provisional	99.09
KOG4042	190	consensus Dynactin subunit p27/WS-3, involved in t	99.08
PRK00844	407	glgC glucose-1-phosphate adenylyltransferase; Prov	99.07
cd03354	101	LbH_SAT Serine acetyltransferase (SAT): SAT cataly	99.07
TIGR01172	162	cysE serine O-acetyltransferase. Cysteine biosynth	99.05
TIGR02092	369	glgD glucose-1-phosphate adenylyltransferase, GlgD	99.05
cd00208	78	LbetaH Left-handed parallel beta-Helix (LbetaH or	99.04
cd04651	104	LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera	99.02
cd05635	101	LbH_unknown Uncharacterized proteins, Left-handed	99.02
PLN02739	355	serine acetyltransferase	99.02
PRK11132	273	cysE serine acetyltransferase; Provisional	99.01
PLN02694	294	serine O-acetyltransferase	98.99
cd04647	109	LbH_MAT_like Maltose O-acyltransferase (MAT)-like:	98.98
TIGR02091	361	glgC glucose-1-phosphate adenylyltransferase. This	98.98
PLN02241	436	glucose-1-phosphate adenylyltransferase	98.96
COG2171	271	DapD Tetrahydrodipicolinate N-succinyltransferase	98.96
PRK00725	425	glgC glucose-1-phosphate adenylyltransferase; Prov	98.95
TIGR01208	353	rmlA_long glucose-1-phosphate thymidylylransferase	98.95
KOG1460	407	consensus GDP-mannose pyrophosphorylase [Carbohydr	98.93
PRK05293	380	glgC glucose-1-phosphate adenylyltransferase; Prov	98.93
KOG4042	190	consensus Dynactin subunit p27/WS-3, involved in t	98.9
cd03349	145	LbH_XAT Xenobiotic acyltransferase (XAT): The XAT	98.89
PLN02357	360	serine acetyltransferase	98.87
COG1208	358	GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas	98.86
KOG1462	433	consensus Translation initiation factor 2B, gamma	98.83
PRK02862	429	glgC glucose-1-phosphate adenylyltransferase; Prov	98.81
COG4801	277	Predicted acyltransferase [General function predic	98.8
COG1045	194	CysE Serine acetyltransferase [Amino acid transpor	98.77
KOG3121	184	consensus Dynactin, subunit p25 [Cytoskeleton]	98.76
KOG1462	433	consensus Translation initiation factor 2B, gamma	98.7
PRK00844	407	glgC glucose-1-phosphate adenylyltransferase; Prov	98.69
KOG1460	407	consensus GDP-mannose pyrophosphorylase [Carbohydr	98.67
COG0110	190	WbbJ Acetyltransferase (isoleucine patch superfami	98.64
PRK00725	425	glgC glucose-1-phosphate adenylyltransferase; Prov	98.55
KOG1322	371	consensus GDP-mannose pyrophosphorylase/mannose-1-	98.49
TIGR02092	369	glgD glucose-1-phosphate adenylyltransferase, GlgD	98.47
TIGR02091	361	glgC glucose-1-phosphate adenylyltransferase. This	98.46
PF14602	34	Hexapep_2: Hexapeptide repeat of succinyl-transfer	98.4
KOG4750	269	consensus Serine O-acetyltransferase [Amino acid t	98.37
COG4801	277	Predicted acyltransferase [General function predic	98.23
COG0448	393	GlgC ADP-glucose pyrophosphorylase [Carbohydrate t	98.22
PF00132	36	Hexapep: Bacterial transferase hexapeptide (six re	98.1
PF00132	36	Hexapep: Bacterial transferase hexapeptide (six re	97.86
PF14602	34	Hexapep_2: Hexapeptide repeat of succinyl-transfer	97.66
PF07959	414	Fucokinase: L-fucokinase; InterPro: IPR012887 In t	89.88
PF07959	414	Fucokinase: L-fucokinase; InterPro: IPR012887 In t	86.32

>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

Probab=100.00  E-value=2.5e-37  Score=262.32  Aligned_cols=221  Identities=44%  Similarity=0.732  Sum_probs=191.7

Q ss_pred             ceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEE-eccEECCCcEECCCeEECCCCc
Q 025890           22 GIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGF  100 (246)
Q Consensus        22 ~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~~~  100 (246)
                      +.+++++.|++++.|++++.|++++.|+++++|+++|+|++++.||++|.|++++.| .++.||++|.|+++++|+.++|
T Consensus        98 a~i~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~gf  177 (324)
T TIGR01853        98 AVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVIGSDGF  177 (324)
T ss_pred             CEeCCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeCCCceECCCcEECCCCEECCCCEECCCcEECCCCc
Confidence            344555555555555555555555666666666666666667777777777777777 4899999999999999999999


Q ss_pred             eeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEEC
Q 025890          101 GFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIG  180 (246)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig  180 (246)
                      ++.....+.+...++.+.+.||+++.|+++++|.++.+.++.||+++.++..+.+++++.||+++.+..++.+.++++||
T Consensus       178 g~~~~~~~~~~~i~~~G~vvIgd~v~IGa~~~I~r~~~~~t~Ig~~~~I~n~v~I~~~v~IG~~~~I~~~~~iag~~~IG  257 (324)
T TIGR01853       178 GYAHTANGGHVKIPQIGRVIIEDDVEIGANTTIDRGAFDDTIIGEGTKIDNLVQIAHNCRIGENCIIVAQVGIAGSTKIG  257 (324)
T ss_pred             cceeccCCcceecCccceEEECCCcEECCCCEEecCCcCcceecCCcEEccCcEECCCCEECCCcEECCcceEcCccEEC
Confidence            88776666777778888999999999999999999888999999999999999999999999999999999999999999


Q ss_pred             CCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhhHHHHHHhhhhhhccc
Q 025890          181 DYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRSSK  242 (246)
Q Consensus       181 ~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~  242 (246)
                      ++|++|+++.|.+++.||++++|+++|.|++|+|++.++.|+||+.++.|.+.+..++||.+
T Consensus       258 ~~~~ig~~~~I~~~v~Ig~~~~ig~~s~V~~~v~~~~~~~G~pa~~~~~~~~~~~~~~~l~~  319 (324)
T TIGR01853       258 RNVIIGGQVGVAGHLEIGDNVTIGAKSGVTKSIPPPGVYGGIPARPNKEWLRIAAKVKRLPE  319 (324)
T ss_pred             CCeEEccccccccCCEECCCCEEccCCEeCCcCCCCcEEEccCccHHHHHHHHHHHHhccHh
Confidence            99999999999999999999999999999999999999999999999999999988888874

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).

>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]

Probab=100.00  E-value=3.5e-37  Score=254.08  Aligned_cols=222  Identities=47%  Similarity=0.782  Sum_probs=202.9

Q ss_pred             CCceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEE-eccEECCCcEECCCeEECCC
Q 025890           20 GGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQD   98 (246)
Q Consensus        20 ~~~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~   98 (246)
                      ..+.+++++.+.+++.|+++++|++++.||+++.|+++|+|++++.||++++|.+++.| .++.||++|.|+++++|+.+
T Consensus       104 ~~A~i~~~A~i~~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~d  183 (338)
T COG1044         104 PTAVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGAD  183 (338)
T ss_pred             ccccccCcCccCCCCccCCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEccC
Confidence            44456666777777777888888888888888888888888888888888888888888 56999999999999999999


Q ss_pred             CceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceE
Q 025890           99 GFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSAT  178 (246)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~  178 (246)
                      .|++..-..+ |.+-++.+..+||+++.||.+++|.++.+.++.|++++.++..+.|+++|+||.+|.|..++.+.+.++
T Consensus       184 gFg~a~~~~g-~~Ki~q~g~V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN~vqIaHnv~IG~~~~I~~~vgIaGs~~  262 (338)
T COG1044         184 GFGYAGTAIG-WVKIPQIGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVK  262 (338)
T ss_pred             ccccccccCC-ceEcceeceEEECCceEEcccceeccccccCceecCCcEEcceeEEccccEECCCcEEeccceeeccce
Confidence            9999877777 889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhhHHHHHHhhhhhhccc
Q 025890          179 IGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRSSK  242 (246)
Q Consensus       179 Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~  242 (246)
                      ||++|.||+.+-+..+..|+|++.|++.+.+.+++|++..+.|.|+.+.++|.|....+.++.+
T Consensus       263 IG~~v~igg~vgI~gh~~IgD~~~I~~~~~v~~~i~~~~~~gg~P~~p~k~w~k~~a~~~~l~~  326 (338)
T COG1044         263 IGKYVIIGGQVGIAGHLEIGDGVTIGARSGVMASITEPGYSGGIPAQPIKEWLKTAALIRRLPE  326 (338)
T ss_pred             ECCeEEECcceeecCceEEcCCCEEecccccccccCCCceeccCCCchHHHHHHHHHHHhhCHH
Confidence            9999999999999999999999999999999999999998888999999999887777766654

>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

Probab=100.00  E-value=1.6e-35  Score=254.47  Aligned_cols=218  Identities=45%  Similarity=0.708  Sum_probs=184.1

Q ss_pred             eeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEE-eccEECCCcEECCCeEECCCCce
Q 025890           23 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFG  101 (246)
Q Consensus        23 ~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~  101 (246)
                      .+++++++++++.|++++.|++++.|++++.|+++|+|++++.||++|.|++++.| ..+.|+++|.|++++.|+.++|+
T Consensus       108 ~v~~~~~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~  187 (343)
T PRK00892        108 VIDPSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIGSDGFG  187 (343)
T ss_pred             EECCCCEECCCCEECCCeEEeccceeCCCcEECCCCEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEEeccCcC
Confidence            34444444455555555555555555556666666666666666666777777777 45779999999999999999998


Q ss_pred             eEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECC
Q 025890          102 FFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGD  181 (246)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~  181 (246)
                      +. ...+.+..-++.+.+.||+++.|+++++|.++.+.++.||+++.++.++.|+++++||+++.+++++.+.++++||+
T Consensus       188 ~~-~~~~~~~~~~~~g~v~Ig~~v~IGa~~~I~~~~~~~t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~~~iG~  266 (343)
T PRK00892        188 FA-NDRGGWVKIPQLGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGSTKIGR  266 (343)
T ss_pred             cc-cCCCceeeccccccEEECCCcEECCCcEEecCccccceeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCCCEECC
Confidence            87 55666777788889999999999999999988888999999999999999999999999999999999999999999


Q ss_pred             CeEECcCcEECCCcEECCCCEEccCcEEeccCCC-CCeEEccCchhhHHHHHHhhhhhhcc
Q 025890          182 YVTLGGRVAVRDHVSIASKVRLAANSCVFKDITE-PGDYGGFPAVPIHEWRRQVANQIRSS  241 (246)
Q Consensus       182 ~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~-~~~~~g~p~~~~~~~~~~~~~~~~~~  241 (246)
                      +|+|+.++.|.++++||++++|+++|.+++|+|+ +.++.|+||+.+++|.+.+..+++|.
T Consensus       267 ~~~ig~~~~i~~~~~ig~~~~i~~~s~v~~~i~~~~~~~~G~pa~~~~~~~~~~~~~~~l~  327 (343)
T PRK00892        267 YCMIGGQVGIAGHLEIGDGVTITAMSGVTKSIPEPGEYSSGIPAQPNKEWLRTAARLRRLD  327 (343)
T ss_pred             ceEECCCCEEcCCCEECCCCEEecCCeeCCccCCCCeEEEeecCchHHHHHHHHHHHhhhH
Confidence            9999999999999999999999999999999999 67889999999999998888777775

>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=100.00  E-value=2.1e-32  Score=224.72  Aligned_cols=182  Identities=27%  Similarity=0.396  Sum_probs=146.8

Q ss_pred             cCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEE-eccEECCCcEECCCeEECCCCceeEEcCCCceeecCc
Q 025890           37 EVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQ  115 (246)
Q Consensus        37 ~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~  115 (246)
                      .+.|.|++++.|++++.|+++|+|++++.||+++.|++++.| .++.||++|.|++++.|+..+......        ..
T Consensus         3 hp~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~--------g~   74 (255)
T PRK12461          3 HPTAVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYK--------GE   74 (255)
T ss_pred             CCCCEECCCCEECCCCEECCCCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCcccccc--------Cc
Confidence            344444444455555555555555555556666666666666 467778888899999998755432211        12


Q ss_pred             ccceEECCCcEECcccEEcCCCc--cCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECC
Q 025890          116 LLNARIGNHVEIGANSCIDRGSW--RDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRD  193 (246)
Q Consensus       116 ~~~~~Ig~~~~ig~~~~i~~~~~--~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~  193 (246)
                      ...+.||+++.|+++++|..+..  ..+.||+++.+..+++++++|+||++++++.++.+.++++|||+++|++++.|.+
T Consensus        75 ~~~v~IG~~~~I~e~vtI~~gt~~g~~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~  154 (255)
T PRK12461         75 ESRLEIGDRNVIREGVTIHRGTKGGGVTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQ  154 (255)
T ss_pred             cceeEECCceEECCccEEecCcccCCcEEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEECC
Confidence            23689999999999999987654  4689999999999999999999999999999999999999999999999999999


Q ss_pred             CcEECCCCEEccCcEEeccCCCCCeEEccCchh
Q 025890          194 HVSIASKVRLAANSCVFKDITEPGDYGGFPAVP  226 (246)
Q Consensus       194 ~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~  226 (246)
                      +++||++++|+++|+|++|+||++++.|+||+.
T Consensus       155 ~~~IG~~a~Vg~gs~V~~dVpp~~i~~G~pa~~  187 (255)
T PRK12461        155 FCRIGALAMMAGGSRISKDVPPYCMMAGHPTNV  187 (255)
T ss_pred             CCEECCCcEECCCceEeccCCCCeEEecCcceE
Confidence            999999999999999999999999999999984

>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

Probab=100.00  E-value=3.2e-31  Score=212.58  Aligned_cols=202  Identities=50%  Similarity=0.785  Sum_probs=171.1

Q ss_pred             cEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEE-eccEECCCcEECCCeEECCCCceeEEcC
Q 025890           28 ACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDE  106 (246)
Q Consensus        28 ~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~  106 (246)
                      +.+++++.|.+.+.|++++.|++++.|+++|+|.+++.|++++.|++++.| .++.|+++|.|++++.|+.++|.+....
T Consensus         2 ~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~   81 (205)
T cd03352           2 AKIGENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDG   81 (205)
T ss_pred             cEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEcCCCceeEecC
Confidence            345566666666666666667777777777777777777777777777777 4488999999999999988777654433


Q ss_pred             CCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEEC
Q 025890          107 HGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLG  186 (246)
Q Consensus       107 ~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig  186 (246)
                       +.+...+....+.|++++.+++++.+.......+.|++++.++.++.+++++.+++++.++.++.+.++++|+++|+|+
T Consensus        82 -~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~ig  160 (205)
T cd03352          82 -GGWVKIPQLGGVIIGDDVEIGANTTIDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVIIG  160 (205)
T ss_pred             -CcEEEcCCcceEEECCCEEECCCCEEeccccCCeEECCCCEECCceEEeCCCEECCCCEECCCCEEccccEECCCeEEc
Confidence             4444555566899999999999999987666789999999999999999999999999999999999999999999999


Q ss_pred             cCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhhHHH
Q 025890          187 GRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEW  230 (246)
Q Consensus       187 ~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~~  230 (246)
                      +++++.++++|+++++|+++|.|++++|++.++.|+||+.++.+
T Consensus       161 ~~~~v~~~~~ig~~~~i~~~s~v~~~~~~~~~~~G~pa~~~~~~  204 (205)
T cd03352         161 GQVGIAGHLTIGDGVVIGAGSGVTSIVPPGEYVSGTPAQPHREW  204 (205)
T ss_pred             CCCEEeCCcEECCCCEEcCCCEEeeECCCCCEEEeecCchhhhc
Confidence            99999999999999999999999999999999999999988765

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>COG1043 LpxA Acyl-[acyl carrier protein]

Probab=100.00  E-value=1.2e-32  Score=215.51  Aligned_cols=185  Identities=29%  Similarity=0.405  Sum_probs=160.7

Q ss_pred             cEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEE-eccEECCCcEECCCeEECCCCceeEEcCCCceee
Q 025890           34 VLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLK  112 (246)
Q Consensus        34 ~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~  112 (246)
                      +.|.+.|.|.+.+.|+++++||+.|+|++++.|++++.|+.+++| ..+.||+++.|.+++.|+.+|.+..+        
T Consensus         4 ~~IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKy--------   75 (260)
T COG1043           4 AKIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKY--------   75 (260)
T ss_pred             cccCcceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCccccc--------
Confidence            345566666666677777777788888888888888888888888 67899999999999999987654332        


Q ss_pred             cCcccceEECCCcEECcccEEcCCCc---cCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCc
Q 025890          113 KPQLLNARIGNHVEIGANSCIDRGSW---RDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRV  189 (246)
Q Consensus       113 ~~~~~~~~Ig~~~~ig~~~~i~~~~~---~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~  189 (246)
                      ..+....+||+++.|.++++|..+..   .-+.||+++.+..++++.++|.||++|++..++++.+++.|||++.||+.+
T Consensus        76 kge~T~l~IG~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~s  155 (260)
T COG1043          76 KGEPTRLIIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLS  155 (260)
T ss_pred             CCCceEEEECCCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEcCcc
Confidence            23334789999999999999999876   458999999999999999999999999999999999999999999999999


Q ss_pred             EECCCcEECCCCEEccCcEEeccCCCCCeEEccCchh
Q 025890          190 AVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVP  226 (246)
Q Consensus       190 ~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~  226 (246)
                      -|.+.++||++++|+..|.+.+|+||+.+..|||++.
T Consensus       156 aVHQFvrIG~~amiGg~S~v~~DVpPy~~~~Gn~a~l  192 (260)
T COG1043         156 AVHQFVRIGAHAMIGGLSAVSQDVPPYVIASGNHARL  192 (260)
T ss_pred             eEEEEEEEcchheeccccccccCCCCeEEecCCcccc
Confidence            9999999999999999999999999999888888754

>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=100.00  E-value=2.1e-31  Score=220.48  Aligned_cols=184  Identities=31%  Similarity=0.419  Sum_probs=147.7

Q ss_pred             EcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEE-eccEECCCcEECCCeEECCCCceeEEcCCCceeecC
Q 025890           36 IEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKP  114 (246)
Q Consensus        36 I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~  114 (246)
                      |.+.|.|++.+.|++++.|+++|+|++++.||++|.|++++.| .++.||++|.|++++.|+.++.+....        .
T Consensus         5 I~p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~--------g   76 (262)
T PRK05289          5 IHPTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYK--------G   76 (262)
T ss_pred             cCCCCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeeccc--------C
Confidence            4444444445555555555555555555666666666666666 457788889999999998755432211        1


Q ss_pred             cccceEECCCcEECcccEEcCCCc---cCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEE
Q 025890          115 QLLNARIGNHVEIGANSCIDRGSW---RDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAV  191 (246)
Q Consensus       115 ~~~~~~Ig~~~~ig~~~~i~~~~~---~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v  191 (246)
                      ....+.||+++.|+++++|.....   ..+.||+++.++.++.++++|.||+++.++.++.+.++++|||+|+||+++.|
T Consensus        77 ~~~~v~IG~~~~I~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i  156 (262)
T PRK05289         77 EPTRLVIGDNNTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAV  156 (262)
T ss_pred             CCCeEEECCCCEECCCeEEecccccCCCeeEECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeeccee
Confidence            123789999999999999987642   35899999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEECCCCEEccCcEEeccCCCCCeEEccCchhh
Q 025890          192 RDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI  227 (246)
Q Consensus       192 ~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~  227 (246)
                      .++++||++++|+++|+|++|+||+.++.|+|++..
T Consensus       157 ~~~v~Ig~~~~Ig~gs~V~~di~~~~~~~G~pa~~~  192 (262)
T PRK05289        157 HQFVRIGAHAMVGGMSGVSQDVPPYVLAEGNPARLR  192 (262)
T ss_pred             cCCCEECCCCEEeeecceeccCCCCeEEecccCeEe
Confidence            999999999999999999999999999999999863

>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

Probab=99.97  E-value=5.3e-29  Score=205.74  Aligned_cols=180  Identities=31%  Similarity=0.406  Sum_probs=137.0

Q ss_pred             CcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEE-eccEECCCcEECCCeEECCCCceeEEcCCCceeecCccc
Q 025890           39 GAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLL  117 (246)
Q Consensus        39 ~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~  117 (246)
                      .+.|++.+.|+++++|+++++|++++.|++++.|++++.| .++.||++|.|++++.|++.++....        .....
T Consensus         5 ~a~I~~~a~ig~~~~I~p~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~--------~g~~~   76 (254)
T cd03351           5 TAIVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKY--------KGEPT   76 (254)
T ss_pred             CCEECCCCEECCCCEECCCcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceee--------cCCCc
Confidence            3334444444444444444444444555555555555555 34667777788888888754322111        11112


Q ss_pred             ceEECCCcEECcccEEcCCCc---cCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCC
Q 025890          118 NARIGNHVEIGANSCIDRGSW---RDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDH  194 (246)
Q Consensus       118 ~~~Ig~~~~ig~~~~i~~~~~---~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~  194 (246)
                      .+.||+++.|+++++|..+..   ..+.||+++.++.++.+.+++.||+++.++.++.+..+++||++|+|+.++.+.++
T Consensus        77 ~v~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~  156 (254)
T cd03351          77 RLEIGDNNTIREFVTIHRGTAQGGGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQF  156 (254)
T ss_pred             eEEECCCCEECCccEEeccccCCCCceEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCC
Confidence            788999999999999987543   25899999999999999999999999999999999999999999999999999999


Q ss_pred             cEECCCCEEccCcEEeccCCCCCeEEccCchh
Q 025890          195 VSIASKVRLAANSCVFKDITEPGDYGGFPAVP  226 (246)
Q Consensus       195 ~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~  226 (246)
                      ++|+++++|+++|+|++++|+++++.|+|++.
T Consensus       157 v~Ig~~~~Ig~~s~V~~~i~~~~~~~G~~~~~  188 (254)
T cd03351         157 CRIGRHAMVGGGSGVVQDVPPYVIAAGNRARL  188 (254)
T ss_pred             cEECCCCEECcCCEEeeecCCCeEEEccCCeE
Confidence            99999999999999999999999999998863

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.

>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

Probab=99.97  E-value=9.3e-29  Score=204.29  Aligned_cols=177  Identities=29%  Similarity=0.422  Sum_probs=136.7

Q ss_pred             ECcCcEECCCcEECCCCEECCCcEECCCCEECCceEE-eccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceE
Q 025890           42 VHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNAR  120 (246)
Q Consensus        42 I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  120 (246)
                      |++.++|++++.|+++++|++++.|++++.|+++|.| .++.||++|.|++++.|+..++....        ......+.
T Consensus         7 I~~~a~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~--------~g~~~~v~   78 (254)
T TIGR01852         7 IEPGAEIGENVEIGPFCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKY--------KGERTELI   78 (254)
T ss_pred             eCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceee--------cCccceEE
Confidence            3333333344444444444444444455555555544 34667777888888888654322111        01113789


Q ss_pred             ECCCcEECcccEEcCCCc---cCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEE
Q 025890          121 IGNHVEIGANSCIDRGSW---RDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI  197 (246)
Q Consensus       121 Ig~~~~ig~~~~i~~~~~---~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~i  197 (246)
                      ||+++.|+++++|..+..   .++.||+++.++.++.+.+++.||++++++.++.+..+++|||+|+|+.++.+.++++|
T Consensus        79 IG~~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~I  158 (254)
T TIGR01852        79 IGDNNTIREFVTINRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRI  158 (254)
T ss_pred             ECCCCEECCCCEECCcccCCCCcEEECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCCcEE
Confidence            999999999999987643   36899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEccCcEEeccCCCCCeEEccCchh
Q 025890          198 ASKVRLAANSCVFKDITEPGDYGGFPAVP  226 (246)
Q Consensus       198 g~~~~v~~~s~v~~~~~~~~~~~g~p~~~  226 (246)
                      +++++|+++|+|++++|+++++.|+|++.
T Consensus       159 g~~~~Ig~~s~V~~~i~~~~~~~G~pa~~  187 (254)
T TIGR01852       159 GRYAMIGGLSAVSKDVPPYGLVEGNRARL  187 (254)
T ss_pred             CCCCEEeeeeeEeeecCCCcEEecCcCee
Confidence            99999999999999999999999999987

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).

>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

Probab=99.96  E-value=8.8e-27  Score=185.14  Aligned_cols=175  Identities=23%  Similarity=0.341  Sum_probs=147.4

Q ss_pred             eeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCcee
Q 025890           23 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGF  102 (246)
Q Consensus        23 ~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~  102 (246)
                      .+.+.+++++++.|++++.|++++.|++++.|+++|.|.+. .|++++.|++++.|.++.|++++.|++++.|..     
T Consensus        11 ~~~~~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~-~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~-----   84 (193)
T cd03353          11 YIDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDS-TIGDGVVIKASSVIEGAVIGNGATVGPFAHLRP-----   84 (193)
T ss_pred             EEcCCeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCC-EECCCCEEcCCeEEEeeEECCCCEECCccEEcC-----
Confidence            44556666777777777777777777777777777777643 888889999999899999999999999999975     


Q ss_pred             EEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEec-------
Q 025890          103 FVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAG-------  175 (246)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~-------  175 (246)
                                     ++.|++++.+++++.+.     ++.+++++.++..+.+ .++.||+++.++.++.+..       
T Consensus        85 ---------------~~~Ig~~~~Ig~~~~i~-----~s~ig~~~~i~~~~~i-~~~~Ig~~~~ig~~~~~~~~~~~~~~  143 (193)
T cd03353          85 ---------------GTVLGEGVHIGNFVEIK-----KSTIGEGSKANHLSYL-GDAEIGEGVNIGAGTITCNYDGVNKH  143 (193)
T ss_pred             ---------------ccEECCCCEECCcEEEe-----cceEcCCCEeccccee-cccEECCCCEEcCceEEeccCCcccc
Confidence                           78899999999988885     4788888888887777 5788888888888876643       


Q ss_pred             ceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCc
Q 025890          176 SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPA  224 (246)
Q Consensus       176 ~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~  224 (246)
                      +++|||+++++.++++.++++|+++++|+++|+|++|+|+++++.|.|.
T Consensus       144 ~~vigd~~~ig~~~~i~~~~~Ig~~~~i~~gs~V~~~v~~~~~v~~~~~  192 (193)
T cd03353         144 RTVIGDNVFIGSNSQLVAPVTIGDGATIAAGSTITKDVPPGALAIARAR  192 (193)
T ss_pred             CCEECCCeEEccCCEEeCCcEECCCcEECCCCEEccccCCCCEEEeccC
Confidence            6899999999999999999999999999999999999999999999875

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.

>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

Probab=99.95  E-value=7.7e-27  Score=208.13  Aligned_cols=184  Identities=24%  Similarity=0.317  Sum_probs=151.8

Q ss_pred             eccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeE
Q 025890           24 FHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFF  103 (246)
Q Consensus        24 i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~  103 (246)
                      +++++.|++++.|++++.|++++.||+++.|+++|.|. ++.|+++|.|++++.|.++.|+++|.|++++.|..      
T Consensus       258 i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~------  330 (451)
T TIGR01173       258 IRGTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIK-NSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRP------  330 (451)
T ss_pred             ECCccEECCCCEEcCCeEEeCceEECCCCEECCCcEEe-eeEecCCCEEeeecEEecccccCCcEECCeeEECC------
Confidence            44555666666666667776677777777777777775 67888899999999998999999999999999974      


Q ss_pred             EcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEec-------c
Q 025890          104 VDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAG-------S  176 (246)
Q Consensus       104 ~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~-------~  176 (246)
                                    .+.|++++.|++++.+.     ++.|++++.++..+.+ .++.||+++.++.++.+.+       +
T Consensus       331 --------------~~~i~~~~~Ig~~~~i~-----~~~ig~~~~i~~~~~i-~~~~Ig~~~~ig~~~~~~~~~~~~~~~  390 (451)
T TIGR01173       331 --------------GSVLGAGVHIGNFVETK-----NARIGKGSKAGHLSYL-GDAEIGSNVNIGAGTITCNYDGANKHK  390 (451)
T ss_pred             --------------CCEECCCcEEccceeec-----CcEECCCcEecceeeE-eeeEEcCCcEECCCeEEeCcccccCCC
Confidence                          68999999999998885     4788888888888777 5688888888888777654       5


Q ss_pred             eEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCc-hhhHHHHHHh
Q 025890          177 ATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPA-VPIHEWRRQV  234 (246)
Q Consensus       177 ~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~-~~~~~~~~~~  234 (246)
                      ++|||+|+||.++.+.++++||++++|+++|+|++|+|+++++.|.|+ +.++.|.++.
T Consensus       391 ~~Igd~~~ig~~~~i~~~~~ig~~~~i~~g~~v~~~v~~~~~~~~~~~~~~~~~~~~~~  449 (451)
T TIGR01173       391 TIIGDGVFIGSNTQLVAPVKVGDGATIAAGSTVTKDVPEGALAISRARQRNIEGWVRPK  449 (451)
T ss_pred             CEECCCcEECCCCEEECCcEECCCCEEccCCEECccCCCCcEEEccCceeecccccccc
Confidence            999999999999999999999999999999999999999999988655 5566665543

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.

>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

Probab=99.95  E-value=4.6e-26  Score=188.22  Aligned_cols=197  Identities=24%  Similarity=0.280  Sum_probs=164.1

Q ss_pred             CCceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEe-------------ccEECCC
Q 025890           20 GGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-------------NCIIGDS   86 (246)
Q Consensus        20 ~~~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~-------------~~~Ig~~   86 (246)
                      ....+++++.+++++.|++++.|+++++|+++++|+++|.|.+++.||+++.|++++.|.             .+.||++
T Consensus         4 ~~a~I~~~a~ig~~~~I~p~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~   83 (254)
T cd03351           4 PTAIVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDN   83 (254)
T ss_pred             CCCEECCCCEECCCCEECCCcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCC
Confidence            345677888888888888888888888888888888888888888999999999999884             5889999


Q ss_pred             cEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcE
Q 025890           87 CIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCM  166 (246)
Q Consensus        87 ~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~  166 (246)
                      |.|++++.|......    +         ...+.||+++.|+++++|.    +++.||+++.++.++.+.+++.||++++
T Consensus        84 ~~Ig~~~~I~~~~~~----~---------~~~~~IG~~~~I~~~~~I~----~~~~IG~~~~i~~~~~i~~~v~Igd~~~  146 (254)
T cd03351          84 NTIREFVTIHRGTAQ----G---------GGVTRIGNNNLLMAYVHVA----HDCVIGNNVILANNATLAGHVEIGDYAI  146 (254)
T ss_pred             CEECCccEEeccccC----C---------CCceEECCCCEECCCCEEC----CCCEECCCcEECCCccccCCcEeCCCcE
Confidence            999999999753210    0         0268999999999999997    4699999999999999999999999999


Q ss_pred             EccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCe-EEccCchhhHHHHHHhh
Q 025890          167 LCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGD-YGGFPAVPIHEWRRQVA  235 (246)
Q Consensus       167 i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~-~~g~p~~~~~~~~~~~~  235 (246)
                      ++.++.+.++++||+++.|++++.|.++  |++++++.+.+....+++...+ ..|.|.....++.+.++
T Consensus       147 Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~~--i~~~~~~~G~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~  214 (254)
T cd03351         147 IGGLSAVHQFCRIGRHAMVGGGSGVVQD--VPPYVIAAGNRARLRGLNLVGLKRRGFSREEIRALKRAYR  214 (254)
T ss_pred             ECCcceECCCcEECCCCEECcCCEEeee--cCCCeEEEccCCeEeccceeceeecCCCHHHHHHHHHHHH
Confidence            9999999999999999999999999998  5789998877666555655554 45888877777766664

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.

>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.95  E-value=2.6e-26  Score=204.98  Aligned_cols=203  Identities=20%  Similarity=0.316  Sum_probs=164.7

Q ss_pred             Eeechhhhhhhccc------CCCce--------eccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCC
Q 025890            5 VSDIESRQQFQKWH------NGGGI--------FHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQST   70 (246)
Q Consensus         5 ~~~~~~~~~~~~~~------~~~~~--------i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~   70 (246)
                      |.++.+.+.|++..      ..+..        +.....+++++.|+++|.|.+++.|++++.|+++|.|. +++|+++|
T Consensus       229 ~~di~~~~~y~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~-~~~ig~~~  307 (456)
T PRK09451        229 RLQLARLERVYQAEQAEKLLLAGVMLRDPARFDLRGTLTHGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLK-NCVIGDDC  307 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCEEeCCCEEEECCcEEECCCCEEcCCeEEecCcEECCCCEECCCceEe-cCEEcCCC
Confidence            55677777766532      21211        22344567788888888888888888888888888885 78999999


Q ss_pred             EECCceEEeccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEEC
Q 025890           71 NIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKID  150 (246)
Q Consensus        71 ~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~  150 (246)
                      .|++++.|.++.|++++.|++++.|..                    .+.+++++.|++++.+.     ++.+++++.++
T Consensus       308 ~I~~~~~i~~~~ig~~~~Ig~~~~i~~--------------------~~~i~~~~~ig~~~~i~-----~~~i~~~~~~~  362 (456)
T PRK09451        308 EISPYSVVEDANLGAACTIGPFARLRP--------------------GAELAEGAHVGNFVEMK-----KARLGKGSKAG  362 (456)
T ss_pred             EEcCCEEEeCCccCCCcEecCceEEeC--------------------CCEECCCceeccceeee-----ceeeCCCCccC
Confidence            999999999999999999999999975                    78899999999998885     46788888887


Q ss_pred             CCCEEccCcEECCCcEEccceeEec-------ceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeE-Ecc
Q 025890          151 NLVQIGHNVAIGKSCMLCGQVGIAG-------SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDY-GGF  222 (246)
Q Consensus       151 ~~~~i~~~~~Ig~~~~i~~~~~~~~-------~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~-~g~  222 (246)
                      ..+.+ .++.||++|.|+.++.+..       .++|||+|+||.++++.++++|+++++|+++|++++|+|+++.+ .|.
T Consensus       363 ~~~~~-g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~gs~v~~~v~~~~~~~~~~  441 (456)
T PRK09451        363 HLTYL-GDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIGAGTTVTRDVAENELVISRV  441 (456)
T ss_pred             ccccc-cccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEEeCCcEECCCCEECCCCEEccccCCCCEEEecc
Confidence            77666 4677777777777765542       48999999999999999999999999999999999999999976 569


Q ss_pred             CchhhHHHHHHh
Q 025890          223 PAVPIHEWRRQV  234 (246)
Q Consensus       223 p~~~~~~~~~~~  234 (246)
                      |++.+.+|.|..
T Consensus       442 ~~~~~~~~~~~~  453 (456)
T PRK09451        442 PQRHIQGWQRPV  453 (456)
T ss_pred             Cceecccccccc
Confidence            999998886654

>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

Probab=99.94  E-value=4.6e-26  Score=192.41  Aligned_cols=198  Identities=22%  Similarity=0.320  Sum_probs=165.2

Q ss_pred             hhhhhhcccCCCceecc--CcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCC-----cEECCCCEECCceEEeccE
Q 025890           10 SRQQFQKWHNGGGIFHQ--SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPA-----VTIGQSTNIGFNVALSNCI   82 (246)
Q Consensus        10 ~~~~~~~~~~~~~~i~~--~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~-----~~ig~~~~I~~~~~I~~~~   82 (246)
                      .++...+||..++.+..  ..+|+..+.|+.++.|.+++.|.++++||++|+|+++     +.|++++.|...++|+++.
T Consensus       243 q~r~~~~~m~~GVtl~dP~t~~i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~  322 (460)
T COG1207         243 QRRIAEKLMLAGVTLIDPATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGST  322 (460)
T ss_pred             HHHHHHHHHHcCcEEeCCCeEEEcCcEEECCceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccE
Confidence            44556778888886633  4678888888888888888888777777777777777     5667777777777778899


Q ss_pred             ECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEEC
Q 025890           83 IGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIG  162 (246)
Q Consensus        83 Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig  162 (246)
                      ++++|.||+++.|.+                    .+.|++++.||.++.+.     ++.||+++..+.-+++ .++.||
T Consensus       323 vg~~~~VGPfA~LRP--------------------g~~L~~~~hIGNFVEvK-----~a~ig~gsKa~HLtYl-GDA~iG  376 (460)
T COG1207         323 VGEGATVGPFARLRP--------------------GAVLGADVHIGNFVEVK-----KATIGKGSKAGHLTYL-GDAEIG  376 (460)
T ss_pred             ecCCcccCCccccCC--------------------cCcccCCCeEeeeEEEe-----cccccCCccccceeee-ccceec
Confidence            999999999999986                    88999999999999886     6789999999888888 777888


Q ss_pred             CCcEEccceeEec-------ceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEE-ccCchhhHHHHHH
Q 025890          163 KSCMLCGQVGIAG-------SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYG-GFPAVPIHEWRRQ  233 (246)
Q Consensus       163 ~~~~i~~~~~~~~-------~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~-g~p~~~~~~~~~~  233 (246)
                      .++-|+.++...+       .++||++++||+++.+...++||+++.+++||++++|+|++++.. +.+.+.++.|.+.
T Consensus       377 ~~~NiGAGtItcNYDG~nK~~T~IGd~vFiGSns~LVAPV~IGd~a~iaAGStIT~DVp~~aLai~RarQ~~~egw~~~  455 (460)
T COG1207         377 ENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQLVAPVTIGDGATIAAGSTITKDVPEGALAISRARQTNKEGWVRK  455 (460)
T ss_pred             CCceeccceEEEcCCCcccceeeecCCcEEccCCcEEeeEEecCCcEEcccceEcccCCCCceeEeecceeeccccccc
Confidence            8888877776654       399999999999999999999999999999999999999999755 6778888888765

>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.94  E-value=2.6e-25  Score=198.70  Aligned_cols=201  Identities=21%  Similarity=0.322  Sum_probs=137.3

Q ss_pred             EeechhhhhhhcccC-------------CCceeccCc-EECCCcEEcCCcEE------CcCcEECCCcEECCCCEECCCc
Q 025890            5 VSDIESRQQFQKWHN-------------GGGIFHQSA-CIDSTVLIEVGAIV------HSKAVLGANVCIGSGTVVGPAV   64 (246)
Q Consensus         5 ~~~~~~~~~~~~~~~-------------~~~~i~~~~-~i~~~~~I~~~a~I------~~~~~i~~~~~Ig~~~~i~~~~   64 (246)
                      |.++++++.|.+.+.             ....+++++ .+++++.|++++.|      ++++.|++++.|+++|.|. ++
T Consensus       226 ~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~~~~~~i~~~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~~  304 (459)
T PRK14355        226 IMGVNDRAQLAEAARVLRRRINRELMLAGVTLIDPETTYIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIK-GC  304 (459)
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCceEECCCeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEe-CC
Confidence            777777777654411             111333332 34444444444444      4444444444444444443 45


Q ss_pred             EECCCCEECCceEEeccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEEC
Q 025890           65 TIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIG  144 (246)
Q Consensus        65 ~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig  144 (246)
                      +|++++.|++++.+.++.|++++.|++++.+.+                    .+.|++++.|+.++.+.     ++.+|
T Consensus       305 ~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~--------------------~~~i~~~~~ig~~~~~~-----~~~ig  359 (459)
T PRK14355        305 RIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRP--------------------GTELSAHVKIGNFVETK-----KIVMG  359 (459)
T ss_pred             EEcCCCEECCCeEEeCCEECCCCEECCCCEECC--------------------CCEeCCCCEECCCcccc-----CCEEC
Confidence            666666666666667777777777777777764                    67788888888777554     46777


Q ss_pred             CCCEECCCCEEccCcEECCCcEEccceeEe-------cceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCC
Q 025890          145 DHSKIDNLVQIGHNVAIGKSCMLCGQVGIA-------GSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPG  217 (246)
Q Consensus       145 ~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~-------~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~  217 (246)
                      +++.+...+.+ .++.||+++.|+.++.+.       ..+.||++|+||.++.+.++++||++++|+++|+|++|+|+++
T Consensus       360 ~~~~~~~~~~i-g~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~a~s~v~~~v~~~~  438 (459)
T PRK14355        360 EGSKASHLTYL-GDATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTVGRNSLIAAGTTVTKDVPPDS  438 (459)
T ss_pred             CCceeeeeccc-cCCEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCCcEECCCCEECCCCEEcccCCCCc
Confidence            77777666655 466777777777666542       3589999999999999999999999999999999999999999


Q ss_pred             eEEc-cCchhhHHHHH
Q 025890          218 DYGG-FPAVPIHEWRR  232 (246)
Q Consensus       218 ~~~g-~p~~~~~~~~~  232 (246)
                      ++.| .|+...+.|+.
T Consensus       439 ~~~~~~~~~~~~~~~~  454 (459)
T PRK14355        439 LAIARSPQVNKEGWKL  454 (459)
T ss_pred             EEEeccceeccccccc
Confidence            9887 56666555543

>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.94  E-value=4e-25  Score=198.55  Aligned_cols=183  Identities=20%  Similarity=0.292  Sum_probs=138.1

Q ss_pred             CcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceE-----EeccEECCCcEECCCeEECCCCce
Q 025890           27 SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVA-----LSNCIIGDSCIIHNGVCIGQDGFG  101 (246)
Q Consensus        27 ~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~-----I~~~~Ig~~~~I~~~~~i~~~~~~  101 (246)
                      .+++.+++.|++++.|++++.|++++.||++|.|++++.|. ++.|++++.     +.++.|++++.|++++.+..    
T Consensus       265 ~~~i~~~v~ig~~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~-~~~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~----  339 (482)
T PRK14352        265 TTWIDVDVTIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTLT-DVTVGEGASVVRTHGSESEIGAGATVGPFTYLRP----  339 (482)
T ss_pred             eEEEeCCEEECCCcEEeCCcEEeecCEECCCCEECCCCEEe-cCEECCCCEEeeeeeecCEEcCCCEECCCeEecC----
Confidence            45566666666666666666666666666666666555552 345555554     46777888888888887754    


Q ss_pred             eEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEec------
Q 025890          102 FFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAG------  175 (246)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~------  175 (246)
                                      .+.||+++.++.++.+.     .+.+++++.++....+ .++.||++|.|+.++.+.+      
T Consensus       340 ----------------~~vIg~~~~ig~~~~~~-----~~~I~~~~~i~~~~~i-~~~~Ig~~~~IG~~~~i~~~~~~~~  397 (482)
T PRK14352        340 ----------------GTVLGEEGKLGAFVETK-----NATIGRGTKVPHLTYV-GDADIGEHSNIGASSVFVNYDGVNK  397 (482)
T ss_pred             ----------------CcEEcCCCEECCcEEEc-----ccEECCCcEEccCcee-cccEECCCcEECCCcEEeccccccC
Confidence                            78888888888887664     4678888888776666 5677777777777766653      


Q ss_pred             -ceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeE-EccCchhhHHHHHHhhh
Q 025890          176 -SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDY-GGFPAVPIHEWRRQVAN  236 (246)
Q Consensus       176 -~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~-~g~p~~~~~~~~~~~~~  236 (246)
                       +++||++|+||.++++.++++||++++|+++|++++|+|+++++ .|+|++.+++|.+.++.
T Consensus       398 ~~~~IGd~~~iG~~~~i~~~~~Ig~~~~igags~v~~~v~~~~~~~~~~p~~~~~~~~~~~~~  460 (482)
T PRK14352        398 HRTTIGSHVRTGSDTMFVAPVTVGDGAYTGAGTVIREDVPPGALAVSEGPQRNIEGWVQRKRP  460 (482)
T ss_pred             CCCeECCCcEECCCCEEeCCCEECCCcEECCCCEEcCCCCCCcEEEecccccccccccccccc
Confidence             49999999999999999999999999999999999999999965 58999999999655543

>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.93  E-value=1.1e-24  Score=194.23  Aligned_cols=177  Identities=24%  Similarity=0.353  Sum_probs=133.0

Q ss_pred             eccCc-EECCCcEEcCCcEECcCcEECCCcEECCCCEECCCc-----EECCCCEECCceEEeccEECCCcEECCCeEECC
Q 025890           24 FHQSA-CIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAV-----TIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQ   97 (246)
Q Consensus        24 i~~~~-~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~-----~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~   97 (246)
                      +++++ .+.+++.|++++.|++++.|++++.||++|.|++++     .|+++|.|+ .+.+.++.|+++|.|++++.|.+
T Consensus       252 i~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~-~~~i~~~~ig~~~~I~~~~~I~~  330 (450)
T PRK14360        252 IDPASCTISETVELGPDVIIEPQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVL-YSVVSDSQIGDGVKIGPYAHLRP  330 (450)
T ss_pred             ecCCeEEEeCCEEECCCCEECCCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEe-eeEEeeccccCCcEECCCCEECC
Confidence            44443 355555555555555555555555555555555444     455666663 34456788999999999999974


Q ss_pred             CCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEec--
Q 025890           98 DGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAG--  175 (246)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~--  175 (246)
                                          .+.||+++.|++++.+.     ++.+++++.+..++.+ .++.|+++|.|+.++.+..  
T Consensus       331 --------------------~~~Ig~~~~Ig~~~~i~-----~~~i~~~~~i~~~~~~-~~~~i~~~~~iG~~~~~~~~~  384 (450)
T PRK14360        331 --------------------EAQIGSNCRIGNFVEIK-----KSQLGEGSKVNHLSYI-GDATLGEQVNIGAGTITANYD  384 (450)
T ss_pred             --------------------CCEEeCceEECCCEEEe-----ccccCCCcEeccceec-CCceecCCcEECccceecccc
Confidence                                68999999999999886     3678888888777666 4667777777777766543  


Q ss_pred             -----ceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhh
Q 025890          176 -----SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI  227 (246)
Q Consensus       176 -----~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~  227 (246)
                           +++||++|+||.++++.++++||++++|+++|+|++|+|+++++.|+|++.+
T Consensus       385 ~~~~~~~~Ig~~~~iG~~~~i~~~~~ig~~~~v~~~~~v~~~~~~~~~~~g~~~~~~  441 (450)
T PRK14360        385 GVKKHRTVIGDRSKTGANSVLVAPITLGEDVTVAAGSTITKDVPDNSLAIARSRQVI  441 (450)
T ss_pred             ccccCCcEeCCCeEeCCCCEEeCCcEECCCCEECCCCEECccCCCCCEEEeccceee
Confidence                 6999999999999999999999999999999999999999999999877654

>COG1043 LpxA Acyl-[acyl carrier protein]

Probab=99.93  E-value=1.8e-24  Score=169.73  Aligned_cols=200  Identities=27%  Similarity=0.346  Sum_probs=152.7

Q ss_pred             eeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCc------EECCCCEECCceEEe-------------ccEE
Q 025890           23 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAV------TIGQSTNIGFNVALS-------------NCII   83 (246)
Q Consensus        23 ~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~------~ig~~~~I~~~~~I~-------------~~~I   83 (246)
                      .+||.|.|++.|.|++++.|++.|.|+++++|++++.|.+++      .||.+++|.+.+.|.             ...|
T Consensus         5 ~IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~I   84 (260)
T COG1043           5 KIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLII   84 (260)
T ss_pred             ccCcceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEE
Confidence            455666666666665555555555555555555555555555      555555555555551             3689


Q ss_pred             CCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECC
Q 025890           84 GDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGK  163 (246)
Q Consensus        84 g~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~  163 (246)
                      |++|.|.+++.+.....             ...+.+.||+++.+.+++.+.    ++|.||++|.+..++.++.++.||+
T Consensus        85 G~~n~IRE~vTi~~GT~-------------~g~g~T~IGdnnl~May~HVA----HDC~iGn~~ilaNnatLAGHV~igD  147 (260)
T COG1043          85 GDNNTIREFVTIHRGTV-------------QGGGVTRIGDNNLIMAYAHVA----HDCVIGNNCILANNATLAGHVEVGD  147 (260)
T ss_pred             CCCCeEeeEEEEecccc-------------CCceeEEECCCCEEEEeeeee----ccceecCcEEEecCCeEeccEEECC
Confidence            99999999999975321             112378999999999999999    6799999999999999999999999


Q ss_pred             CcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCe-EEccCchhhHHHHHHhhhhhhcc
Q 025890          164 SCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGD-YGGFPAVPIHEWRRQVANQIRSS  241 (246)
Q Consensus       164 ~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~-~~g~p~~~~~~~~~~~~~~~~~~  241 (246)
                      ++.+++.+.+...++||++++||+.+-|.+|+  .+++++..+--..+.+.--.+ ..|.+.+.+..++++++.+.+-.
T Consensus       148 ~aiiGG~saVHQFvrIG~~amiGg~S~v~~DV--pPy~~~~Gn~a~l~GlN~vGlkRrgf~~e~i~alr~ayk~lfr~~  224 (260)
T COG1043         148 YAIIGGLSAVHQFVRIGAHAMIGGLSAVSQDV--PPYVIASGNHARLRGLNIVGLKRRGFSREEIHALRKAYKLLFRSG  224 (260)
T ss_pred             EEEEcCcceEEEEEEEcchheeccccccccCC--CCeEEecCCcccccccceeeeeccCCCHHHHHHHHHHHHHHeeCC
Confidence            99999999999999999999999999999994  578887777655555555554 56899999999988888776643

>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

Probab=99.92  E-value=1.4e-23  Score=173.42  Aligned_cols=200  Identities=26%  Similarity=0.311  Sum_probs=158.3

Q ss_pred             CceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEe-------------ccEECCCc
Q 025890           21 GGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-------------NCIIGDSC   87 (246)
Q Consensus        21 ~~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~-------------~~~Ig~~~   87 (246)
                      .+.++++++|++++.|++++.|++++.|++++.|+++|.|.+++.||+++.|++++.|.             .+.||++|
T Consensus         4 ~a~I~~~a~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~   83 (254)
T TIGR01852         4 TAIIEPGAEIGENVEIGPFCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNN   83 (254)
T ss_pred             CCEeCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCC
Confidence            45567777777777778888888888888888888888888888889999999999885             58899999


Q ss_pred             EECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEE
Q 025890           88 IIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCML  167 (246)
Q Consensus        88 ~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i  167 (246)
                      .|++++.|......             ....+.||+++.|++++++.    +++.||+++.++.++.+.++++||+++++
T Consensus        84 ~I~~~~~I~~~~~~-------------~~~~~~IG~~~~I~~~~~I~----~~~~Ig~~~~i~~~~~i~~~~~Igd~~~I  146 (254)
T TIGR01852        84 TIREFVTINRGTAS-------------GGGVTRIGNNNLLMAYSHIA----HDCVVGNHVILANNATLAGHVEVGDYAII  146 (254)
T ss_pred             EECCCCEECCcccC-------------CCCcEEECCCCEECCCCEEc----cCCEECCCCEECCCCEECCCcEECCCcEE
Confidence            99999999753210             00278999999999999997    46999999999999999999999999999


Q ss_pred             ccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCC-eEEccCchhhHHHHHHhhhhhh
Q 025890          168 CGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPG-DYGGFPAVPIHEWRRQVANQIR  239 (246)
Q Consensus       168 ~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~-~~~g~p~~~~~~~~~~~~~~~~  239 (246)
                      +.++.+.++++|+++++|+++++|.++  |++++++...+...+...... ...+.+.....++.+.++.+.+
T Consensus       147 g~~~~i~~~v~Ig~~~~Ig~~s~V~~~--i~~~~~~~G~pa~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  217 (254)
T TIGR01852       147 GGLVAVHQFVRIGRYAMIGGLSAVSKD--VPPYGLVEGNRARLRGLNIVGLRRRGFSREDITAIKKAYRLLFR  217 (254)
T ss_pred             eccCEECCCcEECCCCEEeeeeeEeee--cCCCcEEecCcCeecccceeeeecCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999987  889999877655443322112 2345555555555554444443

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).

>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.92  E-value=1.6e-23  Score=187.18  Aligned_cols=177  Identities=16%  Similarity=0.184  Sum_probs=140.2

Q ss_pred             eccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeE
Q 025890           24 FHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFF  103 (246)
Q Consensus        24 i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~  103 (246)
                      +++++.+++++.|..++.|++++.|++++.|+++|.|. +++|+++|.|++++.|.+++|+++|.|++++.|.+      
T Consensus       266 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~------  338 (456)
T PRK14356        266 IGPRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLR-DAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRP------  338 (456)
T ss_pred             ECCCcEECCCCEEeCCcEEeCceEECCCCEECCCeEEE-eeEECCCCEEeeeEEEcccceecccEECCceEECC------
Confidence            34445555555555555555566677777777777774 57888888888888888899999999999999864      


Q ss_pred             EcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEe-------cc
Q 025890          104 VDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIA-------GS  176 (246)
Q Consensus       104 ~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~-------~~  176 (246)
                                    ++.+|+++.++.++.+.     ++.+++++.+...+.++ ++.||+++.++.++...       .+
T Consensus       339 --------------~~~ig~~~~ig~~~~i~-----~~~i~~~~~i~~~~~ig-~~~ig~~~~Ig~~~~~~~~~~~~~~~  398 (456)
T PRK14356        339 --------------GAVLEEGARVGNFVEMK-----KAVLGKGAKANHLTYLG-DAEIGAGANIGAGTITCNYDGVNKHR  398 (456)
T ss_pred             --------------CCEECCCCEecCCceee-----eeEecCCcEeccccccc-CeEECCCCEECCCceeeccccccCCC
Confidence                          67889999999888875     46788888888877774 57888888887776542       35


Q ss_pred             eEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhh
Q 025890          177 ATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI  227 (246)
Q Consensus       177 ~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~  227 (246)
                      ++||+++++|.++.+.++++||++++|+++|+|++|+|+++++.|......
T Consensus       399 ~~igd~~~ig~~~~i~~~~~ig~~~~i~~~~~v~~~~~~~~~~~~~~~~~~  449 (456)
T PRK14356        399 TVIGEGAFIGSNTALVAPVTIGDGALVGAGSVITKDVPDGSLAIARGRQKN  449 (456)
T ss_pred             CEECCCcEEcCCCEEeCCcEECCCCEEcCCCEEeccCCCCcEEEEecceee
Confidence            899999999999999999999999999999999999999999887765444

>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]

Probab=99.92  E-value=7.5e-24  Score=175.28  Aligned_cols=181  Identities=26%  Similarity=0.347  Sum_probs=156.3

Q ss_pred             CCceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEE-eccEECCCcEECCCeEECCC
Q 025890           20 GGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQD   98 (246)
Q Consensus        20 ~~~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~   98 (246)
                      ....+++.+.+.+.+.+++++.|+++++|++++.||+++.|.++++|++++.||+++.| .+++|+.++.||.+|.|++ 
T Consensus        98 ~~~~I~~~A~i~~~A~i~~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~-  176 (338)
T COG1044          98 PAAGIHPTAVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHS-  176 (338)
T ss_pred             cccccCccccccCcCccCCCCccCCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECC-
Confidence            34567888999999999999999999999999999999999999999999999999988 7888888888888888886 


Q ss_pred             CceeEEcCCCceeecCcccceEECCCcEECcccEEcCCC---ccCeEECCCCEECCCCEEccC----cEECCCcEEccce
Q 025890           99 GFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGS---WRDTVIGDHSKIDNLVQIGHN----VAIGKSCMLCGQV  171 (246)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~---~~~~~ig~~~~v~~~~~i~~~----~~Ig~~~~i~~~~  171 (246)
                                         .+.||.+.+....+.+....   .+.+.|++++.+|.|+.|.+.    +.|++++.|...+
T Consensus       177 -------------------GavIG~dgFg~a~~~~g~~Ki~q~g~V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN~v  237 (338)
T COG1044         177 -------------------GAVIGADGFGYAGTAIGWVKIPQIGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLV  237 (338)
T ss_pred             -------------------CCEEccCccccccccCCceEcceeceEEECCceEEcccceeccccccCceecCCcEEccee
Confidence                               78888888888776555111   157899999999999999877    9999999999999


Q ss_pred             eEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEecc--CCCCCeEE
Q 025890          172 GIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKD--ITEPGDYG  220 (246)
Q Consensus       172 ~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~--~~~~~~~~  220 (246)
                      .+..+|+||++|.|.+++-+.+.+.||++++++..+.+...  +-+++.+.
T Consensus       238 qIaHnv~IG~~~~I~~~vgIaGs~~IG~~v~igg~vgI~gh~~IgD~~~I~  288 (338)
T COG1044         238 QIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQVGIAGHLEIGDGVTIG  288 (338)
T ss_pred             EEccccEECCCcEEeccceeeccceECCeEEECcceeecCceEEcCCCEEe
Confidence            99999999999999999999999999999999999998864  45666554

>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.92  E-value=8.8e-24  Score=188.39  Aligned_cols=179  Identities=20%  Similarity=0.268  Sum_probs=142.8

Q ss_pred             eeccC-cEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEE-----eccEECCCcEECCCeEEC
Q 025890           23 IFHQS-ACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-----SNCIIGDSCIIHNGVCIG   96 (246)
Q Consensus        23 ~i~~~-~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I-----~~~~Ig~~~~I~~~~~i~   96 (246)
                      .++++ +.+++++.|++++.|++++.|++++.||++|+|++++.|. ++.|+++|.|     .++.|++++.|++++.|.
T Consensus       244 ~~~~~~~~i~~~~~Ig~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~-~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~  322 (448)
T PRK14357        244 ILDPNTTYIHYDVEIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRIV-DCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLR  322 (448)
T ss_pred             EeCCCcEEEccceEECCCcEEcCCcEEEeeeEECCCcEECCCceec-ccEECCCCEEeeeEEEEEEEeCCcEECCCcEEC
Confidence            35553 5788888888888888888888888888888888877664 3666666666     567888888888888886


Q ss_pred             CCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEe--
Q 025890           97 QDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIA--  174 (246)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~--  174 (246)
                      .                    .+.||+++.|++++.+.     .+.|++++.+...+.+ .++.||+++.|+.++.+.  
T Consensus       323 ~--------------------~~~ig~~~~Ig~~~~i~-----~~~ig~~~~~~~~~~~-~~~~Ig~~~~ig~~~~~~~~  376 (448)
T PRK14357        323 E--------------------GTVLKKSVKIGNFVEIK-----KSTIGENTKAQHLTYL-GDATVGKNVNIGAGTITCNY  376 (448)
T ss_pred             C--------------------cccccCCcEecCceeee-----ccEEcCCcCccccccc-cCcEECCCcEECCCcccccc
Confidence            3                    68899999999888775     3677777777666555 356666666666665543  


Q ss_pred             -----cceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhhH
Q 025890          175 -----GSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIH  228 (246)
Q Consensus       175 -----~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~  228 (246)
                           .+++|||+++||.+++|.++++||+++.|+++|++++|+|+++++.|+|++...
T Consensus       377 ~~~~~~~~~Igd~~~ig~~~~i~~gv~Ig~~~~i~ag~~v~~~v~~~~~~~g~~~~~~~  435 (448)
T PRK14357        377 DGKKKNPTFIEDGAFIGSNSSLVAPVRIGKGALIGAGSVITEDVPPYSLALGRARQIVK  435 (448)
T ss_pred             cccccCCcEECCCCEECCCCEEeCCcEECCCCEEcCCCEECCcCCCCcEEEccccEEec
Confidence                 359999999999999999999999999999999999999999999999997754

>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.92  E-value=1.7e-23  Score=186.41  Aligned_cols=158  Identities=20%  Similarity=0.292  Sum_probs=110.2

Q ss_pred             cCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECC
Q 025890           44 SKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGN  123 (246)
Q Consensus        44 ~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~  123 (246)
                      +.+.|++++.|+++++|++++.|+++|.|++++.|.++.||++|.|++++.|.+                    ++.||+
T Consensus       267 ~~~~I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~--------------------~~~ig~  326 (446)
T PRK14353        267 YDTVIGRDVVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRP--------------------GAELGE  326 (446)
T ss_pred             CceEECCCCEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEec--------------------cceecC
Confidence            333444444444444444444455555555555565666667777777776653                    566777


Q ss_pred             CcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeE-------ecceEECCCeEECcCcEECCCcE
Q 025890          124 HVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGI-------AGSATIGDYVTLGGRVAVRDHVS  196 (246)
Q Consensus       124 ~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~-------~~~~~Ig~~~~Ig~~~~v~~~~~  196 (246)
                      ++.|++++.+.     ++.+++++.++.++.+ .++.||+++.++.++.+       ..+++||++|+||+++++.++++
T Consensus       327 ~~~Ig~~~~i~-----~~~i~~~~~i~~~~~i-~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~  400 (446)
T PRK14353        327 GAKVGNFVEVK-----NAKLGEGAKVNHLTYI-GDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAPVT  400 (446)
T ss_pred             CeEEcCceEEe-----ceEECCCCEECCeeEE-cCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCCCE
Confidence            77777776664     3566666666665555 44566666666665544       23689999999999999999999


Q ss_pred             ECCCCEEccCcEEeccCCCCCeEEccCchhh
Q 025890          197 IASKVRLAANSCVFKDITEPGDYGGFPAVPI  227 (246)
Q Consensus       197 ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~  227 (246)
                      ||++++|+++|+|++|+|+++++.|.|....
T Consensus       401 Ig~~~~ig~~s~v~~~v~~~~~~~g~~~~~~  431 (446)
T PRK14353        401 IGDGAYIASGSVITEDVPDDALALGRARQET  431 (446)
T ss_pred             ECCCCEECCCCEECccCCCCCEEEecCceEe
Confidence            9999999999999999999999999988553

>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.92  E-value=3.5e-23  Score=184.98  Aligned_cols=183  Identities=22%  Similarity=0.350  Sum_probs=143.6

Q ss_pred             cEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCc-----EECCCCEECCceEEeccEECCCcEECCCeEECCCCcee
Q 025890           28 ACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAV-----TIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGF  102 (246)
Q Consensus        28 ~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~-----~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~  102 (246)
                      +.+.+++.|++++.|++++.|++++.|+++|.|++++     .|+++|.|+ ++.+.++.||++|.|++++.|..     
T Consensus       260 ~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~-~~~i~~~~ig~~~~Ig~~~~i~~-----  333 (458)
T PRK14354        260 TYIDADVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTIT-NSVIEESKVGDNVTVGPFAHLRP-----  333 (458)
T ss_pred             EEECCCcEECCCCEEeCCeEEecceEECCCCEECCCcEEeccEECCCCEEE-EEEEeCCEECCCcEECCceEecC-----
Confidence            4566666666666666666665555555555555555     555566665 34456788899999999988874     


Q ss_pred             EEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEec-------
Q 025890          103 FVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAG-------  175 (246)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~-------  175 (246)
                                     .+.||+++.++.++.+.     ++.+++++.++..+.+ .++.||+++.++.++.+.+       
T Consensus       334 ---------------~~~Ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~~-~~~~ig~~~~ig~~~~~~~~~~~~~~  392 (458)
T PRK14354        334 ---------------GSVIGEEVKIGNFVEIK-----KSTIGEGTKVSHLTYI-GDAEVGENVNIGCGTITVNYDGKNKF  392 (458)
T ss_pred             ---------------CCEEeCCcEECCceEEe-----eeEECCCCEecceeee-cCcccCCceEEcCceeeccccccccc
Confidence                           78899999999999886     4788999998888777 6788888888888887654       


Q ss_pred             ceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchh-hHHHHHHhhhh
Q 025890          176 SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVP-IHEWRRQVANQ  237 (246)
Q Consensus       176 ~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~-~~~~~~~~~~~  237 (246)
                      +++|+|++++|.++.+.++++||++++|+++|+|++|+|+++++.|.|+.. ++-|.+...++
T Consensus       393 ~~~igd~~~ig~~s~i~~~~~ig~~~~v~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  455 (458)
T PRK14354        393 KTIIGDNAFIGCNSNLVAPVTVGDNAYIAAGSTITKDVPEDALAIARARQVNKEGYVKKLPHK  455 (458)
T ss_pred             CCEECCCcEEccCCEEeCCcEECCCCEECCCCEECCCCCCCCEEEeccceecccchhhhhhhh
Confidence            699999999999999999999999999999999999999999999998754 55666655543

>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.91  E-value=3.5e-23  Score=185.60  Aligned_cols=169  Identities=18%  Similarity=0.234  Sum_probs=138.0

Q ss_pred             ccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeEE
Q 025890           25 HQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFV  104 (246)
Q Consensus        25 ~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~  104 (246)
                      .+++.|++++.|++++.|.+++.|+++++|+++|.|+ +++|+++|.|++++.|.++.||+++.|++++.+..       
T Consensus       268 ~~~~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~-~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~-------  339 (481)
T PRK14358        268 EDTVTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVT-DSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRP-------  339 (481)
T ss_pred             cCCcEECCCCEEeCCcEEeCCcEECCCCEECCCCEEe-eeEECCCCEEeecceecCCeEeCceEECCccEEcC-------
Confidence            4555666666677777777777777777777777774 57888889999998888899999999999998864       


Q ss_pred             cCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEec-------ce
Q 025890          105 DEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAG-------SA  177 (246)
Q Consensus       105 ~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~-------~~  177 (246)
                                   .+.||+++.|++++.+.     ++.|++++.++..+.+ .+++||++|.++.++++.+       .+
T Consensus       340 -------------~~~Ig~~~~Ig~~~~i~-----~~~i~~~~~ig~~~~~-~~~~ig~~~~ig~~~~i~~~~~~~~~~~  400 (481)
T PRK14358        340 -------------GTVLGEGVHIGNFVETK-----NARLDAGVKAGHLAYL-GDVTIGAETNVGAGTIVANFDGVNKHQS  400 (481)
T ss_pred             -------------CcEECCCCEECCCEEEC-----CceecCCcccCceEEE-CCeEEcCCceEcCCEEEeCCCCccCCCC
Confidence                         78999999999988875     4567777777776555 5577777777777766653       47


Q ss_pred             EECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEE
Q 025890          178 TIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYG  220 (246)
Q Consensus       178 ~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~  220 (246)
                      .||++|+||+++++.++++||++++|+++|++++|+|++..+.
T Consensus       401 ~Ig~~~~ig~~~~i~~~~~Ig~~~~i~~gs~v~~~v~~~~~~~  443 (481)
T PRK14358        401 KVGAGVFIGSNTTLIAPRVVGDAAFIAAGSAVHDDVPEGAMAV  443 (481)
T ss_pred             EECCCeEEcCCCEEcCCcEECCCCEECCCCEEecccCCCCEEE
Confidence            9999999999999999999999999999999999999999765

>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.91  E-value=5.8e-23  Score=170.12  Aligned_cols=200  Identities=24%  Similarity=0.310  Sum_probs=144.3

Q ss_pred             CCceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEe-------------ccEECCC
Q 025890           20 GGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-------------NCIIGDS   86 (246)
Q Consensus        20 ~~~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~-------------~~~Ig~~   86 (246)
                      ..+.+++++.|++++.|++++.|++++.|++++.|++++.|.++++||++|.|++++.|.             .+.||++
T Consensus         7 p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~   86 (262)
T PRK05289          7 PTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDN   86 (262)
T ss_pred             CCCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEECCC
Confidence            344555555555666666666666666666666666666666677777777777777774             4788889


Q ss_pred             cEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcE
Q 025890           87 CIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCM  166 (246)
Q Consensus        87 ~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~  166 (246)
                      |.|++++.|.....             .....+.||+++.|++++.|.    +++.+|+++.+..++.+..++.||++++
T Consensus        87 ~~I~e~~~I~~~~~-------------~~~~~t~IG~~~~I~~~~~I~----h~~~IG~~v~i~~~~~i~g~v~Igd~~~  149 (262)
T PRK05289         87 NTIREFVTINRGTV-------------QGGGVTRIGDNNLLMAYVHVA----HDCVVGNHVILANNATLAGHVEVGDYAI  149 (262)
T ss_pred             CEECCCeEEecccc-------------cCCCeeEECCceEECCCCEEC----CeEEECCCeEECCccccccccccCCcEE
Confidence            99998888864210             001257899999999999998    5699999999999999999999999999


Q ss_pred             EccceeEecceEECCCeEECcCcEECCCcEECCCCEEccC-cEEeccCCCCC-eEEccCchhhHHHHHHhhhhhh
Q 025890          167 LCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN-SCVFKDITEPG-DYGGFPAVPIHEWRRQVANQIR  239 (246)
Q Consensus       167 i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~-s~v~~~~~~~~-~~~g~p~~~~~~~~~~~~~~~~  239 (246)
                      ++.++.+..+++||++++|+++++|.++  |.+++++... +.+.. +..-. ...|.+...+..+.++++.+.+
T Consensus       150 Ig~~~~i~~~v~Ig~~~~Ig~gs~V~~d--i~~~~~~~G~pa~~~~-~n~~g~~~~~~~~~~~~~i~~a~~~~~~  221 (262)
T PRK05289        150 IGGLTAVHQFVRIGAHAMVGGMSGVSQD--VPPYVLAEGNPARLRG-LNLVGLKRRGFSREEIHALRRAYKLLYR  221 (262)
T ss_pred             EeecceecCCCEECCCCEEeeecceecc--CCCCeEEecccCeEec-cchhhhhhCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999988  4677766443 33321 22111 2345555666655555554444

>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.91  E-value=2e-23  Score=185.10  Aligned_cols=199  Identities=22%  Similarity=0.246  Sum_probs=143.4

Q ss_pred             EEeechhhhhhhcccCCCc-ee-----ccCc--EECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCc
Q 025890            4 YVSDIESRQQFQKWHNGGG-IF-----HQSA--CIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFN   75 (246)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~-~i-----~~~~--~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~   75 (246)
                      +|.++.+++.+.+...... .+     ..+.  ...+.+.+.++++|.+++.|+++++|+++|.|. ++.|+++|+|++ 
T Consensus       216 ~w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~-  293 (430)
T PRK14359        216 NFMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEGECELEEGVRILGKSKIE-NSHIKAHSVIEE-  293 (430)
T ss_pred             EEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcCceEECCCCEECCCeEEE-eeEECCCCEEec-
Confidence            7888888887654432100 00     0111  223455567777777788888888888888887 888888888877 


Q ss_pred             eEEeccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEE
Q 025890           76 VALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQI  155 (246)
Q Consensus        76 ~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i  155 (246)
                      +.+.++.||+++.|++++.|.                     ++.||+++.|+... +.     ++.++..+.+++ +.|
T Consensus       294 ~~i~~~~ig~~~~i~~~~~i~---------------------~~~ig~~~~i~~~~-~~-----~~~i~~~~~i~d-~~I  345 (430)
T PRK14359        294 SIIENSDVGPLAHIRPKSEIK---------------------NTHIGNFVETKNAK-LN-----GVKAGHLSYLGD-CEI  345 (430)
T ss_pred             cEEeCCEECCCCEECCCcEEe---------------------ccEEcCcEEEcccE-ec-----cccccccccccC-CEE
Confidence            667888999999999888885                     77888888887743 32     245555555543 444


Q ss_pred             ccCcEECCCcEEccceeEec-ceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEc-cCchhhHHHHH
Q 025890          156 GHNVAIGKSCMLCGQVGIAG-SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGG-FPAVPIHEWRR  232 (246)
Q Consensus       156 ~~~~~Ig~~~~i~~~~~~~~-~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g-~p~~~~~~~~~  232 (246)
                      ++++.||.++.+..+....+ .+.||++|+||+++++.++++||++++|+++|+|.+|+|+++++.| .|++.++.|..
T Consensus       346 g~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g~~v~~~v~~~~~~~~~~~~~~~~~~~~  424 (430)
T PRK14359        346 DEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAPVNIEDNVLIAAGSTVTKDVPKGSLAISRAPQKNIKNFYY  424 (430)
T ss_pred             CCCCEECCCceEccccCccCcCCEECCCeEEcCCCEEeCCcEECCCCEECCCCEEccccCCCcEEEeccCceehhhHHH
Confidence            44444444444433322222 4899999999999999999999999999999999999999998765 89999988854

>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.91  E-value=1.1e-22  Score=167.14  Aligned_cols=200  Identities=22%  Similarity=0.296  Sum_probs=148.7

Q ss_pred             CceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEe-------------ccEECCCc
Q 025890           21 GGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-------------NCIIGDSC   87 (246)
Q Consensus        21 ~~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~-------------~~~Ig~~~   87 (246)
                      .+.+++++.|++++.|++++.|++++.|++++.|++++.|.+++.||+++.|++++.|.             .+.||++|
T Consensus         5 ~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~~   84 (255)
T PRK12461          5 TAVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDRN   84 (255)
T ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECCce
Confidence            34555666666666666666666666666666666666666677777777777777773             36788888


Q ss_pred             EECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEE
Q 025890           88 IIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCML  167 (246)
Q Consensus        88 ~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i  167 (246)
                      .|++++.|....+              ....+.||+++.+.+++.|.    +++.||+++.++.++.+..++.||+++++
T Consensus        85 ~I~e~vtI~~gt~--------------~g~~t~IG~~~~i~~~~~I~----hd~~IG~~v~i~~~~~i~g~v~Igd~a~I  146 (255)
T PRK12461         85 VIREGVTIHRGTK--------------GGGVTRIGNDNLLMAYSHVA----HDCQIGNNVILVNGALLAGHVTVGDRAII  146 (255)
T ss_pred             EECCccEEecCcc--------------cCCcEEEcccceeccCcEEC----CCCEECCCcEECCCCccCCceEECCCeEE
Confidence            8888888864211              01268889999998888887    46999999999999999999999999999


Q ss_pred             ccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCC-eEEccCchhhHHHHHHhhhhhhc
Q 025890          168 CGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPG-DYGGFPAVPIHEWRRQVANQIRS  240 (246)
Q Consensus       168 ~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~-~~~g~p~~~~~~~~~~~~~~~~~  240 (246)
                      +.++.+..+++||++++|+++++|.++  |++++++.....-...+..-. ...|.+...++.+.++++.+.+-
T Consensus       147 g~~a~V~~~~~IG~~a~Vg~gs~V~~d--Vpp~~i~~G~pa~~~~~n~vgl~r~g~~~~~~~~~~~~~~~~~~~  218 (255)
T PRK12461        147 SGNCLVHQFCRIGALAMMAGGSRISKD--VPPYCMMAGHPTNVHGLNAVGLRRRGFSSRAIRALKRAYKIIYRS  218 (255)
T ss_pred             eCCCEECCCCEECCCcEECCCceEecc--CCCCeEEecCcceEeccchhhhhhcCCCHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999  578887765533222333222 23467777777777777666554

>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

Probab=99.90  E-value=3.1e-22  Score=170.16  Aligned_cols=81  Identities=30%  Similarity=0.443  Sum_probs=60.8

Q ss_pred             cceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcE
Q 025890          117 LNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVS  196 (246)
Q Consensus       117 ~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~  196 (246)
                      ..+.||+++.|+..+.|.    +++.||+++.+..++.+.++++||++++++.++.+.+++.||++|+|++++.|.+++ 
T Consensus       216 ~~t~Ig~~~~I~n~v~I~----~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I~~~v~Ig~~~~ig~~s~V~~~v-  290 (324)
T TIGR01853       216 DDTIIGEGTKIDNLVQIA----HNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIGDNVTIGAKSGVTKSI-  290 (324)
T ss_pred             CcceecCCcEEccCcEEC----CCCEECCCcEECCcceEcCccEECCCeEEccccccccCCEECCCCEEccCCEeCCcC-
Confidence            367777777777777776    357788888888888888888888888888888888888888888888888887763 


Q ss_pred             ECCCCEE
Q 025890          197 IASKVRL  203 (246)
Q Consensus       197 ig~~~~v  203 (246)
                       ++++++
T Consensus       291 -~~~~~~  296 (324)
T TIGR01853       291 -PPPGVY  296 (324)
T ss_pred             -CCCcEE
Confidence             444444

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).

>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

Probab=99.89  E-value=5.3e-22  Score=170.70  Aligned_cols=159  Identities=35%  Similarity=0.475  Sum_probs=115.6

Q ss_pred             CCCceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEE-e------------------
Q 025890           19 NGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-S------------------   79 (246)
Q Consensus        19 ~~~~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I-~------------------   79 (246)
                      ..+..+++.+.|++++.|++++.|.+++.|+++++||++|.|++++.|++++.|+++|.| .                  
T Consensus       116 g~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~~~~~~~~~  195 (343)
T PRK00892        116 GEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIGSDGFGFANDRGGW  195 (343)
T ss_pred             CCCCEECCCeEEeccceeCCCcEECCCCEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEEeccCcCcccCCCce
Confidence            344455555556666666666666666666666666666666655555444444444444 2                  


Q ss_pred             -------ccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCC
Q 025890           80 -------NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNL  152 (246)
Q Consensus        80 -------~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~  152 (246)
                             ++.||+++.|++++.|..                .....++||+++.++..+.|.    +++.||+++.+..+
T Consensus       196 ~~~~~~g~v~Ig~~v~IGa~~~I~~----------------~~~~~t~Ig~~~~i~~~v~I~----~~~~IG~~~~i~~~  255 (343)
T PRK00892        196 VKIPQLGRVIIGDDVEIGANTTIDR----------------GALDDTVIGEGVKIDNLVQIA----HNVVIGRHTAIAAQ  255 (343)
T ss_pred             eeccccccEEECCCcEECCCcEEec----------------CccccceeCCCCEEeCCeEEc----cCCEECCCcEEeee
Confidence                   245556666666655542                122378999999999999998    46999999999999


Q ss_pred             CEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEE
Q 025890          153 VQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI  197 (246)
Q Consensus       153 ~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~i  197 (246)
                      +.+.+++.||++++++.++.+.++++||++++|++++.+.+++..
T Consensus       256 ~~i~~~~~iG~~~~ig~~~~i~~~~~ig~~~~i~~~s~v~~~i~~  300 (343)
T PRK00892        256 VGIAGSTKIGRYCMIGGQVGIAGHLEIGDGVTITAMSGVTKSIPE  300 (343)
T ss_pred             eeecCCCEECCceEECCCCEEcCCCEECCCCEEecCCeeCCccCC
Confidence            999999999999999999999999999999999999999988654

>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

Probab=99.87  E-value=4.6e-20  Score=147.87  Aligned_cols=171  Identities=30%  Similarity=0.435  Sum_probs=132.5

Q ss_pred             cCCCceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEE-eccEECC-----------
Q 025890           18 HNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGD-----------   85 (246)
Q Consensus        18 ~~~~~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I-~~~~Ig~-----------   85 (246)
                      +.+...+++.+++.+++.|+++++|++++.|+++++|+++|+|.+++.|+.++.|++++.| .++.|+.           
T Consensus         4 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~   83 (205)
T cd03352           4 IGENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGG   83 (205)
T ss_pred             ECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEcCCCceeEecCCc
Confidence            4556778888888888888888888888888888888888888888877777777777777 3355532           


Q ss_pred             --------CcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEcc
Q 025890           86 --------SCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGH  157 (246)
Q Consensus        86 --------~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~  157 (246)
                              .+.|++++.++....          ........+.||+++.++.++.+..    .+.+++++.++.++.+.+
T Consensus        84 ~~~~~~~~~v~Ig~~~~Ig~~~~----------i~~~~~~~~~Ig~~~~i~~~v~I~~----~~~ig~~~~i~~~~~i~~  149 (205)
T cd03352          84 WVKIPQLGGVIIGDDVEIGANTT----------IDRGALGDTVIGDGTKIDNLVQIAH----NVRIGENCLIAAQVGIAG  149 (205)
T ss_pred             EEEcCCcceEEECCCEEECCCCE----------EeccccCCeEECCCCEECCceEEeC----CCEECCCCEECCCCEEcc
Confidence                    344555555543210          0111123688999999999999984    589999999999999999


Q ss_pred             CcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEc
Q 025890          158 NVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLA  204 (246)
Q Consensus       158 ~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~  204 (246)
                      ++.||++++++.++.+..+++|+++++|++++++.++  ++++.++.
T Consensus       150 ~~~Ig~~~~ig~~~~v~~~~~ig~~~~i~~~s~v~~~--~~~~~~~~  194 (205)
T cd03352         150 STTIGDNVIIGGQVGIAGHLTIGDGVVIGAGSGVTSI--VPPGEYVS  194 (205)
T ss_pred             ccEECCCeEEcCCCEEeCCcEECCCCEEcCCCEEeeE--CCCCCEEE
Confidence            9999999999999999999999999999999999955  55666554

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]

Probab=99.85  E-value=1.5e-20  Score=142.73  Aligned_cols=75  Identities=25%  Similarity=0.279  Sum_probs=60.1

Q ss_pred             CcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEec--cCCCCCeEEccCchhhHHHHHH
Q 025890          158 NVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFK--DITEPGDYGGFPAVPIHEWRRQ  233 (246)
Q Consensus       158 ~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~--~~~~~~~~~g~p~~~~~~~~~~  233 (246)
                      .++||+++.|++++++.+ |+|+++|+||.+|+|+.+++||++|+|+++|+|+.  .+|+++++.|.|+|.++++.+.
T Consensus        72 p~~IG~~vtIGH~aivHG-c~Ig~~~lIGmgA~vldga~IG~~~iVgAgalV~~~k~~p~~~L~~G~Pak~~r~l~~~  148 (176)
T COG0663          72 PVTIGDDVTIGHGAVVHG-CTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIPGGSLVVGSPAKVVRPLDDE  148 (176)
T ss_pred             CeEECCCcEEcCccEEEE-eEECCCcEEecCceEeCCcEECCCcEEccCCcccCCcCCCCCeEeecCcceeeecCChh
Confidence            344444444444445555 88999999999999999999999999999999985  7899999999999999877543

>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains

Probab=99.85  E-value=1.2e-19  Score=140.22  Aligned_cols=155  Identities=22%  Similarity=0.337  Sum_probs=107.8

Q ss_pred             CCCceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCC
Q 025890           19 NGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQD   98 (246)
Q Consensus        19 ~~~~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~   98 (246)
                      ..+..+.+.+++++++.|++++.|.++++|++++.|++++.|.++++|+++|.|++++.|.++.|++++.|++++.+.  
T Consensus         9 ~~~~~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~--   86 (163)
T cd05636           9 EEGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVG--   86 (163)
T ss_pred             CCCCEECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEe--
Confidence            334456666777777777777777777777778888888888777788888888888888778888888888777775  


Q ss_pred             CceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceE
Q 025890           99 GFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSAT  178 (246)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~  178 (246)
                                         +++|++++.|++++++....+....+    .+..   .++....+..         ..++.
T Consensus        87 -------------------~siIg~~~~I~~~~~i~~~~~~~~~~----~~~~---~~~~~~~~~~---------~~~~i  131 (163)
T cd05636          87 -------------------DSVLGENVNLGAGTITANLRFDDKPV----KVRL---KGERVDTGRR---------KLGAI  131 (163)
T ss_pred             -------------------cCEECCCCEECCCcEEcccCcCCcce----EEEe---cCcceecCCc---------ccCcE
Confidence                               67788888888887765431110000    0000   0011111110         12489


Q ss_pred             ECCCeEECcCcEECCCcEECCCCEEccCcEEe
Q 025890          179 IGDYVTLGGRVAVRDHVSIASKVRLAANSCVF  210 (246)
Q Consensus       179 Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~  210 (246)
                      |+++++||.++.+.+++.|++++.|+++++|.
T Consensus       132 Ig~~~~ig~~~~i~~g~~ig~~~~i~agsvV~  163 (163)
T cd05636         132 IGDGVKTGINVSLNPGVKIGPGSWVYPGCVVR  163 (163)
T ss_pred             EcCCeEECCCcEECCCcEECCCCEECCCcEeC
Confidence            99999999999999999999999999999873

Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family

Probab=99.84  E-value=1.6e-19  Score=143.88  Aligned_cols=57  Identities=30%  Similarity=0.317  Sum_probs=53.8

Q ss_pred             ecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhhHHH
Q 025890          174 AGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEW  230 (246)
Q Consensus       174 ~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~~  230 (246)
                      ..++.||++|+||.++++.++++||++++|+++++|++++|+++++.|+||+.++.+
T Consensus       106 ~~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~v~~~i~~~~~~~G~Pa~~~~~~  162 (204)
T TIGR03308       106 AKRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVVTKDVAPYTIVAGVPAKLIRRR  162 (204)
T ss_pred             CCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCCCCcEEEecCchHhhhc
Confidence            356899999999999999999999999999999999999999999999999998765

This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.

>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase

Probab=99.84  E-value=3.9e-20  Score=150.03  Aligned_cols=140  Identities=21%  Similarity=0.302  Sum_probs=99.2

Q ss_pred             CCCEECCceEE-eccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCC
Q 025890           68 QSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDH  146 (246)
Q Consensus        68 ~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~  146 (246)
                      .++.|++++.| .++.||+++.|++++.|..                    ++.||+++.|++++.|..    .+.|+++
T Consensus        85 ~~~~I~~~a~I~g~v~IG~~~~I~~~~~I~~--------------------~~~IG~~~~I~~~a~I~~----~s~Ig~~  140 (231)
T TIGR03532        85 INARIEPGAIIRDQVIIGDNAVIMMGAVINI--------------------GAEIGEGTMIDMNAVLGG----RATVGKN  140 (231)
T ss_pred             cccEECCCCEEeCCeEECCCCEEecCcccCC--------------------CeEECCCCEEccccccCC----CcEECCC
Confidence            44444444444 4567777777777776653                    566777777766665542    2444444


Q ss_pred             CEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchh
Q 025890          147 SKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVP  226 (246)
Q Consensus       147 ~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~  226 (246)
                      |.++.++.+...  ++..        ...++.|+++|+||+++++.+++.|+++++|++++++.+++|+++++.|+||+.
T Consensus       141 ~~Ig~~~~I~~~--~~~~--------~~~~v~IGd~v~IG~gsvI~~g~~Ig~~~~IgagsvV~~di~~~~vv~G~PA~~  210 (231)
T TIGR03532       141 VHIGAGAVLAGV--IEPP--------SAKPVVIEDNVLIGANAVILEGVRVGKGAVVAAGAIVTEDVPPNTVVAGVPAKV  210 (231)
T ss_pred             cEEcCCcEEccc--cccc--------cCCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEccccCCCcEEEecCCEE
Confidence            444444444220  1100        023689999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhhhhhcc
Q 025890          227 IHEWRRQVANQIRSS  241 (246)
Q Consensus       227 ~~~~~~~~~~~~~~~  241 (246)
                      ++.+++.+..+.+|.
T Consensus       211 i~~~~~~~~~~~~~~  225 (231)
T TIGR03532       211 IKQVDEKTKDKTELE  225 (231)
T ss_pred             eccCChhHhHHHHHH
Confidence            999987766666654

Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.

>PRK13627 carnitine operon protein CaiE; Provisional

Probab=99.82  E-value=2.5e-19  Score=141.68  Aligned_cols=59  Identities=20%  Similarity=0.164  Sum_probs=53.3

Q ss_pred             ceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccC--CCCCeEEccCchhhHHHHHHh
Q 025890          176 SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDI--TEPGDYGGFPAVPIHEWRRQV  234 (246)
Q Consensus       176 ~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~--~~~~~~~g~p~~~~~~~~~~~  234 (246)
                      ++.|+++|+||.++++.+++.|++++.|+++|+|+++.  |+++++.|+||+.++.+.+..
T Consensus        88 g~vIG~~v~IG~ga~V~~g~~IG~~s~Vgags~V~~~~~ip~~~~~~G~Pa~~~~~~~~~~  148 (196)
T PRK13627         88 GCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEKRQLLMGTPARAVRSVSDDE  148 (196)
T ss_pred             eEEECCCCEECcCCccCCCcEECCCCEEcCCCEEeCCcCcCCCcEEEecCCEEeccCCHHH
Confidence            47899999999999999999999999999999999976  889999999999988775543

>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA

Probab=99.82  E-value=6.9e-19  Score=132.45  Aligned_cols=65  Identities=11%  Similarity=0.161  Sum_probs=54.2

Q ss_pred             cCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCC-CeEEccCc
Q 025890          157 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEP-GDYGGFPA  224 (246)
Q Consensus       157 ~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~-~~~~g~p~  224 (246)
                      +++.|+++++++.++.+..+++|++++.|+++++|.++++|+++   +++++|+||+|++ ..++|+|.
T Consensus        74 ~~v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~~~I~~~---~~~~~v~~~~~~~~~~~~g~~~  139 (139)
T cd03350          74 TPVIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQSTPIYDR---ETGEIYYGRVPPGSVVVAGSLP  139 (139)
T ss_pred             CCeEECCCCEECCCCEECCCCEECCCCEEcCCCEEcCCeEeccc---CcccEEecccCCCCEEecccCC
Confidence            44556666666666666777889999999999999999999998   9999999999999 57889983

It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.

>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

Probab=99.82  E-value=1.6e-18  Score=137.62  Aligned_cols=151  Identities=26%  Similarity=0.421  Sum_probs=113.6

Q ss_pred             EECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceE
Q 025890           41 IVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNAR  120 (246)
Q Consensus        41 ~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  120 (246)
                      ++.++++|++++.|.+++.|.+++.|+++|.|++++.|.++.|+++|.|++++.|.                     ++.
T Consensus        11 ~~~~~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~---------------------~~~   69 (193)
T cd03353          11 YIDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIE---------------------GAV   69 (193)
T ss_pred             EEcCCeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEE---------------------eeE
Confidence            33444455555555555555556666666667777777667888999999999886                     789


Q ss_pred             ECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEEC-------C
Q 025890          121 IGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVR-------D  193 (246)
Q Consensus       121 Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~-------~  193 (246)
                      +++++.+++++.+..    ++.+++++.++.++.+ +++.|++++.+...+.+ .++.||++|.||+++++.       .
T Consensus        70 ig~~~~Ig~~~~I~~----~~~Ig~~~~Ig~~~~i-~~s~ig~~~~i~~~~~i-~~~~Ig~~~~ig~~~~~~~~~~~~~~  143 (193)
T cd03353          70 IGNGATVGPFAHLRP----GTVLGEGVHIGNFVEI-KKSTIGEGSKANHLSYL-GDAEIGEGVNIGAGTITCNYDGVNKH  143 (193)
T ss_pred             ECCCCEECCccEEcC----ccEECCCCEECCcEEE-ecceEcCCCEeccccee-cccEECCCCEEcCceEEeccCCcccc
Confidence            999999999998874    4788999999988888 57888999988877777 468999999999988774       3


Q ss_pred             CcEECCCCEEccCcEEecc--CCCCCe
Q 025890          194 HVSIASKVRLAANSCVFKD--ITEPGD  218 (246)
Q Consensus       194 ~~~ig~~~~v~~~s~v~~~--~~~~~~  218 (246)
                      .+.|++++++++++.+...  +.+++.
T Consensus       144 ~~vigd~~~ig~~~~i~~~~~Ig~~~~  170 (193)
T cd03353         144 RTVIGDNVFIGSNSQLVAPVTIGDGAT  170 (193)
T ss_pred             CCEECCCeEEccCCEEeCCcEECCCcE
Confidence            6788888888888877642  344443

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.

>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

Probab=99.81  E-value=2.7e-19  Score=159.65  Aligned_cols=147  Identities=22%  Similarity=0.350  Sum_probs=127.8

Q ss_pred             CcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccc
Q 025890           39 GAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLN  118 (246)
Q Consensus        39 ~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  118 (246)
                      .+.+++++.|++++.|++++.|.+++.||+++.|+++|.|.++.|+++|.|++++.+.                     +
T Consensus       255 ~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~---------------------~  313 (451)
T TIGR01173       255 RFDIRGTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLE---------------------G  313 (451)
T ss_pred             eEEECCccEECCCCEEcCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEe---------------------c
Confidence            3456777778888888888888888889999999999999999999999999999996                     8


Q ss_pred             eEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECC-----
Q 025890          119 ARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRD-----  193 (246)
Q Consensus       119 ~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~-----  193 (246)
                      +.||+++.|++++.|..    .+.+++++.++.++.+ +++.||+++.+...+.+. ++.||++|+||.++++..     
T Consensus       314 ~~ig~~~~Ig~~~~i~~----~~~i~~~~~Ig~~~~i-~~~~ig~~~~i~~~~~i~-~~~Ig~~~~ig~~~~~~~~~~~~  387 (451)
T TIGR01173       314 SEIGEGCDVGPFARLRP----GSVLGAGVHIGNFVET-KNARIGKGSKAGHLSYLG-DAEIGSNVNIGAGTITCNYDGAN  387 (451)
T ss_pred             ccccCCcEECCeeEECC----CCEECCCcEEccceee-cCcEECCCcEecceeeEe-eeEEcCCcEECCCeEEeCccccc
Confidence            89999999999999984    4789999999999998 589999999998888884 699999999999998864     


Q ss_pred             --CcEECCCCEEccCcEEecc
Q 025890          194 --HVSIASKVRLAANSCVFKD  212 (246)
Q Consensus       194 --~~~ig~~~~v~~~s~v~~~  212 (246)
                        ++.|+++++|++++.+...
T Consensus       388 ~~~~~Igd~~~ig~~~~i~~~  408 (451)
T TIGR01173       388 KHKTIIGDGVFIGSNTQLVAP  408 (451)
T ss_pred             CCCCEECCCcEECCCCEEECC
Confidence              5889999999999887643

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.

>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.81  E-value=2.7e-18  Score=153.06  Aligned_cols=151  Identities=19%  Similarity=0.312  Sum_probs=117.7

Q ss_pred             eccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEe-ccEECCCcEECCCeEECCCCcee
Q 025890           24 FHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCIGQDGFGF  102 (246)
Q Consensus        24 i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~-~~~Ig~~~~I~~~~~i~~~~~~~  102 (246)
                      +++++.|++++.|+++++|++++.|+++++|++++.| .+++||++|.|++++.|. ++.||++|.|++++.+.      
T Consensus       265 ~~~~~~I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i-~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~------  337 (446)
T PRK14353        265 FSYDTVIGRDVVIEPNVVFGPGVTVASGAVIHAFSHL-EGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVK------  337 (446)
T ss_pred             ECCceEECCCCEECCCCEECCCCEECCCCEECCCeEE-eccEECCCcEECCCeEEeccceecCCeEEcCceEEe------
Confidence            3444555555555555566655666666666665555 368889999999999885 78999999999999885      


Q ss_pred             EEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEE-------ccCcEECCCcEEccceeEec
Q 025890          103 FVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQI-------GHNVAIGKSCMLCGQVGIAG  175 (246)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i-------~~~~~Ig~~~~i~~~~~~~~  175 (246)
                                     ++.|++++.++..+.+.     ++.||+++.++.++.+       .+++.||++++++.++.+..
T Consensus       338 ---------------~~~i~~~~~i~~~~~i~-----~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~  397 (446)
T PRK14353        338 ---------------NAKLGEGAKVNHLTYIG-----DATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVA  397 (446)
T ss_pred             ---------------ceEECCCCEECCeeEEc-----CcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeC
Confidence                           78889998888887775     4688888888888766       45799999999999999999


Q ss_pred             ceEECCCeEECcCcEECCCcEECCCCEE
Q 025890          176 SATIGDYVTLGGRVAVRDHVSIASKVRL  203 (246)
Q Consensus       176 ~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v  203 (246)
                      +++||++++||++++|.+++.  +++++
T Consensus       398 ~~~Ig~~~~ig~~s~v~~~v~--~~~~~  423 (446)
T PRK14353        398 PVTIGDGAYIASGSVITEDVP--DDALA  423 (446)
T ss_pred             CCEECCCCEECCCCEECccCC--CCCEE
Confidence            999999999999999998744  44444

>PLN02296 carbonate dehydratase

Probab=99.80  E-value=9.3e-19  Score=144.40  Aligned_cols=56  Identities=21%  Similarity=0.261  Sum_probs=49.2

Q ss_pred             eEECCCeEECcCcEECCCcEECCCCEEccCcEEecc--CCCCCeEEccCchhhHHHHH
Q 025890          177 ATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKD--ITEPGDYGGFPAVPIHEWRR  232 (246)
Q Consensus       177 ~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~--~~~~~~~~g~p~~~~~~~~~  232 (246)
                      ++|+++|+||.++++.+++.|+++++|+++|+|.++  +|+++++.|+||+.++.+..
T Consensus       137 ~~Igd~v~IG~ga~I~~gv~Ig~~a~IgagSvV~~~~~I~~~~~~~G~PA~~ir~~~~  194 (269)
T PLN02296        137 CTVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQNTRIPSGEVWAGNPAKFLRKLTE  194 (269)
T ss_pred             CEECCCcEECCCcEECCCeEECCCCEECCCCEEecCCEeCCCeEEeccCcEEeCCCCH
Confidence            678889999999999999999999999999999987  89999999999988776643

>PRK09527 lacA galactoside O-acetyltransferase; Reviewed

Probab=99.79  E-value=1.5e-18  Score=137.49  Aligned_cols=58  Identities=31%  Similarity=0.358  Sum_probs=55.1

Q ss_pred             ecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhhHHHH
Q 025890          174 AGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWR  231 (246)
Q Consensus       174 ~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~~~  231 (246)
                      ..+++||++||||.+++|.++++||++++|+++|+|++|+|+++++.|+||+.++.+.
T Consensus       129 ~~pi~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~kdvp~~~v~~G~PAk~i~~~~  186 (203)
T PRK09527        129 SFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVTKDIPPNVVAAGVPCRVIREIN  186 (203)
T ss_pred             cCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEcccCCCCcEEEeeCCEEeccCC
Confidence            4579999999999999999999999999999999999999999999999999998875

>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E

Probab=99.79  E-value=3.4e-18  Score=131.06  Aligned_cols=56  Identities=27%  Similarity=0.231  Sum_probs=48.9

Q ss_pred             eEECCCeEECcCcEECCCcEECCCCEEccCcEEec--cCCCCCeEEccCchhhHHHHH
Q 025890          177 ATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFK--DITEPGDYGGFPAVPIHEWRR  232 (246)
Q Consensus       177 ~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~--~~~~~~~~~g~p~~~~~~~~~  232 (246)
                      +.||++|+|+.++++.+++.|+++++|++++++.+  ++|+++++.|+|++.++.+.+
T Consensus        79 ~~Ig~~~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~~~i~~~~~v~G~Pa~~~~~~~~  136 (155)
T cd04745          79 CTIGRNALVGMNAVVMDGAVIGEESIVGAMAFVKAGTVIPPRSLIAGSPAKVIRELSD  136 (155)
T ss_pred             CEECCCCEECCCCEEeCCCEECCCCEECCCCEeCCCCEeCCCCEEecCCceEeccCCH
Confidence            67888888888888888889999999999998887  789999999999999887654

coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.

>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

Probab=99.78  E-value=1e-18  Score=148.19  Aligned_cols=176  Identities=20%  Similarity=0.347  Sum_probs=146.5

Q ss_pred             cEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccce
Q 025890           40 AIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNA  119 (246)
Q Consensus        40 a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  119 (246)
                      .+|.+.+.|+.++.|.++++|.+++.||++|+|+++|.|.++.|++++.|.++++|.                     .+
T Consensus       263 ~~i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie---------------------~s  321 (460)
T COG1207         263 TYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIE---------------------GS  321 (460)
T ss_pred             EEEcCcEEECCceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceee---------------------cc
Confidence            477888889999999999999999999999999999999999999999999999997                     89


Q ss_pred             EECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECC------
Q 025890          120 RIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRD------  193 (246)
Q Consensus       120 ~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~------  193 (246)
                      .+|+++.|||++.+.++    +.+++++.+|..+.+ +++.||+++...+-+++++ +.||++|.||++++...      
T Consensus       322 ~vg~~~~VGPfA~LRPg----~~L~~~~hIGNFVEv-K~a~ig~gsKa~HLtYlGD-A~iG~~~NiGAGtItcNYDG~nK  395 (460)
T COG1207         322 TVGEGATVGPFARLRPG----AVLGADVHIGNFVEV-KKATIGKGSKAGHLTYLGD-AEIGENVNIGAGTITCNYDGKNK  395 (460)
T ss_pred             EecCCcccCCccccCCc----CcccCCCeEeeeEEE-ecccccCCccccceeeecc-ceecCCceeccceEEEcCCCccc
Confidence            99999999999999965    899999999999999 9999999999998888877 89999999999998743      


Q ss_pred             -CcEECCCCEEccCcEEecc--CCCCCe------EE-ccCchhhHHHHHHhhhhhhccc
Q 025890          194 -HVSIASKVRLAANSCVFKD--ITEPGD------YG-GFPAVPIHEWRRQVANQIRSSK  242 (246)
Q Consensus       194 -~~~ig~~~~v~~~s~v~~~--~~~~~~------~~-g~p~~~~~~~~~~~~~~~~~~~  242 (246)
                       -+.||+++.|+++|.+...  +.++++      +. -.|...+.--+.+++++.-+.+
T Consensus       396 ~~T~IGd~vFiGSns~LVAPV~IGd~a~iaAGStIT~DVp~~aLai~RarQ~~~egw~~  454 (460)
T COG1207         396 FKTIIGDNVFIGSNSQLVAPVTIGDGATIAAGSTITKDVPEGALAISRARQTNKEGWVR  454 (460)
T ss_pred             ceeeecCCcEEccCCcEEeeEEecCCcEEcccceEcccCCCCceeEeecceeecccccc
Confidence             2899999999999987643  334443      22 2465555444455555555544

>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.78  E-value=1.2e-17  Score=128.87  Aligned_cols=73  Identities=12%  Similarity=0.216  Sum_probs=49.7

Q ss_pred             eEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCC
Q 025890          141 TVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDIT  214 (246)
Q Consensus       141 ~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~  214 (246)
                      +.||+++.+..++.+.+ +.||++|+++.++.+.++++||++|+||++++|.+++.++++++++++..+.++..
T Consensus        67 v~IG~~~~i~~~~~i~~-~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~~~i~~~~vi~g~~~~~~~~~  139 (164)
T cd04646          67 MIIGSNNVFEVGCKCEA-LKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEILPENTVIYGADCLRRTQT  139 (164)
T ss_pred             eEECCCCEECCCcEEEe-eEECCCCEEeCCCEECCCCEECCCCEEeCCeEECCCcEECCCeEEeCCceEEEecC
Confidence            33444444444444422 66666666666667777788888888888888888888888888888777776443

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.77  E-value=1.6e-17  Score=149.08  Aligned_cols=167  Identities=17%  Similarity=0.298  Sum_probs=112.8

Q ss_pred             ceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCC-----cEECCCCEECCceEE-eccEECCCcEECCCeEE
Q 025890           22 GIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPA-----VTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCI   95 (246)
Q Consensus        22 ~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~-----~~ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i   95 (246)
                      ..+++++.|.+++.|++++.|+++|.| .++.|+++|.|+++     ++|++++.|++++.+ .++.||+++.|++++.|
T Consensus       277 ~~I~~~~~I~~~v~Ig~~~~I~~~~~i-~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i  355 (481)
T PRK14358        277 VTIEPGVLLRGQTRVADGVTIGAYSVV-TDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVET  355 (481)
T ss_pred             CEEeCCcEEeCCcEECCCCEECCCCEE-eeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEE
Confidence            344444444444445555555555444 22344444444433     455566666666666 35777777777777777


Q ss_pred             CCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEc-------cCcEECCCcEEc
Q 025890           96 GQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIG-------HNVAIGKSCMLC  168 (246)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~-------~~~~Ig~~~~i~  168 (246)
                      .                     ++.|++++.++..+.+.     ++.||++|.++.++.+.       +++.||++++++
T Consensus       356 ~---------------------~~~i~~~~~ig~~~~~~-----~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig  409 (481)
T PRK14358        356 K---------------------NARLDAGVKAGHLAYLG-----DVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIG  409 (481)
T ss_pred             C---------------------CceecCCcccCceEEEC-----CeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEc
Confidence            5                     67777777777776664     47888888888887774       468999999999


Q ss_pred             cceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCe
Q 025890          169 GQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGD  218 (246)
Q Consensus       169 ~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~  218 (246)
                      .++.+.++++||++++|++++++.+++.  +++++... .+++++.....
T Consensus       410 ~~~~i~~~~~Ig~~~~i~~gs~v~~~v~--~~~~~~~~-~~~~~~~~~~~  456 (481)
T PRK14358        410 SNTTLIAPRVVGDAAFIAAGSAVHDDVP--EGAMAVAR-GKQRNLEGWSR  456 (481)
T ss_pred             CCCEEcCCcEECCCCEECCCCEEecccC--CCCEEEec-ccceeccchhh
Confidence            9999999999999999999999998754  45544433 36677776654

>PRK10502 putative acyl transferase; Provisional

Probab=99.77  E-value=7.2e-18  Score=132.38  Aligned_cols=58  Identities=33%  Similarity=0.362  Sum_probs=54.3

Q ss_pred             EecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhhHHH
Q 025890          173 IAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEW  230 (246)
Q Consensus       173 ~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~~  230 (246)
                      ...+++|||+|+||.+++|.++++|+++++|+++|++++++|+++++.|+||+.++++
T Consensus       121 ~~~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~vIga~svV~~~v~~~~v~~G~Pa~~ik~r  178 (182)
T PRK10502        121 NTAPIVIGEGCWLAADVFVAPGVTIGSGAVVGARSSVFKSLPANTICRGNPAVPIRPR  178 (182)
T ss_pred             ccCCEEEcCCcEEcCCCEEcCCCEECCCCEECCCCEEecccCCCcEEECCcceEeccc
Confidence            3467999999999999999999999999999999999999999999999999988765

>PLN02472 uncharacterized protein

Probab=99.76  E-value=1.4e-17  Score=135.75  Aligned_cols=102  Identities=14%  Similarity=0.122  Sum_probs=69.7

Q ss_pred             ceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEE
Q 025890          118 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI  197 (246)
Q Consensus       118 ~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~i  197 (246)
                      .+.||+++.|+++|+|......+..+            ..++.||+++.|++++.+. +++|+++|+||.+++|.+++.|
T Consensus        98 ~I~IG~~t~Ig~~~vI~~~~~~~~~i------------~~~tvIG~~v~IG~~s~L~-~~~Igd~v~IG~~svI~~gavI  164 (246)
T PLN02472         98 KITVGFCSNVQERCVLHAAWNSPTGL------------PAETLIDRYVTIGAYSLLR-SCTIEPECIIGQHSILMEGSLV  164 (246)
T ss_pred             ceEECCCCEECCCCEEeecCccccCC------------CCCcEECCCCEECCCcEEC-CeEEcCCCEECCCCEECCCCEE
Confidence            45666666666666665321000111            1223333333333333333 4789999999999999999999


Q ss_pred             CCCCEEccCcEEe--ccCCCCCeEEccCchhhHHHHH
Q 025890          198 ASKVRLAANSCVF--KDITEPGDYGGFPAVPIHEWRR  232 (246)
Q Consensus       198 g~~~~v~~~s~v~--~~~~~~~~~~g~p~~~~~~~~~  232 (246)
                      +++++|++++++.  +++|+++++.|+||+.++.|.+
T Consensus       165 g~~~~Ig~gsvV~~g~~Ip~g~~~~G~PA~~~~~~~~  201 (246)
T PLN02472        165 ETHSILEAGSVLPPGRRIPTGELWAGNPARFVRTLTN  201 (246)
T ss_pred             CCCCEECCCCEECCCCEeCCCCEEEecCCEEeccCCH
Confidence            9999999999998  6799999999999999877754

>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.76  E-value=4.2e-17  Score=145.87  Aligned_cols=158  Identities=22%  Similarity=0.387  Sum_probs=131.0

Q ss_pred             cEEcCCc-EECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeEEcCCCceee
Q 025890           34 VLIEVGA-IVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLK  112 (246)
Q Consensus        34 ~~I~~~a-~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~  112 (246)
                      ..+++.+ .|++++.|++++.|+++|.|+++++||++|.|++++.|.++.||++|.|++++.+.                
T Consensus       256 ~~i~~~~~~i~~~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~----------------  319 (459)
T PRK14355        256 TLIDPETTYIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLE----------------  319 (459)
T ss_pred             EEECCCceEECCCeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEe----------------
Confidence            3566654 68888888899999999999999999999999999999999999999999999996                


Q ss_pred             cCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEEC
Q 025890          113 KPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVR  192 (246)
Q Consensus       113 ~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~  192 (246)
                           +++|++++.|++++++..    ++.+++++.++.++.+ +++.||+++.+...+.+ +++.||++|.||.++++.
T Consensus       320 -----~~~i~~~~~ig~~~~i~~----~~~i~~~~~ig~~~~~-~~~~ig~~~~~~~~~~i-g~~~ig~~~~ig~~~~~~  388 (459)
T PRK14355        320 -----DSVVGDDVAIGPMAHLRP----GTELSAHVKIGNFVET-KKIVMGEGSKASHLTYL-GDATIGRNVNIGCGTITC  388 (459)
T ss_pred             -----CCEECCCCEECCCCEECC----CCEeCCCCEECCCccc-cCCEECCCceeeeeccc-cCCEECCCCEEccceeec
Confidence                 889999999999999985    4889999999998877 68888888888777666 468999999999987663


Q ss_pred             -------CCcEECCCCEEccCcEEecc--CCCCCe
Q 025890          193 -------DHVSIASKVRLAANSCVFKD--ITEPGD  218 (246)
Q Consensus       193 -------~~~~ig~~~~v~~~s~v~~~--~~~~~~  218 (246)
                             .++.||+++.+++++.+...  +.+++.
T Consensus       389 ~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~  423 (459)
T PRK14355        389 NYDGVKKHRTVIEDDVFVGSDVQFVAPVTVGRNSL  423 (459)
T ss_pred             CcCCccccCcEecCCeEEcCCCEEeCCcEECCCCE
Confidence                   35778888888888877643  344443

>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.76  E-value=4.4e-17  Score=146.55  Aligned_cols=164  Identities=21%  Similarity=0.352  Sum_probs=107.7

Q ss_pred             ceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEE----CCceEE-eccEECCCcEECCCeEEC
Q 025890           22 GIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNI----GFNVAL-SNCIIGDSCIIHNGVCIG   96 (246)
Q Consensus        22 ~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I----~~~~~I-~~~~Ig~~~~I~~~~~i~   96 (246)
                      ..+++++.|++++.|++++.|.++++|+++++|+++|.|. +++|++++.|    -++++| .++.||+++.+.+++.|+
T Consensus       266 ~~i~~~v~ig~~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~-~~~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~~~vIg  344 (482)
T PRK14352        266 TWIDVDVTIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTLT-DVTVGEGASVVRTHGSESEIGAGATVGPFTYLRPGTVLG  344 (482)
T ss_pred             EEEeCCEEECCCcEEeCCcEEeecCEECCCCEECCCCEEe-cCEECCCCEEeeeeeecCEEcCCCEECCCeEecCCcEEc
Confidence            4567777777777777777777777777777777777764 4555555444    224444 344444444444444444


Q ss_pred             CCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEc-------cCcEECCCcEEcc
Q 025890           97 QDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIG-------HNVAIGKSCMLCG  169 (246)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~-------~~~~Ig~~~~i~~  169 (246)
                      .+....      .+   .....+.|++++.++..+.+.     ++.||+++.++.++.+.       .++.||++++++.
T Consensus       345 ~~~~ig------~~---~~~~~~~I~~~~~i~~~~~i~-----~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~  410 (482)
T PRK14352        345 EEGKLG------AF---VETKNATIGRGTKVPHLTYVG-----DADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGS  410 (482)
T ss_pred             CCCEEC------Cc---EEEcccEECCCcEEccCceec-----ccEECCCcEECCCcEEeccccccCCCCeECCCcEECC
Confidence            311000      00   000156666666666665553     57888888888887764       4589999999999


Q ss_pred             ceeEecceEECCCeEECcCcEECCCcEECCCCE
Q 025890          170 QVGIAGSATIGDYVTLGGRVAVRDHVSIASKVR  202 (246)
Q Consensus       170 ~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~  202 (246)
                      ++.+.++++||++++|++++++.+++  .++++
T Consensus       411 ~~~i~~~~~Ig~~~~igags~v~~~v--~~~~~  441 (482)
T PRK14352        411 DTMFVAPVTVGDGAYTGAGTVIREDV--PPGAL  441 (482)
T ss_pred             CCEEeCCCEECCCcEECCCCEEcCCC--CCCcE
Confidence            99999999999999999999999885  45553

>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]

Probab=99.76  E-value=2.2e-17  Score=125.52  Aligned_cols=75  Identities=20%  Similarity=0.299  Sum_probs=57.8

Q ss_pred             CeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEE-ccCcEEeccCCC
Q 025890          140 DTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL-AANSCVFKDITE  215 (246)
Q Consensus       140 ~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v-~~~s~v~~~~~~  215 (246)
                      ++.||+++.++.++.+ |+|+|+++|+|+.++.+.++++||++|.||++++|.++.+++++..+ +..+.+.+.+.+
T Consensus        72 p~~IG~~vtIGH~aiv-HGc~Ig~~~lIGmgA~vldga~IG~~~iVgAgalV~~~k~~p~~~L~~G~Pak~~r~l~~  147 (176)
T COG0663          72 PVTIGDDVTIGHGAVV-HGCTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIPGGSLVVGSPAKVVRPLDD  147 (176)
T ss_pred             CeEECCCcEEcCccEE-EEeEECCCcEEecCceEeCCcEECCCcEEccCCcccCCcCCCCCeEeecCcceeeecCCh
Confidence            3444444444444455 66888999999999999999999999999999999999999998844 666666666654

>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.76  E-value=1.7e-17  Score=128.18  Aligned_cols=129  Identities=16%  Similarity=0.139  Sum_probs=95.1

Q ss_pred             ECCCCEECCceEE-eccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEEC
Q 025890           66 IGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIG  144 (246)
Q Consensus        66 ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig  144 (246)
                      |++++.|.+.+.| .++.||++|.|++++.|..+.                 ..+.||+++.|+++++|........   
T Consensus         2 ~~~~~~I~~~a~i~g~v~IG~~~~I~~~a~I~~~~-----------------~~i~IG~~~~I~~~~~I~~~~~~~~---   61 (164)
T cd04646           2 IAPGAVVCQESEIRGDVTIGPGTVVHPRATIIAEA-----------------GPIIIGENNIIEEQVTIVNKKPKDP---   61 (164)
T ss_pred             cCCCcEECCCCEEcCceEECCCCEEcCCeEEecCC-----------------CCeEECCCCEECCCcEEecCCCCCC---
Confidence            3455555555555 578888888888888885321                 1678888888888887764311000   


Q ss_pred             CCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEecc--CCCCCeEEcc
Q 025890          145 DHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKD--ITEPGDYGGF  222 (246)
Q Consensus       145 ~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~--~~~~~~~~g~  222 (246)
                               ..+.++.||+++.+..++.+.. ++|||+|+||.++.+.+++.|+++++|++++++.++  +|+++++.|+
T Consensus        62 ---------~~~~~v~IG~~~~i~~~~~i~~-~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~~~i~~~~vi~g~  131 (164)
T cd04646          62 ---------AEPKPMIIGSNNVFEVGCKCEA-LKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEILPENTVIYGA  131 (164)
T ss_pred             ---------CCCCCeEECCCCEECCCcEEEe-eEECCCCEEeCCCEECCCCEECCCCEEeCCeEECCCcEECCCeEEeCC
Confidence                     1223455555555555555555 999999999999999999999999999999999998  9999999998


Q ss_pred             Cc
Q 025890          223 PA  224 (246)
Q Consensus       223 p~  224 (246)
                      |+
T Consensus       132 ~~  133 (164)
T cd04646         132 DC  133 (164)
T ss_pred             ce
Confidence            75

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site

Probab=99.75  E-value=1.6e-16  Score=123.16  Aligned_cols=76  Identities=18%  Similarity=0.250  Sum_probs=56.9

Q ss_pred             eEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCe
Q 025890          141 TVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGD  218 (246)
Q Consensus       141 ~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~  218 (246)
                      +.+|+++.++.++.+..++.||++|+++.++.+. +++||++|+|+.++.+. ++.|++++.+++++++.++.++..+
T Consensus        65 v~Ig~~~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~-~~~Ig~~~~Ig~~s~i~-~~~i~~~~~v~~~~~v~~~~~~~~~  140 (167)
T cd00710          65 VWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVF-NAKVGDNCVIGHNAVVD-GVEIPPGRYVPAGAVITSQTQADAL  140 (167)
T ss_pred             EEECCCceECCCCEEeCCEEECCCCEECCCCEEE-CCEECCCCEEcCCCEEe-CCEeCCCCEECCCCEEcCCCccccc
Confidence            4455555555555555666777777777776665 58999999999999994 6899999999999999888776443

They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.

>TIGR02287 PaaY phenylacetic acid degradation protein PaaY

Probab=99.75  E-value=2.2e-17  Score=130.15  Aligned_cols=130  Identities=16%  Similarity=0.198  Sum_probs=93.7

Q ss_pred             ECCCCEECCceEE-eccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEEC
Q 025890           66 IGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIG  144 (246)
Q Consensus        66 ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig  144 (246)
                      |++++.|.+.+.| .++.||++|.|+++|.|..+                 .+.++||+++.|+++|+|....       
T Consensus        11 i~~~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd-----------------~g~i~Ig~~t~Ig~~~~I~~~~-------   66 (192)
T TIGR02287        11 VHPEAYVHPTAVLIGDVILGKRCYVGPLASLRGD-----------------FGRIVLKEGANIQDNCVMHGFP-------   66 (192)
T ss_pred             CCCCcEECCCCEEEeeEEECCCCEECCCcEEEcc-----------------CCceEECCCCEECCCeEEeccC-------
Confidence            4555666666655 67889999999999888632                 1267888888888888775321       


Q ss_pred             CCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEec--cCCCCCeEEcc
Q 025890          145 DHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFK--DITEPGDYGGF  222 (246)
Q Consensus       145 ~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~--~~~~~~~~~g~  222 (246)
                                 ..++.|++++.|++++.+. ++.|+++|+||.++++.+++.|++++.|++++++.+  ++|+++++.|+
T Consensus        67 -----------~~~siIg~~~~Ig~~a~I~-~siIg~~~~IG~ga~I~~g~~IG~~s~Vgags~V~~~~~ip~~~l~~G~  134 (192)
T TIGR02287        67 -----------GQDTVVEENGHVGHGAILH-GCIVGRNALVGMNAVVMDGAVIGENSIVAASAFVKAGAEMPAQYLVVGS  134 (192)
T ss_pred             -----------CCCCeECCCCEECCCCEEc-CCEECCCCEECCCcccCCCeEECCCCEEcCCCEECCCCEECCCeEEEcc
Confidence                       1233333333333333333 378888888888888888899999999999998887  67899999999


Q ss_pred             CchhhHHHH
Q 025890          223 PAVPIHEWR  231 (246)
Q Consensus       223 p~~~~~~~~  231 (246)
                      |+|.++.+.
T Consensus       135 Pak~i~~~~  143 (192)
T TIGR02287       135 PAKVIRELS  143 (192)
T ss_pred             CCEEeccCC
Confidence            999887653

Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.

>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.75  E-value=7.6e-17  Score=144.14  Aligned_cols=154  Identities=21%  Similarity=0.299  Sum_probs=101.5

Q ss_pred             CceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCc-----EECCCCEECCceEE-eccEECCCcEECCCeE
Q 025890           21 GGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAV-----TIGQSTNIGFNVAL-SNCIIGDSCIIHNGVC   94 (246)
Q Consensus        21 ~~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~-----~ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~   94 (246)
                      +..+++++.|.+++.|++++.|++++.|. ++.|+++|.|++++     +|++++.|++++.| .++.+++++.|++++.
T Consensus       271 ~~~I~~~~~i~~~v~ig~~~~I~~~~~i~-~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~  349 (456)
T PRK09451        271 DVEIDTNVIIEGNVTLGNRVKIGAGCVLK-NCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVE  349 (456)
T ss_pred             CCEEcCCeEEecCcEECCCCEECCCceEe-cCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceecccee
Confidence            34455555555555555555555555542 34445555554444     34455666666655 3566666666666666


Q ss_pred             ECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEc-------cCcEECCCcEE
Q 025890           95 IGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIG-------HNVAIGKSCML  167 (246)
Q Consensus        95 i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~-------~~~~Ig~~~~i  167 (246)
                      |.                     .+.|++++.++..+.+.     ++.||+++.++.++.+.       ..+.||+++++
T Consensus       350 i~---------------------~~~i~~~~~~~~~~~~g-----~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~i  403 (456)
T PRK09451        350 MK---------------------KARLGKGSKAGHLTYLG-----DAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFV  403 (456)
T ss_pred             ee---------------------ceeeCCCCccCcccccc-----ccEECCCCEEcCCeEEecccCcccCCCEECCCcEE
Confidence            54                     67777777777665553     47888888888877663       25789999999


Q ss_pred             ccceeEecceEECCCeEECcCcEECCCcEECCCCEE
Q 025890          168 CGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL  203 (246)
Q Consensus       168 ~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v  203 (246)
                      +.++.+..+++|+++++|+++++|.+++  ++++++
T Consensus       404 g~~~~i~~~~~ig~~~~i~~gs~v~~~v--~~~~~~  437 (456)
T PRK09451        404 GSDTQLVAPVTVGKGATIGAGTTVTRDV--AENELV  437 (456)
T ss_pred             CCCCEEeCCcEECCCCEECCCCEEcccc--CCCCEE
Confidence            9999999999999999999999998874  455544

>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.74  E-value=6.1e-17  Score=144.46  Aligned_cols=167  Identities=13%  Similarity=0.191  Sum_probs=102.6

Q ss_pred             ceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECC----ceEE-eccEECCCcEECCCeEEC
Q 025890           22 GIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGF----NVAL-SNCIIGDSCIIHNGVCIG   96 (246)
Q Consensus        22 ~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~----~~~I-~~~~Ig~~~~I~~~~~i~   96 (246)
                      +.+++++.|++++.|++++.|++++.||+++.|+++|.|. +++|+++|.|..    +++| .++.|++++.|..++.|+
T Consensus       250 ~~i~~~~~Ig~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~-~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig  328 (448)
T PRK14357        250 TYIHYDVEIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRIV-DCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLK  328 (448)
T ss_pred             EEEccceEECCCcEEcCCcEEEeeeEECCCcEECCCceec-ccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCccccc
Confidence            4677777777777777777777777777777777777664 355555555432    3333 333333333333333333


Q ss_pred             CCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEc-------cCcEECCCcEEcc
Q 025890           97 QDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIG-------HNVAIGKSCMLCG  169 (246)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~-------~~~~Ig~~~~i~~  169 (246)
                      .....    ++     .....++.||+++.+...+.+.     ++.||+++.++.++.+.       +.+.||+++++++
T Consensus       329 ~~~~I----g~-----~~~i~~~~ig~~~~~~~~~~~~-----~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~  394 (448)
T PRK14357        329 KSVKI----GN-----FVEIKKSTIGENTKAQHLTYLG-----DATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGS  394 (448)
T ss_pred             CCcEe----cC-----ceeeeccEEcCCcCcccccccc-----CcEECCCcEECCCcccccccccccCCcEECCCCEECC
Confidence            20000    00     0000144555555555544443     46777888887776653       4688899999999


Q ss_pred             ceeEecceEECCCeEECcCcEECCCcEECCCCEEcc
Q 025890          170 QVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA  205 (246)
Q Consensus       170 ~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~  205 (246)
                      ++.+..+++||++++|+++++|.++  +.+++++..
T Consensus       395 ~~~i~~gv~Ig~~~~i~ag~~v~~~--v~~~~~~~g  428 (448)
T PRK14357        395 NSSLVAPVRIGKGALIGAGSVITED--VPPYSLALG  428 (448)
T ss_pred             CCEEeCCcEECCCCEEcCCCEECCc--CCCCcEEEc
Confidence            9988888999999999999999887  445555544

>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.74  E-value=5.9e-17  Score=132.01  Aligned_cols=66  Identities=11%  Similarity=0.200  Sum_probs=54.5

Q ss_pred             cCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEE-c-cCch
Q 025890          157 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYG-G-FPAV  225 (246)
Q Consensus       157 ~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~-g-~p~~  225 (246)
                      +++.||++|+|+.++.+.++++|+++|.||++++|.++++|.+..   +++++.+++|+++.+. | .|.+
T Consensus       172 ~~ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI~~~~~I~~~~---~g~v~~~~vp~~svv~~g~~p~~  239 (269)
T TIGR00965       172 NPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQSTKIYDRE---TGEIHYGRVPAGSVVVSGNLPSK  239 (269)
T ss_pred             CCeEECCCCEECCCCEEcCCCEECCCCEEeCCCEECCCCEEeccc---CCceeeeecCCCcEEecCCeecC
Confidence            667777777777777778888999999999999999999999977   8888899999999775 4 6743

The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).

>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.74  E-value=1.1e-16  Score=141.98  Aligned_cols=146  Identities=20%  Similarity=0.231  Sum_probs=100.2

Q ss_pred             ceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECC----CcEECCCCEECCceEEeccEECCCcEECCCeEECC
Q 025890           22 GIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGP----AVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQ   97 (246)
Q Consensus        22 ~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~----~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~   97 (246)
                      ..+++++.+.+++.|++++.|++++.|+ ++.|+++|.|++    +++|++++.|++++.|.      ++.|++++.++ 
T Consensus       254 ~~~~~~~~i~g~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~------~~~ig~~~~i~-  325 (430)
T PRK14359        254 IYIESGVEFEGECELEEGVRILGKSKIE-NSHIKAHSVIEESIIENSDVGPLAHIRPKSEIK------NTHIGNFVETK-  325 (430)
T ss_pred             eEECCCcEEcCceEECCCCEECCCeEEE-eeEECCCCEEeccEEeCCEECCCCEECCCcEEe------ccEEcCcEEEc-
Confidence            3456677777777778888888777776 777788887765    33444444444444444      45555555554 


Q ss_pred             CCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEc-------cCcEECCCcEEccc
Q 025890           98 DGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIG-------HNVAIGKSCMLCGQ  170 (246)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~-------~~~~Ig~~~~i~~~  170 (246)
                                          ++++ +++.+++.+.+.     ++.||+++.++.++.+.       ..+.||++++++.+
T Consensus       326 --------------------~~~~-~~~~i~~~~~i~-----d~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~  379 (430)
T PRK14359        326 --------------------NAKL-NGVKAGHLSYLG-----DCEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSD  379 (430)
T ss_pred             --------------------ccEe-cccccccccccc-----CCEECCCCEECCCceEccccCccCcCCEECCCeEEcCC
Confidence                                3333 455555555553     35666666666666553       35899999999999


Q ss_pred             eeEecceEECCCeEECcCcEECCCcEECCCCEE
Q 025890          171 VGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL  203 (246)
Q Consensus       171 ~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v  203 (246)
                      +.+..+++||++++|+++++|.+++  .+++.+
T Consensus       380 ~~i~~~~~ig~~~~i~~g~~v~~~v--~~~~~~  410 (430)
T PRK14359        380 TQLVAPVNIEDNVLIAAGSTVTKDV--PKGSLA  410 (430)
T ss_pred             CEEeCCcEECCCCEECCCCEEcccc--CCCcEE
Confidence            9999999999999999999999884  455544

>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.73  E-value=1.7e-16  Score=141.85  Aligned_cols=182  Identities=14%  Similarity=0.203  Sum_probs=136.5

Q ss_pred             EEeechhhhhhhcccCCCceeccCcEECCCcEEc--CCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEecc
Q 025890            4 YVSDIESRQQFQKWHNGGGIFHQSACIDSTVLIE--VGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNC   81 (246)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~I~--~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~   81 (246)
                      +|.++.+++.+.+.......--....+.+++.|.  +++++++++.|++++.|..+|.|++++.||++|.|+++|.|.++
T Consensus       226 ~~~~I~tp~dl~~a~~~l~~~~~~~~~~~~~~i~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~  305 (456)
T PRK14356        226 NLLGVNTPAELVRSEELLRARIVEKHLESGVLIHAPESVRIGPRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRDA  305 (456)
T ss_pred             eEecCcCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEECCCcEECCCCEEeCCcEEeCceEECCCCEECCCeEEEee
Confidence            4567777776654433111000011222333332  34566666777777777777888888899999999999999999


Q ss_pred             EECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEE
Q 025890           82 IIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAI  161 (246)
Q Consensus        82 ~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~I  161 (246)
                      +|+++|.|++++.|.                     +++||+++.|+++++|.+    ++.+++++.+++++.+ .++.|
T Consensus       306 ~i~~~~~I~~~~~i~---------------------~~~ig~~~~Ig~~~~i~~----~~~ig~~~~ig~~~~i-~~~~i  359 (456)
T PRK14356        306 VVSSGATIHSFSHLE---------------------GAEVGDGCSVGPYARLRP----GAVLEEGARVGNFVEM-KKAVL  359 (456)
T ss_pred             EECCCCEEeeeEEEc---------------------ccceecccEECCceEECC----CCEECCCCEecCCcee-eeeEe
Confidence            999999999999996                     899999999999999984    4789999999999888 66889


Q ss_pred             CCCcEEccceeEecceEECCCeEECcCcEEC-------CCcEECCCCEEccCcEEecc
Q 025890          162 GKSCMLCGQVGIAGSATIGDYVTLGGRVAVR-------DHVSIASKVRLAANSCVFKD  212 (246)
Q Consensus       162 g~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~-------~~~~ig~~~~v~~~s~v~~~  212 (246)
                      ++++.+.+...+. ++.||+++.|+.++++.       .++.|++++.+++++.+...
T Consensus       360 ~~~~~i~~~~~ig-~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~i~~~  416 (456)
T PRK14356        360 GKGAKANHLTYLG-DAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAP  416 (456)
T ss_pred             cCCcEeccccccc-CeEECCCCEECCCceeeccccccCCCCEECCCcEEcCCCEEeCC
Confidence            9998888887765 58999999999987652       35788888888888877653

>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.73  E-value=2e-16  Score=141.48  Aligned_cols=151  Identities=24%  Similarity=0.432  Sum_probs=126.2

Q ss_pred             cEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccce
Q 025890           40 AIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNA  119 (246)
Q Consensus        40 a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  119 (246)
                      +.|++++.|++++.|++++.|.+++.||++|.|++++.|.++.|+++|.|++ +.+.                     ++
T Consensus       260 ~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~-~~i~---------------------~~  317 (458)
T PRK14354        260 TYIDADVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITN-SVIE---------------------ES  317 (458)
T ss_pred             EEECCCcEECCCCEEeCCeEEecceEECCCCEECCCcEEeccEECCCCEEEE-EEEe---------------------CC
Confidence            4677777888888888888888888999999999999999999999999985 4443                     78


Q ss_pred             EECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECC------
Q 025890          120 RIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRD------  193 (246)
Q Consensus       120 ~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~------  193 (246)
                      .||+++.|++++.|..    ++.||+++.++.++.+ +++.|++++.+...+.+ ++++||++|.|+.++.+..      
T Consensus       318 ~ig~~~~Ig~~~~i~~----~~~Ig~~~~i~~~~~i-~~~~i~~~~~i~~~~~~-~~~~ig~~~~ig~~~~~~~~~~~~~  391 (458)
T PRK14354        318 KVGDNVTVGPFAHLRP----GSVIGEEVKIGNFVEI-KKSTIGEGTKVSHLTYI-GDAEVGENVNIGCGTITVNYDGKNK  391 (458)
T ss_pred             EECCCcEECCceEecC----CCEEeCCcEECCceEE-eeeEECCCCEecceeee-cCcccCCceEEcCceeecccccccc
Confidence            9999999999999984    4889999999999998 57889999998888776 5589999999999988753      


Q ss_pred             -CcEECCCCEEccCcEEecc--CCCCCe
Q 025890          194 -HVSIASKVRLAANSCVFKD--ITEPGD  218 (246)
Q Consensus       194 -~~~ig~~~~v~~~s~v~~~--~~~~~~  218 (246)
                       ++.|++++++++++.+...  +.++++
T Consensus       392 ~~~~igd~~~ig~~s~i~~~~~ig~~~~  419 (458)
T PRK14354        392 FKTIIGDNAFIGCNSNLVAPVTVGDNAY  419 (458)
T ss_pred             cCCEECCCcEEccCCEEeCCcEECCCCE
Confidence             6889999999999988754  344443

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=99.73  E-value=1.6e-16  Score=126.49  Aligned_cols=103  Identities=30%  Similarity=0.435  Sum_probs=91.0

Q ss_pred             ceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEE
Q 025890          118 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI  197 (246)
Q Consensus       118 ~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~i  197 (246)
                      ++.||+++.|+++++|..    ++.|++++.++.++.+++++.|+++++++.++.+.++++|+++|+|+.++.+.+++.|
T Consensus        99 ~~~ig~~~~i~~~~~i~~----~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~i  174 (201)
T TIGR03570        99 SASIGEGTVIMAGAVINP----DVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGAGATIIQGVTI  174 (201)
T ss_pred             CCEECCCCEECCCCEECC----CCEECCCcEECCCCEEcCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEEeCCCEE
Confidence            556666666666666663    4778888888888888888999999999999999999999999999999999999999


Q ss_pred             CCCCEEccCcEEeccCCCCCeEEccCc
Q 025890          198 ASKVRLAANSCVFKDITEPGDYGGFPA  224 (246)
Q Consensus       198 g~~~~v~~~s~v~~~~~~~~~~~g~p~  224 (246)
                      +++++|++++++.+++|+++++.|+||
T Consensus       175 ~~~~~i~~~~~v~~~~~~~~~~~g~pa  201 (201)
T TIGR03570       175 GAGAIVGAGAVVTKDIPDGGVVVGVPA  201 (201)
T ss_pred             CCCCEECCCCEECCcCCCCCEEEeccC
Confidence            999999999999999999999999997

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.73  E-value=2.3e-16  Score=140.87  Aligned_cols=112  Identities=22%  Similarity=0.343  Sum_probs=78.1

Q ss_pred             cEECCCCEECCceEEe-ccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeE
Q 025890           64 VTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTV  142 (246)
Q Consensus        64 ~~ig~~~~I~~~~~I~-~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~  142 (246)
                      ++|++++.|++++.|. ++.|+++|.|++++.+.                     ++.|++++.+..++.+.     ++.
T Consensus       314 ~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~---------------------~~~i~~~~~i~~~~~~~-----~~~  367 (450)
T PRK14360        314 SQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIK---------------------KSQLGEGSKVNHLSYIG-----DAT  367 (450)
T ss_pred             ccccCCcEECCCCEECCCCEEeCceEECCCEEEe---------------------ccccCCCcEeccceecC-----Cce
Confidence            4456666666666663 56777777777777664                     56677777776665543     466


Q ss_pred             ECCCCEECCCCEEc-------cCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEE
Q 025890          143 IGDHSKIDNLVQIG-------HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL  203 (246)
Q Consensus       143 ig~~~~v~~~~~i~-------~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v  203 (246)
                      |+++|.++.++.+.       ..++||++++++.++.+..+++||+++.|+++++|.++  |++++++
T Consensus       368 i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i~~~~~ig~~~~v~~~~~v~~~--~~~~~~~  433 (450)
T PRK14360        368 LGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVAPITLGEDVTVAAGSTITKD--VPDNSLA  433 (450)
T ss_pred             ecCCcEECccceeccccccccCCcEeCCCeEeCCCCEEeCCcEECCCCEECCCCEECcc--CCCCCEE
Confidence            77777777776652       36788888888888888888888888888888888775  4555544

>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

Probab=99.72  E-value=6.8e-17  Score=118.25  Aligned_cols=103  Identities=22%  Similarity=0.223  Sum_probs=71.5

Q ss_pred             ceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEE
Q 025890          118 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI  197 (246)
Q Consensus       118 ~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~i  197 (246)
                      ++.||+++.|++++.+..    ++.|++++.++.++.+.. ..+.... +.... ...+++|+++|+|+.++.+.+++.|
T Consensus        16 ~~~Ig~~~~I~~~~~i~~----~~~Ig~~~~I~~~~~i~~-~~~~~~~-~~~~~-~~~~~~Ig~~~~Ig~~~~v~~~~~i   88 (119)
T cd03358          16 DVKIGDNVKIQSNVSIYE----GVTIEDDVFIGPNVVFTN-DLYPRSK-IYRKW-ELKGTTVKRGASIGANATILPGVTI   88 (119)
T ss_pred             CcEECCCcEECCCcEEeC----CeEECCCcEEcCCeEEec-CCCCccc-ccccc-ccCCcEECCCcEECcCCEEeCCcEE
Confidence            466666666666665542    345555555544444422 1111111 11111 1356899999999999999999999


Q ss_pred             CCCCEEccCcEEeccCCCCCeEEccCchhh
Q 025890          198 ASKVRLAANSCVFKDITEPGDYGGFPAVPI  227 (246)
Q Consensus       198 g~~~~v~~~s~v~~~~~~~~~~~g~p~~~~  227 (246)
                      ++++.|++++++++++|+++++.|+|||.+
T Consensus        89 g~~~~i~~~~~v~~~i~~~~~~~G~pa~~~  118 (119)
T cd03358          89 GEYALVGAGAVVTKDVPPYALVVGNPARII  118 (119)
T ss_pred             CCCCEEccCCEEeCcCCCCeEEecCcceec
Confidence            999999999999999999999999999875

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.

>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional

Probab=99.72  E-value=6.2e-17  Score=128.17  Aligned_cols=135  Identities=23%  Similarity=0.222  Sum_probs=104.8

Q ss_pred             eccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccC
Q 025890           79 SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHN  158 (246)
Q Consensus        79 ~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~  158 (246)
                      .+..+|+++.++.++.+...                ......||+++.|++++.|...  .++.||+++.++.++.+..+
T Consensus        42 ~~I~iG~~v~i~~~~ri~~~----------------~~~~i~IG~~v~Ig~~v~I~~~--~~v~IG~~v~Ig~~v~I~~~  103 (192)
T PRK09677         42 GSINFGEGFTSGVGLRLDAF----------------GRGKLFFGDNVQVNDYVHIACI--ESITIGRDTLIASKVFITDH  103 (192)
T ss_pred             CeEEECCceEECCCeEEEec----------------CCCeEEECCCCEECCCcEEccC--ceEEECCCCEECCCeEEECC
Confidence            56778888888888888431                1127899999999999998854  46788888888888877543


Q ss_pred             cEECC----CcE----E--ccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhhH
Q 025890          159 VAIGK----SCM----L--CGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIH  228 (246)
Q Consensus       159 ~~Ig~----~~~----i--~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~  228 (246)
                      .. +.    ..+    +  .......++++||++|+||.++.+.++++|+++++|+++|+|++++|+++++.|+||+.++
T Consensus       104 ~h-g~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v~~~i~~~~~~~G~Pa~~ik  182 (192)
T PRK09677        104 NH-GSFKHSDDFSSPNLPPDMRTLESSAVVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTKSIPENTVIAGNPAKIIK  182 (192)
T ss_pred             CC-ccccccccccccccChhhcccccCCeEEcCCcEECCCCEEcCCCEECCCCEECCCCEECcccCCCcEEEecCCEEEe
Confidence            21 10    000    1  0111224569999999999999999999999999999999999999999999999999998


Q ss_pred             HHHH
Q 025890          229 EWRR  232 (246)
Q Consensus       229 ~~~~  232 (246)
                      .+..
T Consensus       183 ~~~~  186 (192)
T PRK09677        183 KYNH  186 (192)
T ss_pred             ccCc
Confidence            8765

>PRK10092 maltose O-acetyltransferase; Provisional

Probab=99.72  E-value=8.2e-17  Score=126.07  Aligned_cols=58  Identities=33%  Similarity=0.489  Sum_probs=53.9

Q ss_pred             eEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhhHH
Q 025890          172 GIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHE  229 (246)
Q Consensus       172 ~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~  229 (246)
                      .+.+++.||++||||++++|.+++.||++++|+++|+|++|+|+++++.|+||+.++.
T Consensus       125 ~~~~~v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~~di~~~~i~~G~PAr~i~~  182 (183)
T PRK10092        125 ELGKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKDVPDNVVVGGNPARIIKK  182 (183)
T ss_pred             eecCCeEECCCcEECCCCEECCCCEECCCCEECCCCEEccccCCCcEEEecCcEEeec
Confidence            3456799999999999999999999999999999999999999999999999998764

>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates

Probab=99.72  E-value=9.8e-17  Score=124.63  Aligned_cols=56  Identities=38%  Similarity=0.395  Sum_probs=52.1

Q ss_pred             eEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhh
Q 025890          172 GIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI  227 (246)
Q Consensus       172 ~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~  227 (246)
                      ....+++||++|+||.+++|.++++||++++|+++|+|++++|+++++.|+|||.+
T Consensus       114 ~~~~~v~IG~~~~Ig~~a~I~~gv~Ig~~~~VgagavV~~~vp~~~vv~G~PAkvi  169 (169)
T cd03357         114 EYAKPITIGDNVWIGGGVIILPGVTIGDNSVIGAGSVVTKDIPANVVAAGNPARVI  169 (169)
T ss_pred             eecCCcEeCCCEEECCCCEEeCCCEECCCCEECCCCEEccccCCCcEEEccccEEC
Confidence            34567999999999999999999999999999999999999999999999999853

MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional

Probab=99.72  E-value=1.5e-16  Score=130.75  Aligned_cols=72  Identities=14%  Similarity=0.212  Sum_probs=54.1

Q ss_pred             CcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEE-c-----------cCch
Q 025890          158 NVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYG-G-----------FPAV  225 (246)
Q Consensus       158 ~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~-g-----------~p~~  225 (246)
                      ++.|+++|+|+.++.+..+++||++|.|+++++|.+++.|++.+   +++++.+++|+++.+. |           .||+
T Consensus       176 ~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~gt~I~~~~---~g~v~~g~vp~~svvv~g~~~~~~~~~~~~~~~  252 (272)
T PRK11830        176 PVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQSTKIYDRE---TGEVHYGRVPAGSVVVPGSLPSKDGGYSLYCAV  252 (272)
T ss_pred             CeEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcCCeEECcCC---CCcEEeeecCCCcEEecCcccccCCCcCCcCcE
Confidence            45666666666666667778888888888888888888888873   7788888899988765 6           3777


Q ss_pred             hhHHHHH
Q 025890          226 PIHEWRR  232 (246)
Q Consensus       226 ~~~~~~~  232 (246)
                      .++++..
T Consensus       253 i~~~~~~  259 (272)
T PRK11830        253 IVKKVDA  259 (272)
T ss_pred             EEEEccc
Confidence            7766644

>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

Probab=99.71  E-value=9.3e-16  Score=117.30  Aligned_cols=53  Identities=30%  Similarity=0.261  Sum_probs=27.1

Q ss_pred             EECCCeEECcCcEECCCcEECCCCEEccCcEEec--cCCCCCeEEccCchhhHHH
Q 025890          178 TIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFK--DITEPGDYGGFPAVPIHEW  230 (246)
Q Consensus       178 ~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~--~~~~~~~~~g~p~~~~~~~  230 (246)
                      .|+++++|+.++.+.+++.|+++++|++++.+.+  .+|+++++.|.|++..+++
T Consensus        79 ~Ig~~~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~~~~i~~~~~~~g~~~~~~~~~  133 (153)
T cd04645          79 TIGDNCLIGMGAIILDGAVIGKGSIVAAGSLVPPGKVIPPGSLVAGSPAKVVREL  133 (153)
T ss_pred             EECCCCEECCCCEEcCCCEECCCCEECCCCEECCCCEeCCCCEEeCCcchhcccC
Confidence            4444444444444444444444444444444443  3455666666666665555

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.

>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

Probab=99.71  E-value=4e-16  Score=123.38  Aligned_cols=102  Identities=29%  Similarity=0.413  Sum_probs=89.1

Q ss_pred             ceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEE
Q 025890          118 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI  197 (246)
Q Consensus       118 ~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~i  197 (246)
                      .+.+++++.|+++++|..    ++.||+++.++.++.+++++.||+++.++.++.+.+++.|+++|+|+.++.+.+++.|
T Consensus        96 ~~~ig~~~~i~~~~~i~~----~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~i  171 (197)
T cd03360          96 SAVIGEGCVIMAGAVINP----DARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATIIQGVTI  171 (197)
T ss_pred             CCEECCCCEEcCCCEECC----CCEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEEcCCCEE
Confidence            455666666666666663    4677788888888888888999999999999999999999999999999999999999


Q ss_pred             CCCCEEccCcEEeccCCCCCeEEccC
Q 025890          198 ASKVRLAANSCVFKDITEPGDYGGFP  223 (246)
Q Consensus       198 g~~~~v~~~s~v~~~~~~~~~~~g~p  223 (246)
                      ++++.|+++|++.+++|+++++.|+|
T Consensus       172 g~~~~v~~~~~v~~~~~~~~~~~g~p  197 (197)
T cd03360         172 GAGAIIGAGAVVTKDVPDGSVVVGNP  197 (197)
T ss_pred             CCCCEECCCCEEcCCCCCCCEEEecC
Confidence            99999999999999999999999998

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.

>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.71  E-value=3.6e-16  Score=120.49  Aligned_cols=64  Identities=23%  Similarity=0.291  Sum_probs=40.2

Q ss_pred             EECCCeEECcCcEECCCcEECCCCEEccCcEEecc--CCCCCeEEccCchhhHHHHHHhhhhhhcc
Q 025890          178 TIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKD--ITEPGDYGGFPAVPIHEWRRQVANQIRSS  241 (246)
Q Consensus       178 ~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~--~~~~~~~~g~p~~~~~~~~~~~~~~~~~~  241 (246)
                      .|+++++|+.++.+..++.|++++.|++++++..+  +|+++++.|+|++.++.+.+..+.+.+..
T Consensus        91 ~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~~~i~~~~vv~g~pa~~i~~~~~~~~~~~~~~  156 (161)
T cd03359          91 QIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPDTVIPPYSVVSGRPARFIGELPECTQELMEEE  156 (161)
T ss_pred             EEcCCcEECCCCEEcCCCEECCCcEECCCCEECCCCEeCCCCEEeccccEEEEecchhhhHHHHhh
Confidence            34444444444444444444445555555544443  68899999999999998887777766554

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition

Probab=99.70  E-value=4.6e-16  Score=118.96  Aligned_cols=131  Identities=18%  Similarity=0.238  Sum_probs=94.0

Q ss_pred             ECCCCEECCceEE-eccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEEC
Q 025890           66 IGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIG  144 (246)
Q Consensus        66 ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig  144 (246)
                      +.+++.|.+.+.| .++.||++|.|++++.|..+.                 ..+.||+++.|+++|.|.....      
T Consensus         3 ~~~~~~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~-----------------~~i~Ig~~~~Ig~~~~I~~~~~------   59 (154)
T cd04650           3 ISPKAYVHPTSYVIGDVVIGELTSVWHYAVIRGDN-----------------DSIYIGKYSNVQENVSIHTDHG------   59 (154)
T ss_pred             cCCCeEECCCCEEEeeEEECCCCEEcCCeEEEcCC-----------------CcEEECCCCEECCCCEEEeCCC------
Confidence            3455556666656 678888888888888886421                 1468888888888887764211      


Q ss_pred             CCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEec--cCCCCCeEEcc
Q 025890          145 DHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFK--DITEPGDYGGF  222 (246)
Q Consensus       145 ~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~--~~~~~~~~~g~  222 (246)
                                  .++.|++++.++.++.+ .++.|+++|+|+.++.+.+++.|++++++++++.+.+  +++++.++.|+
T Consensus        60 ------------~~~~Ig~~~~I~~~~~i-~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~g~~i~~~~v~~G~  126 (154)
T cd04650          60 ------------YPTEIGDYVTIGHNAVV-HGAKVGNYVIVGMGAILLNGAKIGDHVIIGAGAVVTPGKEIPDYSLVLGV  126 (154)
T ss_pred             ------------CCeEECCCCEECCCcEE-ECcEECCCCEEcCCCEEeCCCEECCCCEECCCCEECCCcEeCCCCEEecc
Confidence                        12333333333333333 2467888888888888888899999999999998884  78999999999


Q ss_pred             CchhhHHHHH
Q 025890          223 PAVPIHEWRR  232 (246)
Q Consensus       223 p~~~~~~~~~  232 (246)
                      |++.++.+..
T Consensus       127 pa~~~~~~~~  136 (154)
T cd04650         127 PAKVVRKLTE  136 (154)
T ss_pred             CceEeccCCH
Confidence            9999887765

It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.

>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E

Probab=99.70  E-value=1.4e-15  Score=116.57  Aligned_cols=58  Identities=17%  Similarity=0.345  Sum_probs=42.2

Q ss_pred             CcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEc-cCcEEeccCCC
Q 025890          158 NVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLA-ANSCVFKDITE  215 (246)
Q Consensus       158 ~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~-~~s~v~~~~~~  215 (246)
                      ++.||++++++.++.+..+++|+++|+|++++++.+++.|++++++. ..+.+.+.+++
T Consensus        78 ~~~Ig~~~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~~~i~~~~~v~G~Pa~~~~~~~~  136 (155)
T cd04745          78 GCTIGRNALVGMNAVVMDGAVIGEESIVGAMAFVKAGTVIPPRSLIAGSPAKVIRELSD  136 (155)
T ss_pred             CCEECCCCEECCCCEEeCCCEECCCCEECCCCEeCCCCEeCCCCEEecCCceEeccCCH
Confidence            35556666666666666778899999999999999999999998764 34555555443

coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.

>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function

Probab=99.70  E-value=9.5e-16  Score=142.42  Aligned_cols=86  Identities=29%  Similarity=0.322  Sum_probs=70.0

Q ss_pred             cCeEECCCCEECCCCEEccC-cEECCCcEEccceeE-----------ecceEECCCeEECcCcEECCCcEECCCCEEccC
Q 025890          139 RDTVIGDHSKIDNLVQIGHN-VAIGKSCMLCGQVGI-----------AGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN  206 (246)
Q Consensus       139 ~~~~ig~~~~v~~~~~i~~~-~~Ig~~~~i~~~~~~-----------~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~  206 (246)
                      .+++||+++.++.....+++ +.||++|.|+.++.+           .++++||++|+||.++++.+++.||+++.|+++
T Consensus       596 lGa~IG~~v~i~~~~~~~~dlv~IGd~~~I~~~~~i~~h~~~~~~~~~~~v~IG~~~~IG~~a~V~~g~~IGd~a~Ig~~  675 (695)
T TIGR02353       596 LGVKIGRGVYIDGTDLTERDLVTIGDDSTLNEGSVIQTHLFEDRVMKSDTVTIGDGATLGPGAIVLYGVVMGEGSVLGPD  675 (695)
T ss_pred             CCCEECCCeEECCeeccCCCCeEECCCCEECCCCEEEeccccccccccCCeEECCCCEECCCCEECCCCEECCCCEECCC
Confidence            45778888888776444333 355555555555554           457999999999999999999999999999999


Q ss_pred             cEEec--cCCCCCeEEccCc
Q 025890          207 SCVFK--DITEPGDYGGFPA  224 (246)
Q Consensus       207 s~v~~--~~~~~~~~~g~p~  224 (246)
                      |++.+  ++|+++.+.|+|+
T Consensus       676 SvV~~g~~vp~~s~~~G~Pa  695 (695)
T TIGR02353       676 SLVMKGEEVPAHTRWRGNPA  695 (695)
T ss_pred             CEEcCCcccCCCCEEEeccC
Confidence            99998  7999999999996

This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.

>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.69  E-value=1.2e-15  Score=124.30  Aligned_cols=96  Identities=16%  Similarity=0.059  Sum_probs=51.4

Q ss_pred             cCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCe
Q 025890          139 RDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGD  218 (246)
Q Consensus       139 ~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~  218 (246)
                      +++.|+++|+++.++.|.+++.||++++|+.++.+..+++|.+..   .+..+.+  .|+++++|.||+...++ .++++
T Consensus       172 ~~ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI~~~~~I~~~~---~g~v~~~--~vp~~svv~~g~~p~~~-g~~~~  245 (269)
T TIGR00965       172 NPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQSTKIYDRE---TGEIHYG--RVPAGSVVVSGNLPSKD-GKYSL  245 (269)
T ss_pred             CCeEECCCCEECCCCEEcCCCEECCCCEEeCCCEECCCCEEeccc---CCceeee--ecCCCcEEecCCeecCC-Ccccc
Confidence            345555556666666666666666666666666556666666644   3333322  37788888888777654 23333


Q ss_pred             EEccCchhhHHHHHHhhhhhhc
Q 025890          219 YGGFPAVPIHEWRRQVANQIRS  240 (246)
Q Consensus       219 ~~g~p~~~~~~~~~~~~~~~~~  240 (246)
                      ..-.-.|..+...+.+..++.+
T Consensus       246 ~~a~ivk~~d~~t~~k~~~~~~  267 (269)
T TIGR00965       246 YCAVIVKKVDAKTRGKVSINEL  267 (269)
T ss_pred             ceeEEEEEechhhhhhhhhHHh
Confidence            3222223333444444444433

The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).

>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition

Probab=99.69  E-value=3e-15  Score=114.47  Aligned_cols=96  Identities=25%  Similarity=0.335  Sum_probs=63.3

Q ss_pred             cEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcE
Q 025890           81 CIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVA  160 (246)
Q Consensus        81 ~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~  160 (246)
                      ++||++|.|+++|.|..+.                ..++.||+++.|+.++.+.                       ++.
T Consensus        40 i~Ig~~~~Ig~~~~I~~~~----------------~~~~~Ig~~~~I~~~~~i~-----------------------~~~   80 (154)
T cd04650          40 IYIGKYSNVQENVSIHTDH----------------GYPTEIGDYVTIGHNAVVH-----------------------GAK   80 (154)
T ss_pred             EEECCCCEECCCCEEEeCC----------------CCCeEECCCCEECCCcEEE-----------------------CcE
Confidence            3555666666666664210                0146677777777666553                       234


Q ss_pred             ECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCE-EccCcEEeccCCC
Q 025890          161 IGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVR-LAANSCVFKDITE  215 (246)
Q Consensus       161 Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~-v~~~s~v~~~~~~  215 (246)
                      |+++++++.++.+..+++|++++++++++.+.++..++++++ .+..+.+.+++++
T Consensus        81 Ig~~~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~g~~i~~~~v~~G~pa~~~~~~~~  136 (154)
T cd04650          81 VGNYVIVGMGAILLNGAKIGDHVIIGAGAVVTPGKEIPDYSLVLGVPAKVVRKLTE  136 (154)
T ss_pred             ECCCCEEcCCCEEeCCCEECCCCEECCCCEECCCcEeCCCCEEeccCceEeccCCH
Confidence            444445555555566788999999999999999999999998 5666777666654

It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.

>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E

Probab=99.69  E-value=5.8e-16  Score=111.22  Aligned_cols=55  Identities=31%  Similarity=0.370  Sum_probs=51.9

Q ss_pred             eEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchh
Q 025890          172 GIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVP  226 (246)
Q Consensus       172 ~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~  226 (246)
                      ...++++||++|+|+.++.+.++++|+++++|+++|++++++|+++++.|+||+.
T Consensus        52 ~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~i~~gs~v~~~~~~~~~~~G~Pa~~  106 (107)
T cd05825          52 LITAPIVIGDGAWVAAEAFVGPGVTIGEGAVVGARSVVVRDLPAWTVYAGNPAVP  106 (107)
T ss_pred             eecCCEEECCCCEECCCCEECCCCEECCCCEECCCCEEeCcCCCCCEEECCccEe
Confidence            4457799999999999999999999999999999999999999999999999985

coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.

>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains

Probab=99.68  E-value=3.7e-15  Score=115.17  Aligned_cols=145  Identities=21%  Similarity=0.337  Sum_probs=92.7

Q ss_pred             cCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEe-ccEECCCcEECCCeEECCCCceeEEcCCCceeecCc
Q 025890           37 EVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQ  115 (246)
Q Consensus        37 ~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~-~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~  115 (246)
                      .+++.+.++++|+++++|++++.|.+++.|+++|.|++++.|. ++.|+++|.|++++.|.                   
T Consensus         9 ~~~~~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~-------------------   69 (163)
T cd05636           9 EEGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVK-------------------   69 (163)
T ss_pred             CCCCEECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEe-------------------
Confidence            4445555556666666666666666667777777777777774 58888999999999886                   


Q ss_pred             ccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEEC---CCeEECcCcEEC
Q 025890          116 LLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIG---DYVTLGGRVAVR  192 (246)
Q Consensus       116 ~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig---~~~~Ig~~~~v~  192 (246)
                        ++.|++++.+++++.+.     ++.+++++.+++++.+. +..+++.. +... ........+   .++.|+.++.+.
T Consensus        70 --~siig~~~~I~~~~~i~-----~siIg~~~~I~~~~~i~-~~~~~~~~-~~~~-~~~~~~~~~~~~~~~iIg~~~~ig  139 (163)
T cd05636          70 --NSIIMDGTKVPHLNYVG-----DSVLGENVNLGAGTITA-NLRFDDKP-VKVR-LKGERVDTGRRKLGAIIGDGVKTG  139 (163)
T ss_pred             --eeEecCCCEeccCCEEe-----cCEECCCCEECCCcEEc-ccCcCCcc-eEEE-ecCcceecCCcccCcEEcCCeEEC
Confidence              78899999998888775     35667766666666652 22222211 0000 001111222   257777777777


Q ss_pred             CCcEECCCCEEccCcEEe
Q 025890          193 DHVSIASKVRLAANSCVF  210 (246)
Q Consensus       193 ~~~~ig~~~~v~~~s~v~  210 (246)
                      .++.|.+++.|++++++.
T Consensus       140 ~~~~i~~g~~ig~~~~i~  157 (163)
T cd05636         140 INVSLNPGVKIGPGSWVY  157 (163)
T ss_pred             CCcEECCCcEECCCCEEC
Confidence            777777777777777763

Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA

Probab=99.68  E-value=3.8e-15  Score=112.04  Aligned_cols=126  Identities=21%  Similarity=0.248  Sum_probs=73.8

Q ss_pred             eeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCcee
Q 025890           23 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGF  102 (246)
Q Consensus        23 ~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~  102 (246)
                      .+++.+++++++.|++++.|.+++++..+++|+++++|.+++.|+++           +.|+++|.|++++.++...   
T Consensus         3 ~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~-----------~~IG~~~~I~~~~~igg~~---   68 (139)
T cd03350           3 RVPPGAIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSC-----------AQIGKNVHLSAGAVIGGVL---   68 (139)
T ss_pred             ccCCCcEECCCCEECCCCEECCCCEEccCCEECCCeEEcCCCEECCC-----------CEECCCCEECCCCEECCcc---
Confidence            34555555555555555555555555555555554444444444333           3344555555555554210   


Q ss_pred             EEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCC
Q 025890          103 FVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDY  182 (246)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~  182 (246)
                                                     ......++.|++++.++.++.+.+++.|++++.++.++.+.++++|+++
T Consensus        69 -------------------------------~~~~~~~v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~~~I~~~  117 (139)
T cd03350          69 -------------------------------EPLQATPVIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQSTPIYDR  117 (139)
T ss_pred             -------------------------------cccccCCeEECCCCEECCCCEECCCCEECCCCEEcCCCEEcCCeEeccc
Confidence                                           0001134556666666666666677777777888888888888888888


Q ss_pred             eEECcCcEECCCcE
Q 025890          183 VTLGGRVAVRDHVS  196 (246)
Q Consensus       183 ~~Ig~~~~v~~~~~  196 (246)
                         ++++++.+++.
T Consensus       118 ---~~~~~v~~~~~  128 (139)
T cd03350         118 ---ETGEIYYGRVP  128 (139)
T ss_pred             ---CcccEEecccC
Confidence               99999988854

It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.

>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site

Probab=99.67  E-value=2.9e-15  Score=116.19  Aligned_cols=140  Identities=22%  Similarity=0.228  Sum_probs=91.1

Q ss_pred             ECCCCEECCceEE-eccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEEC
Q 025890           66 IGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIG  144 (246)
Q Consensus        66 ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig  144 (246)
                      |++++.|.+++.| .++.||++|.|++++.|..+.                ...+.||+++.|++++.+...        
T Consensus         5 ig~~~~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~----------------~~~v~IG~~~~I~~~~~i~~~--------   60 (167)
T cd00710           5 IDPSAYVHPTAVVIGDVIIGDNVFVGPGASIRADE----------------GTPIIIGANVNIQDGVVIHAL--------   60 (167)
T ss_pred             eCCCeEECCCCEEEeeEEECCCcEECCCcEEeCCC----------------CCcEEECCCCEECCCeEEEec--------
Confidence            3444444444444 356666666666666664311                013455555555555544311        


Q ss_pred             CCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEec-cCCCCCe-----
Q 025890          145 DHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFK-DITEPGD-----  218 (246)
Q Consensus       145 ~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~-~~~~~~~-----  218 (246)
                                ....+.||+++.+++++.+.++++||++|+||.++.+. ++.|++++.|+++|.+.+ .++++..     
T Consensus        61 ----------~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~-~~~Ig~~~~Ig~~s~i~~~~i~~~~~v~~~~  129 (167)
T cd00710          61 ----------EGYSVWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVF-NAKVGDNCVIGHNAVVDGVEIPPGRYVPAGA  129 (167)
T ss_pred             ----------CCCCEEECCCceECCCCEEeCCEEECCCCEECCCCEEE-CCEECCCCEEcCCCEEeCCEeCCCCEECCCC
Confidence                      03567888888888888888899999999999999986 799999999999999874 4555443     


Q ss_pred             -EE-ccCchhhHHHHHHhhhhhhc
Q 025890          219 -YG-GFPAVPIHEWRRQVANQIRS  240 (246)
Q Consensus       219 -~~-g~p~~~~~~~~~~~~~~~~~  240 (246)
                       +. +.|++.+..+.++.++|.+-
T Consensus       130 ~v~~~~~~~~~~~~~~~~~~~~~~  153 (167)
T cd00710         130 VITSQTQADALPDVTDSAREFNEK  153 (167)
T ss_pred             EEcCCCcccccccCChhHHHHHHH
Confidence             32 45666666666666655543

They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.

>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]

Probab=99.66  E-value=4.3e-16  Score=123.34  Aligned_cols=60  Identities=32%  Similarity=0.353  Sum_probs=55.2

Q ss_pred             EecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhhHHHHH
Q 025890          173 IAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRR  232 (246)
Q Consensus       173 ~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~~~~  232 (246)
                      ..++++||++||||.+++|+++++||++++|+++|+|+||+|+++++.|+||+.+++...
T Consensus       121 ~~~~v~IG~~vwIG~~a~IlpGV~IG~gavigagsVVtkdvp~~~iv~G~Pa~vir~~~~  180 (190)
T COG0110         121 GAGPVTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVVTKDVPPYGIVAGNPARVIRKRDV  180 (190)
T ss_pred             ecCCeEECCCeEEcCccEECCCEEECCCcEEeeCCEEeCccCCCeEEeCCcceEEEecch
Confidence            345799999999999999999999999999999999999999999999999998866543

>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase

Probab=99.66  E-value=3.4e-15  Score=121.15  Aligned_cols=47  Identities=13%  Similarity=0.234  Sum_probs=33.8

Q ss_pred             cCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEcc
Q 025890          157 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA  205 (246)
Q Consensus       157 ~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~  205 (246)
                      ..+.|+++++++.++.+..+++|+++++|+++++|.++  +++++++..
T Consensus       159 ~~v~IGd~v~IG~gsvI~~g~~Ig~~~~IgagsvV~~d--i~~~~vv~G  205 (231)
T TIGR03532       159 KPVVIEDNVLIGANAVILEGVRVGKGAVVAAGAIVTED--VPPNTVVAG  205 (231)
T ss_pred             CCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEccc--cCCCcEEEe
Confidence            34556666666666666777888999999999998875  667766553

Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.

>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

Probab=99.66  E-value=3.3e-15  Score=114.26  Aligned_cols=132  Identities=21%  Similarity=0.303  Sum_probs=112.0

Q ss_pred             ECCCCEECCceEE-eccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEEC
Q 025890           66 IGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIG  144 (246)
Q Consensus        66 ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig  144 (246)
                      ++++++|.+++.| .++.||+++.|++++.|....                 ..++||+++.|+++++|......++.|+
T Consensus         2 ~~~~~~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~-----------------~~~~IG~~~~I~~~~~I~~~~~~~~~Ig   64 (153)
T cd04645           2 IDPSAFIAPNATVIGDVTLGEGSSVWFGAVLRGDV-----------------NPIRIGERTNIQDGSVLHVDPGYPTIIG   64 (153)
T ss_pred             ccCCeEECCCCEEEEeEEECCCcEEcCCeEEECCC-----------------CceEECCCCEECCCcEEecCCCCCeEEc
Confidence            4566667777777 689999999999999986421                 2689999999999999986544568999


Q ss_pred             CCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEE-ccCcEEeccCCC
Q 025890          145 DHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL-AANSCVFKDITE  215 (246)
Q Consensus       145 ~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v-~~~s~v~~~~~~  215 (246)
                      +++.++.++.+ .++.|+++++++.++.+..+++|+++|+|+.++.+.+++.+++++++ +..+.+.++++.
T Consensus        65 ~~~~I~~~~~i-~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~~~~i~~~~~~~g~~~~~~~~~~~  135 (153)
T cd04645          65 DNVTVGHGAVL-HGCTIGDNCLIGMGAIILDGAVIGKGSIVAAGSLVPPGKVIPPGSLVAGSPAKVVRELTD  135 (153)
T ss_pred             CCcEECCCcEE-eeeEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCCEeCCCCEEeCCcchhcccCCH
Confidence            99999999999 56999999999999999999999999999999999999999999888 566666666665

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.

>TIGR02287 PaaY phenylacetic acid degradation protein PaaY

Probab=99.66  E-value=4.4e-15  Score=117.13  Aligned_cols=134  Identities=15%  Similarity=0.294  Sum_probs=87.2

Q ss_pred             EcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeEEcCCCceeecCc
Q 025890           36 IEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQ  115 (246)
Q Consensus        36 I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~  115 (246)
                      |++++.|++.+.|.+++.|+++|.|.++++|..+        +..++||++|.|+++|.|+...                
T Consensus        11 i~~~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd--------~g~i~Ig~~t~Ig~~~~I~~~~----------------   66 (192)
T TIGR02287        11 VHPEAYVHPTAVLIGDVILGKRCYVGPLASLRGD--------FGRIVLKEGANIQDNCVMHGFP----------------   66 (192)
T ss_pred             CCCCcEECCCCEEEeeEEECCCCEECCCcEEEcc--------CCceEECCCCEECCCeEEeccC----------------
Confidence            4555555555555555555555555555544332        1346788888888888884211                


Q ss_pred             ccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCc
Q 025890          116 LLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHV  195 (246)
Q Consensus       116 ~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~  195 (246)
                      ..++.|++++.|++++.+.                       ++.|++++.++.++.+..+++||++|.|++++.+.+++
T Consensus        67 ~~~siIg~~~~Ig~~a~I~-----------------------~siIg~~~~IG~ga~I~~g~~IG~~s~Vgags~V~~~~  123 (192)
T TIGR02287        67 GQDTVVEENGHVGHGAILH-----------------------GCIVGRNALVGMNAVVMDGAVIGENSIVAASAFVKAGA  123 (192)
T ss_pred             CCCCeECCCCEECCCCEEc-----------------------CCEECCCCEECCCcccCCCeEECCCCEEcCCCEECCCC
Confidence            0156777777777666553                       45555555555555666678899999999999999999


Q ss_pred             EECCCCEEc-cCcEEeccCCCC
Q 025890          196 SIASKVRLA-ANSCVFKDITEP  216 (246)
Q Consensus       196 ~ig~~~~v~-~~s~v~~~~~~~  216 (246)
                      .|++++.+. ..+.+.+.+.+.
T Consensus       124 ~ip~~~l~~G~Pak~i~~~~~~  145 (192)
T TIGR02287       124 EMPAQYLVVGSPAKVIRELSEQ  145 (192)
T ss_pred             EECCCeEEEccCCEEeccCCHH
Confidence            999988754 446666666553

Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.

>PRK11132 cysE serine acetyltransferase; Provisional

Probab=99.65  E-value=9.6e-16  Score=126.10  Aligned_cols=107  Identities=21%  Similarity=0.302  Sum_probs=74.6

Q ss_pred             ceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEE
Q 025890          118 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI  197 (246)
Q Consensus       118 ~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~i  197 (246)
                      .+.|+..+.||+++.|..+  .++.||+++.|++++.|.++++||....-.    -..+.+||++|+||+++.|.++++|
T Consensus       141 gidI~~~a~IG~g~~I~h~--~givIG~~a~IGdnv~I~~~VtiGg~~~~~----~~~~p~IGd~V~IGaga~Ilggv~I  214 (273)
T PRK11132        141 QVDIHPAAKIGRGIMLDHA--TGIVIGETAVIENDVSILQSVTLGGTGKTS----GDRHPKIREGVMIGAGAKILGNIEV  214 (273)
T ss_pred             eeEecCcceECCCeEEcCC--CCeEECCCCEECCCCEEcCCcEEecCcccC----CCcCCEECCCcEEcCCCEEcCCCEE
Confidence            3444444444444444432  234555555555555555555555321110    0124799999999999999999999


Q ss_pred             CCCCEEccCcEEeccCCCCCeEEccCchhhHHH
Q 025890          198 ASKVRLAANSCVFKDITEPGDYGGFPAVPIHEW  230 (246)
Q Consensus       198 g~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~~  230 (246)
                      |++++|+++|+|++|+|+++++.|+||+.++..
T Consensus       215 G~~a~IGAgSvV~~dVp~~~~v~G~PArvi~~~  247 (273)
T PRK11132        215 GRGAKIGAGSVVLQPVPPHTTAAGVPARIVGKP  247 (273)
T ss_pred             CCCCEECCCCEECcccCCCcEEEecCcEEeCcc
Confidence            999999999999999999999999999987654

>PRK13627 carnitine operon protein CaiE; Provisional

Probab=99.63  E-value=9.7e-15  Score=115.55  Aligned_cols=59  Identities=15%  Similarity=0.241  Sum_probs=46.0

Q ss_pred             cCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEE-ccCcEEeccCCC
Q 025890          157 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL-AANSCVFKDITE  215 (246)
Q Consensus       157 ~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v-~~~s~v~~~~~~  215 (246)
                      +++.||++++++.++.+..+++||+++.|+++++|.+++.+++++++ +..+...+++.+
T Consensus        87 ~g~vIG~~v~IG~ga~V~~g~~IG~~s~Vgags~V~~~~~ip~~~~~~G~Pa~~~~~~~~  146 (196)
T PRK13627         87 HGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEKRQLLMGTPARAVRSVSD  146 (196)
T ss_pred             eeEEECCCCEECcCCccCCCcEECCCCEEcCCCEEeCCcCcCCCcEEEecCCEEeccCCH
Confidence            45566666666666777778899999999999999999999888754 555777777765

>PLN02739 serine acetyltransferase

Probab=99.63  E-value=1.5e-15  Score=127.32  Aligned_cols=107  Identities=30%  Similarity=0.351  Sum_probs=82.7

Q ss_pred             ceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEE
Q 025890          118 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI  197 (246)
Q Consensus       118 ~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~i  197 (246)
                      .+.|+..+.||.++.|..+  .++.||+++.|++++.|.++++||....-    .-..+++||++|+||++++|.++++|
T Consensus       205 GidI~p~A~IG~Gv~IdHg--~GVVIG~~avIGdnv~I~~gVTIGg~g~~----~g~r~p~IGd~V~IGagA~IlG~V~I  278 (355)
T PLN02739        205 GIDIHPAARIGKGILLDHG--TGVVIGETAVIGDRVSILHGVTLGGTGKE----TGDRHPKIGDGALLGACVTILGNISI  278 (355)
T ss_pred             CcccCCCccccCceEEecC--CceEECCCCEECCCCEEcCCceeCCcCCc----CCCCCcEECCCCEEcCCCEEeCCeEE
Confidence            5567777777777777643  35667776666666666666666642110    00235899999999999999999999


Q ss_pred             CCCCEEccCcEEeccCCCCCeEEccCchhhHHH
Q 025890          198 ASKVRLAANSCVFKDITEPGDYGGFPAVPIHEW  230 (246)
Q Consensus       198 g~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~~  230 (246)
                      |++++|+++|+|++|+|+++++.|+||+.++..
T Consensus       279 Gd~aiIGAGSVV~kDVP~~stvvG~PAriI~~~  311 (355)
T PLN02739        279 GAGAMVAAGSLVLKDVPSHSMVAGNPAKLIGFV  311 (355)
T ss_pred             CCCCEECCCCEECCCCCCCcEEEecCCEEeccC
Confidence            999999999999999999999999999988755

>PLN02472 uncharacterized protein

Probab=99.63  E-value=2.7e-14  Score=116.47  Aligned_cols=102  Identities=13%  Similarity=0.103  Sum_probs=62.6

Q ss_pred             cEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcE
Q 025890           81 CIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVA  160 (246)
Q Consensus        81 ~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~  160 (246)
                      ..||+++.|+++|.|+......          ..-...++||+++.|++++.+                       ++|.
T Consensus        99 I~IG~~t~Ig~~~vI~~~~~~~----------~~i~~~tvIG~~v~IG~~s~L-----------------------~~~~  145 (246)
T PLN02472         99 ITVGFCSNVQERCVLHAAWNSP----------TGLPAETLIDRYVTIGAYSLL-----------------------RSCT  145 (246)
T ss_pred             eEECCCCEECCCCEEeecCccc----------cCCCCCcEECCCCEECCCcEE-----------------------CCeE
Confidence            4677777777777775311000          000014555555555555544                       3445


Q ss_pred             ECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEc-cCcEEeccCCC
Q 025890          161 IGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLA-ANSCVFKDITE  215 (246)
Q Consensus       161 Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~-~~s~v~~~~~~  215 (246)
                      |++++.|+.++.+..+++|+++|.|++++++.++..++++.++. ..+...+++.+
T Consensus       146 Igd~v~IG~~svI~~gavIg~~~~Ig~gsvV~~g~~Ip~g~~~~G~PA~~~~~~~~  201 (246)
T PLN02472        146 IEPECIIGQHSILMEGSLVETHSILEAGSVLPPGRRIPTGELWAGNPARFVRTLTN  201 (246)
T ss_pred             EcCCCEECCCCEECCCCEECCCCEECCCCEECCCCEeCCCCEEEecCCEEeccCCH
Confidence            55555555555556678889999999999999999998888764 34555555554

>PLN02694 serine O-acetyltransferase

Probab=99.62  E-value=3.8e-15  Score=122.62  Aligned_cols=107  Identities=27%  Similarity=0.362  Sum_probs=85.1

Q ss_pred             ceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEE
Q 025890          118 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI  197 (246)
Q Consensus       118 ~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~i  197 (246)
                      .+.|+..+.||+++.|..+  .++.||+++.|++++.|.+++++|....   ... ..+++||++|+||+++.|.++++|
T Consensus       160 gvdI~p~A~IG~gv~Idh~--tGVVIGe~a~IGdnv~I~~~VtLGg~g~---~~~-~r~piIGd~V~IGagA~Ilggi~I  233 (294)
T PLN02694        160 AVDIHPAAKIGKGILFDHA--TGVVIGETAVIGNNVSILHHVTLGGTGK---ACG-DRHPKIGDGVLIGAGATILGNVKI  233 (294)
T ss_pred             eEEeCCcceecCCEEEeCC--CCeEECCCcEECCCCEEeecceeCCccc---ccC-CCccEECCCeEECCeeEECCCCEE
Confidence            5667777777777777653  3577777777777777777777765311   111 246899999999999999999999


Q ss_pred             CCCCEEccCcEEeccCCCCCeEEccCchhhHHH
Q 025890          198 ASKVRLAANSCVFKDITEPGDYGGFPAVPIHEW  230 (246)
Q Consensus       198 g~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~~  230 (246)
                      |+++.|+++++|++|+|+++++.|+|++.+...
T Consensus       234 Gd~a~IGAgSVV~kdVP~~~~v~G~PAkiv~~~  266 (294)
T PLN02694        234 GEGAKIGAGSVVLIDVPPRTTAVGNPARLVGGK  266 (294)
T ss_pred             CCCCEECCCCEECCcCCCCcEEEccCcEEEccC
Confidence            999999999999999999999999999988753

>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.62  E-value=3.5e-14  Score=109.45  Aligned_cols=57  Identities=16%  Similarity=0.162  Sum_probs=43.3

Q ss_pred             cEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEcc-CcEEeccCCC
Q 025890          159 VAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA-NSCVFKDITE  215 (246)
Q Consensus       159 ~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~-~s~v~~~~~~  215 (246)
                      +.|++++.++.++.+..++.|+++++|+.++.+.+++.++++++++. .+.+.+++++
T Consensus        90 ~~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~~~i~~~~vv~g~pa~~i~~~~~  147 (161)
T cd03359          90 AQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPDTVIPPYSVVSGRPARFIGELPE  147 (161)
T ss_pred             eEEcCCcEECCCCEEcCCCEECCCcEECCCCEECCCCEeCCCCEEeccccEEEEecch
Confidence            44445555555555556778888899999999999999999999876 7888888876

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional

Probab=99.62  E-value=1.7e-14  Score=118.75  Aligned_cols=67  Identities=16%  Similarity=0.085  Sum_probs=43.7

Q ss_pred             CeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEec
Q 025890          140 DTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFK  211 (246)
Q Consensus       140 ~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~  211 (246)
                      ++.|+++|.++.++.+..++.||+++.++.++.+..++.|.+..   .++++.+.  |++++++.+++...+
T Consensus       176 ~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~gt~I~~~~---~g~v~~g~--vp~~svvv~g~~~~~  242 (272)
T PRK11830        176 PVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQSTKIYDRE---TGEVHYGR--VPAGSVVVPGSLPSK  242 (272)
T ss_pred             CeEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcCCeEECcCC---CCcEEeee--cCCCcEEecCccccc
Confidence            45666666666666666677777777776666666666666652   44555433  778888887877665

>TIGR01172 cysE serine O-acetyltransferase

Probab=99.61  E-value=1.1e-14  Score=112.29  Aligned_cols=81  Identities=30%  Similarity=0.455  Sum_probs=60.0

Q ss_pred             eEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEE
Q 025890          141 TVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYG  220 (246)
Q Consensus       141 ~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~  220 (246)
                      +.|++++.+++++.|++++.|+....-..    ....+||++|+|+.++.+.++++||+++.|+++|+|.+|+|+++++.
T Consensus        82 ~~Ig~~~~IG~~~~I~~~v~ig~~~~~~~----~~~~~Ig~~v~Ig~~a~I~~~v~IG~~~~Iga~s~V~~dvp~~~~~~  157 (162)
T TIGR01172        82 VVIGETAVIGDDVTIYHGVTLGGTGKEKG----KRHPTVGEGVMIGAGAKVLGNIEVGENAKIGANSVVLKDVPPGATVV  157 (162)
T ss_pred             EEECCCCEECCCCEEcCCCEECCCccccC----CcCCEECCCcEEcCCCEEECCcEECCCCEECCCCEECCCCCCCCEEE
Confidence            34444444444444444444443211000    23479999999999999999999999999999999999999999999


Q ss_pred             ccCch
Q 025890          221 GFPAV  225 (246)
Q Consensus       221 g~p~~  225 (246)
                      |+|||
T Consensus       158 G~Par  162 (162)
T TIGR01172       158 GVPAR  162 (162)
T ss_pred             eecCC
Confidence            99986

Cysteine biosynthesis

>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]

Probab=99.61  E-value=1.2e-15  Score=118.75  Aligned_cols=90  Identities=30%  Similarity=0.384  Sum_probs=71.3

Q ss_pred             CeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeE
Q 025890          140 DTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDY  219 (246)
Q Consensus       140 ~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~  219 (246)
                      +++||+-..+++++.+.|++.+|.--   .++.-+ +-+|||++|||++++|.+++.||.+++|++||+|.||+|++++.
T Consensus       168 gvvigeTAvvg~~vSilH~Vtlggtg---k~~gdr-hP~Igd~vliGaGvtILgnV~IGegavIaAGsvV~kDVP~~~~A  243 (269)
T KOG4750|consen  168 GVVIGETAVVGDNVSILHPVTLGGTG---KGSGDR-HPKIGDNVLIGAGVTILGNVTIGEGAVIAAGSVVLKDVPPNTLA  243 (269)
T ss_pred             ceeecceeEeccceeeecceeecccc---cccccc-CCcccCCeEEccccEEeCCeeECCCcEEeccceEEeccCCCcee
Confidence            45666666666666666777776422   122222 34999999999999999999999999999999999999999999


Q ss_pred             EccCchhhHHHHHH
Q 025890          220 GGFPAVPIHEWRRQ  233 (246)
Q Consensus       220 ~g~p~~~~~~~~~~  233 (246)
                      .|+|||.++...+.
T Consensus       244 vGnPAklIg~~~e~  257 (269)
T KOG4750|consen  244 VGNPAKLIGKIDEK  257 (269)
T ss_pred             cCCchhhccccccc
Confidence            99999999866543

>PRK10191 putative acyl transferase; Provisional

Probab=99.60  E-value=8.7e-15  Score=110.13  Aligned_cols=103  Identities=24%  Similarity=0.284  Sum_probs=81.8

Q ss_pred             ceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEE
Q 025890          118 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI  197 (246)
Q Consensus       118 ~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~i  197 (246)
                      .+.|...+.+++++.|..+  ..+.++.++.+++++.+++++.||++...     ..+.++|||+|+||+++.+.+++.|
T Consensus        41 g~~I~~~a~Ig~~~~I~~g--~~i~I~~~~~IGd~~~I~h~v~IG~~~~~-----~~~~~~IGd~~~Ig~~~~I~~~v~I  113 (146)
T PRK10191         41 GYEIQAAATIGRRFTIHHG--YAVVINKNVVAGDDFTIRHGVTIGNRGAD-----NMACPHIGNGVELGANVIILGDITI  113 (146)
T ss_pred             CcccCCCCEECCCeEECCC--CeEEECCCcEECCCCEECCCCEECCCCcC-----CCCCCEECCCcEEcCCCEEeCCCEE
Confidence            4556666666666666543  34677777777777777777777766432     1245799999999999999999999


Q ss_pred             CCCCEEccCcEEeccCCCCCeEEccCchhh
Q 025890          198 ASKVRLAANSCVFKDITEPGDYGGFPAVPI  227 (246)
Q Consensus       198 g~~~~v~~~s~v~~~~~~~~~~~g~p~~~~  227 (246)
                      ++++++++++++.+|+|+++++.|.||+.+
T Consensus       114 G~~~~Igags~V~~dv~~~~~v~G~pA~~~  143 (146)
T PRK10191        114 GNNVTVGAGSVVLDSVPDNALVVGEKARVK  143 (146)
T ss_pred             CCCCEECCCCEECCccCCCcEEEccCcEEE
Confidence            999999999999999999999999999754

>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]

Probab=99.60  E-value=5.5e-15  Score=113.67  Aligned_cols=105  Identities=30%  Similarity=0.434  Sum_probs=85.5

Q ss_pred             ceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEE
Q 025890          118 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI  197 (246)
Q Consensus       118 ~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~i  197 (246)
                      .+.|...+.||++..|..+  .+++||+.+.+++++.|.++++||..-.-.+    ..+-+||+++.||+++.|..+.+|
T Consensus        67 gieIhp~A~IG~g~fIdHg--~GvVIgeta~IGddv~I~~gVTLGgtg~~~g----~RhPtIg~~V~IGagAkILG~I~I  140 (194)
T COG1045          67 GIEIHPGAKIGRGLFIDHG--TGVVIGETAVIGDDVTIYHGVTLGGTGKESG----KRHPTIGNGVYIGAGAKILGNIEI  140 (194)
T ss_pred             ceeeCCCCeECCceEEcCC--ceEEEcceeEECCCeEEEcceEecCCCCcCC----CCCCccCCCeEECCCCEEEcceEE
Confidence            5566666666666666655  4677888888888778878888875433222    346799999999999999999999


Q ss_pred             CCCCEEccCcEEeccCCCCCeEEccCchhhH
Q 025890          198 ASKVRLAANSCVFKDITEPGDYGGFPAVPIH  228 (246)
Q Consensus       198 g~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~  228 (246)
                      |+++.|+++|+|.+|+|+++++.|.||+.+.
T Consensus       141 Gd~akIGA~sVVlkdVP~~~tvvGvPArii~  171 (194)
T COG1045         141 GDNAKIGAGSVVLKDVPPNATVVGVPARVIG  171 (194)
T ss_pred             CCCCEECCCceEccCCCCCceEecCcceEec
Confidence            9999999999999999999999999999986

>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function

Probab=99.59  E-value=3.5e-14  Score=132.07  Aligned_cols=59  Identities=20%  Similarity=0.127  Sum_probs=52.3

Q ss_pred             eeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEec--cCCCCCeEEccCchhhHH
Q 025890          171 VGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFK--DITEPGDYGGFPAVPIHE  229 (246)
Q Consensus       171 ~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~--~~~~~~~~~g~p~~~~~~  229 (246)
                      .+..+.++||++++||.++++.+|++|++++.++..|.+.+  .+++++.+.|+|+..+..
T Consensus       396 ~l~~~~i~IG~~afVGn~~vv~pG~~ig~~~llg~~S~~p~~~~~~~g~~w~GSPa~~l~~  456 (695)
T TIGR02353       396 WFRLGRTRIGRRSFLGNSGYYPPGAKTGDNVLLGVLSMTPKDGKVREGVGWLGSPPFELPR  456 (695)
T ss_pred             eEEEeeEEECCCcEEcCceeECCCCEeCCCCEEeecccCCCCccCCCCCEEeCCCCeeCCc
Confidence            34445699999999999999999999999999999999987  588889999999977663

This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.

>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others

Probab=99.59  E-value=2.4e-14  Score=108.12  Aligned_cols=58  Identities=29%  Similarity=0.327  Sum_probs=54.8

Q ss_pred             ecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhhHHHH
Q 025890          174 AGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWR  231 (246)
Q Consensus       174 ~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~~~  231 (246)
                      ..+++||++|+||.++.+.+++.|+++++|+++|+|++++|+++++.|+||+.++.+.
T Consensus        71 ~~~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~~~v~~~~v~~G~Pa~~i~~~~  128 (145)
T cd03349          71 KGDVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVTKDVPPYAIVGGNPAKVIRYRF  128 (145)
T ss_pred             cCCcEECCCCEECCCCEEeCCCEECCCCEECCCCEEccccCCCeEEEecCCEeehhhC
Confidence            4579999999999999999999999999999999999999999999999999998764

Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.

>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH

Probab=99.56  E-value=6.7e-14  Score=103.77  Aligned_cols=87  Identities=14%  Similarity=0.232  Sum_probs=65.3

Q ss_pred             eEECCCcEECcccEEcCCCccCeEECCCCEEC----CCCEEccCcEECCCcEEccceeEecc----eEECCCeEECcCcE
Q 025890          119 ARIGNHVEIGANSCIDRGSWRDTVIGDHSKID----NLVQIGHNVAIGKSCMLCGQVGIAGS----ATIGDYVTLGGRVA  190 (246)
Q Consensus       119 ~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~----~~~~i~~~~~Ig~~~~i~~~~~~~~~----~~Ig~~~~Ig~~~~  190 (246)
                      +.||+++.|.+++.+..    ++.+|+++.+.    .++.|+++|.|++++.+.  +.+.++    ++||++|+||.+++
T Consensus        14 a~IG~GtvI~~gavV~~----~a~IG~~~iIn~~ig~~a~Ighd~~IG~~~~I~--~~l~G~~~~pV~IG~~~~IG~ga~   87 (147)
T cd04649          14 AYLAEGTTVMHEGFVNF----NAGTLGNCMVEGRISSGVIVGKGSDVGGGASIM--GTLSGGGNNVISIGKRCLLGANSG   87 (147)
T ss_pred             CEECCCcEECCCCEEcc----CCEECCCeEECCcccCCEEECCCCEECCCCEEE--EECCCCcccCEEECCCCEECCCCE
Confidence            34444444444444443    25555555555    778888888888888888  556666    99999999999999


Q ss_pred             ECCCcEECCCCEEccCcEEeccC
Q 025890          191 VRDHVSIASKVRLAANSCVFKDI  213 (246)
Q Consensus       191 v~~~~~ig~~~~v~~~s~v~~~~  213 (246)
                      |  ++.||++++|+++++|+|.-
T Consensus        88 I--gv~IG~~~vIGaGsvV~k~t  108 (147)
T cd04649          88 I--GISLGDNCIVEAGLYVTAGT  108 (147)
T ss_pred             E--eEEECCCCEECCCCEEeCCe
Confidence            9  79999999999999998753

THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.

>PLN02357 serine acetyltransferase

Probab=99.55  E-value=4.2e-14  Score=119.62  Aligned_cols=107  Identities=28%  Similarity=0.389  Sum_probs=84.8

Q ss_pred             ceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEE
Q 025890          118 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI  197 (246)
Q Consensus       118 ~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~i  197 (246)
                      .+.|+.++.||.++.|...  .++.||+++.|++++.|.++++||....-..    ..+++||++|+||+++.|.++++|
T Consensus       226 ~vdI~p~a~IG~Gv~Idh~--~giVIGe~avIGdnV~I~~gVtIGg~g~~~g----~~~piIGd~V~IGagA~IlggV~I  299 (360)
T PLN02357        226 AVDIHPGAKIGQGILLDHA--TGVVIGETAVVGNNVSILHNVTLGGTGKQSG----DRHPKIGDGVLIGAGTCILGNITI  299 (360)
T ss_pred             ceeeCCCCEECCCeEECCC--CceEECCCCEECCCCEEeCCceecCccccCC----ccCceeCCCeEECCceEEECCeEE
Confidence            4567777777777777643  3467777777777777777777765321111    235899999999999999999999


Q ss_pred             CCCCEEccCcEEeccCCCCCeEEccCchhhHHH
Q 025890          198 ASKVRLAANSCVFKDITEPGDYGGFPAVPIHEW  230 (246)
Q Consensus       198 g~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~~  230 (246)
                      |+++.|+++++|.+|+|+++++.|+||+.+...
T Consensus       300 Gdga~IGAgSVV~~dVP~~~~v~G~PArvv~~~  332 (360)
T PLN02357        300 GEGAKIGAGSVVLKDVPPRTTAVGNPARLIGGK  332 (360)
T ss_pred             CCCCEECCCCEECcccCCCcEEECCCeEEEccC
Confidence            999999999999999999999999999988754

>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family

Probab=99.54  E-value=2.5e-13  Score=108.35  Aligned_cols=150  Identities=17%  Similarity=0.177  Sum_probs=89.4

Q ss_pred             ECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeEEcCCCc
Q 025890           30 IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGN  109 (246)
Q Consensus        30 i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~  109 (246)
                      +++++.|+++|.|. ++.|++++.|+++|.|. +++||++++|+.++.+.++.||++|.|++++.|....-.        
T Consensus         5 ~~~~~~I~~~a~i~-~~~IG~~~~Ig~~a~I~-~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h~--------   74 (204)
T TIGR03308         5 LSPEPTLHPTAELT-ESKLGRYTEIGERTRLR-EVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATNHP--------   74 (204)
T ss_pred             cCCCCeECCCcEEe-ccEeCCCcEECCCcEEe-CCEECCCCEECCCcEEeeeEECCCCEECCCCEECCCCCC--------
Confidence            34555666666664 46777777777777775 677888888888888877888888888888877631100        


Q ss_pred             eeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCc
Q 025890          110 MLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRV  189 (246)
Q Consensus       110 ~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~  189 (246)
                                  -++....+.+......+...  .+..... .-....++.||++++++.++.+..+++||+++.|++++
T Consensus        75 ------------~~~~s~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs  139 (204)
T TIGR03308        75 ------------MERPTLHHFTYRAAMYFDDA--SDDADFF-AWRRAKRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGA  139 (204)
T ss_pred             ------------CCcccccccccccccccccc--ccccccc-ccccCCCeEECCCCEECCCCEECCCCEECCCCEECCCC
Confidence                        00000000000000000000  0000000 00123567777777777777778888999999999999


Q ss_pred             EECCCcEECCCCEEccC
Q 025890          190 AVRDHVSIASKVRLAAN  206 (246)
Q Consensus       190 ~v~~~~~ig~~~~v~~~  206 (246)
                      +|.++  ++++++++..
T Consensus       140 ~v~~~--i~~~~~~~G~  154 (204)
T TIGR03308       140 VVTKD--VAPYTIVAGV  154 (204)
T ss_pred             EECCC--CCCCcEEEec
Confidence            99876  6677766443

This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.

>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine

Probab=99.52  E-value=2.9e-13  Score=96.10  Aligned_cols=99  Identities=29%  Similarity=0.437  Sum_probs=71.6

Q ss_pred             eEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEEC
Q 025890          119 ARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIA  198 (246)
Q Consensus       119 ~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig  198 (246)
                      +.|++++.|++++.+...  ..+.+++++.+++++.+..++.|+.++.+    ....++.|+++|+|+.++.+.++++|+
T Consensus         3 ~~i~~~~~ig~~~~i~~~--~~~~ig~~~~Ig~~~~i~~~~~i~~~~~~----~~~~~~~Ig~~~~Ig~~~~i~~~~~Ig   76 (101)
T cd03354           3 IDIHPGAKIGPGLFIDHG--TGIVIGETAVIGDNCTIYQGVTLGGKGKG----GGKRHPTIGDNVVIGAGAKILGNITIG   76 (101)
T ss_pred             eEeCCCCEECCCEEECCC--CeEEECCCCEECCCCEEcCCCEECCCccC----CcCCCCEECCCcEEcCCCEEECcCEEC
Confidence            445555555555555432  23445555555555555555555555432    135668999999999999999999999


Q ss_pred             CCCEEccCcEEeccCCCCCeEEccC
Q 025890          199 SKVRLAANSCVFKDITEPGDYGGFP  223 (246)
Q Consensus       199 ~~~~v~~~s~v~~~~~~~~~~~g~p  223 (246)
                      +++++++++.+.+++|+++++.|+|
T Consensus        77 ~~~~i~~~~~i~~~~~~~~~~~G~P  101 (101)
T cd03354          77 DNVKIGANAVVTKDVPANSTVVGVP  101 (101)
T ss_pred             CCCEECCCCEECcccCCCCEEEeCC
Confidence            9999999999999999999999998

This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.

>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins

Probab=99.50  E-value=3.3e-13  Score=97.02  Aligned_cols=56  Identities=30%  Similarity=0.343  Sum_probs=51.5

Q ss_pred             eEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhh
Q 025890          172 GIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI  227 (246)
Q Consensus       172 ~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~  227 (246)
                      ....++.||++|+|+.++.+.+++.|++++.+++++.+.+++|+++++.|.||+.+
T Consensus        54 ~~~~~~~Ig~~~~ig~~~~i~~~~~ig~~~~i~~~~~v~~~i~~~~i~~g~pa~~~  109 (109)
T cd04647          54 VTSAPIVIGDDVWIGANVVILPGVTIGDGAVVGAGSVVTKDVPPNSIVAGNPAKVI  109 (109)
T ss_pred             cccCCeEECCCCEECCCCEEcCCCEECCCCEECCCCEEeeECCCCCEEEccccEeC
Confidence            44567999999999999999999999999999999999999999999999999864

MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.

>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

Probab=99.45  E-value=3.4e-12  Score=100.83  Aligned_cols=52  Identities=19%  Similarity=0.273  Sum_probs=34.1

Q ss_pred             CCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEc
Q 025890          151 NLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLA  204 (246)
Q Consensus       151 ~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~  204 (246)
                      .++.+.+++.||++|+++.++.+..+++|++++.++++++|.++  +++++++.
T Consensus       143 ~~~~i~~~~~ig~~~~ig~~~~v~~~~~ig~~~~v~~~~~v~~~--~~~~~~~~  194 (197)
T cd03360         143 PGVVLSGGVTIGEGAFIGAGATIIQGVTIGAGAIIGAGAVVTKD--VPDGSVVV  194 (197)
T ss_pred             CCCEEcCCcEECCCCEECCCCEEcCCCEECCCCEECCCCEEcCC--CCCCCEEE
Confidence            33344445555666666666666667888888888888888876  44555543

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.

>PLN02296 carbonate dehydratase

Probab=99.45  E-value=6.5e-12  Score=103.88  Aligned_cols=76  Identities=16%  Similarity=0.250  Sum_probs=56.6

Q ss_pred             eEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEE-ccCcEEeccCCCCC
Q 025890          141 TVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL-AANSCVFKDITEPG  217 (246)
Q Consensus       141 ~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v-~~~s~v~~~~~~~~  217 (246)
                      +.||+++.|+.++.+ +++.|+++|+|+.++.+..+++|+++|.|+++++|.++++|++++++ +..+.+.+++++..
T Consensus       120 siIG~~v~IG~~avI-~g~~Igd~v~IG~ga~I~~gv~Ig~~a~IgagSvV~~~~~I~~~~~~~G~PA~~ir~~~~~~  196 (269)
T PLN02296        120 TIIGDNVTIGHSAVL-HGCTVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQNTRIPSGEVWAGNPAKFLRKLTEEE  196 (269)
T ss_pred             cEeCCCCEECCCcee-cCCEECCCcEECCCcEECCCeEECCCCEECCCCEEecCCEeCCCeEEeccCcEEeCCCCHHH
Confidence            333444444444444 45677777777777777888999999999999999999999999975 66677878887654

>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]

Probab=99.45  E-value=2.3e-13  Score=120.42  Aligned_cols=109  Identities=27%  Similarity=0.407  Sum_probs=85.6

Q ss_pred             CcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeEEcC
Q 025890           27 SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDE  106 (246)
Q Consensus        27 ~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~  106 (246)
                      +.+-++.+.+.+.+.++.++.||..+.||.++.|. |++||.+|.||.|+.|.+++|+.+|+|+++|.|+          
T Consensus       315 ~IYk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~-NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~----------  383 (673)
T KOG1461|consen  315 NIYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKIS-NSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRID----------  383 (673)
T ss_pred             ccccCccceehhhccccceEEecccccccCCCeee-cceecCCCEecCceEEeeeeeecCcEECCCceEe----------
Confidence            34556777777778888888888888888888884 8888999999999999999999999999999987          


Q ss_pred             CCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEE
Q 025890          107 HGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAI  161 (246)
Q Consensus       107 ~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~I  161 (246)
                                 +++|++++.|++++++.++    ++++.++.++.+..+..++.+
T Consensus       384 -----------~aii~d~v~i~~~~~l~~g----~vl~~~VVv~~~~~l~~ns~~  423 (673)
T KOG1461|consen  384 -----------HAIICDDVKIGEGAILKPG----SVLGFGVVVGRNFVLPKNSKV  423 (673)
T ss_pred             -----------eeEeecCcEeCCCcccCCC----cEEeeeeEeCCCccccccccc
Confidence                       8888888888888888754    566666666665555555444

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=99.44  E-value=3.7e-12  Score=101.30  Aligned_cols=56  Identities=21%  Similarity=0.262  Sum_probs=34.4

Q ss_pred             CEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEc
Q 025890          147 SKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLA  204 (246)
Q Consensus       147 ~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~  204 (246)
                      +.++.++.+..++.++++++++.++.+..+++|+++|+|++++++.++  +++++++.
T Consensus       142 ~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~i~~~~~i~~~~~v~~~--~~~~~~~~  197 (201)
T TIGR03570       142 VHIAPGVTLSGGVVIGEGVFIGAGATIIQGVTIGAGAIVGAGAVVTKD--IPDGGVVV  197 (201)
T ss_pred             CEECCCCEEeCCcEECCCCEECCCCEEeCCCEECCCCEECCCCEECCc--CCCCCEEE
Confidence            333333444445555555555566666667788888888888888765  55655443

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]

Probab=99.43  E-value=6.8e-13  Score=106.77  Aligned_cols=37  Identities=24%  Similarity=0.361  Sum_probs=18.7

Q ss_pred             eEECCCeEECcCcEECCCcEECCCC--EEccCcEE-eccCC
Q 025890          177 ATIGDYVTLGGRVAVRDHVSIASKV--RLAANSCV-FKDIT  214 (246)
Q Consensus       177 ~~Ig~~~~Ig~~~~v~~~~~ig~~~--~v~~~s~v-~~~~~  214 (246)
                      +.+||+|.|.++++|.++++|..-.  .+ +++++ .+++|
T Consensus       201 V~vGdg~VV~aGv~I~~~tki~~~~~g~~-~~svv~~~~lp  240 (271)
T COG2171         201 VIVGDGCVVAAGVFITQDTKIYDRVAGRV-AGSVVVAGTLP  240 (271)
T ss_pred             eEeCCCcEEecceEEeCCcceEEeecccc-ccceEeecccC
Confidence            4555555555566666665554421  22 44443 34566

>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.43  E-value=1.6e-12  Score=113.64  Aligned_cols=127  Identities=22%  Similarity=0.177  Sum_probs=72.0

Q ss_pred             EEeechhhhhhhcccCCCc-------eeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECC---CcEECCCCEEC
Q 025890            4 YVSDIESRQQFQKWHNGGG-------IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGP---AVTIGQSTNIG   73 (246)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~-------~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~---~~~ig~~~~I~   73 (246)
                      ||.++++.+.+.+......       .+++...+...+.+...+.|++++.| .++.|+++|.|.+   +++|+++|.|+
T Consensus       240 ~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~Ig~~~~I~~~v~~s~ig~~~~I~  318 (380)
T PRK05293        240 YWKDVGTIESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAKV-KNSLVVEGCVVYGTVEHSVLFQGVQVG  318 (380)
T ss_pred             EEEeCCCHHHHHHHHHHHcCCCchhhhcCCCCceecCCcCCCCCEECCCCEE-ecCEECCCCEEcceecceEEcCCCEEC
Confidence            7999999999876543111       11122222233333333444444444 2344444444432   46677777777


Q ss_pred             CceEEeccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCC
Q 025890           74 FNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNL  152 (246)
Q Consensus        74 ~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~  152 (246)
                      ++|.|.++.|++++.|++++.|.                     +++|++++.|++++.+..+...+..+|+++.+.+.
T Consensus       319 ~~~~i~~svi~~~~~i~~~~~i~---------------------~~ii~~~~~i~~~~~i~~~~~~~~~ig~~~~~~~~  376 (380)
T PRK05293        319 EGSVVKDSVIMPGAKIGENVVIE---------------------RAIIGENAVIGDGVIIGGGKEVITVIGENEVIGVG  376 (380)
T ss_pred             CCCEEECCEEeCCCEECCCeEEe---------------------EEEECCCCEECCCCEEcCCCceeEEEeCCCCCCCC
Confidence            77777777777777777777775                     67777777777777666554333444444444443

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

Probab=99.42  E-value=1.6e-12  Score=112.38  Aligned_cols=104  Identities=31%  Similarity=0.468  Sum_probs=78.0

Q ss_pred             EEeechhhhhhhcccCCCceec---cCcEECCCc-EEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEe
Q 025890            4 YVSDIESRQQFQKWHNGGGIFH---QSACIDSTV-LIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS   79 (246)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~i~---~~~~i~~~~-~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~   79 (246)
                      ||.|+++++.+.+.......-.   ....+...+ .+.. +.|.++++|++++.|++++.|+++++||++|.|++++.|.
T Consensus       217 ~W~dig~p~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~  295 (358)
T COG1208         217 YWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRS-AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIK  295 (358)
T ss_pred             eEEeCCCHHHHHHHHHHHHhccccccccccccccccccc-ceEeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEE
Confidence            8999999999876665322111   111111111 1445 7888888999999999999999999999999999999999


Q ss_pred             ccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECc
Q 025890           80 NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGA  129 (246)
Q Consensus        80 ~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~  129 (246)
                      +|.|.++|.|++++.|.                     +++|++++.|++
T Consensus       296 ~Sii~~~~~i~~~~~i~---------------------~sIi~~~~~ig~  324 (358)
T COG1208         296 NSIIMDNVVIGHGSYIG---------------------DSIIGENCKIGA  324 (358)
T ss_pred             eeEEEcCCEECCCCEEe---------------------eeEEcCCcEECC
Confidence            99999999999999886                     677777777765

>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

Probab=99.42  E-value=3.9e-12  Score=92.92  Aligned_cols=19  Identities=32%  Similarity=0.581  Sum_probs=8.9

Q ss_pred             cceEECCCeEECcCcEECC
Q 025890          175 GSATIGDYVTLGGRVAVRD  193 (246)
Q Consensus       175 ~~~~Ig~~~~Ig~~~~v~~  193 (246)
                      .+++|++++.|++++++.+
T Consensus        84 ~~~~ig~~~~i~~~~~v~~  102 (119)
T cd03358          84 PGVTIGEYALVGAGAVVTK  102 (119)
T ss_pred             CCcEECCCCEEccCCEEeC
Confidence            3344444444445555444

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.

>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH

Probab=99.41  E-value=9.6e-12  Score=92.35  Aligned_cols=38  Identities=26%  Similarity=0.558  Sum_probs=25.5

Q ss_pred             cEECCCcEEccceeEecceEECCCeEECcCcEECCCcEEC
Q 025890          159 VAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIA  198 (246)
Q Consensus       159 ~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig  198 (246)
                      +.||++|+|+.++.+  ++.||++|.||++++|.++++|-
T Consensus        74 V~IG~~~~IG~ga~I--gv~IG~~~vIGaGsvV~k~t~i~  111 (147)
T cd04649          74 ISIGKRCLLGANSGI--GISLGDNCIVEAGLYVTAGTKVT  111 (147)
T ss_pred             EEECCCCEECCCCEE--eEEECCCCEECCCCEEeCCeEEE
Confidence            444444444444444  37888889988888888887763

THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.

>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.40  E-value=5.1e-12  Score=104.36  Aligned_cols=86  Identities=16%  Similarity=0.312  Sum_probs=64.4

Q ss_pred             ceEECCCcEECcccEEcCCCccCeE-ECCCCE---ECCCCEEccCcEECCCcEEccceeEecc----eEECCCeEECcCc
Q 025890          118 NARIGNHVEIGANSCIDRGSWRDTV-IGDHSK---IDNLVQIGHNVAIGKSCMLCGQVGIAGS----ATIGDYVTLGGRV  189 (246)
Q Consensus       118 ~~~Ig~~~~ig~~~~i~~~~~~~~~-ig~~~~---v~~~~~i~~~~~Ig~~~~i~~~~~~~~~----~~Ig~~~~Ig~~~  189 (246)
                      .+.||+++.|.+++.|+.    ++. +|+.+.   +..++.|+++|.||+++.|  ...+.++    +.||++|+||.++
T Consensus       190 gA~LGeGT~IM~~a~Vn~----nAgtiG~~~IEgrInsGavIGhds~IG~gasI--g~tLsGg~~~~V~IGe~~lIGagA  263 (341)
T TIGR03536       190 GAYVGEGTTVMHEGFINF----NAGTEGPSMVEGRISAGVMVGKGSDLGGGCST--MGTLSGGGNIVISVGEGCLLGANA  263 (341)
T ss_pred             CcEECCCCEEecCCEECc----CcEecCCceEecccccCCEECCCCEECCCCEE--eEEEeCCCceeEEECCCcEECCCC
Confidence            455555555555555553    233 566666   6667788888888888888  4466777    9999999999999


Q ss_pred             EECCCcEECCCCEEccCcEEec
Q 025890          190 AVRDHVSIASKVRLAANSCVFK  211 (246)
Q Consensus       190 ~v~~~~~ig~~~~v~~~s~v~~  211 (246)
                      .|  ++.||++++|++|++|+.
T Consensus       264 ~I--GI~IGd~~iIGAGavVta  283 (341)
T TIGR03536       264 GI--GIPLGDRCTVEAGLYITA  283 (341)
T ss_pred             EE--eeEECCCCEECCCCEEeC
Confidence            99  999999999999998863

2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.

>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.39  E-value=8.3e-12  Score=103.13  Aligned_cols=39  Identities=23%  Similarity=0.549  Sum_probs=27.3

Q ss_pred             cEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECC
Q 025890          159 VAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIAS  199 (246)
Q Consensus       159 ~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~  199 (246)
                      +.||++|+++.++.+  ++.||++|.|+++++|.++++|.-
T Consensus       251 V~IGe~~lIGagA~I--GI~IGd~~iIGAGavVtagTkI~~  289 (341)
T TIGR03536       251 ISVGEGCLLGANAGI--GIPLGDRCTVEAGLYITAGTKVAV  289 (341)
T ss_pred             EEECCCcEECCCCEE--eeEECCCCEECCCCEEeCCcEEEE
Confidence            444555555555554  588899999999988888888743

2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.

>PLN02241 glucose-1-phosphate adenylyltransferase

Probab=99.39  E-value=3.1e-12  Score=113.77  Aligned_cols=169  Identities=15%  Similarity=0.160  Sum_probs=96.7

Q ss_pred             EEeechhhhhhhcccCCCceecc-CcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccE
Q 025890            4 YVSDIESRQQFQKWHNGGGIFHQ-SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCI   82 (246)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~i~~-~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~   82 (246)
                      ||.|+++.+.|.+.......-.+ .....+...|.......++      +.+ .++.+.+ +.|+++|.|+ ++.|.++.
T Consensus       263 yw~dIg~~~~y~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~------~~~-~~~~i~~-s~I~~~~~I~-~~~I~~sv  333 (436)
T PLN02241        263 YWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYTSPRFLPP------SKI-EDCRITD-SIISHGCFLR-ECKIEHSV  333 (436)
T ss_pred             EEEECCCHHHHHHHHHHHhcCCchhhccCCCCcccccCCCCCC------cEe-cCCeEEE-eEEcCCcEEc-CeEEEeeE
Confidence            89999999998766653221111 1122222222222222222      333 3444443 6667777777 77777778


Q ss_pred             ECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECccc---EEcCCCccCeEECCCCEECCCCEEccCc
Q 025890           83 IGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANS---CIDRGSWRDTVIGDHSKIDNLVQIGHNV  159 (246)
Q Consensus        83 Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~---~i~~~~~~~~~ig~~~~v~~~~~i~~~~  159 (246)
                      |+++|.|+++|.|..                    .+++|.+ ....+.   .+......++.|++++.+. ++.+++++
T Consensus       334 I~~~~~Ig~~~~I~~--------------------sii~g~~-~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~vI~~~v  391 (436)
T PLN02241        334 VGLRSRIGEGVEIED--------------------TVMMGAD-YYETEEEIASLLAEGKVPIGIGENTKIR-NAIIDKNA  391 (436)
T ss_pred             EcCCCEECCCCEEEE--------------------eEEECCC-ccccccccccccccCCcceEECCCCEEc-ceEecCCC
Confidence            888888888887762                    3333422 111111   1110000013566666665 57778888


Q ss_pred             EECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcE
Q 025890          160 AIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSC  208 (246)
Q Consensus       160 ~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~  208 (246)
                      +||+++.+.....+.+..++|++|.++++.     +.|++++.++++|+
T Consensus       392 ~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~  435 (436)
T PLN02241        392 RIGKNVVIINKDGVQEADREEEGYYIRSGI-----VVILKNAVIPDGTV  435 (436)
T ss_pred             EECCCcEEecccccCCccccccccEEeCCE-----EEEcCCcEeCCCCC
Confidence            888888888777778888888888888774     45555666666554

>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]

Probab=99.37  E-value=2.6e-12  Score=113.83  Aligned_cols=93  Identities=33%  Similarity=0.491  Sum_probs=75.3

Q ss_pred             cCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECC
Q 025890           44 SKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGN  123 (246)
Q Consensus        44 ~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~  123 (246)
                      .+.+-++++.+.+.|.++.++.||.++.|+.++.|.++.||.+|.||.+++|.                     +++|++
T Consensus       314 ~~IYk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~---------------------~S~iw~  372 (673)
T KOG1461|consen  314 RNIYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIK---------------------NSFIWN  372 (673)
T ss_pred             cccccCccceehhhccccceEEecccccccCCCeeecceecCCCEecCceEEe---------------------eeeeec
Confidence            34566788888888999999999999999999999999999999999999997                     899999


Q ss_pred             CcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEEC
Q 025890          124 HVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIG  162 (246)
Q Consensus       124 ~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig  162 (246)
                      +|.|+.||.|..     +.|++++.++.++.+.+++.|+
T Consensus       373 ~v~Igdnc~I~~-----aii~d~v~i~~~~~l~~g~vl~  406 (673)
T KOG1461|consen  373 NVTIGDNCRIDH-----AIICDDVKIGEGAILKPGSVLG  406 (673)
T ss_pred             CcEECCCceEee-----eEeecCcEeCCCcccCCCcEEe
Confidence            999999999973     4555555555544444444444

>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.34  E-value=1.3e-11  Score=101.40  Aligned_cols=86  Identities=16%  Similarity=0.312  Sum_probs=71.4

Q ss_pred             ceEECCCcEECcccEEcCCCccCe-EECCCCEECCCCEEccCcEECCCcEEcccee----Eecc----eEECCCeEECcC
Q 025890          118 NARIGNHVEIGANSCIDRGSWRDT-VIGDHSKIDNLVQIGHNVAIGKSCMLCGQVG----IAGS----ATIGDYVTLGGR  188 (246)
Q Consensus       118 ~~~Ig~~~~ig~~~~i~~~~~~~~-~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~----~~~~----~~Ig~~~~Ig~~  188 (246)
                      .+.||+++.|.+.+.|..+    + .+|+. .+  ++.|+++|.||+++.|++++.    +.++    +.||++|+||.+
T Consensus       165 GAyLGeGtvVm~~a~VN~n----AgtIG~~-iI--~g~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe~~~IGag  237 (319)
T TIGR03535       165 GAHLAEGTTVMHEGFVNFN----AGTLGAS-MV--EGRISAGVVVGDGSDIGGGASIMGTLSGGGKEVISIGERCLLGAN  237 (319)
T ss_pred             ccEECCCCEEcCCCEEccC----ceEecCc-eE--EEEEccCCEECCCCEECCCceecceecCCCcccEEECCCcEECCC
Confidence            5667777777777777743    5 57775 55  578899999999999999998    5557    999999999999


Q ss_pred             cEECCCcEECCCCEEccCcEEecc
Q 025890          189 VAVRDHVSIASKVRLAANSCVFKD  212 (246)
Q Consensus       189 ~~v~~~~~ig~~~~v~~~s~v~~~  212 (246)
                      +.|  ++.||++|+|++|++|++.
T Consensus       238 A~I--GI~IGd~~VVGAGaVVtkg  259 (319)
T TIGR03535       238 SGL--GISLGDDCVVEAGLYVTAG  259 (319)
T ss_pred             CEE--CeEECCCCEECCCCEEeCC
Confidence            999  9999999999999999864

Alternate name: tetrahydrodipicolinate N-succinyltransferase.

>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional

Probab=99.33  E-value=5.7e-11  Score=94.11  Aligned_cols=58  Identities=19%  Similarity=0.296  Sum_probs=45.9

Q ss_pred             cCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEE-ccCcEEeccCCCC
Q 025890          157 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL-AANSCVFKDITEP  216 (246)
Q Consensus       157 ~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v-~~~s~v~~~~~~~  216 (246)
                      ..+.||++++++.++.+.++++||++|+|+++++|.++  +++++++ +..+.+.+...+.
T Consensus       129 ~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v~~~--i~~~~~~~G~Pa~~ik~~~~~  187 (192)
T PRK09677        129 SAVVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTKS--IPENTVIAGNPAKIIKKYNHE  187 (192)
T ss_pred             CCeEEcCCcEECCCCEEcCCCEECCCCEECCCCEECcc--cCCCcEEEecCCEEEeccCcc
Confidence            56778888888888888889999999999999999985  6777765 4556666666543

>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=99.31  E-value=4.9e-11  Score=84.48  Aligned_cols=85  Identities=20%  Similarity=0.303  Sum_probs=67.8

Q ss_pred             CcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeEEcC
Q 025890           27 SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDE  106 (246)
Q Consensus        27 ~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~  106 (246)
                      ..++++++.|++++.+.++++|+++++|++++.|++++.|+++|.|+.  .|.++.|++++.+.+++.|+          
T Consensus        11 ~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg----------   78 (101)
T cd05635          11 PIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLG----------   78 (101)
T ss_pred             CEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEe----------
Confidence            466777777777777877788888888888888888888888888865  46778888888888888886          


Q ss_pred             CCceeecCcccceEECCCcEECcccEEc
Q 025890          107 HGNMLKKPQLLNARIGNHVEIGANSCID  134 (246)
Q Consensus       107 ~~~~~~~~~~~~~~Ig~~~~ig~~~~i~  134 (246)
                                 +++||+++.|++++...
T Consensus        79 -----------~siIg~~v~ig~~~~~~   95 (101)
T cd05635          79 -----------HSYLGSWCNLGAGTNNS   95 (101)
T ss_pred             -----------eeEECCCCEECCCceec
Confidence                       78888888888887765

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK10092 maltose O-acetyltransferase; Provisional

Probab=99.29  E-value=6.6e-11  Score=92.77  Aligned_cols=51  Identities=27%  Similarity=0.478  Sum_probs=38.6

Q ss_pred             EEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccC
Q 025890          154 QIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN  206 (246)
Q Consensus       154 ~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~  206 (246)
                      .+...+.||++++|+.++.+..+++||++|+|+++++|.++  ++++++++..
T Consensus       125 ~~~~~v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~~d--i~~~~i~~G~  175 (183)
T PRK10092        125 ELGKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKD--VPDNVVVGGN  175 (183)
T ss_pred             eecCCeEECCCcEECCCCEECCCCEECCCCEECCCCEEccc--cCCCcEEEec
Confidence            34456677777777777777788999999999999999886  5677766543

>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.28  E-value=5.8e-11  Score=80.74  Aligned_cols=64  Identities=23%  Similarity=0.391  Sum_probs=40.6

Q ss_pred             CCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEEC
Q 025890           31 DSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG   96 (246)
Q Consensus        31 ~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~   96 (246)
                      ++++.|++++.|. ++.|++++.|+++|.|. +++|++++.|++++.|.++.+++++.|++++.+.
T Consensus         3 g~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~-~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~   66 (81)
T cd04652           3 GENTQVGEKTSIK-RSVIGANCKIGKRVKIT-NCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLK   66 (81)
T ss_pred             cCCCEECCCCEEe-CcEECCCCEECCCCEEe-CcEEeCCCEECCCCEEeccEEeCCCEECCCCEEc
Confidence            4455555555554 35566666666666664 3666667777777777777777777777777764

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>PRK09527 lacA galactoside O-acetyltransferase; Reviewed

Probab=99.28  E-value=6.2e-11  Score=94.16  Aligned_cols=56  Identities=27%  Similarity=0.389  Sum_probs=42.7

Q ss_pred             ccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccC-cEEeccC
Q 025890          156 GHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN-SCVFKDI  213 (246)
Q Consensus       156 ~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~-s~v~~~~  213 (246)
                      .+.+.||++++|+.++.+..+++||++|+|+++++|.++  ++++++++.. +.+.+.+
T Consensus       129 ~~pi~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~kd--vp~~~v~~G~PAk~i~~~  185 (203)
T PRK09527        129 SFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVTKD--IPPNVVAAGVPCRVIREI  185 (203)
T ss_pred             cCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEccc--CCCCcEEEeeCCEEeccC
Confidence            456778888888888888889999999999999999986  5677766433 4444444

>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates

Probab=99.27  E-value=8.6e-11  Score=91.26  Aligned_cols=51  Identities=29%  Similarity=0.416  Sum_probs=41.5

Q ss_pred             EEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccC
Q 025890          154 QIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN  206 (246)
Q Consensus       154 ~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~  206 (246)
                      ...+++.||++|+|+.++.+.++++||++|+||++++|.++  +++++++...
T Consensus       114 ~~~~~v~IG~~~~Ig~~a~I~~gv~Ig~~~~VgagavV~~~--vp~~~vv~G~  164 (169)
T cd03357         114 EYAKPITIGDNVWIGGGVIILPGVTIGDNSVIGAGSVVTKD--IPANVVAAGN  164 (169)
T ss_pred             eecCCcEeCCCEEECCCCEEeCCCEECCCCEECCCCEEccc--cCCCcEEEcc
Confidence            44577888888888888888899999999999999999986  6677765443

MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>PRK10502 putative acyl transferase; Provisional

Probab=99.26  E-value=1.1e-10  Score=91.63  Aligned_cols=49  Identities=27%  Similarity=0.411  Sum_probs=37.2

Q ss_pred             ccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccC
Q 025890          156 GHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN  206 (246)
Q Consensus       156 ~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~  206 (246)
                      ...+.||++++|+.++.+..+++||+++.|++++++.++  ++++++++..
T Consensus       122 ~~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~vIga~svV~~~--v~~~~v~~G~  170 (182)
T PRK10502        122 TAPIVIGEGCWLAADVFVAPGVTIGSGAVVGARSSVFKS--LPANTICRGN  170 (182)
T ss_pred             cCCEEEcCCcEEcCCCEEcCCCEECCCCEECCCCEEecc--cCCCcEEECC
Confidence            355677777777777777788899999999999998875  6677766544

>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.25  E-value=1.6e-10  Score=95.12  Aligned_cols=38  Identities=21%  Similarity=0.523  Sum_probs=26.1

Q ss_pred             cEECCCcEEccceeEecceEECCCeEECcCcEECCCcEEC
Q 025890          159 VAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIA  198 (246)
Q Consensus       159 ~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig  198 (246)
                      +.||++|+|+.++.+  ++.||++|.||++++|.++++|.
T Consensus       226 V~IGe~~~IGagA~I--GI~IGd~~VVGAGaVVtkgT~v~  263 (319)
T TIGR03535       226 ISIGERCLLGANSGL--GISLGDDCVVEAGLYVTAGTKVT  263 (319)
T ss_pred             EEECCCcEECCCCEE--CeEECCCCEECCCCEEeCCeEEE
Confidence            444444444444444  47888899999998888888774

Alternate name: tetrahydrodipicolinate N-succinyltransferase.

>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form

Probab=99.25  E-value=6.2e-11  Score=102.70  Aligned_cols=16  Identities=6%  Similarity=0.117  Sum_probs=12.3

Q ss_pred             EEeechhhhhhhcccC
Q 025890            4 YVSDIESRQQFQKWHN   19 (246)
Q Consensus         4 ~~~~~~~~~~~~~~~~   19 (246)
                      ||.++++++.+.+...
T Consensus       217 ~w~digt~~dl~~a~~  232 (353)
T TIGR01208       217 WWKDTGKPEDLLDANR  232 (353)
T ss_pred             EEEeCCCHHHHHHHHH
Confidence            7999999988765444

Alternate name: dTDP-D-glucose synthase

>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase

Probab=99.24  E-value=1.1e-10  Score=79.24  Aligned_cols=64  Identities=19%  Similarity=0.240  Sum_probs=33.1

Q ss_pred             CCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEEC
Q 025890           32 STVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG   96 (246)
Q Consensus        32 ~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~   96 (246)
                      +++.|++++.|++++.|+++++|+++|.|. ++++++++.|++++.|.++.+++++.+++++.+.
T Consensus         4 ~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~-~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~   67 (80)
T cd05824           4 PSAKIGKTAKIGPNVVIGPNVTIGDGVRLQ-RCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLE   67 (80)
T ss_pred             CCCEECCCCEECCCCEECCCCEECCCcEEe-eeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEe
Confidence            344444444444445555555555555553 4455555555555555555555555555555553

It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase

Probab=99.24  E-value=1.2e-10  Score=78.98  Aligned_cols=66  Identities=23%  Similarity=0.451  Sum_probs=51.0

Q ss_pred             CCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEEC
Q 025890           49 GANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIG  128 (246)
Q Consensus        49 ~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig  128 (246)
                      +++++|++++.|++++.|+++|.|++++.|.++.+++++.|++++.|.                     ++++++++.++
T Consensus         3 ~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~---------------------~sii~~~~~v~   61 (80)
T cd05824           3 DPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVK---------------------SSIVGWNSTVG   61 (80)
T ss_pred             CCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEe---------------------CCEEeCCCEEC
Confidence            445566666666666667777777778888888899999999999886                     78888888888


Q ss_pred             cccEEcC
Q 025890          129 ANSCIDR  135 (246)
Q Consensus       129 ~~~~i~~  135 (246)
                      +++.+..
T Consensus        62 ~~~~~~~   68 (80)
T cd05824          62 RWTRLEN   68 (80)
T ss_pred             CCcEEec
Confidence            8877763

It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]

Probab=99.23  E-value=1.6e-11  Score=89.18  Aligned_cols=96  Identities=20%  Similarity=0.378  Sum_probs=50.5

Q ss_pred             eccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccC
Q 025890           79 SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHN  158 (246)
Q Consensus        79 ~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~  158 (246)
                      .+..+|..|.++..++|.+..        ..+.+.+...+.-||++++|++.|++.+.           .+++.++++.+
T Consensus        53 AnVr~GryCV~ksrsvIRPp~--------K~FSKg~affp~hiGdhVFieE~cVVnAA-----------qIgsyVh~Gkn  113 (184)
T KOG3121|consen   53 ANVRIGRYCVLKSRSVIRPPM--------KIFSKGPAFFPVHIGDHVFIEEECVVNAA-----------QIGSYVHLGKN  113 (184)
T ss_pred             ccceEcceEEeccccccCCch--------HHhcCCceeeeeeecceEEEecceEeehh-----------hheeeeEeccc
Confidence            356677777777777776531        11222222336677888888877777652           22333333333


Q ss_pred             cEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEcc
Q 025890          159 VAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA  205 (246)
Q Consensus       159 ~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~  205 (246)
                      +.||+            .+++.|-|.|-.++++.+.+.+++++.+++
T Consensus       114 aviGr------------rCVlkdCc~ild~tVlPpet~vppy~~~~g  148 (184)
T KOG3121|consen  114 AVIGR------------RCVLKDCCRILDDTVLPPETLVPPYSTIGG  148 (184)
T ss_pred             eeEcC------------ceEhhhheeccCCcccCcccccCCceEEcC
Confidence            33333            334455555555555555555444444433

>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

Probab=99.23  E-value=1.3e-10  Score=78.59  Aligned_cols=32  Identities=31%  Similarity=0.463  Sum_probs=15.1

Q ss_pred             cEECCCCEECCceEEeccEECCCcEECCCeEE
Q 025890           64 VTIGQSTNIGFNVALSNCIIGDSCIIHNGVCI   95 (246)
Q Consensus        64 ~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i   95 (246)
                      +.|+++|+|++++.|.++.|++++.|++++.|
T Consensus        17 s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i   48 (79)
T cd03356          17 SVIGDNVRIGDGVTITNSILMDNVTIGANSVI   48 (79)
T ss_pred             CEECCCCEECCCCEEeCCEEeCCCEECCCCEE
Confidence            34444444444444444445555555555544

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.23  E-value=1.3e-10  Score=78.42  Aligned_cols=64  Identities=23%  Similarity=0.374  Sum_probs=32.3

Q ss_pred             CCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEEC
Q 025890           31 DSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG   96 (246)
Q Consensus        31 ~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~   96 (246)
                      ++++.|++++.|. ++.|++++.|++++.|. ++.++++++|++++.|.++.|++++.|++++.+.
T Consensus         3 g~~~~I~~~~~i~-~s~ig~~~~ig~~~~i~-~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~   66 (79)
T cd05787           3 GRGTSIGEGTTIK-NSVIGRNCKIGKNVVID-NSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIP   66 (79)
T ss_pred             cCCCEECCCCEEe-ccEECCCCEECCCCEEe-CcEEeCCCEECCCCEEeCcEEcCCCEECCCCEEC
Confidence            3444444444443 34455555555555553 4455555555555555555555555555555443

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

Probab=99.21  E-value=2e-10  Score=77.66  Aligned_cols=65  Identities=31%  Similarity=0.525  Sum_probs=54.8

Q ss_pred             ECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEEC
Q 025890           30 IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG   96 (246)
Q Consensus        30 i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~   96 (246)
                      +++++.|++++.|.+ +.|+++++|++++.|. +++|+++++|++++.|.++.+++++.|++++.+.
T Consensus         2 ig~~~~I~~~~~i~~-s~ig~~~~Ig~~~~i~-~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~   66 (79)
T cd03356           2 IGESTVIGENAIIKN-SVIGDNVRIGDGVTIT-NSILMDNVTIGANSVIVDSIIGDNAVIGENVRVV   66 (79)
T ss_pred             ccCCcEECCCCEEeC-CEECCCCEECCCCEEe-CCEEeCCCEECCCCEEECCEECCCCEECCCCEEc
Confidence            456677777777775 7888888888888886 6788999999999999999999999999998886

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.20  E-value=2.1e-10  Score=77.99  Aligned_cols=65  Identities=32%  Similarity=0.568  Sum_probs=44.3

Q ss_pred             ECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEE
Q 025890           48 LGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEI  127 (246)
Q Consensus        48 i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i  127 (246)
                      |++++.|++++.|. ++.|++++.|++++.|.++.+++++.|++++.|.                     ++.+++++.+
T Consensus         2 ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~---------------------~svi~~~~~i   59 (81)
T cd04652           2 VGENTQVGEKTSIK-RSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLE---------------------NCIIGNGAVI   59 (81)
T ss_pred             ccCCCEECCCCEEe-CcEECCCCEECCCCEEeCcEEeCCCEECCCCEEe---------------------ccEEeCCCEE
Confidence            34455555555554 4566666777777777777777888888888775                     6777777777


Q ss_pred             CcccEEc
Q 025890          128 GANSCID  134 (246)
Q Consensus       128 g~~~~i~  134 (246)
                      ++++.+.
T Consensus        60 ~~~~~v~   66 (81)
T cd04652          60 GEKCKLK   66 (81)
T ss_pred             CCCCEEc
Confidence            7777664

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.20  E-value=1.9e-10  Score=77.58  Aligned_cols=48  Identities=35%  Similarity=0.585  Sum_probs=30.7

Q ss_pred             ECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEEC
Q 025890           48 LGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG   96 (246)
Q Consensus        48 i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~   96 (246)
                      |+++++|++++.|. ++.|++++.|++++.|.++.+++++.|++++.|.
T Consensus         2 ig~~~~I~~~~~i~-~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~   49 (79)
T cd05787           2 IGRGTSIGEGTTIK-NSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIH   49 (79)
T ss_pred             ccCCCEECCCCEEe-ccEECCCCEECCCCEEeCcEEeCCCEECCCCEEe
Confidence            44555555555554 4566666666666666666777777777776664

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=99.16  E-value=1.1e-10  Score=99.45  Aligned_cols=112  Identities=17%  Similarity=0.157  Sum_probs=74.6

Q ss_pred             EEeechhhhhhhcccCCCceeccCc-EECCCcEEcCCcEECcCcEEC-----CCcEECCCCEECC---CcEECCCCEECC
Q 025890            4 YVSDIESRQQFQKWHNGGGIFHQSA-CIDSTVLIEVGAIVHSKAVLG-----ANVCIGSGTVVGP---AVTIGQSTNIGF   74 (246)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~i~~~~-~i~~~~~I~~~a~I~~~~~i~-----~~~~Ig~~~~i~~---~~~ig~~~~I~~   74 (246)
                      ||+|+++.++|.++..+.....+.. ..+++..|.......|++++.     .++.|+.||+|.+   +++|+.+++|++
T Consensus       243 Yw~dVgTi~syy~aNmdLl~~~~~~~lyd~~w~IyT~~~~~pPak~~~~s~v~nSLv~~GciI~G~V~nSVL~~~v~I~~  322 (393)
T COG0448         243 YWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFVNDSEVSNSLVAGGCIISGTVENSVLFRGVRIGK  322 (393)
T ss_pred             hhhhcccHHHHHHhhHHhcCCCCcccccCCCCceeecCCCCCCceEecCceEeeeeeeCCeEEEeEEEeeEEecCeEECC
Confidence            9999999999987777555433322 223333443333333444333     3456677777764   447777888888


Q ss_pred             ceEEeccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCC
Q 025890           75 NVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG  136 (246)
Q Consensus        75 ~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~  136 (246)
                      +|.|++|.|.++|.||++|.|.                     +++|.+++.|+++..|...
T Consensus       323 gs~i~~svim~~~~IG~~~~l~---------------------~aIIDk~v~I~~g~~i~~~  363 (393)
T COG0448         323 GSVIENSVIMPDVEIGEGAVLR---------------------RAIIDKNVVIGEGVVIGGD  363 (393)
T ss_pred             CCEEEeeEEeCCcEECCCCEEE---------------------EEEeCCCcEeCCCcEEcCC
Confidence            8888888888888888888885                     7778888777777777654

>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

Probab=99.12  E-value=8.4e-10  Score=78.66  Aligned_cols=79  Identities=18%  Similarity=0.194  Sum_probs=53.5

Q ss_pred             cEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeEEcCCCceeec
Q 025890           34 VLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKK  113 (246)
Q Consensus        34 ~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~  113 (246)
                      +.|++++.|. ++.|++++.|+ ++.|. ++.+++++.|++++.|.++.|++++.|++++.+.                 
T Consensus         2 ~~i~~~~~i~-~s~Ig~~~~I~-~~~I~-~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~-----------------   61 (104)
T cd04651           2 PYIGRRGEVK-NSLVSEGCIIS-GGTVE-NSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIR-----------------   61 (104)
T ss_pred             ceecCCCEEE-eEEECCCCEEc-CeEEE-eCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEE-----------------
Confidence            3455555553 45566666666 66663 5667777777777777777777777777777774                 


Q ss_pred             CcccceEECCCcEECcccEEcCC
Q 025890          114 PQLLNARIGNHVEIGANSCIDRG  136 (246)
Q Consensus       114 ~~~~~~~Ig~~~~ig~~~~i~~~  136 (246)
                          ++.|++++.+++++.+...
T Consensus        62 ----~siig~~~~Ig~~~~v~~~   80 (104)
T cd04651          62 ----RAIIDKNVVIPDGVVIGGD   80 (104)
T ss_pred             ----eEEECCCCEECCCCEECCC
Confidence                6777777777777766654

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.

>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=99.11  E-value=6e-10  Score=74.69  Aligned_cols=36  Identities=25%  Similarity=0.433  Sum_probs=32.1

Q ss_pred             cceEECCCeEECcCcEECCCcEECCCCEEccCcEEe
Q 025890          175 GSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVF  210 (246)
Q Consensus       175 ~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~  210 (246)
                      .++.|+++|+++.++++.+++.|++++.|++++.++
T Consensus        43 ~~~~ig~~~~v~~~~~i~~~~~ig~~~~i~~~s~v~   78 (78)
T cd00208          43 NPTIIGDNVEIGANAVIHGGVKIGDNAVIGAGAVVT   78 (78)
T ss_pred             CCcEECCCcEECCCCEEeCCCEECCCCEECcCcEeC
Confidence            348999999999999999999999999999998873

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.

>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E

Probab=99.11  E-value=1.3e-09  Score=78.18  Aligned_cols=48  Identities=21%  Similarity=0.311  Sum_probs=36.9

Q ss_pred             EccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEc
Q 025890          155 IGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLA  204 (246)
Q Consensus       155 i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~  204 (246)
                      +...+.||++|+++.++.+..+++|+++|.|++++++.++  +.+++++.
T Consensus        53 ~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~i~~gs~v~~~--~~~~~~~~  100 (107)
T cd05825          53 ITAPIVIGDGAWVAAEAFVGPGVTIGEGAVVGARSVVVRD--LPAWTVYA  100 (107)
T ss_pred             ecCCEEECCCCEECCCCEECCCCEECCCCEECCCCEEeCc--CCCCCEEE
Confidence            4466777888888888888888999999999999999875  45555543

coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.

>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]

Probab=99.10  E-value=1e-10  Score=96.66  Aligned_cols=120  Identities=21%  Similarity=0.305  Sum_probs=74.4

Q ss_pred             EEeechhhhhhhcccCCCceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEE
Q 025890            4 YVSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCII   83 (246)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~I   83 (246)
                      ||.|+++++.|+..+.   ...........-+.-+++.|..++.+.+-+.+|++|.|+++++||.+++|++++.|.++.+
T Consensus       226 fWmDIGqpkdf~~g~~---~Yl~s~~~~t~~r~~p~~~i~~nvlvd~~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~s~i  302 (371)
T KOG1322|consen  226 FWMDIGQPKDFLTGFS---FYLRSLPKYTSPRLLPGSKIVGNVLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTI  302 (371)
T ss_pred             hhhhcCCHHHHHHHHH---HHHhhCcccCCccccCCccccccEeeccccccCCccEECCCceECCCcEecCceEEEeeEE
Confidence            8999999999876644   1222222233333333344444444545556666667766777777777777777777777


Q ss_pred             CCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECC
Q 025890           84 GDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDN  151 (246)
Q Consensus        84 g~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~  151 (246)
                      -....+..++.+.                     .+.+|.++.||.+++|.    +.+++|+++.+.+
T Consensus       303 l~~~~~~~~s~i~---------------------s~ivg~~~~IG~~~~id----~~a~lG~nV~V~d  345 (371)
T KOG1322|consen  303 LGADYYETHSEIS---------------------SSIVGWNVPIGIWARID----KNAVLGKNVIVAD  345 (371)
T ss_pred             EccceechhHHHH---------------------hhhccccccccCceEEe----cccEeccceEEec
Confidence            7777777777775                     66777777777776555    2344444444433

>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.09  E-value=4.9e-10  Score=99.51  Aligned_cols=16  Identities=25%  Similarity=0.314  Sum_probs=13.5

Q ss_pred             EEeechhhhhhhcccC
Q 025890            4 YVSDIESRQQFQKWHN   19 (246)
Q Consensus         4 ~~~~~~~~~~~~~~~~   19 (246)
                      ||.|+++.+.|.+...
T Consensus       255 ~w~digt~~~y~~an~  270 (429)
T PRK02862        255 YWEDIGTIEAFYEANL  270 (429)
T ss_pred             EEEeCCCHHHHHHHHH
Confidence            7999999999887654

>PRK10191 putative acyl transferase; Provisional

Probab=99.09  E-value=6.8e-10  Score=83.63  Aligned_cols=86  Identities=27%  Similarity=0.337  Sum_probs=50.0

Q ss_pred             eeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCcee
Q 025890           23 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGF  102 (246)
Q Consensus        23 ~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~  102 (246)
                      .+++++.+++++.|+++    .++.|+++++||++|.|+.+++|++.....    ...+.||++|.|++++.+..     
T Consensus        43 ~I~~~a~Ig~~~~I~~g----~~i~I~~~~~IGd~~~I~h~v~IG~~~~~~----~~~~~IGd~~~Ig~~~~I~~-----  109 (146)
T PRK10191         43 EIQAAATIGRRFTIHHG----YAVVINKNVVAGDDFTIRHGVTIGNRGADN----MACPHIGNGVELGANVIILG-----  109 (146)
T ss_pred             ccCCCCEECCCeEECCC----CeEEECCCcEECCCCEECCCCEECCCCcCC----CCCCEECCCcEEcCCCEEeC-----
Confidence            34444444444444432    034444445555544444444444332111    13457888888888888864     


Q ss_pred             EEcCCCceeecCcccceEECCCcEECcccEEcCC
Q 025890          103 FVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG  136 (246)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~  136 (246)
                                     ++.||+++.+++++++...
T Consensus       110 ---------------~v~IG~~~~Igags~V~~d  128 (146)
T PRK10191        110 ---------------DITIGNNVTVGAGSVVLDS  128 (146)
T ss_pred             ---------------CCEECCCCEECCCCEECCc
Confidence                           7889999999999988853

>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.08  E-value=6.2e-10  Score=81.66  Aligned_cols=55  Identities=27%  Similarity=0.330  Sum_probs=29.3

Q ss_pred             cEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEEC
Q 025890           34 VLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG   96 (246)
Q Consensus        34 ~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~   96 (246)
                      +.|.+.|.+--.+.|.++++|+++|++++.+++=..+        .+.+||+++.|.+.+.|.
T Consensus         9 vkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~a--------GPI~iGEnniiEEyA~i~   63 (190)
T KOG4042|consen    9 VKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATA--------GPIYIGENNIIEEYAVIR   63 (190)
T ss_pred             eeecCceEEEEecccccceEecCCcEecceEEEEccc--------CCEEEccCchhhhHHHHH
Confidence            3444555554445555666666666666555442211        345566666666665554

>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.07  E-value=1.6e-09  Score=95.73  Aligned_cols=109  Identities=13%  Similarity=0.175  Sum_probs=66.9

Q ss_pred             EEeechhhhhhhcccCCCce------e-ccC------cEECCCcE-EcCC--cEECcCcEECCCcEECCCCEECCCcEEC
Q 025890            4 YVSDIESRQQFQKWHNGGGI------F-HQS------ACIDSTVL-IEVG--AIVHSKAVLGANVCIGSGTVVGPAVTIG   67 (246)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~------i-~~~------~~i~~~~~-I~~~--a~I~~~~~i~~~~~Ig~~~~i~~~~~ig   67 (246)
                      ||.|+++.+.|.+.......      + .+.      ....+++. ++..  +.+.+++.|++++.|+ ++.|. +++|+
T Consensus       258 ~w~Digt~~~y~~a~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~I~-~~~i~-~svIg  335 (407)
T PRK00844        258 YWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWPIYTSSPNLPPAKFVDGGGRVGSAQDSLVSAGSIIS-GATVR-NSVLS  335 (407)
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCccccCCCCCcccccCCCCCCceEecCCCccceEEeCEEcCCCEEC-CeeeE-cCEEC
Confidence            79999999998775432110      0 000      00111222 2221  1233456666666666 66665 47777


Q ss_pred             CCCEECCceEEeccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcC
Q 025890           68 QSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDR  135 (246)
Q Consensus        68 ~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~  135 (246)
                      ++|.|+++|.|.+++|+++|.|+++|.|.                     +++|++++.|++++++..
T Consensus       336 ~~~~I~~~~~i~~sii~~~~~i~~~~~i~---------------------~~ii~~~~~i~~~~~i~~  382 (407)
T PRK00844        336 PNVVVESGAEVEDSVLMDGVRIGRGAVVR---------------------RAILDKNVVVPPGATIGV  382 (407)
T ss_pred             CCCEECCCCEEeeeEECCCCEECCCCEEE---------------------eeEECCCCEECCCCEECC
Confidence            77777777777777788888888877775                     677777777777776653

>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine

Probab=99.07  E-value=1.9e-09  Score=76.44  Aligned_cols=62  Identities=35%  Similarity=0.493  Sum_probs=34.2

Q ss_pred             EECCCCEECCCcEECCCCEECCceE---EeccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECc
Q 025890           53 CIGSGTVVGPAVTIGQSTNIGFNVA---LSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGA  129 (246)
Q Consensus        53 ~Ig~~~~i~~~~~ig~~~~I~~~~~---I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~  129 (246)
                      .|++++.|++++.|+.++.|++++.   +..+.|+++|.|+.++.+..                    .+.||+++.+++
T Consensus        24 ~ig~~~~Ig~~~~i~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~--------------------~~~Ig~~~~i~~   83 (101)
T cd03354          24 VIGETAVIGDNCTIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILG--------------------NITIGDNVKIGA   83 (101)
T ss_pred             EECCCCEECCCCEEcCCCEECCCccCCcCCCCEECCCcEEcCCCEEEC--------------------cCEECCCCEECC
Confidence            3344444444444444444444443   45566667777766666653                    456666666666


Q ss_pred             ccEEc
Q 025890          130 NSCID  134 (246)
Q Consensus       130 ~~~i~  134 (246)
                      ++.+.
T Consensus        84 ~~~i~   88 (101)
T cd03354          84 NAVVT   88 (101)
T ss_pred             CCEEC
Confidence            66655

This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.

>TIGR01172 cysE serine O-acetyltransferase

Probab=99.05  E-value=4e-09  Score=81.28  Aligned_cols=47  Identities=13%  Similarity=0.367  Sum_probs=37.8

Q ss_pred             cCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEcc
Q 025890          157 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA  205 (246)
Q Consensus       157 ~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~  205 (246)
                      ....||++|+++.++.+.++++||++|+|+++++|.++  +++++++..
T Consensus       112 ~~~~Ig~~v~Ig~~a~I~~~v~IG~~~~Iga~s~V~~d--vp~~~~~~G  158 (162)
T TIGR01172       112 RHPTVGEGVMIGAGAKVLGNIEVGENAKIGANSVVLKD--VPPGATVVG  158 (162)
T ss_pred             cCCEECCCcEEcCCCEEECCcEECCCCEECCCCEECCC--CCCCCEEEe
Confidence            44677777778788888889999999999999999987  567776543

Cysteine biosynthesis

>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit

Probab=99.05  E-value=2e-09  Score=93.87  Aligned_cols=15  Identities=27%  Similarity=0.532  Sum_probs=12.7

Q ss_pred             EEeechhhhhhhccc
Q 025890            4 YVSDIESRQQFQKWH   18 (246)
Q Consensus         4 ~~~~~~~~~~~~~~~   18 (246)
                      ||.|+++++.|.+..
T Consensus       235 ~w~dIgt~~~l~~a~  249 (369)
T TIGR02092       235 YLANINSVKSYYKAN  249 (369)
T ss_pred             ceeEcCCHHHHHHHH
Confidence            799999999987665

This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.

>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=99.04  E-value=1.8e-09  Score=72.34  Aligned_cols=34  Identities=32%  Similarity=0.525  Sum_probs=21.4

Q ss_pred             ccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEE
Q 025890           80 NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCI  133 (246)
Q Consensus        80 ~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i  133 (246)
                      +..|+++|.++.++.+..                    ++.|++++.+++++.+
T Consensus        44 ~~~ig~~~~v~~~~~i~~--------------------~~~ig~~~~i~~~s~v   77 (78)
T cd00208          44 PTIIGDNVEIGANAVIHG--------------------GVKIGDNAVIGAGAVV   77 (78)
T ss_pred             CcEECCCcEECCCCEEeC--------------------CCEECCCCEECcCcEe
Confidence            356666666666666643                    5667777777666654

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.

>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

Probab=99.02  E-value=4.3e-09  Score=75.02  Aligned_cols=76  Identities=21%  Similarity=0.264  Sum_probs=52.6

Q ss_pred             cEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECccc
Q 025890           52 VCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANS  131 (246)
Q Consensus        52 ~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~  131 (246)
                      +.|++++.|. ++.||++|.|+ ++.|.++.+++++.|++++.|.                     ++.|++++.|++++
T Consensus         2 ~~i~~~~~i~-~s~Ig~~~~I~-~~~I~~svi~~~~~Ig~~~~I~---------------------~siI~~~~~Ig~~~   58 (104)
T cd04651           2 PYIGRRGEVK-NSLVSEGCIIS-GGTVENSVLFRGVRVGSGSVVE---------------------DSVIMPNVGIGRNA   58 (104)
T ss_pred             ceecCCCEEE-eEEECCCCEEc-CeEEEeCEEeCCCEECCCCEEE---------------------EeEEcCCCEECCCC
Confidence            3455555553 56677778887 7888888888888888888885                     77888888888887


Q ss_pred             EEcCCCccCeEECCCCEECCCCEE
Q 025890          132 CIDRGSWRDTVIGDHSKIDNLVQI  155 (246)
Q Consensus       132 ~i~~~~~~~~~ig~~~~v~~~~~i  155 (246)
                      .+.     ++.+++++.+++++.+
T Consensus        59 ~i~-----~siig~~~~Ig~~~~v   77 (104)
T cd04651          59 VIR-----RAIIDKNVVIPDGVVI   77 (104)
T ss_pred             EEE-----eEEECCCCEECCCCEE
Confidence            775     2455554444444444

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.

>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=99.02  E-value=4.2e-09  Score=74.58  Aligned_cols=81  Identities=21%  Similarity=0.262  Sum_probs=57.4

Q ss_pred             cccCCCceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEEC---CCcEECCCCEECCceEEeccEECCCcEECCC
Q 025890           16 KWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVG---PAVTIGQSTNIGFNVALSNCIIGDSCIIHNG   92 (246)
Q Consensus        16 ~~~~~~~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~---~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~   92 (246)
                      -++.....+.+++.+.+++.|++++.|++.+.|.+++.|+++|.|+   +++.|.+++.+.+++.|.++.||+++.|+++
T Consensus        12 v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~~i~~svi~~~~~i~~~~~lg~siIg~~v~ig~~   91 (101)
T cd05635          12 IYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGGEVEDSIIEGYSNKQHDGFLGHSYLGSWCNLGAG   91 (101)
T ss_pred             EEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECCEECccEEcCCCEecCcCEEeeeEECCCCEECCC
Confidence            3444556666666676777777777777777777777777777776   5667777777777777777788888888777


Q ss_pred             eEEC
Q 025890           93 VCIG   96 (246)
Q Consensus        93 ~~i~   96 (246)
                      +...
T Consensus        92 ~~~~   95 (101)
T cd05635          92 TNNS   95 (101)
T ss_pred             ceec
Confidence            7653

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PLN02739 serine acetyltransferase

Probab=99.02  E-value=5.5e-09  Score=88.18  Aligned_cols=106  Identities=21%  Similarity=0.260  Sum_probs=69.8

Q ss_pred             ccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCc
Q 025890           80 NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNV  159 (246)
Q Consensus        80 ~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~  159 (246)
                      ++-|+..+.||.++.|....                  .++||+++.||.++.|..+    +.+|....-    .-.++.
T Consensus       205 GidI~p~A~IG~Gv~IdHg~------------------GVVIG~~avIGdnv~I~~g----VTIGg~g~~----~g~r~p  258 (355)
T PLN02739        205 GIDIHPAARIGKGILLDHGT------------------GVVIGETAVIGDRVSILHG----VTLGGTGKE----TGDRHP  258 (355)
T ss_pred             CcccCCCccccCceEEecCC------------------ceEECCCCEECCCCEEcCC----ceeCCcCCc----CCCCCc
Confidence            34566666666666664311                  5666666666666655532    333322100    002467


Q ss_pred             EECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEc-cCcEEeccC
Q 025890          160 AIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLA-ANSCVFKDI  213 (246)
Q Consensus       160 ~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~-~~s~v~~~~  213 (246)
                      +||++++|+.++.+.++++||+++.||++++|.++  +++++++. ..+.+.+..
T Consensus       259 ~IGd~V~IGagA~IlG~V~IGd~aiIGAGSVV~kD--VP~~stvvG~PAriI~~~  311 (355)
T PLN02739        259 KIGDGALLGACVTILGNISIGAGAMVAAGSLVLKD--VPSHSMVAGNPAKLIGFV  311 (355)
T ss_pred             EECCCCEEcCCCEEeCCeEECCCCEECCCCEECCC--CCCCcEEEecCCEEeccC
Confidence            89999999999999999999999999999999986  66777654 345554433

>PRK11132 cysE serine acetyltransferase; Provisional

Probab=99.01  E-value=2.3e-09  Score=88.51  Aligned_cols=99  Identities=17%  Similarity=0.241  Sum_probs=68.8

Q ss_pred             eccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccC
Q 025890           79 SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHN  158 (246)
Q Consensus        79 ~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~  158 (246)
                      .++.|++.+.||+++.|+...                  .++||+++.||.++.|..    ++.+|....-   .. ..+
T Consensus       140 ~gidI~~~a~IG~g~~I~h~~------------------givIG~~a~IGdnv~I~~----~VtiGg~~~~---~~-~~~  193 (273)
T PRK11132        140 FQVDIHPAAKIGRGIMLDHAT------------------GIVIGETAVIENDVSILQ----SVTLGGTGKT---SG-DRH  193 (273)
T ss_pred             eeeEecCcceECCCeEEcCCC------------------CeEECCCCEECCCCEEcC----CcEEecCccc---CC-CcC
Confidence            455666777777777776421                  567777777777776653    2444432110   00 134


Q ss_pred             cEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEcc
Q 025890          159 VAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA  205 (246)
Q Consensus       159 ~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~  205 (246)
                      .+||++++|+.++.+.++++||++|.||++++|.++  |++++++..
T Consensus       194 p~IGd~V~IGaga~Ilggv~IG~~a~IGAgSvV~~d--Vp~~~~v~G  238 (273)
T PRK11132        194 PKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQP--VPPHTTAAG  238 (273)
T ss_pred             CEECCCcEEcCCCEEcCCCEECCCCEECCCCEECcc--cCCCcEEEe
Confidence            688888888888888999999999999999999986  777776643

>PLN02694 serine O-acetyltransferase

Probab=98.99  E-value=3.7e-09  Score=87.50  Aligned_cols=17  Identities=41%  Similarity=0.593  Sum_probs=7.6

Q ss_pred             ceEECCCcEECcccEEc
Q 025890          118 NARIGNHVEIGANSCID  134 (246)
Q Consensus       118 ~~~Ig~~~~ig~~~~i~  134 (246)
                      +.+||+++.|+++++|.
T Consensus       212 ~piIGd~V~IGagA~Il  228 (294)
T PLN02694        212 HPKIGDGVLIGAGATIL  228 (294)
T ss_pred             ccEECCCeEECCeeEEC
Confidence            34444444444444443

>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins

Probab=98.98  E-value=8.5e-09  Score=73.85  Aligned_cols=47  Identities=23%  Similarity=0.333  Sum_probs=31.2

Q ss_pred             ccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEc
Q 025890          156 GHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLA  204 (246)
Q Consensus       156 ~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~  204 (246)
                      ..++.||++++++.++.+..++.|+++|+++.++.+.+  .+++++++.
T Consensus        56 ~~~~~Ig~~~~ig~~~~i~~~~~ig~~~~i~~~~~v~~--~i~~~~i~~  102 (109)
T cd04647          56 SAPIVIGDDVWIGANVVILPGVTIGDGAVVGAGSVVTK--DVPPNSIVA  102 (109)
T ss_pred             cCCeEECCCCEECCCCEEcCCCEECCCCEECCCCEEee--ECCCCCEEE
Confidence            35566666666666666666777888888888877773  455665543

MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.

>TIGR02091 glgC glucose-1-phosphate adenylyltransferase

Probab=98.98  E-value=3.1e-09  Score=92.34  Aligned_cols=14  Identities=21%  Similarity=0.337  Sum_probs=11.8

Q ss_pred             EEeechhhhhhhcc
Q 025890            4 YVSDIESRQQFQKW   17 (246)
Q Consensus         4 ~~~~~~~~~~~~~~   17 (246)
                      ||.|+++.+.|.+.
T Consensus       240 ~w~digt~~~~~~a  253 (361)
T TIGR02091       240 YWRDVGTIDSFWEA  253 (361)
T ss_pred             EEEECCCHHHHHHH
Confidence            79999999987655

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.

>PLN02241 glucose-1-phosphate adenylyltransferase

Probab=98.96  E-value=6.4e-09  Score=92.62  Aligned_cols=48  Identities=10%  Similarity=0.259  Sum_probs=33.1

Q ss_pred             CCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEE
Q 025890           32 STVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCII   83 (246)
Q Consensus        32 ~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~I   83 (246)
                      +++.+ .++.|.+ +.|+++|+|+ +|.|. +++|+++|.|+++|.|.++++
T Consensus       304 ~~~~~-~~~~i~~-s~I~~~~~I~-~~~I~-~svI~~~~~Ig~~~~I~~sii  351 (436)
T PLN02241        304 PPSKI-EDCRITD-SIISHGCFLR-ECKIE-HSVVGLRSRIGEGVEIEDTVM  351 (436)
T ss_pred             CCcEe-cCCeEEE-eEEcCCcEEc-CeEEE-eeEEcCCCEECCCCEEEEeEE
Confidence            44444 3455554 6777778777 77774 578888888888888866665

>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]

Probab=98.96  E-value=1e-08  Score=82.84  Aligned_cols=39  Identities=23%  Similarity=0.307  Sum_probs=18.8

Q ss_pred             eEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCC
Q 025890          177 ATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITE  215 (246)
Q Consensus       177 ~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~  215 (246)
                      +.|||+|+||+++.+..|+.+|++|+|++|.+++++.|.
T Consensus       183 v~IgdncliGAns~~veGV~vGdg~VV~aGv~I~~~tki  221 (271)
T COG2171         183 VIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFITQDTKI  221 (271)
T ss_pred             eEECCccEeccccceEeeeEeCCCcEEecceEEeCCcce
Confidence            444444444444444444444444444444444444443

>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.95  E-value=6.1e-09  Score=92.43  Aligned_cols=16  Identities=13%  Similarity=0.221  Sum_probs=13.8

Q ss_pred             EEeechhhhhhhcccC
Q 025890            4 YVSDIESRQQFQKWHN   19 (246)
Q Consensus         4 ~~~~~~~~~~~~~~~~   19 (246)
                      ||.|+++.+.|.+...
T Consensus       269 yw~digt~~~y~~an~  284 (425)
T PRK00725        269 YWRDVGTLDAYWQANL  284 (425)
T ss_pred             eEEECCCHHHHHHHHH
Confidence            8999999999987654

>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form

Probab=98.95  E-value=9.1e-09  Score=89.20  Aligned_cols=14  Identities=43%  Similarity=0.536  Sum_probs=5.2

Q ss_pred             EECCCcEECCCeEE
Q 025890           82 IIGDSCIIHNGVCI   95 (246)
Q Consensus        82 ~Ig~~~~I~~~~~i   95 (246)
                      .|+++|.|+++|.|
T Consensus       284 ~i~~~~~Ig~~~~i  297 (353)
T TIGR01208       284 YIGPYTSIGEGVVI  297 (353)
T ss_pred             EECCCCEECCCCEE
Confidence            33333333333333

Alternate name: dTDP-D-glucose synthase

>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=5.9e-09  Score=85.26  Aligned_cols=68  Identities=24%  Similarity=0.347  Sum_probs=45.0

Q ss_pred             ECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEE
Q 025890           48 LGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEI  127 (246)
Q Consensus        48 i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i  127 (246)
                      |.+.+++.+.+.|++|+.||.+++||+++.|..++|-+++.|.+++++-                     +++||..+.|
T Consensus       291 IhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl---------------------~sIigw~s~i  349 (407)
T KOG1460|consen  291 IHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVL---------------------HSIIGWKSSI  349 (407)
T ss_pred             EcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEE---------------------eeeecccccc
Confidence            3333333333334444444555566666666777788888888887774                     8888998888


Q ss_pred             CcccEEcCC
Q 025890          128 GANSCIDRG  136 (246)
Q Consensus       128 g~~~~i~~~  136 (246)
                      |.++.++.-
T Consensus       350 GrWaRVe~~  358 (407)
T KOG1460|consen  350 GRWARVEGI  358 (407)
T ss_pred             cceeeeccc
Confidence            888888764

>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.93  E-value=1.1e-08  Score=89.54  Aligned_cols=16  Identities=19%  Similarity=0.370  Sum_probs=7.4

Q ss_pred             ceEECCCcEECcccEE
Q 025890          118 NARIGNHVEIGANSCI  133 (246)
Q Consensus       118 ~~~Ig~~~~ig~~~~i  133 (246)
                      +++||+++.|+++|.|
T Consensus       308 ~s~ig~~~~I~~~~~i  323 (380)
T PRK05293        308 HSVLFQGVQVGEGSVV  323 (380)
T ss_pred             ceEEcCCCEECCCCEE
Confidence            3444444444444444

>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=98.90  E-value=2.7e-09  Score=78.31  Aligned_cols=136  Identities=20%  Similarity=0.213  Sum_probs=72.7

Q ss_pred             cEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcE
Q 025890           81 CIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVA  160 (246)
Q Consensus        81 ~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~  160 (246)
                      .+|+++|.+++.+.+-.                 ..+.++||+++.|.++++|...      ..++..-..+-   ..-.
T Consensus        27 vti~~gcVvHP~a~~iA-----------------~aGPI~iGEnniiEEyA~i~n~------~~~~~~~d~~~---~pmi   80 (190)
T KOG4042|consen   27 VTIKEGCVVHPFAVFIA-----------------TAGPIYIGENNIIEEYAVIRNR------LEPGAVWDSDG---QPMI   80 (190)
T ss_pred             eEecCCcEecceEEEEc-----------------ccCCEEEccCchhhhHHHHHhh------cCCCCccCCCC---CeEE
Confidence            44456666666666543                 2348999999999999877641      11111111100   1223


Q ss_pred             ECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEe--ccCCCCCeEEccCc-------------h
Q 025890          161 IGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVF--KDITEPGDYGGFPA-------------V  225 (246)
Q Consensus       161 Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~--~~~~~~~~~~g~p~-------------~  225 (246)
                      ||.+.+..-++.... .++||+-.|+..+++.+++.+.++|+|++...+.  +++|++..++|...             -
T Consensus        81 IGt~NvFeVgc~s~A-~kvGd~NVieskayvg~gv~vssgC~vGA~c~v~~~q~lpent~vYga~~L~R~~~~~~~~qtl  159 (190)
T KOG4042|consen   81 IGTWNVFEVGCKSSA-KKVGDRNVIESKAYVGDGVSVSSGCSVGAKCTVFSHQNLPENTSVYGATNLSRTTKTPNMTQTL  159 (190)
T ss_pred             EeccceEEeechhhh-hhhcCcceEeeeeEecCCcEEcCCceeccceEEecccccCCcceEEccccccceecCCCCCccc
Confidence            333333333332222 4566666666666666666666666666665554  45666665554321             2


Q ss_pred             hhHHHHHHhhhhhhcccc
Q 025890          226 PIHEWRRQVANQIRSSKK  243 (246)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~  243 (246)
                      .+++|++.+++.-.|.++
T Consensus       160 QidFLrKiLPnYHHL~k~  177 (190)
T KOG4042|consen  160 QIDFLRKILPNYHHLYKK  177 (190)
T ss_pred             hHHHHHHHccchhhhhcc
Confidence            355666666666555543

>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others

Probab=98.89  E-value=4.4e-08  Score=73.98  Aligned_cols=49  Identities=20%  Similarity=0.269  Sum_probs=39.8

Q ss_pred             ccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccC
Q 025890          156 GHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN  206 (246)
Q Consensus       156 ~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~  206 (246)
                      ..++.||++|+++.++.+..+++||++|.|+++++|.++  ++++++++..
T Consensus        71 ~~~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~~~--v~~~~v~~G~  119 (145)
T cd03349          71 KGDVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVTKD--VPPYAIVGGN  119 (145)
T ss_pred             cCCcEECCCCEECCCCEEeCCCEECCCCEECCCCEEccc--cCCCeEEEec
Confidence            467788888888888888889999999999999999986  5677766544

Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.

>PLN02357 serine acetyltransferase

Probab=98.87  E-value=2.1e-08  Score=85.34  Aligned_cols=85  Identities=27%  Similarity=0.406  Sum_probs=48.8

Q ss_pred             EECCCcEEcCCcEECc--CcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeEEcC
Q 025890           29 CIDSTVLIEVGAIVHS--KAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDE  106 (246)
Q Consensus        29 ~i~~~~~I~~~a~I~~--~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~  106 (246)
                      .|.+++.||+++.|..  +++|+++++||++|.|..+++||..-   ...-...++||++|.|+.++.|..         
T Consensus       228 dI~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~g---~~~g~~~piIGd~V~IGagA~Ilg---------  295 (360)
T PLN02357        228 DIHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGTG---KQSGDRHPKIGDGVLIGAGTCILG---------  295 (360)
T ss_pred             eeCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCcc---ccCCccCceeCCCeEECCceEEEC---------
Confidence            3444444444444442  23444444444444444444443320   111123578888888888877753         


Q ss_pred             CCceeecCcccceEECCCcEECcccEEcCC
Q 025890          107 HGNMLKKPQLLNARIGNHVEIGANSCIDRG  136 (246)
Q Consensus       107 ~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~  136 (246)
                                 ++.||+++.|++++++...
T Consensus       296 -----------gV~IGdga~IGAgSVV~~d  314 (360)
T PLN02357        296 -----------NITIGEGAKIGAGSVVLKD  314 (360)
T ss_pred             -----------CeEECCCCEECCCCEECcc
Confidence                       7889999999999988853

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

Probab=98.86  E-value=3e-08  Score=85.94  Aligned_cols=29  Identities=28%  Similarity=0.476  Sum_probs=16.1

Q ss_pred             CcEECCCCEECCceEEeccEECCCcEECC
Q 025890           63 AVTIGQSTNIGFNVALSNCIIGDSCIIHN   91 (246)
Q Consensus        63 ~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~   91 (246)
                      +++|.++|.|++++.|.+++|+++|.|++
T Consensus       296 ~Sii~~~~~i~~~~~i~~sIi~~~~~ig~  324 (358)
T COG1208         296 NSIIMDNVVIGHGSYIGDSIIGENCKIGA  324 (358)
T ss_pred             eeEEEcCCEECCCCEEeeeEEcCCcEECC
Confidence            34445555555555555555555555555

>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]

Probab=98.83  E-value=9.1e-09  Score=86.88  Aligned_cols=73  Identities=32%  Similarity=0.535  Sum_probs=57.1

Q ss_pred             cEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccce
Q 025890           40 AIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNA  119 (246)
Q Consensus        40 a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  119 (246)
                      +.++..+.++++++|++++.|. .++||.+|.||+.++|.++.+.+++.|++++.|.                     ++
T Consensus       329 ~l~g~d~iv~~~t~i~~~s~ik-~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~Ie---------------------ns  386 (433)
T KOG1462|consen  329 ALVGADSIVGDNTQIGENSNIK-RSVIGSNCDIGERVKVANSILMDNVVVGDGVNIE---------------------NS  386 (433)
T ss_pred             eccchhhccCCCceecccceee-eeeecCCccccCCcEEEeeEeecCcEecCCccee---------------------cc
Confidence            4445555566666677666663 6788888888888888888888999999988886                     88


Q ss_pred             EECCCcEECcccEEc
Q 025890          120 RIGNHVEIGANSCID  134 (246)
Q Consensus       120 ~Ig~~~~ig~~~~i~  134 (246)
                      +||.++.|++++.+.
T Consensus       387 IIg~gA~Ig~gs~L~  401 (433)
T KOG1462|consen  387 IIGMGAQIGSGSKLK  401 (433)
T ss_pred             eecccceecCCCeee
Confidence            888888888888775

>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.81  E-value=3.1e-08  Score=88.09  Aligned_cols=37  Identities=8%  Similarity=0.248  Sum_probs=19.2

Q ss_pred             cEECCCcEECCCCEECCCcEECCCCEECCceEEeccEEC
Q 025890           46 AVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIG   84 (246)
Q Consensus        46 ~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig   84 (246)
                      +.|++++.| +++.|. +++|+++|.|++++.|.+++|+
T Consensus       309 ~~ig~~~~i-~~~~i~-~svi~~~~~Ig~~~~i~~svi~  345 (429)
T PRK02862        309 SIIAEGCII-KNCSIH-HSVLGIRSRIESGCTIEDTLVM  345 (429)
T ss_pred             CEECCCCEE-CCcEEE-EEEEeCCcEECCCCEEEeeEEe
Confidence            455555555 455553 3455555555555555555553

>COG4801 Predicted acyltransferase [General function prediction only]

Probab=98.80  E-value=2.4e-08  Score=78.68  Aligned_cols=103  Identities=17%  Similarity=0.249  Sum_probs=80.5

Q ss_pred             ceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEE
Q 025890          118 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI  197 (246)
Q Consensus       118 ~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~i  197 (246)
                      ..++++.+.+++++.|..                 ..++.++.|+.+|.+.+++...++++||+++.|.+..++..+..+
T Consensus        33 ~~V~g~~iivge~v~i~G-----------------diva~diridmw~kv~gNV~ve~dayiGE~~sI~gkl~v~gdLdi   95 (277)
T COG4801          33 YGVVGEEIIVGERVRIYG-----------------DIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKGKLTVIGDLDI   95 (277)
T ss_pred             eeeeeeeEEeccCcEEee-----------------eEEecceeeeeeeEeeccEEEcCceEEeccceeeeeEEEeccccc
Confidence            445556666666655553                 244578888888888888888899999999999999999999999


Q ss_pred             CCCCEEccCcEEeccCCCCCeEEccCchhhHHHHHHhhhhhhccc
Q 025890          198 ASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRSSK  242 (246)
Q Consensus       198 g~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~  242 (246)
                      |+++.|..+ ++    ..++++..||...+..+.-+...+.++.+
T Consensus        96 g~dV~Iegg-fv----a~g~Ivirnpvpvl~fl~lyl~vllrlGr  135 (277)
T COG4801          96 GADVIIEGG-FV----AKGWIVIRNPVPVLEFLFLYLSVLLRLGR  135 (277)
T ss_pred             ccceEEecC-ee----ecceEEEcCCccEEEEEhhHHHHHHhccc
Confidence            999988766 33    24667889999998888888888888764

>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]

Probab=98.77  E-value=1.1e-07  Score=73.64  Aligned_cols=52  Identities=21%  Similarity=0.313  Sum_probs=37.5

Q ss_pred             cCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEE
Q 025890          157 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCV  209 (246)
Q Consensus       157 ~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v  209 (246)
                      .+-+||+++.|+.++.+.++++|||++.||+|++|.+++.- .-++++-.+.+
T Consensus       118 RhPtIg~~V~IGagAkILG~I~IGd~akIGA~sVVlkdVP~-~~tvvGvPAri  169 (194)
T COG1045         118 RHPTIGNGVYIGAGAKILGNIEIGDNAKIGAGSVVLKDVPP-NATVVGVPARV  169 (194)
T ss_pred             CCCccCCCeEECCCCEEEcceEECCCCEECCCceEccCCCC-CceEecCcceE
Confidence            44566777777777777889999999999999999999653 22233444433

>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]

Probab=98.76  E-value=2.1e-08  Score=73.12  Aligned_cols=64  Identities=31%  Similarity=0.412  Sum_probs=40.1

Q ss_pred             CcEECCCCEECCCcEECCCCEE-CCceEEeccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECc
Q 025890           51 NVCIGSGTVVGPAVTIGQSTNI-GFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGA  129 (246)
Q Consensus        51 ~~~Ig~~~~i~~~~~ig~~~~I-~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~  129 (246)
                      +++||..|++..+++|.+.-.+ ..+...-+..||++++|+++|++.                     .+.||.++.+|.
T Consensus        54 nVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVn---------------------AAqIgsyVh~Gk  112 (184)
T KOG3121|consen   54 NVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVN---------------------AAQIGSYVHLGK  112 (184)
T ss_pred             cceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEee---------------------hhhheeeeEecc
Confidence            3444444444444444332211 222223467899999999999996                     678888888888


Q ss_pred             ccEEcC
Q 025890          130 NSCIDR  135 (246)
Q Consensus       130 ~~~i~~  135 (246)
                      +++|++
T Consensus       113 naviGr  118 (184)
T KOG3121|consen  113 NAVIGR  118 (184)
T ss_pred             ceeEcC
Confidence            876653

>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]

Probab=98.70  E-value=6.4e-08  Score=81.86  Aligned_cols=84  Identities=26%  Similarity=0.482  Sum_probs=53.0

Q ss_pred             CEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCC
Q 025890           58 TVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGS  137 (246)
Q Consensus        58 ~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~  137 (246)
                      ..++..++++++|.|++++.|..++||.+|.||+.+.+.                     ++.+=+++.++.++.|+   
T Consensus       329 ~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~---------------------nSilm~nV~vg~G~~Ie---  384 (433)
T KOG1462|consen  329 ALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVA---------------------NSILMDNVVVGDGVNIE---  384 (433)
T ss_pred             eccchhhccCCCceecccceeeeeeecCCccccCCcEEE---------------------eeEeecCcEecCCccee---
Confidence            334445555666666666677777777777777777775                     66667777777777665   


Q ss_pred             ccCeEECCCCEECCCCEEccCcEECCCcEEc
Q 025890          138 WRDTVIGDHSKIDNLVQIGHNVAIGKSCMLC  168 (246)
Q Consensus       138 ~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~  168 (246)
                        ++.||.++.|++++.+ .+|.||.+-++.
T Consensus       385 --nsIIg~gA~Ig~gs~L-~nC~Ig~~yvVe  412 (433)
T KOG1462|consen  385 --NSIIGMGAQIGSGSKL-KNCIIGPGYVVE  412 (433)
T ss_pred             --cceecccceecCCCee-eeeEecCCcEEc
Confidence              4566666666665555 555555444443

>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.69  E-value=1.3e-07  Score=83.59  Aligned_cols=69  Identities=26%  Similarity=0.446  Sum_probs=59.6

Q ss_pred             cCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECC
Q 025890           26 QSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQ   97 (246)
Q Consensus        26 ~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~   97 (246)
                      +++.+++++.|+ ++.|. ++.|+++|+|+++|.|. +++|+++|.|+++|.|.+++|++++.|++++.++.
T Consensus       314 ~~~~ig~~~~I~-~~~i~-~svIg~~~~I~~~~~i~-~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~  382 (407)
T PRK00844        314 QDSLVSAGSIIS-GATVR-NSVLSPNVVVESGAEVE-DSVLMDGVRIGRGAVVRRAILDKNVVVPPGATIGV  382 (407)
T ss_pred             EeCEEcCCCEEC-CeeeE-cCEECCCCEECCCCEEe-eeEECCCCEECCCCEEEeeEECCCCEECCCCEECC
Confidence            456777777777 77776 48889999999999996 78899999999999999999999999999999975

>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=1.1e-07  Score=77.91  Aligned_cols=71  Identities=21%  Similarity=0.222  Sum_probs=52.3

Q ss_pred             CcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCC
Q 025890           27 SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQD   98 (246)
Q Consensus        27 ~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~   98 (246)
                      +++|.+.+++.+.|.|+||+.|+++++||+|+.+. .++|-+++.|.+|+.+-+++||-++.||..+.+...
T Consensus       288 dVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~-~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~  358 (407)
T KOG1460|consen  288 DVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLR-ESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGI  358 (407)
T ss_pred             eeEEcCcceeCCccccCCCceecCCceecCCceee-eeeeccCcEeeccceEEeeeecccccccceeeeccc
Confidence            45555555555556666666666666666666664 456678899999999999999999999999999754

>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]

Probab=98.64  E-value=2.7e-07  Score=72.89  Aligned_cols=87  Identities=24%  Similarity=0.277  Sum_probs=55.7

Q ss_pred             ceEECCCcEECcccEEcCCCccCeEECCCCEECCC-CEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcE
Q 025890          118 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNL-VQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVS  196 (246)
Q Consensus       118 ~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~-~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~  196 (246)
                      ...||+++.+++++.+....+    ..+....... ......+.||++++|+.++++..+++||++++||+++++.++  
T Consensus        87 ~i~ig~~~~i~~~v~i~~~~h----~~~~~~~~~~~~~~~~~v~IG~~vwIG~~a~IlpGV~IG~gavigagsVVtkd--  160 (190)
T COG0110          87 GITIGDNVVVGPNVTIYTNSH----PGDFVTANIGALVGAGPVTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVVTKD--  160 (190)
T ss_pred             CeEECCCceECCCcEEecCCC----CCChhhcccCCceecCCeEECCCeEEcCccEECCCEEECCCcEEeeCCEEeCc--
Confidence            455666666666666654311    1111111111 233356888888888888888999999999999999999995  


Q ss_pred             ECCCCEEccC-cEEe
Q 025890          197 IASKVRLAAN-SCVF  210 (246)
Q Consensus       197 ig~~~~v~~~-s~v~  210 (246)
                      ++++++++.. +.+.
T Consensus       161 vp~~~iv~G~Pa~vi  175 (190)
T COG0110         161 VPPYGIVAGNPARVI  175 (190)
T ss_pred             cCCCeEEeCCcceEE
Confidence            5677765443 4444

>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.55  E-value=6.5e-07  Score=79.58  Aligned_cols=70  Identities=11%  Similarity=0.138  Sum_probs=56.6

Q ss_pred             CcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCC
Q 025890           45 KAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNH  124 (246)
Q Consensus        45 ~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~  124 (246)
                      +++|+++|.| ++|.|. +++|+++|.|+++|.|.+++|+++|.|+++|.|.                     +++|+++
T Consensus       327 ~s~i~~~~~i-~~~~i~-~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~---------------------~~ii~~~  383 (425)
T PRK00725        327 NSLVSGGCII-SGAVVR-RSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLR---------------------RCVIDRG  383 (425)
T ss_pred             eCEEcCCcEE-cCcccc-CCEECCCCEECCCCEEeeeEEcCCCEECCCCEEe---------------------eEEECCC
Confidence            5677777777 677775 6888888888888888888888888888888885                     7888888


Q ss_pred             cEECcccEEcCCC
Q 025890          125 VEIGANSCIDRGS  137 (246)
Q Consensus       125 ~~ig~~~~i~~~~  137 (246)
                      +.|++++.|....
T Consensus       384 ~~i~~~~~i~~~~  396 (425)
T PRK00725        384 CVIPEGMVIGEDP  396 (425)
T ss_pred             CEECCCCEECCCC
Confidence            8888888887654

>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]

Probab=98.49  E-value=2e-07  Score=77.44  Aligned_cols=96  Identities=21%  Similarity=0.232  Sum_probs=74.0

Q ss_pred             CCCceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCC
Q 025890           19 NGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQD   98 (246)
Q Consensus        19 ~~~~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~   98 (246)
                      ..+..+..+..+++-+.+|++|.|++++.||++++|++|+.|.+ +.+-.+.+++.++.|..+.+|-++.||.++.|.. 
T Consensus       256 ~p~~~i~~nvlvd~~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~-s~il~~~~~~~~s~i~s~ivg~~~~IG~~~~id~-  333 (371)
T KOG1322|consen  256 LPGSKIVGNVLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQD-STILGADYYETHSEISSSIVGWNVPIGIWARIDK-  333 (371)
T ss_pred             cCCccccccEeeccccccCCccEECCCceECCCcEecCceEEEe-eEEEccceechhHHHHhhhccccccccCceEEec-
Confidence            33455666677777788888888888888888888888888864 4444567888888899999999999999998874 


Q ss_pred             CceeEEcCCCceeecCcccceEECCCcEECcccEEcC
Q 025890           99 GFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDR  135 (246)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~  135 (246)
                                         .++||+++.|...-.++.
T Consensus       334 -------------------~a~lG~nV~V~d~~~vn~  351 (371)
T KOG1322|consen  334 -------------------NAVLGKNVIVADEDYVNE  351 (371)
T ss_pred             -------------------ccEeccceEEeccccccc
Confidence                               788888888877665554

>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit

Probab=98.47  E-value=1e-06  Score=76.85  Aligned_cols=18  Identities=17%  Similarity=0.302  Sum_probs=7.7

Q ss_pred             EeccEECCCcEECCCeEE
Q 025890           78 LSNCIIGDSCIIHNGVCI   95 (246)
Q Consensus        78 I~~~~Ig~~~~I~~~~~i   95 (246)
                      |.++.|+++|.|+++|.|
T Consensus       302 v~~s~i~~~~~I~~~~~i  319 (369)
T TIGR02092       302 VENSILSRGVHVGKDALI  319 (369)
T ss_pred             EeCCEECCCCEECCCCEE
Confidence            334444444444444444

This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.

>TIGR02091 glgC glucose-1-phosphate adenylyltransferase

Probab=98.46  E-value=1.6e-06  Score=75.46  Aligned_cols=18  Identities=22%  Similarity=0.429  Sum_probs=8.1

Q ss_pred             EeccEECCCcEECCCeEE
Q 025890           78 LSNCIIGDSCIIHNGVCI   95 (246)
Q Consensus        78 I~~~~Ig~~~~I~~~~~i   95 (246)
                      +.++.|+++|.|+++|.|
T Consensus       308 v~~s~i~~~~~I~~~~~i  325 (361)
T TIGR02091       308 VSHSVLGIRVRIGSGSTV  325 (361)
T ss_pred             EEccEECCCCEECCCCEE
Confidence            334444444444444444

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.

>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A

Probab=98.40  E-value=6.3e-07  Score=49.94  Aligned_cols=34  Identities=24%  Similarity=0.406  Sum_probs=23.9

Q ss_pred             ceEECCCeEECcCcEECCCcEECCCCEEccCcEEec
Q 025890          176 SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFK  211 (246)
Q Consensus       176 ~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~  211 (246)
                      +++||++|+|+.++++  ++.|++++.|++++++++
T Consensus         1 pv~IG~~~~ig~~~~i--gi~igd~~~i~~g~~I~~   34 (34)
T PF14602_consen    1 PVTIGDNCFIGANSTI--GITIGDGVIIGAGVVITA   34 (34)
T ss_dssp             TEEE-TTEEE-TT-EE--TSEE-TTEEE-TTEEEES
T ss_pred             CeEECCCEEECccccc--CCEEcCCCEECCCCEEcC
Confidence            3678888888888888  589999999999888764

...

>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]

Probab=98.37  E-value=1.4e-06  Score=68.57  Aligned_cols=71  Identities=24%  Similarity=0.337  Sum_probs=47.4

Q ss_pred             ceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcE
Q 025890          118 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVS  196 (246)
Q Consensus       118 ~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~  196 (246)
                      ..+||+-+.+|.++.+..    ++.+|..-   ..+--.+. .||++++|+.++.+.+++.||+++.|+++++|.+++.
T Consensus       168 gvvigeTAvvg~~vSilH----~Vtlggtg---k~~gdrhP-~Igd~vliGaGvtILgnV~IGegavIaAGsvV~kDVP  238 (269)
T KOG4750|consen  168 GVVIGETAVVGDNVSILH----PVTLGGTG---KGSGDRHP-KIGDNVLIGAGVTILGNVTIGEGAVIAAGSVVLKDVP  238 (269)
T ss_pred             ceeecceeEeccceeeec----ceeecccc---ccccccCC-cccCCeEEccccEEeCCeeECCCcEEeccceEEeccC
Confidence            445555555555555442    23333211   11122233 8889999999999999999999999999999999853

>COG4801 Predicted acyltransferase [General function prediction only]

Probab=98.23  E-value=5.3e-05  Score=60.14  Aligned_cols=71  Identities=15%  Similarity=0.089  Sum_probs=43.1

Q ss_pred             cCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEE-eccEECCCcEECCCeEECCC--CceeEEcCCC
Q 025890           37 EVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQD--GFGFFVDEHG  108 (246)
Q Consensus        37 ~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~--~~~~~~~~~~  108 (246)
                      ++++.|.+... ..+++|+.+|-+.+|+....+++||+.+.| ...++..+-.|++++.|...  +.++..++|.
T Consensus        43 ge~v~i~Gdiv-a~diridmw~kv~gNV~ve~dayiGE~~sI~gkl~v~gdLdig~dV~Ieggfva~g~Ivirnp  116 (277)
T COG4801          43 GERVRIYGDIV-AKDIRIDMWCKVTGNVIVENDAYIGEFSSIKGKLTVIGDLDIGADVIIEGGFVAKGWIVIRNP  116 (277)
T ss_pred             ccCcEEeeeEE-ecceeeeeeeEeeccEEEcCceEEeccceeeeeEEEecccccccceEEecCeeecceEEEcCC
Confidence            44444443322 366777777888778778888888888777 44555555566666666542  3344444444

>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=98.22  E-value=8.9e-06  Score=69.82  Aligned_cols=55  Identities=13%  Similarity=0.018  Sum_probs=30.5

Q ss_pred             CcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEEC
Q 025890           39 GAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG   96 (246)
Q Consensus        39 ~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~   96 (246)
                      +..|.......+.+++.+++.+ .++.++++|.|..  .|.+|.|+.++.|+.+|.|.
T Consensus       273 ~w~IyT~~~~~pPak~~~~s~v-~nSLv~~GciI~G--~V~nSVL~~~v~I~~gs~i~  327 (393)
T COG0448         273 NWPIYTKNKNLPPAKFVNDSEV-SNSLVAGGCIISG--TVENSVLFRGVRIGKGSVIE  327 (393)
T ss_pred             CCceeecCCCCCCceEecCceE-eeeeeeCCeEEEe--EEEeeEEecCeEECCCCEEE
Confidence            3344444444455555555554 3555555555554  45666666666666666664

>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix

Probab=98.10  E-value=3.5e-06  Score=47.65  Aligned_cols=34  Identities=21%  Similarity=0.325  Sum_probs=21.5

Q ss_pred             eEECCCeEECcCcEECCCcEECCCCEEccCcEEe
Q 025890          177 ATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVF  210 (246)
Q Consensus       177 ~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~  210 (246)
                      ++|+++++|+.++.|.+++.|++++.|++++.+.
T Consensus         2 ~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I~   35 (36)
T PF00132_consen    2 VVIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVIG   35 (36)
T ss_dssp             EEEETTEEEETTEEEETTEEE-TTEEEETTEEEE
T ss_pred             CEEcCCCEECCCcEecCCCEECCCCEEcCCCEEC
Confidence            4566666666666666666666666666666653

A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....

>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix

Probab=97.86  E-value=2e-05  Score=44.46  Aligned_cols=33  Identities=30%  Similarity=0.542  Sum_probs=18.8

Q ss_pred             cEECCCcEEccceeEecceEECCCeEECcCcEE
Q 025890          159 VAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAV  191 (246)
Q Consensus       159 ~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v  191 (246)
                      ++||+++++++++.+.++++||++|.|+++++|
T Consensus         2 ~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I   34 (36)
T PF00132_consen    2 VVIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVI   34 (36)
T ss_dssp             EEEETTEEEETTEEEETTEEE-TTEEEETTEEE
T ss_pred             CEEcCCCEECCCcEecCCCEECCCCEEcCCCEE
Confidence            445555555555555566666666666666655

A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....

>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A

Probab=97.66  E-value=7.1e-05  Score=41.61  Aligned_cols=16  Identities=44%  Similarity=0.648  Sum_probs=9.0

Q ss_pred             eEECCCeEECcCcEEC
Q 025890          177 ATIGDYVTLGGRVAVR  192 (246)
Q Consensus       177 ~~Ig~~~~Ig~~~~v~  192 (246)
                      +.|||+|.|++++++.
T Consensus        18 i~igd~~~i~~g~~I~   33 (34)
T PF14602_consen   18 ITIGDGVIIGAGVVIT   33 (34)
T ss_dssp             SEE-TTEEE-TTEEEE
T ss_pred             CEEcCCCEECCCCEEc
Confidence            6667777666666653

...

>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []

Probab=89.88  E-value=0.97  Score=40.21  Aligned_cols=44  Identities=20%  Similarity=0.328  Sum_probs=28.3

Q ss_pred             EECCceEEeccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcC
Q 025890           71 NIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDR  135 (246)
Q Consensus        71 ~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~  135 (246)
                      .+.+.+.|.++.+..++.++++++|.                     ++.++.++.||++|+|..
T Consensus       275 ~~~~~~~VinSil~~~~~vg~~svIe---------------------~s~l~~~~~IG~~cIisG  318 (414)
T PF07959_consen  275 DSEASSCVINSILEGGVSVGPGSVIE---------------------HSHLGGPWSIGSNCIISG  318 (414)
T ss_pred             ccCCCeeEEEeEecCCceECCCCEEE---------------------eeecCCCCEECCCCEEEC
Confidence            44555566666666667777776665                     666666666666666653

; GO: 0016772 transferase activity, transferring phosphorus-containing groups

>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []

Probab=86.32  E-value=1.1  Score=39.89  Aligned_cols=33  Identities=12%  Similarity=0.229  Sum_probs=15.6

Q ss_pred             cEECCCCEECCceEEeccEECCCcEECCCeEEC
Q 025890           64 VTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG   96 (246)
Q Consensus        64 ~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~   96 (246)
                      +++..++.++++++|+++.++.++.||++|.|.
T Consensus       285 Sil~~~~~vg~~svIe~s~l~~~~~IG~~cIis  317 (414)
T PF07959_consen  285 SILEGGVSVGPGSVIEHSHLGGPWSIGSNCIIS  317 (414)
T ss_pred             eEecCCceECCCCEEEeeecCCCCEECCCCEEE
Confidence            334444444444444445555555555555543

; GO: 0016772 transferase activity, transferring phosphorus-containing groups

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	246
2iu8_A	374	Chlamydia Trachomatis Lpxd With 25mm Udpglcnac (Com		2e-37
3eh0_A	341	Crystal Structure Of Lpxd From Escherichia Coli Len		1e-33
3pmo_A	372	The Structure Of Lpxd From Pseudomonas Aeruginosa A		2e-29
4e75_A	357	Structure Of Lpxd From Acinetobacter Baumannii At 2		2e-25
1j2z_A	270	Crystal Structure Of Udp-n-acetylglucosamine Acyltr		4e-10
4e6t_A	294	Structure Of Lpxa From Acinetobacter Baumannii At 1		1e-09
4eqy_A	283	Crystal Structure Of Acyl-[acyl-Carrier-Protein]--U		2e-09
3t57_A	305	Activity And Crystal Structure Of Arabidopsis Udp-N		3e-09
4e6u_A	265	Structure Of Lpxa From Acinetobacter Baumannii At 1		4e-09
2jf2_A	264	Nucleotide Substrate Binding By Udp-n-acetylglucosa		2e-08
2aq9_A	262	Structure Of E. Coli Lpxa With A Bound Peptide That		2e-08
3r0s_A	266	Udp-N-Acetylglucosamine Acyltransferase From Campyl		1e-06
3hsq_A	259	Structural Basis For The Sugar Nucleotide And Acyl		3e-05
3fs8_A	273	Crystal Structure Of Qdtc, The Dtdp-3-Amino-3,6-Did		7e-05
4aa7_A	231	E.Coli Glmu In Complex With An Antibacterial Inhibi		1e-04
1hv9_A	456	Structure Of E. Coli Glmu: Analysis Of Pyrophosphor		2e-04
3twd_A	222	Glmuc1 In Complex With An Antibacterial Inhibitor L		7e-04

>pdb|2IU8|A Chain A, Chlamydia Trachomatis Lpxd With 25mm Udpglcnac (Complex I) Length = 374

Iteration: 1
 Score =  152 bits (384), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 90/216 (41%), Positives = 122/216 (56%), Gaps = 1/216 (0%)
Query: 22  GIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNC 81
            + H +A I+  V IE  A+V   A +G+   IGSG+V+G   T+G+ + I   V +   
Sbjct: 131 AVIHPTAIIEDHVCIEPYAVVCQHAHVGSACHIGSGSVIGAYSTVGEHSYIHPRVVIRER 190
Query: 82  I-IGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRD 140
           + IG   II  G  IG  GFG+     G       L    I + VEIGAN+ IDRG ++ 
Sbjct: 191 VSIGKRVIIQPGAVIGSCGFGYVTSAFGQHKHLKHLGKVIIEDDVEIGANTTIDRGRFKH 250
Query: 141 TVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASK 200
           +V+ + SKIDNLVQI H V +G+  M+  Q GIAGS  IG++V +GG+  +  H+ IA  
Sbjct: 251 SVVREGSKIDNLVQIAHQVEVGQHSMIVAQAGIAGSTKIGNHVIIGGQAGITGHICIADH 310
Query: 201 VRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVAN 236
           V + A + V K IT PG YGG PA P  E  RQVA 
Sbjct: 311 VIMMAQTGVTKSITSPGIYGGAPARPYQEIHRQVAK 346

>pdb|3EH0|A Chain A, Crystal Structure Of Lpxd From Escherichia Coli Length = 341

Iteration: 1
 Score =  139 bits (351), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 90/217 (41%), Positives = 121/217 (55%), Gaps = 9/217 (4%)
Query: 27  SACIDST------VLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSN 80
           SA ID+T      V I   A++ S   LG NV IG+G  VG    IG  + +  NV + +
Sbjct: 103 SAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYH 162
Query: 81  CI-IGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWR 139
            I IG +C+I +G  +G DGFG+  ++ GN +K PQ+    IG+ VEIGA + IDRG+  
Sbjct: 163 EIQIGQNCLIQSGTVVGADGFGY-ANDRGNWVKIPQIGRVIIGDRVEIGACTTIDRGALD 221
Query: 140 DTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIAS 199
           DT+IG+   IDN  QI HNV IG +  + G V +AGS  IG Y  +GG   +  H+ I  
Sbjct: 222 DTIIGNGVIIDNQCQIAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGHMEICD 281
Query: 200 KVRLAANSCVFKDITEPGDY-GGFPAVPIHEWRRQVA 235
           KV +     V + ITEPG Y  G P  P   WR+  A
Sbjct: 282 KVTVTGMGMVMRPITEPGVYSSGIPLQPNKVWRKTAA 318

>pdb|3PMO|A Chain A, The Structure Of Lpxd From Pseudomonas Aeruginosa At 1.3 A Resolution Length = 372

Iteration: 1
 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/216 (37%), Positives = 115/216 (53%), Gaps = 3/216 (1%)
Query: 23  IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NC 81
           I    A +D +  +   A++ S A +GA V IG+  V+G    IG+   +   V L  + 
Sbjct: 127 IVAADAEVDPSASVGAYAVIESGARIGAGVSIGAHCVIGARSVIGEGGWLAPRVTLYHDV 186
Query: 82  IIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDT 141
            IG    I +G  IG +GFGF  +E G   K  Q+    IG+ VEIGAN+ IDRG+  DT
Sbjct: 187 TIGARVSIQSGAVIGGEGFGF-ANEKGVWQKIAQIGGVTIGDDVEIGANTTIDRGALSDT 245
Query: 142 VIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKV 201
           +IG+  K+DN + I HNV IG    +   VGI+GSA IG +  L G V +  H+ I   V
Sbjct: 246 LIGNGVKLDNQIMIAHNVQIGDHTAMAACVGISGSAKIGRHCMLAGGVGLVGHIEICDNV 305
Query: 202 RLAANSCVFKDITEPGDYGGFPAV-PIHEWRRQVAN 236
            +   + V + ITEPG Y    A+ P  EW++  A 
Sbjct: 306 FVTGMTMVTRSITEPGSYSSGTAMQPAAEWKKSAAR 341

>pdb|4E75|A Chain A, Structure Of Lpxd From Acinetobacter Baumannii At 2.85a Resolution (p21 Form) Length = 357

Iteration: 1
 Score =  112 bits (279), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 108/222 (48%), Gaps = 15/222 (6%)
Query: 27  SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIG- 84
           S  I+ST  I   A++   A +G  V IG   VVG    I   T +  NV +  +C I  
Sbjct: 102 STGIESTARIHPSAVISETAYIGHYVVIGENCVVGDNTVIQSHTKLDDNVEVGKDCFIDS 161
Query: 85  -----------DSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCI 133
                      D   IH+   IG +GFGF     G   +  QL +  IGN V IG+N  I
Sbjct: 162 YVTITGSSKLRDRVRIHSSTVIGGEGFGF-APYQGKWHRIAQLGSVLIGNDVRIGSNCSI 220
Query: 134 DRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRD 193
           DRG+  +T++ D   IDNLVQI HNV IG +  +  + GIAGS  IG    L G   V  
Sbjct: 221 DRGALDNTILEDGVIIDNLVQIAHNVHIGSNTAIAAKCGIAGSTKIGKNCILAGACGVAG 280
Query: 194 HVSIASKVRLAANSCVFKDITEPGDY-GGFPAVPIHEWRRQV 234
           H+SIA  V L   S V K+I+E G Y  G      + W++ +
Sbjct: 281 HLSIADNVTLTGMSMVTKNISEAGTYSSGTGLFENNHWKKTI 322

>pdb|1J2Z|A Chain A, Crystal Structure Of Udp-n-acetylglucosamine Acyltransferase Length = 270

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 81/185 (43%), Gaps = 26/185 (14%)
Query: 40  AIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDG 99
           AI+  KA +   V IG   V+G  V + +   +  NV L           H  V    + 
Sbjct: 8   AIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQG---------HTFVGKNTEI 58
Query: 100 FGFFVDEHGNMLKKPQLLNARIGNHVE--IGANSCI---------DRGSWRDTVIGDHSK 148
           F F V     +  +PQ L  + G + E  IG ++ I           G  + T+IGD + 
Sbjct: 59  FPFAV-----LGTQPQDLKYK-GEYSELIIGEDNLIREFCMINPGTEGGIKKTLIGDKNL 112
Query: 149 IDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSC 208
           +   V + H+  IG  C+L   V +AG   IGDYV +GG  A+   V IA    +A  S 
Sbjct: 113 LMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFVRIAKGCMIAGKSA 172
Query: 209 VFKDI 213
           + KD+
Sbjct: 173 LGKDV 177

>pdb|4E6T|A Chain A, Structure Of Lpxa From Acinetobacter Baumannii At 1.8a Resolution (P212121 Form) Length = 294

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 91/209 (43%), Gaps = 18/209 (8%)
Query: 23  IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCI 82
           ++ Q A   +  LI   AI+   AV+ ++V IG   ++GP VTIG  T +  +V +    
Sbjct: 26  LYFQGAGTSNHDLIHSTAIIDPSAVIASDVQIGPYCIIGPQVTIGAGTKLHSHVVVGGFT 85
Query: 83  -IGDSCIIHNGVCIG---QDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSW 138
            IG +  I     +G   QD           +  K +     IGN+  I  +  + RG+ 
Sbjct: 86  RIGQNNEIFQFASVGEVCQD-----------LKYKGEETWLEIGNNNLIREHCSLHRGTV 134
Query: 139 RD---TVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHV 195
           +D   T IG H+ +     I H+  +G   +    VG+AG   IGD+V +GG   +    
Sbjct: 135 QDNALTKIGSHNLLMVNTHIAHDCIVGDHNIFANNVGVAGHVHIGDHVIVGGNSGIHQFC 194
Query: 196 SIASKVRLAANSCVFKDITEPGDYGGFPA 224
            I S   +   S + KD+       G PA
Sbjct: 195 KIDSYSMIGGASLILKDVPAYVMASGNPA 223

>pdb|4EQY|A Chain A, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N- Acetylglucosamine O-Acyltransferase From Burkholderia Thailandensis Length = 283

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 82/191 (42%), Gaps = 24/191 (12%)
Query: 30  IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCII 89
           I  T +IE GA +H        V +G   +VG  VTIG  T IG +            +I
Sbjct: 25  IHPTAIIEPGAQLHE------TVEVGPYAIVGSNVTIGARTTIGSH-----------SVI 67
Query: 90  HNGVCIGQDG-FGFFVDEHG---NMLKKPQLLNARIGNHVEIGANSCIDRGSWRD---TV 142
                IG+D   G +    G   +M  K +     IG+   I   + I  G+ +D   T 
Sbjct: 68  EGHTTIGEDNRIGHYASVGGRPQDMKYKDEPTRLVIGDRNTIREFTTIHTGTVQDAGVTT 127
Query: 143 IGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVR 202
           +GD + I   V IGH+  +G   +L     +AG   IGD+  +GG   V  +V I +   
Sbjct: 128 LGDDNWIMAYVHIGHDCRVGSHVVLSSNAQMAGHVEIGDWAIVGGMSGVHQYVRIGAHSM 187
Query: 203 LAANSCVFKDI 213
           L   S + +DI
Sbjct: 188 LGGASALVQDI 198

>pdb|3T57|A Chain A, Activity And Crystal Structure Of Arabidopsis Udp-N-Acetylglucosamine Acyltransferase Length = 305

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 85/209 (40%), Gaps = 30/209 (14%)
Query: 31  DSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-------SNCII 83
           DS VLI   A+VH  AV      IG G  VGP  TIG S  +G    L        N  +
Sbjct: 5   DSEVLIHPSAVVHPNAV------IGKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFGNTEL 58
Query: 84  GDSCIIHNGVCIGQD--GFGF-----FVDEHGNMLKKPQLLNAR--------IGNHVEIG 128
           G+SC++  G  +G +  G+ F      +  H  +  K Q L  +        IGN+ EI 
Sbjct: 59  GESCVLMTGAVVGDELPGYTFIGCNNIIGHHAVVGVKCQDLKYKHGDECFLCIGNNNEIR 118
Query: 129 ANSCIDRGSWRD--TVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLG 186
               I R S     TVIGD++ I     I H+  IG   +      +AG   + D     
Sbjct: 119 EFCSIHRSSKPSDKTVIGDNNLIMGSCHIAHDCKIGDRNIFANNTLLAGHVVVEDNTHTA 178
Query: 187 GRVAVRDHVSIASKVRLAANSCVFKDITE 215
           G   V     I S   +   S V +D+ +
Sbjct: 179 GASVVHQFCHIGSFAFIGGGSVVSQDVPK 207

>pdb|4E6U|A Chain A, Structure Of Lpxa From Acinetobacter Baumannii At 1.4a Resolution (P63 Form) Length = 265

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 86/193 (44%), Gaps = 10/193 (5%)
Query: 35  LIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVC 94
           LI   AI+   AV+ ++V IG   ++GP VTIG  T +      S+ ++G    I     
Sbjct: 9   LIHSTAIIDPSAVIASDVQIGPYCIIGPQVTIGAGTKLH-----SHVVVGGFTRIGQNNE 63
Query: 95  IGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRD---TVIGDHSKIDN 151
           I Q  F    +   ++  K +     IGN+  I  +  + RG+ +D   T IG H+ +  
Sbjct: 64  IFQ--FASVGEVCQDLKYKGEETWLEIGNNNLIREHCSLHRGTVQDNALTKIGSHNLLMV 121
Query: 152 LVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFK 211
              I H+  +G   +    VG+AG   IGD+V +GG   +     I S   +   S + K
Sbjct: 122 NTHIAHDCIVGDHNIFANNVGVAGHVHIGDHVIVGGNSGIHQFCKIDSYSMIGGASLILK 181
Query: 212 DITEPGDYGGFPA 224
           D+       G PA
Sbjct: 182 DVPAYVMASGNPA 194

>pdb|2JF2|A Chain A, Nucleotide Substrate Binding By Udp-n-acetylglucosamine Acyltransferase Length = 264

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 90/193 (46%), Gaps = 18/193 (9%)
Query: 28  ACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDS 86
           + ID +  +   AIV   A +GAN  IG   +VGP V IG+ T +  +V ++ +  IG  
Sbjct: 2   SMIDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRD 61
Query: 87  CIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDH 146
             I+    IG+      V++      +P  +   IG+   I  +  I RG+ +    G  
Sbjct: 62  NEIYQFASIGE------VNQDLKYAGEPTRV--EIGDRNRIRESVTIHRGTVQG---GGL 110
Query: 147 SKI--DNLV----QIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASK 200
           +K+  DNL+     I H+  +G  C+L     +AG  ++ D+  +GG  AV     I + 
Sbjct: 111 TKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIGAH 170
Query: 201 VRLAANSCVFKDI 213
           V +   S V +D+
Sbjct: 171 VMVGGCSGVAQDV 183

>pdb|2AQ9|A Chain A, Structure Of E. Coli Lpxa With A Bound Peptide That Is Competitive With Acyl-Acp Length = 262

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 89/191 (46%), Gaps = 18/191 (9%)
Query: 30  IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCI 88
           ID +  +   AIV   A +GAN  IG   +VGP V IG+ T +  +V ++ +  IG    
Sbjct: 2   IDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNE 61
Query: 89  IHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSK 148
           I+    IG+      V++      +P  +   IG+   I  +  I RG+ +    G  +K
Sbjct: 62  IYQFASIGE------VNQDLKYAGEPTRV--EIGDRNRIRESVTIHRGTVQG---GGLTK 110
Query: 149 I--DNLV----QIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVR 202
           +  DNL+     I H+  +G  C+L     +AG  ++ D+  +GG  AV     I + V 
Sbjct: 111 VGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIGAHVM 170
Query: 203 LAANSCVFKDI 213
           +   S V +D+
Sbjct: 171 VGGCSGVAQDV 181

>pdb|3R0S|A Chain A, Udp-N-Acetylglucosamine Acyltransferase From Campylobacter Jejuni Length = 266

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 79/195 (40%), Gaps = 27/195 (13%)
Query: 22  GIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNC 81
            +  + A +   V+IE  A V   A +G NV I  G  +    TIG  + +      S  
Sbjct: 11  AVIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGARILSDTTIGDHSRV-----FSYA 65
Query: 82  IIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRD- 140
           I+GD         I QD             K+ Q     IG +  I   + I+ G+ +  
Sbjct: 66  IVGD---------IPQD----------ISYKEEQKSGVVIGKNATIREFATINSGTAKGD 106
Query: 141 --TVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIA 198
             T IGD++ I     I H+  +G + +L     +AG   +GD+  +GG   +   V + 
Sbjct: 107 GFTRIGDNAFIXAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGLTPIHQFVKVG 166
Query: 199 SKVRLAANSCVFKDI 213
               +A  S + +DI
Sbjct: 167 EGCXIAGASALSQDI 181

>pdb|3HSQ|A Chain A, Structural Basis For The Sugar Nucleotide And Acyl Chain Selectivity Of Leptospira Interrogans Lpxa Length = 259

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 84/204 (41%), Gaps = 24/204 (11%)
Query: 25  HQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIG-FNVALSNCII 83
           H +A ID    +     V   +++  NV I  GT++   V I   + IG FN      +I
Sbjct: 4   HPTAIIDPKAELHESVEVGPYSIIEGNVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAVI 63
Query: 84  GDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNAR-IGNHVEIGANSCIDRGSWRD-- 140
           G          + QD  GF            QLL    IG+H      S I +G+  D  
Sbjct: 64  G---------VMPQD-LGF----------NQQLLTKTVIGDHNIFREYSNIHKGTKEDSP 103
Query: 141 TVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASK 200
           TVIG+ +       +GH+  +G + +L     +AG  T+G++  + G VAV     +   
Sbjct: 104 TVIGNKNYFMGNSHVGHDCILGNNNILTHGAVLAGHVTLGNFAFISGLVAVHQFCFVGDY 163
Query: 201 VRLAANSCVFKDITEPGDYGGFPA 224
             +A  + V +D+       G P+
Sbjct: 164 SMVAGLAKVVQDVPPYSTVDGNPS 187

>pdb|3FS8|A Chain A, Crystal Structure Of Qdtc, The Dtdp-3-Amino-3,6-Dideoxy-D- Glucose N-Acetyl Transferase From Thermoanaerobacterium Thermosaccharolyticum In Complex With Acetyl-Coa Length = 273

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 71/168 (42%), Gaps = 9/168 (5%)
Query: 54  IGSGTVVGPAVTIGQSTNIGFNVALSN-CIIGDSCIIHNGVCIGQDGF--GFFVDEHGNM 110
           I    ++   V IG++  I  NV +   CII D+  I  G  IG       + VD + + 
Sbjct: 5   ISKSAIIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYNDR 64
Query: 111 LKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQ 170
           + K   L   IG +  I   + I    + DT+IGD+ +  + V I  N  IG +  +   
Sbjct: 65  INKKHPL--IIGENALIRTENVI----YGDTIIGDNFQTGHKVTIRENTKIGNNVKIGTL 118
Query: 171 VGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGD 218
             I     IG+YV +   V V +   I   V L  +  +  D T P +
Sbjct: 119 SDIQHHVYIGNYVNIHSNVFVGEKSIIKDFVWLFPHVVLTNDPTPPSN 166

>pdb|4AA7|A Chain A, E.Coli Glmu In Complex With An Antibacterial Inhibitor Length = 231

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 93/243 (38%), Gaps = 25/243 (10%)
Query: 2   LLYVSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVG 61
           L  +  +   +Q +K    G +    A  D       G + H     G +V I +  ++ 
Sbjct: 7   LSRLERVYQSEQAEKLLLAGVMLRDPARFDLR-----GTLTH-----GRDVEIDTNVIIE 56
Query: 62  PAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGF--FVDEHGNMLKKPQLLN- 118
             VT+G    IG    + N +IGD C I     +          +     +    +LL  
Sbjct: 57  GNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGPFARLRPGAELLEG 116
Query: 119 ARIGNHVEIGANSCIDRGSWRD--TVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGS 176
           A +GN VE+   + + +GS     T +GD        +IG NV IG   + C   G    
Sbjct: 117 AHVGNFVEM-KKARLGKGSKAGHLTYLGD-------AEIGDNVNIGAGTITCNYDGANKF 168
Query: 177 AT-IGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPG-DYGGFPAVPIHEWRRQV 234
            T IGD V +G    +   V++     +AA + V +++ E        P      WRR V
Sbjct: 169 KTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRNVGENALAISRVPQTQKEGWRRPV 228
Query: 235 ANQ 237
             +
Sbjct: 229 KKK 231

>pdb|1HV9|A Chain A, Structure Of E. Coli Glmu: Analysis Of Pyrophosphorylase And Acetyltransferase Active Sites Length = 456

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 79/196 (40%), Gaps = 15/196 (7%)
Query: 49  GANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGF--FVDE 106
           G +V I +  ++   VT+G    IG    + N +IGD C I     +          +  
Sbjct: 269 GRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGP 328
Query: 107 HGNMLKKPQLLN-ARIGNHVEIGANSCIDRGSWRD--TVIGDHSKIDNLVQIGHNVAIGK 163
              +    +LL  A +GN VE+   + + +GS     T +GD        +IG NV IG 
Sbjct: 329 FARLRPGAELLEGAHVGNFVEM-KKARLGKGSKAGHLTYLGD-------AEIGDNVNIGA 380
Query: 164 SCMLCGQVGIAGSAT-IGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPG-DYGG 221
             + C   G     T IGD V +G    +   V++     +AA + V +++ E       
Sbjct: 381 GTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRNVGENALAISR 440
Query: 222 FPAVPIHEWRRQVANQ 237
            P      WRR V  +
Sbjct: 441 VPQTQKEGWRRPVKKK 456

>pdb|3TWD|A Chain A, Glmuc1 In Complex With An Antibacterial Inhibitor Length = 222

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 88/228 (38%), Gaps = 25/228 (10%)
Query: 12  QQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTN 71
           +Q +K    G +    A  D       G + H     G +V I +  ++   VT+G    
Sbjct: 11  EQAEKLLLAGVMLRDPARFDLR-----GTLTH-----GRDVEIDTNVIIEGNVTLGHRVK 60
Query: 72  IGFNVALSNCIIGDSCIIHNGVCIGQDGFGF--FVDEHGNMLKKPQLLN-ARIGNHVEIG 128
           IG    + N +IGD C I     +          +     +    +LL  A +GN VE+ 
Sbjct: 61  IGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGPFARLRPGAELLEGAHVGNFVEM- 119
Query: 129 ANSCIDRGSWRD--TVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSAT-IGDYVTL 185
             + + +GS     T +GD        +IG NV IG   + C   G     T IGD V +
Sbjct: 120 KKARLGKGSKAGHLTYLGD-------AEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFV 172
Query: 186 GGRVAVRDHVSIASKVRLAANSCVFKDITEPG-DYGGFPAVPIHEWRR 232
           G    +   V++     +AA + V +++ E        P      WRR
Sbjct: 173 GSDTQLVAPVTVGKGATIAAGTTVTRNVGENALAISRVPQTQKEGWRR 220

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	246
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	2e-90
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	2e-87
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	5e-04
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	2e-87
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	9e-04
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	1e-43
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	2e-04
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	5e-25
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	6e-25
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	2e-24
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	1e-23
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	2e-23
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	4e-23
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	1e-16
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	2e-08
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	9e-16
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	1e-07
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	1e-04
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	7e-14
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	6e-11
2pig_A	334	Putative transferase; SCR6, NESG, YDCK, structural	4e-13
2pig_A	334	Putative transferase; SCR6, NESG, YDCK, structural	1e-07
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	2e-12
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	7e-09
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	2e-12
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	9e-08
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	7e-04
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	9e-12
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	2e-05
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	3e-08
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	2e-07
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	3e-07
4e8l_A	219	Virginiamycin A acetyltransferase; structural geno	4e-07
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	2e-06
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	3e-06
3eev_A	212	Chloramphenicol acetyltransferase; beta-helix, str	4e-06
1mr7_A	209	Streptogramin A acetyltransferase; LEFT-handed par	4e-06
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	2e-05
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	7e-05
3jqy_B	252	NEUO, polysialic acid O-acetyltransferase; LEFT-ha	6e-05
1xat_A	212	Xenobiotic acetyltransferase; chloramphenicol, LEF	1e-04
3f1x_A	310	Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9	2e-04
3q1x_A	313	Serine acetyltransferase; cysteine biosynthesis, L	6e-04
3kwd_A	213	Carbon dioxide concentrating mechanism protein; LE	8e-04

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* Length = 374

 Score =  270 bits (693), Expect = 2e-90
 Identities = 90/212 (42%), Positives = 120/212 (56%), Gaps = 1/212 (0%)

Query: 25  HQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCII 83
           H +A I+  V IE  A+V   A +G+   IGSG+V+G   T+G+ + I   V +     I
Sbjct: 134 HPTAIIEDHVCIEPYAVVCQHAHVGSACHIGSGSVIGAYSTVGEHSYIHPRVVIRERVSI 193

Query: 84  GDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVI 143
           G   II  G  IG  GFG+     G       L    I + VEIGAN+ IDRG ++ +V+
Sbjct: 194 GKRVIIQPGAVIGSCGFGYVTSAFGQHKHLKHLGKVIIEDDVEIGANTTIDRGRFKHSVV 253

Query: 144 GDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL 203
            + SKIDNLVQI H V +G+  M+  Q GIAGS  IG++V +GG+  +  H+ IA  V +
Sbjct: 254 REGSKIDNLVQIAHQVEVGQHSMIVAQAGIAGSTKIGNHVIIGGQAGITGHICIADHVIM 313

Query: 204 AANSCVFKDITEPGDYGGFPAVPIHEWRRQVA 235
            A + V K IT PG YGG PA P  E  RQVA
Sbjct: 314 MAQTGVTKSITSPGIYGGAPARPYQEIHRQVA 345

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} Length = 372

 Score =  263 bits (674), Expect = 2e-87
 Identities = 81/213 (38%), Positives = 113/213 (53%), Gaps = 3/213 (1%)

Query: 25  HQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCII 83
              A +D +  +   A++ S A +GA V IG+  V+G    IG+   +   V L  +  I
Sbjct: 129 AADAEVDPSASVGAYAVIESGARIGAGVSIGAHCVIGARSVIGEGGWLAPRVTLYHDVTI 188

Query: 84  GDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVI 143
           G    I +G  IG +GFGF  +E G   K  Q+    IG+ VEIGAN+ IDRG+  DT+I
Sbjct: 189 GARVSIQSGAVIGGEGFGF-ANEKGVWQKIAQIGGVTIGDDVEIGANTTIDRGALSDTLI 247

Query: 144 GDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL 203
           G+  K+DN + I HNV IG    +   VGI+GSA IG +  L G V +  H+ I   V +
Sbjct: 248 GNGVKLDNQIMIAHNVQIGDHTAMAACVGISGSAKIGRHCMLAGGVGLVGHIEICDNVFV 307

Query: 204 AANSCVFKDITEPGDY-GGFPAVPIHEWRRQVA 235
              + V + ITEPG Y  G    P  EW++  A
Sbjct: 308 TGMTMVTRSITEPGSYSSGTAMQPAAEWKKSAA 340

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} Length = 372

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 11/65 (16%), Positives = 23/65 (35%)

Query: 142 VIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKV 201
           ++   +++D    +G    I     +   V I     IG    +G    +   V++   V
Sbjct: 127 IVAADAEVDPSASVGAYAVIESGARIGAGVSIGAHCVIGARSVIGEGGWLAPRVTLYHDV 186

Query: 202 RLAAN 206
            + A 
Sbjct: 187 TIGAR 191

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} Length = 341

 Score =  261 bits (670), Expect = 2e-87
 Identities = 85/213 (39%), Positives = 117/213 (54%), Gaps = 3/213 (1%)

Query: 25  HQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCII 83
             +A + + V I   A++ S   LG NV IG+G  VG    IG  + +  NV +     I
Sbjct: 107 DATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYHEIQI 166

Query: 84  GDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVI 143
           G +C+I +G  +G DGFG+  ++ GN +K PQ+    IG+ VEIGA + IDRG+  DT+I
Sbjct: 167 GQNCLIQSGTVVGADGFGY-ANDRGNWVKIPQIGRVIIGDRVEIGACTTIDRGALDDTII 225

Query: 144 GDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL 203
           G+   IDN  QI HNV IG +  + G V +AGS  IG Y  +GG   +  H+ I  KV +
Sbjct: 226 GNGVIIDNQCQIAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGHMEICDKVTV 285

Query: 204 AANSCVFKDITEPGDY-GGFPAVPIHEWRRQVA 235
                V + ITEPG Y  G P  P   WR+  A
Sbjct: 286 TGMGMVMRPITEPGVYSSGIPLQPNKVWRKTAA 318

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} Length = 341

 Score = 38.7 bits (91), Expect = 9e-04
 Identities = 17/65 (26%), Positives = 28/65 (43%)

Query: 142 VIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKV 201
           VI   +K+ N V IG N  I     L   V I     +G    +G    +  +V+I  ++
Sbjct: 105 VIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYHEI 164

Query: 202 RLAAN 206
           ++  N
Sbjct: 165 QIGQN 169

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273

 Score =  147 bits (373), Expect = 1e-43
 Identities = 51/223 (22%), Positives = 81/223 (36%), Gaps = 19/223 (8%)

Query: 23  IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNV---ALS 79
           I  +   I   V IE    +    ++  NV I  G+ +G    +G+     +N       
Sbjct: 10  IIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYNDRINKKH 69

Query: 80  NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWR 139
             IIG++ +I     I  D       + G+  K     N +IGN+V+IG  S I      
Sbjct: 70  PLIIGENALIRTENVIYGDTIIGDNFQTGH--KVTIRENTKIGNNVKIGTLSDIQH---- 123

Query: 140 DTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAG----------SATIGDYVTLGGRV 189
              IG++  I + V +G    I     L   V +              TI  +  +  R 
Sbjct: 124 HVYIGNYVNIHSNVFVGEKSIIKDFVWLFPHVVLTNDPTPPSNELLGVTIELFAVIAARS 183

Query: 190 AVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRR 232
            V   + I     + A + V KD+ +     G PA  I   R+
Sbjct: 184 VVLPGIHINEDALVGAGAVVTKDVPKETVVVGNPAREICSIRK 226

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 13/60 (21%), Positives = 22/60 (36%)

Query: 143 IGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVR 202
           I   + I   V IG NV I  +  +     I  +  I     +G R  + +++      R
Sbjct: 5   ISKSAIIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYNDR 64

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} Length = 283

 Score = 98.9 bits (247), Expect = 5e-25
 Identities = 56/207 (27%), Positives = 85/207 (41%), Gaps = 26/207 (12%)

Query: 18  HNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVA 77
           H+ G +  Q+    S   I   AI+   A L   V +G   +VG  VTIG  T IG +  
Sbjct: 7   HHMGTLEAQTQGPGSMSRIHPTAIIEPGAQLHETVEVGPYAIVGSNVTIGARTTIGSHSV 66

Query: 78  LS-NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLL-------NARIGNHVEIGA 129
           +  +  IG+   I +   +G                 PQ +          IG+   I  
Sbjct: 67  IEGHTTIGEDNRIGHYASVGGR---------------PQDMKYKDEPTRLVIGDRNTIRE 111

Query: 130 NSCIDRGSWRD---TVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLG 186
            + I  G+ +D   T +GD + I   V IGH+  +G   +L     +AG   IGD+  +G
Sbjct: 112 FTTIHTGTVQDAGVTTLGDDNWIMAYVHIGHDCRVGSHVVLSSNAQMAGHVEIGDWAIVG 171

Query: 187 GRVAVRDHVSIASKVRLAANSCVFKDI 213
           G   V  +V I +   L   S + +DI
Sbjct: 172 GMSGVHQYVRIGAHSMLGGASALVQDI 198

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A Length = 262

 Score = 98.4 bits (246), Expect = 6e-25
 Identities = 51/195 (26%), Positives = 82/195 (42%), Gaps = 26/195 (13%)

Query: 30  IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCI 88
           ID +  +   AIV   A +GAN  IG   +VGP V IG+ T +  +V ++ +  IG    
Sbjct: 2   IDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNE 61

Query: 89  IHNGVCIGQDGFGFFVDEHGNMLKKPQLL-------NARIGNHVEIGANSCIDRGSWRD- 140
           I+    IG+                 Q L          IG+   I  +  I RG+ +  
Sbjct: 62  IYQFASIGEV---------------NQDLKYAGEPTRVEIGDRNRIRESVTIHRGTVQGG 106

Query: 141 --TVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIA 198
             T +G  + +     I H+  +G  C+L     +AG  ++ D+  +GG  AV     I 
Sbjct: 107 GLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIG 166

Query: 199 SKVRLAANSCVFKDI 213
           + V +   S V +D+
Sbjct: 167 AHVMVGGCSGVAQDV 181

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} PDB: 3i3a_A* 3i3x_A* Length = 259

 Score = 96.5 bits (241), Expect = 2e-24
 Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 16/180 (8%)

Query: 40  AIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCIG-- 96
           AI+  KA L  +V +G  +++   V+I + T I  +V +     IG     H G  IG  
Sbjct: 7   AIIDPKAELHESVEVGPYSIIEGNVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAVIGVM 66

Query: 97  -QDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRD--TVIGDHSKIDNLV 153
            QD    F  +              IG+H      S I +G+  D  TVIG+ +      
Sbjct: 67  PQDLG--FNQQLLTKTV--------IGDHNIFREYSNIHKGTKEDSPTVIGNKNYFMGNS 116

Query: 154 QIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDI 213
            +GH+  +G + +L     +AG  T+G++  + G VAV     +     +A  + V +D+
Sbjct: 117 HVGHDCILGNNNILTHGAVLAGHVTLGNFAFISGLVAVHQFCFVGDYSMVAGLAKVVQDV 176

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 Length = 270

 Score = 95.0 bits (237), Expect = 1e-23
 Identities = 52/185 (28%), Positives = 76/185 (41%), Gaps = 26/185 (14%)

Query: 40  AIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCIGQD 98
           AI+  KA +   V IG   V+G  V + +   +  NV L  +  +G +  I     +G  
Sbjct: 8   AIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQ 67

Query: 99  GFGFFVDEHGNMLKKPQLL-------NARIGNHVEIGANSCIDRGSWRD---TVIGDHSK 148
                          PQ L          IG    I     I+ G+      T+IGD + 
Sbjct: 68  ---------------PQDLKYKGEYSELIIGEDNLIREFCMINPGTEGGIKKTLIGDKNL 112

Query: 149 IDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSC 208
           +   V + H+  IG  C+L   V +AG   IGDYV +GG  A+   V IA    +A  S 
Sbjct: 113 LMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFVRIAKGCMIAGKSA 172

Query: 209 VFKDI 213
           + KD+
Sbjct: 173 LGKDV 177

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} Length = 266

 Score = 94.6 bits (236), Expect = 2e-23
 Identities = 43/190 (22%), Positives = 79/190 (41%), Gaps = 17/190 (8%)

Query: 31  DSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCII 89
           ++   I   A++   A LG +V I +   V     IG +  I     +  +  IGD   +
Sbjct: 2   NAMKKIHPSAVIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGARILSDTTIGDHSRV 61

Query: 90  HNGVCIG---QDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRD---TVI 143
            +   +G   QD    + +E  + +         IG +  I   + I+ G+ +    T I
Sbjct: 62  FSYAIVGDIPQDIS--YKEEQKSGVV--------IGKNATIREFATINSGTAKGDGFTRI 111

Query: 144 GDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL 203
           GD++ I     I H+  +G + +L     +AG   +GD+  +GG   +   V +     +
Sbjct: 112 GDNAFIMAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGLTPIHQFVKVGEGCMI 171

Query: 204 AANSCVFKDI 213
           A  S + +DI
Sbjct: 172 AGASALSQDI 181

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} Length = 305

 Score = 94.4 bits (235), Expect = 4e-23
 Identities = 52/206 (25%), Positives = 82/206 (39%), Gaps = 24/206 (11%)

Query: 29  CIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSC 87
             DS VLI   A+VH  AV+G  V +G    +G +V +G    +  +  +  N  +G+SC
Sbjct: 3   SRDSEVLIHPSAVVHPNAVIGKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFGNTELGESC 62

Query: 88  IIHNGVCIGQDGFGFFVDEHGNML-------KKPQLLNARIG--NHVEIGANSCI----- 133
           ++  G  +G +  G+      N++        K Q L  + G    + IG N+ I     
Sbjct: 63  VLMTGAVVGDELPGYTFIGCNNIIGHHAVVGVKCQDLKYKHGDECFLCIGNNNEIREFCS 122

Query: 134 ------DRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGG 187
                        TVIGD++ I     I H+  IG   +      +AG   + D     G
Sbjct: 123 IHRSSKPSDK---TVIGDNNLIMGSCHIAHDCKIGDRNIFANNTLLAGHVVVEDNTHTAG 179

Query: 188 RVAVRDHVSIASKVRLAANSCVFKDI 213
              V     I S   +   S V +D+
Sbjct: 180 ASVVHQFCHIGSFAFIGGGSVVSQDV 205

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* Length = 220

 Score = 75.5 bits (186), Expect = 1e-16
 Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 2/112 (1%)

Query: 118 NARIGNHVEIGANSCIDRGS--WRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAG 175
           +A +   V +G    +  G     D+ IGD + I+    + H+  +G +C L     +AG
Sbjct: 105 SAVVSPSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVDHDCRLGAACHLGPASALAG 164

Query: 176 SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI 227
             ++G+   LG    V   V+I +   + A   V +D+ +     G PA   
Sbjct: 165 GVSVGERAFLGVGARVIPGVTIGADTIVGAGGVVVRDLPDSVLAIGVPAKIK 216

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* Length = 220

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 18/120 (15%), Positives = 34/120 (28%), Gaps = 27/120 (22%)

Query: 23  IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS--- 79
             H SA +  +V +  G  V +   + A+  IG   ++     +     +G    L    
Sbjct: 101 AIHPSAVVSPSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVDHDCRLGAACHLGPAS 160

Query: 80  ----NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDR 135
                  +G+   +  G  +                         IG    +GA   + R
Sbjct: 161 ALAGGVSVGERAFLGVGARVIP--------------------GVTIGADTIVGAGGVVVR 200

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A Length = 194

 Score = 72.3 bits (178), Expect = 9e-16
 Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 4/108 (3%)

Query: 120 RIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATI 179
                + I     I+        I     ++    I H   IG+   +      AG+  I
Sbjct: 91  EENAGILIMPYVVINA----KAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKI 146

Query: 180 GDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI 227
           G    LG    V  ++S+A    L   + + K+  E G + G PA  +
Sbjct: 147 GKNCFLGINSCVLPNLSLADDSILGGGATLVKNQDEKGVFVGVPAKRM 194

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A Length = 194

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 21/145 (14%), Positives = 55/145 (37%), Gaps = 34/145 (23%)

Query: 5   VSDIESRQQFQKWHNGGG-----IFHQSACIDSTVLIEVG--------AIVHSKAVLGAN 51
           + + E R++  +  +  G     + H+SA I  + ++E           ++++KA +   
Sbjct: 54  IGNNEIRKKIYQKISENGFKIVNLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKG 113

Query: 52  VCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNM 110
           V + + +V+     IG+ +++      + N  IG +C +    C+               
Sbjct: 114 VILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLP------------- 160

Query: 111 LKKPQLLNARIGNHVEIGANSCIDR 135
                  N  + +   +G  + + +
Sbjct: 161 -------NLSLADDSILGGGATLVK 178

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A Length = 194

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 14/72 (19%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 28  ACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCI-IGDS 86
           A I+  V++   +++  + V+G    +  G      V IG++  +G N  +   + + D 
Sbjct: 108 AKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADD 167

Query: 87  CIIHNGVCIGQD 98
            I+  G  + ++
Sbjct: 168 SILGGGATLVKN 179

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* Length = 192

 Score = 66.9 bits (163), Expect = 7e-14
 Identities = 34/182 (18%), Positives = 51/182 (28%), Gaps = 32/182 (17%)

Query: 49  GANVCIGSGTVVGPAVTIGQSTNIG-FNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEH 107
           G    I    +V     IG  + I  +        IG+ C +   V +G           
Sbjct: 1   GHMATIHPTAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGN---------- 50

Query: 108 GNMLKKPQLLNARIGNHVEIGANSCIDRGSW--RDTVIGDHSKIDNLVQIGHNVAIGKSC 165
                       RIGN V+I  N  +    +   D   G      N+      +      
Sbjct: 51  ----------RVRIGNRVKIQNNVSVYDNVFLEDDVFCGPSMVFTNVYNPRAAIERKSEY 100

Query: 166 MLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAV 225
                        +    TLG    V    +I     + A + V KD+ +     G PA 
Sbjct: 101 RDT---------IVRQGATLGANCTVVCGATIGRYAFVGAGAVVNKDVPDFALVVGVPAR 151

Query: 226 PI 227
            I
Sbjct: 152 QI 153

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* Length = 192

 Score = 58.8 bits (142), Expect = 6e-11
 Identities = 24/137 (17%), Positives = 50/137 (36%), Gaps = 10/137 (7%)

Query: 34  VLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNG 92
             I   AIV   A +GA+  I     +     IG+  ++G NV + +   IG+   I N 
Sbjct: 4   ATIHPTAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQNN 63

Query: 93  VCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNL 152
           V +          ++  +        + +  +V     +   +  +RDT++   + +   
Sbjct: 64  VSV---------YDNVFLEDDVFCGPSMVFTNVYNPRAAIERKSEYRDTIVRQGATLGAN 114

Query: 153 VQIGHNVAIGKSCMLCG 169
             +     IG+   +  
Sbjct: 115 CTVVCGATIGRYAFVGA 131

>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A Length = 334

 Score = 66.8 bits (162), Expect = 4e-13
 Identities = 24/214 (11%), Positives = 65/214 (30%), Gaps = 17/214 (7%)

Query: 23  IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCI 82
           I+ ++A   +   I   A +     L  NV IG    +  A     +         S+ +
Sbjct: 61  IYDENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSV 120

Query: 83  IGDSCIIHNGVCIG------QDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG 136
             +  I  +   +         G      +   +  +  + ++RI + V++  N+ I   
Sbjct: 121 REECAIYGDARVLNQSEILAIQGLTHEHAQILQIYDRATVNHSRIVHQVQLYGNATITHA 180

Query: 137 SWRDTV-----------IGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTL 185
                              ++  I +  ++  +  +           +  S+ + ++  +
Sbjct: 181 FIEHRAEVFDFALIEGDKDNNVWICDCAKVYGHARVIAGTEEDAIPTLRYSSQVAEHALI 240

Query: 186 GGRVAVRDHVSIASKVRLAANSCVFKDITEPGDY 219
            G   ++ HV +     +     +  D      +
Sbjct: 241 EGNCVLKHHVLVGGHAEVRGGPILLDDRVLIEGH 274

>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A Length = 334

 Score = 50.6 bits (120), Expect = 1e-07
 Identities = 27/210 (12%), Positives = 56/210 (26%), Gaps = 35/210 (16%)

Query: 20  GGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS 79
                   A I   V I+  ++    A+ G    +    ++       +   I       
Sbjct: 99  DRADISDGARISDNVTIQSSSVREECAIYGDARVLNQSEILAIQGLTHEHAQILQIY--D 156

Query: 80  NCIIGDSCIIHNGVCIGQDGFGFFVDEH-----------GNMLKKPQLL-NARIGNHVEI 127
              +  S I+H     G         EH           G+      +   A++  H  +
Sbjct: 157 RATVNHSRIVHQVQLYGNATITHAFIEHRAEVFDFALIEGDKDNNVWICDCAKVYGHARV 216

Query: 128 GANSCIDRGSW--RDTVIGDHSKIDNLVQIGHNVAIGKS-------------------CM 166
            A +  D        + + +H+ I+    + H+V +G                       
Sbjct: 217 IAGTEEDAIPTLRYSSQVAEHALIEGNCVLKHHVLVGGHAEVRGGPILLDDRVLIEGHAC 276

Query: 167 LCGQVGIAGSATIGDYVTLGGRVAVRDHVS 196
           + G++ I     I     +        H+ 
Sbjct: 277 IQGEILIERQVEISGRAAVIAFDDNTIHLR 306

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* Length = 240

 Score = 64.1 bits (156), Expect = 2e-12
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 12/118 (10%)

Query: 118 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSA 177
           +  IG++  I  N+ I+ G     VIG+ S ID    +G    +GK+C +     +AG  
Sbjct: 103 HVEIGDNAVIMMNATINIG----AVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAGVI 158

Query: 178 --------TIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI 227
                    + D V +G  V V + V++     +AA + V +D+       G PA  I
Sbjct: 159 EPPSAKPVIVEDDVVIGANVVVLEGVTVGKGAVVAAGAVVTEDVPPYTVVAGTPARVI 216

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* Length = 240

 Score = 53.7 bits (129), Expect = 7e-09
 Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 9/115 (7%)

Query: 35  LIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVC 94
           L  + A +   A++  +V IG   V+    TI     IG        +I  + ++     
Sbjct: 87  LKGIKARIEPGAIIRDHVEIGDNAVIMMNATINIGAVIG-----EGSMIDMNAVLGGRAT 141

Query: 95  IGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKI 149
           +G++           +++ P      + + V IGAN  +  G      +G  + +
Sbjct: 142 VGKNCHVGAGAVLAGVIEPPSAKPVIVEDDVVIGANVVVLEG----VTVGKGAVV 192

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401

 Score = 64.9 bits (159), Expect = 2e-12
 Identities = 34/207 (16%), Positives = 60/207 (28%), Gaps = 59/207 (28%)

Query: 30  IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCII 89
           +D+ V  +    V     +   V I     +     I     IG         IG +  +
Sbjct: 223 LDNLVFSQNLGNVEDNVKIKGKVIIEEDAEIKSGTYIEGPVYIG-----KGSEIGPNSYL 277

Query: 90  HNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKI 149
                + +                      +IG  VE+           +++VI + SKI
Sbjct: 278 RPYTILVE--------------------KNKIGASVEV-----------KESVIMEGSKI 306

Query: 150 DNLV-----QIGHNVAIGKSCMLCGQVGIAGS------------------ATIGDYVTLG 186
            +L       I  +V  G   ++                           A IG +V  G
Sbjct: 307 PHLSYVGDSVIAEDVNFGAGTLIANLRFDEKEVKVNVKGKRISSGRRKLGAFIGGHVRTG 366

Query: 187 GRVAVRDHVSIASKVRLAANSCVFKDI 213
             V +   V I +  R+   + V +D+
Sbjct: 367 INVTILPGVKIGAYARIYPGAVVNRDV 393

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401

 Score = 51.0 bits (123), Expect = 9e-08
 Identities = 38/187 (20%), Positives = 54/187 (28%), Gaps = 51/187 (27%)

Query: 22  GIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNC 81
           G    +  I   V+IE  A + S   +   V IG G+ +GP   +   T +         
Sbjct: 233 GNVEDNVKIKGKVIIEEDAEIKSGTYIEGPVYIGKGSEIGPNSYLRPYTILV-----EKN 287

Query: 82  IIGDSC-----IIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGA-----NS 131
            IG S      +I  G  I           H + +      ++ I   V  GA     N 
Sbjct: 288 KIGASVEVKESVIMEGSKIP----------HLSYVG-----DSVIAEDVNFGAGTLIANL 332

Query: 132 CIDRGSWRD---------------TVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGS 176
             D    +                  IG H +    V I   V IG          I   
Sbjct: 333 RFDEKEVKVNVKGKRISSGRRKLGAFIGGHVRTGINVTILPGVKIGAYAR------IYPG 386

Query: 177 ATIGDYV 183
           A +   V
Sbjct: 387 AVVNRDV 393

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401

 Score = 39.1 bits (92), Expect = 7e-04
 Identities = 17/82 (20%), Positives = 24/82 (29%), Gaps = 4/82 (4%)

Query: 120 RIGNHVE-IGANSCIDRGS---WRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAG 175
            IG     I  N               + D+ KI   V I  +  I     + G V I  
Sbjct: 208 DIGKPWNIIDVNKWALDNLVFSQNLGNVEDNVKIKGKVIIEEDAEIKSGTYIEGPVYIGK 267

Query: 176 SATIGDYVTLGGRVAVRDHVSI 197
            + IG    L     + +   I
Sbjct: 268 GSEIGPNSYLRPYTILVEKNKI 289

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* Length = 205

 Score = 61.2 bits (149), Expect = 9e-12
 Identities = 29/183 (15%), Positives = 53/183 (28%), Gaps = 35/183 (19%)

Query: 48  LGANVCIGSGTVV--GPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCIGQDGFGFFV 104
           +G NV I     +     ++IG +  I     LS    IG    I     +     G   
Sbjct: 35  VGKNVLISKKASIYNPGVISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGI-- 92

Query: 105 DEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKS 164
                           + +   I + + +                     +G  +     
Sbjct: 93  ---------------EMYDFANISSRTIV---------YAAIDDFSGNALMGPTIPNQYK 128

Query: 165 CMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPA 224
            +  G+V       +  +V +G    +  +V I   V + A S V + + +   Y G P 
Sbjct: 129 NVKTGKV------ILKKHVIIGAHSIIFPNVVIGEGVAVGAMSMVKESLDDWYIYVGVPV 182

Query: 225 VPI 227
             I
Sbjct: 183 RKI 185

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* Length = 205

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 21/119 (17%), Positives = 37/119 (31%), Gaps = 19/119 (15%)

Query: 34  VLIEVGAIVHSKAVLGANVCIGSGTVVGPA---VTIGQSTNIGFNVALSNCIIGDSCIIH 90
           V I+   I+  K  +G+   I + T +      + +                I    I++
Sbjct: 59  VRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGIEMY-----------DFANISSRTIVY 107

Query: 91  NGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKI 149
             +               N  K  +     +  HV IGA+S I        VIG+   +
Sbjct: 108 AAIDDFSGNA-LMGPTIPNQYKNVKTGKVILKKHVIIGAHSIIFPN----VVIGEGVAV 161

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} Length = 420

 Score = 52.6 bits (127), Expect = 3e-08
 Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 17/98 (17%)

Query: 30  IDSTV----LIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGD 85
           + S V    +I   A+  S  +L   V   S + +  AV +  S  IG +  LSN +I  
Sbjct: 323 VSSVVSGDCIISGAALNRS--LLFTGVRANSYSRLENAV-VLPSVKIGRHAQLSNVVIDH 379

Query: 86  SCIIHNGVCIG----QDGFGFFVDEHG------NMLKK 113
             +I  G+ +G     D   F   E G      +M+ K
Sbjct: 380 GVVIPEGLIVGEDPELDAKRFRRTESGICLITQSMIDK 417

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* Length = 468

 Score = 50.2 bits (121), Expect = 2e-07
 Identities = 46/198 (23%), Positives = 77/198 (38%), Gaps = 43/198 (21%)

Query: 30  IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCII 89
           ID  V I     + +  +L     IG+ TV+     +  ST IG    ++N +I +   +
Sbjct: 271 IDIDVEIAPEVQIEANVILKGQTKIGAETVLTNGTYVVDST-IGAGAVITNSMI-EESSV 328

Query: 90  HNGVCIGQDGFGFFVDEH---GNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDH 146
            +GV +G      +   H    + L         IGN VE+           + + IG++
Sbjct: 329 ADGVTVGP-----YA--HIRPNSSLGA----QVHIGNFVEV-----------KGSSIGEN 366

Query: 147 SKIDNL-----VQIGHNVAIGKSCMLCGQV-----GIAGSAT-IGDYVTLGGRVAVRDHV 195
           +K  +L      ++G NV  G      G +     G     T IGD V +G    +   V
Sbjct: 367 TKAGHLTYIGNCEVGSNVNFG-----AGTITVNYDGKNKYKTVIGDNVFVGSNSTIIAPV 421

Query: 196 SIASKVRLAANSCVFKDI 213
            +     + A S + KD+
Sbjct: 422 ELGDNSLVGAGSTITKDV 439

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* Length = 501

 Score = 49.5 bits (119), Expect = 3e-07
 Identities = 43/198 (21%), Positives = 69/198 (34%), Gaps = 43/198 (21%)

Query: 30  IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCII 89
           ID  V I    ++H    L     IG   VVGP  T+     +G   ++       S  I
Sbjct: 280 IDVDVTIGRDTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVA-VGDGASVVRTHG-SSSSI 337

Query: 90  HNGVCIGQDGFGFFVDEH---GNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDH 146
            +G  +G      F   +   G  L      + ++G  VE+           +++ IG  
Sbjct: 338 GDGAAVGP-----FT--YLRPGTALGA----DGKLGAFVEV-----------KNSTIGTG 375

Query: 147 SKIDNL-----VQIGHNVAIGKSCMLCGQV-----GIAGSAT-IGDYVTLGGRVAVRDHV 195
           +K+ +L       IG    IG        V     G +   T +G +V  G        V
Sbjct: 376 TKVPHLTYVGDADIGEYSNIG-----ASSVFVNYDGTSKRRTTVGSHVRTGSDTMFVAPV 430

Query: 196 SIASKVRLAANSCVFKDI 213
           +I       A + V +D+
Sbjct: 431 TIGDGAYTGAGTVVREDV 448

>4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus} Length = 219

 Score = 48.4 bits (115), Expect = 4e-07
 Identities = 28/177 (15%), Positives = 50/177 (28%), Gaps = 29/177 (16%)

Query: 51  NVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNM 110
           N+     T+    + +G+ +              +  ++++   IG              
Sbjct: 22  NLQFIKPTITNENILVGEYSYYDSKR----GESFEDQVLYHYEVIGD------------- 64

Query: 111 LKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQ 170
                     IG    IG  +             D S     +         K       
Sbjct: 65  -------KLIIGRFCSIGPGTTFIMNG--ANHRMDGSTYPFHLFRMGW---EKYMPSLKD 112

Query: 171 VGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI 227
           + + G   IG+ V +G  V +   V I     +AA + V K++      GG P   I
Sbjct: 113 LPLKGDIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTKNVAPYSIVGGNPLKFI 169

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* Length = 456

 Score = 47.1 bits (113), Expect = 2e-06
 Identities = 37/137 (27%), Positives = 52/137 (37%), Gaps = 37/137 (27%)

Query: 34  VLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGV 93
           V I+V  I+     LG  V IG+G V+   V IG    I     L + I+G+   I    
Sbjct: 272 VEIDVNVIIEGNVKLGDRVKIGTGCVLK-NVVIGNDVEIKPYSVLEDSIVGEKAAI---- 326

Query: 94  CIGQDGFGFFVDEH---GNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKID 150
                  G F       G  L         +GN VEI           + + +G  SK++
Sbjct: 327 -------GPFS--RLRPGAELAA----ETHVGNFVEI-----------KKSTVGKGSKVN 362

Query: 151 NL-----VQIGHNVAIG 162
           +L      +IG N  IG
Sbjct: 363 HLTYVGDSEIGSNCNIG 379

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* Length = 459

 Score = 46.3 bits (111), Expect = 3e-06
 Identities = 33/137 (24%), Positives = 50/137 (36%), Gaps = 37/137 (27%)

Query: 34  VLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGV 93
           + I+   I+    +LG  V IG+G V+     IG  + I     L +  +  +C +    
Sbjct: 275 ITIDTNVIIEGHVILGDRVRIGTGCVL-KNCVIGDDSEISPYTVLEDARLDANCTV---- 329

Query: 94  CIGQDGFGFFVDEH---GNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKID 150
                  G F       G  L +     A +GN VEI           +   +G  SK  
Sbjct: 330 -------GPFA--RLRPGAELAE----GAHVGNFVEI-----------KKARLGKGSKAG 365

Query: 151 NL-----VQIGHNVAIG 162
           +L      +IG  V IG
Sbjct: 366 HLSYLGDAEIGAGVNIG 382

>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} Length = 212

 Score = 45.3 bits (107), Expect = 4e-06
 Identities = 30/154 (19%), Positives = 47/154 (30%), Gaps = 13/154 (8%)

Query: 76  VALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDR 135
           V   N I+G      +G   G          H       +L    IG+   IG+ +    
Sbjct: 20  VTNPNIIVGKHSYY-SGYYHGHSFDDCVRYLHPERDDVDKL---VIGSFCSIGSGAVF-- 73

Query: 136 GSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGI--AGSATIGDYVTLGGRVAVRD 193
                 + G+     + +                + G   +G   IG  V +G    +  
Sbjct: 74  -----MMAGNQGHRSDWISTFPFFYQDNDNFADARDGFTRSGDTIIGHDVWIGTEAMIMP 128

Query: 194 HVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI 227
            V I     +A+ S V KD+      G  PA  I
Sbjct: 129 GVKIGHGAIIASRSVVTKDVAPYEVVGSNPAKHI 162

>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A* Length = 209

 Score = 45.3 bits (107), Expect = 4e-06
 Identities = 34/150 (22%), Positives = 53/150 (35%), Gaps = 34/150 (22%)

Query: 112 KKPQLLNARI--GNHVEIGANSCIDRGSWR---DTVIGDHSKIDNLVQIGHNVAIGKSC- 165
           K  Q +   +    +VE+G  S  D  +       ++  +  +++ ++IG   +IG    
Sbjct: 15  KSVQFIKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGVT 74

Query: 166 ----------------------------MLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI 197
                                           Q+ I G   IG+ V +G  V +   V I
Sbjct: 75  IIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKI 134

Query: 198 ASKVRLAANSCVFKDITEPGDYGGFPAVPI 227
                +AANS V KDI      GG PA  I
Sbjct: 135 GDGAIVAANSVVVKDIAPYMLAGGNPANEI 164

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} Length = 496

 Score = 44.6 bits (105), Expect = 2e-05
 Identities = 26/133 (19%), Positives = 43/133 (32%), Gaps = 10/133 (7%)

Query: 21  GGIFHQSACIDSTVLIEVGAIVHSK--AVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL 78
            G+  +   +      EV A  H    A   +   +    V+     IG++  +     L
Sbjct: 247 TGVLMEFVEVRQEDFEEVFASGHMASGAGSASGASVSGYAVIKGDTVIGENVLVSQRAYL 306

Query: 79  SNCIIGD-SCIIHNGVCIGQDGFGFFVD-EHGNMLKKPQLLNARIGNHVEIGANSCIDRG 136
            N  +G  S    N   I            HG       ++NA +G+ +  G NS +   
Sbjct: 307 DNAWMGKGSNAQENCY-IINSRLERNCVTAHGGK-----IINAHLGDMIFTGFNSFLQGS 360

Query: 137 SWRDTVIGDHSKI 149
                 IGD   +
Sbjct: 361 ESSPLKIGDGCVV 373

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} Length = 496

 Score = 42.7 bits (100), Expect = 7e-05
 Identities = 12/96 (12%), Positives = 29/96 (30%), Gaps = 17/96 (17%)

Query: 45  KAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFV 104
            A +G          +  +  + ++        + N  +GD               GF  
Sbjct: 308 NAWMGKGSNAQENCYIINS-RLERNCVTAHGGKIINAHLGDMIFT-----------GF-- 353

Query: 105 DEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRD 140
               + L+  +    +IG+   +  ++ ID     +
Sbjct: 354 ---NSFLQGSESSPLKIGDGCVVMPHTIIDLEEPLE 386

>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli} Length = 252

 Score = 42.1 bits (99), Expect = 6e-05
 Identities = 36/141 (25%), Positives = 53/141 (37%), Gaps = 23/141 (16%)

Query: 122 GNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCML-------------C 168
           G+ V IG  + I  G     V+ D   +     IGH+  I +  +L              
Sbjct: 103 GSKVIIGRRTTIGAGF---EVVTDKCNV----TIGHDCMIARDVILRASDGHPIFDIHSK 155

Query: 169 GQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIH 228
            ++  A    I  YV +G  V++   VS+ S   +   S V KD+       G PA  I 
Sbjct: 156 KRINWAKDIIISSYVWVGRNVSIMKGVSVGSGSVIGYGSIVTKDVPSMCAAAGNPAKIIK 215

Query: 229 E---WRRQVANQIRSSKKRTS 246
               W R    ++ S  KR S
Sbjct: 216 RNIIWARTDKAELISDDKRCS 236

>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A* Length = 212

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 22/153 (14%), Positives = 40/153 (26%), Gaps = 37/153 (24%)

Query: 112 KKPQLLNARIGN-HVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQ 170
            + +LL+ ++ N ++ +G  S         +       +         + IG  C +   
Sbjct: 9   FRGKLLSEQVSNPNIRVGRYSYYSGYYHGHSFDDCARYLMPDRDDVDKLVIGSFCSIGSG 68

Query: 171 VGI------------------------------------AGSATIGDYVTLGGRVAVRDH 194
                                                  AG   IG  V +G        
Sbjct: 69  AAFIMAGNQGHRAEWASTFPFHFMHEEPAFAGAVNGYQPAGDTLIGHEVWIGTEAMFMPG 128

Query: 195 VSIASKVRLAANSCVFKDITEPGDYGGFPAVPI 227
           V +     + + + V  D+      GG PA  I
Sbjct: 129 VRVGHGAIIGSRALVTGDVEPYAIVGGNPARTI 161

>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482} Length = 310

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 44/125 (35%)

Query: 43  HSKAVLGANVCI--GSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGF 100
           H  A +G +  I  G+G V      IG +            IIG++  ++ GV +G    
Sbjct: 194 HPGAQIGHHFTIDHGTGVV------IGAT-----------SIIGNNVKLYQGVTLG--AK 234

Query: 101 GFFVDEHGNMLKKPQLLNAR---IGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGH 157
            F +D +GN +K       R   + + V + +N+         T++G        V IG 
Sbjct: 235 SFPLDNNGNPIKG----IPRHPILEDDVIVYSNA---------TILGR-------VTIGK 274

Query: 158 NVAIG 162
              +G
Sbjct: 275 GATVG 279

>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A Length = 313

 Score = 39.4 bits (92), Expect = 6e-04
 Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 33/112 (29%)

Query: 43  HSKAVLGANVCI--GSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGF 100
           H  A +  +  I  G G V      IG++            IIG+ C I+  V +G   F
Sbjct: 167 HPGASIKGHFFIDHGVGVV------IGET-----------AIIGEWCRIYQSVTLGAMHF 209

Query: 101 GFFVDEHGNMLKKPQLLNAR---IGNHVEIGANSCIDRGSWRDTVIGDHSKI 149
               +E G + +       R   +G++V IG  + +  G   + ++G H +I
Sbjct: 210 Q---EEGGVIKRG----TKRHPTVGDYVTIGTGAKV-LG---NIIVGSHVRI 250

>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A Length = 213

 Score = 38.6 bits (90), Expect = 8e-04
 Identities = 25/133 (18%), Positives = 39/133 (29%), Gaps = 32/133 (24%)

Query: 30  IDSTVLIEVGAIVHSKAVLGANVCIGSGTV----VGPAVTIGQSTNI---------GFNV 76
           I  T  +   + +     +   V I  GT      G    IG  TNI             
Sbjct: 42  IAPTAYVHSFSNLIGDVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQGR 101

Query: 77  ALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG 136
            + +     S  I + V I           H  ++  P    A IG+   IG  S +   
Sbjct: 102 VIGDDGQEYSVWIGDNVSIT----------HMALIHGP----AYIGDGCFIGFRSTV--- 144

Query: 137 SWRDTVIGDHSKI 149
              +  +G    +
Sbjct: 145 --FNARVGAGCVV 155

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	246
4e79_A	357	UDP-3-O-acylglucosamine N-acyltransferase; lipopol	100.0
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	100.0
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	100.0
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	100.0
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	100.0
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	100.0
4e6u_A	265	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	100.0
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	100.0
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	100.0
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	100.0
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	100.0
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	100.0
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	99.96
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	99.96
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	99.96
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	99.94
4e79_A	357	UDP-3-O-acylglucosamine N-acyltransferase; lipopol	99.93
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	99.93
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.93
4e6u_A	265	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.93
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	99.92
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	99.92
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	99.92
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.92
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.92
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	99.92
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	99.91
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	99.91
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	99.91
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	99.91
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	99.89
2pig_A	334	Putative transferase; SCR6, NESG, YDCK, structural	99.89
3tv0_A	194	Dynactin subunit 6; LEFT-handed beta-helix, ARP11,	99.89
3nz2_A	195	Hexapeptide-repeat containing-acetyltransferase; s	99.86
3ixc_A	191	Hexapeptide transferase family protein; niaid, ssg	99.86
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	99.85
3tv0_A	194	Dynactin subunit 6; LEFT-handed beta-helix, ARP11,	99.85
3jqy_B	252	NEUO, polysialic acid O-acetyltransferase; LEFT-ha	99.85
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	99.84
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	99.84
3r3r_A	187	Ferripyochelin binding protein; structural genomic	99.84
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	99.84
3ftt_A	199	Putative acetyltransferase sacol2570; galactoside	99.83
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	99.83
3r1w_A	189	Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid	99.83
3hjj_A	190	Maltose O-acetyltransferase; LEFT-handed beta-heli	99.82
1xhd_A	173	Putative acetyltransferase/acyltransferase; struct	99.82
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	99.82
1xhd_A	173	Putative acetyltransferase/acyltransferase; struct	99.82
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	99.82
1v3w_A	173	Ferripyochelin binding protein; beta-helix, carbon	99.81
2wlg_A	215	Polysialic acid O-acetyltransferase; enzyme, LEFT-	99.81
1krr_A	203	Galactoside O-acetyltransferase; LEFT-handed paral	99.8
4hur_A	220	Virginiamycin A acetyltransferase; structural geno	99.8
3srt_A	188	Maltose O-acetyltransferase; structural genomics,	99.8
3eg4_A	304	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.79
1v3w_A	173	Ferripyochelin binding protein; beta-helix, carbon	99.78
1qre_A	247	Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth	99.78
3r3r_A	187	Ferripyochelin binding protein; structural genomic	99.78
3r1w_A	189	Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid	99.78
3gos_A	276	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.77
3kwd_A	213	Carbon dioxide concentrating mechanism protein; LE	99.77
3eg4_A	304	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.77
2pig_A	334	Putative transferase; SCR6, NESG, YDCK, structural	99.77
3kwd_A	213	Carbon dioxide concentrating mechanism protein; LE	99.76
1ocx_A	182	Maltose O-acetyltransferase; LEFT-handed parallel	99.75
4e8l_A	219	Virginiamycin A acetyltransferase; structural geno	99.75
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	99.75
3eev_A	212	Chloramphenicol acetyltransferase; beta-helix, str	99.74
3tk8_A	316	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.74
3tk8_A	316	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.74
2p2o_A	185	Maltose transacetylase; GK1921, GKA001001921.1, ge	99.74
1mr7_A	209	Streptogramin A acetyltransferase; LEFT-handed par	99.73
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	99.72
3q1x_A	313	Serine acetyltransferase; cysteine biosynthesis, L	99.72
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	99.72
3f1x_A	310	Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9	99.7
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	99.7
3gos_A	276	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.69
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	99.68
3mc4_A	287	WW/RSP5/WWP domain:bacterial transferase hexapept	99.67
1qre_A	247	Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth	99.66
1t3d_A	289	SAT, serine acetyltransferase; LEFT-handed-beta-he	99.66
1ssq_A	267	SAT, serine acetyltransferase; LEFT-handed paralle	99.66
3ixc_A	191	Hexapeptide transferase family protein; niaid, ssg	99.65
1xat_A	212	Xenobiotic acetyltransferase; chloramphenicol, LEF	99.64
3fsy_A	332	Tetrahydrodipicolinate N-succinyltransferase; beta	99.61
3jqy_B	252	NEUO, polysialic acid O-acetyltransferase; LEFT-ha	99.6
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	99.6
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	99.58
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	99.58
3r5d_A	347	Tetrahydrodipicolinate N-succinyletransferase; 1.8	99.57
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	99.54
3nz2_A	195	Hexapeptide-repeat containing-acetyltransferase; s	99.53
3r5d_A	347	Tetrahydrodipicolinate N-succinyletransferase; 1.8	99.53
3hjj_A	190	Maltose O-acetyltransferase; LEFT-handed beta-heli	99.53
3fsy_A	332	Tetrahydrodipicolinate N-succinyltransferase; beta	99.51
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	99.49
2wlg_A	215	Polysialic acid O-acetyltransferase; enzyme, LEFT-	99.49
3ftt_A	199	Putative acetyltransferase sacol2570; galactoside	99.47
1krr_A	203	Galactoside O-acetyltransferase; LEFT-handed paral	99.46
2p2o_A	185	Maltose transacetylase; GK1921, GKA001001921.1, ge	99.46
3q1x_A	313	Serine acetyltransferase; cysteine biosynthesis, L	99.45
3srt_A	188	Maltose O-acetyltransferase; structural genomics,	99.43
2rij_A	387	Putative 2,3,4,5-tetrahydropyridine-2-carboxylate	99.39
1ocx_A	182	Maltose O-acetyltransferase; LEFT-handed parallel	99.39
4hur_A	220	Virginiamycin A acetyltransferase; structural geno	99.37
2rij_A	387	Putative 2,3,4,5-tetrahydropyridine-2-carboxylate	99.27
3eev_A	212	Chloramphenicol acetyltransferase; beta-helix, str	99.26
4e8l_A	219	Virginiamycin A acetyltransferase; structural geno	99.26
1mr7_A	209	Streptogramin A acetyltransferase; LEFT-handed par	99.19
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	99.18
3f1x_A	310	Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9	99.17
3mc4_A	287	WW/RSP5/WWP domain:bacterial transferase hexapept	99.12
1t3d_A	289	SAT, serine acetyltransferase; LEFT-handed-beta-he	99.08
1ssq_A	267	SAT, serine acetyltransferase; LEFT-handed paralle	99.03
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	98.93
1xat_A	212	Xenobiotic acetyltransferase; chloramphenicol, LEF	98.91

>4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A

Probab=100.00  E-value=2.7e-36  Score=259.41  Aligned_cols=220  Identities=33%  Similarity=0.501  Sum_probs=185.4

Q ss_pred             ceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECC------CcEECCCCEECCceEE-eccEECCCcEECCCeE
Q 025890           22 GIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGP------AVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVC   94 (246)
Q Consensus        22 ~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~------~~~ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~   94 (246)
                      ..+++.+++++++.|++++.|+++++|+++++|+++|+|++      ++.||++|.|++++.| .++.||++|.|++++.
T Consensus       103 ~~i~p~a~I~~~a~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~g~~  182 (357)
T 4e79_A          103 TGIESTARIHPSAVISETAYIGHYVVIGENCVVGDNTVIQSHTKLDDNVEVGKDCFIDSYVTITGSSKLRDRVRIHSSTV  182 (357)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCE
T ss_pred             CeeCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEEecccEEEeEeeccCCeE
Confidence            35666666666666666666666555555555555555554      5555555555556666 6788999999999999


Q ss_pred             ECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEe
Q 025890           95 IGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIA  174 (246)
Q Consensus        95 i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~  174 (246)
                      |+.+.|++.. ..+.+...++.+.+.||+++.|+++++|.++.++++.||+++.++.++.+++++.||++|+++.++.+.
T Consensus       183 Ig~dgfg~~~-~~g~~~~i~~~g~v~IGd~v~IG~~~~I~~g~~~~t~Ig~~~~I~~~v~I~~~v~IG~~~~i~~~~~i~  261 (357)
T 4e79_A          183 IGGEGFGFAP-YQGKWHRIAQLGSVLIGNDVRIGSNCSIDRGALDNTILEDGVIIDNLVQIAHNVHIGSNTAIAAKCGIA  261 (357)
T ss_dssp             ESCCCCCEEE-ETTEEEECCCCCCEEECTTCEECTTCEECCCSSSCEEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             ECcccCcccc-cCCceeeccccCcEEEcCCcEEccccEEeccccCCccccCCcccCCCcccCCCeEECCCCEECCCCEEC
Confidence            9998898876 567788888888999999999999999999888899999999999999999999999999999999999


Q ss_pred             cceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccC-CCCCeEEccCchhhHHHHHHhhhhhhccc
Q 025890          175 GSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDI-TEPGDYGGFPAVPIHEWRRQVANQIRSSK  242 (246)
Q Consensus       175 ~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~-~~~~~~~g~p~~~~~~~~~~~~~~~~~~~  242 (246)
                      ++++||++|+||+++.|.+++.|+++++|++++.|++|+ |++..+.|+|++.++.|.+.+..+++|.+
T Consensus       262 ~~v~IG~~~~Ig~~s~V~~~~~Ig~~~vv~g~s~V~~~v~~~~~~~~G~Pa~~~~~~~~~~~~~~~l~~  330 (357)
T 4e79_A          262 GSTKIGKNCILAGACGVAGHLSIADNVTLTGMSMVTKNISEAGTYSSGTGLFENNHWKKTIVRLRQLAD  330 (357)
T ss_dssp             TTCEECTTCEECTTCEECSSCEECSSEEECTTCEECSCBCSCEEEECSCCCEEHHHHHHHHHHHHHHTT
T ss_pred             CCcEECCCCEECcCCEECCCeEECCCCEEeecCEEcCccCCCCcEEEeCchHHHHHHHHHHHHHhhcch
Confidence            999999999999999999999999999999999999999 88888899999999999888887777765

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}

Probab=100.00  E-value=3.1e-36  Score=257.84  Aligned_cols=219  Identities=36%  Similarity=0.597  Sum_probs=180.3

Q ss_pred             ceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCc------EECCCCEECCceEE-eccEECCCcEECCCeE
Q 025890           22 GIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAV------TIGQSTNIGFNVAL-SNCIIGDSCIIHNGVC   94 (246)
Q Consensus        22 ~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~------~ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~   94 (246)
                      ..+++.+.+.+++.|++++.|+++++|+++++||++|+|++++      .||++|.|++++.| .++.||++|.|++++.
T Consensus        98 ~~i~~~a~i~~~a~ig~~~~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~g~~  177 (341)
T 3eh0_A           98 QNIAPSAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYHEIQIGQNCLIQSGTV  177 (341)
T ss_dssp             CSBCTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECSSCEECTTCE
T ss_pred             CccCCCcEECCCcEECCCCEECCCcEECCCcEECCCcEECCCcEECCCCEECCCcEECCCcEECCCCEECCccEEcCCcE
Confidence            3456666666666666666666655555555555555555555      45555555555555 5788888888888888


Q ss_pred             ECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEe
Q 025890           95 IGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIA  174 (246)
Q Consensus        95 i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~  174 (246)
                      |+.+.|++... .+.+...++.+.+.||+++.|+++++|.++.+.++.||+++.++.++.+++++.||++|+++.++.+.
T Consensus       178 I~~~~fg~~~~-~~~~~~i~~~g~v~IGd~v~Ig~~~~I~~~~~~~~~Ig~~~~I~~~v~I~~~v~IG~~~~i~~~~~i~  256 (341)
T 3eh0_A          178 VGADGFGYAND-RGNWVKIPQIGRVIIGDRVEIGACTTIDRGALDDTIIGNGVIIDNQCQIAHNVVIGDNTAVAGGVIMA  256 (341)
T ss_dssp             EEECCSCEEEE-TTEEEECCCCCCEEECSSCEECTTCEEECCSSSCEEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             ECCcccccccc-CCccccccccCcEEECCCcEECCccEeeccccCceEeccceEECCCCEEeCCcEECCCCEECCCCEEC
Confidence            88888887654 46677777888999999999999999998888899999999999999999999999999999999999


Q ss_pred             cceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCC-CCCeEEccCchhhHHHHHHhhhhhhcc
Q 025890          175 GSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDIT-EPGDYGGFPAVPIHEWRRQVANQIRSS  241 (246)
Q Consensus       175 ~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~-~~~~~~g~p~~~~~~~~~~~~~~~~~~  241 (246)
                      ++++||++|+||+++.|.+++.|+++++|+++|+|++|+| ++.++.|+||+.++.|.+....+++|.
T Consensus       257 g~v~IG~~~~Ig~~s~V~~~v~Ig~~~vv~a~s~V~~~v~~~~~~~~G~Pa~~~~~~~~~~~~~~~l~  324 (341)
T 3eh0_A          257 GSLKIGRYCMIGGASVINGHMEICDKVTVTGMGMVMRPITEPGVYSSGIPLQPNKVWRKTAALVMNID  324 (341)
T ss_dssp             TTEEECTTCEECTTCEECSSEEECSSEEECTTCEECSCBCSCEEEECCCCCEEHHHHHHHHHHHHTHH
T ss_pred             CCcEECCCcEEcCCCEECCCCEECCCCEEeeCCEECCCcCCCCeEEEecCchhHHHHHHHHHHHHhHH
Confidence            9999999999999999999999999999999999999999 777888999999999987776666664

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}

Probab=100.00  E-value=2.3e-36  Score=260.90  Aligned_cols=219  Identities=34%  Similarity=0.525  Sum_probs=181.4

Q ss_pred             ceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceE------E-eccEECCCcEECCCeE
Q 025890           22 GIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVA------L-SNCIIGDSCIIHNGVC   94 (246)
Q Consensus        22 ~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~------I-~~~~Ig~~~~I~~~~~   94 (246)
                      ..+++.+.+.+++.|++++.|+++++|+++++||++|+|+++++|++++.|+++|.      | .++.||++|.|++++.
T Consensus       120 ~~i~p~a~i~~~a~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~v~IG~~~~I~~~~~I~~~~~IG~~v~I~~g~~  199 (372)
T 3pmo_A          120 AGIHPTAIVAADAEVDPSASVGAYAVIESGARIGAGVSIGAHCVIGARSVIGEGGWLAPRVTLYHDVTIGARVSIQSGAV  199 (372)
T ss_dssp             SEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECTTCE
T ss_pred             cccCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcccCCCcEEEeeeEECceeeccCCcE
Confidence            35666666666666666666666666666666665555555555555555555544      4 4577888888888888


Q ss_pred             ECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEe
Q 025890           95 IGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIA  174 (246)
Q Consensus        95 i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~  174 (246)
                      |+.+.|++.. ..+.+...++.+.+.||+++.|+++++|..+.+.++.||+++.++.++.+.+++.||++|+++.++.+.
T Consensus       200 Ig~dgfg~~~-~~g~~~~i~~~g~v~IGd~v~IGa~~~I~~g~~~~t~IG~~~~I~~~v~I~~~v~IG~~~~I~~~~~I~  278 (372)
T 3pmo_A          200 IGGEGFGFAN-EKGVWQKIAQIGGVTIGDDVEIGANTTIDRGALSDTLIGNGVKLDNQIMIAHNVQIGDHTAMAACVGIS  278 (372)
T ss_dssp             EEECCCCEEE-ETTEEEECCCCCCEEECSSCEECTTCEEECCSSSCEEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             EecCcccccc-cCCcceeccccCCeEECCCCEECCCcEEccCcccceEECCCCEECCCCEECCCCEECCCCEECCCCEEC
Confidence            8888888776 567777778888999999999999999998888899999999999999999999999999999999999


Q ss_pred             cceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccC-CCCCeEEccCchhhHHHHHHhhhhhhcc
Q 025890          175 GSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDI-TEPGDYGGFPAVPIHEWRRQVANQIRSS  241 (246)
Q Consensus       175 ~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~-~~~~~~~g~p~~~~~~~~~~~~~~~~~~  241 (246)
                      ++++||++|+||+++.|.++++|+++++|+++++|++|+ |++.++.|+|++.++.|.+....+++|.
T Consensus       279 ~~v~IG~~~~Ig~~a~V~~~v~Ig~~~vI~a~s~V~k~v~~~~~~~~G~Pa~~~~~~~~~~~~~~~l~  346 (372)
T 3pmo_A          279 GSAKIGRHCMLAGGVGLVGHIEICDNVFVTGMTMVTRSITEPGSYSSGTAMQPAAEWKKSAARIRQLD  346 (372)
T ss_dssp             TTCEECSSCEECTTCEECSSCEECSSEEECTTCEECSCBCSCEEECCSCCCCCHHHHHHHHHHHHTHH
T ss_pred             CCCEECCCeEEeCCCEECCCCEECCCCEEeeCCEEccCcCCCCcEEEeCchHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999 8888999999999998877766666654

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A*

Probab=100.00  E-value=1.9e-35  Score=256.07  Aligned_cols=217  Identities=41%  Similarity=0.648  Sum_probs=176.1

Q ss_pred             eccCcEECCCcEEcCCcEECc------CcEECCCcEECCCCEECCCcEECCCCEECCceEE-eccEECCCcEECCCeEEC
Q 025890           24 FHQSACIDSTVLIEVGAIVHS------KAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIG   96 (246)
Q Consensus        24 i~~~~~i~~~~~I~~~a~I~~------~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~   96 (246)
                      +++.+.+.+++.|++++.|++      ++.|++++.|+++|+|++++.||++|.|++++.| .++.||++|.|++++.|+
T Consensus       127 i~~~~~i~~~a~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~Ig  206 (374)
T 2iu8_A          127 IHPTAVIHPTAIIEDHVCIEPYAVVCQHAHVGSACHIGSGSVIGAYSTVGEHSYIHPRVVIRERVSIGKRVIIQPGAVIG  206 (374)
T ss_dssp             BCTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSEEECTTCEECTTCEEE
T ss_pred             cCCCCEECCCcEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCceeeCCCcEEcccceECCCCEECCCCEEC
Confidence            444555555555555555544      4555555555555555555566666666666666 567888888888888888


Q ss_pred             CCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecc
Q 025890           97 QDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGS  176 (246)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~  176 (246)
                      .+.|++.....+.+...++.+.+.||+++.|+++++|..+.+.++.+++++.++.++.|+++++||+++.+..++.+.++
T Consensus       207 ~~~~~~~~~~~~~~~~i~~~g~v~Ig~~v~IG~~~~I~~~~~~~t~ig~~~~i~~~v~I~~~v~IG~~~~i~~~~~v~~~  286 (374)
T 2iu8_A          207 SCGFGYVTSAFGQHKHLKHLGKVIIEDDVEIGANTTIDRGRFKHSVVREGSKIDNLVQIAHQVEVGQHSMIVAQAGIAGS  286 (374)
T ss_dssp             EECSCEEEETTTEEEECCCCCCEEECTTCEECTTCEEEECSSSCEEECTTCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred             cCCcccccccCCceeEeeeeccEEECCCCEECCCcEEccCcccceeECCCcEECCccccCCccEECCCCEEccCcccCCC
Confidence            87777776666666666777789999999999999999988889999999999999999999999999999999999999


Q ss_pred             eEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhhHHHHHHhhhhhhc
Q 025890          177 ATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRS  240 (246)
Q Consensus       177 ~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~  240 (246)
                      ++||++|+|++++.|.++++||++++|+++|+|++|+|+++++.|+||+.++.|.+..+.+.+|
T Consensus       287 ~~Ig~~~~Ig~~~~i~~~v~Ig~~~~I~a~s~V~~~v~~~~~~~G~pa~~~~~~~~~~~~~~~l  350 (374)
T 2iu8_A          287 TKIGNHVIIGGQAGITGHICIADHVIMMAQTGVTKSITSPGIYGGAPARPYQEIHRQVAKVRNL  350 (374)
T ss_dssp             CEECSSCEECTTCEECSSCEECTTEEECTTCEECSCBCSCEEEEETTEEEHHHHHHHHHHHHTH
T ss_pred             cEECCCeEEecCcEECCCcccCCCcEEccCceeecccCCCcEEeCCCCchhHHHHHHHHHHHhH
Confidence            9999999999999999999999999999999999999999999999999998887655544444

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana}

Probab=100.00  E-value=4.7e-33  Score=234.73  Aligned_cols=203  Identities=23%  Similarity=0.226  Sum_probs=165.0

Q ss_pred             cCCCceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEe-----ccEECCCcEECCC
Q 025890           18 HNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-----NCIIGDSCIIHNG   92 (246)
Q Consensus        18 ~~~~~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~-----~~~Ig~~~~I~~~   92 (246)
                      ....+.+++++.|++++.|++++.|+++++|++++.|++++.|.+++.||++|.|++++.|.     ++.||+++.|+++
T Consensus        10 I~p~A~I~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~d~~g~~~IG~~~~Ig~~   89 (305)
T 3t57_A           10 IHPSAVVHPNAVIGKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFGNTELGESCVLMTGAVVGDELPGYTFIGCNNIIGHH   89 (305)
T ss_dssp             BCTTSEECTTSEECTTCEECTTCEECTTEEECTTCEECTTCEECSSEEECTTCEECTTCEECCSSSEEEEECSSCEECTT
T ss_pred             ECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCcEEccCcEeccCCCCceEECCceEECCc
Confidence            34445555566666666666666666666666666666666666677777777777777774     5899999999999


Q ss_pred             eEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCc--cCeEECCCCEECCCCEEccCcEECCCcEEccc
Q 025890           93 VCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSW--RDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQ  170 (246)
Q Consensus        93 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~--~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~  170 (246)
                      +.|+.++..+.       +...+.....||+++.|+++++|..+..  +++.||+++.++.++.+.++++||+++.++.+
T Consensus        90 a~Ig~~~q~~~-------~~~~~~~~i~IG~~~~I~~~~~I~~g~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~  162 (305)
T 3t57_A           90 AVVGVKCQDLK-------YKHGDECFLCIGNNNEIREFCSIHRSSKPSDKTVIGDNNLIMGSCHIAHDCKIGDRNIFANN  162 (305)
T ss_dssp             CEEEECCCCTT-------CCTTCCEEEEECSSCEECTTCEEECCSSTTCCEEECSSCEECTTCEECTTCEECSSCEECTT
T ss_pred             cEeCccccccc-------eecCCCceEEECCCcccCceEEEeecccccCccEEccCccccceEEEeCceEeCCceEECCC
Confidence            99975432110       1112223689999999999999987653  68999999999999999999999999999999


Q ss_pred             eeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhh
Q 025890          171 VGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI  227 (246)
Q Consensus       171 ~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~  227 (246)
                      +.+.++++|||+||||+++.|.++++||++++|+++|+|++|+||++++.|+||+..
T Consensus       163 ~~i~g~v~Igd~~~Ig~~~~V~~~v~IG~~a~ig~gs~V~~dvp~~~~~~G~Pa~~~  219 (305)
T 3t57_A          163 TLLAGHVVVEDNTHTAGASVVHQFCHIGSFAFIGGGSVVSQDVPKYMMVAGERAELR  219 (305)
T ss_dssp             CEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECSBBCTTEEEETTBTEEE
T ss_pred             cccCCCCEECCceEEcCCCEEcCCeEECCCCEEcCCCeEcccCCCCeEEecCCcEEe
Confidence            999999999999999999999999999999999999999999999999999999764

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A*

Probab=100.00  E-value=1e-32  Score=229.43  Aligned_cols=188  Identities=27%  Similarity=0.360  Sum_probs=142.8

Q ss_pred             CCceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCc--------------------EECCCCEECCceEE-
Q 025890           20 GGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAV--------------------TIGQSTNIGFNVAL-   78 (246)
Q Consensus        20 ~~~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~--------------------~ig~~~~I~~~~~I-   78 (246)
                      ....+++++.|++++.|++++.|++++.|+++++|+++|.|++++                    .||+++.|++++.| 
T Consensus         7 ~~~~I~~~a~I~~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~   86 (273)
T 3fs8_A            7 KSAIIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYNDRINKKHPLIIGENALIRTENVIY   86 (273)
T ss_dssp             TTCEECTTCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEEEECCTTHHHHTCCCCCCEEECTTCEECTTCEEE
T ss_pred             CCeEECCCcEECCCCEECCCcEECCCCEECCCCEECCCcEECCCcEeCCccccccccccccccceEECCCCEECCCCEEe
Confidence            444555555555555555555555555555555555555555443                    34444455544444 


Q ss_pred             eccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccC
Q 025890           79 SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHN  158 (246)
Q Consensus        79 ~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~  158 (246)
                      .++.||+++.|++++.|..                    ++.||+++.|+.++.+.    .++.||+++.++.++.++++
T Consensus        87 ~~~~Ig~~~~Ig~~~~I~~--------------------~~~Ig~~~~Ig~~~~i~----~~~~IG~~~~I~~~~~I~~~  142 (273)
T 3fs8_A           87 GDTIIGDNFQTGHKVTIRE--------------------NTKIGNNVKIGTLSDIQ----HHVYIGNYVNIHSNVFVGEK  142 (273)
T ss_dssp             SSCEECTTCEECSSCEECS--------------------SCEECSSCEECTTCEEC----SSCEECSSCEECTTCEECTT
T ss_pred             CCCEECCCCEECCceEECC--------------------CCEECCCCEECccceeC----CceEECCceEECCCCEECCC
Confidence            4566666666666666653                    67788888888887776    45899999999999999999


Q ss_pred             cEECCCcEEccceeEec----------ceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhhH
Q 025890          159 VAIGKSCMLCGQVGIAG----------SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIH  228 (246)
Q Consensus       159 ~~Ig~~~~i~~~~~~~~----------~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~  228 (246)
                      +.|++++.+.+++.+.+          +++||++||||.+++|.++++||++++|+++|+|++|+|+++++.|+||+.++
T Consensus       143 ~~ig~~~~i~~~~~i~~~~~~~~~~~~~v~Ig~~~~IG~~~~I~~g~~IG~~~~IgagsvV~~dvp~~~~~~G~PA~~i~  222 (273)
T 3fs8_A          143 SIIKDFVWLFPHVVLTNDPTPPSNELLGVTIELFAVIAARSVVLPGIHINEDALVGAGAVVTKDVPKETVVVGNPAREIC  222 (273)
T ss_dssp             CEECTTCEECTTCEECCCSSSSCSCCCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEEETTEEEEE
T ss_pred             ceeCCceeecCceEecCCCCCcccccCCcEECCCeEEcCCCEEcCCCEECCCCEECCCCEECccCCCCcEEEecCcEEec
Confidence            99999999999888876          69999999999999999999999999999999999999999999999999887


Q ss_pred             HHH
Q 025890          229 EWR  231 (246)
Q Consensus       229 ~~~  231 (246)
                      .+.
T Consensus       223 ~~~  225 (273)
T 3fs8_A          223 SIR  225 (273)
T ss_dssp             EGG
T ss_pred             ccc
Confidence            554

>4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A*

Probab=100.00  E-value=4.8e-32  Score=224.43  Aligned_cols=192  Identities=28%  Similarity=0.385  Sum_probs=161.0

Q ss_pred             cEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEE-eccEECCCcEECCCeEECCCCceeEEcC
Q 025890           28 ACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDE  106 (246)
Q Consensus        28 ~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~  106 (246)
                      |.++.++.|+++|.|++++.|++++.|+++|+|++++.|++++.|++++.| .++.||++|.|++++.|+..+..+..  
T Consensus         2 a~ig~~~~I~p~a~i~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~--   79 (265)
T 4e6u_A            2 AGTSNHDLIHSTAIIDPSAVIASDVQIGPYCIIGPQVTIGAGTKLHSHVVVGGFTRIGQNNEIFQFASVGEVCQDLKY--   79 (265)
T ss_dssp             ------CCBCTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSSEEECSSCEECTTCEEEECCCCTTC--
T ss_pred             CCcCCCCeECCCCEECCCCEECCCCEECCCeEECCCCEECCCCEEcCCcEEeCCcEECCCCEEcCCcEECCccccccc--
Confidence            344566667777777777777778888888888888888888888888888 46899999999999999754432111  


Q ss_pred             CCceeecCcccceEECCCcEECcccEEcCCCc---cCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCe
Q 025890          107 HGNMLKKPQLLNARIGNHVEIGANSCIDRGSW---RDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYV  183 (246)
Q Consensus       107 ~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~---~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~  183 (246)
                            ..+...+.||+++.|+++++|..+..   ..+.||+++.++.++.+.+++.||++++++.++.+.++++||++|
T Consensus        80 ------~g~~~~~~IG~~~~Ig~~~~I~~g~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Igd~~  153 (265)
T 4e6u_A           80 ------KGEETWLEIGNNNLIREHCSLHRGTVQDNALTKIGSHNLLMVNTHIAHDCIVGDHNIFANNVGVAGHVHIGDHV  153 (265)
T ss_dssp             ------CSCCCEEEECSSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSC
T ss_pred             ------cCCCCeEEECCCeEECCceEECcccccCCCceEEccCcEEeeeeEEcccEEECCCcEEcCCcEECCCcEECCCe
Confidence                  12224899999999999999987654   369999999999999999999999999999999999999999999


Q ss_pred             EECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhh
Q 025890          184 TLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI  227 (246)
Q Consensus       184 ~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~  227 (246)
                      |||++++|.++++|+++++|+++|+|++|+|+++++.|+||+.+
T Consensus       154 ~Ig~~a~V~~~v~Ig~~~~i~~~svV~~dvp~~~~~~G~pa~~~  197 (265)
T 4e6u_A          154 IVGGNSGIHQFCKIDSYSMIGGASLILKDVPAYVMASGNPAHAF  197 (265)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECSBBCTTEEEEETTEEEE
T ss_pred             EEcCCCEECCCcEECCCCEEcCCCEEcccCCCCeEEEccCCEEe
Confidence            99999999999999999999999999999999999999999875

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0

Probab=100.00  E-value=5.4e-32  Score=224.12  Aligned_cols=180  Identities=24%  Similarity=0.329  Sum_probs=140.8

Q ss_pred             CcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEE-eccEECCCcEECCCeEECCCCceeEEcCCCceeecCcc-
Q 025890           39 GAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQL-  116 (246)
Q Consensus        39 ~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~-  116 (246)
                      .|.|++++.|++++.|+++|+|++++.||++++|++++.| .++.||++|.|++++.|+..+..+..        .... 
T Consensus        10 ~a~I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~~~~~~~~--------~g~~~   81 (266)
T 3r0s_A           10 SAVIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGARILSDTTIGDHSRVFSYAIVGDIPQDISY--------KEEQK   81 (266)
T ss_dssp             TCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEEEECCSCSCC--------C----
T ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCeEEeCCcEECCCcEEccCceeccCCccccc--------cCCcC
Confidence            3333333444444444444444444555555555555555 35677788889999998654322110        1111 


Q ss_pred             cceEECCCcEECcccEEcCCCc---cCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECC
Q 025890          117 LNARIGNHVEIGANSCIDRGSW---RDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRD  193 (246)
Q Consensus       117 ~~~~Ig~~~~ig~~~~i~~~~~---~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~  193 (246)
                      ..+.||+++.|+++++|..+..   ..+.||+++.++.++.+.+++.||++++++.++.+.++++||++|+||++++|.+
T Consensus        82 ~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~  161 (266)
T 3r0s_A           82 SGVVIGKNATIREFATINSGTAKGDGFTRIGDNAFIMAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGLTPIHQ  161 (266)
T ss_dssp             CEEEECTTCEECTTCEEECCCTTTTSEEEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred             ceEEECCCCEECCceEecCCcccCCccEEECCCceeCCcceEccccccCCCeEECCCceecCCeEECCCcEEccCCEECC
Confidence            3899999999999999997654   3499999999999999999999999999999999999999999999999999999


Q ss_pred             CcEECCCCEEccCcEEeccCCCCCeEEccCchh
Q 025890          194 HVSIASKVRLAANSCVFKDITEPGDYGGFPAVP  226 (246)
Q Consensus       194 ~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~  226 (246)
                      +++||++++|+++|+|++|+||++++.|+||+.
T Consensus       162 ~v~Ig~~a~Vg~~s~V~~dvp~~~~~~G~Pa~~  194 (266)
T 3r0s_A          162 FVKVGEGCMIAGASALSQDIVPFCLAEGNRASI  194 (266)
T ss_dssp             TCEECTTCEECSSCBBCSCBCTTEEEEEBTEEE
T ss_pred             CcEECCCCEEccCCeEecccCCCeEEeccCcEE
Confidence            999999999999999999999999999999987

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A*

Probab=100.00  E-value=1.2e-31  Score=221.20  Aligned_cols=180  Identities=26%  Similarity=0.363  Sum_probs=140.8

Q ss_pred             cEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEE-eccEECCCcEECCCeEECCCCceeEEcCCCceeecCc-cc
Q 025890           40 AIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQ-LL  117 (246)
Q Consensus        40 a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~-~~  117 (246)
                      |.|++++.|++++.|+++|+|++++.||++|+|++++.| .++.||++|.|++++.|+..++.+..        ..+ ..
T Consensus         7 a~I~~~a~ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~--------~g~~~~   78 (259)
T 3hsq_A            7 AIIDPKAELHESVEVGPYSIIEGNVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAVIGVMPQDLGF--------NQQLLT   78 (259)
T ss_dssp             CEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTEEECSSCEECTTCEEEECCSCTTC--------CTTSCC
T ss_pred             cEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcEEcCCcEECCCcEECCCCEECCCcccccc--------cCccCC
Confidence            333333334444444444444444444455555555555 24777888888999988654432210        111 23


Q ss_pred             ceEECCCcEECcccEEcCCCc--cCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCc
Q 025890          118 NARIGNHVEIGANSCIDRGSW--RDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHV  195 (246)
Q Consensus       118 ~~~Ig~~~~ig~~~~i~~~~~--~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~  195 (246)
                      .+.||+++.|+++++|..+..  ..+.||+++.++.++.+++++.||++++++.++.+.++++||++|+||++++|.+++
T Consensus        79 ~v~IG~~~~Ig~~~~I~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v  158 (259)
T 3hsq_A           79 KTVIGDHNIFREYSNIHKGTKEDSPTVIGNKNYFMGNSHVGHDCILGNNNILTHGAVLAGHVTLGNFAFISGLVAVHQFC  158 (259)
T ss_dssp             CEEECSSCEECTTCEEECCSBTTBCEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECSSEEECTTC
T ss_pred             cEEECCCcEECCCCEECCCccCCCcEEECCCcEEcCCcEECCCcEECCccEEcCCceECCccEECCCcEEeCCCEECCCC
Confidence            899999999999999987654  479999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCCEEccCcEEeccCCCCCeEEccCchhh
Q 025890          196 SIASKVRLAANSCVFKDITEPGDYGGFPAVPI  227 (246)
Q Consensus       196 ~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~  227 (246)
                      +||++++|+++|+|++|+|+++++.|+||+.+
T Consensus       159 ~Ig~~~~Vg~~s~V~~dvp~~~~~~G~pa~~~  190 (259)
T 3hsq_A          159 FVGDYSMVAGLAKVVQDVPPYSTVDGNPSTVV  190 (259)
T ss_dssp             EECTTCEECSSEEECSBBCTTEEEETTTTEEE
T ss_pred             EECCCCEECCCCEEcccCCCCcEEeccCcEEE
Confidence            99999999999999999999999999999875

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A

Probab=100.00  E-value=1.6e-31  Score=220.95  Aligned_cols=190  Identities=27%  Similarity=0.399  Sum_probs=160.1

Q ss_pred             ECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEE-eccEECCCcEECCCeEECCCCceeEEcCCC
Q 025890           30 IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHG  108 (246)
Q Consensus        30 i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~  108 (246)
                      |++++.|.+.+.|++++.|+++++|+++|.|++++.||++|+|++++.| .++.||++|.|++++.|+..+..+.     
T Consensus         2 I~~~~~I~p~a~I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~~~~-----   76 (262)
T 2qia_A            2 IDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLK-----   76 (262)
T ss_dssp             BCTTCEECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCSCTT-----
T ss_pred             cCCCCeECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEECCCcEECCCCEEecceEECcCCcccc-----
Confidence            3455556666666666777777777777777777888888888888888 4789999999999999975432211     


Q ss_pred             ceeecCcccceEECCCcEECcccEEcCCCcc---CeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEE
Q 025890          109 NMLKKPQLLNARIGNHVEIGANSCIDRGSWR---DTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTL  185 (246)
Q Consensus       109 ~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~---~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~I  185 (246)
                         .......+.||+++.|+++++|..+...   ++.||+++.++.++.+.+++.||++++++.++.+.++++||++|+|
T Consensus        77 ---~~g~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~Ig~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Ig~~~~I  153 (262)
T 2qia_A           77 ---YAGEPTRVEIGDRNRIRESVTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAII  153 (262)
T ss_dssp             ---CCSCCCEEEECSSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEE
T ss_pred             ---ccCCccceEECCCceeCCCCEEcCCccCCCCcCEECCCcEEeeeeEECCCCEECCCeEECCcccccCCcEECCCcEE
Confidence               0112237899999999999999986542   5999999999999999999999999999999999999999999999


Q ss_pred             CcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhh
Q 025890          186 GGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI  227 (246)
Q Consensus       186 g~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~  227 (246)
                      |+++.|.++++||++++|+++|+|++|+|+++++.|+|++.+
T Consensus       154 g~~~~I~~~v~Ig~~~~ig~~s~V~~~v~~~~~~~G~pa~~~  195 (262)
T 2qia_A          154 GGMTAVHQFCIIGAHVMVGGCSGVAQDVPPYVIAQGNHATPF  195 (262)
T ss_dssp             CTTCEECTTCEECTTCEECSSCEECSBBCTTEEEEEBTEEEE
T ss_pred             ccCCEECCCCEECCCCEEccCCEECCcCCCCeEEeccCceEe
Confidence            999999999999999999999999999999999999999876

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1

Probab=100.00  E-value=1.9e-31  Score=221.20  Aligned_cols=184  Identities=29%  Similarity=0.406  Sum_probs=149.9

Q ss_pred             EcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEe-ccEECCCcEECCCeEECCCCceeEEcCCCceeecC
Q 025890           36 IEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKP  114 (246)
Q Consensus        36 I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~-~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~  114 (246)
                      |.+.|.|++++.|++++.|+++|.|++++.||++|+|++++.|. ++.||++|.|++++.|+..+....        ...
T Consensus         4 I~p~a~I~~~a~Ig~~~~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~~~Ig~~~~~~~--------~~g   75 (270)
T 1j2z_A            4 IAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLK--------YKG   75 (270)
T ss_dssp             BCTTCEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSS--------CCS
T ss_pred             cCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcEEeCCeEEcCCCEEEeeeEECcCCcccc--------ccC
Confidence            34444444555555555556666666666666666666666663 688889999999999976432211        112


Q ss_pred             cccceEECCCcEECcccEEcCCCc---cCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEE
Q 025890          115 QLLNARIGNHVEIGANSCIDRGSW---RDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAV  191 (246)
Q Consensus       115 ~~~~~~Ig~~~~ig~~~~i~~~~~---~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v  191 (246)
                      ....+.||+++.|+++++|..+..   ..+.||+++.++.++.+.+++.||++++++.++.+.++++||++|+||++++|
T Consensus        76 ~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~v~Igd~~~Ig~~a~V  155 (270)
T 1j2z_A           76 EYSELIIGEDNLIREFCMINPGTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAI  155 (270)
T ss_dssp             CCCEEEECSSCEECTTCEECCCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEE
T ss_pred             CccceEECCCCEECCCeEEcCCeecCCccEEECCCcEECcccccCCCcEECCCcEEcCCccccCccEECCCeEEecCCEE
Confidence            224799999999999999998754   25999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEECCCCEEccCcEEeccCCCCCeEEccCchhh
Q 025890          192 RDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI  227 (246)
Q Consensus       192 ~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~  227 (246)
                      .++++||++++|+++|+|++|+||++++.|+||+.+
T Consensus       156 ~~~v~IG~~a~Ig~~s~V~~dvp~~~~~~G~pa~~~  191 (270)
T 1j2z_A          156 HQFVRIAKGCMIAGKSALGKDVPPYCTVEGNRAFIR  191 (270)
T ss_dssp             CTTCEECTTCEECTTCEECSBBCTTEEEETTBTEEE
T ss_pred             CCCcEeCCceEEecCcEecccCCCCeEEecCCcEEe
Confidence            999999999999999999999999999999999887

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis}

Probab=100.00  E-value=3e-31  Score=221.54  Aligned_cols=187  Identities=28%  Similarity=0.375  Sum_probs=156.1

Q ss_pred             CcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEE-eccEECCCcEECCCeEECCCCceeEEcCCCcee
Q 025890           33 TVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNML  111 (246)
Q Consensus        33 ~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~  111 (246)
                      .+.|+++|.|++++.|++++.|+++|+|++++.||+++.|++++.| .++.||++|.|++++.|+..+..+..       
T Consensus        22 ~~~I~p~a~I~~~a~ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~-------   94 (283)
T 4eqy_A           22 MSRIHPTAIIEPGAQLHETVEVGPYAIVGSNVTIGARTTIGSHSVIEGHTTIGEDNRIGHYASVGGRPQDMKY-------   94 (283)
T ss_dssp             -CCBCTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEECSEEEECSSCEECTTEEEEECCCCTTC-------
T ss_pred             CcccCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEEcCCcEECCCCccccc-------
Confidence            3445566666666666677777777777777777777777777777 46889999999999999754322111       


Q ss_pred             ecCcccceEECCCcEECcccEEcCCCc---cCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcC
Q 025890          112 KKPQLLNARIGNHVEIGANSCIDRGSW---RDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGR  188 (246)
Q Consensus       112 ~~~~~~~~~Ig~~~~ig~~~~i~~~~~---~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~  188 (246)
                       ......+.||+++.|+++++|..+..   ..+.||+++.++.++.+.+++.||++++++.++.+.++++||++|+||++
T Consensus        95 -~g~~~~v~IG~~~~Ig~~~~I~~g~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~v~i~~~~~i~~~v~Igd~~~Ig~~  173 (283)
T 4eqy_A           95 -KDEPTRLVIGDRNTIREFTTIHTGTVQDAGVTTLGDDNWIMAYVHIGHDCRVGSHVVLSSNAQMAGHVEIGDWAIVGGM  173 (283)
T ss_dssp             -CCCCCEEEECSSCEECTTEEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTT
T ss_pred             -cCCCceEEECCCcccCcceeEccceecCCCceEECCCcEECceeEEcCCcEECCCcEECCCceEcCCcEECCCeEEecC
Confidence             11223799999999999999997654   34999999999999999999999999999999999999999999999999


Q ss_pred             cEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhh
Q 025890          189 VAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI  227 (246)
Q Consensus       189 ~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~  227 (246)
                      ++|.++++|+++++|+++|+|++|+|+++++.|+||+.+
T Consensus       174 a~V~~~v~Ig~~~vvg~~s~V~~dvp~~~~~~G~pa~~~  212 (283)
T 4eqy_A          174 SGVHQYVRIGAHSMLGGASALVQDIPPFVIAAGNKAEPH  212 (283)
T ss_dssp             CEECTTCEECTTCEECTTCEECSBBCTTEEEETBTTEEE
T ss_pred             CEEcCCeEECCCcEECCCCeEecccCCCcEEeccCcEEe
Confidence            999999999999999999999999999999999999865

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*

Probab=99.96  E-value=7.3e-29  Score=220.12  Aligned_cols=179  Identities=19%  Similarity=0.266  Sum_probs=157.5

Q ss_pred             eeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCcee
Q 025890           23 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGF  102 (246)
Q Consensus        23 ~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~  102 (246)
                      .+++++.+++++.|+++|.|.+++.||+++.|+++|.|. ++.||+++.|++++.|.++.||++|.|++++.|.+     
T Consensus       264 ~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~~~~Ig~~~~ig~~~~i~~-----  337 (459)
T 4fce_A          264 DLRGELTHGRDITIDTNVIIEGHVILGDRVRIGTGCVLK-NCVIGDDSEISPYTVLEDARLDANCTVGPFARLRP-----  337 (459)
T ss_dssp             EEEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEE-SCEECTTCEECSSCEEESCEECTTCEECSSEEECT-----
T ss_pred             EEeCcEEECCCcEECCCeeeccceEECCCCEECCCCEEe-ccEECCCCEECCCcEEeCCEECCCCEECCccEECC-----
Confidence            355667788888888888888888889999999999997 59999999999999999999999999999999975     


Q ss_pred             EEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEec-------
Q 025890          103 FVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAG-------  175 (246)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~-------  175 (246)
                                     .+.||+++.|++++.+.     ++.+++++.++..+.+ .++.||+++.++.++.+.+       
T Consensus       338 ---------------~~~ig~~~~Ig~~~~i~-----~~~i~~~~~i~~~~~i-~~~~Ig~~~~ig~~~~i~~~~~~~~~  396 (459)
T 4fce_A          338 ---------------GAELAEGAHVGNFVEIK-----KARLGKGSKAGHLSYL-GDAEIGAGVNIGAGTITCNYDGANKF  396 (459)
T ss_dssp             ---------------TCEECTTCEEEEEEEEE-----EEEECTTCEEEEEEEE-EEEEECTTCEECTTCEEECBCSSCBC
T ss_pred             ---------------CcEECCCcEECCCeEEe-----eeEEcCCCEECCceEE-CCeEECCCCEECCCCEEeccccccCC
Confidence                           88999999999999996     4788898888888877 4577777777777776654       


Q ss_pred             ceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhhH
Q 025890          176 SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIH  228 (246)
Q Consensus       176 ~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~  228 (246)
                      +++||++||||++++|.++++||++++|+++|+|++|+|+++++.|+|++.++
T Consensus       397 ~v~Ig~~~~IG~~~~I~~gv~Ig~~~~igagsvV~~~v~~~~~~~G~p~~~~~  449 (459)
T 4fce_A          397 KTIIGDDVFVGSDTQLVAPVTVANGATIGAGTTVTRDVAENELVISRVKQVHI  449 (459)
T ss_dssp             CEEECTTCEECTTCEEESSEEECTTCEECTTCEECSCBCTTCEECCCCCCCCC
T ss_pred             CCEECCCeEEcCCCEEcCCcEECCCCEECCCCEEccccCCCCEEEecccccch
Confidence            69999999999999999999999999999999999999999999998886544

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*

Probab=99.96  E-value=6.6e-29  Score=220.23  Aligned_cols=180  Identities=23%  Similarity=0.311  Sum_probs=153.6

Q ss_pred             eeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCcee
Q 025890           23 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGF  102 (246)
Q Consensus        23 ~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~  102 (246)
                      .+++++.+++++.|++++.|++++.||+++.|+++|.|. ++.||++|.|++++.|.++.||++|.|++++.|..     
T Consensus       261 ~i~~~~~ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~-~~~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~-----  334 (456)
T 2v0h_A          261 DLRGTLEHGKDVEIDVNVIIEGNVKLGDRVKIGTGCVLK-NVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRP-----  334 (456)
T ss_dssp             EEEEEEEECSSCEECSSEEEEEEEEECTTCEECTTCEEE-EEEECTTCEECSSCEEEEEEECTTCEECSSEEECT-----
T ss_pred             EEcCceEECCCCEEcCCcEEcCCcEECCCCEECCCCEEE-eEEEeCCCEEcCCeEEccCcCCCCcEECCccEECC-----
Confidence            445556666677777777777777777777777777775 77789999999999998899999999999999975     


Q ss_pred             EEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEec-------
Q 025890          103 FVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAG-------  175 (246)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~-------  175 (246)
                                     .+.||+++.|++++.+.     ++.+++++.++..+.+ .++.||++|+|+.++.+..       
T Consensus       335 ---------------~~~ig~~~~ig~~~~i~-----~~~i~~~~~i~~~~~~-~~~~Ig~~v~Ig~~~~i~~~~~~~~~  393 (456)
T 2v0h_A          335 ---------------GAELAAETHVGNFVEIK-----KSTVGKGSKVNHLTYV-GDSEIGSNCNIGAGVITCNYDGANKF  393 (456)
T ss_dssp             ---------------TCEECTTCEEEEEEEEE-----SCEECTTCEEEEEEEE-ESEEECTTCEECTTCEEEECSSSSCC
T ss_pred             ---------------CCEECCCCEECCCCEEe-----ccEECCCCEeccceee-cCcEECCCcEECCceEEeccccccCC
Confidence                           78999999999999986     4678888888877766 4678888888888877765       


Q ss_pred             ceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhhHH
Q 025890          176 SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHE  229 (246)
Q Consensus       176 ~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~  229 (246)
                      +++||++|+||++++|.++++||++++|+++|+|++|+|+++++.|+||+.+++
T Consensus       394 ~v~Ig~~~~Ig~~~~i~~~v~Ig~~~~ig~~s~v~~~v~~~~~~~G~pa~~~~~  447 (456)
T 2v0h_A          394 KTIIGDDVFVGSDTQLVAPVKVANGATIGAGTTITRDVGENELVITRVAQRHIQ  447 (456)
T ss_dssp             CEEECSSCEECTTCEEEESEEECTTCEECTTCEECSCBCTTCEECCCCCCCCCT
T ss_pred             CcEECCCCEECCCCEEcCCcEECCCCEECCCCEECCCcCCCCEEEccCceehhh
Confidence            899999999999999999999999999999999999999999999999999864

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*

Probab=99.96  E-value=5.4e-28  Score=215.10  Aligned_cols=177  Identities=23%  Similarity=0.295  Sum_probs=145.6

Q ss_pred             eccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeE
Q 025890           24 FHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFF  103 (246)
Q Consensus        24 i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~  103 (246)
                      +++++.|++++.|++++.|.+++.|++++.|+++|.|+ ++.||++|.|+ ++.|.++.||++|.|++++.|.+      
T Consensus       271 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~-~~~ig~~~~i~-~~~i~~~~Ig~~~~Ig~~~~i~~------  342 (468)
T 1hm9_A          271 IDIDVEIAPEVQIEANVILKGQTKIGAETVLTNGTYVV-DSTIGAGAVIT-NSMIEESSVADGVTVGPYAHIRP------  342 (468)
T ss_dssp             ECTTCEECTTCEECSSCEEESSCEECTTCEECTTCEEE-SCEECTTCEEC-SCEEESCEECTTCEECSSCEECS------
T ss_pred             ECCCcEECCCCEECCCcEECCCCEECCCCEECCCCEEe-ccEEeCCcEEE-EEEEeccccCCCcEECCceEEec------
Confidence            44445555555555555555555566666666666664 56778888888 88888899999999999999975      


Q ss_pred             EcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEec-------c
Q 025890          104 VDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAG-------S  176 (246)
Q Consensus       104 ~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~-------~  176 (246)
                                    ++.||+++.|++++.+.     ++.|++++.++..+.+ .++.||+++.|+.++.+..       .
T Consensus       343 --------------~~~ig~~~~Ig~~~~i~-----~~~Ig~~~~i~~~~~i-~~~~Ig~~~~Ig~~~~i~~~~~~~~~~  402 (468)
T 1hm9_A          343 --------------NSSLGAQVHIGNFVEVK-----GSSIGENTKAGHLTYI-GNCEVGSNVNFGAGTITVNYDGKNKYK  402 (468)
T ss_dssp             --------------SCEECTTCEEEEEEEEE-----SCEECTTCEEEEEEEE-ESEEECTTCEECTTCEEECBCSSCBCC
T ss_pred             --------------CcEECCccEECCCcEEe-----eeEEcCCcEeCCceEE-ccccccCCcEECCCcEEecCcCccCCC
Confidence                          78999999999999886     4789999998888777 4788888888888877765       7


Q ss_pred             eEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhhH
Q 025890          177 ATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIH  228 (246)
Q Consensus       177 ~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~  228 (246)
                      ++||++|+||++++|.+++.||++++|+++|+|++|+|+++++.|+|++.++
T Consensus       403 ~~Ig~~~~Ig~~~~i~~~v~Ig~~~~i~~~s~v~~~v~~~~~~~G~pa~~~~  454 (468)
T 1hm9_A          403 TVIGDNVFVGSNSTIIAPVELGDNSLVGAGSTITKDVPADAIAIGRGRQINK  454 (468)
T ss_dssp             EEECTTCEECTTCEEESSCEECTTCEECTTCEECSCBCTTCEECCSCCCCCC
T ss_pred             cEECCCeEECCCCEEeCCcEECCCCEECCCCEECCCCCCCCEEEcCcceeeh
Confidence            9999999999999999999999999999999999999999999999999865

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A*

Probab=99.94  E-value=1.4e-26  Score=182.74  Aligned_cols=160  Identities=23%  Similarity=0.197  Sum_probs=100.4

Q ss_pred             EEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEe-ccEECCCcEECCCeEECCCCceeEEcCCCceeec
Q 025890           35 LIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKK  113 (246)
Q Consensus        35 ~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~-~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~  113 (246)
                      .|+++++|++++.|++++.|++++.|.+++.||+++.|++++.|. ++.||++|.|++++.|..                
T Consensus         5 ~I~p~a~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~Ig~~~~I~~~~~IG~~~~I~~~~~I~~----------------   68 (192)
T 3mqg_A            5 TIHPTAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQNNVSVYD----------------   68 (192)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSSCEECTTCEECT----------------
T ss_pred             EECCCcEECCCCEECCCCEECCCCEECCCcEECCCCEECCCEEECCceEECCCcEEcCCcEEeC----------------
Confidence            344444444444444444444444444444455555555444442 255556666666655543                


Q ss_pred             CcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECC
Q 025890          114 PQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRD  193 (246)
Q Consensus       114 ~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~  193 (246)
                          ++.||+++.+++++.+.....                  ....+....       ...+++||++||||.+++|.+
T Consensus        69 ----~~~Ig~~~~ig~~~~~~~~~~------------------~~~~~~~~~-------~~~~~~Ig~~v~IG~~~~I~~  119 (192)
T 3mqg_A           69 ----NVFLEDDVFCGPSMVFTNVYN------------------PRAAIERKS-------EYRDTIVRQGATLGANCTVVC  119 (192)
T ss_dssp             ----TEEECTTCEECTTCBCCSCSS------------------CBTTBCCGG-------GCCCEEECTTCEECTTCEECT
T ss_pred             ----CCEECCCCEECCceEEecccC------------------Ccccccccc-------ccCCcEECCCcEECCCCEECC
Confidence                555566666555554432100                  000111111       124589999999999999999


Q ss_pred             CcEECCCCEEccCcEEeccCCCCCeEEccCchhhHHHHHHhhhhhh
Q 025890          194 HVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIR  239 (246)
Q Consensus       194 ~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~  239 (246)
                      ++.||++++|+++|+|++++|+++++.|+|||.++.+.+..+++.+
T Consensus       120 g~~Ig~~~~IgagsvV~~~vp~~~v~~G~PAk~i~~~~~~~~~~~~  165 (192)
T 3mqg_A          120 GATIGRYAFVGAGAVVNKDVPDFALVVGVPARQIGWMSRHGEQLDL  165 (192)
T ss_dssp             TCEECTTCEECTTCEECSCBCTTEEEETTTTEEEEEBCTTSCBCSC
T ss_pred             CCEECCCCEEcCCCEECcccCCCCEEEccCCEEEEeeccccccccc
Confidence            9999999999999999999999999999999999877665555443

>4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A

Probab=99.93  E-value=2.5e-24  Score=184.87  Aligned_cols=172  Identities=23%  Similarity=0.363  Sum_probs=146.5

Q ss_pred             cEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEE-eccEECCCcEECCCeEECCCCceeEEcCCCceee
Q 025890           34 VLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLK  112 (246)
Q Consensus        34 ~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~  112 (246)
                      +.|.+.+.|++++.|++++.|+++++|++++.||++++|+++|.| .++.||++|.|++++.|+.               
T Consensus       103 ~~i~p~a~I~~~a~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~---------------  167 (357)
T 4e79_A          103 TGIESTARIHPSAVISETAYIGHYVVIGENCVVGDNTVIQSHTKLDDNVEVGKDCFIDSYVTITG---------------  167 (357)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECT---------------
T ss_pred             CeeCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEEec---------------
Confidence            456666666666777777777777777777777777777777777 4788899999999999864               


Q ss_pred             cCcccceEECCCcEECcccEEcCCC---------------ccCeEECCCCEECCCCEEc----cCcEECCCcEEccceeE
Q 025890          113 KPQLLNARIGNHVEIGANSCIDRGS---------------WRDTVIGDHSKIDNLVQIG----HNVAIGKSCMLCGQVGI  173 (246)
Q Consensus       113 ~~~~~~~~Ig~~~~ig~~~~i~~~~---------------~~~~~ig~~~~v~~~~~i~----~~~~Ig~~~~i~~~~~~  173 (246)
                           ++.||+++.|+++++|....               ...+.||+++.++.++.|.    +++.||+++.++.++.+
T Consensus       168 -----~~~IG~~~~I~~g~~Ig~dgfg~~~~~g~~~~i~~~g~v~IGd~v~IG~~~~I~~g~~~~t~Ig~~~~I~~~v~I  242 (357)
T 4e79_A          168 -----SSKLRDRVRIHSSTVIGGEGFGFAPYQGKWHRIAQLGSVLIGNDVRIGSNCSIDRGALDNTILEDGVIIDNLVQI  242 (357)
T ss_dssp             -----TCEECSSCEECTTCEESCCCCCEEEETTEEEECCCCCCEEECTTCEECTTCEECCCSSSCEEECTTCEECTTCEE
T ss_pred             -----ccEEEeEeeccCCeEECcccCcccccCCceeeccccCcEEEcCCcEEccccEEeccccCCccccCCcccCCCccc
Confidence                 88999999999999986421               1378999999999999997    88999999999999999


Q ss_pred             ecceEECCCeEECcCcEECCCcEECCCCEEccCcEEec--cCCCCCeEEccCch
Q 025890          174 AGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFK--DITEPGDYGGFPAV  225 (246)
Q Consensus       174 ~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~--~~~~~~~~~g~p~~  225 (246)
                      ..+++||++|+|++++.+.++++||++++|++++.+.+  ++++++++.|.|+.
T Consensus       243 ~~~v~IG~~~~i~~~~~i~~~v~IG~~~~Ig~~s~V~~~~~Ig~~~vv~g~s~V  296 (357)
T 4e79_A          243 AHNVHIGSNTAIAAKCGIAGSTKIGKNCILAGACGVAGHLSIADNVTLTGMSMV  296 (357)
T ss_dssp             CTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSSEEECTTCEE
T ss_pred             CCCeEECCCCEECCCCEECCCcEECCCCEECcCCEECCCeEECCCCEEeecCEE
Confidence            99999999999999999999999999999999999994  78999998886653

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}

Probab=99.93  E-value=1.6e-24  Score=185.15  Aligned_cols=172  Identities=24%  Similarity=0.372  Sum_probs=146.9

Q ss_pred             CcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEE-eccEECCCcEECCCeEECCCCceeEEcCCCcee
Q 025890           33 TVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNML  111 (246)
Q Consensus        33 ~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~  111 (246)
                      .+.|.+.+.|++++.|++++.|+++++|++++.||++|+|++++.| .++.||++|.|++++.|+.              
T Consensus        97 ~~~i~~~a~i~~~a~ig~~~~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~--------------  162 (341)
T 3eh0_A           97 AQNIAPSAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYH--------------  162 (341)
T ss_dssp             CCSBCTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECT--------------
T ss_pred             cCccCCCcEECCCcEECCCCEECCCcEECCCcEECCCcEECCCcEECCCCEECCCcEECCCcEECC--------------
Confidence            3456666666667777777777777777777788888888888888 7788999999999999964              


Q ss_pred             ecCcccceEECCCcEECcccEEcCCC---------------ccCeEECCCCEECCCCEEc----cCcEECCCcEEcccee
Q 025890          112 KKPQLLNARIGNHVEIGANSCIDRGS---------------WRDTVIGDHSKIDNLVQIG----HNVAIGKSCMLCGQVG  172 (246)
Q Consensus       112 ~~~~~~~~~Ig~~~~ig~~~~i~~~~---------------~~~~~ig~~~~v~~~~~i~----~~~~Ig~~~~i~~~~~  172 (246)
                            ++.||+++.|++++.|....               ..++.||+++.++.++.+.    +++.||+++.++.++.
T Consensus       163 ------~~~IG~~~~I~~g~~I~~~~fg~~~~~~~~~~i~~~g~v~IGd~v~Ig~~~~I~~~~~~~~~Ig~~~~I~~~v~  236 (341)
T 3eh0_A          163 ------EIQIGQNCLIQSGTVVGADGFGYANDRGNWVKIPQIGRVIIGDRVEIGACTTIDRGALDDTIIGNGVIIDNQCQ  236 (341)
T ss_dssp             ------TCEECSSCEECTTCEEEECCSCEEEETTEEEECCCCCCEEECSSCEECTTCEEECCSSSCEEECTTCEECTTCE
T ss_pred             ------CCEECCccEEcCCcEECCccccccccCCccccccccCcEEECCCcEECCccEeeccccCceEeccceEECCCCE
Confidence                  88999999999999986521               1468999999999999996    7899999999999999


Q ss_pred             EecceEECCCeEECcCcEECCCcEECCCCEEccCcEEec--cCCCCCeEEccCc
Q 025890          173 IAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFK--DITEPGDYGGFPA  224 (246)
Q Consensus       173 ~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~--~~~~~~~~~g~p~  224 (246)
                      +..+++||++|+|+.++.+.++++||++++|++++.+.+  ++++++++.+.+.
T Consensus       237 I~~~v~IG~~~~i~~~~~i~g~v~IG~~~~Ig~~s~V~~~v~Ig~~~vv~a~s~  290 (341)
T 3eh0_A          237 IAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGHMEICDKVTVTGMGM  290 (341)
T ss_dssp             ECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEECSSEEECSSEEECTTCE
T ss_pred             EeCCcEECCCCEECCCCEECCCcEECCCcEEcCCCEECCCCEECCCCEEeeCCE
Confidence            999999999999999999999999999999999999998  7889988876643

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis}

Probab=99.93  E-value=3.7e-24  Score=178.59  Aligned_cols=200  Identities=26%  Similarity=0.309  Sum_probs=141.2

Q ss_pred             CCceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEE-------------eccEECCC
Q 025890           20 GGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-------------SNCIIGDS   86 (246)
Q Consensus        20 ~~~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I-------------~~~~Ig~~   86 (246)
                      ..+.+++++.|++++.|++++.|++++.|++++.|+++++|.+++.||++|.|++++.|             ..+.||++
T Consensus        27 p~a~I~~~a~ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~v~IG~~  106 (283)
T 4eqy_A           27 PTAIIEPGAQLHETVEVGPYAIVGSNVTIGARTTIGSHSVIEGHTTIGEDNRIGHYASVGGRPQDMKYKDEPTRLVIGDR  106 (283)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEECSEEEECSSCEECTTEEEEECCCCTTCCCCCCEEEECSS
T ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEEcCCcEECCCCccccccCCCceEEECCC
Confidence            33444444455555555555555555555555556666666666777777777777777             26888999


Q ss_pred             cEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcE
Q 025890           87 CIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCM  166 (246)
Q Consensus        87 ~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~  166 (246)
                      |.|++++.|.....             .....+.||+++.|++++.+.    +++.||+++.++.++.+.+++.||++++
T Consensus       107 ~~Ig~~~~I~~g~~-------------~~~~~~~IG~~~~I~~~~~I~----~~~~IG~~v~i~~~~~i~~~v~Igd~~~  169 (283)
T 4eqy_A          107 NTIREFTTIHTGTV-------------QDAGVTTLGDDNWIMAYVHIG----HDCRVGSHVVLSSNAQMAGHVEIGDWAI  169 (283)
T ss_dssp             CEECTTEEEECCCT-------------TTTSEEEECSSCEECTTCEEC----TTCEECSSCEECTTCEECTTCEECTTCE
T ss_pred             cccCcceeEcccee-------------cCCCceEECCCcEECceeEEc----CCcEECCCcEECCCceEcCCcEECCCeE
Confidence            99999999964211             001259999999999999997    4699999999999999999999999999


Q ss_pred             EccceeEecceEECCCeEECcCcEECCCcEECCCCEEccC-cEEec-cCCCCCeEEccCchhhHHHHHHhhhhhh
Q 025890          167 LCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN-SCVFK-DITEPGDYGGFPAVPIHEWRRQVANQIR  239 (246)
Q Consensus       167 i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~-s~v~~-~~~~~~~~~g~p~~~~~~~~~~~~~~~~  239 (246)
                      |+.++.+.++++||+++.|+++++|.++  |++++++... +.+.+ +. .+-...+.+...++.+.+.++.+.+
T Consensus       170 Ig~~a~V~~~v~Ig~~~vvg~~s~V~~d--vp~~~~~~G~pa~~~~~n~-~gl~r~~~~~~~~~~l~~~~~~~~~  241 (283)
T 4eqy_A          170 VGGMSGVHQYVRIGAHSMLGGASALVQD--IPPFVIAAGNKAEPHGINV-EGLRRRGFSPDAISALRSAYRILYK  241 (283)
T ss_dssp             ECTTCEECTTCEECTTCEECTTCEECSB--BCTTEEEETBTTEEEEECH-HHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred             EecCCEEcCCeEECCCcEECCCCeEecc--cCCCcEEeccCcEEeeccc-ccceecCCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999986  6677766543 22221 10 0000124556666666666555543

>4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A*

Probab=99.93  E-value=3.1e-24  Score=177.49  Aligned_cols=169  Identities=26%  Similarity=0.366  Sum_probs=132.6

Q ss_pred             CCCceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEE-------------eccEECC
Q 025890           19 NGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-------------SNCIIGD   85 (246)
Q Consensus        19 ~~~~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I-------------~~~~Ig~   85 (246)
                      ...+.+++++.|++++.|++++.|++++.|++++.|+++++|.+++.||++|.|++++.|             ..+.||+
T Consensus        11 ~p~a~i~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~~IG~   90 (265)
T 4e6u_A           11 HSTAIIDPSAVIASDVQIGPYCIIGPQVTIGAGTKLHSHVVVGGFTRIGQNNEIFQFASVGEVCQDLKYKGEETWLEIGN   90 (265)
T ss_dssp             CTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSSEEECSSCEECTTCEEEECCCCTTCCSCCCEEEECS
T ss_pred             CCCCEECCCCEECCCCEECCCeEECCCCEECCCCEEcCCcEEeCCcEECCCCEEcCCcEECCccccccccCCCCeEEECC
Confidence            334455555666666666666666666666666666666666667777777778777777             3688899


Q ss_pred             CcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCc
Q 025890           86 SCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSC  165 (246)
Q Consensus        86 ~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~  165 (246)
                      ++.|++++.|....+             .....+.||+++.|++++.+.    +++.||+++.++.++.+..+++||+++
T Consensus        91 ~~~Ig~~~~I~~g~~-------------~~~~~~~IG~~~~I~~~~~I~----~~~~Ig~~~~i~~~~~i~~~v~Igd~~  153 (265)
T 4e6u_A           91 NNLIREHCSLHRGTV-------------QDNALTKIGSHNLLMVNTHIA----HDCIVGDHNIFANNVGVAGHVHIGDHV  153 (265)
T ss_dssp             SCEECTTCEEECCCT-------------TTTSEEEECSSCEECTTCEEC----TTCEECSSCEECTTCEECTTCEECSSC
T ss_pred             CeEECCceEECcccc-------------cCCCceEEccCcEEeeeeEEc----ccEEECCCcEEcCCcEECCCcEECCCe
Confidence            999999998863211             011269999999999999997    469999999999999999999999999


Q ss_pred             EEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccC
Q 025890          166 MLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN  206 (246)
Q Consensus       166 ~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~  206 (246)
                      +|+.++.+.++++||+++.|+++++|.++  +++++++...
T Consensus       154 ~Ig~~a~V~~~v~Ig~~~~i~~~svV~~d--vp~~~~~~G~  192 (265)
T 4e6u_A          154 IVGGNSGIHQFCKIDSYSMIGGASLILKD--VPAYVMASGN  192 (265)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECSB--BCTTEEEEET
T ss_pred             EEcCCCEECCCcEECCCCEEcCCCEEccc--CCCCeEEEcc
Confidence            99999999999999999999999999986  5777766544

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana}

Probab=99.92  E-value=9.8e-24  Score=177.74  Aligned_cols=172  Identities=25%  Similarity=0.385  Sum_probs=130.6

Q ss_pred             CcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEE-eccEECCCcEECCCeEECCCCceeEEcCCCcee
Q 025890           33 TVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNML  111 (246)
Q Consensus        33 ~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~  111 (246)
                      .+.|++.|.|++++.|++++.|+++|+|++++.||++|.|++++.| .++.||++|.|++++.|+.+.+           
T Consensus         7 ~~~I~p~A~I~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~d~~-----------   75 (305)
T 3t57_A            7 EVLIHPSAVVHPNAVIGKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFGNTELGESCVLMTGAVVGDELP-----------   75 (305)
T ss_dssp             --CBCTTSEECTTSEECTTCEECTTCEECTTEEECTTCEECTTCEECSSEEECTTCEECTTCEECCSSS-----------
T ss_pred             CCeECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCcEEccCcEeccCCC-----------
Confidence            3445555555555666666666666666667777777777777777 4688888888888888875432           


Q ss_pred             ecCcccceEECCCcEECcccEEcCCC---------ccCeEECCCCEECCCCEEc------cCcEECCCcEEccceeEecc
Q 025890          112 KKPQLLNARIGNHVEIGANSCIDRGS---------WRDTVIGDHSKIDNLVQIG------HNVAIGKSCMLCGQVGIAGS  176 (246)
Q Consensus       112 ~~~~~~~~~Ig~~~~ig~~~~i~~~~---------~~~~~ig~~~~v~~~~~i~------~~~~Ig~~~~i~~~~~~~~~  176 (246)
                           +.+.||+++.|++++.|....         .....||+++.++.++.+.      +.+.||++++++.++.+..+
T Consensus        76 -----g~~~IG~~~~Ig~~a~Ig~~~q~~~~~~~~~~~i~IG~~~~I~~~~~I~~g~~~~~~~~IG~~~~I~~~~~I~~~  150 (305)
T 3t57_A           76 -----GYTFIGCNNIIGHHAVVGVKCQDLKYKHGDECFLCIGNNNEIREFCSIHRSSKPSDKTVIGDNNLIMGSCHIAHD  150 (305)
T ss_dssp             -----EEEEECSSCEECTTCEEEECCCCTTCCTTCCEEEEECSSCEECTTCEEECCSSTTCCEEECSSCEECTTCEECTT
T ss_pred             -----CceEECCceEECCccEeCccccccceecCCCceEEECCCcccCceEEEeecccccCccEEccCccccceEEEeCc
Confidence                 268899999999999885321         1347888888888888884      56789999999999999999


Q ss_pred             eEECCCeEECcCcEECCCcEECCCCEEccCcEEecc--CCCCCeEE
Q 025890          177 ATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKD--ITEPGDYG  220 (246)
Q Consensus       177 ~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~--~~~~~~~~  220 (246)
                      ++||++|+++.++.+.+++.|+++++|++++.+.+.  +.+++++.
T Consensus       151 ~~IG~~~~i~~~~~i~g~v~Igd~~~Ig~~~~V~~~v~IG~~a~ig  196 (305)
T 3t57_A          151 CKIGDRNIFANNTLLAGHVVVEDNTHTAGASVVHQFCHIGSFAFIG  196 (305)
T ss_dssp             CEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEEC
T ss_pred             eEeCCceEECCCcccCCCCEECCceEEcCCCEEcCCeEECCCCEEc
Confidence            999999999999999999999999999999999876  56666554

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}

Probab=99.92  E-value=1.5e-23  Score=180.83  Aligned_cols=171  Identities=23%  Similarity=0.322  Sum_probs=141.8

Q ss_pred             cEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEE-eccEECCCcEECCCeEECCCCceeEEcCCCceee
Q 025890           34 VLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLK  112 (246)
Q Consensus        34 ~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~  112 (246)
                      ..|.+.+.|.+++.|++++.|+++++|++++.||++++|++++.| .++.||++|.|++++.|+.               
T Consensus       120 ~~i~p~a~i~~~a~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~v~IG~~~~I~~~~~I~~---------------  184 (372)
T 3pmo_A          120 AGIHPTAIVAADAEVDPSASVGAYAVIESGARIGAGVSIGAHCVIGARSVIGEGGWLAPRVTLYH---------------  184 (372)
T ss_dssp             SEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECT---------------
T ss_pred             cccCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcccCCCcEEEe---------------
Confidence            345555666666666666666666666667777777777777777 4688888888888888875               


Q ss_pred             cCcccceEECCCcEECcccEEcCCC---------------ccCeEECCCCEECCCCEEc----cCcEECCCcEEccceeE
Q 025890          113 KPQLLNARIGNHVEIGANSCIDRGS---------------WRDTVIGDHSKIDNLVQIG----HNVAIGKSCMLCGQVGI  173 (246)
Q Consensus       113 ~~~~~~~~Ig~~~~ig~~~~i~~~~---------------~~~~~ig~~~~v~~~~~i~----~~~~Ig~~~~i~~~~~~  173 (246)
                           .+.||+++.|+++++|....               ..++.||+++.++.++.+.    +++.||+++.++.++.+
T Consensus       185 -----~~~IG~~v~I~~g~~Ig~dgfg~~~~~g~~~~i~~~g~v~IGd~v~IGa~~~I~~g~~~~t~IG~~~~I~~~v~I  259 (372)
T 3pmo_A          185 -----DVTIGARVSIQSGAVIGGEGFGFANEKGVWQKIAQIGGVTIGDDVEIGANTTIDRGALSDTLIGNGVKLDNQIMI  259 (372)
T ss_dssp             -----TEEECTTCEECTTCEEEECCCCEEEETTEEEECCCCCCEEECSSCEECTTCEEECCSSSCEEECTTCEECTTCEE
T ss_pred             -----eeEECceeeccCCcEEecCcccccccCCcceeccccCCeEECCCCEECCCcEEccCcccceEECCCCEECCCCEE
Confidence                 78999999999999986421               1378999999999999997    88999999999999999


Q ss_pred             ecceEECCCeEECcCcEECCCcEECCCCEEccCcEEecc--CCCCCeEEccCc
Q 025890          174 AGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKD--ITEPGDYGGFPA  224 (246)
Q Consensus       174 ~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~--~~~~~~~~g~p~  224 (246)
                      ..+++||++|+|+.++.+.++++||++++|++++.+.++  +++++++.+.+.
T Consensus       260 ~~~v~IG~~~~I~~~~~I~~~v~IG~~~~Ig~~a~V~~~v~Ig~~~vI~a~s~  312 (372)
T 3pmo_A          260 AHNVQIGDHTAMAACVGISGSAKIGRHCMLAGGVGLVGHIEICDNVFVTGMTM  312 (372)
T ss_dssp             CTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECSSCEECSSEEECTTCE
T ss_pred             CCCCEECCCCEECCCCEECCCCEECCCeEEeCCCEECCCCEECCCCEEeeCCE
Confidence            999999999999999999999999999999999999985  788888877665

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A*

Probab=99.92  E-value=1.8e-23  Score=173.54  Aligned_cols=167  Identities=28%  Similarity=0.393  Sum_probs=140.3

Q ss_pred             cEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEec---------------cEECCCcEECCC
Q 025890           28 ACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSN---------------CIIGDSCIIHNG   92 (246)
Q Consensus        28 ~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~---------------~~Ig~~~~I~~~   92 (246)
                      +.+.+++.|++++.|++++.|++++.|+++|.|++++.||++|.|++++.|..               +.||++|.|+++
T Consensus         3 ~~i~~~~~I~~~a~I~~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~   82 (273)
T 3fs8_A            3 NNISKSAIIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYNDRINKKHPLIIGENALIRTE   82 (273)
T ss_dssp             CEECTTCEECTTCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEEEECCTTHHHHTCCCCCCEEECTTCEECTT
T ss_pred             cccCCCeEECCCcEECCCCEECCCcEECCCCEECCCCEECCCcEECCCcEeCCccccccccccccccceEECCCCEECCC
Confidence            45666667777777777777777777777788877888888888888888733               899999999999


Q ss_pred             eEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEcccee
Q 025890           93 VCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVG  172 (246)
Q Consensus        93 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~  172 (246)
                      +.|..                    .+.||+++.|++++.|..    ++.|++++.++.++.+.+++.||+++.++.++.
T Consensus        83 ~~i~~--------------------~~~Ig~~~~Ig~~~~I~~----~~~Ig~~~~Ig~~~~i~~~~~IG~~~~I~~~~~  138 (273)
T 3fs8_A           83 NVIYG--------------------DTIIGDNFQTGHKVTIRE----NTKIGNNVKIGTLSDIQHHVYIGNYVNIHSNVF  138 (273)
T ss_dssp             CEEES--------------------SCEECTTCEECSSCEECS----SCEECSSCEECTTCEECSSCEECSSCEECTTCE
T ss_pred             CEEeC--------------------CCEECCCCEECCceEECC----CCEECCCCEECccceeCCceEECCceEECCCCE
Confidence            99964                    789999999999999984    589999999999999999999999999999999


Q ss_pred             EecceEECCCeEECcCcEECC----------CcEECCCCEEccCcEEecc--CCCCCe
Q 025890          173 IAGSATIGDYVTLGGRVAVRD----------HVSIASKVRLAANSCVFKD--ITEPGD  218 (246)
Q Consensus       173 ~~~~~~Ig~~~~Ig~~~~v~~----------~~~ig~~~~v~~~s~v~~~--~~~~~~  218 (246)
                      +..+++|++++++++++.+..          ++.|+++++|++++++.+.  +.++++
T Consensus       139 I~~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~v~Ig~~~~IG~~~~I~~g~~IG~~~~  196 (273)
T 3fs8_A          139 VGEKSIIKDFVWLFPHVVLTNDPTPPSNELLGVTIELFAVIAARSVVLPGIHINEDAL  196 (273)
T ss_dssp             ECTTCEECTTCEECTTCEECCCSSSSCSCCCCCEECTTCEECTTCEECTTCEECTTCE
T ss_pred             ECCCceeCCceeecCceEecCCCCCcccccCCcEECCCeEEcCCCEEcCCCEECCCCE
Confidence            999999999999999988876          6899999999999988764  344444

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0

Probab=99.92  E-value=1.9e-23  Score=172.83  Aligned_cols=168  Identities=22%  Similarity=0.281  Sum_probs=135.6

Q ss_pred             CCCceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEE--------------eccEEC
Q 025890           19 NGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL--------------SNCIIG   84 (246)
Q Consensus        19 ~~~~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I--------------~~~~Ig   84 (246)
                      ...+.+++++.|++++.|++++.|++++.|++++.|++++.|.+++.||++|.|++++.|              ..+.||
T Consensus         8 ~p~a~I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~~~~~~~~~g~~~~~v~IG   87 (266)
T 3r0s_A            8 HPSAVIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGARILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIG   87 (266)
T ss_dssp             CTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEEEECCSCSCCC----CEEEEC
T ss_pred             CCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCeEEeCCcEECCCcEEccCceeccCCccccccCCcCceEEEC
Confidence            344556666666666666666666666667777777777777777788888888888888              478899


Q ss_pred             CCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCC
Q 025890           85 DSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKS  164 (246)
Q Consensus        85 ~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~  164 (246)
                      ++|.|++++.|.....             .....+.||+++.|++++.+.    +++.||+++.++.++.+..++.||++
T Consensus        88 ~~~~Ig~~~~I~~~~~-------------~~~~~~~IG~~~~I~~~~~I~----~~~~IG~~~~i~~~~~i~~~v~Igd~  150 (266)
T 3r0s_A           88 KNATIREFATINSGTA-------------KGDGFTRIGDNAFIMAYCHIA----HDCLLGNNIILANNATLAGHVELGDF  150 (266)
T ss_dssp             TTCEECTTCEEECCCT-------------TTTSEEEECTTCEECTTCEEC----TTCEECSSCEECTTCEECTTCEECTT
T ss_pred             CCCEECCceEecCCcc-------------cCCccEEECCCceeCCcceEc----cccccCCCeEECCCceecCCeEECCC
Confidence            9999999999864211             011259999999999999997    46999999999999999999999999


Q ss_pred             cEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEcc
Q 025890          165 CMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA  205 (246)
Q Consensus       165 ~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~  205 (246)
                      ++++.++.+.++++||+++.|++++.|.++  ++++++++.
T Consensus       151 ~~Ig~~a~V~~~v~Ig~~a~Vg~~s~V~~d--vp~~~~~~G  189 (266)
T 3r0s_A          151 TVVGGLTPIHQFVKVGEGCMIAGASALSQD--IVPFCLAEG  189 (266)
T ss_dssp             CEECTTCEECTTCEECTTCEECSSCBBCSC--BCTTEEEEE
T ss_pred             cEEccCCEECCCcEECCCCEEccCCeEecc--cCCCeEEec
Confidence            999999999999999999999999999986  677877654

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1

Probab=99.92  E-value=3.4e-23  Score=171.53  Aligned_cols=200  Identities=18%  Similarity=0.176  Sum_probs=152.5

Q ss_pred             CCCceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEE-------------eccEECC
Q 025890           19 NGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-------------SNCIIGD   85 (246)
Q Consensus        19 ~~~~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I-------------~~~~Ig~   85 (246)
                      ...+.+++++.|++++.|+++|.|++++.|+++++|+++|.|.+++.||++|.|++++.|             ..+.||+
T Consensus         5 ~p~a~I~~~a~Ig~~~~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~~~Ig~~~~~~~~~g~~~~~~IG~   84 (270)
T 1j2z_A            5 AKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGE   84 (270)
T ss_dssp             CTTCEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEECS
T ss_pred             CCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcEEeCCeEEcCCCEEEeeeEECcCCccccccCCccceEECC
Confidence            344556666666677777777777777777777777777777777888888888888888             4678999


Q ss_pred             CcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCc
Q 025890           86 SCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSC  165 (246)
Q Consensus        86 ~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~  165 (246)
                      ++.|++++.|.....             .....+.||+++.|++++.|.    +++.||+++.++.++.+.+++.||+++
T Consensus        85 ~~~I~~~~~I~~~~~-------------~~~~~~~IG~~~~I~~~~~I~----~~~~IG~~~~I~~~~~i~~~v~Igd~~  147 (270)
T 1j2z_A           85 DNLIREFCMINPGTE-------------GGIKKTLIGDKNLLMAYVHVA----HDCVIGSHCILANGVTLAGHIEIGDYV  147 (270)
T ss_dssp             SCEECTTCEECCCCT-------------TTTSEEEECSSCEECTTCEEC----TTCEECSSCEECTTCEECTTCEECSSC
T ss_pred             CCEECCCeEEcCCee-------------cCCccEEECCCcEECcccccC----CCcEECCCcEEcCCccccCccEECCCe
Confidence            999999999974211             000268999999999999997    569999999999999999999999999


Q ss_pred             EEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccC-cEEeccCCCCCeEEccCchhhHHHHHHhhhhh
Q 025890          166 MLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN-SCVFKDITEPGDYGGFPAVPIHEWRRQVANQI  238 (246)
Q Consensus       166 ~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~-s~v~~~~~~~~~~~g~p~~~~~~~~~~~~~~~  238 (246)
                      +|+.++.+.++++||++++|+++++|.++  +++++++... +.+. .++...+..+.|...++.+.+.++.+.
T Consensus       148 ~Ig~~a~V~~~v~IG~~a~Ig~~s~V~~d--vp~~~~~~G~pa~~~-~~n~~g~r~~~~~~~~~~~~~~~~~~~  218 (270)
T 1j2z_A          148 NIGGLTAIHQFVRIAKGCMIAGKSALGKD--VPPYCTVEGNRAFIR-GLNRHRMRQLLESKDIDFIYALYKRLF  218 (270)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECSB--BCTTEEEETTBTEEE-EECHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred             EEecCCEECCCcEeCCceEEecCcEeccc--CCCCeEEecCCcEEe-cccchhhhcCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999887  6688777543 3322 111111134677777777766666653

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*

Probab=99.92  E-value=5.2e-24  Score=191.07  Aligned_cols=181  Identities=22%  Similarity=0.323  Sum_probs=143.1

Q ss_pred             CcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEE-----eccEECCCcEECCCeEECCCCce
Q 025890           27 SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-----SNCIIGDSCIIHNGVCIGQDGFG  101 (246)
Q Consensus        27 ~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I-----~~~~Ig~~~~I~~~~~i~~~~~~  101 (246)
                      ..++..++.|++++.|.+++.+.+++.|+.+|++++++.+.+ +.+..++.+     ..+.+++++.+++++.+.+    
T Consensus       277 ~~~i~~dv~IG~dv~I~~~v~i~g~~~Ig~~~~I~~~~~i~~-~~i~~~~~i~~~~i~~~~ig~~~~ig~~~~i~~----  351 (501)
T 3st8_A          277 TTWIDVDVTIGRDTVIHPGTQLLGRTQIGGRCVVGPDTTLTD-VAVGDGASVVRTHGSSSSIGDGAAVGPFTYLRP----  351 (501)
T ss_dssp             GEEECTTCEECTTCEECSSEEEETTCEECTTCEECSSCEEEE-EEECTTCEECSEEEEEEEECTTCEECSSEEECT----
T ss_pred             cccccCceEECCcceecceeeecCccccccceEEeeceeecC-ceEecCCEEEeecccccccccccccCCceeecC----
Confidence            457777888888888888888877788888888877776644 333333333     5677889999999999875    


Q ss_pred             eEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEe------c
Q 025890          102 FFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIA------G  175 (246)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~------~  175 (246)
                                      ++.|++++.||.++.+.     ++.||+++.++..+++ .++.||++|.|+.++.+.      +
T Consensus       352 ----------------~~~i~~~v~IG~~v~ik-----~s~Ig~gskI~~~~~i-~d~~Ig~~v~IG~g~i~~n~dg~~~  409 (501)
T 3st8_A          352 ----------------GTALGADGKLGAFVEVK-----NSTIGTGTKVPHLTYV-GDADIGEYSNIGASSVFVNYDGTSK  409 (501)
T ss_dssp             ----------------TCEECTTCEEEETEEEE-----SCEECTTCEEEESCEE-ESEEECSSCEECTTCEEECBCSSSB
T ss_pred             ----------------CcEEccccccCCeEEEc-----cceecCCcEEecccee-cCceEcCCCEECCCEEEEcccCCcc
Confidence                            78999999999999887     4688888888777665 445555555555555443      3


Q ss_pred             -ceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCe-EEccCchhhHHHHHHh
Q 025890          176 -SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGD-YGGFPAVPIHEWRRQV  234 (246)
Q Consensus       176 -~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~-~~g~p~~~~~~~~~~~  234 (246)
                       .++||++|+||+++.+.++++||++|.|+++|+|++|+|++++ +.|.|++.++.|.+++
T Consensus       410 ~~t~IGd~~~iG~~~~l~~~v~Ig~~~~i~ags~v~~dvp~~~l~~~~~~~~~~~~w~~~~  470 (501)
T 3st8_A          410 RRTTVGSHVRTGSDTMFVAPVTIGDGAYTGAGTVVREDVPPGALAVSAGPQRNIENWVQRK  470 (501)
T ss_dssp             CCEEECTTCEECTTCEEESSEEECTTCEECTTCEECSCBCTTCEECCCCCCCCCTTHHHHH
T ss_pred             cCCEECCCcEECCCCEEcCCcEECCCCEECCCCEECcccCCCCeEEeccCceeccchhhhc
Confidence             3999999999999999999999999999999999999999997 5679999999886544

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A*

Probab=99.91  E-value=5.5e-23  Score=169.41  Aligned_cols=199  Identities=17%  Similarity=0.236  Sum_probs=147.1

Q ss_pred             CceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEE--------------eccEECCC
Q 025890           21 GGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL--------------SNCIIGDS   86 (246)
Q Consensus        21 ~~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I--------------~~~~Ig~~   86 (246)
                      .+.+++++.|++++.|++++.|++++.|++++.|++++.|.+++.||+++.|++++.|              ..+.||++
T Consensus         6 ~a~I~~~a~ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~v~IG~~   85 (259)
T 3hsq_A            6 TAIIDPKAELHESVEVGPYSIIEGNVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAVIGVMPQDLGFNQQLLTKTVIGDH   85 (259)
T ss_dssp             TCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTEEECSSCEECTTCEEEECCSCTTCCTTSCCCEEECSS
T ss_pred             CcEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcEEcCCcEECCCcEECCCCEECCCcccccccCccCCcEEECCC
Confidence            4456666666666666666666666777777777777777777777888888888877              35788888


Q ss_pred             cEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcE
Q 025890           87 CIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCM  166 (246)
Q Consensus        87 ~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~  166 (246)
                      |.|++++.|.....              ....+.||+++.|+++++|.    +++.||+++.++.++.+.+++.||++++
T Consensus        86 ~~Ig~~~~I~~~~~--------------~~~~~~IG~~~~I~~~~~I~----~~~~IG~~~~i~~~~~i~~~v~Igd~~~  147 (259)
T 3hsq_A           86 NIFREYSNIHKGTK--------------EDSPTVIGNKNYFMGNSHVG----HDCILGNNNILTHGAVLAGHVTLGNFAF  147 (259)
T ss_dssp             CEECTTCEEECCSB--------------TTBCEEECSSCEECTTCEEC----TTCEECSSCEECTTCEECTTCEECSSCE
T ss_pred             cEECCCCEECCCcc--------------CCCcEEECCCcEEcCCcEEC----CCcEECCccEEcCCceECCccEECCCcE
Confidence            88888888864221              11278999999999999998    5699999999999999999999999999


Q ss_pred             EccceeEecceEECCCeEECcCcEECCCcEECCCCEEccC-cEEec-cCCCCCeEEccCchhhHHHHHHhhhhhhc
Q 025890          167 LCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN-SCVFK-DITEPGDYGGFPAVPIHEWRRQVANQIRS  240 (246)
Q Consensus       167 i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~-s~v~~-~~~~~~~~~g~p~~~~~~~~~~~~~~~~~  240 (246)
                      ++.++.+.++++||+++.|+++++|.++  +++++++... +.+.+ +.. +....+.+...++.|.+.++.+.+.
T Consensus       148 Ig~~a~V~~~v~Ig~~~~Vg~~s~V~~d--vp~~~~~~G~pa~~~~~~~~-g~~r~~~~~~~~~~l~~~~~~~~~~  220 (259)
T 3hsq_A          148 ISGLVAVHQFCFVGDYSMVAGLAKVVQD--VPPYSTVDGNPSTVVGLNSV-GMKRAGFSPEVRNAIKHAYKVIYHS  220 (259)
T ss_dssp             ECSSEEECTTCEECTTCEECSSEEECSB--BCTTEEEETTTTEEEEECHH-HHHHTTCCHHHHHHHHHHHHHHHSS
T ss_pred             EeCCCEECCCCEECCCCEECCCCEEccc--CCCCcEEeccCcEEEeeccc-ceeeCCCCHHHHHHHHHHHHHHHHc
Confidence            9999999999999999999999999975  5777766543 23221 110 0001234556666666665555443

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*

Probab=99.91  E-value=5e-24  Score=185.99  Aligned_cols=186  Identities=21%  Similarity=0.200  Sum_probs=121.2

Q ss_pred             EEeechhhhhhhcccCCCceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEE-eccE
Q 025890            4 YVSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCI   82 (246)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I-~~~~   82 (246)
                      +|.++.+++.+..+.....  .....-.....|.+++.+.+++.|++++.|++++.|.+++.||++|.|++++.| .++.
T Consensus       205 ~~~dI~t~edl~~a~~~l~--~~~~~~~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~  282 (401)
T 2ggo_A          205 YWMDIGKPWNIIDVNKWAL--DNLVFSQNLGNVEDNVKIKGKVIIEEDAEIKSGTYIEGPVYIGKGSEIGPNSYLRPYTI  282 (401)
T ss_dssp             CEEECCSHHHHHHHHHHHH--HHTCCCEECSEECSSCEEESCEEECTTCEECTTCEEESSEEECTTCEECSSCEECTTEE
T ss_pred             eEEcCCCHHHHHHHHHHHH--HhcccccccceeCCCCEEcCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCcE
Confidence            5888888877643322100  000000011234444455555555555555555555555566666666666665 3566


Q ss_pred             ECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEc------
Q 025890           83 IGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIG------  156 (246)
Q Consensus        83 Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~------  156 (246)
                      ||++|.|++++.|+                     ++.|++++.|++++.+.     ++.||+++.++.++.+.      
T Consensus       283 Ig~~~~ig~~~~i~---------------------~~~i~~~~~i~~~~~i~-----~~~Ig~~~~Ig~~~~i~~~~~~~  336 (401)
T 2ggo_A          283 LVEKNKIGASVEVK---------------------ESVIMEGSKIPHLSYVG-----DSVIAEDVNFGAGTLIANLRFDE  336 (401)
T ss_dssp             ECSSCEEEETCEEE---------------------SEEECTTCEEEESCEEE-----SCEECTTCEECTTCEECCSCTTC
T ss_pred             ECCCCEECCCCEEe---------------------cCEEcCCcEECCCceEc-----ceEECCCcEECCCcEEcCcccCC
Confidence            66777777776663                     66777777777776664     35666666666666664      


Q ss_pred             --cCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeE
Q 025890          157 --HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDY  219 (246)
Q Consensus       157 --~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~  219 (246)
                        +++.+++++.+...  ...+++||++||||++++|.++++||++++|+++|+|++|+|+++++
T Consensus       337 ~~~~~~i~~~~~~~~~--~~~~v~Ig~~~~Ig~~~~I~~gv~Ig~~~vi~~gsvv~~~vp~~~~v  399 (401)
T 2ggo_A          337 KEVKVNVKGKRISSGR--RKLGAFIGGHVRTGINVTILPGVKIGAYARIYPGAVVNRDVGYGEFF  399 (401)
T ss_dssp             SCCEEEETTEEEECSC--SSCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTCEE
T ss_pred             CceeEEECCceEEecc--cccCcEECCCeEECCCcEEcCCcEECCCcEECCCCeEccccCCCcEE
Confidence              44555555555433  23579999999999999999999999999999999999999999875

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A

Probab=99.91  E-value=1.3e-22  Score=167.46  Aligned_cols=198  Identities=19%  Similarity=0.252  Sum_probs=139.2

Q ss_pred             CceeccCcEECCCcEEcCCcEECc------CcEECCCcEECCCCEECCCcEECCCCEECCceEEe-------------cc
Q 025890           21 GGIFHQSACIDSTVLIEVGAIVHS------KAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-------------NC   81 (246)
Q Consensus        21 ~~~i~~~~~i~~~~~I~~~a~I~~------~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~-------------~~   81 (246)
                      ...+++.+.+.+++.|++++.|++      ++.|++++.|+++|+|.+++.||++|.|++++.|.             .+
T Consensus         5 ~~~I~p~a~I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~~~~~~g~~~~~   84 (262)
T 2qia_A            5 SAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRV   84 (262)
T ss_dssp             TCEECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCSCTTCCSCCCEE
T ss_pred             CCeECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEECCCcEECCCCEEecceEECcCCccccccCCccce
Confidence            344555555555555555555554      44555555555555555566667777777777773             57


Q ss_pred             EECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEE
Q 025890           82 IIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAI  161 (246)
Q Consensus        82 ~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~I  161 (246)
                      .||+++.|++++.|......             ....+.||+++.|++++.|.    +++.||+++.++.++.+.+++.|
T Consensus        85 ~IG~~~~Ig~~~~I~~~~~~-------------~~~~~~IG~~~~Ig~~~~I~----~~~~Ig~~~~i~~~~~i~~~v~I  147 (262)
T 2qia_A           85 EIGDRNRIRESVTIHRGTVQ-------------GGGLTKVGSDNLLMINAHIA----HDCTVGNRCILANNATLAGHVSV  147 (262)
T ss_dssp             EECSSCEECTTCEEECCCTT-------------TTSEEEECSSCEECTTCEEC----TTCEECSSCEECTTCEECTTCEE
T ss_pred             EECCCceeCCCCEEcCCccC-------------CCCcCEECCCcEEeeeeEEC----CCCEECCCeEECCcccccCCcEE
Confidence            88899999999888642100             00258999999999999997    46999999999999999999999


Q ss_pred             CCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCC-eEEccCchhhHHHHHHhhhh
Q 025890          162 GKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPG-DYGGFPAVPIHEWRRQVANQ  237 (246)
Q Consensus       162 g~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~-~~~g~p~~~~~~~~~~~~~~  237 (246)
                      |++++++.++.+.++++||++|.|+++++|.++  +++++++.........+.... ...+.|...++.|.+.+..+
T Consensus       148 g~~~~Ig~~~~I~~~v~Ig~~~~ig~~s~V~~~--v~~~~~~~G~pa~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~  222 (262)
T 2qia_A          148 DDFAIIGGMTAVHQFCIIGAHVMVGGCSGVAQD--VPPYVIAQGNHATPFGVNIEGLKRRGFSREAITAIRNAYKLI  222 (262)
T ss_dssp             CTTCEECTTCEECTTCEECTTCEECSSCEECSB--BCTTEEEEEBTEEEEEECHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             CCCcEEccCCEECCCCEECCCCEEccCCEECCc--CCCCeEEeccCceEecccccccEecCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999976  678887655432221111111 12456666766666655544

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A*

Probab=99.91  E-value=1.8e-22  Score=174.68  Aligned_cols=158  Identities=23%  Similarity=0.315  Sum_probs=115.1

Q ss_pred             eccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEE------CCCCEECCceEEe------------------
Q 025890           24 FHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTI------GQSTNIGFNVALS------------------   79 (246)
Q Consensus        24 i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~i------g~~~~I~~~~~I~------------------   79 (246)
                      +++++.|.+++.|++++.|++++.|+++++|+++|.|.+++.|      |++|.|++++.|.                  
T Consensus       145 I~~~~~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~Ig~~~~~~~~~~~~~~~~i~  224 (374)
T 2iu8_A          145 IEPYAVVCQHAHVGSACHIGSGSVIGAYSTVGEHSYIHPRVVIRERVSIGKRVIIQPGAVIGSCGFGYVTSAFGQHKHLK  224 (374)
T ss_dssp             ECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSEEECTTCEECTTCEEEEECSCEEEETTTEEEECC
T ss_pred             ECCCCEECCCCEECCCCEECCCcEECCCcEECCceeeCCCcEEcccceECCCCEECCCCEECcCCcccccccCCceeEee
Confidence            3344444445555555555555555555555555555544444      4444444455441                  


Q ss_pred             ---ccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEc
Q 025890           80 ---NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIG  156 (246)
Q Consensus        80 ---~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~  156 (246)
                         .+.||++|.|++++.|....+                ..+.||+++.|...+.|.    +++.||+++.+..++.+.
T Consensus       225 ~~g~v~Ig~~v~IG~~~~I~~~~~----------------~~t~ig~~~~i~~~v~I~----~~v~IG~~~~i~~~~~v~  284 (374)
T 2iu8_A          225 HLGKVIIEDDVEIGANTTIDRGRF----------------KHSVVREGSKIDNLVQIA----HQVEVGQHSMIVAQAGIA  284 (374)
T ss_dssp             CCCCEEECTTCEECTTCEEEECSS----------------SCEEECTTCEECTTCEEC----TTCEECTTCEECTTCEEC
T ss_pred             eeccEEECCCCEECCCcEEccCcc----------------cceeECCCcEECCccccC----CccEECCCCEEccCcccC
Confidence               266777777777777754322                368899999999998888    468999999999999999


Q ss_pred             cCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEE
Q 025890          157 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL  203 (246)
Q Consensus       157 ~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v  203 (246)
                      +++.||++|+++.++.+.++++||++|.|++++.|.+++  ++++++
T Consensus       285 ~~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~I~a~s~V~~~v--~~~~~~  329 (374)
T 2iu8_A          285 GSTKIGNHVIIGGQAGITGHICIADHVIMMAQTGVTKSI--TSPGIY  329 (374)
T ss_dssp             TTCEECSSCEECTTCEECSSCEECTTEEECTTCEECSCB--CSCEEE
T ss_pred             CCcEECCCeEEecCcEECCCcccCCCcEEccCceeeccc--CCCcEE
Confidence            999999999999999999999999999999999999874  455544

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A*

Probab=99.89  E-value=2.5e-23  Score=165.66  Aligned_cols=65  Identities=22%  Similarity=0.272  Sum_probs=58.0

Q ss_pred             eEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhhHHHHHHhhh
Q 025890          172 GIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVAN  236 (246)
Q Consensus       172 ~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~~~~~~~~  236 (246)
                      ...++++||++|+||++++|.++++|+++++|+++|+|++++|+++++.|+||+.++.+.+...+
T Consensus       130 ~~~~~v~IG~~v~IG~~~~I~~gv~Ig~~~~Ig~gsvV~~~v~~~~v~~G~Pa~~i~~~~~~~~~  194 (205)
T 3vbi_A          130 VKTGKVILKKHVIIGAHSIIFPNVVIGEGVAVGAMSMVKESLDDWYIYVGVPVRKIKARKRKIVE  194 (205)
T ss_dssp             CEECCEEECTTCEECTTCEECSSCEECTTCEECTTCEECSCBCTTEEEETTTTEEEEECCCHHHH
T ss_pred             eccCCEEECCCCEECCCCEEcCCCEECCCCEEcCCCEECCccCCCeEEEccCCEEeeechhhhHH
Confidence            33567999999999999999999999999999999999999999999999999998876544433

>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A

Probab=99.89  E-value=8.6e-22  Score=166.75  Aligned_cols=188  Identities=16%  Similarity=0.207  Sum_probs=129.7

Q ss_pred             ceecc-CcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCc
Q 025890           22 GIFHQ-SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGF  100 (246)
Q Consensus        22 ~~i~~-~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~  100 (246)
                      ..+++ ++.+.+++.|++++.|++++.|+++++|+++|+|. +++|++++.|++++.|.++.|+++|.|+.++.+....+
T Consensus        59 ~~I~~~~a~I~~~a~I~~~~~I~g~~~Ig~~~~Ig~~~~I~-~~~Ig~~~~I~~~s~I~~s~I~~~~~I~~~~~i~~~s~  137 (334)
T 2pig_A           59 CWIYDENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWID-RADISDGARISDNVTIQSSSVREECAIYGDARVLNQSE  137 (334)
T ss_dssp             CEECCTTCEEETTCEECTTCEEESSCEEESSCEECTTCEEE-SCEEESSCEECTTCEEESCEEESSEEECTTCEEESSCE
T ss_pred             eEEcCCCeEEcCCcEECCCcEEeeeeeECCCcEECCCCEEE-eEEEcCCCEEeCCcEEeccEEcCCeEEecCCEEeCCEE
Confidence            35555 56666677777777777777777778888888886 78888888888888888888888887777777665543


Q ss_pred             ee------------EEcCCCcee------------ecCcccceEECCCcEECcccEEcCCCccCeEECC-----------
Q 025890          101 GF------------FVDEHGNML------------KKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGD-----------  145 (246)
Q Consensus       101 ~~------------~~~~~~~~~------------~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~-----------  145 (246)
                      -+            ..+.++...            ......+++|++++.|++++.+....++..++++           
T Consensus       138 I~~~~~~~~~~~~g~~I~~~a~I~~s~I~~g~~I~~~a~I~~svI~~~a~I~~~a~V~~~~~~~v~I~~~~~I~g~a~V~  217 (334)
T 2pig_A          138 ILAIQGLTHEHAQILQIYDRATVNHSRIVHQVQLYGNATITHAFIEHRAEVFDFALIEGDKDNNVWICDCAKVYGHARVI  217 (334)
T ss_dssp             EEC--------CCCEEECTTCEEESCEEETTCEECTTCEEESEEECTTCEECTTCEEECCSSCCEEECTTCEECTTCEEE
T ss_pred             EeecceeecccCCCeEECCCCEEeccEEcCCCEEcCCeEEeCcEEcCCCEECCCcEECCceeccEEECCCcEEeeeEEEe
Confidence            21            111221111            1122234555555566666665544322222333           


Q ss_pred             -------------CCEECCCCEEccCcEECCCcEEccceeEec-ceEECCCeEECcCcEECCCcEECCCCEEccCcEEe
Q 025890          146 -------------HSKIDNLVQIGHNVAIGKSCMLCGQVGIAG-SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVF  210 (246)
Q Consensus       146 -------------~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~-~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~  210 (246)
                                   ++.++.++.|.++++|++++.|+.++.+.+ ++.|++.+.||.++.+.+++.|++++.|++++.+.
T Consensus       218 R~~~~~Ei~~i~~~a~I~~~a~I~~nv~Ig~nv~Ig~~~~ia~g~~~i~~~~vIGg~a~I~g~v~Ig~~~~I~~~s~v~  296 (334)
T 2pig_A          218 AGTEEDAIPTLRYSSQVAEHALIEGNCVLKHHVLVGGHAEVRGGPILLDDRVLIEGHACIQGEILIERQVEISGRAAVI  296 (334)
T ss_dssp             CCSSTTCCCEECTTCEECTTCEEESSEEECTTEEECTTCEEESSCEEEESSEEECTTCEEESSEEEESSEEECTTCEEE
T ss_pred             ccCCHHHhhhhhhcceecCCEEECCCCEEcCCCEEeCCcEEcCCCeEECCeEEEcCCcEECcCcEECCCcEECCCcEEE
Confidence                         344446666777888888888888888775 78899999999999999999999999999999986

>3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens}

Probab=99.89  E-value=2.8e-22  Score=158.29  Aligned_cols=49  Identities=18%  Similarity=0.139  Sum_probs=34.1

Q ss_pred             eEECCCeEECcCcEECCCcEECCCCEEccCcEEecc--CCCCCeEEccCch
Q 025890          177 ATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKD--ITEPGDYGGFPAV  225 (246)
Q Consensus       177 ~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~--~~~~~~~~g~p~~  225 (246)
                      +.||++|+|+.+++|.+++.||++|+|+++|+|+++  +|++++++|+|++
T Consensus       103 ~~Ig~~~~Ig~~~~I~~gv~IG~~~~IgagsvV~~~~~Ip~~svv~G~pa~  153 (194)
T 3tv0_A          103 MKMGDNNVIESKAYVGRNVILTSGCIIGACCNLNTFEVIPENTVIYGADCL  153 (194)
T ss_dssp             SEECSSCEECTTCEECTTEEECSSCEECTTCEECCCEEECTTEEEESTTCC
T ss_pred             eeecccceecceeeECCeEEECCCCEECCCCEECCCcEECCCCEEECCCcE
Confidence            566666777777777777777777777777777766  6777777777764

>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A*

Probab=99.86  E-value=6.5e-22  Score=156.18  Aligned_cols=97  Identities=26%  Similarity=0.249  Sum_probs=71.6

Q ss_pred             eEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEE
Q 025890          141 TVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYG  220 (246)
Q Consensus       141 ~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~  220 (246)
                      +.||++|.+++++.|.......+.........+.++++||++||||++++|.++++||++++|+++|+|++|+|+++++.
T Consensus        97 i~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~dvp~~~v~~  176 (195)
T 3nz2_A           97 ITIGDHVLIGPSTQFYTASHSLDYRRRQAWETICKPIVIEDDVWIGGNVVINQGVTIGARSVVAANSVVNQDVPPDTLVG  176 (195)
T ss_dssp             EEECTTCEECTTCEEECEECCSSGGGTTTCCCEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCSSEEEE
T ss_pred             EEECCCCEECCCCEEecCCCCcccccccccceecCCeEECCCCEEcCCCEECCCCEECCCCEECCCCEEccccCCCcEEE
Confidence            34444444444444444444444444444555677899999999999999999999999999999999999999999999


Q ss_pred             ccCchhhHHHHHHhhhh
Q 025890          221 GFPAVPIHEWRRQVANQ  237 (246)
Q Consensus       221 g~p~~~~~~~~~~~~~~  237 (246)
                      |+||+.++.+.+..+.+
T Consensus       177 G~Pa~~i~~~~~~~~~~  193 (195)
T 3nz2_A          177 GTPARILRSLKDPAESM  193 (195)
T ss_dssp             TTTTEEEEECC------
T ss_pred             ccCCEEecccChHhHHh
Confidence            99999999887665544

>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum}

Probab=99.86  E-value=2.2e-21  Score=152.78  Aligned_cols=55  Identities=24%  Similarity=0.225  Sum_probs=48.8

Q ss_pred             eEECCCeEECcCcEECCCcEECCCCEEccCcEEe--ccCCCCCeEEccCchhhHHHH
Q 025890          177 ATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVF--KDITEPGDYGGFPAVPIHEWR  231 (246)
Q Consensus       177 ~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~--~~~~~~~~~~g~p~~~~~~~~  231 (246)
                      ++||++|+||.+++|.+++.|+++++|+++++|.  +++|+++++.|+|++.++++.
T Consensus       113 ~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~gsvV~~~~~i~~~~~v~G~pa~~i~~~~  169 (191)
T 3ixc_A          113 CTLGNNAFVGMGSIVMDRAVMEEGSMLAAGSLLTRGKIVKSGELWAGRPAKFLRMMT  169 (191)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEEEETTEEEEEECC
T ss_pred             CEECCCCEECCCCEEeCCeEECCCCEECCCCEECCCcCcCCCeEEECcCceecccCC
Confidence            7888999999999999999999999999999998  789999999999998887664

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*

Probab=99.85  E-value=9.6e-21  Score=167.70  Aligned_cols=156  Identities=18%  Similarity=0.320  Sum_probs=136.7

Q ss_pred             CcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccc
Q 025890           39 GAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLN  118 (246)
Q Consensus        39 ~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  118 (246)
                      .+.|++++.|++++.|+++|+|++++.||+++.|++++.|.++.||++|.|++++.|.                     .
T Consensus       259 ~~~i~~~~~ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~---------------------~  317 (456)
T 2v0h_A          259 RFDLRGTLEHGKDVEIDVNVIIEGNVKLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLE---------------------D  317 (456)
T ss_dssp             GEEEEEEEEECSSCEECSSEEEEEEEEECTTCEECTTCEEEEEEECTTCEECSSCEEE---------------------E
T ss_pred             ccEEcCceEECCCCEEcCCcEEcCCcEECCCCEECCCCEEEeEEEeCCCEEcCCeEEc---------------------c
Confidence            4566777777788888888888888888999999999999999999999999999996                     7


Q ss_pred             eEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECC-----
Q 025890          119 ARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRD-----  193 (246)
Q Consensus       119 ~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~-----  193 (246)
                      +.||+++.|++++.|..    ++.+|+++.+++++.+ .++.|++++.+...+.+. +++||++|+||+++++..     
T Consensus       318 ~~ig~~~~I~~~~~i~~----~~~ig~~~~ig~~~~i-~~~~i~~~~~i~~~~~~~-~~~Ig~~v~Ig~~~~i~~~~~~~  391 (456)
T 2v0h_A          318 SIVGEKAAIGPFSRLRP----GAELAAETHVGNFVEI-KKSTVGKGSKVNHLTYVG-DSEIGSNCNIGAGVITCNYDGAN  391 (456)
T ss_dssp             EEECTTCEECSSEEECT----TCEECTTCEEEEEEEE-ESCEECTTCEEEEEEEEE-SEEECTTCEECTTCEEEECSSSS
T ss_pred             CcCCCCcEECCccEECC----CCEECCCCEECCCCEE-eccEECCCCEeccceeec-CcEECCCcEECCceEEecccccc
Confidence            89999999999999985    4899999999999999 578899999998888774 699999999999999976     


Q ss_pred             --CcEECCCCEEccCcEEecc--CCCCCeEEc
Q 025890          194 --HVSIASKVRLAANSCVFKD--ITEPGDYGG  221 (246)
Q Consensus       194 --~~~ig~~~~v~~~s~v~~~--~~~~~~~~g  221 (246)
                        +++||++++|++++++.++  +++++.+.+
T Consensus       392 ~~~v~Ig~~~~Ig~~~~i~~~v~Ig~~~~ig~  423 (456)
T 2v0h_A          392 KFKTIIGDDVFVGSDTQLVAPVKVANGATIGA  423 (456)
T ss_dssp             CCCEEECSSCEECTTCEEEESEEECTTCEECT
T ss_pred             CCCcEECCCCEECCCCEEcCCcEECCCCEECC
Confidence              8999999999999999987  677776543

>3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens}

Probab=99.85  E-value=2.7e-20  Score=146.81  Aligned_cols=146  Identities=15%  Similarity=0.225  Sum_probs=86.7

Q ss_pred             CCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeEEcCCCce
Q 025890           31 DSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNM  110 (246)
Q Consensus        31 ~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~  110 (246)
                      .+++.|+++|+|.+++.|+++++||++|+|++++.|..+.        .++.||++|.|++++.|+...+...       
T Consensus        10 ~~~v~I~~~a~I~~~a~I~g~V~IG~~~~I~~~~~I~~~~--------g~i~IG~~~~I~~~~~I~~~~~~~~-------   74 (194)
T 3tv0_A           10 QKSVKIAPGAVVCVESEIRGDVTIGPRTVIHPKARIIAEA--------GPIVIGEGNLIEEQALIINAYPDNI-------   74 (194)
T ss_dssp             --CEEECTTCEECTTSEEESSEEECTTCEECTTCEEEESS--------SCEEECTTCEECTTCEEEECCCSCC-------
T ss_pred             CCCCEECCCCEEcCCCEEeCCCEECCCCEECCCCEEccCC--------CCeEECCCccccCCccccccccccc-------
Confidence            3445555555555555555555555555555444442211        2356777777777777753221100       


Q ss_pred             eecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcE
Q 025890          111 LKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVA  190 (246)
Q Consensus       111 ~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~  190 (246)
                                     .........    .++.||+++.++.++.+ +++.||++++|+.++.+..+++||++|+||++++
T Consensus        75 ---------------~~~~~~~~~----~~~~Ig~~~~i~~~~~i-~~~~Ig~~~~Ig~~~~I~~gv~IG~~~~Igagsv  134 (194)
T 3tv0_A           75 ---------------TPDTEDPEP----KPMIIGTNNVFEVGCYS-QAMKMGDNNVIESKAYVGRNVILTSGCIIGACCN  134 (194)
T ss_dssp             ----------------------------CCEEECSSCEECTTCEE-CCSEECSSCEECTTCEECTTEEECSSCEECTTCE
T ss_pred             ---------------ccccccCcC----CceEECCcceEecceeE-eeeeecccceecceeeECCeEEECCCCEECCCCE
Confidence                           000000000    23444444555555555 4567777777777788888899999999999999


Q ss_pred             ECCCcEECCCCEEccCcEEec
Q 025890          191 VRDHVSIASKVRLAANSCVFK  211 (246)
Q Consensus       191 v~~~~~ig~~~~v~~~s~v~~  211 (246)
                      |.+++.|+++++|.......+
T Consensus       135 V~~~~~Ip~~svv~G~pa~~~  155 (194)
T 3tv0_A          135 LNTFEVIPENTVIYGADCLRR  155 (194)
T ss_dssp             ECCCEEECTTEEEESTTCCEE
T ss_pred             ECCCcEECCCCEEECCCcEEe
Confidence            999999999999977755444

>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli}

Probab=99.85  E-value=1.8e-21  Score=159.62  Aligned_cols=147  Identities=20%  Similarity=0.205  Sum_probs=99.3

Q ss_pred             CcEECCCCEECCceEE-----eccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCC
Q 025890           63 AVTIGQSTNIGFNVAL-----SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGS  137 (246)
Q Consensus        63 ~~~ig~~~~I~~~~~I-----~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~  137 (246)
                      ++.|++++.|...+.+     ..+.||+++.|.+++.|....                  .+.||+++.|++++.|... 
T Consensus        63 ~v~I~~~~~i~~~~~i~~g~~~~v~Ig~~~~I~~~~~i~~g~------------------~v~IG~~~~Ig~~~~I~~~-  123 (252)
T 3jqy_B           63 KLIIEDDVECRWLTVIFRGDNNYVRIHKNSKIKGDIVATKGS------------------KVIIGRRTTIGAGFEVVTD-  123 (252)
T ss_dssp             EEEECTTCEEEEEEEEEESSSCEEEECTTCEEEEEEEEESSC------------------EEEECTTCEECTTCEEECS-
T ss_pred             EEEEcCCcEEecceEEEeCCCCeEEECCCCEECCceEEccCC------------------EEEECCCCEECCCcEEEeC-
Confidence            4455555555554444     345677777777777774321                  6777777777777777631 


Q ss_pred             ccCeEECCCCEECCCCEEccCc--EECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCC
Q 025890          138 WRDTVIGDHSKIDNLVQIGHNV--AIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITE  215 (246)
Q Consensus       138 ~~~~~ig~~~~v~~~~~i~~~~--~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~  215 (246)
                      ..++.||++|.++.++.+....  .+.+.. ........++++||++|+||++++|.++++||++++|+++|+|++|+|+
T Consensus       124 ~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~-~~~~~~~~~~v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV~~~vp~  202 (252)
T 3jqy_B          124 KCNVTIGHDCMIARDVILRASDGHPIFDIH-SKKRINWAKDIIISSYVWVGRNVSIMKGVSVGSGSVIGYGSIVTKDVPS  202 (252)
T ss_dssp             SSEEEECTTCEECSSEEEECSCSSCEEETT-TCBBCCCCCCEEECSSCEECSSEEECTTCEECTTCEECTTCEECSCBCT
T ss_pred             CCCeEECCCCEEcCCcEEecCCCccccccc-ccccccccCCeEEecCcEECCCCEECCCCEECCCCEECCCCEECcccCC
Confidence            0135555555555555442210  000000 0111234456899999999999999999999999999999999999999


Q ss_pred             CCeEEccCchhhHH
Q 025890          216 PGDYGGFPAVPIHE  229 (246)
Q Consensus       216 ~~~~~g~p~~~~~~  229 (246)
                      ++++.|+||+.++.
T Consensus       203 ~~~~~G~Pa~~i~~  216 (252)
T 3jqy_B          203 MCAAAGNPAKIIKR  216 (252)
T ss_dssp             TEEEEETTEEEEEE
T ss_pred             CCEEEccCCEEEcc
Confidence            99999999999886

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=99.84  E-value=2.2e-20  Score=150.18  Aligned_cols=106  Identities=27%  Similarity=0.431  Sum_probs=96.8

Q ss_pred             ceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEE
Q 025890          118 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI  197 (246)
Q Consensus       118 ~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~i  197 (246)
                      .+.||+++.|++++.|..    ++.||+++.+..++.+++++.||++|.+++++.+.++++||++|+||.+++|.++++|
T Consensus       111 ~v~IG~g~~I~~~~~i~~----~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~I  186 (220)
T 4ea9_A          111 SVRLGEGVAVMAGVAINA----DSWIGDLAIINTGAVVDHDCRLGAACHLGPASALAGGVSVGERAFLGVGARVIPGVTI  186 (220)
T ss_dssp             TCEECSSCEECTTCEECT----TCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEE
T ss_pred             CCEECCCCEEcCCCEECC----CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEEcCCcEE
Confidence            567777777777777764    4788899999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEccCcEEeccCCCCCeEEccCchhhH
Q 025890          198 ASKVRLAANSCVFKDITEPGDYGGFPAVPIH  228 (246)
Q Consensus       198 g~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~  228 (246)
                      |++++|+++|+|++|+|+++++.|+||| ++
T Consensus       187 g~~~~igagsvv~~~v~~~~~~~G~Pa~-i~  216 (220)
T 4ea9_A          187 GADTIVGAGGVVVRDLPDSVLAIGVPAK-IK  216 (220)
T ss_dssp             CTTCEECTTCEECSCBCTTCEEETTTTE-EC
T ss_pred             CCCCEECCCCEEccccCCCcEEEEeCCE-Ee
Confidence            9999999999999999999999999999 44

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A*

Probab=99.84  E-value=2.2e-20  Score=152.12  Aligned_cols=96  Identities=28%  Similarity=0.408  Sum_probs=70.2

Q ss_pred             eEECCCCEECCCCEEccCcEECCCcEEccceeEec--------ceEECCCeEECcCcEECCCcEECCCCEEccCcEEecc
Q 025890          141 TVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAG--------SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKD  212 (246)
Q Consensus       141 ~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~--------~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~  212 (246)
                      +.||++|.++.++.+++++.||++|.|+.++.+.+        +++|+++|+||.+++|.+++.||++++|+++++|.++
T Consensus       122 ~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~~~~~Ig~~~~IG~~~~I~~~~~Ig~~~~I~~gsvV~~~  201 (240)
T 3r8y_A          122 AVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAGVIEPPSAKPVIVEDDVVIGANVVVLEGVTVGKGAVVAAGAVVTED  201 (240)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECTTCEECCCCSCTTSCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECSC
T ss_pred             CEECCCCEECCCCEECCCCEECCCcEECCCcEECCCccCCCCCCcEECCCCEECCCCEECCCcEECCCCEECCCCEECCC
Confidence            34444444444444444555555555555555543        4999999999999999999999999999999999999


Q ss_pred             CCCCCeEEccCchhhHHHHHHhhh
Q 025890          213 ITEPGDYGGFPAVPIHEWRRQVAN  236 (246)
Q Consensus       213 ~~~~~~~~g~p~~~~~~~~~~~~~  236 (246)
                      +|+++++.|+||+.++.+.+..+.
T Consensus       202 vp~~~v~~G~Pak~i~~~~~~~~~  225 (240)
T 3r8y_A          202 VPPYTVVAGTPARVIKEIDEKTKA  225 (240)
T ss_dssp             BCTTEEEEETTEEEEEEC------
T ss_pred             cCCCcEEEccCCEEEecCCHHHHh
Confidence            999999999999998877554443

>3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A

Probab=99.84  E-value=2.4e-20  Score=146.22  Aligned_cols=138  Identities=25%  Similarity=0.258  Sum_probs=96.0

Q ss_pred             EECCCCEECCceEE-eccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEE
Q 025890           65 TIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVI  143 (246)
Q Consensus        65 ~ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~i  143 (246)
                      .+++++.|.+.+.| .++.||++|.|++++.|..+                 ...+.||+++.|++++.|......    
T Consensus        17 ~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~-----------------~~~i~IG~~~~I~~~~~I~~~~~~----   75 (187)
T 3r3r_A           17 GIGQRVMIDTSSVVIGDVRLADDVGIWPLVVIRGD-----------------VNYVAIGARTNIQDGSVLHVTHKS----   75 (187)
T ss_dssp             EECTTCEECTTCEEEEEEEECTTCEECTTCEEEEE-----------------EEEEEECTTCEECTTCEEECBCCB----
T ss_pred             ccCCCeEECCCCEEECceEECCCCEECCCcEEEcC-----------------CccEEECCCCEECCCCEEecCCcc----
Confidence            34444444444444 57888888888888887531                 013578888888888777432100    


Q ss_pred             CCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEe--ccCCCCCeEEc
Q 025890          144 GDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVF--KDITEPGDYGG  221 (246)
Q Consensus       144 g~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~--~~~~~~~~~~g  221 (246)
                       ..      ..-..++.||++++++.++.+.+ ++||++|+||.+++|.+++.|+++++|+++++|.  +++|+++++.|
T Consensus        76 -~~------~~~~~~~~Ig~~~~Ig~~~~i~~-~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~vv~G  147 (187)
T 3r3r_A           76 -SS------NPHGNPLIIGEDVTVGHKVMLHG-CTIGNRVLVGMGSIVLDGAIIEDDVMIGAGSLVPQHKRLESGYLYLG  147 (187)
T ss_dssp             -TT------BC-CBCEEECSSCEECTTCEEES-CEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTTEEEET
T ss_pred             -cc------CCCCCCeEECCCCEECCCCEEeC-cEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcCcCCCcEEEe
Confidence             00      00024455555555555555544 8999999999999999999999999999999999  89999999999


Q ss_pred             cCchhhHHHH
Q 025890          222 FPAVPIHEWR  231 (246)
Q Consensus       222 ~p~~~~~~~~  231 (246)
                      +||+.++.+.
T Consensus       148 ~pa~~i~~~~  157 (187)
T 3r3r_A          148 SPVKQIRPLS  157 (187)
T ss_dssp             TTTEEEEECC
T ss_pred             cCCeEcCcCC
Confidence            9998877553

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*

Probab=99.84  E-value=1.2e-19  Score=158.26  Aligned_cols=159  Identities=16%  Similarity=0.205  Sum_probs=125.3

Q ss_pred             CCceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCC
Q 025890           20 GGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDG   99 (246)
Q Consensus        20 ~~~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~   99 (246)
                      ....+.+++.+++++.|++++.|.+++.|++++.|+++|.|.+++.||++|.|++++.|.++.|++++.|++++.++   
T Consensus       237 ~~~~i~~~~~ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~---  313 (401)
T 2ggo_A          237 DNVKIKGKVIIEEDAEIKSGTYIEGPVYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIMEGSKIPHLSYVG---  313 (401)
T ss_dssp             SSCEEESCEEECTTCEECTTCEEESSEEECTTCEECSSCEECTTEEECSSCEEEETCEEESEEECTTCEEEESCEEE---
T ss_pred             CCCEEcCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCcEECCCCEECCCCEEecCEEcCCcEECCCceEc---
Confidence            33455556666666666677777777778888888888888888888888888888888889999999999999885   


Q ss_pred             ceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCc----cCeEECCCCEECCCCEEccCcEECCCcEEccceeEec
Q 025890          100 FGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSW----RDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAG  175 (246)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~----~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~  175 (246)
                                        ++.||+++.|++++++....+    +++.+++++.+...  ...+++||++++|+.++.+.+
T Consensus       314 ------------------~~~Ig~~~~Ig~~~~i~~~~~~~~~~~~~i~~~~~~~~~--~~~~v~Ig~~~~Ig~~~~I~~  373 (401)
T 2ggo_A          314 ------------------DSVIAEDVNFGAGTLIANLRFDEKEVKVNVKGKRISSGR--RKLGAFIGGHVRTGINVTILP  373 (401)
T ss_dssp             ------------------SCEECTTCEECTTCEECCSCTTCSCCEEEETTEEEECSC--SSCCCEECTTCEECTTCEECT
T ss_pred             ------------------ceEECCCcEECCCcEEcCcccCCCceeEEECCceEEecc--cccCcEECCCeEECCCcEEcC
Confidence                              899999999999999984332    35666666655442  235788999999999999999


Q ss_pred             ceEECCCeEECcCcEECCCcEECCCCEE
Q 025890          176 SATIGDYVTLGGRVAVRDHVSIASKVRL  203 (246)
Q Consensus       176 ~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v  203 (246)
                      +++||++|.|+++++|.++  +++++++
T Consensus       374 gv~Ig~~~vi~~gsvv~~~--vp~~~~v  399 (401)
T 2ggo_A          374 GVKIGAYARIYPGAVVNRD--VGYGEFF  399 (401)
T ss_dssp             TCEECTTCEECTTCEECSC--BCTTCEE
T ss_pred             CcEECCCcEECCCCeEccc--cCCCcEE
Confidence            9999999999999999987  4566654

>3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A

Probab=99.83  E-value=9e-21  Score=150.09  Aligned_cols=66  Identities=29%  Similarity=0.309  Sum_probs=59.3

Q ss_pred             cceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhhHHHHHHh
Q 025890          169 GQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQV  234 (246)
Q Consensus       169 ~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~~~~~~  234 (246)
                      ....+.++++||++||||++++|.++++||++++|+++|+|++|+|+++++.|+||+.++.+.+..
T Consensus       123 ~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~dvp~~~v~~G~Pak~i~~~~~~~  188 (199)
T 3ftt_A          123 EGFEKAGPIHIGSNTWFGGHVAVLPGVTIGEGSVIGAGSVVTKDIPPHSLAVGNPCKVVRKIDNDL  188 (199)
T ss_dssp             TTEEEECCEEECSSEEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTTTEEEEECCCCC
T ss_pred             ccceecCCeEEcCCcEEcCCCEECCCCEECCCCEECCCCEECcccCCCCEEEEECCEEEeeCChhh
Confidence            344556789999999999999999999999999999999999999999999999999998875433

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*

Probab=99.83  E-value=1.9e-19  Score=159.49  Aligned_cols=156  Identities=19%  Similarity=0.272  Sum_probs=105.1

Q ss_pred             CceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCc-----EECCCCEECCceEEe-ccEECCCcEECCCeE
Q 025890           21 GGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAV-----TIGQSTNIGFNVALS-NCIIGDSCIIHNGVC   94 (246)
Q Consensus        21 ~~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~-----~ig~~~~I~~~~~I~-~~~Ig~~~~I~~~~~   94 (246)
                      ...+++++.|.+++.||+++.|++++.|. ++.||++|.|++++     .||+++.|++++.|. ++.|++++.|++++.
T Consensus       274 ~~~i~~~~~i~~~~~ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~~~~Ig~~~~ig~~~~i~~~~~ig~~~~Ig~~~~  352 (459)
T 4fce_A          274 DITIDTNVIIEGHVILGDRVRIGTGCVLK-NCVIGDDSEISPYTVLEDARLDANCTVGPFARLRPGAELAEGAHVGNFVE  352 (459)
T ss_dssp             SCEECTTEEEEEEEEECTTCEECTTCEEE-SCEECTTCEECSSCEEESCEECTTCEECSSEEECTTCEECTTCEEEEEEE
T ss_pred             CcEECCCeeeccceEECCCCEECCCCEEe-ccEECCCCEECCCcEEeCCEECCCCEECCccEECCCcEECCCcEECCCeE
Confidence            33444444444444445555555554443 24445555554444     456666666666663 566666666666666


Q ss_pred             ECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEcc-------CcEECCCcEE
Q 025890           95 IGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGH-------NVAIGKSCML  167 (246)
Q Consensus        95 i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~-------~~~Ig~~~~i  167 (246)
                      +.                     ++.|++++.++..+.+.     ++.||+++.++.++.+..       .+.||++|+|
T Consensus       353 i~---------------------~~~i~~~~~i~~~~~i~-----~~~Ig~~~~ig~~~~i~~~~~~~~~~v~Ig~~~~I  406 (459)
T 4fce_A          353 IK---------------------KARLGKGSKAGHLSYLG-----DAEIGAGVNIGAGTITCNYDGANKFKTIIGDDVFV  406 (459)
T ss_dssp             EE---------------------EEEECTTCEEEEEEEEE-----EEEECTTCEECTTCEEECBCSSCBCCEEECTTCEE
T ss_pred             Ee---------------------eeEEcCCCEECCceEEC-----CeEECCCCEECCCCEEeccccccCCCCEECCCeEE
Confidence            64                     67788888887777775     478888888888887743       6888888888


Q ss_pred             ccceeEecceEECCCeEECcCcEECCCcEECCCCEEcc
Q 025890          168 CGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA  205 (246)
Q Consensus       168 ~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~  205 (246)
                      +.++.+.++++||++|+||++++|.++  +++++++..
T Consensus       407 G~~~~I~~gv~Ig~~~~igagsvV~~~--v~~~~~~~G  442 (459)
T 4fce_A          407 GSDTQLVAPVTVANGATIGAGTTVTRD--VAENELVIS  442 (459)
T ss_dssp             CTTCEEESSEEECTTCEECTTCEECSC--BCTTCEECC
T ss_pred             cCCCEEcCCcEECCCCEECCCCEEccc--cCCCCEEEe
Confidence            888888888999999999999888887  567776655

>3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified}

Probab=99.83  E-value=6.7e-20  Score=143.87  Aligned_cols=136  Identities=23%  Similarity=0.318  Sum_probs=98.0

Q ss_pred             ECCCCEECCceEE-eccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEEC
Q 025890           66 IGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIG  144 (246)
Q Consensus        66 ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig  144 (246)
                      |++++.|.+++.| .++.||++|.|++++.|..+                 ...+.||+++.|++++.|.....     .
T Consensus        22 ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~-----------------~~~i~IG~~~~I~~~~~I~~~~~-----~   79 (189)
T 3r1w_A           22 LGERVFVDRSSVIIGDVELGDDCSVWPLAVIRGD-----------------MHHIRIGARTSVQDGSVLHITHA-----S   79 (189)
T ss_dssp             ECTTCEECTTCEEEEEEEECTTCEECTTCEEEEE-----------------EEEEEECTTCEECTTCEEECBCC-----S
T ss_pred             ECCCcEECCCCEEeeeeEECCCCEECCCCEEecC-----------------CCceEECCCCEECCCCEEecCCc-----c
Confidence            3444444444444 57888888888888888521                 01568888888888888864210     0


Q ss_pred             CCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEe--ccCCCCCeEEcc
Q 025890          145 DHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVF--KDITEPGDYGGF  222 (246)
Q Consensus       145 ~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~--~~~~~~~~~~g~  222 (246)
                      ...      ...+++.||++++++.++.+.+ ++||++|+||.+++|.+++.|+++++|+++++|.  +++|+++++.|+
T Consensus        80 ~~~------~~~~~~~Ig~~~~Ig~~~~i~~-~~Ig~~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~g~~i~~~~vv~G~  152 (189)
T 3r1w_A           80 DYN------PGGYPLIIGDDVTIGHQAMLHG-CTIGNRVLIGMKSMIMDGAIVEDEVIVAAGATVSPGKVLESGFVYMGT  152 (189)
T ss_dssp             SSS------TTCBCEEECSSEEECTTCEEES-CEECSSEEECTTCEECTTCEECSSCEECTTCEECTTCEECTTEEEETT
T ss_pred             cCC------CCCCCeEECCCCEECCCCEEeC-cEECCCcEECCCCEEcCCCEECCCCEEccCCEECCCCEeCCCCEEECC
Confidence            000      0123455555555555555555 8999999999999999999999999999999999  789999999999


Q ss_pred             CchhhHHH
Q 025890          223 PAVPIHEW  230 (246)
Q Consensus       223 p~~~~~~~  230 (246)
                      ||+.++.+
T Consensus       153 pa~~i~~~  160 (189)
T 3r1w_A          153 PAKKVRPI  160 (189)
T ss_dssp             TTEEEEEC
T ss_pred             ccccccCC
Confidence            99887655

>3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A*

Probab=99.82  E-value=2.7e-20  Score=146.33  Aligned_cols=111  Identities=24%  Similarity=0.232  Sum_probs=79.3

Q ss_pred             ceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEE
Q 025890          118 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI  197 (246)
Q Consensus       118 ~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~i  197 (246)
                      ++.||+++.|+++++|...  .++.||++|.+++++.|.......+.........+.++++||++||||++++|.++++|
T Consensus        78 ~v~IG~~~~I~~~~~i~~~--~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~I  155 (190)
T 3hjj_A           78 NIHVGKSFFANFNCVILDV--CEVRIGDHCMFAPGVHIYTATHPLHPVERNSGKEYGKPVKIGNNVWVGGGAIINPGVSI  155 (190)
T ss_dssp             TEEECTTCEECTTCEEECS--SCEEECTTCEECTTCEEECEECCSSHHHHTSSEEEECCEEECTTCEECTTCEECTTCEE
T ss_pred             ceEECCceeeCCCeEEEeC--CCeEECCceEEcCCcEEecCCccCchhhccccccccCCeEECCCCEECCCCEECCCCEE
Confidence            3444444444444444321  23445555555555555444444444444445566778999999999999999999999


Q ss_pred             CCCCEEccCcEEeccCCCCCeEEccCchhhHHH
Q 025890          198 ASKVRLAANSCVFKDITEPGDYGGFPAVPIHEW  230 (246)
Q Consensus       198 g~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~~  230 (246)
                      |++++|+++|+|++|+|+++++.|+||+.++++
T Consensus       156 G~~~vIgagsvV~~dvp~~~v~~G~Pa~~i~~~  188 (190)
T 3hjj_A          156 GDNAVIASGAVVTKDVPNNVVVGGNPAKVIKTI  188 (190)
T ss_dssp             CTTCEECTTCEECSCBCTTEEEETTTTEEEEEC
T ss_pred             CCCCEECCCCEECcccCCCCEEEccCCEEeccC
Confidence            999999999999999999999999999998765

>1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A

Probab=99.82  E-value=7e-19  Score=136.20  Aligned_cols=54  Identities=26%  Similarity=0.165  Sum_probs=40.5

Q ss_pred             eEECCCeEECcCcEECCCcEECCCCEEccCcEEe--ccCCCCCeEEccCchhhHHH
Q 025890          177 ATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVF--KDITEPGDYGGFPAVPIHEW  230 (246)
Q Consensus       177 ~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~--~~~~~~~~~~g~p~~~~~~~  230 (246)
                      ++||++|+||.++++.+++.||++++|++++++.  +++|+++++.|+||+.++.+
T Consensus        91 ~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~vv~G~pa~~~~~~  146 (173)
T 1xhd_A           91 CHIKKDALIGMGSIILDGAEIGEGAFIGAGSLVSQGKKIPPNTLAFGRPAKVIREL  146 (173)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEEEETTEEEEEEC
T ss_pred             CEECCCCEEcCCCEEcCCCEECCCCEECCCCEECCCcEeCCCCEEECCCCEECCCC
Confidence            6777777777777777777777788888887777  56777777778877765543

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A

Probab=99.82  E-value=1.8e-19  Score=142.14  Aligned_cols=106  Identities=23%  Similarity=0.276  Sum_probs=95.1

Q ss_pred             ceEEC--CCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCc
Q 025890          118 NARIG--NHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHV  195 (246)
Q Consensus       118 ~~~Ig--~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~  195 (246)
                      .+.||  +++.|+++++|..    ++.||+++.++.++.+++++.||+++++++++.+.++++||++|+||.++++.+++
T Consensus        87 ~~~Ig~~~g~~I~~~~~I~~----~~~IG~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~~~  162 (194)
T 3bfp_A           87 SAIVEENAGILIMPYVVINA----KAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNL  162 (194)
T ss_dssp             TCEECTTSCCEECTTCEECT----TCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred             CceeCCCCCcEEcCCCEECC----CCEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCC
Confidence            55666  6777777777763    47888888888889998999999999999999999999999999999999999999


Q ss_pred             EECCCCEEccCcEEeccCCCCCeEEccCchhh
Q 025890          196 SIASKVRLAANSCVFKDITEPGDYGGFPAVPI  227 (246)
Q Consensus       196 ~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~  227 (246)
                      .|+++++|+++|++.+|+|+++++.|+|||.+
T Consensus       163 ~Ig~~~~Igagsvv~~~v~~~~~~~G~Pa~~i  194 (194)
T 3bfp_A          163 SLADDSILGGGATLVKNQDEKGVFVGVPAKRM  194 (194)
T ss_dssp             EECTTCEECTTCEECSCBCSCCEECCCCCCCC
T ss_pred             EECCCCEECCCCEEccccCCCCEEEeeccEEC
Confidence            99999999999999999999999999999853

>1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A

Probab=99.82  E-value=1.5e-19  Score=139.98  Aligned_cols=134  Identities=19%  Similarity=0.256  Sum_probs=113.6

Q ss_pred             cEECCCCEECCceEE-eccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeE
Q 025890           64 VTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTV  142 (246)
Q Consensus        64 ~~ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~  142 (246)
                      ..|++++.|.+++.| .++.||++|.|++++.|..+                 ...+.||+++.|++++.|.....+++.
T Consensus        13 ~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~-----------------~~~v~IG~~~~I~~~~~I~~~~~~~~~   75 (173)
T 1xhd_A           13 PKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGD-----------------VSPTIIGDRVNVQDQCTLHQSPQYPLI   75 (173)
T ss_dssp             CEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEE-----------------EEEEEECTTCEECTTCEEECCTTCCEE
T ss_pred             CEECCCcEECCCCEEECCEEECCCcEEcCCcEEecC-----------------CCeEEECCCCEECCCCEEEeCCCCCeE
Confidence            344455555555555 68999999999999999631                 014899999999999999865445799


Q ss_pred             ECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEE-ccCcEEeccCCC
Q 025890          143 IGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL-AANSCVFKDITE  215 (246)
Q Consensus       143 ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v-~~~s~v~~~~~~  215 (246)
                      |++++.++.++.+ +++.||++++|+.++.+.++++||++|+|+++++|.++..|++++++ +..+.+.+++++
T Consensus        76 Ig~~~~Ig~~~~i-~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~vv~G~pa~~~~~~~~  148 (173)
T 1xhd_A           76 LEDDVTVGHQVIL-HSCHIKKDALIGMGSIILDGAEIGEGAFIGAGSLVSQGKKIPPNTLAFGRPAKVIRELTA  148 (173)
T ss_dssp             ECTTCEECTTCEE-ESCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEEEETTEEEEEECCH
T ss_pred             ECCCCEECCCCEE-eCCEECCCCEEcCCCEEcCCCEECCCCEECCCCEECCCcEeCCCCEEECCCCEECCCCCH
Confidence            9999999999999 77999999999999999999999999999999999999999999998 666888888776

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*

Probab=99.82  E-value=6.8e-19  Score=156.40  Aligned_cols=80  Identities=14%  Similarity=0.272  Sum_probs=45.9

Q ss_pred             ceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEcc-------CcEECCCcEEccceeEecceEECCCeEECcCcE
Q 025890          118 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGH-------NVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVA  190 (246)
Q Consensus       118 ~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~-------~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~  190 (246)
                      ++.||+++.++..+.+.     ++.||+++.++.++.+..       .+.||++++|+.++.+.++++||+++.|+++++
T Consensus       360 ~~~Ig~~~~i~~~~~i~-----~~~Ig~~~~Ig~~~~i~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~i~~~s~  434 (468)
T 1hm9_A          360 GSSIGENTKAGHLTYIG-----NCEVGSNVNFGAGTITVNYDGKNKYKTVIGDNVFVGSNSTIIAPVELGDNSLVGAGST  434 (468)
T ss_dssp             SCEECTTCEEEEEEEEE-----SEEECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCEEESSCEECTTCEECTTCE
T ss_pred             eeEEcCCcEeCCceEEc-----cccccCCcEECCCcEEecCcCccCCCcEECCCeEECCCCEEeCCcEECCCCEECCCCE
Confidence            45555555555555553     355666666666555532       466666666666666666666666666666666


Q ss_pred             ECCCcEECCCCEEc
Q 025890          191 VRDHVSIASKVRLA  204 (246)
Q Consensus       191 v~~~~~ig~~~~v~  204 (246)
                      |.++  |++++++.
T Consensus       435 v~~~--v~~~~~~~  446 (468)
T 1hm9_A          435 ITKD--VPADAIAI  446 (468)
T ss_dssp             ECSC--BCTTCEEC
T ss_pred             ECCC--CCCCCEEE
Confidence            6653  33444443

>1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A

Probab=99.81  E-value=1.2e-18  Score=134.95  Aligned_cols=73  Identities=23%  Similarity=0.317  Sum_probs=38.8

Q ss_pred             EECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEE-ccCcEEeccCCC
Q 025890          142 VIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL-AANSCVFKDITE  215 (246)
Q Consensus       142 ~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v-~~~s~v~~~~~~  215 (246)
                      .||+++.++.++.+ +++.||++++|+.++.+.++++||++|+|+++++|.++..|++++++ +..+.+.+++++
T Consensus        73 ~Ig~~~~I~~~~~i-~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~~v~G~pa~~~~~~~~  146 (173)
T 1v3w_A           73 EIGEYVTIGHNAMV-HGAKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNKEIPDYSLVLGVPGKVVRQLTE  146 (173)
T ss_dssp             EECSSCEECTTCEE-ESCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTTEEEEETTEEEEEECCH
T ss_pred             EECCCCEECCCCEE-CCCEECCCCEECCCCEEeCCCEECCCCEECCCCEECCCcEeCCCcEEECcCCEEeccCCH
Confidence            33333333333333 33445555555555555555666666666666666666666666655 445555555554

>2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A*

Probab=99.81  E-value=2.9e-19  Score=143.16  Aligned_cols=128  Identities=20%  Similarity=0.179  Sum_probs=86.9

Q ss_pred             cEECCCCEECCceEEe----ccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCcc
Q 025890           64 VTIGQSTNIGFNVALS----NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWR  139 (246)
Q Consensus        64 ~~ig~~~~I~~~~~I~----~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~  139 (246)
                      +.||+++.|++++.+.    .+.||++|.|++.+.+..+                 ...+.||+++.|+++++|.....+
T Consensus        59 v~IG~~~~I~~~~~i~~~~~~~~IG~~~~Ig~~~ii~~~-----------------~~~i~IG~~~~Ig~~~~I~~~~~h  121 (215)
T 2wlg_A           59 LFIADDVEIMGLVCSLHSDCSLQIQAKTTMGNGEITIAE-----------------KGKISIGKDCMLAHGYEIRNTDMH  121 (215)
T ss_dssp             EEECTTCEEESEEEEECTTCEEEECTTCEECSEEEEECT-----------------TCEEEECTTCEECTTEEEESCCSS
T ss_pred             EEECCCCEECCCeEEEcCCceEEEcCCCEECCEEEEEeC-----------------CCCEEECCCCEEcCCEEEECCCCc
Confidence            4445555555555553    2666677777664444211                 015677777777777776642111


Q ss_pred             CeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeE
Q 025890          140 DTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDY  219 (246)
Q Consensus       140 ~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~  219 (246)
                      +....               .      .+.......+++||++||||.+++|.+++.||++++|+++|+|++++|+++++
T Consensus       122 ~~~~~---------------~------~~~~~~~~~~v~Igd~v~IG~~~~I~~gv~Ig~~~vIgagsvV~~~vp~~~i~  180 (215)
T 2wlg_A          122 PIYSL---------------E------NGERINHGKDVIIGNHVWLGRNVTILKGVCIPNNVVVGSHTVLYKSFKEPNCV  180 (215)
T ss_dssp             CEEET---------------T------TCBBCCCCCCEEECTTCEECTTCEECTTCEECSSCEECTTCEECSCCCCCSCE
T ss_pred             ccccc---------------c------ccccccCCCCeEECCCcEECCCCEECCCCEECCCCEECCCCEEcCccCCCeEE
Confidence            00000               0      01112234679999999999999999999999999999999999999999999


Q ss_pred             E-ccCchhhHH
Q 025890          220 G-GFPAVPIHE  229 (246)
Q Consensus       220 ~-g~p~~~~~~  229 (246)
                      . |+||+.++.
T Consensus       181 ~aG~Pa~~i~~  191 (215)
T 2wlg_A          181 IAGSPAKIVKE  191 (215)
T ss_dssp             EETTTTEEEEC
T ss_pred             EcccCCEEECC
Confidence            9 999999876

>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A*

Probab=99.80  E-value=2.2e-19  Score=142.08  Aligned_cols=61  Identities=30%  Similarity=0.310  Sum_probs=56.8

Q ss_pred             eEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhhHHHHH
Q 025890          172 GIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRR  232 (246)
Q Consensus       172 ~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~~~~  232 (246)
                      .+..+++||++||||++++|.++++||++++|+++|+|++|+|+++++.|+||+.++.+.+
T Consensus       127 ~~~~~v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~~dvp~~~vv~G~PArvik~~~~  187 (203)
T 1krr_A          127 MYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSIVTKDIPPNVVAAGVPCRVIREIND  187 (203)
T ss_dssp             BEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTTTEEEEECCG
T ss_pred             eeCCCcEECCCeEECCCCEEeCCeEECCCCEECCCCEECCCcCCCcEEEccCcEEeccCCh
Confidence            4567799999999999999999999999999999999999999999999999999987744

>4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A

Probab=99.80  E-value=3.4e-20  Score=149.03  Aligned_cols=57  Identities=28%  Similarity=0.373  Sum_probs=54.0

Q ss_pred             EecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhhHH
Q 025890          173 IAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHE  229 (246)
Q Consensus       173 ~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~  229 (246)
                      +.++++||++|+||.+++|.++++||++|+|+++|+|++|+|+++++.|+||+.+++
T Consensus       116 ~~g~v~IG~~v~IG~~a~I~~gv~IG~gavIgagsvV~~dVp~~~vv~G~PAk~ir~  172 (220)
T 4hur_A          116 LKGDIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTKNVAPYSIVGGNPLKFIRK  172 (220)
T ss_dssp             CCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTTTEEEEE
T ss_pred             ccCCeEECCCcEECCCCEEeCCCEECCCCEEcCCCEEcccCCCCcEEeCCCCEeehh
Confidence            456799999999999999999999999999999999999999999999999998874

>3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A*

Probab=99.80  E-value=1.2e-19  Score=142.34  Aligned_cols=61  Identities=30%  Similarity=0.376  Sum_probs=56.2

Q ss_pred             ceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhhHHH
Q 025890          170 QVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEW  230 (246)
Q Consensus       170 ~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~~  230 (246)
                      +..+..+++||++||||++++|.++++||++++|+++|+|++|+|+++++.|+||+.++++
T Consensus       126 ~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~dvp~~~v~~G~Pa~vi~~i  186 (188)
T 3srt_A          126 GIEYGSPVKIGDNVWIGGGVIITPGITIGDNVVIGAGSVVTKDIPPNTVAVGNPCRVIKKI  186 (188)
T ss_dssp             TEEEECCEEECSSCEECTTCEECTTCEECSSEEECTTCEECSCBCSSEEEETTTTEEEEEC
T ss_pred             cceECCCcEECCCcEEcCCCEECCCcEECCCCEECCCCEECcccCCCCEEEccCCEEeccC
Confidence            3445678999999999999999999999999999999999999999999999999988764

>3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis}

Probab=99.79  E-value=9.6e-19  Score=146.52  Aligned_cols=68  Identities=19%  Similarity=0.090  Sum_probs=35.1

Q ss_pred             eEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccC
Q 025890          141 TVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDI  213 (246)
Q Consensus       141 ~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~  213 (246)
                      +.||++|.|+.++.|.+++.||++++|+.++.+.++++|++++.   +.  .....|+++++|+++|++++|.
T Consensus       203 v~IGd~v~IG~~a~I~~gv~IG~~avIgagsvV~~g~~Igd~~~---g~--~~~~~Ip~~svV~~Gs~v~kd~  270 (304)
T 3eg4_A          203 TIIEDNCFIGARSEVVEGCIVREGSVLGMGVFIGKSTKIVDRAT---GE--VFYGEVPPYSVVVAGTMPGKNV  270 (304)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCCEEETTT---CC--EECSEECTTEEEEEEEEECCCC
T ss_pred             eEEcCCCEECCCCEEcCCcEECCCcEECCCCEEcCCeEECccce---ee--eccCEeCCCCEEecCcEecCCC
Confidence            44444444444444444444554444444444444444444431   11  1223577778888888887773

>1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A

Probab=99.78  E-value=1.9e-18  Score=133.74  Aligned_cols=130  Identities=18%  Similarity=0.292  Sum_probs=95.6

Q ss_pred             EECCCCEECCceEE-eccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEE
Q 025890           65 TIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVI  143 (246)
Q Consensus        65 ~ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~i  143 (246)
                      .+++++.|.+++.+ .++.||+++.|++++.|..+                 ...+.||+++.|++++.|....      
T Consensus        12 ~i~~~~~I~~~a~i~g~v~IG~~~~I~~~~~i~~~-----------------~~~~~IG~~~~I~~~~~I~~~~------   68 (173)
T 1v3w_A           12 RIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGD-----------------IEQIYVGKYSNVQDNVSIHTSH------   68 (173)
T ss_dssp             EECTTCEECTTSEEEEEEEECTTCEECTTCEEEEE-----------------EEEEEECTTCEECTTCEEECBT------
T ss_pred             EECCCCEECCCCEEeCCEEECCCCEECCCeEEecC-----------------CceEEECCCCEECCCcEEEecC------
Confidence            34444555555555 57788888888888887521                 0147777777777777766320      


Q ss_pred             CCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEe--ccCCCCCeEEc
Q 025890          144 GDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVF--KDITEPGDYGG  221 (246)
Q Consensus       144 g~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~--~~~~~~~~~~g  221 (246)
                                  ++++.||+++.++.++.+. +++||++|+||.++.+.+++.||++++|+++++++  +++|+++++.|
T Consensus        69 ------------~~~~~Ig~~~~I~~~~~i~-~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~~v~G  135 (173)
T 1v3w_A           69 ------------GYPTEIGEYVTIGHNAMVH-GAKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNKEIPDYSLVLG  135 (173)
T ss_dssp             ------------TBCEEECSSCEECTTCEEE-SCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTTEEEEE
T ss_pred             ------------CCCeEECCCCEECCCCEEC-CCEECCCCEECCCCEEeCCCEECCCCEECCCCEECCCcEeCCCcEEEC
Confidence                        1345555555555555554 48999999999999999999999999999999999  58999999999


Q ss_pred             cCchhhHHH
Q 025890          222 FPAVPIHEW  230 (246)
Q Consensus       222 ~p~~~~~~~  230 (246)
                      +|++.++++
T Consensus       136 ~pa~~~~~~  144 (173)
T 1v3w_A          136 VPGKVVRQL  144 (173)
T ss_dssp             TTEEEEEEC
T ss_pred             cCCEEeccC
Confidence            999876644

>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A

Probab=99.78  E-value=1.5e-18  Score=141.84  Aligned_cols=73  Identities=19%  Similarity=0.224  Sum_probs=61.2

Q ss_pred             CeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCC
Q 025890          140 DTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDIT  214 (246)
Q Consensus       140 ~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~  214 (246)
                      ++.||+++.++.++.+..++.||++|+|+.++.+.+ ++||++|+|+++++| +++.|+++++|++++++..+.|
T Consensus       140 ~v~IG~~v~Ig~~~~I~~~~~Ig~~v~IG~~a~I~~-v~Ig~~~~IgagsvV-~~~~I~~~~~v~~g~vv~~~~p  212 (247)
T 1qre_A          140 AVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFK-SKVGNNCVLEPRSAA-IGVTIPDGRYIPAGMVVTSQAE  212 (247)
T ss_dssp             SEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEE-EEECTTCEECTTCEE-ESCEECTTBEECTTCEECSHHH
T ss_pred             ceEECCCCEECCCCEEcCCcEECCCCEECCCCEEec-eEECCCCEECCCCEE-CCeEeCCCCEECCCCEEecCcc
Confidence            467777777777777766788888888888888888 999999999999999 9999999999998888865433

>3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A

Probab=99.78  E-value=9.2e-18  Score=131.43  Aligned_cols=104  Identities=19%  Similarity=0.240  Sum_probs=69.4

Q ss_pred             ccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCc
Q 025890           80 NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNV  159 (246)
Q Consensus        80 ~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~  159 (246)
                      ++.||++|.|++++.|....+...         ......+.||+++.|++++.|                       +++
T Consensus        54 ~i~IG~~~~I~~~~~I~~~~~~~~---------~~~~~~~~Ig~~~~Ig~~~~i-----------------------~~~  101 (187)
T 3r3r_A           54 YVAIGARTNIQDGSVLHVTHKSSS---------NPHGNPLIIGEDVTVGHKVML-----------------------HGC  101 (187)
T ss_dssp             EEEECTTCEECTTCEEECBCCBTT---------BC-CBCEEECSSCEECTTCEE-----------------------ESC
T ss_pred             cEEECCCCEECCCCEEecCCcccc---------CCCCCCeEECCCCEECCCCEE-----------------------eCc
Confidence            346777777777777743110000         000114556666555555544                       346


Q ss_pred             EECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEE-ccCcEEeccCCC
Q 025890          160 AIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL-AANSCVFKDITE  215 (246)
Q Consensus       160 ~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v-~~~s~v~~~~~~  215 (246)
                      .||++++|+.++.+.++++||++|+|+++++|.++..|++++++ +..+.+.+++++
T Consensus       102 ~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~vv~G~pa~~i~~~~~  158 (187)
T 3r3r_A          102 TIGNRVLVGMGSIVLDGAIIEDDVMIGAGSLVPQHKRLESGYLYLGSPVKQIRPLSD  158 (187)
T ss_dssp             EECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTTEEEETTTTEEEEECCH
T ss_pred             EECCCCEECCCCEECCCCEECCCCEECCCCEECCCcCcCCCcEEEecCCeEcCcCCH
Confidence            67777777777777788999999999999999999999999975 555777776654

>3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified}

Probab=99.78  E-value=9e-18  Score=131.67  Aligned_cols=58  Identities=19%  Similarity=0.190  Sum_probs=46.8

Q ss_pred             CcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEc-cCcEEeccCCC
Q 025890          158 NVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLA-ANSCVFKDITE  215 (246)
Q Consensus       158 ~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~-~~s~v~~~~~~  215 (246)
                      ++.||++|+|+.++.+.++++||++|+|+++++|.++..|+++++++ ..+.+.+++++
T Consensus       104 ~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~g~~i~~~~vv~G~pa~~i~~~~~  162 (189)
T 3r1w_A          104 GCTIGNRVLIGMKSMIMDGAIVEDEVIVAAGATVSPGKVLESGFVYMGTPAKKVRPITE  162 (189)
T ss_dssp             SCEECSSEEECTTCEECTTCEECSSCEECTTCEECTTCEECTTEEEETTTTEEEEECCH
T ss_pred             CcEECCCcEECCCCEEcCCCEECCCCEEccCCEECCCCEeCCCCEEECCccccccCCCH
Confidence            36777777777777778889999999999999999999999999884 44666666654

>3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A

Probab=99.77  E-value=4e-19  Score=147.28  Aligned_cols=74  Identities=11%  Similarity=0.198  Sum_probs=48.8

Q ss_pred             cCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeE-Ecc-C----------c
Q 025890          157 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDY-GGF-P----------A  224 (246)
Q Consensus       157 ~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~-~g~-p----------~  224 (246)
                      +++.||++|+|+.++.+.++++||++|+||++++|.++++|++.+   .+.+...++|+++++ .|+ |          |
T Consensus       176 ~~v~IGd~v~IG~~a~I~~gv~IG~~avIgagsvV~~~~~I~~~~---~~~~~~g~Vp~~svvv~G~~P~~~g~~~~~~A  252 (276)
T 3gos_A          176 NPTIIEDNCFVGARSEVVEGVIVEEGSVISMGVFIGQSTRIYDRE---TGEVHYGRVPAGSVVVSGNLPSKDGSYSLYCA  252 (276)
T ss_dssp             CCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCCEEETT---TCCEECSEECTTEEEEEEEEECTTSSCEEEEE
T ss_pred             CCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEEcccc---ccceeccccCCCcEEECCCccCCCCccccccc
Confidence            345555666666666666778888888888888888888888875   233444466666665 364 6          7


Q ss_pred             hhhHHHHHH
Q 025890          225 VPIHEWRRQ  233 (246)
Q Consensus       225 ~~~~~~~~~  233 (246)
                      +.++++...
T Consensus       253 ~iik~~~~~  261 (276)
T 3gos_A          253 VIVKKVDAK  261 (276)
T ss_dssp             EEEEECCC-
T ss_pred             EEEEEcChh
Confidence            777665433

>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A

Probab=99.77  E-value=1.5e-18  Score=138.78  Aligned_cols=142  Identities=21%  Similarity=0.175  Sum_probs=81.0

Q ss_pred             EECCCCEECCceEE-eccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEE
Q 025890           65 TIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVI  143 (246)
Q Consensus        65 ~ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~i  143 (246)
                      .|+++++|.+++.| .++.||++|.|++++.|..+.                ...+.||+++.|++++.|.... .+..+
T Consensus        41 ~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~~~~----------------~~~v~IG~~~~Ig~~~~I~~~~-~~~~i  103 (213)
T 3kwd_A           41 EIAPTAYVHSFSNLIGDVRIKDYVHIAPGTSIRADE----------------GTPFHIGSRTNIQDGVVIHGLQ-QGRVI  103 (213)
T ss_dssp             EECTTCEECTTSEEEESEEECTTCEECTTCEEEESS----------------SCCEEECTTCEECTTCEEEECS-SCCEE
T ss_pred             cCCCCCEECCCCEEeCceEECCCCEEcCCcEEecCC----------------CCceEECCCCEECCCCEEEecC-CCcee
Confidence            34444555555555 688999999999999996421                0158999999999999997421 11222


Q ss_pred             CCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEE-------eccCCCC
Q 025890          144 GDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCV-------FKDITEP  216 (246)
Q Consensus       144 g~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v-------~~~~~~~  216 (246)
                      +++..       ..++.||++++|+.++.+.++++||++|+||++++|.+ +.||++++|+++++|       .+++|++
T Consensus       104 g~~~~-------~~~~~IG~~v~Ig~~~~I~~~v~Ig~~v~IG~~a~I~~-~~Ig~~~~Igags~V~~~~i~~~~~v~~~  175 (213)
T 3kwd_A          104 GDDGQ-------EYSVWIGDNVSITHMALIHGPAYIGDGCFIGFRSTVFN-ARVGAGCVVMMHVLIQDVEIPPGKYVPSG  175 (213)
T ss_dssp             CTTSC-------EESEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEE-EEECTTCEECSSCEEESCEECTTBEECTT
T ss_pred             ccCCc-------ccceEECCCcEECCCcEEcCCCEECCCCEECCCCEEeC-cEECCCCEEcCCCEECCcEeCCCCEECCC
Confidence            22211       02344444444444444444455555555555555543 555555555555555       3345555


Q ss_pred             CeEE-ccCchhhHHHH
Q 025890          217 GDYG-GFPAVPIHEWR  231 (246)
Q Consensus       217 ~~~~-g~p~~~~~~~~  231 (246)
                      +++. |+|++.++.+.
T Consensus       176 ~vv~~g~pa~~i~~~~  191 (213)
T 3kwd_A          176 MVITTQQQADRLPNVE  191 (213)
T ss_dssp             CEECSHHHHTTCCBCC
T ss_pred             cEEcCCCCccccccCC
Confidence            5555 66766665543

>3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis}

Probab=99.77  E-value=2.9e-18  Score=143.62  Aligned_cols=81  Identities=11%  Similarity=0.172  Sum_probs=64.1

Q ss_pred             cCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEE----------ccC---
Q 025890          157 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYG----------GFP---  223 (246)
Q Consensus       157 ~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~----------g~p---  223 (246)
                      +.+.||++|+|+.++.+..+++||++|+||++++|.++++|+++++   +....+++|+++++.          |+|   
T Consensus       201 ~~v~IGd~v~IG~~a~I~~gv~IG~~avIgagsvV~~g~~Igd~~~---g~~~~~~Ip~~svV~~Gs~v~kd~~G~P~g~  277 (304)
T 3eg4_A          201 GPTIIEDNCFIGARSEVVEGCIVREGSVLGMGVFIGKSTKIVDRAT---GEVFYGEVPPYSVVVAGTMPGKNVPGENWGP  277 (304)
T ss_dssp             CCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCCEEETTT---CCEECSEECTTEEEEEEEEECCCCTTSSCCC
T ss_pred             CCeEEcCCCEECCCCEEcCCcEECCCcEECCCCEEcCCeEECccce---eeeccCEeCCCCEEecCcEecCCCCCCcCcc
Confidence            4677777777777777788899999999999999999999999984   667778888888888          899   


Q ss_pred             ----chhhHHHHHHhhhhhhc
Q 025890          224 ----AVPIHEWRRQVANQIRS  240 (246)
Q Consensus       224 ----~~~~~~~~~~~~~~~~~  240 (246)
                          |+.++++....+.+.++
T Consensus       278 ~~~~A~iik~~~~~t~~~~~~  298 (304)
T 3eg4_A          278 SLYCAVIVKRADEKTRSKTSI  298 (304)
T ss_dssp             EEEEEEEEEECCHHHHHHSCH
T ss_pred             cccceEEEEEccccchhhhhH
Confidence                88887775554444433

>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A

Probab=99.77  E-value=2.2e-17  Score=139.72  Aligned_cols=65  Identities=20%  Similarity=0.171  Sum_probs=45.4

Q ss_pred             CCcEEcCCcEECc-CcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEEC
Q 025890           32 STVLIEVGAIVHS-KAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG   96 (246)
Q Consensus        32 ~~~~I~~~a~I~~-~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~   96 (246)
                      .++....+++|.+ ++.++++++|++++.|.+++.|+++|.|+++|.|.++.|++++.|++++.|.
T Consensus        51 ~nl~~~~~~~I~~~~a~I~~~a~I~~~~~I~g~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~s~I~  116 (334)
T 2pig_A           51 NVLSQQGDCWIYDENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQ  116 (334)
T ss_dssp             TSBCSSSSCEECCTTCEEETTCEECTTCEEESSCEEESSCEECTTCEEESCEEESSCEECTTCEEE
T ss_pred             CCcccCCceEEcCCCeEEcCCcEECCCcEEeeeeeECCCcEECCCCEEEeEEEcCCCEEeCCcEEe
Confidence            3444455666666 6666677777777777777777777777777777777777777777777775

>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A

Probab=99.76  E-value=1.1e-17  Score=133.63  Aligned_cols=76  Identities=17%  Similarity=0.233  Sum_probs=61.4

Q ss_pred             CeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCC
Q 025890          140 DTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPG  217 (246)
Q Consensus       140 ~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~  217 (246)
                      ++.||+++.++.++.+..++.||++|+|+.++.+.+ ++||++|+|+++++| .++.|++++.|.+++++.++.|+..
T Consensus       111 ~~~IG~~v~Ig~~~~I~~~v~Ig~~v~IG~~a~I~~-~~Ig~~~~Igags~V-~~~~i~~~~~v~~~~vv~~g~pa~~  186 (213)
T 3kwd_A          111 SVWIGDNVSITHMALIHGPAYIGDGCFIGFRSTVFN-ARVGAGCVVMMHVLI-QDVEIPPGKYVPSGMVITTQQQADR  186 (213)
T ss_dssp             SEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEE-EEECTTCEECSSCEE-ESCEECTTBEECTTCEECSHHHHTT
T ss_pred             ceEECCCcEECCCcEEcCCCEECCCCEECCCCEEeC-cEECCCCEEcCCCEE-CCcEeCCCCEECCCcEEcCCCCccc
Confidence            456666666666666666677888888888887776 999999999999999 6899999999999999987666544

>1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3

Probab=99.75  E-value=5.3e-18  Score=132.13  Aligned_cols=110  Identities=25%  Similarity=0.270  Sum_probs=78.9

Q ss_pred             ceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEE
Q 025890          118 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI  197 (246)
Q Consensus       118 ~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~i  197 (246)
                      ++.||+++.|+++++|...  .++.||+++.+++++.+.....-.+...-..+..+..+++||++||||++++|.++++|
T Consensus        72 ~v~IG~~~~I~~~~~i~~~--~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~~v~Ig~~a~I~~gv~I  149 (182)
T 1ocx_A           72 NIFLGNNFFANFDCVMLDV--CPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTI  149 (182)
T ss_dssp             TEEECSSEEECSSEEEECS--SCEEECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTTCEECTTCEECTTCEE
T ss_pred             CEEECCCcEEeCCeEEEec--cceEEcCCcEEeCCcEEEeCCCccChhhcccCccccCCeEEeCCeEECCCCEECCCcEE
Confidence            6777777777777777532  34556666555555555211000000000012233568999999999999999999999


Q ss_pred             CCCCEEccCcEEeccCCCCCeEEccCchhhHH
Q 025890          198 ASKVRLAANSCVFKDITEPGDYGGFPAVPIHE  229 (246)
Q Consensus       198 g~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~  229 (246)
                      |++++|+++|+|++|+|+++++.|+||+.+++
T Consensus       150 G~~~vIgagsvV~~dip~~~vv~G~Pa~~i~~  181 (182)
T 1ocx_A          150 GDNVVVASGAVVTKDVPDNVVVGGNPARIIKK  181 (182)
T ss_dssp             CTTCEECTTCEECSCBCSSEEEETTTTEEEEE
T ss_pred             CCCCEECCCCEECCcCCCCcEEEccccEEecc
Confidence            99999999999999999999999999998764

>4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus}

Probab=99.75  E-value=6.8e-19  Score=140.81  Aligned_cols=65  Identities=25%  Similarity=0.289  Sum_probs=58.3

Q ss_pred             EEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhhHHH
Q 025890          166 MLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEW  230 (246)
Q Consensus       166 ~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~~  230 (246)
                      .+..+....++++||++|+||.+++|.++++||++++|+++|+|++|+|+++++.|+||+.++++
T Consensus       108 ~~~~~~~~~g~v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV~~dv~~~~~~~G~Pa~~i~~r  172 (219)
T 4e8l_A          108 PSLKDLPLKGDIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTKNVAPYSIVGGNPLKFIRKR  172 (219)
T ss_dssp             CCTTTSCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTTTEEEEES
T ss_pred             cccccccccCCcEECCCeEECCCCEEcCCCEECCCCEECCCCEEcccCCCCeEEEecCCEeeccc
Confidence            34444555678999999999999999999999999999999999999999999999999988764

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A*

Probab=99.75  E-value=9.5e-17  Score=126.16  Aligned_cols=153  Identities=19%  Similarity=0.281  Sum_probs=97.8

Q ss_pred             CceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEE-eccEECCCcEECCCeEECCCC
Q 025890           21 GGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDG   99 (246)
Q Consensus        21 ~~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~~   99 (246)
                      ...+++.++|.+++.|++++.|++++.|+++++||++|.|++++.|+.++.|+++|.| .++.|++++.|++++.+++. 
T Consensus         3 ~~~I~p~a~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~Ig~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~ig~~-   81 (192)
T 3mqg_A            3 MATIHPTAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQNNVSVYDNVFLEDDVFCGPS-   81 (192)
T ss_dssp             CCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSSCEECTTCEECTTEEECTTCEECTT-
T ss_pred             CCEECCCcEECCCCEECCCCEECCCCEECCCcEECCCCEECCCEEECCceEECCCcEEcCCcEEeCCCEECCCCEECCc-
Confidence            4567888888888888888888888888888888888888878877777777777777 44666666666666666531 


Q ss_pred             ceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEE
Q 025890          100 FGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATI  179 (246)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~I  179 (246)
                                         +.+....  .....+...          .      . ..++.||++++|+.++.+..+++|
T Consensus        82 -------------------~~~~~~~--~~~~~~~~~----------~------~-~~~~~Ig~~v~IG~~~~I~~g~~I  123 (192)
T 3mqg_A           82 -------------------MVFTNVY--NPRAAIERK----------S------E-YRDTIVRQGATLGANCTVVCGATI  123 (192)
T ss_dssp             -------------------CBCCSCS--SCBTTBCCG----------G------G-CCCEEECTTCEECTTCEECTTCEE
T ss_pred             -------------------eEEeccc--CCccccccc----------c------c-cCCcEECCCcEECCCCEECCCCEE
Confidence                               1111100  000101100          0      0 134555555566666666677889


Q ss_pred             CCCeEECcCcEECCCcEECCCCEEc-cCcEEeccCC
Q 025890          180 GDYVTLGGRVAVRDHVSIASKVRLA-ANSCVFKDIT  214 (246)
Q Consensus       180 g~~~~Ig~~~~v~~~~~ig~~~~v~-~~s~v~~~~~  214 (246)
                      |++|.|+++++|.++  ++++++++ ..+.+.+.+.
T Consensus       124 g~~~~IgagsvV~~~--vp~~~v~~G~PAk~i~~~~  157 (192)
T 3mqg_A          124 GRYAFVGAGAVVNKD--VPDFALVVGVPARQIGWMS  157 (192)
T ss_dssp             CTTCEECTTCEECSC--BCTTEEEETTTTEEEEEBC
T ss_pred             CCCCEEcCCCEECcc--cCCCCEEEccCCEEEEeec
Confidence            999999999999876  56777554 3455555443

>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3

Probab=99.74  E-value=1e-18  Score=139.66  Aligned_cols=62  Identities=26%  Similarity=0.252  Sum_probs=56.8

Q ss_pred             ccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhhHH
Q 025890          168 CGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHE  229 (246)
Q Consensus       168 ~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~  229 (246)
                      ..+..+.++++||++||||.+++|.++++||++|+|+++|+|++|+|+++++.|+||+.+++
T Consensus       103 ~~~~~~~g~v~IG~~v~IG~~a~I~~gv~IG~~~iIgagsvV~~dVp~~~vv~G~PAk~i~~  164 (212)
T 3eev_A          103 RDGFTRSGDTIIGHDVWIGTEAMIMPGVKIGHGAIIASRSVVTKDVAPYEVVGSNPAKHIKF  164 (212)
T ss_dssp             CCCCCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTTTEEEEE
T ss_pred             cCCcccCCCeEECCCCEECCCCEEcCCCEECCCCEECCCCEEccccCCCcEEEecCCEEEec
Confidence            34445567899999999999999999999999999999999999999999999999998875

>3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei}

Probab=99.74  E-value=5.7e-18  Score=142.29  Aligned_cols=72  Identities=14%  Similarity=0.233  Sum_probs=41.7

Q ss_pred             CcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeE-Ecc-C----------ch
Q 025890          158 NVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDY-GGF-P----------AV  225 (246)
Q Consensus       158 ~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~-~g~-p----------~~  225 (246)
                      ++.||++|+|+.++.+..++.||++|+||++++|.+++.|++.+   .+.+...++|+++++ .|+ |          |+
T Consensus       218 ~v~IGd~v~IG~~a~I~~gv~IG~g~vIgagsvV~~~t~I~d~~---~~~v~~g~Vp~gsvVvaGsvP~~~g~~~~~~A~  294 (316)
T 3tk8_A          218 PVIIEDNCFIGARSEVVEGVIVEENSVISMGVYLGQSTKIYDRE---TGEVTYGRIPAGSVVVAGNLPAKDGTHSLYCAV  294 (316)
T ss_dssp             CCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCCEEETT---TCCEECSEECTTEEEEEEEEECTTSSCEEEEEE
T ss_pred             CcEECCCCEECCCCEEcCCCEECCCCEEcCCCEEcCCeeecccc---cccccccEeCCCCEEECCCCcCCcccccccceE
Confidence            44555555555555555666677777777777777777666654   222333356666655 464 6          66


Q ss_pred             hhHHHHH
Q 025890          226 PIHEWRR  232 (246)
Q Consensus       226 ~~~~~~~  232 (246)
                      .++.+..
T Consensus       295 iik~~~~  301 (316)
T 3tk8_A          295 IVKKVDA  301 (316)
T ss_dssp             EEEECCC
T ss_pred             EEEECCc
Confidence            6665543

>3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei}

Probab=99.74  E-value=8.5e-18  Score=141.24  Aligned_cols=70  Identities=24%  Similarity=0.420  Sum_probs=41.1

Q ss_pred             ECCCCEECCCCEEccCcEECCCcEEccceeEec--------ceEECCCeEECcCcEECCCcEECCCCEEccCcEEecc
Q 025890          143 IGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAG--------SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKD  212 (246)
Q Consensus       143 ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~--------~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~  212 (246)
                      ||+++.+..++.|++++.||++|.|++++.+.+        +++||++|+||++++|.+++.||++++|+++++|.++
T Consensus       177 IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~I~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~g~vIgagsvV~~~  254 (316)
T 3tk8_A          177 VDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEENSVISMGVYLGQS  254 (316)
T ss_dssp             ECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTSCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred             ECCCCEEccceEECCCCEECCCCEEcCCCEECCCcccccCCCcEECCCCEECCCCEEcCCCEECCCCEEcCCCEEcCC
Confidence            333344434444444444444444444444444        5677777777777777777777777777777777653

>2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A

Probab=99.74  E-value=9e-18  Score=131.19  Aligned_cols=111  Identities=24%  Similarity=0.267  Sum_probs=78.7

Q ss_pred             ceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEE
Q 025890          118 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI  197 (246)
Q Consensus       118 ~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~i  197 (246)
                      ++.||+++.+.++++|...  .++.||+++.++.++.|.....-.+......+..+..+++||++||||++++|.++++|
T Consensus        74 ~v~IG~~~~i~~~~~i~~~--~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~~~I~~gv~I  151 (185)
T 2p2o_A           74 NIHVGENFFMNFDGVILDV--CEVRIGDHCFIGPGVHIYTATHPLDPHERNSGLEYGKPVVIGHNVWIGGRAVINPGVTI  151 (185)
T ss_dssp             TEEECTTEEECSSEEEECS--SCEEECTTCEECTTCEEECEECCSSHHHHHTCCBEECCEEECSSCEECTTCEECTTCEE
T ss_pred             CEEECCeeEEcCCeEEEec--cceEECCCcEEeCCCEEEcCCCcCChhhcccCccccCCeEEcCCeEECCCCEECCCCEE
Confidence            5677777777777766532  34555555555555555221100000000112234668999999999999999999999


Q ss_pred             CCCCEEccCcEEeccCCCCCeEEccCchhhHHH
Q 025890          198 ASKVRLAANSCVFKDITEPGDYGGFPAVPIHEW  230 (246)
Q Consensus       198 g~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~~  230 (246)
                      |++++|+++|+|++++|+++++.|+||+.++++
T Consensus       152 G~~~vIgagsvV~~~vp~~~vv~G~Pa~vi~~i  184 (185)
T 2p2o_A          152 GDNAVIASGAVVTKDVPANAVVGGNPAKVIKWL  184 (185)
T ss_dssp             CTTCEECTTCEECSCBCTTEEEEETTEEEEEEC
T ss_pred             CCCCEECCCCEECCCCCCCcEEEcccCEEeeec
Confidence            999999999999999999999999999987643

>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A*

Probab=99.73  E-value=9.6e-19  Score=139.16  Aligned_cols=67  Identities=34%  Similarity=0.349  Sum_probs=60.4

Q ss_pred             CcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhhHHH
Q 025890          164 SCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEW  230 (246)
Q Consensus       164 ~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~~  230 (246)
                      ++.+..+..+.++++||++|+||.+++|.++++||++++|+++|+|++|+|+++++.|+||+.++.+
T Consensus       101 ~~~i~~~~~~~~~v~Ig~~v~IG~~a~I~~gv~Ig~~~~Igags~V~~~v~~~~i~~G~Pa~~i~~~  167 (209)
T 1mr7_A          101 HMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLAGGNPANEIKQR  167 (209)
T ss_dssp             GCCCGGGSCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEEETTEEEEEES
T ss_pred             cccccccccccCCcEECCCCEEcCCCEEcCCCEECCCCEEcCCCEEcCCCCCCeEEEeeCCEEeecc
Confidence            3455566667788999999999999999999999999999999999999999999999999988754

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A*

Probab=99.72  E-value=1.1e-16  Score=127.04  Aligned_cols=49  Identities=16%  Similarity=0.193  Sum_probs=39.8

Q ss_pred             EccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEcc
Q 025890          155 IGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA  205 (246)
Q Consensus       155 i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~  205 (246)
                      ...++.||++|+|+.++.+.++++||++|.|+++++|.++  ++++++++.
T Consensus       131 ~~~~v~IG~~v~IG~~~~I~~gv~Ig~~~~Ig~gsvV~~~--v~~~~v~~G  179 (205)
T 3vbi_A          131 KTGKVILKKHVIIGAHSIIFPNVVIGEGVAVGAMSMVKES--LDDWYIYVG  179 (205)
T ss_dssp             EECCEEECTTCEECTTCEECSSCEECTTCEECTTCEECSC--BCTTEEEET
T ss_pred             ccCCEEECCCCEECCCCEEcCCCEECCCCEEcCCCEECCc--cCCCeEEEc
Confidence            3467788888888888888889999999999999999987  567766543

>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A

Probab=99.72  E-value=1.5e-17  Score=139.18  Aligned_cols=93  Identities=25%  Similarity=0.347  Sum_probs=57.5

Q ss_pred             eEECCCCEECCCCEEccCcEECCCcEEccceeEec----ceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCC
Q 025890          141 TVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAG----SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEP  216 (246)
Q Consensus       141 ~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~----~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~  216 (246)
                      +.||+++.|++++.|..+++||+++.++.++.+..    +++||++|+||++++|.++++||++++|+++|+|++++|++
T Consensus       184 vvIG~~~~IG~~v~I~~~vtIG~~~~ig~~~~i~~~~~~~~~IGd~v~IGaga~Ilggv~IG~~a~IGagsvV~~dVp~g  263 (313)
T 3q1x_A          184 VVIGETAIIGEWCRIYQSVTLGAMHFQEEGGVIKRGTKRHPTVGDYVTIGTGAKVLGNIIVGSHVRIGANCWIDRDVDSN  263 (313)
T ss_dssp             CEECTTCEECSSCEECTTCEEECCCCCCTTCCCCCCSSCSCEECSSCEECTTCEEESSCEECSSEEECTTCEECSCBCSS
T ss_pred             eEECCCcEECCCCEECCCcEEeCCcEECCCceEcCCCccCCEECCCCEECCCCEECCCcEECCCCEECCCCEECCCcCCC
Confidence            44444444444444444444444444444333333    46999999999999999999999999999999999999999


Q ss_pred             CeEE--ccCchhhHHHHHH
Q 025890          217 GDYG--GFPAVPIHEWRRQ  233 (246)
Q Consensus       217 ~~~~--g~p~~~~~~~~~~  233 (246)
                      +.+.  |+||+.++...+.
T Consensus       264 s~vvi~G~PAkvik~~~~~  282 (313)
T 3q1x_A          264 QTVYISEHPTHFVKPCTTK  282 (313)
T ss_dssp             EEC----------------
T ss_pred             CEEEEcCCCcEEEeeCccc
Confidence            9876  9999999887644

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*

Probab=99.72  E-value=3.4e-16  Score=140.27  Aligned_cols=152  Identities=19%  Similarity=0.277  Sum_probs=113.2

Q ss_pred             eeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCC---------------cEECCCCEECCceEE-eccEECCC
Q 025890           23 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPA---------------VTIGQSTNIGFNVAL-SNCIIGDS   86 (246)
Q Consensus        23 ~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~---------------~~ig~~~~I~~~~~I-~~~~Ig~~   86 (246)
                      .+..++.+++++.|++++.+.+++.++.++.|++++.+.+.               +.+++++.+++.+.+ .++.|+++
T Consensus       279 ~i~~dv~IG~dv~I~~~v~i~g~~~Ig~~~~I~~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~ig~~~~i~~~~~i~~~  358 (501)
T 3st8_A          279 WIDVDVTIGRDTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASVVRTHGSSSSIGDGAAVGPFTYLRPGTALGAD  358 (501)
T ss_dssp             EECTTCEECTTCEECSSEEEETTCEECTTCEECSSCEEEEEEECTTCEECSEEEEEEEECTTCEECSSEEECTTCEECTT
T ss_pred             cccCceEECCcceecceeeecCccccccceEEeeceeecCceEecCCEEEeecccccccccccccCCceeecCCcEEccc
Confidence            45566666666666666666666666666666666655422               134555666666666 45667777


Q ss_pred             cEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEE-------ccCc
Q 025890           87 CIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQI-------GHNV  159 (246)
Q Consensus        87 ~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i-------~~~~  159 (246)
                      +.|++++.+.                     ++.||+++.++..+.+.     ++.||++|.||.++.+       .+.+
T Consensus       359 v~IG~~v~ik---------------------~s~Ig~gskI~~~~~i~-----d~~Ig~~v~IG~g~i~~n~dg~~~~~t  412 (501)
T 3st8_A          359 GKLGAFVEVK---------------------NSTIGTGTKVPHLTYVG-----DADIGEYSNIGASSVFVNYDGTSKRRT  412 (501)
T ss_dssp             CEEEETEEEE---------------------SCEECTTCEEEESCEEE-----SEEECSSCEECTTCEEECBCSSSBCCE
T ss_pred             cccCCeEEEc---------------------cceecCCcEEeccceec-----CceEcCCCEECCCEEEEcccCCcccCC
Confidence            7777777665                     77888888888888776     5788888888888776       2458


Q ss_pred             EECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCE
Q 025890          160 AIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVR  202 (246)
Q Consensus       160 ~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~  202 (246)
                      .||++|+|+.++.+..+++||++|+|+++++|.+++  ++++.
T Consensus       413 ~IGd~~~iG~~~~l~~~v~Ig~~~~i~ags~v~~dv--p~~~l  453 (501)
T 3st8_A          413 TVGSHVRTGSDTMFVAPVTIGDGAYTGAGTVVREDV--PPGAL  453 (501)
T ss_dssp             EECTTCEECTTCEEESSEEECTTCEECTTCEECSCB--CTTCE
T ss_pred             EECCCcEECCCCEEcCCcEECCCCEECCCCEECccc--CCCCe
Confidence            999999999999999999999999999999999985  56664

>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482}

Probab=99.70  E-value=6e-17  Score=135.21  Aligned_cols=113  Identities=21%  Similarity=0.242  Sum_probs=74.1

Q ss_pred             ceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccce-----eEecceEECCCeEECcCcEEC
Q 025890          118 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQV-----GIAGSATIGDYVTLGGRVAVR  192 (246)
Q Consensus       118 ~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~-----~~~~~~~Ig~~~~Ig~~~~v~  192 (246)
                      .+.|+.++.|++++.|..+  .++.||+++.|++++.|+.+++|+..++.....     ....+++||++|+||++++|.
T Consensus       190 gv~I~p~a~IG~~v~I~hg--~gvvIG~~~~IG~~v~I~~gvtIg~~~~~~~~~g~~i~~~~~~~~IGd~V~IGaga~Il  267 (310)
T 3f1x_A          190 GIDIHPGAQIGHHFTIDHG--TGVVIGATSIIGNNVKLYQGVTLGAKSFPLDNNGNPIKGIPRHPILEDDVIVYSNATIL  267 (310)
T ss_dssp             SCEECTTCEECSSCEEESC--TTCEECTTCEECSSCEEETTCEEECC--------------CCSCEECTTCEECTTCEEE
T ss_pred             CcEECCCCEECCCcEECCC--CCeEECCceEEcCCCEECCCCEECCCccccccccccccCCCCCCEECCCcEEcCCCEEC
Confidence            3455555555555555332  235555555555555555555555554321111     234567999999999999999


Q ss_pred             CCcEECCCCEEccCcEEeccCCCCCeEEccCchhhHHHHH
Q 025890          193 DHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRR  232 (246)
Q Consensus       193 ~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~~~~  232 (246)
                      ++++||++++|+++|+|++|+|+++++.|+|++..+.+.+
T Consensus       268 ~gv~IGd~a~IGagsvV~~dVp~~svv~GnPAk~~~~~~~  307 (310)
T 3f1x_A          268 GRVTIGKGATVGGNIWVTENVPAGSRIVQRKNKDELEHHH  307 (310)
T ss_dssp             SSCEECTTCEECSSCEECSCBCTTCEECCCCCC-------
T ss_pred             CCcEECCCCEECCCCEECCccCCCcEEECCCcccCCcccc
Confidence            9999999999999999999999999999999999877654

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A*

Probab=99.70  E-value=3.2e-16  Score=127.45  Aligned_cols=55  Identities=16%  Similarity=0.269  Sum_probs=34.6

Q ss_pred             CcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEcc-CcEEeccCC
Q 025890          158 NVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA-NSCVFKDIT  214 (246)
Q Consensus       158 ~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~-~s~v~~~~~  214 (246)
                      .+.|+++|+|+.++.+..+++||++|.|+++++|.++  ++++++++. .+.+.+.++
T Consensus       165 ~~~Ig~~~~IG~~~~I~~~~~Ig~~~~I~~gsvV~~~--vp~~~v~~G~Pak~i~~~~  220 (240)
T 3r8y_A          165 PVIVEDDVVIGANVVVLEGVTVGKGAVVAAGAVVTED--VPPYTVVAGTPARVIKEID  220 (240)
T ss_dssp             CCEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEEETTEEEEEEC-
T ss_pred             CcEECCCCEECCCCEECCCcEECCCCEECCCCEECCC--cCCCcEEEccCCEEEecCC
Confidence            3445555555555555666788888888888888876  567776543 344445444

>3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A

Probab=99.69  E-value=1.8e-16  Score=131.29  Aligned_cols=78  Identities=14%  Similarity=0.098  Sum_probs=47.4

Q ss_pred             CeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCe-------EECcCcEECCC-cEECCCCEEccCcEEec
Q 025890          140 DTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYV-------TLGGRVAVRDH-VSIASKVRLAANSCVFK  211 (246)
Q Consensus       140 ~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~-------~Ig~~~~v~~~-~~ig~~~~v~~~s~v~~  211 (246)
                      ++.||+++.|+.++.|.+++.||++++|+.++.+..+++|++++       .|++++++.+| ...+++....+++++.|
T Consensus       177 ~v~IGd~v~IG~~a~I~~gv~IG~~avIgagsvV~~~~~I~~~~~~~~~~g~Vp~~svvv~G~~P~~~g~~~~~~A~iik  256 (276)
T 3gos_A          177 PTIIEDNCFVGARSEVVEGVIVEEGSVISMGVFIGQSTRIYDRETGEVHYGRVPAGSVVVSGNLPSKDGSYSLYCAVIVK  256 (276)
T ss_dssp             CCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCCEEETTTCCEECSEECTTEEEEEEEEECTTSSCEEEEEEEEE
T ss_pred             CeEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEEccccccceeccccCCCcEEECCCccCCCCcccccccEEEE
Confidence            45555555555556666666666666666666666666666655       56666666433 24466666666677777


Q ss_pred             cCCCCC
Q 025890          212 DITEPG  217 (246)
Q Consensus       212 ~~~~~~  217 (246)
                      ++++..
T Consensus       257 ~~~~~~  262 (276)
T 3gos_A          257 KVDAKT  262 (276)
T ss_dssp             ECCC--
T ss_pred             EcChhh
Confidence            777643

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*

Probab=99.68  E-value=5.4e-17  Score=143.57  Aligned_cols=155  Identities=17%  Similarity=0.209  Sum_probs=95.7

Q ss_pred             EEeechhhhhhhcccCCCce-e-ccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEecc
Q 025890            4 YVSDIESRQQFQKWHNGGGI-F-HQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNC   81 (246)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~-i-~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~   81 (246)
                      ||.++++.+.|.+....... . .....+++.+.|+.++.|++++.|       .++.| .++.||++|+|++ +.|.++
T Consensus       277 ~w~digt~~~l~~a~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i-------~~~~I-~~~~Ig~~~~I~~-~~i~~~  347 (451)
T 1yp2_A          277 YWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKM-------LDADV-TDSVIGEGCVIKN-CKIHHS  347 (451)
T ss_dssp             CCEECSSHHHHHHHHHGGGCSSSCSSCSCCSSSCCCCCCCCCCCEEE-------EEEEE-EEEEECTTCEEEE-EEEESC
T ss_pred             EEEECCCHHHHHHHHHHHhcccccchhccCCCCeeccCCccCCCeEE-------cceEE-eCeEECCCCEEcc-eEEecc
Confidence            79999999887655432110 0 111233444445555444444444       34555 3466677777775 677788


Q ss_pred             EECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCC------------------cEECcccEEcCCCccCeEE
Q 025890           82 IIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNH------------------VEIGANSCIDRGSWRDTVI  143 (246)
Q Consensus        82 ~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~------------------~~ig~~~~i~~~~~~~~~i  143 (246)
                      .||++|.|++++.|+.                    ...++++                  +.|++++.+.         
T Consensus       348 ~Ig~~~~Ig~~~~I~~--------------------~~~~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~i~---------  398 (451)
T 1yp2_A          348 VVGLRSCISEGAIIED--------------------SLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIK---------  398 (451)
T ss_dssp             EECTTCEECTTCEEES--------------------CEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEE---------
T ss_pred             EECCCCEECCCCEEcC--------------------ceEECCCCcccccccccccccCceeEEECCCCEEe---------
Confidence            8888888888888863                    3333331                  4444444443         


Q ss_pred             CCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEE
Q 025890          144 GDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCV  209 (246)
Q Consensus       144 g~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v  209 (246)
                              ++.|+++++||+++.+.+...+.++.+||++|+||+++     +.||++++|+++|+|
T Consensus       399 --------~~~Ig~~~~IG~~~~i~~~~~~~~~~~ig~~~~ig~~~-----v~Ig~~a~i~agsvv  451 (451)
T 1yp2_A          399 --------RAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGI-----VTVIKDALIPSGIII  451 (451)
T ss_dssp             --------SEEECTTCEECTTCEECCSSCCSCEEEGGGTEEEETTE-----EEECTTCEECTTCBC
T ss_pred             --------ccEeCCCcEECCCCEEeCCcccccCceeCCCEEEcCCE-----EEECCCcEECCCccC
Confidence                    24555556666666665555555556889999999888     778888888888764

>3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus}

Probab=99.67  E-value=1.2e-16  Score=131.70  Aligned_cols=109  Identities=21%  Similarity=0.302  Sum_probs=82.2

Q ss_pred             ceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEE
Q 025890          118 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI  197 (246)
Q Consensus       118 ~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~i  197 (246)
                      .+.|+.++.||+++.|..+  .++.||+++.|++++.|..++.|+......    -..+++||++|+||++++|.++++|
T Consensus       164 gi~I~p~a~IG~~v~I~hg--~gvvIG~~~~IGd~v~I~~gvtIg~~~~~~----~~r~~~IGd~v~IGaga~Il~gv~I  237 (287)
T 3mc4_A          164 QTDIHPAARLGSGLFLDHA--TGLVVGETAVVEDNVSILHGVTLGGTGKSS----GDRHPKIRQGVLIGAGAKILGNIQV  237 (287)
T ss_dssp             CCEECTTCEECSSCEEESC--TTCEECTTCEECSSCEEETTCEEEC---------CCCSCEECTTCEECTTCEEESSCEE
T ss_pred             CeEECCCCEECCCeEEccC--CCeEECCCeEECCCCEEcCCCEEcCCcccC----CCcCCEECCCCEECCCCEECCCcEE
Confidence            5677888888888877743  245666666665555555555554432111    1235899999999999999999999


Q ss_pred             CCCCEEccCcEEeccCCCCCeEEccCchhhHHHHH
Q 025890          198 ASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRR  232 (246)
Q Consensus       198 g~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~~~~  232 (246)
                      |++++|+++|+|++|+|+++++.|+||+.++...+
T Consensus       238 G~~a~IGagsvV~kdVp~~svvvG~PAkii~~~~~  272 (287)
T 3mc4_A          238 GQCSKIAAGSVVLKSVPHNVTVAGVPARIIGETGC  272 (287)
T ss_dssp             CTTCEECTTCEECSCBCTTEEEETTTTEEEEECC-
T ss_pred             CCCCEECCCCEEccccCCCCEEEccCCEEeCcCCC
Confidence            99999999999999999999999999999886643

>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A

Probab=99.66  E-value=1.9e-15  Score=123.41  Aligned_cols=76  Identities=21%  Similarity=0.178  Sum_probs=50.7

Q ss_pred             cCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEE-eccCCCC------CeEEc-cCchhhH
Q 025890          157 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCV-FKDITEP------GDYGG-FPAVPIH  228 (246)
Q Consensus       157 ~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v-~~~~~~~------~~~~g-~p~~~~~  228 (246)
                      .++.||+++.|+.++.+.++++||++|+||++++|.+ +.||++++|+++++| ..++|++      +++.+ .|++.++
T Consensus       139 ~~v~IG~~v~Ig~~~~I~~~~~Ig~~v~IG~~a~I~~-v~Ig~~~~IgagsvV~~~~I~~~~~v~~g~vv~~~~pa~~i~  217 (247)
T 1qre_A          139 YAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFK-SKVGNNCVLEPRSAAIGVTIPDGRYIPAGMVVTSQAEADKLP  217 (247)
T ss_dssp             ESEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEE-EEECTTCEECTTCEEESCEECTTBEECTTCEECSHHHHHTCC
T ss_pred             CceEECCCCEECCCCEEcCCcEECCCCEECCCCEEec-eEECCCCEECCCCEECCeEeCCCCEECCCCEEecCcchhhhh
Confidence            4566666666666666677778888888888888777 888888888888887 2233443      33434 4777666


Q ss_pred             HHHHH
Q 025890          229 EWRRQ  233 (246)
Q Consensus       229 ~~~~~  233 (246)
                      ++.+.
T Consensus       218 ~~~~~  222 (247)
T 1qre_A          218 EVTDD  222 (247)
T ss_dssp             BCCTT
T ss_pred             hhhhh
Confidence            55443

>1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6

Probab=99.66  E-value=2.3e-16  Score=130.36  Aligned_cols=108  Identities=19%  Similarity=0.287  Sum_probs=78.8

Q ss_pred             ceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEE
Q 025890          118 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI  197 (246)
Q Consensus       118 ~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~i  197 (246)
                      .+.|+.++.|++++.|..+  .++.||+++.|++++.|..+++|+......    -..+++||++|+||++++|.++++|
T Consensus       157 g~~I~p~a~IG~gv~I~~g--~gvvIG~~~~IG~~v~I~~gvtLg~~~~~~----~~~~~~IGd~v~IGaga~Ilggv~I  230 (289)
T 1t3d_A          157 QVDIHPAAKIGRGIMLDHA--TGIVVGETAVIENDVSILQSVTLGGTGKSG----GDRHPKIREGVMIGAGAKILGNIEV  230 (289)
T ss_dssp             SCEECTTCEECSSCEECSC--TTCEECTTCEECSSCEECTTCEEECCSSSC----SSCSCEECTTCEECTTCEEESSCEE
T ss_pred             ceEEcCCCEEcCCEEECCC--CceEECCCcEECCCCEEcCCcEECCCcccc----CCCCeEECCCeEECCCCEEecCcEE
Confidence            4556666666666666543  245555555555555555555554422110    0235899999999999999999999


Q ss_pred             CCCCEEccCcEEeccCCCCCeEEccCchhhHHHH
Q 025890          198 ASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWR  231 (246)
Q Consensus       198 g~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~~~  231 (246)
                      |++++|+++|+|++|+|+++++.|+||+.++...
T Consensus       231 G~~a~IGagsvV~~dVp~~s~v~G~PAr~i~~~~  264 (289)
T 1t3d_A          231 GRGAKIGAGSVVLQPVPPHTTAAGVPARIVGKPD  264 (289)
T ss_dssp             CTTCEECTTCEECSCBCTTCEEETTTTEEEECCS
T ss_pred             CCCCEECCCCEEccCCCCCCEEEecCCEEeCcCC
Confidence            9999999999999999999999999999887654

>1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A*

Probab=99.66  E-value=5.1e-16  Score=127.18  Aligned_cols=109  Identities=21%  Similarity=0.316  Sum_probs=79.6

Q ss_pred             ceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEE
Q 025890          118 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI  197 (246)
Q Consensus       118 ~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~i  197 (246)
                      .+.|+.++.||+++.|..+  .++.||+++.||+++.|..+++|+.....    .-..+++||++|+||++++|.++++|
T Consensus       137 g~~I~p~a~IG~g~~I~~~--~~vvIG~~~~IG~~v~I~~gvtig~~~~~----~~~~~~~IGd~v~IGaga~Il~gv~I  210 (267)
T 1ssq_A          137 DVDIHPAAKIGHGIMFDHA--TGIVVGETSVIENDVSILQGVTLGGTGKE----SGDRHPKVREGVMIGAGAKILGNIEV  210 (267)
T ss_dssp             SCEECTTCEECSSCEESSC--TTCEECTTCEECTTCEECTTCEEECCSSS----CSSCSCEECTTCEECTTCEEESSCEE
T ss_pred             ceEeCCCCEECCCEEECCC--CceEECCeeEECCCCEEcCCcEECCCccc----CCCCCeEECCCeEEcCCCEEeCCcEE
Confidence            5677777777777777753  24555555555555555555544432210    01234899999999999999999999


Q ss_pred             CCCCEEccCcEEeccCCCCCeEEccCchhhHHHHH
Q 025890          198 ASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRR  232 (246)
Q Consensus       198 g~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~~~~  232 (246)
                      |++++|+++|+|++|+|+++++.|+||+.++....
T Consensus       211 G~~a~IGagsvV~~dVp~~~~v~G~PAr~i~~~~~  245 (267)
T 1ssq_A          211 GKYAKIGANSVVLNPVPEYATAAGVPARIVSQDKA  245 (267)
T ss_dssp             CTTCEECTTCEECSCBCTTCEEETTTTEECC----
T ss_pred             CCCCEECCCCEEccCCCCCCEEEecCcEEeccCCC
Confidence            99999999999999999999999999999876643

>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum}

Probab=99.65  E-value=4.8e-15  Score=116.36  Aligned_cols=115  Identities=17%  Similarity=0.200  Sum_probs=74.4

Q ss_pred             ccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCc
Q 025890           80 NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNV  159 (246)
Q Consensus        80 ~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~  159 (246)
                      ++.||++|.|++++.|.....               .+++.||+++.|++++.+                       .++
T Consensus        72 ~i~IG~~~~I~~~~~I~~~~~---------------~g~~~Ig~~~~Ig~~~~i-----------------------~~~  113 (191)
T 3ixc_A           72 KIEVGEGTNIQDNTVVHTDSM---------------HGDTVIGKFVTIGHSCIL-----------------------HAC  113 (191)
T ss_dssp             EEEECTTCEECTTCEECC-------------------CCEEECTTCEECTTCEE-----------------------CSC
T ss_pred             CeEECCCCEECCCCEEeecCC---------------cCCeEECCCCEECCCCEE-----------------------ECC
Confidence            456777777777777753100               003455555555544433                       335


Q ss_pred             EECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEE-ccCcEEeccCCCCCeEEccCchhhHHHHHHhhhhh
Q 025890          160 AIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL-AANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQI  238 (246)
Q Consensus       160 ~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v-~~~s~v~~~~~~~~~~~g~p~~~~~~~~~~~~~~~  238 (246)
                      .||++++|+.++.+.++++||++|+|+++++|.++..|++++++ +..+.+.+++++         .....+.+..+++.
T Consensus       114 ~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~gsvV~~~~~i~~~~~v~G~pa~~i~~~~~---------~~~~~~~~~~~~~~  184 (191)
T 3ixc_A          114 TLGNNAFVGMGSIVMDRAVMEEGSMLAAGSLLTRGKIVKSGELWAGRPAKFLRMMTE---------EEILYLQKSAENYI  184 (191)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEEEETTEEEEEECCH---------HHHHHHHHHHHHHH
T ss_pred             EECCCCEECCCCEEeCCeEECCCCEECCCCEECCCcCcCCCeEEECcCceecccCCH---------HHHHHHHHHHHHHH
Confidence            66666666667777778999999999999999999999999985 455666666654         44444555455544


Q ss_pred             hcc
Q 025890          239 RSS  241 (246)
Q Consensus       239 ~~~  241 (246)
                      ++.
T Consensus       185 ~l~  187 (191)
T 3ixc_A          185 ALS  187 (191)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A*

Probab=99.64  E-value=5e-16  Score=123.58  Aligned_cols=62  Identities=23%  Similarity=0.248  Sum_probs=56.4

Q ss_pred             cceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhhHHH
Q 025890          169 GQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEW  230 (246)
Q Consensus       169 ~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~~  230 (246)
                      ....+.++++||++|+||.+++|.++++||++++|+++|+|++|+|+++++.|+||+.++.+
T Consensus       103 ~~~~~~~~v~IG~~v~IG~~a~I~~gv~Ig~~~~IgagsvV~~~vp~~~~~~G~Pa~~i~~~  164 (212)
T 1xat_A          103 NGYQPAGDTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTGDVEPYAIVGGNPARTIRKR  164 (212)
T ss_dssp             CCCCCCCCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTTTEEEEES
T ss_pred             cCceecCCeEECCCCEECCCCEEeCCCEECCCCEECCCCEEcccCCCCcEEEccCCEEEccc
Confidence            33445678999999999999999999999999999999999999999999999999988753

>3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A*

Probab=99.61  E-value=4.5e-16  Score=128.43  Aligned_cols=87  Identities=16%  Similarity=0.252  Sum_probs=50.2

Q ss_pred             ceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEec--------ceEECCCeEECcCc
Q 025890          118 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAG--------SATIGDYVTLGGRV  189 (246)
Q Consensus       118 ~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~--------~~~Ig~~~~Ig~~~  189 (246)
                      .+.||+++.|++++.+..    ++.+++++.+...+  ..++.||++|.|++++.+.+        .++||++|+||+++
T Consensus       173 gA~IGeGv~Igp~~fVni----ga~Ig~g~~In~~i--~iGv~IGd~v~IgpGa~IgG~~~~~~~~~V~IGDnv~IGanA  246 (332)
T 3fsy_A          173 GAHLAPGTTVMHEGFVNY----NAGTLGASMVEGRI--SAGVVVGDGSDVGGGASIMGTLSGGGTHVISIGKRCLLGANS  246 (332)
T ss_dssp             TEEECTTCEECTTCEECT----TEEESSCCEECSEE--CTTCEECTTCEECTTCEECSBCC---CCBCEECTTCEECTTC
T ss_pred             CCEECCCCEEccccEEEE----CCeECcCCEECCce--ecceEECCCCEECCCCEEcCCCCCCCccceEECCCCEECCCC
Confidence            344444444444444432    23444444443321  12244444444444444444        38888888888888


Q ss_pred             EECCCcEECCCCEEccCcEEecc
Q 025890          190 AVRDHVSIASKVRLAANSCVFKD  212 (246)
Q Consensus       190 ~v~~~~~ig~~~~v~~~s~v~~~  212 (246)
                      +|  ++.||++|+|+++|+|++|
T Consensus       247 tI--gVtIGd~~iIGAGSVVtkd  267 (332)
T 3fsy_A          247 GL--GISLGDDCVVEAGLYVTAG  267 (332)
T ss_dssp             EE--CSCBCSSCEECTTCEECTT
T ss_pred             EE--eeEECCCCEECCCCEECCC
Confidence            88  8888888888888888876

>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli}

Probab=99.60  E-value=6.3e-15  Score=120.62  Aligned_cols=138  Identities=18%  Similarity=0.195  Sum_probs=98.9

Q ss_pred             cEECCCcEECCCCEE----CCCcEECCCCEECCceEE---eccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccc
Q 025890           46 AVLGANVCIGSGTVV----GPAVTIGQSTNIGFNVAL---SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLN  118 (246)
Q Consensus        46 ~~i~~~~~Ig~~~~i----~~~~~ig~~~~I~~~~~I---~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  118 (246)
                      +.|++++.|...+.+    .+.+.|++++.|++++.|   .++.||++|.|++++.|..+.                 ..
T Consensus        64 v~I~~~~~i~~~~~i~~g~~~~v~Ig~~~~I~~~~~i~~g~~v~IG~~~~Ig~~~~I~~~~-----------------~~  126 (252)
T 3jqy_B           64 LIIEDDVECRWLTVIFRGDNNYVRIHKNSKIKGDIVATKGSKVIIGRRTTIGAGFEVVTDK-----------------CN  126 (252)
T ss_dssp             EEECTTCEEEEEEEEEESSSCEEEECTTCEEEEEEEEESSCEEEECTTCEECTTCEEECSS-----------------SE
T ss_pred             EEEcCCcEEecceEEEeCCCCeEEECCCCEECCceEEccCCEEEECCCCEECCCcEEEeCC-----------------CC
Confidence            455555555555555    445677888888888888   368899999999999986321                 16


Q ss_pred             eEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEEC
Q 025890          119 ARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIA  198 (246)
Q Consensus       119 ~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig  198 (246)
                      +.||+++.|++++.|.....++..-  .. .........++.||++|+|+.++.+..+++||++|.||++++|.++  ++
T Consensus       127 ~~IG~~~~Ig~~~~I~~~~~~~~~~--~~-~~~~~~~~~~v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV~~~--vp  201 (252)
T 3jqy_B          127 VTIGHDCMIARDVILRASDGHPIFD--IH-SKKRINWAKDIIISSYVWVGRNVSIMKGVSVGSGSVIGYGSIVTKD--VP  201 (252)
T ss_dssp             EEECTTCEECSSEEEECSCSSCEEE--TT-TCBBCCCCCCEEECSSCEECSSEEECTTCEECTTCEECTTCEECSC--BC
T ss_pred             eEECCCCEEcCCcEEecCCCccccc--cc-ccccccccCCeEEecCcEECCCCEECCCCEECCCCEECCCCEECcc--cC
Confidence            8999999999999997642211111  11 1122334567888888888888888999999999999999999987  56


Q ss_pred             CCCEEcc
Q 025890          199 SKVRLAA  205 (246)
Q Consensus       199 ~~~~v~~  205 (246)
                      +++++..
T Consensus       202 ~~~~~~G  208 (252)
T 3jqy_B          202 SMCAAAG  208 (252)
T ss_dssp             TTEEEEE
T ss_pred             CCCEEEc
Confidence            7776643

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp}

Probab=99.60  E-value=2.4e-15  Score=133.17  Aligned_cols=112  Identities=16%  Similarity=0.180  Sum_probs=63.3

Q ss_pred             CCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEEC
Q 025890           49 GANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIG  128 (246)
Q Consensus        49 ~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig  128 (246)
                      ++++.|++++.+.+++.||++|.|++++.|.++.||++|.|+++|.|.                     ++.||+++.|+
T Consensus       277 ~~~a~I~p~a~i~g~v~IG~~~~I~~~a~I~~v~IG~~~~I~~~~~I~---------------------~~vIG~~~~Ig  335 (496)
T 3c8v_A          277 ASGASVSGYAVIKGDTVIGENVLVSQRAYLDNAWMGKGSNAQENCYII---------------------NSRLERNCVTA  335 (496)
T ss_dssp             CTTCEECTTSEEESSCEECTTCEECTTCEEEEEEECTTCEECTTCEEE---------------------EEEEEESCEEC
T ss_pred             CCCcEECCCcEEeCCeEECCCCEECCCcEEeceEecCCCEECCCceEe---------------------ceEeCCCCEEC
Confidence            334444444444444444555555555555555566666666666653                     45555555555


Q ss_pred             cccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecc----eEECCCeEECcCcEEC--CCcEECCCCE
Q 025890          129 ANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGS----ATIGDYVTLGGRVAVR--DHVSIASKVR  202 (246)
Q Consensus       129 ~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~----~~Ig~~~~Ig~~~~v~--~~~~ig~~~~  202 (246)
                      +++++.                       ++.||++++|+.++.+.++    ++||++|+||++++|.  ++..|++++.
T Consensus       336 ~~a~I~-----------------------gv~IGd~v~IG~~a~I~~~~~~~v~IG~~a~IGagsvV~~~~~~~I~~~s~  392 (496)
T 3c8v_A          336 HGGKII-----------------------NAHLGDMIFTGFNSFLQGSESSPLKIGDGCVVMPHTIIDLEEPLEIPAGHL  392 (496)
T ss_dssp             TTCEEE-----------------------SEEEEETCEECTTCEEECCSSSCEEECTTCEECTTCEEECSSCEEECSSEE
T ss_pred             CCcEEc-----------------------CceECCCcEECCCCEEeCCCCcceEECCCCEECCCCEEecCCCcEeCCCCE
Confidence            555443                       2344444444444444444    7777777777777777  7777777777


Q ss_pred             Ec
Q 025890          203 LA  204 (246)
Q Consensus       203 v~  204 (246)
                      ++
T Consensus       393 v~  394 (496)
T 3c8v_A          393 VW  394 (496)
T ss_dssp             EC
T ss_pred             EE
Confidence            76

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=99.58  E-value=5.6e-14  Score=112.64  Aligned_cols=56  Identities=16%  Similarity=0.219  Sum_probs=38.3

Q ss_pred             CEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEc
Q 025890          147 SKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLA  204 (246)
Q Consensus       147 ~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~  204 (246)
                      +.++.++.+..++.||++|+|+.++.+.++++||++|.||++++|.++  +++++++.
T Consensus       154 ~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~Ig~~~~igagsvv~~~--v~~~~~~~  209 (220)
T 4ea9_A          154 CHLGPASALAGGVSVGERAFLGVGARVIPGVTIGADTIVGAGGVVVRD--LPDSVLAI  209 (220)
T ss_dssp             CEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTCEEE
T ss_pred             CEECCCCEEcCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEEccc--cCCCcEEE
Confidence            333333444455666666667777777778888999999999998887  46666553

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A

Probab=99.58  E-value=7e-14  Score=109.95  Aligned_cols=51  Identities=24%  Similarity=0.340  Sum_probs=33.6

Q ss_pred             CEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEcc
Q 025890          153 VQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA  205 (246)
Q Consensus       153 ~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~  205 (246)
                      +.+.++++||++++++.++.+.++++||++|+||+++++.+++  .+++++..
T Consensus       138 ~~i~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Igagsvv~~~v--~~~~~~~G  188 (194)
T 3bfp_A          138 AKCAGNVKIGKNCFLGINSCVLPNLSLADDSILGGGATLVKNQ--DEKGVFVG  188 (194)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSCB--CSCCEECC
T ss_pred             CEECCCcEECCCCEEcCCCEECCCCEECCCCEECCCCEEcccc--CCCCEEEe
Confidence            3333455555556666666666678888888888888888774  45555543

>3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A

Probab=99.57  E-value=5.1e-15  Score=123.01  Aligned_cols=36  Identities=8%  Similarity=0.249  Sum_probs=30.4

Q ss_pred             ceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccC
Q 025890          176 SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDI  213 (246)
Q Consensus       176 ~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~  213 (246)
                      .++||++|+||++++|  ++.||++++|+++++|++|.
T Consensus       256 ~V~IGdnv~IGAnAtI--GVtIGd~~iIGAGSVVtkdt  291 (347)
T 3r5d_A          256 VISVGEGCLIGANAGI--GIPLGDRNIVEAGLYITAGT  291 (347)
T ss_dssp             CCEECTTCEECTTCEE--CSCBCTTCEECTTCEECTTC
T ss_pred             ceEECCCCEECCCCEE--eeEECCCCEECCCCEECCCC
Confidence            3888888888888888  88888888888888888764

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp}

Probab=99.54  E-value=5.2e-14  Score=124.65  Aligned_cols=168  Identities=18%  Similarity=0.261  Sum_probs=111.2

Q ss_pred             CcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeEEcC
Q 025890           27 SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDE  106 (246)
Q Consensus        27 ~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~  106 (246)
                      ...+++++.|++++.+.+++.|++++.|+++|.| .+++||++|.|+++|.|.++.||++|.|++++.|.          
T Consensus       273 ~~~I~~~a~I~p~a~i~g~v~IG~~~~I~~~a~I-~~v~IG~~~~I~~~~~I~~~vIG~~~~Ig~~a~I~----------  341 (496)
T 3c8v_A          273 GAGSASGASVSGYAVIKGDTVIGENVLVSQRAYL-DNAWMGKGSNAQENCYIINSRLERNCVTAHGGKII----------  341 (496)
T ss_dssp             ---CCTTCEECTTSEEESSCEECTTCEECTTCEE-EEEEECTTCEECTTCEEEEEEEEESCEECTTCEEE----------
T ss_pred             CcccCCCcEECCCcEEeCCeEECCCCEECCCcEE-eceEecCCCEECCCceEeceEeCCCCEECCCcEEc----------
Confidence            4566677778888888788888888888888888 68899999999999999999999999999999996          


Q ss_pred             CCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEe--cceEECCCeE
Q 025890          107 HGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIA--GSATIGDYVT  184 (246)
Q Consensus       107 ~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~--~~~~Ig~~~~  184 (246)
                                 .+.||+++.||++++|..+...                  .++||++|.|+.++.+.  .+..|++++.
T Consensus       342 -----------gv~IGd~v~IG~~a~I~~~~~~------------------~v~IG~~a~IGagsvV~~~~~~~I~~~s~  392 (496)
T 3c8v_A          342 -----------NAHLGDMIFTGFNSFLQGSESS------------------PLKIGDGCVVMPHTIIDLEEPLEIPAGHL  392 (496)
T ss_dssp             -----------SEEEEETCEECTTCEEECCSSS------------------CEEECTTCEECTTCEEECSSCEEECSSEE
T ss_pred             -----------CceECCCcEECCCCEEeCCCCc------------------ceEECCCCEECCCCEEecCCCcEeCCCCE
Confidence                       7899999999999988753211                  23444444444444444  4456666666


Q ss_pred             ECcCcEECCCcEECCCCE-EccCcEEeccCCCCC-eEEccCchhhHHHHHHhhh
Q 025890          185 LGGRVAVRDHVSIASKVR-LAANSCVFKDITEPG-DYGGFPAVPIHEWRRQVAN  236 (246)
Q Consensus       185 Ig~~~~v~~~~~ig~~~~-v~~~s~v~~~~~~~~-~~~g~p~~~~~~~~~~~~~  236 (246)
                      +++.  +.+...+..... ++..+.+.+.+..+. .+.+.+++..+.+.++..+
T Consensus       393 v~G~--v~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~  444 (496)
T 3c8v_A          393 VWGY--IRNKADLAAHSISFEEFAKVDGEVTMGRMTFRGKGGPFLDSFKKRIKR  444 (496)
T ss_dssp             ECSE--ESSHHHHHHSEEEHHHHTTCEEEEEETTEEEEEEHHHHHHHHHHHHHH
T ss_pred             EEEE--eccCccccccccccccHHHHHhHhccccceeecCHHHHHHHHHHHHHH
Confidence            6522  222222222211 112222233344444 4567888888887765544

>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A*

Probab=99.53  E-value=5.4e-14  Score=110.67  Aligned_cols=63  Identities=14%  Similarity=0.270  Sum_probs=46.9

Q ss_pred             CCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEE-ccCcEEeccCCC
Q 025890          151 NLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL-AANSCVFKDITE  215 (246)
Q Consensus       151 ~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v-~~~s~v~~~~~~  215 (246)
                      .+..+.+.+.||++|+|+.++.+..+++||++|.||++++|.++  +++++++ +..+.+.+.+.+
T Consensus       125 ~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~d--vp~~~v~~G~Pa~~i~~~~~  188 (195)
T 3nz2_A          125 AWETICKPIVIEDDVWIGGNVVINQGVTIGARSVVAANSVVNQD--VPPDTLVGGTPARILRSLKD  188 (195)
T ss_dssp             TCCCEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCSSEEEETTTTEEEEECC-
T ss_pred             ccceecCCeEECCCCEEcCCCEECCCCEECCCCEECCCCEEccc--cCCCcEEEccCCEEecccCh
Confidence            34455567777888888888888888999999999999999987  4677655 455666666553

>3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A

Probab=99.53  E-value=3.2e-14  Score=118.23  Aligned_cols=116  Identities=16%  Similarity=0.178  Sum_probs=63.7

Q ss_pred             cEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeEEcCC
Q 025890           28 ACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEH  107 (246)
Q Consensus        28 ~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~  107 (246)
                      ..+.+++.|++.+.|.+++.|++++.|+++++|..++.|+++|.|..++.+. +.||++|.|++++.|+...        
T Consensus       179 ~vI~~gv~I~P~AvI~~GA~IGeGv~Igp~a~Vn~na~IGdg~iI~~~a~ig-v~IGdnv~IgpGa~IgG~~--------  249 (347)
T 3r5d_A          179 YVVPAGVRIADTARVRLGAYIGEGTTVMHEGFVNFNAGTEGPGMIEGRVSAG-VFVGKGSDLGGGCSTMGTL--------  249 (347)
T ss_dssp             TCCCTTEEESSGGGBBTTEEECTTEEECTTCEECTTEEESSSEEECSEECTT-CEECTTEEECTTCEECC----------
T ss_pred             eeccCCcEECCcCEECCCCEECCCCEECCCCEECCCCEECCCcEEcCCceEe-EEECCCCEECCCCEEcccc--------
Confidence            4445555555555555555555555555555555555555555555444333 5555555555555554210        


Q ss_pred             CceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECc
Q 025890          108 GNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGG  187 (246)
Q Consensus       108 ~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~  187 (246)
                                                ..                  .-...+.||++|+|+.++.+  ++.||++|.||+
T Consensus       250 --------------------------~~------------------~~~~~V~IGdnv~IGAnAtI--GVtIGd~~iIGA  283 (347)
T 3r5d_A          250 --------------------------SG------------------GGNIVISVGEGCLIGANAGI--GIPLGDRNIVEA  283 (347)
T ss_dssp             ------------------------------------------------CCCCEECTTCEECTTCEE--CSCBCTTCEECT
T ss_pred             --------------------------CC------------------CCccceEECCCCEECCCCEE--eeEECCCCEECC
Confidence                                      00                  00123444444444444444  578888888888


Q ss_pred             CcEECCCcEEC
Q 025890          188 RVAVRDHVSIA  198 (246)
Q Consensus       188 ~~~v~~~~~ig  198 (246)
                      +++|.++++|.
T Consensus       284 GSVVtkdt~I~  294 (347)
T 3r5d_A          284 GLYITAGTKVA  294 (347)
T ss_dssp             TCEECTTCEEE
T ss_pred             CCEECCCCEEE
Confidence            88888888874

>3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A*

Probab=99.53  E-value=1.1e-13  Score=108.54  Aligned_cols=60  Identities=23%  Similarity=0.354  Sum_probs=44.8

Q ss_pred             CEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEE-ccCcEEeccCC
Q 025890          153 VQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL-AANSCVFKDIT  214 (246)
Q Consensus       153 ~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v-~~~s~v~~~~~  214 (246)
                      ..+...+.||++|+|+.++.+.++++||++|+||++++|.++  |++++++ +..+.+.|.++
T Consensus       129 ~~~~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~d--vp~~~v~~G~Pa~~i~~~~  189 (190)
T 3hjj_A          129 KEYGKPVKIGNNVWVGGGAIINPGVSIGDNAVIASGAVVTKD--VPNNVVVGGNPAKVIKTIE  189 (190)
T ss_dssp             EEEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEETTTTEEEEECC
T ss_pred             ccccCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECcc--cCCCCEEEccCCEEeccCC
Confidence            344566777777777777777888999999999999999987  5677755 44466666554

>3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A*

Probab=99.51  E-value=8.2e-14  Score=114.98  Aligned_cols=38  Identities=24%  Similarity=0.513  Sum_probs=24.6

Q ss_pred             CcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEE
Q 025890          158 NVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI  197 (246)
Q Consensus       158 ~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~i  197 (246)
                      .+.||++|+|+.++.+  ++.||++|.||++++|.++++|
T Consensus       233 ~V~IGDnv~IGanAtI--gVtIGd~~iIGAGSVVtkdt~I  270 (332)
T 3fsy_A          233 VISIGKRCLLGANSGL--GISLGDDCVVEAGLYVTAGTRV  270 (332)
T ss_dssp             BCEECTTCEECTTCEE--CSCBCSSCEECTTCEECTTCEE
T ss_pred             ceEECCCCEECCCCEE--eeEECCCCEECCCCEECCCCEE
Confidence            3444444444444444  5777777888888888777777

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*

Probab=99.49  E-value=4.5e-14  Score=124.80  Aligned_cols=124  Identities=14%  Similarity=0.146  Sum_probs=77.5

Q ss_pred             eccCcEECCCcEEcCCcEEC----cCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCC-------------
Q 025890           24 FHQSACIDSTVLIEVGAIVH----SKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDS-------------   86 (246)
Q Consensus        24 i~~~~~i~~~~~I~~~a~I~----~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~-------------   86 (246)
                      +++++.+++++.|++++.|.    .++.|++++.|+. |.+. +++||++|.|++++.|.++.+..+             
T Consensus       305 ~~~~~~i~~~~~i~~~~~i~~~~I~~~~Ig~~~~I~~-~~i~-~~~Ig~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~  382 (451)
T 1yp2_A          305 YDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLA  382 (451)
T ss_dssp             CCSSSCCCCCCCCCCCEEEEEEEEEEEEECTTCEEEE-EEEE-SCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHH
T ss_pred             cCCCCeeccCCccCCCeEEcceEEeCeEECCCCEEcc-eEEe-ccEECCCCEECCCCEEcCceEECCCCccccccccccc
Confidence            34444444444444444440    3355555555543 4454 788888888888888876666555             


Q ss_pred             ------cEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcE
Q 025890           87 ------CIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVA  160 (246)
Q Consensus        87 ------~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~  160 (246)
                            +.|++++.|+                     ++.||+++.||+++++...                ..+..+.+
T Consensus       383 ~~g~~~~~Ig~~~~i~---------------------~~~Ig~~~~IG~~~~i~~~----------------~~~~~~~~  425 (451)
T 1yp2_A          383 AKGSVPIGIGKNCHIK---------------------RAIIDKNARIGDNVKIINK----------------DNVQEAAR  425 (451)
T ss_dssp             TTTCCCSEECTTCEEE---------------------SEEECTTCEECTTCEECCS----------------SCCSCEEE
T ss_pred             ccCceeEEECCCCEEe---------------------ccEeCCCcEECCCCEEeCC----------------cccccCce
Confidence                  7888888775                     7788888888888777643                11212224


Q ss_pred             ECCCcEEccceeEecceEECCCeEECcCcEE
Q 025890          161 IGKSCMLCGQVGIAGSATIGDYVTLGGRVAV  191 (246)
Q Consensus       161 Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v  191 (246)
                      ||++++|+.++     ++||++++||++++|
T Consensus       426 ig~~~~ig~~~-----v~Ig~~a~i~agsvv  451 (451)
T 1yp2_A          426 ETDGYFIKSGI-----VTVIKDALIPSGIII  451 (451)
T ss_dssp             GGGTEEEETTE-----EEECTTCEECTTCBC
T ss_pred             eCCCEEEcCCE-----EEECCCcEECCCccC
Confidence            55555555443     678888888887754

>2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A*

Probab=99.49  E-value=3.5e-13  Score=107.60  Aligned_cols=135  Identities=18%  Similarity=0.218  Sum_probs=91.2

Q ss_pred             CcEECCCcEEcCC-cEECcC---cEECCCcEECCCCEECC---CcEECCCCEECCceEE----eccEECCCcEECCCeEE
Q 025890           27 SACIDSTVLIEVG-AIVHSK---AVLGANVCIGSGTVVGP---AVTIGQSTNIGFNVAL----SNCIIGDSCIIHNGVCI   95 (246)
Q Consensus        27 ~~~i~~~~~I~~~-a~I~~~---~~i~~~~~Ig~~~~i~~---~~~ig~~~~I~~~~~I----~~~~Ig~~~~I~~~~~i   95 (246)
                      ..++++++.|... +.|.++   +.|++++.|++++.+..   ++.||++|.|++.+++    ..+.||++|.|++++.|
T Consensus        36 ~v~Ig~~~~I~~~~~~i~g~~~~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~Ig~~~ii~~~~~~i~IG~~~~Ig~~~~I  115 (215)
T 2wlg_A           36 SVYIGNNCKIVSSNIRLKGNNITLFIADDVEIMGLVCSLHSDCSLQIQAKTTMGNGEITIAEKGKISIGKDCMLAHGYEI  115 (215)
T ss_dssp             EEEECTTCEEESCEEEEESSSCEEEECTTCEEESEEEEECTTCEEEECTTCEECSEEEEECTTCEEEECTTCEECTTEEE
T ss_pred             EEEECCCCEEeCceEEEEcCCCEEEECCCCEECCCeEEEcCCceEEEcCCCEECCEEEEEeCCCCEEECCCCEEcCCEEE
Confidence            3566666666655 455543   77888888888888863   4899999999996666    56889999999999988


Q ss_pred             CCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEec
Q 025890           96 GQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAG  175 (246)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~  175 (246)
                      .....                 +..            ...      ..+...      ....++.||++++|+.++.+.+
T Consensus       116 ~~~~~-----------------h~~------------~~~------~~~~~~------~~~~~v~Igd~v~IG~~~~I~~  154 (215)
T 2wlg_A          116 RNTDM-----------------HPI------------YSL------ENGERI------NHGKDVIIGNHVWLGRNVTILK  154 (215)
T ss_dssp             ESCCS-----------------SCE------------EET------TTCBBC------CCCCCEEECTTCEECTTCEECT
T ss_pred             ECCCC-----------------ccc------------ccc------cccccc------cCCCCeEECCCcEECCCCEECC
Confidence            63100                 000            000      000000      1124566666666666667777


Q ss_pred             ceEECCCeEECcCcEECCCcEECCCCEEc
Q 025890          176 SATIGDYVTLGGRVAVRDHVSIASKVRLA  204 (246)
Q Consensus       176 ~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~  204 (246)
                      +++||++|.|+++++|.++  ++++++++
T Consensus       155 gv~Ig~~~vIgagsvV~~~--vp~~~i~~  181 (215)
T 2wlg_A          155 GVCIPNNVVVGSHTVLYKS--FKEPNCVI  181 (215)
T ss_dssp             TCEECSSCEECTTCEECSC--CCCCSCEE
T ss_pred             CCEECCCCEECCCCEEcCc--cCCCeEEE
Confidence            8999999999999999986  57888776

>3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A

Probab=99.47  E-value=2.1e-13  Score=107.59  Aligned_cols=60  Identities=20%  Similarity=0.305  Sum_probs=45.7

Q ss_pred             EEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEE-ccCcEEeccCCC
Q 025890          154 QIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL-AANSCVFKDITE  215 (246)
Q Consensus       154 ~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v-~~~s~v~~~~~~  215 (246)
                      .+...++||++|+|+.++.+.++++||++|+||++++|.++  +++++++ +..+.+.+.+.+
T Consensus       126 ~~~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~d--vp~~~v~~G~Pak~i~~~~~  186 (199)
T 3ftt_A          126 EKAGPIHIGSNTWFGGHVAVLPGVTIGEGSVIGAGSVVTKD--IPPHSLAVGNPCKVVRKIDN  186 (199)
T ss_dssp             EEECCEEECSSEEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEETTTTEEEEECCC
T ss_pred             eecCCeEEcCCcEEcCCCEECCCCEECCCCEECCCCEECcc--cCCCCEEEEECCEEEeeCCh
Confidence            44566777777777777788888999999999999999987  4677765 445666666654

>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A*

Probab=99.46  E-value=8.6e-13  Score=104.15  Aligned_cols=60  Identities=23%  Similarity=0.335  Sum_probs=47.5

Q ss_pred             CEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEE-ccCcEEeccCC
Q 025890          153 VQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL-AANSCVFKDIT  214 (246)
Q Consensus       153 ~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v-~~~s~v~~~~~  214 (246)
                      ..+.+++.||++|+|+.++.+.++++||++|+||++++|.++  |++++++ +..+.+.+.+.
T Consensus       126 ~~~~~~v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~~d--vp~~~vv~G~PArvik~~~  186 (203)
T 1krr_A          126 EMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSIVTKD--IPPNVVAAGVPCRVIREIN  186 (203)
T ss_dssp             CBEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEETTTTEEEEECC
T ss_pred             ceeCCCcEECCCeEECCCCEEeCCeEECCCCEECCCCEECCC--cCCCcEEEccCcEEeccCC
Confidence            445677888888888888888899999999999999999987  6788765 44466666554

>2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A

Probab=99.46  E-value=9.1e-13  Score=102.70  Aligned_cols=111  Identities=23%  Similarity=0.309  Sum_probs=82.6

Q ss_pred             eccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccC
Q 025890           79 SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHN  158 (246)
Q Consensus        79 ~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~  158 (246)
                      .++.||+++.|..++.|...                  ..+.||+++.|++++.|....+ +   .+......+..+.++
T Consensus        73 ~~v~IG~~~~i~~~~~i~~~------------------~~i~IG~~v~Ig~~v~I~~~~h-~---~~~~~~~~~~~~~~~  130 (185)
T 2p2o_A           73 YNIHVGENFFMNFDGVILDV------------------CEVRIGDHCFIGPGVHIYTATH-P---LDPHERNSGLEYGKP  130 (185)
T ss_dssp             TTEEECTTEEECSSEEEECS------------------SCEEECTTCEECTTCEEECEEC-C---SSHHHHHTCCBEECC
T ss_pred             CCEEECCeeEEcCCeEEEec------------------cceEECCCcEEeCCCEEEcCCC-c---CChhhcccCccccCC
Confidence            57888888888888887421                  2789999999999999964211 0   000001123455678


Q ss_pred             cEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccC-cEEeccC
Q 025890          159 VAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN-SCVFKDI  213 (246)
Q Consensus       159 ~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~-s~v~~~~  213 (246)
                      +.||++|+|++++.+.++++||++|+||++++|.++  |+++++++.. +.+.|++
T Consensus       131 v~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~~~--vp~~~vv~G~Pa~vi~~i  184 (185)
T 2p2o_A          131 VVIGHNVWIGGRAVINPGVTIGDNAVIASGAVVTKD--VPANAVVGGNPAKVIKWL  184 (185)
T ss_dssp             EEECSSCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEEETTEEEEEEC
T ss_pred             eEEcCCeEECCCCEECCCCEECCCCEECCCCEECCC--CCCCcEEEcccCEEeeec
Confidence            888888888888888999999999999999999988  7799888766 6666654

>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A

Probab=99.45  E-value=2.7e-13  Score=113.35  Aligned_cols=59  Identities=15%  Similarity=0.242  Sum_probs=37.0

Q ss_pred             CcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEE-ccCcEEeccCCCC
Q 025890          158 NVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL-AANSCVFKDITEP  216 (246)
Q Consensus       158 ~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v-~~~s~v~~~~~~~  216 (246)
                      +++||++|+|+.++.+.++++||++|+||++++|.+++..+..+++ +..+.+.|++++.
T Consensus       223 ~~~IGd~v~IGaga~Ilggv~IG~~a~IGagsvV~~dVp~gs~vvi~G~PAkvik~~~~~  282 (313)
T 3q1x_A          223 HPTVGDYVTIGTGAKVLGNIIVGSHVRIGANCWIDRDVDSNQTVYISEHPTHFVKPCTTK  282 (313)
T ss_dssp             SCEECSSCEECTTCEEESSCEECSSEEECTTCEECSCBCSSEEC----------------
T ss_pred             CCEECCCCEECCCCEECCCcEECCCCEECCCCEECCCcCCCCEEEEcCCCcEEEeeCccc
Confidence            4577788888888888899999999999999999999766555555 7888888887754

>3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A*

Probab=99.43  E-value=7.6e-13  Score=103.49  Aligned_cols=60  Identities=30%  Similarity=0.434  Sum_probs=45.2

Q ss_pred             CEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCE-EccCcEEeccCC
Q 025890          153 VQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVR-LAANSCVFKDIT  214 (246)
Q Consensus       153 ~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~-v~~~s~v~~~~~  214 (246)
                      ..+...++||++|+|+.++.+..+++||++|+||++++|.++  |+++++ ++..+.+.|.++
T Consensus       127 ~~~~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~d--vp~~~v~~G~Pa~vi~~i~  187 (188)
T 3srt_A          127 IEYGSPVKIGDNVWIGGGVIITPGITIGDNVVIGAGSVVTKD--IPPNTVAVGNPCRVIKKIE  187 (188)
T ss_dssp             EEEECCEEECSSCEECTTCEECTTCEECSSEEECTTCEECSC--BCSSEEEETTTTEEEEECC
T ss_pred             ceECCCcEECCCcEEcCCCEECCCcEECCCCEECCCCEECcc--cCCCCEEEccCCEEeccCC
Confidence            344566777777777777777888999999999999999987  456664 455677777664

>2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni}

Probab=99.39  E-value=3.4e-13  Score=115.06  Aligned_cols=42  Identities=12%  Similarity=0.176  Sum_probs=38.3

Q ss_pred             eEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEc
Q 025890          177 ATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGG  221 (246)
Q Consensus       177 ~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g  221 (246)
                      ++||++|+||.+++  +++.||++++|+++++|+++++.+.. .|
T Consensus       291 VvIGdnv~IGagAv--~GV~IGdgavIGAGsVVt~dv~i~~~-~G  332 (387)
T 2rij_A          291 ISVGKACLLGANSV--TGIPLGDNCIVDAGIAVLEGTKFLLK-DA  332 (387)
T ss_dssp             CEECTTCEECTTCE--ECSCBCTTCEECTTCEECTTCEEEEC-CH
T ss_pred             eEEeCCCEECCCCc--CCcEECCCCEECCCCEECCCceeeec-CC
Confidence            89999999999999  99999999999999999999987665 45

>1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3

Probab=99.39  E-value=6.7e-12  Score=97.51  Aligned_cols=104  Identities=19%  Similarity=0.272  Sum_probs=77.3

Q ss_pred             eccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccC
Q 025890           79 SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHN  158 (246)
Q Consensus        79 ~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~  158 (246)
                      .++.||+++.|.+++.|...                  ..+.||+++.|++++.|....+ +...+   .-..+..+.++
T Consensus        71 ~~v~IG~~~~I~~~~~i~~~------------------~~i~IG~~v~Ig~~v~I~~~~h-~~~~~---~~~~~~~~~~~  128 (182)
T 1ocx_A           71 YNIFLGNNFFANFDCVMLDV------------------CPIRIGDNCMLAPGVHIYTATH-PIDPV---ARNSGAELGKP  128 (182)
T ss_dssp             TTEEECSSEEECSSEEEECS------------------SCEEECTTCEECTTCEEECEEC-CSSHH---HHTTTCBEECC
T ss_pred             CCEEECCCcEEeCCeEEEec------------------cceEEcCCcEEeCCcEEEeCCC-ccChh---hcccCccccCC
Confidence            57888899988888888521                  2789999999999999964211 00000   00123445678


Q ss_pred             cEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccC
Q 025890          159 VAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN  206 (246)
Q Consensus       159 ~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~  206 (246)
                      +.||++|+|+.++.+.++++||++|+||++++|.++  |+++++++..
T Consensus       129 v~IG~~v~Ig~~a~I~~gv~IG~~~vIgagsvV~~d--ip~~~vv~G~  174 (182)
T 1ocx_A          129 VTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKD--VPDNVVVGGN  174 (182)
T ss_dssp             EEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCSSEEEETT
T ss_pred             eEEeCCeEECCCCEECCCcEECCCCEECCCCEECCc--CCCCcEEEcc
Confidence            888888999999999999999999999999999987  6788766543

>4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A

Probab=99.37  E-value=2e-12  Score=103.63  Aligned_cols=50  Identities=20%  Similarity=0.328  Sum_probs=41.0

Q ss_pred             EccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccC
Q 025890          155 IGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN  206 (246)
Q Consensus       155 i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~  206 (246)
                      +.+++.||++|+|+.++.+..+++||++|.||++++|.++  ++++++++..
T Consensus       116 ~~g~v~IG~~v~IG~~a~I~~gv~IG~gavIgagsvV~~d--Vp~~~vv~G~  165 (220)
T 4hur_A          116 LKGDIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTKN--VAPYSIVGGN  165 (220)
T ss_dssp             CCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEETT
T ss_pred             ccCCeEECCCcEECCCCEEeCCCEECCCCEEcCCCEEccc--CCCCcEEeCC
Confidence            4567788888888888888889999999999999999987  5677766543

>2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni}

Probab=99.27  E-value=1.5e-11  Score=104.91  Aligned_cols=40  Identities=23%  Similarity=0.439  Sum_probs=29.4

Q ss_pred             cEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCC
Q 025890          159 VAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASK  200 (246)
Q Consensus       159 ~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~  200 (246)
                      +.||++|+|+.++.  .+++||++|.||++++|.+++.+...
T Consensus       291 VvIGdnv~IGagAv--~GV~IGdgavIGAGsVVt~dv~i~~~  330 (387)
T 2rij_A          291 ISVGKACLLGANSV--TGIPLGDNCIVDAGIAVLEGTKFLLK  330 (387)
T ss_dssp             CEECTTCEECTTCE--ECSCBCTTCEECTTCEECTTCEEEEC
T ss_pred             eEEeCCCEECCCCc--CCcEECCCCEECCCCEECCCceeeec
Confidence            45555555555555  56889999999999999999888665

>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3

Probab=99.26  E-value=5.8e-12  Score=100.31  Aligned_cols=52  Identities=15%  Similarity=0.169  Sum_probs=42.4

Q ss_pred             CCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEcc
Q 025890          152 LVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA  205 (246)
Q Consensus       152 ~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~  205 (246)
                      ++.+.+++.||++|+|+.++.+.++++||++|.||++++|.++  |+++++++.
T Consensus       105 ~~~~~g~v~IG~~v~IG~~a~I~~gv~IG~~~iIgagsvV~~d--Vp~~~vv~G  156 (212)
T 3eev_A          105 GFTRSGDTIIGHDVWIGTEAMIMPGVKIGHGAIIASRSVVTKD--VAPYEVVGS  156 (212)
T ss_dssp             CCCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEET
T ss_pred             CcccCCCeEECCCCEECCCCEEcCCCEECCCCEECCCCEEccc--cCCCcEEEe
Confidence            3445577888888888888888999999999999999999977  567776643

>4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus}

Probab=99.26  E-value=6.7e-12  Score=100.19  Aligned_cols=52  Identities=17%  Similarity=0.275  Sum_probs=42.6

Q ss_pred             CCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEcc
Q 025890          152 LVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA  205 (246)
Q Consensus       152 ~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~  205 (246)
                      ...+.+++.||++++|+.++.+.++++||++|.|+++++|.++  ++++++++.
T Consensus       112 ~~~~~g~v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV~~d--v~~~~~~~G  163 (219)
T 4e8l_A          112 DLPLKGDIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTKN--VAPYSIVGG  163 (219)
T ss_dssp             TSCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEET
T ss_pred             cccccCCcEECCCeEECCCCEEcCCCEECCCCEECCCCEEccc--CCCCeEEEe
Confidence            4455677888888888888888999999999999999999986  467776643

>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A*

Probab=99.19  E-value=1.2e-11  Score=98.11  Aligned_cols=55  Identities=20%  Similarity=0.197  Sum_probs=43.9

Q ss_pred             ECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEcc
Q 025890          149 IDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA  205 (246)
Q Consensus       149 v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~  205 (246)
                      +...+.+.+++.||++|+|+.++.+.++++||++|.|+++++|.++  ++++++++.
T Consensus       104 i~~~~~~~~~v~Ig~~v~IG~~a~I~~gv~Ig~~~~Igags~V~~~--v~~~~i~~G  158 (209)
T 1mr7_A          104 KLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKD--IAPYMLAGG  158 (209)
T ss_dssp             CGGGSCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEEE
T ss_pred             ccccccccCCcEECCCCEEcCCCEEcCCCEECCCCEEcCCCEEcCC--CCCCeEEEe
Confidence            3344556677888888888888888999999999999999999987  567776643

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}

Probab=99.18  E-value=8.5e-11  Score=102.86  Aligned_cols=123  Identities=14%  Similarity=0.042  Sum_probs=59.4

Q ss_pred             EEeechhhhhhhcccCCCceecc-CcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccE
Q 025890            4 YVSDIESRQQFQKWHNGGGIFHQ-SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCI   82 (246)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~i~~-~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~   82 (246)
                      ||.++++.+.|.+.......-.. .....++..|...+.+++++.++++ .++.++.+ .++.||++|.| +++.|.++.
T Consensus       266 ~~~dI~t~~d~~~a~~~ll~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~-~~~~~~~i-~~~~ig~~~~I-~~~~i~~~~  342 (420)
T 3brk_X          266 YWRDVGTIDAYWQANIDLTDVVPDLDIYDKSWPIWTYAEITPPAKFVHD-DEDRRGSA-VSSVVSGDCII-SGAALNRSL  342 (420)
T ss_dssp             CEECCCSHHHHHHHHHHTTSSSCSSCTTCCSSCCCCCCCCCCCCEEECB-CSSCBCEE-ESCEECSSCEE-ESCEEESCE
T ss_pred             EEEECCCHHHHHHHHHHHhCCCchhhcCCCCCceeeccccCCCcEEecc-cccCCcEe-cCCEECCCCEE-cCCEEeCcE
Confidence            79999999887554331110000 0001112222223333333333221 01224444 34555555555 455555566


Q ss_pred             ECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEE
Q 025890           83 IGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQI  155 (246)
Q Consensus        83 Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i  155 (246)
                      ||++|.|++++.|.                     +++|++++.|+++++|..     +.||+++.++.++.+
T Consensus       343 ig~~~~I~~~~~i~---------------------~~~i~~~~~i~~~~~i~~-----~~ig~~~~i~~~~~i  389 (420)
T 3brk_X          343 LFTGVRANSYSRLE---------------------NAVVLPSVKIGRHAQLSN-----VVIDHGVVIPEGLIV  389 (420)
T ss_dssp             ECTTCEECTTCEEE---------------------EEEECTTCEECTTCEEEE-----EEECTTCEECTTCEE
T ss_pred             EcCCCEECCCCEEc---------------------ceEEcCCCEECCCCEEec-----eEECCCCEECCCCEE
Confidence            66666666666664                     566666666666666661     455555544444444

>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482}

Probab=99.17  E-value=1.8e-10  Score=96.12  Aligned_cols=35  Identities=14%  Similarity=0.208  Sum_probs=19.7

Q ss_pred             ceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEc
Q 025890          118 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIG  156 (246)
Q Consensus       118 ~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~  156 (246)
                      +..||+++.|+++++|..    ++.||+++.|+.++.+.
T Consensus       251 ~~~IGd~V~IGaga~Il~----gv~IGd~a~IGagsvV~  285 (310)
T 3f1x_A          251 HPILEDDVIVYSNATILG----RVTIGKGATVGGNIWVT  285 (310)
T ss_dssp             SCEECTTCEECTTCEEES----SCEECTTCEECSSCEEC
T ss_pred             CCEECCCcEEcCCCEECC----CcEECCCCEECCCCEEC
Confidence            446666666666666653    35555555555555554

>3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus}

Probab=99.12  E-value=3.6e-10  Score=93.16  Aligned_cols=36  Identities=25%  Similarity=0.307  Sum_probs=29.7

Q ss_pred             ccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcC
Q 025890           80 NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDR  135 (246)
Q Consensus        80 ~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~  135 (246)
                      .++||++|.|++++.|..                    ++.||+++.|++++++..
T Consensus       216 ~~~IGd~v~IGaga~Il~--------------------gv~IG~~a~IGagsvV~k  251 (287)
T 3mc4_A          216 HPKIRQGVLIGAGAKILG--------------------NIQVGQCSKIAAGSVVLK  251 (287)
T ss_dssp             SCEECTTCEECTTCEEES--------------------SCEECTTCEECTTCEECS
T ss_pred             CCEECCCCEECCCCEECC--------------------CcEECCCCEECCCCEEcc
Confidence            468888888888888864                    788899999999888884

>1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6

Probab=99.08  E-value=1.3e-09  Score=90.07  Aligned_cols=53  Identities=13%  Similarity=0.225  Sum_probs=41.0

Q ss_pred             cCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEE-ccCcEEec
Q 025890          157 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL-AANSCVFK  211 (246)
Q Consensus       157 ~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v-~~~s~v~~  211 (246)
                      .+++||++++|+.++.+.++++||++|.||++++|.++  |++++++ +..+.+.+
T Consensus       208 ~~~~IGd~v~IGaga~Ilggv~IG~~a~IGagsvV~~d--Vp~~s~v~G~PAr~i~  261 (289)
T 1t3d_A          208 RHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQP--VPPHTTAAGVPARIVG  261 (289)
T ss_dssp             CSCEECTTCEECTTCEEESSCEECTTCEECTTCEECSC--BCTTCEEETTTTEEEE
T ss_pred             CCeEECCCeEECCCCEEecCcEECCCCEECCCCEEccC--CCCCCEEEecCCEEeC
Confidence            45778888888888888899999999999999999987  4566655 44444443

>1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A*

Probab=99.03  E-value=2.9e-09  Score=87.10  Aligned_cols=19  Identities=37%  Similarity=0.524  Sum_probs=10.8

Q ss_pred             ceEECCCcEECcccEEcCC
Q 025890          118 NARIGNHVEIGANSCIDRG  136 (246)
Q Consensus       118 ~~~Ig~~~~ig~~~~i~~~  136 (246)
                      ++.||+++.|++++++...
T Consensus       207 gv~IG~~a~IGagsvV~~d  225 (267)
T 1ssq_A          207 NIEVGKYAKIGANSVVLNP  225 (267)
T ss_dssp             SCEECTTCEECTTCEECSC
T ss_pred             CcEECCCCEECCCCEEccC
Confidence            5556666666666655543

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}

Probab=98.93  E-value=2.9e-09  Score=93.07  Aligned_cols=77  Identities=14%  Similarity=0.252  Sum_probs=44.7

Q ss_pred             ceEEeccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCE
Q 025890           75 NVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQ  154 (246)
Q Consensus        75 ~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~  154 (246)
                      ++.+.++.||++|.| .++.|.                     ++.||+++.|++++.|.                    
T Consensus       319 ~~~i~~~~ig~~~~I-~~~~i~---------------------~~~ig~~~~I~~~~~i~--------------------  356 (420)
T 3brk_X          319 RGSAVSSVVSGDCII-SGAALN---------------------RSLLFTGVRANSYSRLE--------------------  356 (420)
T ss_dssp             BCEEESCEECSSCEE-ESCEEE---------------------SCEECTTCEECTTCEEE--------------------
T ss_pred             CcEecCCEECCCCEE-cCCEEe---------------------CcEEcCCCEECCCCEEc--------------------
Confidence            555566666666666 666653                     55666666666665553                    


Q ss_pred             EccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEE
Q 025890          155 IGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI  197 (246)
Q Consensus       155 i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~i  197 (246)
                         ++.|++++.|+.++.+.+ ++||++|.|++++++..+...
T Consensus       357 ---~~~i~~~~~i~~~~~i~~-~~ig~~~~i~~~~~i~~~~~~  395 (420)
T 3brk_X          357 ---NAVVLPSVKIGRHAQLSN-VVIDHGVVIPEGLIVGEDPEL  395 (420)
T ss_dssp             ---EEEECTTCEECTTCEEEE-EEECTTCEECTTCEESSCHHH
T ss_pred             ---ceEEcCCCEECCCCEEec-eEECCCCEECCCCEEeCCCCC
Confidence               334444444444444444 667777777777777665443

>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A*

Probab=98.91  E-value=6.9e-09  Score=82.25  Aligned_cols=59  Identities=14%  Similarity=0.152  Sum_probs=45.8

Q ss_pred             CCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEcc-CcEEe
Q 025890          150 DNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA-NSCVF  210 (246)
Q Consensus       150 ~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~-~s~v~  210 (246)
                      +.++.+...++||++|+|+.++.+..+++||++|.||++++|.++  |+++++++. .+.+.
T Consensus       102 ~~~~~~~~~v~IG~~v~IG~~a~I~~gv~Ig~~~~IgagsvV~~~--vp~~~~~~G~Pa~~i  161 (212)
T 1xat_A          102 VNGYQPAGDTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTGD--VEPYAIVGGNPARTI  161 (212)
T ss_dssp             CCCCCCCCCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEETTTTEEE
T ss_pred             ccCceecCCeEECCCCEECCCCEEeCCCEECCCCEECCCCEEccc--CCCCcEEEccCCEEE
Confidence            344555667888888888888888999999999999999999986  577776643 34443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	246
d2jf2a1	262	b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltra	9e-26
d2jf2a1	262	b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltra	4e-06
d2f9ca1	320	b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salm	2e-22
d1j2za_	259	b.81.1.1 (A:) UDP N-acetylglucosamine acyltransfer	7e-18
d1j2za_	259	b.81.1.1 (A:) UDP N-acetylglucosamine acyltransfer	0.001
d1j2za_	259	b.81.1.1 (A:) UDP N-acetylglucosamine acyltransfer	0.001
d1j2za_	259	b.81.1.1 (A:) UDP N-acetylglucosamine acyltransfer	0.004
d2oi6a1	201	b.81.1.4 (A:252-452) N-acetylglucosamine 1-phospha	1e-16
d1mr7a_	203	b.81.1.3 (A:) Xenobiotic acetyltransferase {Entero	1e-14
d1xata_	208	b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudo	2e-13
d1xata_	208	b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudo	3e-04
d1ocxa_	182	b.81.1.3 (A:) Maltose O-acetyltransferase {Escheri	3e-12
d1g97a1	196	b.81.1.4 (A:252-447) N-acetylglucosamine 1-phospha	6e-10
d1krra_	200	b.81.1.3 (A:) Galactoside acetyltransferase {Esche	3e-09
d1ssqa_	241	b.81.1.6 (A:) Serine acetyltransferase {Haemophilu	2e-08
d1v3wa_	173	b.81.1.5 (A:) Ferripyochelin binding protein {Arch	2e-06
d1v3wa_	173	b.81.1.5 (A:) Ferripyochelin binding protein {Arch	0.001
d1fxja1	78	b.81.1.4 (A:252-329) N-acetylglucosamine 1-phospha	1e-05
d1fxja1	78	b.81.1.4 (A:252-329) N-acetylglucosamine 1-phospha	1e-04
d3tdta_	274	b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytra	3e-05
d3tdta_	274	b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytra	7e-05
d1yp2a1	135	b.81.1.4 (A:317-451) Glucose-1-phosphate adenylylt	3e-05
d1yp2a1	135	b.81.1.4 (A:317-451) Glucose-1-phosphate adenylylt	6e-05
d1qrea_	210	b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon M	2e-04
d1qrea_	210	b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon M	4e-04
d3bswa1	193	b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylo	0.001
d1xhda_	172	b.81.1.5 (A:) Putative acetyltransferase/acyltrans	0.004

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} Length = 262

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

 Score = 99.6 bits (247), Expect = 9e-26
 Identities = 53/218 (24%), Positives = 87/218 (39%), Gaps = 10/218 (4%)

Query: 30  IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCII 89
           ID +  +   AIV   A +GAN  IG   +VGP V IG+ T +      S+ ++     I
Sbjct: 2   IDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLK-----SHVVVNGHTKI 56

Query: 90  HNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGS---WRDTVIGDH 146
                I Q      V++      +P  +   IG+   I  +  I RG+      T +G  
Sbjct: 57  GRDNEIYQFASIGEVNQDLKYAGEPTRVE--IGDRNRIRESVTIHRGTVQGGGLTKVGSD 114

Query: 147 SKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN 206
           + +     I H+  +G  C+L     +AG  ++ D+  +GG  AV     I + V +   
Sbjct: 115 NLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIGAHVMVGGC 174

Query: 207 SCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRSSKKR 244
           S V +D+       G  A P       +  +  S +  
Sbjct: 175 SGVAQDVPPYVIAQGNHATPFGVNIEGLKRRGFSREAI 212

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} Length = 262

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

 Score = 44.5 bits (104), Expect = 4e-06
 Identities = 22/141 (15%), Positives = 41/141 (29%), Gaps = 24/141 (17%)

Query: 82  IIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDT 141
           +I  S  +H    + +                     A IG +  IG    +        
Sbjct: 1   MIDKSAFVHPTAIVEE--------------------GASIGANAHIGPFCIVG----PHV 36

Query: 142 VIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKV 201
            IG+ + + + V +  +  IG+   +     I        Y     RV + D   I   V
Sbjct: 37  EIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESV 96

Query: 202 RLAANSCVFKDITEPGDYGGF 222
            +   +     +T+ G     
Sbjct: 97  TIHRGTVQGGGLTKVGSDNLL 117

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} Length = 320

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

 Score = 91.4 bits (226), Expect = 2e-22
 Identities = 32/258 (12%), Positives = 74/258 (28%), Gaps = 54/258 (20%)

Query: 23  IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCI 82
           I+ ++A   +   I   A +     L  NV IG    +  A     +         S+ +
Sbjct: 59  IYDENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSV 118

Query: 83  IG------DSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGAN------ 130
                   D+ +++    +   G      +   +  +  + ++RI + V++  N      
Sbjct: 119 REECAIYGDARVLNQSEILAIQGLTHEHAQILQIYDRATVNHSRIVHQVQLYGNATITHA 178

Query: 131 SCIDRGSWRDTVI-----------------------------------------GDHSKI 149
               R    D  +                                          +H+ I
Sbjct: 179 FIEHRAEVFDFALIEGDKDNNVWICDCAKVYGHARVIAGTEEDAIPTLRYSSQVAEHALI 238

Query: 150 DNLVQIGHNVAIGKSCMLCG-QVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSC 208
           +    + H+V +G    + G  + +     I  +  + G + +   V I+ +  + A   
Sbjct: 239 EGNCVLKHHVLVGGHAEVRGGPILLDDRVLIEGHACIQGEILIERQVEISGRAAVIAFDD 298

Query: 209 VFKDITEPGDYGGFPAVP 226
               +  P    G   + 
Sbjct: 299 NTIHLRGPKVINGEDRIT 316

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} Length = 259

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

 Score = 78.2 bits (191), Expect = 7e-18
 Identities = 51/204 (25%), Positives = 80/204 (39%), Gaps = 6/204 (2%)

Query: 40  AIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCIGQD 98
           AI+  KA +   V IG   V+G  V + +   +  NV L  +  +G +  I     +G  
Sbjct: 7   AIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQ 66

Query: 99  GFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHN 158
                     + L   +          E    +    G  + T+IGD + +   V + H+
Sbjct: 67  PQDLKYKGEYSELIIGE-----DNLIREFCMINPGTEGGIKKTLIGDKNLLMAYVHVAHD 121

Query: 159 VAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGD 218
             IG  C+L   V +AG   IGDYV +GG  A+   V IA    +A  S + KD+     
Sbjct: 122 CVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFVRIAKGCMIAGKSALGKDVPPYCT 181

Query: 219 YGGFPAVPIHEWRRQVANQIRSSK 242
             G  A      R ++   + S  
Sbjct: 182 VEGNRAFIRGLNRHRMRQLLESKD 205

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} Length = 259

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 3/89 (3%)

Query: 143 IGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVR 202
           I   + I    +I   V IG+ C++   V +     + + VTL G   V  +  I     
Sbjct: 3   IAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAV 62

Query: 203 LAANSCVFKDITEPGDYGGFPAVPIHEWR 231
           L       +D+   G+Y        +  R
Sbjct: 63  LGTQP---QDLKYKGEYSELIIGEDNLIR 88

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} Length = 259

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 22/148 (14%), Positives = 37/148 (25%), Gaps = 30/148 (20%)

Query: 83  IGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTV 142
           I  + II                             A I   VEIG    I  G      
Sbjct: 3   IAKTAIISP--------------------------KAEINKGVEIGEFCVIGDG----VK 32

Query: 143 IGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVR 202
           + +  K+ N V +  +  +GK+  +     +        Y      + + +   I     
Sbjct: 33  LDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGEDNLIREFCM 92

Query: 203 LAANSCVFKDITEPGDYGGFPAVPIHEW 230
           +   +      T  GD     A      
Sbjct: 93  INPGTEGGIKKTLIGDKNLLMAYVHVAH 120

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} Length = 259

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 19/154 (12%), Positives = 37/154 (24%), Gaps = 24/154 (15%)

Query: 80  NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWR 139
             II     I+ GV IG+                       IG+ V++     +      
Sbjct: 6   TAIISPKAEINKGVEIGE--------------------FCVIGDGVKLDEGVKL----HN 41

Query: 140 DTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIAS 199
           +  +  H+ +    +I     +G         G      IG+   +     +        
Sbjct: 42  NVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGEDNLIREFCMINPGTEGGI 101

Query: 200 KVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQ 233
           K  L  +  +              +  I      
Sbjct: 102 KKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVT 135

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 201

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 73.9 bits (180), Expect = 1e-16
 Identities = 40/193 (20%), Positives = 65/193 (33%), Gaps = 5/193 (2%)

Query: 42  VHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFG 101
           +      G +V I +  ++   VT+G    IG    + N +IGD C I     +      
Sbjct: 11  LRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLA 70

Query: 102 FFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAI 161
                      +P    A +     +G    + +          H       +IG NV I
Sbjct: 71  AACTIGPFARLRPG---AELLEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNVNI 127

Query: 162 GKSCMLCGQVGIA-GSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDY- 219
           G   + C   G       IGD V +G    +   V++     +AA + V +++ E     
Sbjct: 128 GAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRNVGENALAI 187

Query: 220 GGFPAVPIHEWRR 232
              P      WRR
Sbjct: 188 SRVPQTQKEGWRR 200

>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} Length = 203

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Enterococcus faecium, VAT(D) [TaxId: 1352]

 Score = 68.3 bits (166), Expect = 1e-14
 Identities = 35/156 (22%), Positives = 52/156 (33%), Gaps = 2/156 (1%)

Query: 79  SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSW 138
           S   I         V +G+  + +         K+       + + ++IG    I  G  
Sbjct: 16  SVQFIKPILEKLENVEVGEYSY-YDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGVT 74

Query: 139 RDTVIGDHSKIDNLVQIG-HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI 197
                 +H    +            K      Q+ I G   IG+ V +G  V +   V I
Sbjct: 75  IIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKI 134

Query: 198 ASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQ 233
                +AANS V KDI      GG PA  I +   Q
Sbjct: 135 GDGAIVAANSVVVKDIAPYMLAGGNPANEIKQRFDQ 170

>d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]} Length = 208

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 64.7 bits (157), Expect = 2e-13
 Identities = 22/153 (14%), Positives = 44/153 (28%), Gaps = 12/153 (7%)

Query: 80  NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWR 139
           N  +G                G++     +   +  + +    + + IG+   I  G+  
Sbjct: 20  NIRVGRYSYYS----------GYYHGHSFDDCARYLMPDRDDVDKLVIGSFCSIGSGAAF 69

Query: 140 DTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVG--IAGSATIGDYVTLGGRVAVRDHVSI 197
                   + +       +    +        G   AG   IG  V +G        V +
Sbjct: 70  IMAGNQGHRAEWASTFPFHFMHEEPAFAGAVNGYQPAGDTLIGHEVWIGTEAMFMPGVRV 129

Query: 198 ASKVRLAANSCVFKDITEPGDYGGFPAVPIHEW 230
                + + + V  D+      GG PA  I + 
Sbjct: 130 GHGAIIGSRALVTGDVEPYAIVGGNPARTIRKR 162

>d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]} Length = 208

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 38.2 bits (88), Expect = 3e-04
 Identities = 18/138 (13%), Positives = 36/138 (26%), Gaps = 1/138 (0%)

Query: 46  AVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVD 105
            V   N+ +G  +            +      + +    D  +I +   IG         
Sbjct: 15  QVSNPNIRVGRYSYYSGYYHGHSFDDCA-RYLMPDRDDVDKLVIGSFCSIGSGAAFIMAG 73

Query: 106 EHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSC 165
             G+  +          +     A +        DT+IG    I         V +G   
Sbjct: 74  NQGHRAEWASTFPFHFMHEEPAFAGAVNGYQPAGDTLIGHEVWIGTEAMFMPGVRVGHGA 133

Query: 166 MLCGQVGIAGSATIGDYV 183
           ++  +  + G       V
Sbjct: 134 IIGSRALVTGDVEPYAIV 151

>d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]} Length = 182

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Maltose O-acetyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 60.9 bits (147), Expect = 3e-12
 Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 2/112 (1%)

Query: 118 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSA 177
           N  +GN+     +  +         IGD+  +   V I                 +    
Sbjct: 72  NIFLGNNFFANFDCVMLDVC--PIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPV 129

Query: 178 TIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHE 229
           TIG+ V +GGR  +   V+I   V +A+ + V KD+ +    GG PA  I +
Sbjct: 130 TIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKDVPDNVVVGGNPARIIKK 181

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 196

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 55.1 bits (131), Expect = 6e-10
 Identities = 36/185 (19%), Positives = 56/185 (30%), Gaps = 3/185 (1%)

Query: 48  LGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEH 107
           +  +V I S   +   VT+   T IG    L+N        I  G  I            
Sbjct: 11  IDIDVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVVDSTIGAGAVITNSMIEESSVAD 70

Query: 108 GN--MLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSC 165
           G           N+ +G  V IG    +   S  +     H       ++G NV  G   
Sbjct: 71  GVIVGPYAHIRPNSSLGAQVHIGNFVEVKGSSIGENTKAGHLTYIGNCEVGSNVNFGAGT 130

Query: 166 MLCGQVGI-AGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPA 224
           +     G       IG+ V +G    +   V +     + A S + KD+       G   
Sbjct: 131 ITVNYDGKNKYKTVIGNNVFVGSNSTIIAPVELGDNSLVGAGSTITKDVPADAIAIGRGR 190

Query: 225 VPIHE 229
               +
Sbjct: 191 QINKD 195

>d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]} Length = 200

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Galactoside acetyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 52.9 bits (126), Expect = 3e-09
 Identities = 28/141 (19%), Positives = 42/141 (29%), Gaps = 14/141 (9%)

Query: 89  IHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSK 148
           +     +       +     N+          IG +     N  I         IGD+  
Sbjct: 57  VGENAWVEP---PVYFSYGSNI---------HIGRNFYANFNLTIVDDYTV--TIGDNVL 102

Query: 149 IDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSC 208
           I   V +          +       +   TIG+ V +G  V +   V+I     + A S 
Sbjct: 103 IAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSI 162

Query: 209 VFKDITEPGDYGGFPAVPIHE 229
           V KDI       G P   I E
Sbjct: 163 VTKDIPPNVVAAGVPCRVIRE 183

>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]} Length = 241

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Serine acetyltransferase
domain: Serine acetyltransferase
species: Haemophilus influenzae [TaxId: 727]

 Score = 50.9 bits (121), Expect = 2e-08
 Identities = 20/153 (13%), Positives = 49/153 (32%)

Query: 75  NVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCID 134
           + A+         +             +  +++   L         +   V+I   + I 
Sbjct: 88  DPAVELWSTPLLYLKGFHAIQSYRITHYLWNQNRKSLALYLQNQISVAFDVDIHPAAKIG 147

Query: 135 RGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDH 194
            G   D   G      ++++   ++  G +    G+        + + V +G    +  +
Sbjct: 148 HGIMFDHATGIVVGETSVIENDVSILQGVTLGGTGKESGDRHPKVREGVMIGAGAKILGN 207

Query: 195 VSIASKVRLAANSCVFKDITEPGDYGGFPAVPI 227
           + +    ++ ANS V   + E     G PA  +
Sbjct: 208 IEVGKYAKIGANSVVLNPVPEYATAAGVPARIV 240

>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 173

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Ferripyochelin binding protein
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 44.2 bits (103), Expect = 2e-06
 Identities = 16/131 (12%), Positives = 39/131 (29%), Gaps = 1/131 (0%)

Query: 61  GPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNA 119
           G    I  S  +  N  +  + ++ +   +     +  D    +V ++ N+     +  +
Sbjct: 8   GKKPRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTS 67

Query: 120 RIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATI 179
                      +           +G++  I     I     IG   ++     +  +  I
Sbjct: 68  HGYPTEIGEYVTIGHNAMVHGAKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNKEI 127

Query: 180 GDYVTLGGRVA 190
            DY  + G   
Sbjct: 128 PDYSLVLGVPG 138

>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 173

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Ferripyochelin binding protein
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 19/170 (11%), Positives = 47/170 (27%), Gaps = 26/170 (15%)

Query: 80  NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCI---DRG 136
              I  S  +     +                      +  +     +  ++ +      
Sbjct: 10  KPRIHPSAFVDENAVVIG--------------------DVVLEEKTSVWPSAVLRGDIEQ 49

Query: 137 SWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVS 196
            +          +      G+   IG+   +     +   A +G+YV +G    + D   
Sbjct: 50  IYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNA-MVHGAKVGNYVIIGISSVILDGAK 108

Query: 197 IASKVRLAANSCV--FKDITEPGDYGGFPAVPIHEWRRQVANQIRSSKKR 244
           I   V + A + V   K+I +     G P   + +   +     + + + 
Sbjct: 109 IGDHVIIGAGAVVPPNKEIPDYSLVLGVPGKVVRQLTEEEIEWTKKNAEI 158

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 78

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 40.6 bits (95), Expect = 1e-05
 Identities = 14/54 (25%), Positives = 23/54 (42%)

Query: 42 VHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCI 95
          +      G +V I +  ++   VT+G    IG    + N +IGD C I     +
Sbjct: 11 LRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVV 64

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 78

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 37.5 bits (87), Expect = 1e-04
 Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 5/65 (7%)

Query: 30 IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPA-----VTIGQSTNIGFNVALSNCIIG 84
          +  T+       + +  ++  NV +G    +G         IG    I     + +  + 
Sbjct: 11 LRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLA 70

Query: 85 DSCII 89
           +C I
Sbjct: 71 AACTI 75

>d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]} Length = 274

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
species: Mycobacterium bovis [TaxId: 1765]

 Score = 41.8 bits (98), Expect = 3e-05
 Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 9/85 (10%)

Query: 27  SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPA--------VTIGQSTNIGFN-VA 77
            A +D   +++  A V S A +G NV +  G  +G            I  +  IG     
Sbjct: 131 GAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEV 190

Query: 78  LSNCIIGDSCIIHNGVCIGQDGFGF 102
           +   I+ +  +I  GV +GQ    +
Sbjct: 191 VEGVIVEEGSVISMGVYLGQSTRIY 215

>d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]} Length = 274

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
species: Mycobacterium bovis [TaxId: 1765]

 Score = 40.7 bits (95), Expect = 7e-05
 Identities = 21/154 (13%), Positives = 41/154 (26%), Gaps = 21/154 (13%)

Query: 81  CIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSW-- 138
                            DG      +   M                +   + + +G++  
Sbjct: 59  LKKAVLLSFRINDNKVMDGAETRYYDKVPMKFADYDEARFQKEGFRVVPPATVRQGAFIA 118

Query: 139 -----------RDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGS--------ATI 179
                          + + + +D    +G    IGK+  L G VGI G           I
Sbjct: 119 RNTVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTII 178

Query: 180 GDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDI 213
            D   +G R  V + V +     ++    + +  
Sbjct: 179 EDNCFIGARSEVVEGVIVEEGSVISMGVYLGQST 212

>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 135

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

 Score = 40.5 bits (94), Expect = 3e-05
 Identities = 21/128 (16%), Positives = 42/128 (32%), Gaps = 8/128 (6%)

Query: 75  NVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLL--NARIGNHVEIGANSC 132
           +  +++ +IG+ C+I N                G +++   L+  +    +       + 
Sbjct: 9   DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAK 68

Query: 133 IDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLG-GRVAV 191
                     IG +  I     I  N  IG +  +  +  +  +A   D   +  G V V
Sbjct: 69  G----SVPIGIGKNCHIKR-AIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTV 123

Query: 192 RDHVSIAS 199
                I S
Sbjct: 124 IKDALIPS 131

>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 135

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

 Score = 39.7 bits (92), Expect = 6e-05
 Identities = 17/108 (15%), Positives = 30/108 (27%), Gaps = 1/108 (0%)

Query: 26  QSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGD 85
             + +     I  GAI+    ++GA+           A        IG N  +   II  
Sbjct: 29  HHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDK 88

Query: 86  SCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCI 133
           +  I + V I             +     +     +     I +   I
Sbjct: 89  NARIGDNVKIINKDNVQEAARETDG-YFIKSGIVTVIKDALIPSGIII 135

>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} Length = 210

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: gamma-carbonic anhydrase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 25/150 (16%), Positives = 45/150 (30%), Gaps = 6/150 (4%)

Query: 43  HSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQD--GF 100
            S  V+     I     V   VTIG +  +    ++ +       +              
Sbjct: 20  PSAPVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHA 79

Query: 101 GFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVA 160
              ++E G  ++   +        V IG N  +   S         + + +   IG    
Sbjct: 80  LETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVH----GPAAVGDDTFIGMQAF 135

Query: 161 IGKSCMLCGQVGIAGSATIGDYVTLGGRVA 190
           + KS +    V    SA IG  +  G  + 
Sbjct: 136 VFKSKVGNNCVLEPRSAAIGVTIPDGRYIP 165

>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} Length = 210

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: gamma-carbonic anhydrase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

 Score = 38.1 bits (87), Expect = 4e-04
 Identities = 29/151 (19%), Positives = 53/151 (35%), Gaps = 10/151 (6%)

Query: 30  IDSTVLIEVGAIVHSKAVLGANVCIGSGTVV----GPAVTIGQSTNI-GFNVALSNCIIG 84
           ID T  I+  A V  +  +GANV +     +    G  + +G  +N+    V  +   I 
Sbjct: 25  IDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETIN 84

Query: 85  DSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQL---LNARIGNHVEIGANSCIDRGSW-RD 140
           +         +  DG  + V    N+    Q      A +G+   IG  + + +     +
Sbjct: 85  EEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFKSKVGNN 144

Query: 141 TVIGDHSKIDNLVQIGHNVAIGKSCMLCGQV 171
            V+   S    +  I     I    ++  Q 
Sbjct: 145 CVLEPRSAAIGVT-IPDGRYIPAGMVVTSQA 174

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]} Length = 193

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

 Score = 36.4 bits (83), Expect = 0.001
 Identities = 22/100 (22%), Positives = 35/100 (35%)

Query: 128 GANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGG 187
           G              I     ++    I H   IG+   +      AG+  IG    LG 
Sbjct: 94  GILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGI 153

Query: 188 RVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI 227
              V  ++S+A    L   + + K+  E G + G PA  +
Sbjct: 154 NSCVLPNLSLADDSILGGGATLVKNQDEKGVFVGVPAKRM 193

>d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]} Length = 172

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Putative acetyltransferase/acyltransferase BC4754
species: Bacillus cereus [TaxId: 1396]

 Score = 34.9 bits (79), Expect = 0.004
 Identities = 20/145 (13%), Positives = 37/145 (25%), Gaps = 11/145 (7%)

Query: 46  AVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVD 105
                   I S   +   VTI             +  +G+   I     I  D     + 
Sbjct: 7   PYKEKKPKIASSAFIADYVTIT-----------GDVYVGEESSIWFNTVIRGDVSPTIIG 55

Query: 106 EHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSC 165
           +  N+  +  L  +     +     +   +       I   + I     I     IG+  
Sbjct: 56  DRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHSCHIKKDALIGMGSIILDGAEIGEGA 115

Query: 166 MLCGQVGIAGSATIGDYVTLGGRVA 190
            +     ++    I       GR A
Sbjct: 116 FIGAGSLVSQGKKIPPNTLAFGRPA 140

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	246
d2jf2a1	262	UDP N-acetylglucosamine acyltransferase {Escherich	100.0
d1j2za_	259	UDP N-acetylglucosamine acyltransferase {Helicobac	100.0
d1g97a1	196	N-acetylglucosamine 1-phosphate uridyltransferase	99.96
d2oi6a1	201	N-acetylglucosamine 1-phosphate uridyltransferase	99.93
d2jf2a1	262	UDP N-acetylglucosamine acyltransferase {Escherich	99.91
d1j2za_	259	UDP N-acetylglucosamine acyltransferase {Helicobac	99.9
d1krra_	200	Galactoside acetyltransferase {Escherichia coli [T	99.89
d1mr7a_	203	Xenobiotic acetyltransferase {Enterococcus faecium	99.87
d1xhda_	172	Putative acetyltransferase/acyltransferase BC4754	99.86
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	99.86
d1ocxa_	182	Maltose O-acetyltransferase {Escherichia coli [Tax	99.85
d1v3wa_	173	Ferripyochelin binding protein {Archaeon Pyrococcu	99.81
d1g97a1	196	N-acetylglucosamine 1-phosphate uridyltransferase	99.79
d2f9ca1	320	Hypothetical protein YdcK {Salmonella enterica [Ta	99.79
d1qrea_	210	gamma-carbonic anhydrase {Archaeon Methanosarcina	99.78
d1xata_	208	Xenobiotic acetyltransferase {Pseudomonas aerugino	99.78
d1qrea_	210	gamma-carbonic anhydrase {Archaeon Methanosarcina	99.76
d1xhda_	172	Putative acetyltransferase/acyltransferase BC4754	99.74
d2oi6a1	201	N-acetylglucosamine 1-phosphate uridyltransferase	99.71
d1ssqa_	241	Serine acetyltransferase {Haemophilus influenzae [	99.69
d1v3wa_	173	Ferripyochelin binding protein {Archaeon Pyrococcu	99.65
d1krra_	200	Galactoside acetyltransferase {Escherichia coli [T	99.63
d2f9ca1	320	Hypothetical protein YdcK {Salmonella enterica [Ta	99.6
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	99.57
d3tdta_	274	Tetrahydrodipicolinate-N-succinlytransferase, THDP	99.56
d3tdta_	274	Tetrahydrodipicolinate-N-succinlytransferase, THDP	99.52
d1yp2a1	135	Glucose-1-phosphate adenylyltransferase small subu	99.5
d1mr7a_	203	Xenobiotic acetyltransferase {Enterococcus faecium	99.49
d1fxja1	78	N-acetylglucosamine 1-phosphate uridyltransferase	99.49
d1yp2a1	135	Glucose-1-phosphate adenylyltransferase small subu	99.44
d1ocxa_	182	Maltose O-acetyltransferase {Escherichia coli [Tax	99.43
d1fxja1	78	N-acetylglucosamine 1-phosphate uridyltransferase	99.41
d1xata_	208	Xenobiotic acetyltransferase {Pseudomonas aerugino	99.16
d1ssqa_	241	Serine acetyltransferase {Haemophilus influenzae [	99.0

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

Probab=100.00  E-value=4.3e-35  Score=239.95  Aligned_cols=189  Identities=28%  Similarity=0.401  Sum_probs=160.6

Q ss_pred             ECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEE-eccEECCCcEECCCeEECCCCceeEEcCCC
Q 025890           30 IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHG  108 (246)
Q Consensus        30 i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~  108 (246)
                      |++++.|+++|+|++++.|++++.|+++|+|++++.||++|.|+++++| .++.+++++.+.+++.++..++.+..    
T Consensus         2 i~~~~~I~p~a~I~~~~~Ig~~v~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~ig~~~~i~~~~~~~~~~~~~~~----   77 (262)
T d2jf2a1           2 IDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKY----   77 (262)
T ss_dssp             BCTTCEECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCCCTTC----
T ss_pred             cCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEeCCEEEcCCccccccceeeeecccceeeccccc----
Confidence            4556666666777777777777777888888888888888888888887 56888888888888888765432211    


Q ss_pred             ceeecCcccceEECCCcEECcccEEcCCCcc---CeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEE
Q 025890          109 NMLKKPQLLNARIGNHVEIGANSCIDRGSWR---DTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTL  185 (246)
Q Consensus       109 ~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~---~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~I  185 (246)
                          ........||+++.|++++++.++...   .+.||+++.++.++.|++++.||+++++++++.+.++++||++|+|
T Consensus        78 ----~~~~~~v~IG~~v~ig~~~~i~~~~~~~~~~T~IG~~~~i~~~~~I~h~~~IG~~~~i~~~~~i~g~~~Ig~~v~i  153 (262)
T d2jf2a1          78 ----AGEPTRVEIGDRNRIRESVTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAII  153 (262)
T ss_dssp             ----CSCCCEEEECSSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEE
T ss_pred             ----cccCceEEECCeeeecceEeccCccccCccceEECCCCEEecccccccccccCCCeeecCccccccceeeCceEEe
Confidence                112236899999999999999988653   4899999999999999999999999999999999999999999999


Q ss_pred             CcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchh
Q 025890          186 GGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVP  226 (246)
Q Consensus       186 g~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~  226 (246)
                      |+++.+.++++||++++|+++|+|+||+||++++.|+||+.
T Consensus       154 g~~~~i~~~v~IG~~a~igagS~Vtkdvp~~~~~~G~PA~~  194 (262)
T d2jf2a1         154 GGMTAVHQFCIIGAHVMVGGCSGVAQDVPPYVIAQGNHATP  194 (262)
T ss_dssp             CTTCEECTTCEECTTCEECSSCEECSBBCTTEEEEEBTEEE
T ss_pred             ccCceeccccEeehhceeeccceEeecCCcccccCCCCcee
Confidence            99999999999999999999999999999999999999985

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

Probab=100.00  E-value=1.6e-33  Score=230.47  Aligned_cols=183  Identities=29%  Similarity=0.415  Sum_probs=143.4

Q ss_pred             EcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEE-eccEECCCcEECCCeEECCCCceeEEcCCCceeecC
Q 025890           36 IEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKP  114 (246)
Q Consensus        36 I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~  114 (246)
                      |.+.|.|++.|.|+++++||++|+|++++.|+++|+|++++.| .++.||++|.|++++.|+.+++....        ..
T Consensus         3 Ih~sAiI~~~a~Ig~~V~IG~~~vIg~~v~Ig~~~~I~~~v~I~~~t~IG~~~~i~~~~~Ig~~~~~~~~--------~~   74 (259)
T d1j2za_           3 IAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKY--------KG   74 (259)
T ss_dssp             BCTTCEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSC--------CS
T ss_pred             CCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCEEEeCCCEEeeecccCCccEECCCCccccc--------cc
Confidence            4444444444444455555555555555555555555555555 45666777777777777765432211        11


Q ss_pred             cccceEECCCcEECcccEEcCCCc---cCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEE
Q 025890          115 QLLNARIGNHVEIGANSCIDRGSW---RDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAV  191 (246)
Q Consensus       115 ~~~~~~Ig~~~~ig~~~~i~~~~~---~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v  191 (246)
                      ......+|+++.+++++.+.....   ..+.+|+++.++.++.+++++.+|+++.+..++.+.++++||++||||.++.|
T Consensus        75 ~~~~~~ig~~~~i~~~~~i~~~~~~~~~~t~iG~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~g~v~Ig~~v~IG~~s~I  154 (259)
T d1j2za_          75 EYSELIIGEDNLIREFCMINPGTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAI  154 (259)
T ss_dssp             CCCEEEECSSCEECTTCEECCCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEE
T ss_pred             ccceEEeccccccccccccccccccccccccccCceEEeccccccceecccceeeeeccccccccccccccceecceeee
Confidence            123788999999999999987654   46899999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEECCCCEEccCcEEeccCCCCCeEEccCchh
Q 025890          192 RDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVP  226 (246)
Q Consensus       192 ~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~  226 (246)
                      .++++||++|+|+++|+|++|+||++++.|+||+.
T Consensus       155 ~~gv~IG~~a~IgagSvV~kdVp~~~i~~G~PA~~  189 (259)
T d1j2za_         155 HQFVRIAKGCMIAGKSALGKDVPPYCTVEGNRAFI  189 (259)
T ss_dssp             CTTCEECTTCEECTTCEECSBBCTTEEEETTBTEE
T ss_pred             ecccEeccceeeeeeeeeccccccceeEEeccccc
Confidence            99999999999999999999999999999999985

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.96  E-value=4.4e-29  Score=195.39  Aligned_cols=180  Identities=21%  Similarity=0.281  Sum_probs=133.3

Q ss_pred             eecc-CcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEe-----ccEECCCcEECCCeEEC
Q 025890           23 IFHQ-SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-----NCIIGDSCIIHNGVCIG   96 (246)
Q Consensus        23 ~i~~-~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~-----~~~Ig~~~~I~~~~~i~   96 (246)
                      .+|| .++|++++.|+++++|++++.|+++++||++|.|++++.|. ++.|++++.|.     ...+++++.|++++.++
T Consensus         3 ~i~P~s~~I~~~v~Ig~~~~I~~~vvI~~~v~IG~~~~I~~~~~i~-~~~IG~~~~I~~~~i~~~~~g~~~~Ig~~~~i~   81 (196)
T d1g97a1           3 FVNPEATYIDIDVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVV-DSTIGAGAVITNSMIEESSVADGVIVGPYAHIR   81 (196)
T ss_dssp             ESCGGGCEECTTCEECTTCEECTTCEEESSCEECTTCEECTTCEEE-SCEECTTCEECSCEEESCEECTTCEECSSCEEC
T ss_pred             EeCCCeEEECCCcEECCCCEECCCCEECCCcEECCCceEcCceEee-eeecccCccccccceeeccccCcceeecceecc
Confidence            3565 34688888888888888888888888888888888887774 47777777763     45567777777777776


Q ss_pred             CCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEE-----ccCcEECCCcEEcc-c
Q 025890           97 QDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQI-----GHNVAIGKSCMLCG-Q  170 (246)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i-----~~~~~Ig~~~~i~~-~  170 (246)
                      .                    .+.+++++.++..+.+..     ..+++.+.++.++.+     ..+..++.++.... .
T Consensus        82 ~--------------------~~~i~~~~~i~~~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~  136 (196)
T d1g97a1          82 P--------------------NSSLGAQVHIGNFVEVKG-----SSIGENTKAGHLTYIGNCEVGSNVNFGAGTITVNYD  136 (196)
T ss_dssp             S--------------------SCEECTTCEEEEEEEEES-----CEECTTCEEEEEEEEESEEECSSCEECTTCEEECBS
T ss_pred             c--------------------ccccccceeeccccccee-----eecCcceEecceEEecceeecceeecCCCeEEeecc
Confidence            4                    667777777777666654     455666655555554     23333333333322 2


Q ss_pred             eeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhhH
Q 025890          171 VGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIH  228 (246)
Q Consensus       171 ~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~  228 (246)
                      .....++.||++||||.++.+.++++||++++|+++|+|+||+||++++.|+|||.++
T Consensus       137 ~~~~~~~~Ig~~~~iG~~~~I~~gv~IG~~s~IgagsvVtkdvp~~~i~~G~Pak~~k  194 (196)
T d1g97a1         137 GKNKYKTVIGNNVFVGSNSTIIAPVELGDNSLVGAGSTITKDVPADAIAIGRGRQINK  194 (196)
T ss_dssp             SSCBCCEEECTTCEECTTCEEESSCEECTTCEECTTCEECSCBCTTCEECCCCCCCCC
T ss_pred             eeeeeeeEEecCCEEeeeeEEcCCcEECCCCEECCCCEECcCcCCCCEEEecCCEEec
Confidence            2345679999999999999999999999999999999999999999999999998765

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=2e-25  Score=175.23  Aligned_cols=183  Identities=20%  Similarity=0.289  Sum_probs=136.7

Q ss_pred             eeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCcee
Q 025890           23 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGF  102 (246)
Q Consensus        23 ~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~  102 (246)
                      .++.++.|++++.|++++.|++++.|+++++|+++|+|. ...++.++.+...+...++.+++++.++.++.+..     
T Consensus        10 ~i~~~v~IG~~v~Ig~~vvI~~~v~IG~~~~I~~~~~I~-~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~-----   83 (201)
T d2oi6a1          10 DLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIK-NSVIGDDCEISPYTVVEDANLAAACTIGPFARLRP-----   83 (201)
T ss_dssp             EEEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEE-SCEECTTCEECSSCEEESCEECTTCEECSSEEECT-----
T ss_pred             EECceEEECCCCEECCCCEECCceEECCCcEECCCEEEe-eeccCCceeeeeeecccccccccccccCccccccc-----
Confidence            456666777777777777777777777777777777775 33445667777777778888888888888888864     


Q ss_pred             EEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEcccee-------Eec
Q 025890          103 FVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVG-------IAG  175 (246)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~-------~~~  175 (246)
                                     ...+++.+.++..+.+.     .+.+++++.++.++.+ .++.+++++.+..++.       ...
T Consensus        84 ---------------~~~~~~~~~i~~~~~~~-----~~~ig~~~~i~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~  142 (201)
T d2oi6a1          84 ---------------GAELLEGAHVGNFVEMK-----KARLGKGSKAGHLTYL-GDAEIGDNVNIGAGTITCNYDGANKF  142 (201)
T ss_dssp             ---------------TCEECTTCEEEEEEEEE-----EEEECTTCEEEEEEEE-EEEEECTTCEECTTCEEECBSSSCBC
T ss_pred             ---------------ceeeeeeeeecceeeee-----eeeeCCCeEEceeeee-cccCcCccccccCceeEeeccccccc
Confidence                           56667777776666554     3567777777665544 3455555555554442       334


Q ss_pred             ceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEE-ccCchhhHHHHH
Q 025890          176 SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYG-GFPAVPIHEWRR  232 (246)
Q Consensus       176 ~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~-g~p~~~~~~~~~  232 (246)
                      ++.|+++||||.++.+.++++||++|+|+++|+|+||+||++++. |.|++.++.|+|
T Consensus       143 ~~~Ig~~v~iG~~~~I~~~v~IG~~s~IgagsvV~kdVp~~si~vg~~~~~~~~~~~r  200 (201)
T d2oi6a1         143 KTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRNVGENALAISRVPQTQKEGWRR  200 (201)
T ss_dssp             CEEECTTCEECTTCEEESSEEECTTCEECTTCEECSCBCTTCEECCCCCCCCCTTCCC
T ss_pred             ccEeCCcEEEeEeeeEcCCcEECCCCEECCCCEEeeecCCCCEEEecccceEccCcCC
Confidence            689999999999999999999999999999999999999999855 599999988764

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

Probab=99.91  E-value=2.1e-23  Score=170.00  Aligned_cols=202  Identities=22%  Similarity=0.280  Sum_probs=149.2

Q ss_pred             CCceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEe-------------------c
Q 025890           20 GGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-------------------N   80 (246)
Q Consensus        20 ~~~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~-------------------~   80 (246)
                      ..+.++++|+|++++.|++++.|+++|+|+++++||++|+|+++++|+.++.+++++.+.                   .
T Consensus         4 ~~~~I~p~a~I~~~~~Ig~~v~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~   83 (262)
T d2jf2a1           4 KSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTR   83 (262)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCCCTTCCSCCCE
T ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEeCCEEEcCCccccccceeeeecccceeeccccccccCce
Confidence            456778888888888888888888888888888888888887777777777777666651                   2


Q ss_pred             cEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcE
Q 025890           81 CIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVA  160 (246)
Q Consensus        81 ~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~  160 (246)
                      +.||+++.|++++.+....+.             ....+.||+++.+..++.|.    +++.||+++.+..++.+...++
T Consensus        84 v~IG~~v~ig~~~~i~~~~~~-------------~~~~T~IG~~~~i~~~~~I~----h~~~IG~~~~i~~~~~i~g~~~  146 (262)
T d2jf2a1          84 VEIGDRNRIRESVTIHRGTVQ-------------GGGLTKVGSDNLLMINAHIA----HDCTVGNRCILANNATLAGHVS  146 (262)
T ss_dssp             EEECSSCEECTTCEEECCCTT-------------TTSEEEECSSCEECTTCEEC----TTCEECSSCEECTTCEECTTCE
T ss_pred             EEECCeeeecceEeccCcccc-------------CccceEECCCCEEecccccc----cccccCCCeeecCcccccccee
Confidence            578888888888888643211             00148999999999999998    5699999999999999999999


Q ss_pred             ECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEc-cCcEEeccCCCCCeEEccCchhhHHHHHHhhhhhh
Q 025890          161 IGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLA-ANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIR  239 (246)
Q Consensus       161 Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~-~~s~v~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~  239 (246)
                      ||++++++.++.+.++++||++++|++++.|.++  +++++++. ..+...+-.-.+-...+...+.++.++++++.+.+
T Consensus       147 Ig~~v~ig~~~~i~~~v~IG~~a~igagS~Vtkd--vp~~~~~~G~PA~~~~~n~~gl~R~g~~~e~i~~lk~~~k~L~~  224 (262)
T d2jf2a1         147 VDDFAIIGGMTAVHQFCIIGAHVMVGGCSGVAQD--VPPYVIAQGNHATPFGVNIEGLKRRGFSREAITAIRNAYKLIYR  224 (262)
T ss_dssp             ECTTCEECTTCEECTTCEECTTCEECSSCEECSB--BCTTEEEEEBTEEEEEECHHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred             eCceEEeccCceeccccEeehhceeeccceEeec--CCcccccCCCCceeeeeeccchhhcCCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999998  45666553 33433211100001113344555556666665554


Q ss_pred             c
Q 025890          240 S  240 (246)
Q Consensus       240 ~  240 (246)
                      .
T Consensus       225 ~  225 (262)
T d2jf2a1         225 S  225 (262)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

Probab=99.90  E-value=1.3e-22  Score=165.13  Aligned_cols=164  Identities=22%  Similarity=0.304  Sum_probs=116.1

Q ss_pred             eccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEE-ec------------------cEEC
Q 025890           24 FHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SN------------------CIIG   84 (246)
Q Consensus        24 i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I-~~------------------~~Ig   84 (246)
                      +|++|.|++.|.|++++.|+++|+|++++.|+++|+|++++.|+.++.|++++.+ ..                  ..++
T Consensus         3 Ih~sAiI~~~a~Ig~~V~IG~~~vIg~~v~Ig~~~~I~~~v~I~~~t~IG~~~~i~~~~~Ig~~~~~~~~~~~~~~~~ig   82 (259)
T d1j2za_           3 IAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIG   82 (259)
T ss_dssp             BCTTCEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEEC
T ss_pred             CCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCEEEeCCCEEeeecccCCccEECCCCcccccccccceEEec
Confidence            4555555555555555555555555555555555555555555444444444444 22                  3345


Q ss_pred             CCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCC
Q 025890           85 DSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKS  164 (246)
Q Consensus        85 ~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~  164 (246)
                      +++.+++++.+....             ......+.||+++.+..++.+.    +++.+++++.+..++.+..+++||++
T Consensus        83 ~~~~i~~~~~i~~~~-------------~~~~~~t~iG~~~~i~~~~~i~----~~~~ig~~~~i~~~~~i~g~v~Ig~~  145 (259)
T d1j2za_          83 EDNLIREFCMINPGT-------------EGGIKKTLIGDKNLLMAYVHVA----HDCVIGSHCILANGVTLAGHIEIGDY  145 (259)
T ss_dssp             SSCEECTTCEECCCC-------------TTTTSEEEECSSCEECTTCEEC----TTCEECSSCEECTTCEECTTCEECSS
T ss_pred             ccccccccccccccc-------------ccccccccccCceEEecccccc----ceecccceeeeecccccccccccccc
Confidence            555555555544211             1112378999999999999998    56999999999999999999999999


Q ss_pred             cEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccC
Q 025890          165 CMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN  206 (246)
Q Consensus       165 ~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~  206 (246)
                      |+++.++.+.++++||++|+||++++|.++  |++++++...
T Consensus       146 v~IG~~s~I~~gv~IG~~a~IgagSvV~kd--Vp~~~i~~G~  185 (259)
T d1j2za_         146 VNIGGLTAIHQFVRIAKGCMIAGKSALGKD--VPPYCTVEGN  185 (259)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECSB--BCTTEEEETT
T ss_pred             ceecceeeeecccEeccceeeeeeeeeccc--cccceeEEec
Confidence            999999999999999999999999999998  4677766543

>d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Galactoside acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=3e-23  Score=162.04  Aligned_cols=115  Identities=23%  Similarity=0.189  Sum_probs=83.0

Q ss_pred             EECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECC
Q 025890          120 RIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIAS  199 (246)
Q Consensus       120 ~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~  199 (246)
                      .||+++.|+++|+|...  ..+.||++|.+++++.+.......+............+++||++||||.+++|.++++||+
T Consensus        76 ~IG~~~~I~~~~~I~~~--~~i~IG~~v~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~Igd~v~IG~~~~I~~Gv~IG~  153 (200)
T d1krra_          76 HIGRNFYANFNLTIVDD--YTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGD  153 (200)
T ss_dssp             EECSSCEECSCEEEECS--SCEEECSSCEECSSCEEESEECCSSTTTCTTCCBEECCEEECTTCEECTTCEECTTCEECT
T ss_pred             EECCccEECceEEEecC--CCcEeCCCccccceeEEecccccceecccccceeecceEEEccCcccceeeecccccccCC
Confidence            33334444444443322  2344555555555555544444455555555566677899999999999999999999999


Q ss_pred             CCEEccCcEEeccCCCCCeEEccCchhhHHHHHHhhh
Q 025890          200 KVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVAN  236 (246)
Q Consensus       200 ~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~~~~~~~~  236 (246)
                      +|+|+++|+|++|+|+++++.|+|||.++++.+..+.
T Consensus       154 ~~vIgagSvV~kdvp~~~iv~G~PArvik~~~~~~~~  190 (200)
T d1krra_         154 NSVIGAGSIVTKDIPPNVVAAGVPCRVIREINDRDKH  190 (200)
T ss_dssp             TCEECTTCEECSCBCTTEEEETTTTEEEEECCGGGTT
T ss_pred             CcEEeCCCEEeeEcCCCcEEEEeCCEEEEeCCHHHHh
Confidence            9999999999999999999999999999887655443

>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Enterococcus faecium, VAT(D) [TaxId: 1352]

Probab=99.87  E-value=4.4e-24  Score=167.71  Aligned_cols=70  Identities=34%  Similarity=0.330  Sum_probs=61.8

Q ss_pred             CCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhhHHHH
Q 025890          162 GKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWR  231 (246)
Q Consensus       162 g~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~~~  231 (246)
                      +.+.....+..+.++++||++||||.+++|+++++||++|+|+++|+|++|+|+++++.|+|||.++++.
T Consensus        99 ~~~~~~~~~~~i~g~v~IGd~v~IG~~~~I~~gv~IG~~~~IgagSvV~kdv~~~~i~~G~PAk~ik~r~  168 (203)
T d1mr7a_          99 EKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLAGGNPANEIKQRF  168 (203)
T ss_dssp             GGGCCCGGGSCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEEETTEEEEEESS
T ss_pred             cCcccccccccCccCeEECCEEEECCceeEEeEEEEcCCCEEecCeEEeeeCCCCEEEEEeCCEEEeccC
Confidence            3444455555667789999999999999999999999999999999999999999999999999998764

>d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Putative acetyltransferase/acyltransferase BC4754
species: Bacillus cereus [TaxId: 1396]

Probab=99.86  E-value=1.1e-21  Score=150.10  Aligned_cols=95  Identities=21%  Similarity=0.182  Sum_probs=69.9

Q ss_pred             ceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEE
Q 025890          118 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI  197 (246)
Q Consensus       118 ~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~i  197 (246)
                      .+.||+++.++.++.+......++.+                  ++++.+.....+ .++.|+++++|+.++++.+++.|
T Consensus        51 ~i~IG~~~~i~~~~~~~~~~~~~~~i------------------g~~~~~~~~~~~-~~~~i~~~~~ig~~~~i~~gv~I  111 (172)
T d1xhda_          51 PTIIGDRVNVQDQCTLHQSPQYPLIL------------------EDDVTVGHQVIL-HSCHIKKDALIGMGSIILDGAEI  111 (172)
T ss_dssp             EEEECTTCEECTTCEEECCTTCCEEE------------------CTTCEECTTCEE-ESCEECTTCEECTTCEECTTCEE
T ss_pred             cccccceeeeeeeceeccCCcCCeee------------------eeeeeeeeeecc-cccccccceEEecccEeeCCcEE
Confidence            45777777777777666543333333                  333333333333 24788999999999999999999


Q ss_pred             CCCCEEccCcEEe--ccCCCCCeEEccCchhhHHHH
Q 025890          198 ASKVRLAANSCVF--KDITEPGDYGGFPAVPIHEWR  231 (246)
Q Consensus       198 g~~~~v~~~s~v~--~~~~~~~~~~g~p~~~~~~~~  231 (246)
                      |++++|+++|+|+  +++|+++++.|+|||.++++.
T Consensus       112 G~~~~IgagsvV~~~~~i~~~~v~~G~Pak~i~~~~  147 (172)
T d1xhda_         112 GEGAFIGAGSLVSQGKKIPPNTLAFGRPAKVIRELT  147 (172)
T ss_dssp             CTTCEECTTCEECTTCEECTTEEEEETTEEEEEECC
T ss_pred             cCcccccceEEEeeCeEECCCeEEEecCcEEECCCC
Confidence            9999999999998  579999999999999877553

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=99.86  E-value=3.3e-21  Score=149.91  Aligned_cols=100  Identities=23%  Similarity=0.283  Sum_probs=90.6

Q ss_pred             CcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEE
Q 025890          124 HVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL  203 (246)
Q Consensus       124 ~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v  203 (246)
                      ++.|+++++|..    ++.||+++.+..++.+++++.|++++.+++++.+.++++||++||||.+++|.++++||++++|
T Consensus        94 g~~I~~~~~I~~----~~~Ig~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~g~v~Ig~~~~IG~~s~I~~~v~Ig~~~~I  169 (193)
T d3bswa1          94 GILIMPYVVINA----KAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDSIL  169 (193)
T ss_dssp             CCEECTTCEECT----TCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred             CceEeeeeeecC----CceeeeccccccccccceeeeccccccccccccccccceeeccccCCceeeEcCCeEECCCCEE
Confidence            455556666653    3678888999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCcEEeccCCCCCeEEccCchhh
Q 025890          204 AANSCVFKDITEPGDYGGFPAVPI  227 (246)
Q Consensus       204 ~~~s~v~~~~~~~~~~~g~p~~~~  227 (246)
                      +++|+|++|+|+++++.|+|||.+
T Consensus       170 gagsvV~~dv~~~~~~~G~PAk~i  193 (193)
T d3bswa1         170 GGGATLVKNQDEKGVFVGVPAKRM  193 (193)
T ss_dssp             CTTCEECSCBCSCCEECCCCCCCC
T ss_pred             CCCCEECcCCCCCcEEEEeCCEEC
Confidence            999999999999999999999864

>d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Maltose O-acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=1.5e-21  Score=150.06  Aligned_cols=110  Identities=25%  Similarity=0.270  Sum_probs=91.2

Q ss_pred             ceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEE
Q 025890          118 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI  197 (246)
Q Consensus       118 ~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~i  197 (246)
                      ++.||+++.|+++|+|...  ..+.||++|.+++++.|.+++.+++......++.+..+++||++||||.+++|.++++|
T Consensus        72 ni~IG~~~~I~~~~~I~d~--~~I~IG~~~~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~iG~~~~I~~Gv~I  149 (182)
T d1ocxa_          72 NIFLGNNFFANFDCVMLDV--CPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTI  149 (182)
T ss_dssp             TEEECSSEEECSSEEEECS--SCEEECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTTCEECTTCEECTTCEE
T ss_pred             ceeECCccEECCCcEEecC--CeEEECCCeEECcCceEeecccccceeeeeccceEcceeEECceEeeCceeeccCcEEE
Confidence            4555555555666655433  35677777777777777777777777777778888899999999999999999999999


Q ss_pred             CCCCEEccCcEEeccCCCCCeEEccCchhhHH
Q 025890          198 ASKVRLAANSCVFKDITEPGDYGGFPAVPIHE  229 (246)
Q Consensus       198 g~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~  229 (246)
                      |++++|+++|+|++|+|+++++.|+|||.+++
T Consensus       150 G~~~vIgagsvV~kdvp~~~i~~G~PAk~ir~  181 (182)
T d1ocxa_         150 GDNVVVASGAVVTKDVPDNVVVGGNPARIIKK  181 (182)
T ss_dssp             CTTCEECTTCEECSCBCSSEEEETTTTEEEEE
T ss_pred             CCCCEECCCCEEccCCCCCeEEEeeCCEEEee
Confidence            99999999999999999999999999998764

>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Ferripyochelin binding protein
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.81  E-value=1.2e-19  Score=138.61  Aligned_cols=58  Identities=22%  Similarity=0.338  Sum_probs=51.4

Q ss_pred             cceEECCCeEECcCcEECCCcEECCCCEEccCcEEec--cCCCCCeEEccCchhhHHHHH
Q 025890          175 GSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFK--DITEPGDYGGFPAVPIHEWRR  232 (246)
Q Consensus       175 ~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~--~~~~~~~~~g~p~~~~~~~~~  232 (246)
                      ..+.||++|+||.++.|.+++.||++++|+++|+|++  ++||++++.|+|||.++++.+
T Consensus        87 ~~~~Ig~~~~ig~~~~i~~gv~Ig~~~vIgagsvV~~~~~i~~~~iv~G~Pak~i~~~~~  146 (173)
T d1v3wa_          87 HGAKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNKEIPDYSLVLGVPGKVVRQLTE  146 (173)
T ss_dssp             ESCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTTEEEEETTEEEEEECCH
T ss_pred             eeeecCCcccccceeeecCCEEEcceeEEcCCcEEeCCeEeCCCCEEcCCCceEecCCCH
Confidence            4588999999999999999999999999999999984  799999999999998776543

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.79  E-value=2.5e-18  Score=133.42  Aligned_cols=168  Identities=17%  Similarity=0.243  Sum_probs=114.2

Q ss_pred             ceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECC----ceEE-eccEECCCcEECCCeEEC
Q 025890           22 GIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGF----NVAL-SNCIIGDSCIIHNGVCIG   96 (246)
Q Consensus        22 ~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~----~~~I-~~~~Ig~~~~I~~~~~i~   96 (246)
                      ..+++++.|++++.|++++.|+++++|+++++|+++++|. ++.||+++.|..    ...+ .++.||+++.++.++.++
T Consensus         9 ~~I~~~v~Ig~~~~I~~~vvI~~~v~IG~~~~I~~~~~i~-~~~IG~~~~I~~~~i~~~~~g~~~~Ig~~~~i~~~~~i~   87 (196)
T d1g97a1           9 TYIDIDVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVV-DSTIGAGAVITNSMIEESSVADGVIVGPYAHIRPNSSLG   87 (196)
T ss_dssp             CEECTTCEECTTCEECTTCEEESSCEECTTCEECTTCEEE-SCEECTTCEECSCEEESCEECTTCEECSSCEECSSCEEC
T ss_pred             EEECCCcEECCCCEECCCCEECCCcEECCCceEcCceEee-eeecccCccccccceeeccccCcceeecceecccccccc
Confidence            3577778888888888888888888888888888888774 467777766543    1233 445555666655555555


Q ss_pred             CCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCC-------EEccCcEECCCcEEcc
Q 025890           97 QDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLV-------QIGHNVAIGKSCMLCG  169 (246)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~-------~i~~~~~Ig~~~~i~~  169 (246)
                      ......         .........+++.+.++.++.+..     ...+.++.++.+.       ...+.+.||++++++.
T Consensus        88 ~~~~i~---------~~~~~~~~~~~~~~~~~~~~~i~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~Ig~~~~iG~  153 (196)
T d1g97a1          88 AQVHIG---------NFVEVKGSSIGENTKAGHLTYIGN-----CEVGSNVNFGAGTITVNYDGKNKYKTVIGNNVFVGS  153 (196)
T ss_dssp             TTCEEE---------EEEEEESCEECTTCEEEEEEEEES-----EEECSSCEECTTCEEECBSSSCBCCEEECTTCEECT
T ss_pred             cceeec---------ccccceeeecCcceEecceEEecc-----eeecceeecCCCeEEeecceeeeeeeEEecCCEEee
Confidence            321100         001112556777777777777664     3444444443333       3457888999999999


Q ss_pred             ceeEecceEECCCeEECcCcEECCCcEECCCCEEccC
Q 025890          170 QVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN  206 (246)
Q Consensus       170 ~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~  206 (246)
                      ++.+.++++||++++||++++|.++  +++++++...
T Consensus       154 ~~~I~~gv~IG~~s~IgagsvVtkd--vp~~~i~~G~  188 (196)
T d1g97a1         154 NSTIIAPVELGDNSLVGAGSTITKD--VPADAIAIGR  188 (196)
T ss_dssp             TCEEESSCEECTTCEECTTCEECSC--BCTTCEECCC
T ss_pred             eeEEcCCcEECCCCEECCCCEECcC--cCCCCEEEec
Confidence            9999999999999999999999988  6788877654

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

Probab=99.79  E-value=3.3e-18  Score=142.92  Aligned_cols=85  Identities=15%  Similarity=0.247  Sum_probs=58.5

Q ss_pred             CeEECCCCEECCCCEEccCcEECCCcEEccc-eeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCe
Q 025890          140 DTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQ-VGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGD  218 (246)
Q Consensus       140 ~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~-~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~  218 (246)
                      ++.|++++.+..++.+.+++.|++++.+.++ +.+.++++|+++++|++++.|.+++.|++++.|++.+-.+.+++++..
T Consensus       229 ~~~Ig~~a~I~g~~~i~~~v~Ig~~a~i~G~~v~i~~~~~I~~~a~I~g~~~I~~~v~i~~~a~v~a~~~~~~~l~g~~~  308 (320)
T d2f9ca1         229 SSQVAEHALIEGNCVLKHHVLVGGHAEVRGGPILLDDRVLIEGHACIQGEILIERQVEISGRAAVIAFDDNTIHLRGPKV  308 (320)
T ss_dssp             SCEECSSCEEESSEEECTEEEECSSCEEESSSEEECSEEEECSSCEEESSEEECSEEEECSSCEEECCSSCCEEECSSEE
T ss_pred             ccccCcceeeeeeccccCceEECCCeEEeCCeeEECCceEECCCcEEcccCEEeCCCEECCCeEEEEecCCeEEccCCcE
Confidence            4555555666666666666666666666544 456666777777777777777788888888888777777777777776


Q ss_pred             EEccCc
Q 025890          219 YGGFPA  224 (246)
Q Consensus       219 ~~g~p~  224 (246)
                      +.|++.
T Consensus       309 i~G~~~  314 (320)
T d2f9ca1         309 INGEDR  314 (320)
T ss_dssp             ECSSCE
T ss_pred             EcCccc
Confidence            666654

>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: gamma-carbonic anhydrase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

Probab=99.78  E-value=2e-19  Score=141.53  Aligned_cols=68  Identities=21%  Similarity=0.241  Sum_probs=40.6

Q ss_pred             eEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEe
Q 025890          141 TVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVF  210 (246)
Q Consensus       141 ~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~  210 (246)
                      +.||+++.++.++.+..+++||++++|+.++.+.+ .+||++|+|++++++ .++.|++++.|.+++++.
T Consensus       104 ~~IG~~v~IG~~~~i~g~~~IGd~~~IG~gs~i~~-~~IG~~~vIg~~svv-~g~~i~~g~~I~~g~~v~  171 (210)
T d1qrea_         104 VYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFK-SKVGNNCVLEPRSAA-IGVTIPDGRYIPAGMVVT  171 (210)
T ss_dssp             EEECTTCEECTTCEEEEEEEECTTCEECTTCEEEE-EEECTTCEECTTCEE-ESCEECTTBEECTTCEEC
T ss_pred             eeeccccccccccccccCCcccCCcEeeCCccccc-cccccCcEEecCcEe-cCcEeCCCcEECCCcEEe
Confidence            44555555555555555566666666666666654 467777777777665 345566666665555554

>d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.78  E-value=1.3e-19  Score=142.29  Aligned_cols=59  Identities=24%  Similarity=0.270  Sum_probs=55.4

Q ss_pred             eEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhhHHH
Q 025890          172 GIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEW  230 (246)
Q Consensus       172 ~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~~  230 (246)
                      ...++++||++|+||++++|+++++||++|+|+++|+|++|+|+++++.|+|||.++++
T Consensus       104 ~~~g~v~Igd~v~IG~~s~I~~gv~IG~~~vIgagSvVtkdvp~~si~~G~PAk~ik~R  162 (208)
T d1xata_         104 QPAGDTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTGDVEPYAIVGGNPARTIRKR  162 (208)
T ss_dssp             CCCCCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTTTEEEEES
T ss_pred             cccCCEEEcCCeEECccccccCCeEeCCCCEEeCceEEeecCCcCcEEEecCCEEEecc
Confidence            34567999999999999999999999999999999999999999999999999998875

>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: gamma-carbonic anhydrase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

Probab=99.76  E-value=4.6e-18  Score=133.66  Aligned_cols=53  Identities=25%  Similarity=0.332  Sum_probs=26.3

Q ss_pred             cCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEe
Q 025890          157 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVF  210 (246)
Q Consensus       157 ~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~  210 (246)
                      +.+.||++++|+.++.+.++++||++|+||+++++.+. +||++++|++++++.
T Consensus       102 ~~~~IG~~v~IG~~~~i~g~~~IGd~~~IG~gs~i~~~-~IG~~~vIg~~svv~  154 (210)
T d1qrea_         102 YAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFKS-KVGNNCVLEPRSAAI  154 (210)
T ss_dssp             ESEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEE-EECTTCEECTTCEEE
T ss_pred             cceeeccccccccccccccCCcccCCcEeeCCcccccc-ccccCcEEecCcEec
Confidence            34444444444444444445555555555555555433 455555555444443

>d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Putative acetyltransferase/acyltransferase BC4754
species: Bacillus cereus [TaxId: 1396]

Probab=99.74  E-value=4e-17  Score=124.33  Aligned_cols=123  Identities=20%  Similarity=0.278  Sum_probs=82.4

Q ss_pred             ECCCCEECCCcEECCCCEECCceEE----eccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECc
Q 025890           54 IGSGTVVGPAVTIGQSTNIGFNVAL----SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGA  129 (246)
Q Consensus        54 Ig~~~~i~~~~~ig~~~~I~~~~~I----~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~  129 (246)
                      |++++.|.+++.||++|.|+++|+|    ..+.||+++.+++++.+....                ...+.+|+++.+..
T Consensus        21 I~~~a~I~~~v~IG~~~~Ig~~~~I~~~~~~i~IG~~~~i~~~~~~~~~~----------------~~~~~ig~~~~~~~   84 (172)
T d1xhda_          21 IADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSP----------------QYPLILEDDVTVGH   84 (172)
T ss_dssp             ECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCT----------------TCCEEECTTCEECT
T ss_pred             ECCCCEEeCCEEECCCcEecCCcccccccccccccceeeeeeeceeccCC----------------cCCeeeeeeeeeee
Confidence            3333333333444444444444444    346788888888888886422                12567777777777


Q ss_pred             ccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEcc-CcE
Q 025890          130 NSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA-NSC  208 (246)
Q Consensus       130 ~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~-~s~  208 (246)
                      ++.+.                       ++.|+++++++.++.+.++++||++|+|+++++|.++..|+++++++. .+.
T Consensus        85 ~~~~~-----------------------~~~i~~~~~ig~~~~i~~gv~IG~~~~IgagsvV~~~~~i~~~~v~~G~Pak  141 (172)
T d1xhda_          85 QVILH-----------------------SCHIKKDALIGMGSIILDGAEIGEGAFIGAGSLVSQGKKIPPNTLAFGRPAK  141 (172)
T ss_dssp             TCEEE-----------------------SCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEEEETTEE
T ss_pred             eeccc-----------------------ccccccceEEecccEeeCCcEEcCcccccceEEEeeCeEECCCeEEEecCcE
Confidence            76553                       455666666666667778899999999999999999999999998754 466


Q ss_pred             EeccCCC
Q 025890          209 VFKDITE  215 (246)
Q Consensus       209 v~~~~~~  215 (246)
                      +.+++++
T Consensus       142 ~i~~~~~  148 (172)
T d1xhda_         142 VIRELTA  148 (172)
T ss_dssp             EEEECCH
T ss_pred             EECCCCH
Confidence            6666554

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=2.2e-16  Score=122.94  Aligned_cols=161  Identities=18%  Similarity=0.242  Sum_probs=109.8

Q ss_pred             ccCCCceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECC----------CcEECCCCEECCceEE-eccEECC
Q 025890           17 WHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGP----------AVTIGQSTNIGFNVAL-SNCIIGD   85 (246)
Q Consensus        17 ~~~~~~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~----------~~~ig~~~~I~~~~~I-~~~~Ig~   85 (246)
                      .....+.++++++|++++.|+++++|+++++|++++.|+..+.+..          ++.++.++.+++++.+ ....+++
T Consensus        10 ~i~~~v~IG~~v~Ig~~vvI~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~~~~   89 (201)
T d2oi6a1          10 DLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGPFARLRPGAELLE   89 (201)
T ss_dssp             EEEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECSSCEEESCEECTTCEECSSEEECTTCEECT
T ss_pred             EECceEEECCCCEECCCCEECCceEECCCcEECCCEEEeeeccCCceeeeeeecccccccccccccCcccccccceeeee
Confidence            4555567788888888888888888888888888887765544321          1222333333333333 2233333


Q ss_pred             CcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEE-------ccC
Q 025890           86 SCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQI-------GHN  158 (246)
Q Consensus        86 ~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i-------~~~  158 (246)
                      .+.++..+.++                     .+.+|+++.+++.+.+.     ++.+++++.++.++..       ...
T Consensus        90 ~~~i~~~~~~~---------------------~~~ig~~~~i~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~~~~~  143 (201)
T d2oi6a1          90 GAHVGNFVEMK---------------------KARLGKGSKAGHLTYLG-----DAEIGDNVNIGAGTITCNYDGANKFK  143 (201)
T ss_dssp             TCEEEEEEEEE---------------------EEEECTTCEEEEEEEEE-----EEEECTTCEECTTCEEECBSSSCBCC
T ss_pred             eeeecceeeee---------------------eeeeCCCeEEceeeeec-----ccCcCccccccCceeEeecccccccc
Confidence            33333333332                     67788888888777665     4677777777776543       346


Q ss_pred             cEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEcc
Q 025890          159 VAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA  205 (246)
Q Consensus       159 ~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~  205 (246)
                      +.|+++++++.++.+..+++||+++.|+++++|.+++  ++++++-+
T Consensus       144 ~~Ig~~v~iG~~~~I~~~v~IG~~s~IgagsvV~kdV--p~~si~vg  188 (201)
T d2oi6a1         144 TIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRNV--GENALAIS  188 (201)
T ss_dssp             EEECTTCEECTTCEEESSEEECTTCEECTTCEECSCB--CTTCEECC
T ss_pred             cEeCCcEEEeEeeeEcCCcEECCCCEECCCCEEeeec--CCCCEEEe
Confidence            8999999999999999999999999999999999984  78886443

>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Serine acetyltransferase
domain: Serine acetyltransferase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.69  E-value=4.2e-17  Score=130.28  Aligned_cols=104  Identities=22%  Similarity=0.336  Sum_probs=80.2

Q ss_pred             ceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEE
Q 025890          118 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI  197 (246)
Q Consensus       118 ~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~i  197 (246)
                      .+.|+.++.|++++.|..+  .++.|++.+.+++++.+.++++++.....    ....+++||++|+||+|++|.++++|
T Consensus       137 g~~I~~~~~Ig~g~~i~h~--~givig~~~~ig~~~~i~~~v~~~~~~~~----~~~~~~~Ig~~v~IGaga~Ilg~v~I  210 (241)
T d1ssqa_         137 DVDIHPAAKIGHGIMFDHA--TGIVVGETSVIENDVSILQGVTLGGTGKE----SGDRHPKVREGVMIGAGAKILGNIEV  210 (241)
T ss_dssp             SCEECTTCEECSSCEESSC--TTCEECTTCEECTTCEECTTCEEECCSSS----CSSCSCEECTTCEECTTCEEESSCEE
T ss_pred             eeccccCCEEccCcccCcc--ceEEEeccceecCCeeecccccccccccC----CCCCCCccCCCeEECCCCEEcCCcEE
Confidence            5566666666666666543  35666666666666666666666543221    11356899999999999999999999


Q ss_pred             CCCCEEccCcEEeccCCCCCeEEccCchhh
Q 025890          198 ASKVRLAANSCVFKDITEPGDYGGFPAVPI  227 (246)
Q Consensus       198 g~~~~v~~~s~v~~~~~~~~~~~g~p~~~~  227 (246)
                      |++++|+++|+|+||+|+++++.|+|||.+
T Consensus       211 G~~a~IgAgsvV~kdVp~~~vv~G~PAr~I  240 (241)
T d1ssqa_         211 GKYAKIGANSVVLNPVPEYATAAGVPARIV  240 (241)
T ss_dssp             CTTCEECTTCEECSCBCTTCEEETTTTEEC
T ss_pred             CCCCEECCCCEECCCCCCCCEEEecCcEEe
Confidence            999999999999999999999999999975

>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Ferripyochelin binding protein
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.65  E-value=4.5e-15  Score=112.84  Aligned_cols=74  Identities=23%  Similarity=0.279  Sum_probs=54.9

Q ss_pred             CeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccC-cEEeccCC
Q 025890          140 DTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN-SCVFKDIT  214 (246)
Q Consensus       140 ~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~-s~v~~~~~  214 (246)
                      +..++.+...... .+.+.+.||++++++.++.+..+++||++|+|+++++|.++..|+++++++.. +.+.++++
T Consensus        71 ~~~~~~~~~~~~~-~~~~~~~Ig~~~~ig~~~~i~~gv~Ig~~~vIgagsvV~~~~~i~~~~iv~G~Pak~i~~~~  145 (173)
T d1v3wa_          71 PTEIGEYVTIGHN-AMVHGAKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNKEIPDYSLVLGVPGKVVRQLT  145 (173)
T ss_dssp             CEEECSSCEECTT-CEEESCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTTEEEEETTEEEEEECC
T ss_pred             CcccCcceeeeee-eeeeeeecCCcccccceeeecCCEEEcceeEEcCCcEEeCCeEeCCCCEEcCCCceEecCCC
Confidence            3444444444333 23367788888888888888899999999999999999999999999988554 55555544

>d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Galactoside acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=2.2e-15  Score=116.92  Aligned_cols=63  Identities=25%  Similarity=0.331  Sum_probs=48.1

Q ss_pred             CCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEcc-CcEEeccCC
Q 025890          150 DNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA-NSCVFKDIT  214 (246)
Q Consensus       150 ~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~-~s~v~~~~~  214 (246)
                      .........+.||++++++.++.+.++++||++|.|+++|+|.++  |+++++++. .+.+.|.+.
T Consensus       122 ~~~~~~~~~v~Igd~v~IG~~~~I~~Gv~IG~~~vIgagSvV~kd--vp~~~iv~G~PArvik~~~  185 (200)
T d1krra_         122 KNGEMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSIVTKD--IPPNVVAAGVPCRVIREIN  185 (200)
T ss_dssp             TTCCBEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEETTTTEEEEECC
T ss_pred             ccceeecceEEEccCcccceeeecccccccCCCcEEeCCCEEeeE--cCCCcEEEEeCCEEEEeCC
Confidence            344455567788888888888888899999999999999999987  578886644 356655554

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

Probab=99.60  E-value=6e-14  Score=116.71  Aligned_cols=198  Identities=15%  Similarity=0.155  Sum_probs=113.0

Q ss_pred             ccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEE------eccEECCCcEECCCeEECCC
Q 025890           25 HQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL------SNCIIGDSCIIHNGVCIGQD   98 (246)
Q Consensus        25 ~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I------~~~~Ig~~~~I~~~~~i~~~   98 (246)
                      +++|.+.+++.|+.+|+|++++.|+++++|+++++|+ ++.|.+++.|++++.|      ....+..+..+.+++.+...
T Consensus        61 ~~nA~V~~~a~I~~na~i~~~~~I~~~a~Ig~n~~ig-~a~I~~~a~I~~n~~i~~~~~i~~~~i~g~~~v~~~a~i~g~  139 (320)
T d2f9ca1          61 DENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWID-RADISDGARISDNVTIQSSSVREECAIYGDARVLNQSEILAI  139 (320)
T ss_dssp             STTCEECSSCEECTTCEECSSCEECSSCEECSSCEES-SCEECSSEEECSSCEEESCEECSSEEECSSCEEESSCEECCC
T ss_pred             CCCcEECCCCEECCCCEECCCcEECCCcEECCcEEEC-CcEEEcCcEEeeeeeecCccEEeeeEEECCeEEeCCcEEECC
Confidence            3455555556666666666666666666665555553 3444444444444444      44555566666666655432


Q ss_pred             C-ceeEEcCCCceeecCcccceEECCCcEECcccEEcCCC-----------------c------------cCeEECCCCE
Q 025890           99 G-FGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGS-----------------W------------RDTVIGDHSK  148 (246)
Q Consensus        99 ~-~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~-----------------~------------~~~~ig~~~~  148 (246)
                      . +..................+.+.+++.|+.++++....                 .            .++.|+.++.
T Consensus       140 ~~~~~~~~~~~~i~~~~~~~~~~I~~~~~Iggna~i~~~~i~~~a~V~g~a~i~g~v~~~~~v~~~~~v~gn~~I~~~~~  219 (320)
T d2f9ca1         140 QGLTHEHAQILQIYDRATVNHSRIVHQVQLYGNATITHAFIEHRAEVFDFALIEGDKDNNVWICDCAKVYGHARVIAGTE  219 (320)
T ss_dssp             CCCSSSTTCCCEECSSCEEESCEECSSCEECSSCEEESCEECSSCEECSSCEEECCSSCCCEECSSCEECSSCEEECCSS
T ss_pred             CceeecccCcceecccceeeeeEEeeeeeeCCCccccceeeccceEEeeeeeecceeeccccccccccccccchhcCCee
Confidence            1 11100000111122222344555555555555443211                 0            2344555555


Q ss_pred             ECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCc-EECCCcEECCCCEEccCcEEeccC--CCCCeEEccC
Q 025890          149 IDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRV-AVRDHVSIASKVRLAANSCVFKDI--TEPGDYGGFP  223 (246)
Q Consensus       149 v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~-~v~~~~~ig~~~~v~~~s~v~~~~--~~~~~~~g~p  223 (246)
                      +..++.+..++.|++++.+..++.+.+++.|++++.|.+++ .+...+.|++++.|+.++.+..++  ..++.+.+.+
T Consensus       220 i~~~~~i~~~~~Ig~~a~I~g~~~i~~~v~Ig~~a~i~G~~v~i~~~~~I~~~a~I~g~~~I~~~v~i~~~a~v~a~~  297 (320)
T d2f9ca1         220 EDAIPTLRYSSQVAEHALIEGNCVLKHHVLVGGHAEVRGGPILLDDRVLIEGHACIQGEILIERQVEISGRAAVIAFD  297 (320)
T ss_dssp             TTCCCEECSSCEECSSCEEESSEEECTEEEECSSCEEESSSEEECSEEEECSSCEEESSEEECSEEEECSSCEEECCS
T ss_pred             eecccccccccccCcceeeeeeccccCceEECCCeEEeCCeeEECCceEECCCcEEcccCEEeCCCEECCCeEEEEec
Confidence            55666667777788888888888888888888888887765 466678899999999998888754  5555554433

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=99.57  E-value=5.8e-14  Score=108.40  Aligned_cols=62  Identities=26%  Similarity=0.366  Sum_probs=43.5

Q ss_pred             EECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEcc
Q 025890          142 VIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA  205 (246)
Q Consensus       142 ~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~  205 (246)
                      .+++++.+++++.+...+.||++|+++.++.+.++++||++|.||++++|.++  +++++++..
T Consensus       126 ~Ig~~~~i~~~~~i~g~v~Ig~~~~IG~~s~I~~~v~Ig~~~~IgagsvV~~d--v~~~~~~~G  187 (193)
T d3bswa1         126 VIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDSILGGGATLVKN--QDEKGVFVG  187 (193)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCSCCEECC
T ss_pred             eccccccccccccccccceeeccccCCceeeEcCCeEECCCCEECCCCEECcC--CCCCcEEEE
Confidence            33333444444555566777777777777777888999999999999999887  456665543

>d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
species: Mycobacterium bovis [TaxId: 1765]

Probab=99.56  E-value=5.3e-14  Score=111.29  Aligned_cols=51  Identities=18%  Similarity=0.280  Sum_probs=24.8

Q ss_pred             CceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEE
Q 025890           21 GGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNI   72 (246)
Q Consensus        21 ~~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I   72 (246)
                      +..+-|++.+..+++|++++++. ++++.-+++|+++|+|..++++|..|+|
T Consensus       102 g~RvvPga~VR~GayI~~~vVlm-ps~VNigA~ig~~~midt~a~vgs~aqI  152 (274)
T d3tdta_         102 GFRVVPPATVRQGAFIARNTVLM-PSYVNIGAYVDEGTMVDTWATVGSCAQI  152 (274)
T ss_dssp             CCEECTTCEEBTTCEECTTCEEC-SEEECTTCEECTTCEECTTEEECTTCEE
T ss_pred             CEEeCCCceeccCcEECCCcEEe-eeEeccccEEcCCcEEcccceecceeEE
Confidence            34444555555555555555333 3455555555555555544444444443

>d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
species: Mycobacterium bovis [TaxId: 1765]

Probab=99.52  E-value=5.1e-14  Score=111.38  Aligned_cols=85  Identities=22%  Similarity=0.379  Sum_probs=62.0

Q ss_pred             eEECCCCEECCCCEEccCcEECCCcEEccceeEec--------ceEECCCeEECcCcEECCCcEECCCCEEccCcEEecc
Q 025890          141 TVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAG--------SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKD  212 (246)
Q Consensus       141 ~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~--------~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~  212 (246)
                      +.||+++.+..++.+++.++||++|.|++++.+++        ++.|+|+|+||+++.|..++.|+++++|++|++++++
T Consensus       132 A~ig~~~midt~a~vgs~aqIG~~vhis~g~~igGvlep~~~~p~iIed~~~IGa~s~v~egv~Vg~~avi~~gv~i~~~  211 (274)
T d3tdta_         132 AYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEVVEGVIVEEGSVISMGVYLGQS  211 (274)
T ss_dssp             CEECTTCEECTTEEECTTCEECTTCEECTTCEECCSBTTBCSSCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred             cEEcCCcEEcccceecceeEECCCeEECCCcEEEeccccCCCCCcEEecCcEeccCceEecCEEecCceEeccceEEecc
Confidence            44444455555555555555555555555555554        5789999999999999999999999999999999984


Q ss_pred             ---------------CCCCCeEE-c-cCch
Q 025890          213 ---------------ITEPGDYG-G-FPAV  225 (246)
Q Consensus       213 ---------------~~~~~~~~-g-~p~~  225 (246)
                                     +|+++.+. | .|.+
T Consensus       212 t~i~d~~~g~~~~g~vP~~svvv~gs~p~~  241 (274)
T d3tdta_         212 TRIYDRETGEIHYGRVPAGSVVVSGNLPSK  241 (274)
T ss_dssp             CCEEETTTCCEESSEECTTEEEEEEEEECT
T ss_pred             ccceeccCCcEeccccCCCCEEecCceecC
Confidence                           89999654 4 3554

>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=99.50  E-value=5.7e-15  Score=107.68  Aligned_cols=50  Identities=14%  Similarity=0.191  Sum_probs=23.2

Q ss_pred             EEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcE
Q 025890          154 QIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSC  208 (246)
Q Consensus       154 ~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~  208 (246)
                      .++++++||+++.+.....+.+..++++++++..+.     +.|+++++|+++++
T Consensus        85 iIg~~~~IG~g~~i~~~~~~~~~~~~~~~~~i~~g~-----vvIg~~~~I~~g~v  134 (135)
T d1yp2a1          85 IIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGI-----VTVIKDALIPSGII  134 (135)
T ss_dssp             EECTTCEECTTCEECCSSCCSCEEEGGGTEEEETTE-----EEECTTCEECTTCB
T ss_pred             eecCCCEECCCcEECCCcccccceeeCCCEEECCCe-----EEECCCCEECcCcC
Confidence            333444444444444444444444444444444442     23556666666554

>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Enterococcus faecium, VAT(D) [TaxId: 1352]

Probab=99.49  E-value=2.2e-15  Score=117.52  Aligned_cols=144  Identities=18%  Similarity=0.106  Sum_probs=83.8

Q ss_pred             EcCCcEECcCcEECCCcEECCCCEECCCc-EECCCCEECCceEE-eccEECCCcEECCCeEECCCCceeEEcCCCceeec
Q 025890           36 IEVGAIVHSKAVLGANVCIGSGTVVGPAV-TIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKK  113 (246)
Q Consensus        36 I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~-~ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~  113 (246)
                      +...+.|++.+.++++++||++++|.+.+ .++..+.+++++.| .++.||++|.|++++.|....              
T Consensus        14 ~~~~~~I~~~v~i~~nV~IG~~~~I~~~~~~~~~~~~i~~~~~I~~~v~IG~~~~Ig~gv~I~~~~--------------   79 (203)
T d1mr7a_          14 NKSVQFIKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGVTIIMNG--------------   79 (203)
T ss_dssp             CCSEEEHHHHHTTSTTEEECTTCEEECSSSCCGGGGEESCCGGGCCCEEECSSCEECTTCEEECGG--------------
T ss_pred             CCceEEECCCeEECCCEEECCCcEEcCCcCcccCceEEeeeCEECCccEECCCeEECCCCcEeeec--------------
Confidence            33334444444455555555555554332 22344445555544 345666666666666653211              


Q ss_pred             CcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECC
Q 025890          114 PQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRD  193 (246)
Q Consensus       114 ~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~  193 (246)
                          ...+++++.+.....       .....+.........+.+.+.||++|+|+.++.+..+++||++|+||++|+|.+
T Consensus        80 ----~~~i~d~~~~~~~~~-------~~~~~~~~~~~~~~~i~g~v~IGd~v~IG~~~~I~~gv~IG~~~~IgagSvV~k  148 (203)
T d1mr7a_          80 ----ANHRMDGSTYPFNLF-------GNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVK  148 (203)
T ss_dssp             ----GCCCCSSCCCCGGGG-------CTTGGGGCCCGGGSCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             ----CcEeccCceEeeeee-------cccccCcccccccccCccCeEECCEEEECCceeEEeEEEEcCCCEEecCeEEee
Confidence                222333332221110       112223333444455667888899999999999999999999999999999998


Q ss_pred             CcEECCCCEEccC
Q 025890          194 HVSIASKVRLAAN  206 (246)
Q Consensus       194 ~~~ig~~~~v~~~  206 (246)
                      +  ++++++++..
T Consensus       149 d--v~~~~i~~G~  159 (203)
T d1mr7a_         149 D--IAPYMLAGGN  159 (203)
T ss_dssp             C--BCTTEEEEET
T ss_pred             e--CCCCEEEEEe
Confidence            7  5788766544

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=2.9e-14  Score=93.45  Aligned_cols=69  Identities=25%  Similarity=0.439  Sum_probs=49.7

Q ss_pred             EECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceE
Q 025890           41 IVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNAR  120 (246)
Q Consensus        41 ~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  120 (246)
                      +|.+++.|++++.|+++++|++++.||++|.|+++|.|.++.|++++.|++++.|.                     ++.
T Consensus        10 ~I~g~v~IG~~~~I~~~~~i~g~~~IG~~v~Ig~~~~i~~~~Ig~~~~I~~~s~i~---------------------~~~   68 (78)
T d1fxja1          10 DLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVE---------------------DAN   68 (78)
T ss_dssp             EEEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECTTCEEE---------------------SEE
T ss_pred             EEeccEEECCCCEECCccEEeCCcEECCCCEECCCeEEecCEECCCCEEcCCcEEE---------------------CCE
Confidence            45555666666666777777667777777777777777777778888888877775                     677


Q ss_pred             ECCCcEECcc
Q 025890          121 IGNHVEIGAN  130 (246)
Q Consensus       121 Ig~~~~ig~~  130 (246)
                      ||+++.|||+
T Consensus        69 Ig~~~~IGPf   78 (78)
T d1fxja1          69 LAAACTIGPF   78 (78)
T ss_dssp             ECTTCEESCC
T ss_pred             ECCCCEECcC
Confidence            7777777763

>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=99.44  E-value=3.6e-14  Score=103.32  Aligned_cols=49  Identities=12%  Similarity=0.117  Sum_probs=20.5

Q ss_pred             EECCCCEECCCCEEccCcEECCCcEEccceeEecc-eEECCCeEECcCcE
Q 025890          142 VIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGS-ATIGDYVTLGGRVA  190 (246)
Q Consensus       142 ~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~-~~Ig~~~~Ig~~~~  190 (246)
                      .|++++.+++++.+...+.+.+++.+.....+.++ ++|++++.|+++++
T Consensus        85 iIg~~~~IG~g~~i~~~~~~~~~~~~~~~~~i~~g~vvIg~~~~I~~g~v  134 (135)
T d1yp2a1          85 IIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGII  134 (135)
T ss_dssp             EECTTCEECTTCEECCSSCCSCEEEGGGTEEEETTEEEECTTCEECTTCB
T ss_pred             eecCCCEECCCcEECCCcccccceeeCCCEEECCCeEEECCCCEECcCcC
Confidence            34444444333333333333333333333333333 44555555555543

>d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Maltose O-acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=4.5e-13  Score=102.16  Aligned_cols=67  Identities=22%  Similarity=0.329  Sum_probs=49.3

Q ss_pred             ECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEcc-CcEEec
Q 025890          143 IGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA-NSCVFK  211 (246)
Q Consensus       143 ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~-~s~v~~  211 (246)
                      +.+......++.++..+.||++++++.++.+..+++||++|.||++++|.++  |++++++.. .+.+.|
T Consensus       113 ~~~~~~~~~~~~~~~~v~Ig~~~~iG~~~~I~~Gv~IG~~~vIgagsvV~kd--vp~~~i~~G~PAk~ir  180 (182)
T d1ocxa_         113 PIDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKD--VPDNVVVGGNPARIIK  180 (182)
T ss_dssp             CSSHHHHTTTCBEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCSSEEEETTTTEEEE
T ss_pred             ccceeeeeccceEcceeEECceEeeCceeeccCcEEECCCCEECCCCEEccC--CCCCeEEEeeCCEEEe
Confidence            3344444455566677788888888888888999999999999999999987  567776543 344443

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=3.5e-13  Score=88.14  Aligned_cols=69  Identities=22%  Similarity=0.340  Sum_probs=58.9

Q ss_pred             eeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCC
Q 025890           23 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNG   92 (246)
Q Consensus        23 ~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~   92 (246)
                      .+..++.+++++.|++++.|.+++.||++++|+++|+|. ++.|++++.|++++.|+++.|+++|.||++
T Consensus        10 ~I~g~v~IG~~~~I~~~~~i~g~~~IG~~v~Ig~~~~i~-~~~Ig~~~~I~~~s~i~~~~Ig~~~~IGPf   78 (78)
T d1fxja1          10 DLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIK-NSVIGDDCEISPYTVVEDANLAAACTIGPF   78 (78)
T ss_dssp             EEEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEE-SCEECTTCEECTTCEEESEEECTTCEESCC
T ss_pred             EEeccEEECCCCEECCccEEeCCcEECCCCEECCCeEEe-cCEECCCCEEcCCcEEECCEECCCCEECcC
Confidence            466677888888888888888888889999999999996 789999999999999988888888888864

>d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.16  E-value=1.9e-11  Score=95.06  Aligned_cols=53  Identities=15%  Similarity=0.206  Sum_probs=43.1

Q ss_pred             EccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccC-cEE
Q 025890          155 IGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN-SCV  209 (246)
Q Consensus       155 i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~-s~v  209 (246)
                      +.+++.||++|+|+.++.+.++++||++|+||++++|.+++  +++++++.. +.+
T Consensus       105 ~~g~v~Igd~v~IG~~s~I~~gv~IG~~~vIgagSvVtkdv--p~~si~~G~PAk~  158 (208)
T d1xata_         105 PAGDTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTGDV--EPYAIVGGNPART  158 (208)
T ss_dssp             CCCCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSCB--CTTEEEETTTTEE
T ss_pred             ccCCEEEcCCeEECccccccCCeEeCCCCEEeCceEEeecC--CcCcEEEecCCEE
Confidence            34678889999999999999999999999999999999884  577755443 444

>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Serine acetyltransferase
domain: Serine acetyltransferase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.00  E-value=2.1e-09  Score=84.92  Aligned_cols=47  Identities=17%  Similarity=0.350  Sum_probs=39.8

Q ss_pred             cCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEcc
Q 025890          157 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA  205 (246)
Q Consensus       157 ~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~  205 (246)
                      ...+||++++|+.++.+.++++||+++.||+|++|.++  ++++++++.
T Consensus       188 ~~~~Ig~~v~IGaga~Ilg~v~IG~~a~IgAgsvV~kd--Vp~~~vv~G  234 (241)
T d1ssqa_         188 RHPKVREGVMIGAGAKILGNIEVGKYAKIGANSVVLNP--VPEYATAAG  234 (241)
T ss_dssp             CSCEECTTCEECTTCEEESSCEECTTCEECTTCEECSC--BCTTCEEET
T ss_pred             CCCccCCCeEECCCCEEcCCcEECCCCEECCCCEECCC--CCCCCEEEe
Confidence            45678888888888888999999999999999999998  577776654