Citrus Sinensis ID: 025895

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240------
Protein Sequence
MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSSKYHL
Secondary Structure (PSIPRED)
ccccccEEEEEHHHHHccccccEEEEEEEccccccEEEEEEEEEEcccccHHHHccccccccccEEccccccEEEEEEcccccccccccEEEEcccccccccccccccccccccccccccccccccccccccEEEccEEEEEEEccccccccEEEEccEEEEccccccccEEEEEccccccccHHEEEEcccccccEEEEEcccHHHHHHHHHHHHcccccEEEEccccccHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEEEcccccccEEEEEEEccccccEEEEEEEEEEEcHHHHHHHHcccccccccEccccEEEEEEEEEcccccccccccEEEEcccccccccHHHHccccccccccHHHHHcccccccccccEEEccEEEEccccccccEcEEEEEHHHEEEcccccccccHHHHHcHHHHHHHHHHcccccccccEEEEEcccHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHcccccEEcc
Coil and Loop (DISEMBL)
MSTEGQVITCKAavawepnkplviedvqvappqagEVRIKILFTALChtdaytwsgkdpeglfpcilgheAAGIVesvgegvtevqpgdhvipcyqaecreckfcksgktnlcgkvrgatgagvmmndrksrfsingkpiyhfmgtstfsQYTVVHdvsvakidpqapldkvcllgcgvptglgavwntakvepgsivAVFGLGTVGLAVAEGAKaagasrvigididpkkfdrgmscvssskyhl
Flexible Loop (DISEMBL)
mstegqvitckaavawepnkpLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFcksgktnlcgkvrgatgagvmmndRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEgakaagasrvigididpkkfdrgmscvssskyhl
Low Complexity Region (SEG)
MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVglavaegakaagaSRVIGIDIDPKKFDRGMSCVSSSKYHL
Disordered region (IsUnstruct)
******VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP*****************
Disordered Region (DISOPRED)
**TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSSKY**
Disordered Region (DISEMBL)
MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG***********
Disordered Region (DISPRO)
****GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSSKYHL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSSKYHL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	246	2.2.26 [Sep-21-2011]
A2XAZ3	381	Alcohol dehydrogenase cla	N/A	no	0.943	0.608	0.935	1e-127
Q0DWH1	381	Alcohol dehydrogenase cla	yes	no	0.943	0.608	0.931	1e-126
Q96533	379	Alcohol dehydrogenase cla	yes	no	0.947	0.614	0.927	1e-126
P93629	381	Alcohol dehydrogenase cla	N/A	no	0.939	0.606	0.939	1e-126
P80572	378	Alcohol dehydrogenase cla	N/A	no	0.943	0.613	0.887	1e-119
P79896	376	Alcohol dehydrogenase cla	N/A	no	0.943	0.617	0.673	3e-88
P12711	374	Alcohol dehydrogenase cla	yes	no	0.926	0.609	0.711	2e-87
P00333	379	Alcohol dehydrogenase 1 O	N/A	no	0.951	0.617	0.662	3e-87
P81600	375	Alcohol dehydrogenase cla	N/A	no	0.943	0.618	0.669	3e-87
P06525	379	Alcohol dehydrogenase cla	no	no	0.951	0.617	0.653	3e-87

>sp|A2XAZ3|ADHX_ORYSI Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. indica GN=ADHIII PE=3 SV=1

 Score =  452 bits (1164), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 217/232 (93%), Positives = 224/232 (96%)

Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST+GQVITCKAAVAWE NKP+ IEDVQVAPPQAGEVR+KILFTALCHTD YTWSGKDPEG
Sbjct: 4   STQGQVITCKAAVAWEANKPMTIEDVQVAPPQAGEVRVKILFTALCHTDHYTWSGKDPEG 63

Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR ATG
Sbjct: 64  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAATG 123

Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI+PQAPLDKVCLLGCGV T
Sbjct: 124 VGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCGVST 183

Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
           GLGAVWNTAKVE GSIVA+FGLGTVGLAVAEGAK+AGASR+IGIDID KKFD
Sbjct: 184 GLGAVWNTAKVEAGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDSKKFD 235

Oryza sativa subsp. indica (taxid: 39946)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 8EC: 4

>sp|Q0DWH1|ADHX_ORYSJ Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. japonica GN=Os02g0815500 PE=2 SV=1

 Score =  452 bits (1162), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 216/232 (93%), Positives = 224/232 (96%)

Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST+GQVITCKAAVAWE N+P+ IEDVQVAPPQAGEVR+KILFTALCHTD YTWSGKDPEG
Sbjct: 4   STQGQVITCKAAVAWEANRPMTIEDVQVAPPQAGEVRVKILFTALCHTDHYTWSGKDPEG 63

Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR ATG
Sbjct: 64  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAATG 123

Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI+PQAPLDKVCLLGCGV T
Sbjct: 124 VGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCGVST 183

Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
           GLGAVWNTAKVE GSIVA+FGLGTVGLAVAEGAK+AGASR+IGIDID KKFD
Sbjct: 184 GLGAVWNTAKVEAGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDSKKFD 235

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

>sp|Q96533|ADHX_ARATH Alcohol dehydrogenase class-3 OS=Arabidopsis thaliana GN=ADH2 PE=1 SV=2

 Score =  451 bits (1161), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 216/233 (92%), Positives = 226/233 (96%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
           M+T+GQVITCKAAVA+EPNKPLVIEDVQVAPPQAGEVRIKIL+TALCHTDAYTWSGKDPE
Sbjct: 1   MATQGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDPE 60

Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
           GLFPCILGHEAAGIVESVGEGVTEVQ GDHVIPCYQAECRECKFCKSGKTNLCGKVR AT
Sbjct: 61  GLFPCILGHEAAGIVESVGEGVTEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSAT 120

Query: 121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
           G G+MMNDRKSRFS+NGKPIYHFMGTSTFSQYTVVHDVSVAKIDP APLDKVCLLGCGVP
Sbjct: 121 GVGIMMNDRKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTAPLDKVCLLGCGVP 180

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
           TGLGAVWNTAKVEPGS VA+FGLGTVGLAVAEGAK AGASR+IGIDID KK++
Sbjct: 181 TGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYE 233

Plays a central role in formaldehyde detoxification.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

>sp|P93629|ADHX_MAIZE Alcohol dehydrogenase class-3 OS=Zea mays GN=FDH PE=2 SV=1

 Score =  450 bits (1158), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 217/231 (93%), Positives = 225/231 (97%)

Query: 3   TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL 62
           T+GQVITCKAAVA+EPNKPLVIEDVQVAPPQAGEVR+KILFTALCHTD YTWSGKDPEGL
Sbjct: 5   TQGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRVKILFTALCHTDHYTWSGKDPEGL 64

Query: 63  FPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGA 122
           FPCILGHEAAGIVESVGEGVT+VQPGDHVIPCYQAEC+ECKFCKSGKTNLCGKVR ATG 
Sbjct: 65  FPCILGHEAAGIVESVGEGVTDVQPGDHVIPCYQAECKECKFCKSGKTNLCGKVRSATGV 124

Query: 123 GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTG 182
           GVMMND KSRFS+NGKPIYHFMGTSTFSQYTVVHDVSVAKI+PQAPLDKVCLLGCGVPTG
Sbjct: 125 GVMMNDMKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCGVPTG 184

Query: 183 LGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
           LGAVWNTAKVE GS+VAVFGLGTVGLAVAEGAKAAGASRVIGIDID KKFD
Sbjct: 185 LGAVWNTAKVESGSVVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDNKKFD 235

Zea mays (taxid: 4577)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

>sp|P80572|ADHX_PEA Alcohol dehydrogenase class-3 OS=Pisum sativum PE=1 SV=1

 Score =  426 bits (1095), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 206/232 (88%), Positives = 217/232 (93%)

Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           +T+GQVITCKAAVAWEPNKPL IEDV+VAPPQA EVRI+ILFTALCHTDAYT  GKDPEG
Sbjct: 1   ATQGQVITCKAAVAWEPNKPLTIEDVEVAPPQANEVRIQILFTALCHTDAYTLGGKDPEG 60

Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           LFPCILGHEAAGIVESVGEGVT+V+PGDHVIP YQAEC ECKFCKS KTNLCGKVR ATG
Sbjct: 61  LFPCILGHEAAGIVESVGEGVTDVKPGDHVIPSYQAECGECKFCKSPKTNLCGKVRAATG 120

Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            GVMM DRKSRFS+ GKPIYHFMGTSTFSQYTVVHDVSVAKI P APLDKVCLLGCGVPT
Sbjct: 121 VGVMMADRKSRFSVKGKPIYHFMGTSTFSQYTVVHDVSVAKIHPDAPLDKVCLLGCGVPT 180

Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
           GLGAVWNTAKVEPGSIVA+FGLGTVGLAVAEGAK+AGASR+IGIDID  K+D
Sbjct: 181 GLGAVWNTAKVEPGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDSNKYD 232

Class-III ADH is remarkably ineffective in oxidizing ethanol, but it readily catalyzes the oxidation of long-chain primary alcohols and the oxidation of S-(hydroxymethyl) glutathione.

Pisum sativum (taxid: 3888)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

>sp|P79896|ADHX_SPAAU Alcohol dehydrogenase class-3 OS=Sparus aurata PE=2 SV=1

 Score =  324 bits (831), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 157/233 (67%), Positives = 186/233 (79%), Gaps = 1/233 (0%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
           M T G+VI CKAAVAWEP KPL IE+V+VAPP A EVRIK+  T +CHTDAYT SG DPE
Sbjct: 1   METAGKVIKCKAAVAWEPGKPLSIEEVEVAPPNAHEVRIKLFATGVCHTDAYTLSGSDPE 60

Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
           GLFP ILGHE AG VESVGEGVT+ +PGD VIP Y  +C ECKFCK+ KTNLC K+R   
Sbjct: 61  GLFPVILGHEGAGTVESVGEGVTKFKPGDTVIPLYVPQCGECKFCKNPKTNLCQKIRITQ 120

Query: 121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
           G G ++ D+ SRF+  GK ++HFMGTSTFS+YTVV D+S+AK++ +AP+DKVCLLGCG+ 
Sbjct: 121 GQG-LLPDKTSRFTCKGKQVFHFMGTSTFSEYTVVADISLAKVNEKAPMDKVCLLGCGIS 179

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
           TG GA  NTAKVEPGS  AVFGLG VGLAV  G K AGA+R+IGID++P KF+
Sbjct: 180 TGYGAALNTAKVEPGSTCAVFGLGAVGLAVIMGCKVAGATRIIGIDLNPAKFE 232

Class-III ADH is remarkably ineffective in oxidizing ethanol, but it readily catalyzes the oxidation of long-chain primary alcohols and the oxidation of S-(hydroxymethyl) glutathione.

Sparus aurata (taxid: 8175)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

>sp|P12711|ADHX_RAT Alcohol dehydrogenase class-3 OS=Rattus norvegicus GN=Adh5 PE=1 SV=2

 Score =  322 bits (824), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 163/229 (71%), Positives = 182/229 (79%), Gaps = 1/229 (0%)

Query: 6   QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC 65
           QVI CKAAVAWE  KPL IE+++VAPPQA EVRIKI+ TA+CHTDAYT SG DPEG FP 
Sbjct: 4   QVIRCKAAVAWEAGKPLSIEEIEVAPPQAHEVRIKIIATAVCHTDAYTLSGADPEGCFPV 63

Query: 66  ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
           ILGHE AGIVESVGEGVT+++ GD VIP Y  +C ECKFC + KTNLC K+R   G G +
Sbjct: 64  ILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG-L 122

Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
           M D  SRF+  GKPI HFMGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG GA
Sbjct: 123 MPDGTSRFTCKGKPILHFMGTSTFSEYTVVADISVAKIDPSAPLDKVCLLGCGISTGYGA 182

Query: 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
             NTAKVEPGS  AVFGLG VGLAV  G K AGASR+IGIDI+  KF +
Sbjct: 183 AVNTAKVEPGSTCAVFGLGGVGLAVIMGCKVAGASRIIGIDINKDKFAK 231

Class-III ADH is remarkably ineffective in oxidizing ethanol, but it readily catalyzes the oxidation of long-chain primary alcohols and the oxidation of S-(hydroxymethyl) glutathione.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

>sp|P00333|ADH1_MAIZE Alcohol dehydrogenase 1 OS=Zea mays GN=ADH1 PE=2 SV=1

 Score =  321 bits (823), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 155/234 (66%), Positives = 184/234 (78%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
           M+T G+VI CKAAVAWE  KPL IE+V+VAPPQA EVR+KILFT+LCHTD Y W  K   
Sbjct: 1   MATAGKVIKCKAAVAWEAGKPLSIEEVEVAPPQAMEVRVKILFTSLCHTDVYFWEAKGQT 60

Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
            +FP I GHEA GI+ESVGEGVT+V PGDHV+P +  EC+EC  CKS ++N+C  +R  T
Sbjct: 61  PVFPRIFGHEAGGIIESVGEGVTDVAPGDHVLPVFTGECKECAHCKSAESNMCDLLRINT 120

Query: 121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
             GVM+ D KSRFSINGKPIYHF+GTSTFS+YTV+H   VAKI+PQAPLDKVC+L CG  
Sbjct: 121 DRGVMIADGKSRFSINGKPIYHFVGTSTFSEYTVMHVGCVAKINPQAPLDKVCVLSCGYS 180

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           TGLGA  N AK   GS VAVFGLG VGLA AEGA+ AGASR+IG+D++P +F+ 
Sbjct: 181 TGLGASINVAKPPKGSTVAVFGLGAVGLAAAEGARIAGASRIIGVDLNPSRFEE 234

Zea mays (taxid: 4577)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|P81600|ADHH_GADMO Alcohol dehydrogenase class-3 chain H OS=Gadus morhua PE=1 SV=1

 Score =  321 bits (823), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 156/233 (66%), Positives = 186/233 (79%), Gaps = 1/233 (0%)

Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           +T GQVI CKAAVAWE  KPL +E+V+VAPP+AGEVRIK++ T +CHTDAYT SG DPEG
Sbjct: 1   ATAGQVIKCKAAVAWEAGKPLSLEEVEVAPPRAGEVRIKVVATGVCHTDAYTLSGSDPEG 60

Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
            FP ILGHE AG+VESVGEGVT+ + GD VIP Y  +C ECKFCK+ KTNLC K+R   G
Sbjct: 61  AFPVILGHEGAGLVESVGEGVTKFKAGDTVIPLYVPQCGECKFCKNPKTNLCQKIRVTQG 120

Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G +M D  SRF+  GK ++HFMGTSTFS+YTVV D+S+A +DP+APLDKVCLLGCG+ T
Sbjct: 121 RG-LMPDNTSRFTCKGKQLFHFMGTSTFSEYTVVADISLANVDPKAPLDKVCLLGCGIST 179

Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           G GA  NTAKVEPGS  AVFGLG VGLA   G K AGA+R+IG+DI+P+KF +
Sbjct: 180 GYGAALNTAKVEPGSTCAVFGLGAVGLAAIMGCKVAGATRIIGVDINPEKFGK 232

Class-III ADH is remarkably ineffective in oxidizing ethanol, but it readily catalyzes the oxidation of long-chain primary alcohols and the oxidation of S-(hydroxymethyl) glutathione.

Gadus morhua (taxid: 8049)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

>sp|P06525|ADH1_ARATH Alcohol dehydrogenase class-P OS=Arabidopsis thaliana GN=ADH1 PE=1 SV=2

 Score =  321 bits (822), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 153/234 (65%), Positives = 183/234 (78%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
           MST GQ+I CKAAVAWE  KPLVIE+V+VAPPQ  EVRIKILFT+LCHTD Y W  K   
Sbjct: 1   MSTTGQIIRCKAAVAWEAGKPLVIEEVEVAPPQKHEVRIKILFTSLCHTDVYFWEAKGQT 60

Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
            LFP I GHEA GIVESVGEGVT++QPGDHV+P +  EC EC+ C S ++N+C  +R  T
Sbjct: 61  PLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPIFTGECGECRHCHSEESNMCDLLRINT 120

Query: 121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
             G M++D +SRFSINGKPIYHF+GTSTFS+YTVVH   VAKI+P APLDKVC++ CG+ 
Sbjct: 121 ERGGMIHDGESRFSINGKPIYHFLGTSTFSEYTVVHSGQVAKINPDAPLDKVCIVSCGLS 180

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           TGLGA  N AK + G  VA+FGLG VGL  AEGA+ AGASR+IG+D + K+FD+
Sbjct: 181 TGLGATLNVAKPKKGQSVAIFGLGAVGLGAAEGARIAGASRIIGVDFNSKRFDQ 234

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	246
353703786	379	alcohol dehydrogenase class III [Solanum	0.951	0.617	0.948	1e-128
433286663	396	Chain A, Crystal Structure Of S-nitrosog	0.947	0.588	0.948	1e-128
449487339	349	PREDICTED: alcohol dehydrogenase class-3	0.947	0.667	0.944	1e-126
449445644	379	PREDICTED: alcohol dehydrogenase class-3	0.947	0.614	0.944	1e-126
429840534	378	alcohol dehydrogenase 2 [Diospyros kaki]	0.947	0.616	0.939	1e-126
255585914	379	alcohol dehydrogenase, putative [Ricinus	0.951	0.617	0.935	1e-126
224065517	379	glutathione-dependent formaldehyde dehyd	0.951	0.617	0.931	1e-126
82400134	379	alcohol dehydrogenase class III-like pro	0.951	0.617	0.927	1e-126
238069187	374	S-nitrosoglutathione reductase [Brassica	0.947	0.622	0.931	1e-125
148886774	381	RecName: Full=Alcohol dehydrogenase clas	0.943	0.608	0.935	1e-125

>gi|353703786|ref|NP_001238796.1| alcohol dehydrogenase class III [Solanum lycopersicum] gi|283825505|gb|ADB43258.1| alcohol dehydrogenase class III [Solanum lycopersicum] gi|322719690|gb|ADX07743.1| alcohol dehydrogenase class III [Solanum habrochaites] gi|322719692|gb|ADX07744.1| alcohol dehydrogenase class III [Solanum chmielewskii]

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 222/234 (94%), Positives = 230/234 (98%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
           M+T+GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVR+K+L+TALCHTDAYTWSGKDPE
Sbjct: 1   MATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKVLYTALCHTDAYTWSGKDPE 60

Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
           GLFPC+LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR AT
Sbjct: 61  GLFPCVLGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAAT 120

Query: 121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
           G GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP APL+KVCLLGCGVP
Sbjct: 121 GVGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPVAPLEKVCLLGCGVP 180

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASR+IGIDID KKFDR
Sbjct: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRIIGIDIDSKKFDR 234

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|433286663|pdb|4DL9|A Chain A, Crystal Structure Of S-nitrosoglutathione Reductase From Tomato (solanum Lycopersicum) In Complex With Nad+ gi|433286664|pdb|4DL9|B Chain B, Crystal Structure Of S-nitrosoglutathione Reductase From Tomato (solanum Lycopersicum) In Complex With Nad+ gi|433286665|pdb|4DLA|A Chain A, Crystal Structure Of S-nitrosoglutathione Reductase Apoenzyme From Tomato (solanum Lycopersicum) gi|433286666|pdb|4DLA|B Chain B, Crystal Structure Of S-nitrosoglutathione Reductase Apoenzyme From Tomato (solanum Lycopersicum) gi|433286667|pdb|4DLB|A Chain A, Structure Of S-nitrosoglutathione Reductase From Tomato (solanum Lycopersicum) Crystallized In Presence Of Nadh And Glutathione gi|433286668|pdb|4DLB|B Chain B, Structure Of S-nitrosoglutathione Reductase From Tomato (solanum Lycopersicum) Crystallized In Presence Of Nadh And Glutathione

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 221/233 (94%), Positives = 229/233 (98%)

Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           +T+GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVR+K+L+TALCHTDAYTWSGKDPEG
Sbjct: 19  ATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKVLYTALCHTDAYTWSGKDPEG 78

Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           LFPC+LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR ATG
Sbjct: 79  LFPCVLGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAATG 138

Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP APL+KVCLLGCGVPT
Sbjct: 139 VGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPVAPLEKVCLLGCGVPT 198

Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASR+IGIDID KKFDR
Sbjct: 199 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRIIGIDIDSKKFDR 251

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449487339|ref|XP_004157577.1| PREDICTED: alcohol dehydrogenase class-3-like [Cucumis sativus]

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 220/233 (94%), Positives = 229/233 (98%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
           M+T+GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVR+KIL+TALCHTDAYTWSGKDPE
Sbjct: 1   MATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKILYTALCHTDAYTWSGKDPE 60

Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
           GLFPCILGHEAAGIVESVGEGVT+VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT
Sbjct: 61  GLFPCILGHEAAGIVESVGEGVTDVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120

Query: 121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
           G GVMM+DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP APLDKVCLLGCGVP
Sbjct: 121 GVGVMMSDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTAPLDKVCLLGCGVP 180

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
           TGLGAVWNTAKVEPGS VA+FGLGTVGLAVAEGAKAAGASR+IGIDID KKF+
Sbjct: 181 TGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKAAGASRIIGIDIDNKKFE 233

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445644|ref|XP_004140582.1| PREDICTED: alcohol dehydrogenase class-3-like [Cucumis sativus]

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 220/233 (94%), Positives = 229/233 (98%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
           M+T+GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVR+KIL+TALCHTDAYTWSGKDPE
Sbjct: 1   MATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKILYTALCHTDAYTWSGKDPE 60

Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
           GLFPCILGHEAAGIVESVGEGVT+VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT
Sbjct: 61  GLFPCILGHEAAGIVESVGEGVTDVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120

Query: 121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
           G GVMM+DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP APLDKVCLLGCGVP
Sbjct: 121 GVGVMMSDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTAPLDKVCLLGCGVP 180

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
           TGLGAVWNTAKVEPGS VA+FGLGTVGLAVAEGAKAAGASR+IGIDID KKF+
Sbjct: 181 TGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKAAGASRIIGIDIDNKKFE 233

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|429840534|gb|AGA15794.1| alcohol dehydrogenase 2 [Diospyros kaki]

 Score =  456 bits (1172), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 219/233 (93%), Positives = 226/233 (96%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
           M+T+GQVITCKAAVAWEPNKPL IEDVQVAPPQAGEVRI+ILFTALCHTDAYTWSGKDPE
Sbjct: 1   MATQGQVITCKAAVAWEPNKPLAIEDVQVAPPQAGEVRIQILFTALCHTDAYTWSGKDPE 60

Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
           GLFPCILGHEAAGIVESVGEGVTEV PGDHVIPCYQAECRECKFCKSGKTNLCGKVR AT
Sbjct: 61  GLFPCILGHEAAGIVESVGEGVTEVHPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAAT 120

Query: 121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
           G GVMMNDRKSRFSING PIYHFMGTSTFSQYTVVHDVSVAKIDP APL+KVCLLGCGVP
Sbjct: 121 GVGVMMNDRKSRFSINGTPIYHFMGTSTFSQYTVVHDVSVAKIDPIAPLEKVCLLGCGVP 180

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
           TGLGAVWNTAKVEPGSIVA+FGLGTVGLAVAEGAK+AGASR+IGIDID KKFD
Sbjct: 181 TGLGAVWNTAKVEPGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDSKKFD 233

Source: Diospyros kaki

Species: Diospyros kaki

Genus: Diospyros

Family: Ebenaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585914|ref|XP_002533630.1| alcohol dehydrogenase, putative [Ricinus communis] gi|223526488|gb|EEF28759.1| alcohol dehydrogenase, putative [Ricinus communis]

 Score =  456 bits (1172), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 219/234 (93%), Positives = 229/234 (97%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
           M+T+GQVI CKAAVA+EPNKPLVIEDVQVAPPQAGEVR++ILFTALCHTDAYTWSGKDPE
Sbjct: 1   MATQGQVIICKAAVAYEPNKPLVIEDVQVAPPQAGEVRVQILFTALCHTDAYTWSGKDPE 60

Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
           GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECR+CKFCKSGKTNLCGKVR AT
Sbjct: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRDCKFCKSGKTNLCGKVRAAT 120

Query: 121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
           G GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP+APL+KVCLLGCGVP
Sbjct: 121 GVGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPKAPLEKVCLLGCGVP 180

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           TGLGAVWNTAKVE GSIVAVFGLGTVGLAVAEGAKAAGASR+IGIDID KK+DR
Sbjct: 181 TGLGAVWNTAKVEAGSIVAVFGLGTVGLAVAEGAKAAGASRIIGIDIDSKKYDR 234

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065517|ref|XP_002301836.1| glutathione-dependent formaldehyde dehydrogenase [Populus trichocarpa] gi|222843562|gb|EEE81109.1| glutathione-dependent formaldehyde dehydrogenase [Populus trichocarpa]

 Score =  456 bits (1172), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 218/234 (93%), Positives = 227/234 (97%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
           M+T+GQVITC+AAVAWE NKPLVIE+VQVAPPQAGEVR+KILF ALCHTDAYTWSGKDPE
Sbjct: 1   MATQGQVITCRAAVAWEANKPLVIEEVQVAPPQAGEVRVKILFAALCHTDAYTWSGKDPE 60

Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
           GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR AT
Sbjct: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRTAT 120

Query: 121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
           G GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP+APL+KVCLLGCGVP
Sbjct: 121 GVGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPKAPLEKVCLLGCGVP 180

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           TGLGAVWNTAKVE GSIVA+FGLGTVGLAVAEGAK AGASR+IGIDID KKFDR
Sbjct: 181 TGLGAVWNTAKVEAGSIVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKFDR 234

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|82400134|gb|ABB72806.1| alcohol dehydrogenase class III-like protein [Solanum tuberosum]

 Score =  455 bits (1170), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 217/234 (92%), Positives = 227/234 (97%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
           M+T+GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVR+K+L+TALCHTDAYTWSGKDPE
Sbjct: 1   MATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKVLYTALCHTDAYTWSGKDPE 60

Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
           GLFP +LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR AT
Sbjct: 61  GLFPSVLGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAAT 120

Query: 121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
           G GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD SVA+IDP APL+KVCLLGC VP
Sbjct: 121 GVGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDGSVARIDPAAPLEKVCLLGCWVP 180

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           TGLGAVWNTAKVEPGSIVA+FGLGTVGLAVAEGAKAAGASR+IGIDID KKFDR
Sbjct: 181 TGLGAVWNTAKVEPGSIVAIFGLGTVGLAVAEGAKAAGASRIIGIDIDSKKFDR 234

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238069187|gb|ACR40091.1| S-nitrosoglutathione reductase [Brassica juncea]

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 217/233 (93%), Positives = 228/233 (97%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
           M+T+GQVITCKAAVA+EPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE
Sbjct: 1   MATQGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60

Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
           GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR AT
Sbjct: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRSAT 120

Query: 121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
           G GVMM+DRKSRFS+NGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL+KVCLLGCGVP
Sbjct: 121 GVGVMMSDRKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLEKVCLLGCGVP 180

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
           TGLGAVWNTAKVEPGS VA+FGLGTVGLAVAEGAK AGA+R+IGIDID KK++
Sbjct: 181 TGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGATRIIGIDIDSKKYE 233

Source: Brassica juncea

Species: Brassica juncea

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148886774|sp|A2XAZ3.1|ADHX_ORYSI RecName: Full=Alcohol dehydrogenase class-3; AltName: Full=Alcohol dehydrogenase class-III; AltName: Full=Glutathione-dependent formaldehyde dehydrogenase; Short=FALDH; Short=FDH; Short=GSH-FDH; AltName: Full=S-(hydroxymethyl)glutathione dehydrogenase gi|125541608|gb|EAY88003.1| hypothetical protein OsI_09425 [Oryza sativa Indica Group]

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 217/232 (93%), Positives = 224/232 (96%)

Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST+GQVITCKAAVAWE NKP+ IEDVQVAPPQAGEVR+KILFTALCHTD YTWSGKDPEG
Sbjct: 4   STQGQVITCKAAVAWEANKPMTIEDVQVAPPQAGEVRVKILFTALCHTDHYTWSGKDPEG 63

Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR ATG
Sbjct: 64  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAATG 123

Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI+PQAPLDKVCLLGCGV T
Sbjct: 124 VGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCGVST 183

Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
           GLGAVWNTAKVE GSIVA+FGLGTVGLAVAEGAK+AGASR+IGIDID KKFD
Sbjct: 184 GLGAVWNTAKVEAGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDSKKFD 235

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	246
RGD|2292706	374	Adh5 "alcohol dehydrogenase 5	0.918	0.604	0.678	6.2e-78
UNIPROTKB|P12711	374	Adh5 "Alcohol dehydrogenase cl	0.918	0.604	0.678	6.2e-78
ZFIN|ZDB-GENE-011003-1	376	adh5 "alcohol dehydrogenase 5"	0.943	0.617	0.635	1.6e-77
DICTYBASE|DDB_G0281865	379	adh5 "alcohol dehydrogenase, c	0.951	0.617	0.634	2.1e-77
MGI|MGI:87929	374	Adh5 "alcohol dehydrogenase 5	0.967	0.636	0.639	2.1e-77
UNIPROTKB|F1NI89	370	ADH5 "Uncharacterized protein"	0.914	0.608	0.672	4.3e-77
UNIPROTKB|F1NKS5	374	ADH5 "Uncharacterized protein"	0.914	0.601	0.672	4.3e-77
UNIPROTKB|F1NKS6	362	ADH5 "Uncharacterized protein"	0.914	0.621	0.672	4.3e-77
UNIPROTKB|F1PLM5	376	F1PLM5 "Uncharacterized protei	0.926	0.606	0.663	9e-77
UNIPROTKB|J9PA83	374	ADH5 "Uncharacterized protein"	0.926	0.609	0.663	9e-77

RGD|2292706 Adh5 "alcohol dehydrogenase 5 (class III), chi polypeptide" [Rattus norvegicus (taxid:10116)]

 Score = 784 (281.0 bits), Expect = 6.2e-78, P = 6.2e-78
 Identities = 154/227 (67%), Positives = 172/227 (75%)

Query:     6 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC 65
             QVI CKAAVAWE  KPL IE+++VAPPQA EVRIKI+ TA+CHTDAYT SG DPEG FP 
Sbjct:     4 QVIRCKAAVAWEAGKPLSIEEIEVAPPQAHEVRIKIIATAVCHTDAYTLSGADPEGCFPV 63

Query:    66 ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
             ILGHE AGIVESVGEGVT+++ GD VIP Y  +C ECKFC + KTNLC K+R   G G +
Sbjct:    64 ILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG-L 122

Query:   126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
             M D  SRF+  GKPI HFMGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG GA
Sbjct:   123 MPDGTSRFTCKGKPILHFMGTSTFSEYTVVADISVAKIDPSAPLDKVCLLGCGISTGYGA 182

Query:   186 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKF 232
               NTAKVEPGS  AVFGLG V             SR+IGIDI+  KF
Sbjct:   183 AVNTAKVEPGSTCAVFGLGGVGLAVIMGCKVAGASRIIGIDINKDKF 229

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001523 "retinoid metabolic process" evidence=IEA;ISO

GO:0003016 "respiratory system process" evidence=IEA;ISO

GO:0004022 "alcohol dehydrogenase (NAD) activity" evidence=IEA;ISO;IDA

GO:0005504 "fatty acid binding" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0006068 "ethanol catabolic process" evidence=IDA

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0007568 "aging" evidence=IEP

GO:0008270 "zinc ion binding" evidence=IEA;ISO

GO:0018119 "peptidyl-cysteine S-nitrosylation" evidence=IEA;ISO

GO:0018467 "formaldehyde dehydrogenase activity" evidence=IEA;ISO

GO:0032496 "response to lipopolysaccharide" evidence=IEA;ISO

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0045777 "positive regulation of blood pressure" evidence=IEA;ISO

GO:0046294 "formaldehyde catabolic process" evidence=IEA;ISO

GO:0051409 "response to nitrosative stress" evidence=IEA;ISO

GO:0051775 "response to redox state" evidence=IEA;ISO

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IEA;ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

UNIPROTKB|P12711 Adh5 "Alcohol dehydrogenase class-3" [Rattus norvegicus (taxid:10116)]

 Score = 784 (281.0 bits), Expect = 6.2e-78, P = 6.2e-78
 Identities = 154/227 (67%), Positives = 172/227 (75%)

Query:     6 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC 65
             QVI CKAAVAWE  KPL IE+++VAPPQA EVRIKI+ TA+CHTDAYT SG DPEG FP 
Sbjct:     4 QVIRCKAAVAWEAGKPLSIEEIEVAPPQAHEVRIKIIATAVCHTDAYTLSGADPEGCFPV 63

Query:    66 ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
             ILGHE AGIVESVGEGVT+++ GD VIP Y  +C ECKFC + KTNLC K+R   G G +
Sbjct:    64 ILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG-L 122

Query:   126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
             M D  SRF+  GKPI HFMGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG GA
Sbjct:   123 MPDGTSRFTCKGKPILHFMGTSTFSEYTVVADISVAKIDPSAPLDKVCLLGCGISTGYGA 182

Query:   186 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKF 232
               NTAKVEPGS  AVFGLG V             SR+IGIDI+  KF
Sbjct:   183 AVNTAKVEPGSTCAVFGLGGVGLAVIMGCKVAGASRIIGIDINKDKF 229

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001523 "retinoid metabolic process" evidence=IEA

GO:0003016 "respiratory system process" evidence=IEA

GO:0005504 "fatty acid binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0018119 "peptidyl-cysteine S-nitrosylation" evidence=IEA

GO:0018467 "formaldehyde dehydrogenase activity" evidence=IEA

GO:0032496 "response to lipopolysaccharide" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0045777 "positive regulation of blood pressure" evidence=IEA

GO:0046294 "formaldehyde catabolic process" evidence=IEA

GO:0051409 "response to nitrosative stress" evidence=IEA

GO:0051775 "response to redox state" evidence=IEA

ZFIN|ZDB-GENE-011003-1 adh5 "alcohol dehydrogenase 5" [Danio rerio (taxid:7955)]

 Score = 780 (279.6 bits), Expect = 1.6e-77, P = 1.6e-77
 Identities = 148/233 (63%), Positives = 174/233 (74%)

Query:     1 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
             M T G+VI CKAAVAWE  KPL IE+V+VAPP+A EVR+KI  T +CHTDAYT SG DPE
Sbjct:     1 MDTTGKVIKCKAAVAWEAGKPLTIEEVEVAPPKAHEVRVKIHATGVCHTDAYTLSGSDPE 60

Query:    61 GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
             GLFP ILGHE AG VESVGEGVT+ +PGD VIP Y  +C ECKFCK+ KTNLC K+R   
Sbjct:    61 GLFPVILGHEGAGTVESVGEGVTKFKPGDTVIPLYVPQCGECKFCKNPKTNLCQKIRVTQ 120

Query:   121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
             G G +M D  SRF+  GK ++HFMGTSTFS+YTVV ++S+AK+D  APLDKVCLLGCG+ 
Sbjct:   121 GQG-LMPDNTSRFTCKGKQLFHFMGTSTFSEYTVVAEISLAKVDEHAPLDKVCLLGCGIS 179

Query:   181 TGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFD 233
             TG GA  NTAKVE GS  AVFGLG V             +R+IGID++P KF+
Sbjct:   180 TGYGAAINTAKVEAGSTCAVFGLGAVGLAVVMGCKSAGATRIIGIDVNPDKFE 232

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IEA

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

DICTYBASE|DDB_G0281865 adh5 "alcohol dehydrogenase, class 3" [Dictyostelium discoideum (taxid:44689)]

 Score = 779 (279.3 bits), Expect = 2.1e-77, P = 2.1e-77
 Identities = 149/235 (63%), Positives = 169/235 (71%)

Query:     1 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
             MSTEG+VITCKAAVAWE  KPLVIED++V PPQ GEVRIKIL+T +CHTD+YT SG DPE
Sbjct:     1 MSTEGKVITCKAAVAWEAKKPLVIEDIEVQPPQKGEVRIKILYTGVCHTDSYTLSGSDPE 60

Query:    61 GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
             G+FPCILGHE  GIVES+GEGVT V+ GDHVIP Y  EC  CKFC S KTNLC K+R   
Sbjct:    61 GIFPCILGHEGGGIVESIGEGVTSVKVGDHVIPLYIPECGTCKFCTSNKTNLCSKIRITQ 120

Query:   121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
             G G  M D  +RF   GK I+HFMGTSTFSQYTV+ ++S   +   APLDKVCLLGCG+ 
Sbjct:   121 GKG-QMPDGTTRFKCKGKEIFHFMGTSTFSQYTVLPEISCCVVREDAPLDKVCLLGCGIT 179

Query:   181 TGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRG 235
             TG GA   TAKVE GS VA+FGLG V              R+IGID +  KF  G
Sbjct:   180 TGFGAAKITAKVEEGSTVAIFGLGAVGLSVAQGAVDCGAKRIIGIDNNETKFGPG 234

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004022 "alcohol dehydrogenase (NAD) activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0004024 "alcohol dehydrogenase activity, zinc-dependent" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:87929 Adh5 "alcohol dehydrogenase 5 (class III), chi polypeptide" [Mus musculus (taxid:10090)]

 Score = 779 (279.3 bits), Expect = 2.1e-77, P = 2.1e-77
 Identities = 156/244 (63%), Positives = 179/244 (73%)

Query:     6 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC 65
             QVI CKAAVAWE  KPL IE+++VAPP+A EVRIKIL TA+CHTDAYT SG DPEG FP 
Sbjct:     4 QVIRCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKILATAVCHTDAYTLSGADPEGCFPV 63

Query:    66 ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
             ILGHE AGIVESVGEGVT+++ GD VIP Y  +C ECKFC + KTNLC K+R   G G +
Sbjct:    64 ILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG-L 122

Query:   126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
             M D  SRF+  GK ++HFMGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG GA
Sbjct:   123 MPDGTSRFTCKGKSVFHFMGTSTFSEYTVVADISVAKIDPSAPLDKVCLLGCGISTGYGA 182

Query:   186 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR----GMS-CVS 240
               NTAKVEPGS  AVFGLG V             SR+IGIDI+  KF +    G S C+S
Sbjct:   183 AVNTAKVEPGSTCAVFGLGGVGLAVIMGCKVAGASRIIGIDINKDKFAKAKEFGASECIS 242

Query:   241 SSKY 244
                +
Sbjct:   243 PQDF 246

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001523 "retinoid metabolic process" evidence=IMP

GO:0003016 "respiratory system process" evidence=IMP

GO:0004022 "alcohol dehydrogenase (NAD) activity" evidence=ISO;IDA

GO:0005504 "fatty acid binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0006068 "ethanol catabolic process" evidence=ISO

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0008270 "zinc ion binding" evidence=ISO

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0018119 "peptidyl-cysteine S-nitrosylation" evidence=IMP

GO:0018467 "formaldehyde dehydrogenase activity" evidence=ISO

GO:0032496 "response to lipopolysaccharide" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0045777 "positive regulation of blood pressure" evidence=IMP

GO:0046294 "formaldehyde catabolic process" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

GO:0051409 "response to nitrosative stress" evidence=IMP

GO:0051775 "response to redox state" evidence=ISO

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IMP

GO:0055114 "oxidation-reduction process" evidence=ISO;IMP;IDA

UNIPROTKB|F1NI89 ADH5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 152/226 (67%), Positives = 170/226 (75%)

Query:     7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCI 66
             VI CKAAVAWE  KPL IE+V+VAPP+A EVRIKI+ TALCHTDAYT SG DPEG FP I
Sbjct:     1 VIKCKAAVAWEAGKPLSIEEVEVAPPKAHEVRIKIVATALCHTDAYTLSGADPEGCFPVI 60

Query:    67 LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
             LGHE AGIVESVGEGVT+V+PGD VIP Y  +C ECK+CK+ KTNLC K+R   G G +M
Sbjct:    61 LGHEGAGIVESVGEGVTKVKPGDTVIPLYIPQCGECKYCKNPKTNLCQKIRFTQGKG-LM 119

Query:   127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
              D   RF+  GK IYHFMGTSTFS+YTVV D+SVAKIDP AP DKVCLLGCG+ TG GA 
Sbjct:   120 PDGTIRFTCKGKQIYHFMGTSTFSEYTVVADISVAKIDPAAPFDKVCLLGCGISTGYGAA 179

Query:   187 WNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKF 232
              NTAKVEPGS  AVFGLG V             SR+IGIDI+   +
Sbjct:   180 VNTAKVEPGSTCAVFGLGGVGLATVMGCKAAGASRIIGIDINKNTY 225

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IEA

UNIPROTKB|F1NKS5 ADH5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 152/226 (67%), Positives = 170/226 (75%)

Query:     7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCI 66
             VI CKAAVAWE  KPL IE+V+VAPP+A EVRIKI+ TALCHTDAYT SG DPEG FP I
Sbjct:     5 VIKCKAAVAWEAGKPLSIEEVEVAPPKAHEVRIKIVATALCHTDAYTLSGADPEGCFPVI 64

Query:    67 LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
             LGHE AGIVESVGEGVT+V+PGD VIP Y  +C ECK+CK+ KTNLC K+R   G G +M
Sbjct:    65 LGHEGAGIVESVGEGVTKVKPGDTVIPLYIPQCGECKYCKNPKTNLCQKIRVTQGKG-LM 123

Query:   127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
              D   RF+  GK IYHFMGTSTFS+YTVV D+SVAKIDP AP DKVCLLGCG+ TG GA 
Sbjct:   124 PDGTIRFTCKGKQIYHFMGTSTFSEYTVVADISVAKIDPAAPFDKVCLLGCGISTGYGAA 183

Query:   187 WNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKF 232
              NTAKVEPGS  AVFGLG V             SR+IGIDI+   +
Sbjct:   184 VNTAKVEPGSTCAVFGLGGVGLATVMGCKAAGASRIIGIDINKNTY 229

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0001523 "retinoid metabolic process" evidence=IEA

GO:0003016 "respiratory system process" evidence=IEA

GO:0004022 "alcohol dehydrogenase (NAD) activity" evidence=IEA

GO:0005504 "fatty acid binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0018119 "peptidyl-cysteine S-nitrosylation" evidence=IEA

GO:0018467 "formaldehyde dehydrogenase activity" evidence=IEA

GO:0032496 "response to lipopolysaccharide" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0045777 "positive regulation of blood pressure" evidence=IEA

GO:0046294 "formaldehyde catabolic process" evidence=IEA

GO:0051409 "response to nitrosative stress" evidence=IEA

GO:0051775 "response to redox state" evidence=IEA

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IEA

UNIPROTKB|F1NKS6 ADH5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 152/226 (67%), Positives = 170/226 (75%)

Query:     7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCI 66
             VI CKAAVAWE  KPL IE+V+VAPP+A EVRIKI+ TALCHTDAYT SG DPEG FP I
Sbjct:     1 VIKCKAAVAWEAGKPLSIEEVEVAPPKAHEVRIKIVATALCHTDAYTLSGADPEGCFPVI 60

Query:    67 LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
             LGHE AGIVESVGEGVT+V+PGD VIP Y  +C ECK+CK+ KTNLC K+R   G G +M
Sbjct:    61 LGHEGAGIVESVGEGVTKVKPGDTVIPLYIPQCGECKYCKNPKTNLCQKIRFTQGKG-LM 119

Query:   127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
              D   RF+  GK IYHFMGTSTFS+YTVV D+SVAKIDP AP DKVCLLGCG+ TG GA 
Sbjct:   120 PDGTIRFTCKGKQIYHFMGTSTFSEYTVVADISVAKIDPAAPFDKVCLLGCGISTGYGAA 179

Query:   187 WNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKF 232
              NTAKVEPGS  AVFGLG V             SR+IGIDI+   +
Sbjct:   180 VNTAKVEPGSTCAVFGLGGVGLATVMGCKAAGASRIIGIDINKNTY 225

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IEA

UNIPROTKB|F1PLM5 F1PLM5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
 Identities = 152/229 (66%), Positives = 172/229 (75%)

Query:     6 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC 65
             QVI CKAAVAWE  KPL IE+V+VAPP+A EVRIKI+ TA+CHTDAYT SG DPEG FP 
Sbjct:     6 QVIKCKAAVAWEAGKPLSIEEVEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGSFPV 65

Query:    66 ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
             ILGHE AGIVESVGEGVT+++ GD VIP Y  +C ECKFC + KTNLC K+R   G G +
Sbjct:    66 ILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG-L 124

Query:   126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
             M D  SRF+  GK I H+MGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG GA
Sbjct:   125 MPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGA 184

Query:   186 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
               NTAKVEPGS  AVFGLG V             SR+IG+DI+  KF R
Sbjct:   185 ALNTAKVEPGSTCAVFGLGGVGLATIMGCKVAGASRIIGVDINKDKFSR 233

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|J9PA83 ADH5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
 Identities = 152/229 (66%), Positives = 172/229 (75%)

Query:     6 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC 65
             QVI CKAAVAWE  KPL IE+V+VAPP+A EVRIKI+ TA+CHTDAYT SG DPEG FP 
Sbjct:     4 QVIKCKAAVAWEAGKPLSIEEVEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGSFPV 63

Query:    66 ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
             ILGHE AGIVESVGEGVT+++ GD VIP Y  +C ECKFC + KTNLC K+R   G G +
Sbjct:    64 ILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG-L 122

Query:   126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
             M D  SRF+  GK I H+MGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG GA
Sbjct:   123 MPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGA 182

Query:   186 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
               NTAKVEPGS  AVFGLG V             SR+IG+DI+  KF R
Sbjct:   183 ALNTAKVEPGSTCAVFGLGGVGLATIMGCKVAGASRIIGVDINKDKFSR 231

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q96533	ADHX_ARATH	1, ., 1, ., 1, ., 2, 8, 4	0.9270	0.9471	0.6147	yes	no
P19854	ADHX_HORSE	1, ., 1, ., 1, ., 2, 8, 4	0.6855	0.9268	0.6096	yes	no
A2XAZ3	ADHX_ORYSI	1, ., 1, ., 1, ., 2, 8, 4	0.9353	0.9430	0.6089	N/A	no
P12711	ADHX_RAT	1, ., 1, ., 1, ., 2, 8, 4	0.7117	0.9268	0.6096	yes	no
O74685	FADH_PICPA	1, ., 1, ., 1, ., -	0.6017	0.9349	0.6068	yes	no
P78870	FADH1_SCHPO	1, ., 1, ., 1, ., -	0.6406	0.9349	0.6084	yes	no
P93629	ADHX_MAIZE	1, ., 1, ., 1, ., 2, 8, 4	0.9393	0.9390	0.6062	N/A	no
Q0DWH1	ADHX_ORYSJ	1, ., 1, ., 1, ., 2, 8, 4	0.9310	0.9430	0.6089	yes	no
P80572	ADHX_PEA	1, ., 1, ., 1, ., 2, 8, 4	0.8879	0.9430	0.6137	N/A	no
O19053	ADHX_RABIT	1, ., 1, ., 1, ., 2, 8, 4	0.6899	0.9268	0.6096	yes	no
Q17335	ADHX_CAEEL	1, ., 1, ., 1, ., 2, 8, 4	0.6508	0.9390	0.6015	yes	no
Q3ZC42	ADHX_BOVIN	1, ., 1, ., 1, ., 2, 8, 4	0.6899	0.9268	0.6096	yes	no
P46415	ADHX_DROME	1, ., 1, ., 1, ., 2, 8, 4	0.6724	0.9390	0.6094	yes	no
P11766	ADHX_HUMAN	1, ., 1, ., 1, ., 2, 8, 4	0.6899	0.9268	0.6096	yes	no
P28474	ADHX_MOUSE	1, ., 1, ., 1, ., 2, 8, 4	0.7030	0.9268	0.6096	yes	no
Q54TC2	ADHX_DICDI	1, ., 1, ., 1, ., 2, 8, 4	0.6680	0.9512	0.6174	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.963
4th Layer	1.1.1.1	0.946

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	246
cd08300	368	cd08300, alcohol_DH_class_III, class III alcohol d	1e-171
cd08301	369	cd08301, alcohol_DH_plants, Plant alcohol dehydrog	1e-149
cd08277	365	cd08277, liver_alcohol_DH_like, Liver alcohol dehy	1e-128
COG1062	366	COG1062, AdhC, Zn-dependent alcohol dehydrogenases	1e-124
cd08299	373	cd08299, alcohol_DH_class_I_II_IV, class I, II, IV	1e-121
TIGR02818	368	TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutat	1e-120
PLN02740	381	PLN02740, PLN02740, Alcohol dehydrogenase-like	1e-117
cd05279	365	cd05279, Zn_ADH1, Liver alcohol dehydrogenase and	1e-108
PLN02827	378	PLN02827, PLN02827, Alcohol dehydrogenase-like	3e-98
cd08279	363	cd08279, Zn_ADH_class_III, Class III alcohol dehyd	5e-96
TIGR03989	369	TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 fa	1e-72
cd08278	365	cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydro	2e-72
cd08281	371	cd08281, liver_ADH_like1, Zinc-dependent alcohol d	1e-68
TIGR03451	358	TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothi	1e-52
COG1064	339	COG1064, AdhP, Zn-dependent alcohol dehydrogenases	1e-52
cd08263	367	cd08263, Zn_ADH10, Alcohol dehydrogenases of the M	7e-52
cd05188	271	cd05188, MDR, Medium chain reductase/dehydrogenase	7e-43
cd08259	332	cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD	2e-39
COG1063	350	COG1063, Tdh, Threonine dehydrogenase and related	4e-38
cd08260	345	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MD	4e-37
cd08231	361	cd08231, MDR_TM0436_like, Hypothetical enzyme TM04	8e-37
cd08254	338	cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e	8e-35
cd08245	330	cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD	4e-34
cd05278	347	cd05278, FDH_like, Formaldehyde dehydrogenases	4e-34
cd08236	343	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog	7e-32
cd08297	341	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CA	8e-32
cd08234	334	cd08234, threonine_DH_like, L-threonine dehydrogen	9e-32
cd08261	337	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MD	2e-31
cd05285	343	cd05285, sorbitol_DH, Sorbitol dehydrogenase	1e-30
PRK13771	334	PRK13771, PRK13771, putative alcohol dehydrogenase	1e-30
cd08235	343	cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenas	4e-30
cd08239	339	cd08239, THR_DH_like, L-threonine dehydrogenase (T	5e-30
cd08233	351	cd08233, butanediol_DH_like, (2R,3R)-2,3-butanedio	9e-30
cd08283	386	cd08283, FDH_like_1, Glutathione-dependent formald	1e-28
cd05284	340	cd05284, arabinose_DH_like, D-arabinose dehydrogen	6e-28
pfam08240	108	pfam08240, ADH_N, Alcohol dehydrogenase GroES-like	7e-27
cd08298	329	cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CA	8e-27
cd08266	342	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of t	1e-26
cd05283	337	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CA	1e-26
cd08284	344	cd08284, FDH_like_2, Glutathione-dependent formald	1e-25
cd08240	350	cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexa	2e-25
cd05281	341	cd05281, TDH, Threonine dehydrogenase	6e-25
cd08258	306	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MD	1e-24
cd08286	345	cd08286, FDH_like_ADH2, formaldehyde dehydrogenase	1e-24
cd08285	351	cd08285, NADP_ADH, NADP(H)-dependent alcohol dehyd	2e-22
cd08296	333	cd08296, CAD_like, Cinnamyl alcohol dehydrogenases	3e-21
cd08282	375	cd08282, PFDH_like, Pseudomonas putida aldehyde-di	8e-21
PRK09422	338	PRK09422, PRK09422, ethanol-active dehydrogenase/a	1e-20
COG0604	326	COG0604, Qor, NADPH:quinone reductase and related	3e-19
PRK05396	341	PRK05396, tdh, L-threonine 3-dehydrogenase; Valida	1e-18
cd08265	384	cd08265, Zn_ADH3, Alcohol dehydrogenases of the MD	2e-18
cd08232	339	cd08232, idonate-5-DH, L-idonate 5-dehydrogenase	2e-18
PRK10309	347	PRK10309, PRK10309, galactitol-1-phosphate dehydro	1e-17
cd08287	345	cd08287, FDH_like_ADH3, formaldehyde dehydrogenase	1e-17
TIGR00692	340	TIGR00692, tdh, L-threonine 3-dehydrogenase	3e-17
TIGR03201	349	TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1	4e-17
PRK10083	339	PRK10083, PRK10083, putative oxidoreductase; Provi	8e-17
cd08249	339	cd08249, enoyl_reductase_like, enoyl_reductase_lik	5e-16
cd08241	323	cd08241, QOR1, Quinone oxidoreductase (QOR)	1e-15
cd08264	325	cd08264, Zn_ADH_like2, Alcohol dehydrogenases of t	2e-15
cd05289	309	cd05289, MDR_like_2, alcohol dehydrogenase and qui	1e-14
cd08268	328	cd08268, MDR2, Medium chain dehydrogenases/reducta	3e-14
cd08269	312	cd08269, Zn_ADH9, Alcohol dehydrogenases of the MD	4e-14
cd05286	320	cd05286, QOR2, Quinone oxidoreductase (QOR)	1e-13
PLN02586	360	PLN02586, PLN02586, probable cinnamyl alcohol dehy	1e-13
TIGR02819	393	TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenas	2e-13
cd08255	277	cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochloro	5e-13
cd08243	320	cd08243, quinone_oxidoreductase_like_1, Quinone ox	2e-12
PLN02702	364	PLN02702, PLN02702, L-idonate 5-dehydrogenase	4e-12
cd08272	326	cd08272, MDR6, Medium chain dehydrogenases/reducta	5e-12
cd08253	325	cd08253, zeta_crystallin, Zeta-crystallin with NAD	7e-12
cd08230	355	cd08230, glucose_DH, Glucose dehydrogenase	1e-11
cd08256	350	cd08256, Zn_ADH2, Alcohol dehydrogenases of the MD	2e-11
PLN02514	357	PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase	3e-11
cd08262	341	cd08262, Zn_ADH8, Alcohol dehydrogenases of the MD	4e-11
cd08276	336	cd08276, MDR7, Medium chain dehydrogenases/reducta	5e-11
cd05282	323	cd05282, ETR_like, 2-enoyl thioester reductase-lik	1e-10
cd08292	324	cd08292, ETR_like_2, 2-enoyl thioester reductase (	8e-10
cd08242	319	cd08242, MDR_like, Medium chain dehydrogenases/red	1e-09
PLN02178	375	PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase	4e-09
cd08267	319	cd08267, MDR1, Medium chain dehydrogenases/reducta	5e-09
TIGR03366	280	TIGR03366, HpnZ_proposed, putative phosphonate cat	7e-09
PRK10754	327	PRK10754, PRK10754, quinone oxidoreductase, NADPH-	2e-08
cd08275	337	cd08275, MDR3, Medium chain dehydrogenases/reducta	5e-08
cd05195	293	cd05195, enoyl_red, enoyl reductase of polyketide	6e-08
PRK09880	343	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Pro	1e-07
cd08252	336	cd08252, AL_MDR, Arginate lyase and other MDR fami	2e-07
cd08271	325	cd08271, MDR5, Medium chain dehydrogenases/reducta	2e-07
cd05276	323	cd05276, p53_inducible_oxidoreductase, PIG3 p53-in	4e-07
TIGR02822	329	TIGR02822, adh_fam_2, zinc-binding alcohol dehydro	7e-07
cd08250	329	cd08250, Mgc45594_like, Mgc45594 gene product and	7e-07
cd08290	341	cd08290, ETR, 2-enoyl thioester reductase (ETR)	1e-06
cd08251	303	cd08251, polyketide_synthase, polyketide synthase	3e-06
cd08246	393	cd08246, crotonyl_coA_red, crotonyl-CoA reductase	4e-06
cd08273	331	cd08273, MDR8, Medium chain dehydrogenases/reducta	2e-05
PTZ00354	334	PTZ00354, PTZ00354, alcohol dehydrogenase; Provisi	2e-05
TIGR01751	398	TIGR01751, crot-CoA-red, crotonyl-CoA reductase	3e-05
smart00829	287	smart00829, PKS_ER, Enoylreductase	4e-05
TIGR02817	336	TIGR02817, adh_fam_1, zinc-binding alcohol dehydro	6e-05
TIGR02824	325	TIGR02824, quinone_pig3, putative NAD(P)H quinone	2e-04
pfam00107	131	pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase	3e-04
TIGR03026	409	TIGR03026, NDP-sugDHase, nucleotide sugar dehydrog	0.001
cd08291	324	cd08291, ETR_like_1, 2-enoyl thioester reductase (	0.002
COG0677	436	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate de	0.002
cd05288	329	cd05288, PGDH, Prostaglandin dehydrogenases	0.003
cd05280	325	cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putativ	0.003

>gnl|CDD|176260 cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases

 Score =  476 bits (1228), Expect = e-171
 Identities = 179/242 (73%), Positives = 197/242 (81%), Gaps = 6/242 (2%)

Query: 8   ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
           ITCKAAVAWE  KPL IE+V+VAPP+AGEVRIKIL T +CHTDAYT SG DPEGLFP IL
Sbjct: 1   ITCKAAVAWEAGKPLSIEEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPEGLFPVIL 60

Query: 68  GHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMN 127
           GHE AGIVESVGEGVT V+PGDHVIP Y  EC ECKFCKSGKTNLC K+R   G G +M 
Sbjct: 61  GHEGAGIVESVGEGVTSVKPGDHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKG-LMP 119

Query: 128 DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW 187
           D  SRFS  GKPIYHFMGTSTFS+YTVV ++SVAKI+P+APLDKVCLLGCGV TG GAV 
Sbjct: 120 DGTSRFSCKGKPIYHFMGTSTFSEYTVVAEISVAKINPEAPLDKVCLLGCGVTTGYGAVL 179

Query: 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS-----CVSSS 242
           NTAKVEPGS VAVFGLG VGLAV +GAKAAGASR+IGIDI+P KF+         CV+  
Sbjct: 180 NTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNPK 239

Query: 243 KY 244
            +
Sbjct: 240 DH 241

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 368

>gnl|CDD|176261 cd08301, alcohol_DH_plants, Plant alcohol dehydrogenase

 Score =  419 bits (1079), Expect = e-149
 Identities = 162/229 (70%), Positives = 189/229 (82%)

Query: 8   ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
           ITCKAAVAWE  KPLVIE+V+VAPPQA EVRIKIL T+LCHTD Y W  K    LFP IL
Sbjct: 1   ITCKAAVAWEAGKPLVIEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQTPLFPRIL 60

Query: 68  GHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMN 127
           GHEAAGIVESVGEGVT+++PGDHV+P +  EC+EC+ CKS K+N+C  +R  T  GVM+N
Sbjct: 61  GHEAAGIVESVGEGVTDLKPGDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMIN 120

Query: 128 DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW 187
           D KSRFSINGKPIYHF+GTSTFS+YTVVH   VAKI+P+APLDKVCLL CGV TGLGA W
Sbjct: 121 DGKSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPEAPLDKVCLLSCGVSTGLGAAW 180

Query: 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM 236
           N AKV+ GS VA+FGLG VGLAVAEGA+  GASR+IG+D++P KF++  
Sbjct: 181 NVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAK 229

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 369

>gnl|CDD|176238 cd08277, liver_alcohol_DH_like, Liver alcohol dehydrogenase

 Score =  367 bits (945), Expect = e-128
 Identities = 149/229 (65%), Positives = 173/229 (75%), Gaps = 3/229 (1%)

Query: 8   ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
           I CKAAVAWE  KPLVIE+++VAPP+A EVRIK+L T++CHTD     G     LFP IL
Sbjct: 1   IKCKAAVAWEAGKPLVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEGF-KATLFPVIL 59

Query: 68  GHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMN 127
           GHE AGIVESVGEGVT ++PGD VIP +  +C EC  C+SGKTNLC K R A  +G +M 
Sbjct: 60  GHEGAGIVESVGEGVTNLKPGDKVIPLFIGQCGECSNCRSGKTNLCQKYR-ANESG-LMP 117

Query: 128 DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW 187
           D  SRF+  GK IYHF+GTSTFSQYTVV +  VAKIDP APL+ VCLLGCG  TG GA W
Sbjct: 118 DGTSRFTCKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAAPLEHVCLLGCGFSTGYGAAW 177

Query: 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM 236
           NTAKVEPGS VAVFGLG VGL+   GAK AGASR+IG+DI+  KF++  
Sbjct: 178 NTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAK 226

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|223990 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

 Score =  356 bits (916), Expect = e-124
 Identities = 141/226 (62%), Positives = 173/226 (76%), Gaps = 2/226 (0%)

Query: 8   ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
           +  +AAVA E  KPL IE+V + PP+AGEV ++I  T +CHTDA+T SG DPEG FP +L
Sbjct: 1   MKTRAAVAREAGKPLEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDDPEG-FPAVL 59

Query: 68  GHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMN 127
           GHE AGIVE+VGEGVT V+PGDHVI  +  EC +CKFC SGK NLC  +R   G G M  
Sbjct: 60  GHEGAGIVEAVGEGVTSVKPGDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMP- 118

Query: 128 DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW 187
           D  +R S NG P+YH++G STF++YTVVH++S+ KIDP APL+K CLLGCGV TG+GAV 
Sbjct: 119 DGTTRLSGNGVPVYHYLGCSTFAEYTVVHEISLVKIDPDAPLEKACLLGCGVTTGIGAVV 178

Query: 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
           NTAKVEPG  VAVFGLG VGLA  +GAKAAGA R+I +DI+P+K +
Sbjct: 179 NTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLE 224

Length = 366

>gnl|CDD|176259 cd08299, alcohol_DH_class_I_II_IV, class I, II, IV alcohol dehydrogenases

 Score =  348 bits (895), Expect = e-121
 Identities = 138/230 (60%), Positives = 169/230 (73%), Gaps = 2/230 (0%)

Query: 3   TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL 62
           T G+VI CKAAV WEP KP  IE+++VAPP+A EVRIKI+ T +C +D +  SGK     
Sbjct: 1   TAGKVIKCKAAVLWEPKKPFSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLV-TP 59

Query: 63  FPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGA 122
           FP ILGHEAAGIVESVGEGVT V+PGD VIP +  +C +C+ C + ++NLC K       
Sbjct: 60  FPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQ 119

Query: 123 GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTG 182
           G+M  D  SRF+  GKPI+HF+GTSTFS+YTVV +++VAKID  APL+KVCL+GCG  TG
Sbjct: 120 GLMQ-DGTSRFTCKGKPIHHFLGTSTFSEYTVVDEIAVAKIDAAAPLEKVCLIGCGFSTG 178

Query: 183 LGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF 232
            GA  NTAKV PGS  AVFGLG VGL+   G KAAGASR+I +DI+  KF
Sbjct: 179 YGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKF 228

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 373

>gnl|CDD|131865 TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

 Score =  346 bits (888), Expect = e-120
 Identities = 147/223 (65%), Positives = 177/223 (79%), Gaps = 1/223 (0%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           +AAVAW   +PL IE+V V  PQ GEV ++I+ T +CHTDA+T SG DPEG+FP ILGHE
Sbjct: 3   RAAVAWAAGQPLKIEEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPEGVFPVILGHE 62

Query: 71  AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRK 130
            AGIVE+VGEGVT V+ GDHVIP Y AEC ECKFC SGKTNLC  VR   G G+ M D  
Sbjct: 63  GAGIVEAVGEGVTSVKVGDHVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGL-MPDGT 121

Query: 131 SRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTA 190
           SRFS +G+PIYH+MG STFS+YTVV ++S+AKI+P APL++VCLLGCGV TG+GAV NTA
Sbjct: 122 SRFSKDGQPIYHYMGCSTFSEYTVVPEISLAKINPAAPLEEVCLLGCGVTTGIGAVLNTA 181

Query: 191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
           KVE G  VAVFGLG +GL+V +GA+ A ASR+I IDI+P KF+
Sbjct: 182 KVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFE 224

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols [Cellular processes, Detoxification, Energy metabolism, Fermentation]. Length = 368

>gnl|CDD|178341 PLN02740, PLN02740, Alcohol dehydrogenase-like

 Score =  339 bits (872), Expect = e-117
 Identities = 143/238 (60%), Positives = 184/238 (77%), Gaps = 3/238 (1%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK-DP 59
             T+G+VITCKAAVAW P +PLV+E+++V PPQ  EVRIKIL+T++CHTD   W G+ + 
Sbjct: 2   SETQGKVITCKAAVAWGPGEPLVMEEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENEA 61

Query: 60  EGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGA 119
           +  +P ILGHEAAGIVESVGEGV +++ GDHVIP +  EC +C++CK  KTNLC   R  
Sbjct: 62  QRAYPRILGHEAAGIVESVGEGVEDLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVD 121

Query: 120 TGAGVMMNDRKSRFSI--NGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGC 177
               VM+ND K+RFS   +G+PIYHF+ TSTF++YTV+    V KIDP APL K+ LL C
Sbjct: 122 PFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSACVVKIDPNAPLKKMSLLSC 181

Query: 178 GVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG 235
           GV TG+GA WNTA V+ GS VA+FGLG VGLAVAEGA+A GAS++IG+DI+P+KF++G
Sbjct: 182 GVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKG 239

Length = 381

>gnl|CDD|176182 cd05279, Zn_ADH1, Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

 Score =  316 bits (811), Expect = e-108
 Identities = 136/227 (59%), Positives = 169/227 (74%), Gaps = 2/227 (0%)

Query: 10  CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGH 69
           CKAAV WE  KPL IE+++VAPP+AGEVRIK++ T +CHTD +   GK P    P ILGH
Sbjct: 1   CKAAVLWEKGKPLSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLP-TPLPVILGH 59

Query: 70  EAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDR 129
           E AGIVES+G GVT ++PGD VIP +  +C +CK C + + NLC K RG  G G+M  D 
Sbjct: 60  EGAGIVESIGPGVTTLKPGDKVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMS-DG 118

Query: 130 KSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT 189
            SRF+  GKPI+HF+GTSTF++YTVV ++S+AKIDP APL+KVCL+GCG  TG GA  NT
Sbjct: 119 TSRFTCKGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAPLEKVCLIGCGFSTGYGAAVNT 178

Query: 190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM 236
           AKV PGS  AVFGLG VGL+V  G KAAGASR+I +DI+  KF++  
Sbjct: 179 AKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAK 225

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|215442 PLN02827, PLN02827, Alcohol dehydrogenase-like

 Score =  291 bits (746), Expect = 3e-98
 Identities = 128/230 (55%), Positives = 168/230 (73%), Gaps = 4/230 (1%)

Query: 6   QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC 65
            VITC+AAVAW   + LV+E+V+V+PPQ  E+RIK++ T+LC +D   W  +    LFP 
Sbjct: 9   NVITCRAAVAWGAGEALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQ---ALFPR 65

Query: 66  ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
           I GHEA+GIVES+GEGVTE + GDHV+  +  EC  C+ C SGK+N+C +V G    GVM
Sbjct: 66  IFGHEASGIVESIGEGVTEFEKGDHVLTVFTGECGSCRHCISGKSNMC-QVLGLERKGVM 124

Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
            +D+K+RFSI GKP+YH+   S+FS+YTVVH     K+DP APL K+CLL CGV  GLGA
Sbjct: 125 HSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAGLGA 184

Query: 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG 235
            WN A V  GS V +FGLGTVGL+VA+GAK  GAS++IG+DI+P+K ++ 
Sbjct: 185 AWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKA 234

Length = 378

>gnl|CDD|176240 cd08279, Zn_ADH_class_III, Class III alcohol dehydrogenase

 Score =  285 bits (731), Expect = 5e-96
 Identities = 108/223 (48%), Positives = 142/223 (63%), Gaps = 3/223 (1%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           +AAV  E  KPL IE+V++  P  GEV ++I    LCH+D +  +G  P  L P +LGHE
Sbjct: 2   RAAVLHEVGKPLEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLPAPL-PAVLGHE 60

Query: 71  AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRK 130
            AG+VE VG GVT V+PGDHV+  +   C  C++C  G+ NLC    GA   G  + D  
Sbjct: 61  GAGVVEEVGPGVTGVKPGDHVVLSWIPACGTCRYCSRGQPNLCD--LGAGILGGQLPDGT 118

Query: 131 SRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTA 190
            RF+ +G+P+    G  TF++YTVV + SV KID   PLD+  LLGCGV TG+GAV NTA
Sbjct: 119 RRFTADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIPLDRAALLGCGVTTGVGAVVNTA 178

Query: 191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
           +V PG  VAV G G VGL   +GA+ AGASR+I +D  P+K +
Sbjct: 179 RVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLE 221

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 363

>gnl|CDD|188504 TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 family

 Score =  225 bits (576), Expect = 1e-72
 Identities = 98/227 (43%), Positives = 138/227 (60%), Gaps = 3/227 (1%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           KAAV W P +P  +E++++  P+AGEV +K++ + LCH+D +  +G  P   +P + GHE
Sbjct: 3   KAAVLWGPGQPWEVEEIELDDPKAGEVLVKLVASGLCHSDEHLVTGDLPMPRYPILGGHE 62

Query: 71  AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG-AGVMMNDR 129
            AG+V  VG GVT V+PGDHV+  +   C  C++C +G  NLC    GA    G  ++D 
Sbjct: 63  GAGVVTKVGPGVTGVKPGDHVVLSFIPACGRCRWCSTGLQNLCD--LGAALLTGSQISDG 120

Query: 130 KSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT 189
             RF  +G+ +       TFS+YTVV + SV KID   PLDK CL+GCGVPTG G+  N 
Sbjct: 121 TYRFHADGQDVGQMCLLGTFSEYTVVPEASVVKIDDDIPLDKACLVGCGVPTGWGSAVNI 180

Query: 190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM 236
           A V PG  V V G+G VG+   +GA  AGA +VI +D    K ++ +
Sbjct: 181 ADVRPGDTVVVMGIGGVGINAVQGAAVAGARKVIAVDPVEFKREQAL 227

This model describes a clade within the family pfam00107 of zinc-binding dehydrogenases. The family pfam00107 contains class III alcohol dehydrogenases, including enzymes designated S-(hydroxymethyl)glutathione dehydrogenase and NAD/mycothiol-dependent formaldehyde dehydrogenase. Members of the current family occur only in species that contain the very small protein mycofactocin (TIGR03969), a possible cofactor precursor, and radical SAM protein TIGR03962. We name this family for Rxyl_3153, where the lone member of the family co-clusters with these markers in Rubrobacter xylanophilus [Unknown function, Enzymes of unknown specificity]. Length = 369

>gnl|CDD|176239 cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase

 Score =  224 bits (574), Expect = 2e-72
 Identities = 94/225 (41%), Positives = 128/225 (56%), Gaps = 3/225 (1%)

Query: 8   ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
           +   AAV  EP  P V+EDV++  P+  EV ++I+ T +CHTD     G  P    P +L
Sbjct: 1   MKTTAAVVREPGGPFVLEDVELDDPRPDEVLVRIVATGICHTDLVVRDGGLP-TPLPAVL 59

Query: 68  GHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMN 127
           GHE AG+VE+VG  VT ++PGDHV+  + A C EC  C SG    C        +G   +
Sbjct: 60  GHEGAGVVEAVGSAVTGLKPGDHVVLSF-ASCGECANCLSGHPAYCENFFPLNFSGRRPD 118

Query: 128 DRKSRFSINGKPIY-HFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
                   +G P++ HF G S+F+ Y VVH+ +V K+D   PL+ +  LGCG+ TG GAV
Sbjct: 119 GSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVDKDVPLELLAPLGCGIQTGAGAV 178

Query: 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
            N  K  PGS +AVFG G VGLA    AK AG + +I +DI   +
Sbjct: 179 LNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSR 223

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 365

>gnl|CDD|176241 cd08281, liver_ADH_like1, Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

 Score =  215 bits (549), Expect = 1e-68
 Identities = 100/219 (45%), Positives = 131/219 (59%), Gaps = 2/219 (0%)

Query: 20  KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVG 79
           +PLVIE+V++ PP  GEV +KI    LCH+D    +G  P  L P  LGHEAAG+V  VG
Sbjct: 19  RPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRPRPL-PMALGHEAAGVVVEVG 77

Query: 80  EGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKP 139
           EGVT+++ GDHV+  +   C  C+ C  G+  LC     A GAG +++  + R  + G  
Sbjct: 78  EGVTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTLLSGGR-RLRLRGGE 136

Query: 140 IYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVA 199
           I H +G S F++Y VV   SV KID   PL+   L GC V TG+GAV NTA V PG  VA
Sbjct: 137 INHHLGVSAFAEYAVVSRRSVVKIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVA 196

Query: 200 VFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSC 238
           V GLG VGL+   GA AAGAS+V+ +D++  K       
Sbjct: 197 VVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL 235

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to the corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 371

>gnl|CDD|132492 TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothiol dehydrogenase

 Score =  173 bits (441), Expect = 1e-52
 Identities = 91/227 (40%), Positives = 124/227 (54%), Gaps = 12/227 (5%)

Query: 9   TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTD-AYTWSGKDPEGLFPCIL 67
           T +  +A     P+ +E + V  P  GEV + I    +CHTD  Y   G + E  FP +L
Sbjct: 1   TVRGVIARSKGAPVELETIVVPDPGPGEVIVDIQACGVCHTDLHYREGGINDE--FPFLL 58

Query: 68  GHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMN 127
           GHEAAG+VE+VGEGVT+V PGD+V+  ++A C +C+ CK G+   C     AT    + +
Sbjct: 59  GHEAAGVVEAVGEGVTDVAPGDYVVLNWRAVCGQCRACKRGRPWYCFDTHNATQKMTLTD 118

Query: 128 DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW 187
                    G  +   +G   F++ T+VH     K+DP A      LLGCGV  GLGA  
Sbjct: 119 ---------GTELSPALGIGAFAEKTLVHAGQCTKVDPAADPAAAGLLGCGVMAGLGAAV 169

Query: 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           NT  V+ G  VAV G G VG A   GA  AGAS++I +DID +K + 
Sbjct: 170 NTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEW 216

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione [Cellular processes, Detoxification]. Length = 358

>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only]

 Score =  173 bits (440), Expect = 1e-52
 Identities = 79/225 (35%), Positives = 105/225 (46%), Gaps = 25/225 (11%)

Query: 8   ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
           +T KAAV  +  +PL IE+V V  P  GEV IK+    +CHTD +   G  P    P I 
Sbjct: 2   MTMKAAVLKKFGQPLEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPVPKLPLIP 61

Query: 68  GHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           GHE  G V  VGEGVT ++ GD V +      C EC++C+SG  NLC   +         
Sbjct: 62  GHEIVGTVVEVGEGVTGLKVGDRVGVGWLVISCGECEYCRSGNENLCPNQKITG------ 115

Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
                 ++ +G           +++Y VV    V KI     L +   L C   T   A+
Sbjct: 116 ------YTTDG----------GYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYRAL 159

Query: 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
              A V+PG  VAV G G +G    + AKA GA  VI I    +K
Sbjct: 160 -KKANVKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEK 202

Length = 339

>gnl|CDD|176224 cd08263, Zn_ADH10, Alcohol dehydrogenases of the MDR family

 Score =  172 bits (437), Expect = 7e-52
 Identities = 77/225 (34%), Positives = 117/225 (52%), Gaps = 6/225 (2%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           KAAV   PN PL IE++ V  P+ GE+ I++    +CH+D +   G+ P    P +LGHE
Sbjct: 2   KAAVLKGPNPPLTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLKGELP-FPPPFVLGHE 60

Query: 71  AAGIVESVGEGVT---EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMN 127
            +G V  VG  V     +  GD V+  +   C +C++C  GK NLC            + 
Sbjct: 61  ISGEVVEVGPNVENPYGLSVGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLY 120

Query: 128 DRKSR-FSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
           D  +R F ++G P+Y +      ++Y VV   ++A +       +  +LGC   T  GA+
Sbjct: 121 DGTTRLFRLDGGPVYMYSM-GGLAEYAVVPATALAPLPESLDYTESAVLGCAGFTAYGAL 179

Query: 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
            + A V PG  VAV G+G VG +  + AKA GAS +I +D+  +K
Sbjct: 180 KHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEK 224

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 367

>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  145 bits (369), Expect = 7e-43
 Identities = 60/200 (30%), Positives = 83/200 (41%), Gaps = 28/200 (14%)

Query: 36  EVRIKILFTALCHTDAYTWSGKDPEGL-FPCILGHEAAGIVESVGEGVTEVQPGDHVIPC 94
           EV +++    LC TD +   G  P     P ILGHE AG+V  VG GVT V+ GD V+  
Sbjct: 1   EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVL 60

Query: 95  YQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTV 154
               C  C+ C+                                 I        F++Y V
Sbjct: 61  PNLGCGTCELCRELCPGGG--------------------------ILGEGLDGGFAEYVV 94

Query: 155 VHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGA 214
           V   ++  +     L++  LL   + T   A+     ++PG  V V G G VGL  A+ A
Sbjct: 95  VPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPGDTVLVLGAGGVGLLAAQLA 154

Query: 215 KAAGASRVIGIDIDPKKFDR 234
           KAAGA RVI  D   +K + 
Sbjct: 155 KAAGA-RVIVTDRSDEKLEL 173

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271

>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family

 Score =  138 bits (350), Expect = 2e-39
 Identities = 80/225 (35%), Positives = 105/225 (46%), Gaps = 25/225 (11%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           KAA+  +PNKPL IE+V    P  GEV IK+    +C+ D   W G  P G +P ILGHE
Sbjct: 2   KAAILHKPNKPLQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFPRGKYPLILGHE 61

Query: 71  AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRK 130
             G VE VGEGV   +PGD VI  Y   C +C++C SG+ NLC                 
Sbjct: 62  IVGTVEEVGEGVERFKPGDRVILYYYIPCGKCEYCLSGEENLCRNRA------------- 108

Query: 131 SRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTA 190
                     Y       F++Y  V + S+ K+      +   L  C V T + A+   A
Sbjct: 109 ---------EYGEEVDGGFAEYVKVPERSLVKLPDNVSDESAALAACVVGTAVHAL-KRA 158

Query: 191 KVEPGSIVAV-FGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
            V+ G  V V    G VG+   + AKA GA RVI +   P+K   
Sbjct: 159 GVKKGDTVLVTGAGGGVGIHAIQLAKALGA-RVIAVTRSPEKLKI 202

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332

>gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

 Score =  135 bits (342), Expect = 4e-38
 Identities = 63/222 (28%), Positives = 93/222 (41%), Gaps = 19/222 (8%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFP-CILGH 69
           KAAV +     + +E+     P  G+V I++  T +C +D + + G +P       ILGH
Sbjct: 2   KAAVVYVGGGDVRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFVPPGDIILGH 61

Query: 70  EAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDR 129
           E  G V  VG  V   + GD V+      C  C++C++G+ NLC        AG+     
Sbjct: 62  EFVGEVVEVGV-VRGFKVGDRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGG-- 118

Query: 130 KSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT 189
                I+G           F++Y  V         P    ++   L   + T        
Sbjct: 119 -----IDG----------GFAEYVRVPADFNLAKLPDGIDEEAAALTEPLATAYHGHAER 163

Query: 190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
           A V PG  V V G G +GL     AK  GAS VI +D  P++
Sbjct: 164 AAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPER 205

Length = 350

>gnl|CDD|176221 cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family

 Score =  132 bits (335), Expect = 4e-37
 Identities = 70/226 (30%), Positives = 104/226 (46%), Gaps = 25/226 (11%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           +AAV  E  +PL I +V    P    V +++    +C +D + W G DP+   P + GHE
Sbjct: 2   RAAVYEEFGEPLEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPDVTLPHVPGHE 61

Query: 71  AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRK 130
            AG+V  VGE V+  + GD V   +   C  C +C++G +N+C                 
Sbjct: 62  FAGVVVEVGEDVSRWRVGDRVTVPFVLGCGTCPYCRAGDSNVCEHQV------------- 108

Query: 131 SRFSINGKPIYHFMGTSTFSQYTVVH--DVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN 188
                       F    +F++Y  V   DV++ ++           LGC   T   A+ +
Sbjct: 109 ---------QPGFTHPGSFAEYVAVPRADVNLVRLPDDVDFVTAAGLGCRFATAFRALVH 159

Query: 189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
            A+V+PG  VAV G G VGL+    A A GA RVI +DID  K + 
Sbjct: 160 QARVKPGEWVAVHGCGGVGLSAVMIASALGA-RVIAVDIDDDKLEL 204

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 345

>gnl|CDD|176193 cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

 Score =  132 bits (334), Expect = 8e-37
 Identities = 63/228 (27%), Positives = 94/228 (41%), Gaps = 24/228 (10%)

Query: 10  CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGH 69
            +AAV   P KPL I +V +   + G V +++    +C +D +T +G+ P    P ILGH
Sbjct: 1   ARAAVLTGPGKPLEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPRVPLPIILGH 60

Query: 70  EAAGIVESVGEGVTE------VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAG 123
           E  G V ++G GVT       ++ GD V     A C  C  C  G    C   +      
Sbjct: 61  EGVGRVVALGGGVTTDVAGEPLKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKK----- 115

Query: 124 VMMNDRKSRFSIN-GKPIYHFMGTSTFSQYTVVH-DVSVAKIDPQAPLDKVCLLGCGVPT 181
                    +         H  G   ++++  +    ++ ++    P +      C + T
Sbjct: 116 ---------YGHEASCDDPHLSG--GYAEHIYLPPGTAIVRVPDNVPDEVAAPANCALAT 164

Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229
            L A+     V  G  V V G G +GL     AK AGA RVI ID  P
Sbjct: 165 VLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSP 212

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 361

>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

 Score =  126 bits (319), Expect = 8e-35
 Identities = 70/216 (32%), Positives = 96/216 (44%), Gaps = 24/216 (11%)

Query: 20  KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESV 78
             LV+E+V V  P  GEV +K+    +CH+D +   G  P     P  LGHE AG V  V
Sbjct: 12  GLLVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVEV 71

Query: 79  GEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGK 138
           G GVT  + GD V       C  C  C+ G+ NLC            +N       I+G 
Sbjct: 72  GAGVTNFKVGDRVAVPAVIPCGACALCRRGRGNLC------------LNQGMPGLGIDG- 118

Query: 139 PIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIV 198
                     F++Y VV   ++  +    P  +  +    V T   AV    +V+PG  V
Sbjct: 119 ---------GFAEYIVVPARALVPVPDGVPFAQAAVATDAVLTPYHAVVRAGEVKPGETV 169

Query: 199 AVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
            V GLG +GL   + AKA GA  VI +DI  +K + 
Sbjct: 170 LVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLEL 204

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338

>gnl|CDD|176207 cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD) and related proteins

 Score =  124 bits (314), Expect = 4e-34
 Identities = 68/222 (30%), Positives = 91/222 (40%), Gaps = 25/222 (11%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           KAAV      PL  E+V V  P  GEV IKI    +CHTD +   G      +P + GHE
Sbjct: 1   KAAVVHAAGGPLEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGGSKYPLVPGHE 60

Query: 71  AAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDR 129
             G V  VG GV   + GD V +      C  C++C+ G  NLC K    TG        
Sbjct: 61  IVGEVVEVGAGVEGRKVGDRVGVGWLVGSCGRCEYCRRGLENLCQKAVN-TG-------- 111

Query: 130 KSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT 189
              ++  G           +++Y V        +    PL +   L C   T   A+   
Sbjct: 112 ---YTTQG----------GYAEYMVADAEYTVLLPDGLPLAQAAPLLCAGITVYSAL-RD 157

Query: 190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
           A   PG  VAV G+G +G    + A+A G    + I   P K
Sbjct: 158 AGPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDK 198

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes, or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 330

>gnl|CDD|176181 cd05278, FDH_like, Formaldehyde dehydrogenases

 Score =  125 bits (315), Expect = 4e-34
 Identities = 66/224 (29%), Positives = 94/224 (41%), Gaps = 28/224 (12%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           KA V   P K  + E          +  +++  T++C +D + + G  P      ILGHE
Sbjct: 2   KALVYLGPGKIGLEEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVPGAKHGMILGHE 61

Query: 71  AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRK 130
             G V  VG  V  ++PGD V       C  C+FC+ G    C                 
Sbjct: 62  FVGEVVEVGSDVKRLKPGDRVSVPCITFCGRCRFCRRGYHAHCE---------------- 105

Query: 131 SRFSINGKPIYHFMGTSTFSQYTVVH----DVSVAKIDPQAPLDKVCLLGCGVPTGL-GA 185
                NG   +         Q   V     D+++AKI    P +   +L   +PTG  GA
Sbjct: 106 -----NGLWGWKLGNRIDGGQAEYVRVPYADMNLAKIPDGLPDEDALMLSDILPTGFHGA 160

Query: 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229
               A ++PGS VAV G G VGL    GA+  GA+R+I +D +P
Sbjct: 161 E--LAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNP 202

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 347

>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases

 Score =  118 bits (299), Expect = 7e-32
 Identities = 68/233 (29%), Positives = 100/233 (42%), Gaps = 46/233 (19%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           KA V   P   L  ED+    P  GEV +K+    +C +D   + G       P +LGHE
Sbjct: 2   KALVLTGPGD-LRYEDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTGAYH-PPLVLGHE 59

Query: 71  AAGIVESVGEGVTEVQPGDHV-----IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
            +G VE VG GV ++  GD V     +PC      +C++CK G+ +LC            
Sbjct: 60  FSGTVEEVGSGVDDLAVGDRVAVNPLLPCG-----KCEYCKKGEYSLCSN---------- 104

Query: 126 MNDRKSRFSINGKPIYHFMGTS---TFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP-- 180
                          Y ++G+     F++Y  V   ++ KI      ++  ++    P  
Sbjct: 105 ---------------YDYIGSRRDGAFAEYVSVPARNLIKIPDHVDYEEAAMIE---PAA 146

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
             L AV   A +  G  V V G GT+GL   +  K  GA RVI +DID +K  
Sbjct: 147 VALHAVRL-AGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLA 198

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343

>gnl|CDD|176257 cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD)

 Score =  118 bits (299), Expect = 8e-32
 Identities = 72/227 (31%), Positives = 108/227 (47%), Gaps = 30/227 (13%)

Query: 10  CKAAVAWEPN-KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCIL 67
            KAAV  E   KP  ++DV V  P  GEV +K+  + +CHTD +   G  P +   P I 
Sbjct: 1   MKAAVVEEFGEKPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPVKPKLPLIG 60

Query: 68  GHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           GHE AG+V +VG GV+ ++ GD V +      C +C++C++G   LC        +G   
Sbjct: 61  GHEGAGVVVAVGPGVSGLKVGDRVGVKWLYDACGKCEYCRTGDETLCPN---QKNSG--- 114

Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
                 ++++G          TF++Y +     V  I      ++   L C   T   A+
Sbjct: 115 ------YTVDG----------TFAEYAIADARYVTPIPDGLSFEQAAPLLCAGVTVYKAL 158

Query: 187 WNTAKVEPGSIVAVFGL-GTVG-LAVAEGAKAAGASRVIGIDIDPKK 231
              A ++PG  V + G  G +G L V   AKA G  RVI ID+  +K
Sbjct: 159 -KKAGLKPGDWVVISGAGGGLGHLGVQY-AKAMGL-RVIAIDVGDEK 202

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase

 Score =  118 bits (298), Expect = 9e-32
 Identities = 74/231 (32%), Positives = 103/231 (44%), Gaps = 46/231 (19%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           KA V +E    L +E+V V  P   EV IK+    +C TD + + G+      P + GHE
Sbjct: 2   KALV-YEGPGELEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFGAA-PPLVPGHE 59

Query: 71  AAGIVESVGEGVTEVQPGDHV-----IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
            AG+V +VG  VT  + GD V     I C      EC +C+ G+ NLC  +   T  GV 
Sbjct: 60  FAGVVVAVGSKVTGFKVGDRVAVDPNIYCG-----ECFYCRRGRPNLCENL---TAVGVT 111

Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCL---LGCGVPTG 182
            N         G           F++Y VV    V KI      ++  L   L C     
Sbjct: 112 RN--------GG-----------FAEYVVVPAKQVYKIPDNLSFEEAALAEPLSC----- 147

Query: 183 LGAVW--NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
             AV   +   ++PG  V VFG G +GL +A+  K  GASRV   + + +K
Sbjct: 148 --AVHGLDLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEK 196

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 334

>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family

 Score =  117 bits (296), Expect = 2e-31
 Identities = 73/226 (32%), Positives = 108/226 (47%), Gaps = 33/226 (14%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           KA V  +P + L + D+    P AGEV +++    +C +D + + G++P   +P ILGHE
Sbjct: 2   KALVCEKPGR-LEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPFASYPRILGHE 60

Query: 71  AAGIVESVGEGVTEVQPGDHV--IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128
            +G V  VGEGV  ++ GD V   P     C EC  C+ G+ N C  ++      V+   
Sbjct: 61  LSGEVVEVGEGVAGLKVGDRVVVDPYI--SCGECYACRKGRPNCCENLQ------VLGVH 112

Query: 129 RKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA-VW 187
           R      +G           F++Y VV       +     LD+  L+    P  +GA   
Sbjct: 113 R------DG----------GFAEYIVV-PADALLVPEGLSLDQAALVE---PLAIGAHAV 152

Query: 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
             A V  G  V V G G +GL V + AKA GA RVI +DID ++ +
Sbjct: 153 RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLE 197

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176188 cd05285, sorbitol_DH, Sorbitol dehydrogenase

 Score =  116 bits (292), Expect = 1e-30
 Identities = 78/247 (31%), Positives = 109/247 (44%), Gaps = 75/247 (30%)

Query: 12  AAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWS-GKDPEGLF----PCI 66
           AAV   P   L +E+  +  P  GEV +++    +C +D + +  G+   G F    P +
Sbjct: 1   AAVLHGPGD-LRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRI--GDFVVKEPMV 57

Query: 67  LGHEAAGIVESVGEGVTEVQPGDHV-----IPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           LGHE+AG V +VG GVT ++ GD V     +P     CR C+FCKSG+ NLC  +R    
Sbjct: 58  LGHESAGTVVAVGSGVTHLKVGDRVAIEPGVP-----CRTCEFCKSGRYNLCPDMR---- 108

Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTS----TFSQYTVVHD----------VSV---AKID 164
                                F  T     T  +Y V H           VS+   A ++
Sbjct: 109 ---------------------FAATPPVDGTLCRY-VNHPADFCHKLPDNVSLEEGALVE 146

Query: 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIG 224
           P +    V +  C            A V PG  V VFG G +GL  A  AKA GA++V+ 
Sbjct: 147 PLS----VGVHAC----------RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVV 192

Query: 225 IDIDPKK 231
            DIDP +
Sbjct: 193 TDIDPSR 199

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 343

>gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional

 Score =  115 bits (290), Expect = 1e-30
 Identities = 66/222 (29%), Positives = 94/222 (42%), Gaps = 25/222 (11%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           KA +     +   IE+V    P   EV IK+ +  LC+ D     G  P   +P ILGHE
Sbjct: 2   KAVILPGFKQGYRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPRMKYPVILGHE 61

Query: 71  AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRK 130
             G VE VGE V   +PGD V     A    C++C+SG+   C                K
Sbjct: 62  VVGTVEEVGENVKGFKPGDRVASLLYAPDGTCEYCRSGEEAYC----------------K 105

Query: 131 SRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTA 190
           +R    G+ +  F     F++Y  V   S+ K+ P    +   ++ C        +   A
Sbjct: 106 NRLGY-GEELDGF-----FAEYAKVKVTSLVKVPPNVSDEGAVIVPCVTGMVYRGL-RRA 158

Query: 191 KVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK 231
            V+ G  V V G  G VG+   + AKA GA +VI +     K
Sbjct: 159 GVKKGETVLVTGAGGGVGIHAIQVAKALGA-KVIAVTSSESK 199

Length = 334

>gnl|CDD|176197 cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase

 Score =  114 bits (288), Expect = 4e-30
 Identities = 68/238 (28%), Positives = 99/238 (41%), Gaps = 46/238 (19%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           KAAV   PN  + +E+V V  P  GEV +K+    +C TD     G   +   P ILGHE
Sbjct: 2   KAAVLHGPND-VRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHTDLKPPRILGHE 60

Query: 71  AAGIVESVGEGVTEVQPGD-----HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
            AG +  VG+GVT  + GD       +PC      EC +C  G  N+C   +        
Sbjct: 61  IAGEIVEVGDGVTGFKVGDRVFVAPHVPCG-----ECHYCLRGNENMCPNYKKFG----- 110

Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVA-----KIDPQAPLDKVCL---LGC 177
                            + G   F++Y  V   +V      K+      ++  L   L C
Sbjct: 111 ---------------NLYDG--GFAEYVRVPAWAVKRGGVLKLPDNVSFEEAALVEPLAC 153

Query: 178 GVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG 235
            +          A ++PG  V V G G +GL  A  AKA+GA +VI  D++  + +  
Sbjct: 154 CI-----NAQRKAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFA 206

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 343

>gnl|CDD|176201 cd08239, THR_DH_like, L-threonine dehydrogenase (TDH)-like

 Score =  113 bits (286), Expect = 5e-30
 Identities = 56/214 (26%), Positives = 91/214 (42%), Gaps = 23/214 (10%)

Query: 19  NKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTW-SGKDPEGLFPCILGHEAAGIVES 77
           ++ + + +  V  P  GEV +++  + LC +D + +  G         I GHE AG+V +
Sbjct: 9   DRTVELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVA 68

Query: 78  VGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSING 137
           VG GVT  + GD V+  +   C  C+ C+ G   LC                      + 
Sbjct: 69  VGPGVTHFRVGDRVMVYHYVGCGACRNCRRGWMQLC---------------------TSK 107

Query: 138 KPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSI 197
           +  Y +      ++Y +V + ++  +          LL CG+ T   A+     V     
Sbjct: 108 RAAYGWNRDGGHAEYMLVPEKTLIPLPDDLSFADGALLLCGIGTAYHAL-RRVGVSGRDT 166

Query: 198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
           V V G G VGL     A+A GA  VIG+D  P++
Sbjct: 167 VLVVGAGPVGLGALMLARALGAEDVIGVDPSPER 200

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase

 Score =  113 bits (286), Expect = 9e-30
 Identities = 68/227 (29%), Positives = 96/227 (42%), Gaps = 44/227 (19%)

Query: 13  AVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTD--AYTWSG-----KDPEGL--- 62
           A  +   K + +E+V   P + GEV+IK+ +  +C +D   Y   G      +       
Sbjct: 3   AARYHGRKDIRVEEVPEPPVKPGEVKIKVAWCGICGSDLHEYL-DGPIFIPTEGHPHLTG 61

Query: 63  --FPCILGHEAAGIVESVGEGVTEVQPGDHVI--PCYQAECRECKFCKSGKTNLCGKVRG 118
              P  LGHE +G+V  VG GVT  + GD V+  P  +  C  C  CK G  NLC  + G
Sbjct: 62  ETAPVTLGHEFSGVVVEVGSGVTGFKVGDRVVVEPTIK--CGTCGACKRGLYNLCDSL-G 118

Query: 119 ATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCG 178
             G G             G           F++Y VV    V K+    PL++  L+   
Sbjct: 119 FIGLGGG----------GG----------GFAEYVVVPAYHVHKLPDNVPLEEAALVE-- 156

Query: 179 VPT--GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVI 223
            P      AV   +  +PG    V G G +GL      KAAGAS++I
Sbjct: 157 -PLAVAWHAV-RRSGFKPGDTALVLGAGPIGLLTILALKAAGASKII 201

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Length = 351

>gnl|CDD|176243 cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

 Score =  111 bits (279), Expect = 1e-28
 Identities = 71/224 (31%), Positives = 98/224 (43%), Gaps = 14/224 (6%)

Query: 13  AVAWEPNKPLVIEDVQVAPP---QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGH 69
           A+ W     + +E+V    P      +  +++  TA+C +D + + G  P      ILGH
Sbjct: 3   ALVWHGKGDVRVEEV--PDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPGMKKGDILGH 60

Query: 70  EAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDR 129
           E  G+VE VG  V  ++ GD V+  +   C EC +CK G  + C     +     +    
Sbjct: 61  EFMGVVEEVGPEVRNLKVGDRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAKLYGHA 120

Query: 130 KSRFSINGKPIYHFMGTSTFSQYTVVH----DVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
            +   I G    H  G     Q   V     DV   KI      +K   L   +PTG  A
Sbjct: 121 GA--GIFGYS--HLTGGYAGGQAEYVRVPFADVGPFKIPDDLSDEKALFLSDILPTGYHA 176

Query: 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229
               A+V+PG  VAV+G G VGL  A  AK  GA RVI ID  P
Sbjct: 177 A-ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVP 219

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 386

>gnl|CDD|176187 cd05284, arabinose_DH_like, D-arabinose dehydrogenase

 Score =  108 bits (272), Expect = 6e-28
 Identities = 66/229 (28%), Positives = 99/229 (43%), Gaps = 30/229 (13%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL---FPCIL 67
           KAA  +E  KPL +EDV V  P  G+V +++    +CH+D +   G     L    P  L
Sbjct: 2   KAARLYEYGKPLRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTL 61

Query: 68  GHEAAGIVESVGEGVTEVQPGDHVIPCY-QAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           GHE AG VE VG GV  ++ GD V+  +    C  C++C+ G+ N C             
Sbjct: 62  GHENAGWVEEVGSGVDGLKEGDPVV-VHPPWGCGTCRYCRRGEENYC------------E 108

Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
           N R      +G           F++Y +V    + K+       +   L     T   AV
Sbjct: 109 NARFPGIGTDG----------GFAEYLLVPSRRLVKLPRGLDPVEAAPLADAGLTAYHAV 158

Query: 187 WNTAKV-EPGSIVAVFGLGTVG-LAVAEGAKAAGASRVIGIDIDPKKFD 233
                  +PGS V V G+G +G +AV +  +A   + VI +D   +   
Sbjct: 159 KKALPYLDPGSTVVVIGVGGLGHIAV-QILRALTPATVIAVDRSEEALK 206

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 340

>gnl|CDD|219758 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain

 Score = 99.6 bits (249), Expect = 7e-27
 Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 28/133 (21%)

Query: 34  AGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIP 93
            GEV +++    +C +D + + G+ P    P ILGHE AGIVE VG GVT ++ GD V+ 
Sbjct: 1   PGEVLVRVKAAGICGSDLHIYRGEPPPVKLPLILGHEGAGIVEEVGPGVTGLKVGDRVVV 60

Query: 94  CYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTS---TFS 150
                C +C  C+ G+ NLC                         P   F+G      F+
Sbjct: 61  YPLIPCGKCAACREGRENLC-------------------------PNGKFLGVHLDGGFA 95

Query: 151 QYTVVHDVSVAKI 163
           +Y VV   ++  +
Sbjct: 96  EYVVVPARNLVPL 108

This is the catalytic domain of alcohol dehydrogenases. Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure. Length = 108

>gnl|CDD|176258 cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CAD)

 Score =  105 bits (264), Expect = 8e-27
 Identities = 65/221 (29%), Positives = 98/221 (44%), Gaps = 33/221 (14%)

Query: 11  KAAVAWEPNK----PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCI 66
           KA V  +P      PL + +V V  P  GEV IK+    +C TD +   G  P    P I
Sbjct: 2   KAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPPPKLPLI 61

Query: 67  LGHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
            GHE  G VE+VG GVT    GD V +P   + C EC++C+SG+ NLC   R  TG    
Sbjct: 62  PGHEIVGRVEAVGPGVTRFSVGDRVGVPWLGSTCGECRYCRSGRENLCDNAR-FTG---- 116

Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
                  ++++G           +++Y V  +     I      ++   L C    G  A
Sbjct: 117 -------YTVDGG----------YAEYMVADERFAYPIPEDYDDEEAAPLLCAGIIGYRA 159

Query: 186 VWNTAKVEPGSIVAVFGLGTVG-----LAVAEGAKAAGASR 221
           +   A ++PG  + ++G G        +A  +GA+    +R
Sbjct: 160 L-KLAGLKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTR 199

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 329

>gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family

 Score =  105 bits (263), Expect = 1e-26
 Identities = 62/222 (27%), Positives = 93/222 (41%), Gaps = 33/222 (14%)

Query: 19  NKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL-FPCILGHEAAGIVES 77
            + L   D+    P   EV +++   AL H D +   G     L  P ILG + AG+VE+
Sbjct: 12  PEVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHILGSDGAGVVEA 71

Query: 78  VGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSING 137
           VG GVT V+PG  V+      C  C++C +G+ NLC                 +++ I G
Sbjct: 72  VGPGVTNVKPGQRVVIYPGISCGRCEYCLAGRENLC-----------------AQYGILG 114

Query: 138 KPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT----AKVE 193
               H  G   +++Y  V   ++  I      ++        P      W+     A++ 
Sbjct: 115 ---EHVDG--GYAEYVAVPARNLLPIPDNLSFEE----AAAAPLTFLTAWHMLVTRARLR 165

Query: 194 PGSIVAVFGLGT-VGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           PG  V V G G+ VG A  + AK  GA  VI       K +R
Sbjct: 166 PGETVLVHGAGSGVGSAAIQIAKLFGA-TVIATAGSEDKLER 206

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 342

>gnl|CDD|176186 cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)

 Score =  104 bits (263), Expect = 1e-26
 Identities = 66/234 (28%), Positives = 95/234 (40%), Gaps = 28/234 (11%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           K   A + +  L     +  P    +V IKI +  +CH+D +T   +     +P + GHE
Sbjct: 1   KGYAARDASGKLEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWGPTKYPLVPGHE 60

Query: 71  AAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDR 129
             GIV +VG  VT+ + GD V + C    C  C+ CKSG+   C K              
Sbjct: 61  IVGIVVAVGSKVTKFKVGDRVGVGCQVDSCGTCEQCKSGEEQYCPKGVVTY--------- 111

Query: 130 KSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA-VWN 188
                 NGK     +    ++ + VV +  V KI           L C      G  V++
Sbjct: 112 ------NGKYPDGTITQGGYADHIVVDERFVFKIPEGLDSAAAAPLLCA-----GITVYS 160

Query: 189 ---TAKVEPGSIVAVFGLGTVG-LAVAEGAKAAGASRVIGIDIDPKKFDRGMSC 238
                 V PG  V V G+G +G LAV + AKA GA  V      P K +  +  
Sbjct: 161 PLKRNGVGPGKRVGVVGIGGLGHLAV-KFAKALGA-EVTAFSRSPSKKEDALKL 212

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176244 cd08284, FDH_like_2, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

 Score =  102 bits (256), Expect = 1e-25
 Identities = 60/217 (27%), Positives = 96/217 (44%), Gaps = 23/217 (10%)

Query: 13  AVAWEPNKPLVIEDVQV-APPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEA 71
           AV ++    + +E+V +       +  +K+   A+C +D + + G  P      +LGHE 
Sbjct: 3   AVVFKGPGDVRVEEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIPSTP-GFVLGHEF 61

Query: 72  AGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKS 131
            G V  VG  V  ++ GD V+  +   C EC +C+ G++  C K      AG        
Sbjct: 62  VGEVVEVGPEVRTLKVGDRVVSPFTIACGECFYCRRGQSGRCAKGGLFGYAG-------- 113

Query: 132 RFSINGKPIYHFMGTSTFSQYTVV--HDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT 189
             +++G            ++Y  V   D ++ K+      +   LLG  +PTG       
Sbjct: 114 SPNLDGAQ----------AEYVRVPFADGTLLKLPDGLSDEAALLLGDILPTGYFGAKR- 162

Query: 190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 226
           A+V PG  VAV G G VGL     A+  GA+RV  +D
Sbjct: 163 AQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVD 199

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 344

>gnl|CDD|176202 cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexanoate dehydrogenase

 Score =  101 bits (254), Expect = 2e-25
 Identities = 65/233 (27%), Positives = 89/233 (38%), Gaps = 34/233 (14%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSG------------KD 58
           KAA   EP KPL   ++    P   EV +K+    +CH+D + W G             D
Sbjct: 2   KAAAVVEPGKPLEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDD 61

Query: 59  PEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRG 118
                P +LGHE  G V +VG    +V+ GD V+      C EC  C +G  NLC K R 
Sbjct: 62  RGVKLPLVLGHEIVGEVVAVGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGR- 120

Query: 119 ATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCG 178
           A G                  I+   G   +++Y +V                   L C 
Sbjct: 121 ALG------------------IFQDGG---YAEYVIVPHSRYLVDPGGLDPALAATLACS 159

Query: 179 VPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
             T   AV     +     V + G G +GL      KA G + +I +DID  K
Sbjct: 160 GLTAYSAVKKLMPLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAK 212

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 350

>gnl|CDD|176184 cd05281, TDH, Threonine dehydrogenase

 Score =  100 bits (251), Expect = 6e-25
 Identities = 78/235 (33%), Positives = 104/235 (44%), Gaps = 50/235 (21%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDA--YTW-----SGKDPEGLF 63
           KA V  +      + +V V  P  GEV IK+L  ++C TD   Y W     S   P    
Sbjct: 2   KAIVKTKAGPGAELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKP---- 57

Query: 64  PCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAE----CRECKFCKSGKTNLCGKVRGA 119
           P I GHE AG V  VGEGVT V+ GD+V     AE    C +C  C++G  ++C   +  
Sbjct: 58  PLIFGHEFAGEVVEVGEGVTRVKVGDYV----SAETHIVCGKCYQCRTGNYHVCQNTK-- 111

Query: 120 TGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCL---LG 176
              GV   D       +G           F++Y VV + ++ K D   P +   +   LG
Sbjct: 112 -ILGV---DT------DG----------CFAEYVVVPEENLWKNDKDIPPEIASIQEPLG 151

Query: 177 CGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
             V T L        V  G  V + G G +GL     AKAAGAS VI  D +P +
Sbjct: 152 NAVHTVL-----AGDV-SGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYR 200

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 341

>gnl|CDD|176219 cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family

 Score = 99.3 bits (248), Expect = 1e-24
 Identities = 60/213 (28%), Positives = 90/213 (42%), Gaps = 31/213 (14%)

Query: 26  DVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEV 85
           +V    P  GEV IK+    +C +D + + G       P +LGHE +G +  VG  V   
Sbjct: 18  EVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDPVETPVVLGHEFSGTIVEVGPDVEGW 77

Query: 86  QPGDHVIPCYQAE-CRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFM 144
           + GD V+       C  C +C+ G  NLC   R   G              +G       
Sbjct: 78  KVGDRVVSETTFSTCGRCPYCRRGDYNLCPH-RKGIGTQA-----------DG------- 118

Query: 145 GTSTFSQYTVVHDVSVAKIDPQAPLDKVCL---LGCGVPTGLGAVWNTAKVEPGSIVAVF 201
               F++Y +V + S+ ++     L+   L   L   V     AV   + + PG  V VF
Sbjct: 119 ---GFAEYVLVPEESLHELPENLSLEAAALTEPLAVAV----HAVAERSGIRPGDTVVVF 171

Query: 202 GLGTVGLAVAEGAKAAGASRVI-GIDIDPKKFD 233
           G G +GL  A+ AK  GA+ V+ G + D  + D
Sbjct: 172 GPGPIGLLAAQVAKLQGATVVVVGTEKDEVRLD 204

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 306

>gnl|CDD|176246 cd08286, FDH_like_ADH2, formaldehyde dehydrogenase (FDH)-like

 Score = 99.6 bits (249), Expect = 1e-24
 Identities = 70/225 (31%), Positives = 100/225 (44%), Gaps = 33/225 (14%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQ---AGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
           KA V   P K   I       P      +  +K+L T +C TD +   G  P      IL
Sbjct: 2   KALVYHGPGK---ISWEDRPKPTIQEPTDAIVKMLKTTICGTDLHILKGDVPTVTPGRIL 58

Query: 68  GHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           GHE  G+VE VG  VT  + GD V I C  + C  C +C+ G  + C      +G  ++ 
Sbjct: 59  GHEGVGVVEEVGSAVTNFKVGDRVLISCISS-CGTCGYCRKGLYSHC-----ESGGWILG 112

Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYT-VVH-DVSVAKIDPQAPLDKVCLLGCGVPTGL- 183
           N       I+G          T ++Y  + H D S+ K+      +   +L   +PTG  
Sbjct: 113 NL------IDG----------TQAEYVRIPHADNSLYKLPEGVDEEAAVMLSDILPTGYE 156

Query: 184 GAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228
             V N  KV+PG  VA+ G G VGLA    A+    S++I +D+D
Sbjct: 157 CGVLN-GKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLD 200

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|176245 cd08285, NADP_ADH, NADP(H)-dependent alcohol dehydrogenases

 Score = 93.5 bits (233), Expect = 2e-22
 Identities = 61/233 (26%), Positives = 96/233 (41%), Gaps = 39/233 (16%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYT-WSGK--DPEGLFPCIL 67
           KA       K   IE   +      +  ++    A C +D +T W G   +  G+   IL
Sbjct: 2   KAFAMLGIGKVGWIE-KPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPGERHGM---IL 57

Query: 68  GHEAAGIVESVGEGVTEVQPGDHVI-----PCYQAECRECKFCKSGKTNLCGKVRGATGA 122
           GHEA G+VE VG  V + +PGD VI     P ++         + G  +  G        
Sbjct: 58  GHEAVGVVEEVGSEVKDFKPGDRVIVPAITPDWR-----SVAAQRGYPSQSG-------- 104

Query: 123 GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQAPLDKVCLLGCGVP 180
             M+   K     +G           F++Y  V+D   ++A +      ++  +L   + 
Sbjct: 105 -GMLGGWKFSNFKDG----------VFAEYFHVNDADANLAPLPDGLTDEQAVMLPDMMS 153

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
           TG       A ++ G  VAVFG+G VGL    GA+  GA R+I +   P + +
Sbjct: 154 TGFHGAEL-ANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVE 205

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 351

>gnl|CDD|176256 cd08296, CAD_like, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 90.4 bits (225), Expect = 3e-21
 Identities = 67/210 (31%), Positives = 97/210 (46%), Gaps = 31/210 (14%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           KA    EP  PL + +  V  P  GEV IK+    +CH+DA+   G  P   +P + GHE
Sbjct: 2   KAVQVTEPGGPLELVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPGLSYPRVPGHE 61

Query: 71  AAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLC--GKVRGATGAGVMMN 127
             G +++VGEGV+  + GD V +  +   C  C  C+ G    C  GKV G T  G    
Sbjct: 62  VVGRIDAVGEGVSRWKVGDRVGVGWHGGHCGTCDACRRGDFVHCENGKVTGVTRDG---- 117

Query: 128 DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI-DPQAPLDKVCLLGCGVPTGLGAV 186
                                +++Y +    ++A+I D     +   LL  GV T   A+
Sbjct: 118 --------------------GYAEYMLAPAEALARIPDDLDAAEAAPLLCAGV-TTFNAL 156

Query: 187 WNTAKVEPGSIVAVFGLGTVG-LAVAEGAK 215
            N+   +PG +VAV G+G +G LAV   AK
Sbjct: 157 RNS-GAKPGDLVAVQGIGGLGHLAVQYAAK 185

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADHs), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 333

>gnl|CDD|176242 cd08282, PFDH_like, Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

 Score = 89.6 bits (223), Expect = 8e-21
 Identities = 67/205 (32%), Positives = 91/205 (44%), Gaps = 29/205 (14%)

Query: 39  IKILFTALCHTDAYTWSGK--DPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQ 96
           ++I  TA+C +D + + G+     GL   +LGHEA G VE VG  V  ++ GD V+  + 
Sbjct: 30  VRITTTAICGSDLHMYRGRTGAEPGL---VLGHEAMGEVEEVGSAVESLKVGDRVVVPFN 86

Query: 97  AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQ--YTV 154
             C  C+ CK G T +C  V      G                 Y  MG     Q  Y  
Sbjct: 87  VACGRCRNCKRGLTGVCLTVNPGRAGGAYG--------------YVDMGPYGGGQAEYLR 132

Query: 155 V--HDVSVAKIDPQAP----LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGL 208
           V   D ++ K+  +       D + L     PTG   +   A V+PG  VAVFG G VGL
Sbjct: 133 VPYADFNLLKLPDRDGAKEKDDYLMLSDI-FPTGWHGL-ELAGVQPGDTVAVFGAGPVGL 190

Query: 209 AVAEGAKAAGASRVIGIDIDPKKFD 233
             A  A   GASRV  +D  P++ D
Sbjct: 191 MAAYSAILRGASRVYVVDHVPERLD 215

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 375

>gnl|CDD|181842 PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

 Score = 88.6 bits (220), Expect = 1e-20
 Identities = 68/228 (29%), Positives = 107/228 (46%), Gaps = 37/228 (16%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--DPEGLFPCILG 68
           KAAV  + +   V+ +  + P + GE  +K+ +  +CHTD +  +G   D  G    ILG
Sbjct: 2   KAAVVNKDHTGDVVVEKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFGDKTG---RILG 58

Query: 69  HEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMN 127
           HE  GIV+ VG GVT ++ GD V I  +   C  C++C +G+  LC  V+ A        
Sbjct: 59  HEGIGIVKEVGPGVTSLKVGDRVSIAWFFEGCGHCEYCTTGRETLCRSVKNAG------- 111

Query: 128 DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVA---KIDPQAPLDKVCLLGCGVPTGLG 184
                ++++G      M      Q  V  D +V     +DP       C    GV T   
Sbjct: 112 -----YTVDGG-----MAE----QCIVTADYAVKVPEGLDPAQASSITC---AGV-TTYK 153

Query: 185 AVWNTAKVEPGSIVAVFGLGTVG-LAVAEGAKAAGASRVIGIDIDPKK 231
           A+   + ++PG  +A++G G +G LA+        A +VI +DI+  K
Sbjct: 154 AI-KVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNA-KVIAVDINDDK 199

Length = 338

>gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

 Score = 84.7 bits (210), Expect = 3e-19
 Identities = 54/217 (24%), Positives = 77/217 (35%), Gaps = 50/217 (23%)

Query: 11  KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD-PEGLFPCIL 67
           KA V  E   P  L + +V    P  GEV +++    +   D     G   P    P I 
Sbjct: 2   KAVVVEEFGGPEVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIP 61

Query: 68  GHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMN 127
           G EAAG+V +VG GVT  + GD V                          G  G      
Sbjct: 62  GSEAAGVVVAVGSGVTGFKVGDRVAALGG--------------------VGRDGG----- 96

Query: 128 DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW 187
                                +++Y VV    +  +      ++   L     T   A++
Sbjct: 97  ---------------------YAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALF 135

Query: 188 NTAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVI 223
           + A ++PG  V V G  G VG A  + AKA GA+ V 
Sbjct: 136 DRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVA 172

Length = 326

>gnl|CDD|180054 PRK05396, tdh, L-threonine 3-dehydrogenase; Validated

 Score = 83.3 bits (207), Expect = 1e-18
 Identities = 66/233 (28%), Positives = 97/233 (41%), Gaps = 50/233 (21%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD-------PEGLF 63
           KA V  +    L + DV V  P   +V IK+  TA+C TD + ++  +            
Sbjct: 2   KALVKLKAEPGLWLTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPV---- 57

Query: 64  PCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAE----CRECKFCKSGKTNLCGKVRGA 119
           P ++GHE  G V  VG  VT  + GD V      E    C  C+ C++G+ +LC   R  
Sbjct: 58  PMVVGHEFVGEVVEVGSEVTGFKVGDRV----SGEGHIVCGHCRNCRAGRRHLC---RNT 110

Query: 120 TGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCL---LG 176
            G GV   +R       G           F++Y V+   +V KI    P D   +    G
Sbjct: 111 KGVGV---NR------PG----------AFAEYLVIPAFNVWKIPDDIPDDLAAIFDPFG 151

Query: 177 CGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229
             V T L   ++      G  V + G G +G+  A  AK  GA  V+  D++ 
Sbjct: 152 NAVHTALS--FDLV----GEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNE 198

Length = 341

>gnl|CDD|176226 cd08265, Zn_ADH3, Alcohol dehydrogenases of the MDR family

 Score = 82.9 bits (205), Expect = 2e-18
 Identities = 65/225 (28%), Positives = 100/225 (44%), Gaps = 38/225 (16%)

Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL--------FPCILGHEAAG 73
           L +EDV V   +  E+ I++    +C +D + +   D +G         FP ++GHE +G
Sbjct: 39  LRVEDVPVPNLKPDEILIRVKACGICGSDIHLYE-TDKDGYILYPGLTEFPVVIGHEFSG 97

Query: 74  IVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRF 133
           +VE  G+ V   + GD V       C  C+ C+SG  N C             N ++  F
Sbjct: 98  VVEKTGKNVKNFEKGDPVTAEEMMWCGMCRACRSGSPNHC------------KNLKELGF 145

Query: 134 SINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL---DKVCLLGCGV-PTGL---GAV 186
           S +G           F++Y  V+     +I+    +   DK    G  V PT +   G  
Sbjct: 146 SADG----------AFAEYIAVNARYAWEINELREIYSEDKAFEAGALVEPTSVAYNGLF 195

Query: 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
                  PG+ V V+G G +GLA    AKAAGAS+VI  +I  ++
Sbjct: 196 IRGGGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEER 240

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 384

>gnl|CDD|176194 cd08232, idonate-5-DH, L-idonate 5-dehydrogenase

 Score = 82.3 bits (204), Expect = 2e-18
 Identities = 60/223 (26%), Positives = 90/223 (40%), Gaps = 50/223 (22%)

Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLF-------PCILGHEAAGI 74
           L +E+     P  GEVR+++    +C +D + +      G F       P +LGHE +G+
Sbjct: 9   LRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQ----HGGFGTVRLREPMVLGHEVSGV 64

Query: 75  VESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFS 134
           VE+VG GVT + PG  V       C  C +C++G+ NLC  +R                 
Sbjct: 65  VEAVGPGVTGLAPGQRVAVNPSRPCGTCDYCRAGRPNLCLNMR----------------- 107

Query: 135 INGKPIYHFMGTST--------FSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP--TGLG 184
                   F+G++         F +Y VV       +     L          P    L 
Sbjct: 108 --------FLGSAMRFPHVQGGFREYLVVDASQCVPLPDGLSLR---RAALAEPLAVALH 156

Query: 185 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI 227
           AV N A    G  V V G G +G  V   A+ AGA+ ++  D+
Sbjct: 157 AV-NRAGDLAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDL 198

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|182371 PRK10309, PRK10309, galactitol-1-phosphate dehydrogenase; Provisional

 Score = 80.6 bits (199), Expect = 1e-17
 Identities = 56/204 (27%), Positives = 88/204 (43%), Gaps = 41/204 (20%)

Query: 36  EVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHV---- 91
           +V +K+  + LC +D            +P  LGHE +G VE+VG GV ++ PGD V    
Sbjct: 27  DVLVKVASSGLCGSDIPRIFKNGAH-YYPITLGHEFSGYVEAVGSGVDDLHPGDAVACVP 85

Query: 92  -IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTF- 149
            +PC+      C  C  G  +LC K                         Y F+G+    
Sbjct: 86  LLPCFT-----CPECLRGFYSLCAK-------------------------YDFIGSRRDG 115

Query: 150 --SQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVG 207
             ++Y VV   ++  +    P++    +   +  GL A ++ A+   G  V + G GT+G
Sbjct: 116 GNAEYIVVKRKNLFALPTDMPIEDGAFIE-PITVGLHA-FHLAQGCEGKNVIIIGAGTIG 173

Query: 208 LAVAEGAKAAGASRVIGIDIDPKK 231
           L   + A A GA  V  IDI+ +K
Sbjct: 174 LLAIQCAVALGAKSVTAIDINSEK 197

Length = 347

>gnl|CDD|176247 cd08287, FDH_like_ADH3, formaldehyde dehydrogenase (FDH)-like

 Score = 80.4 bits (199), Expect = 1e-17
 Identities = 64/221 (28%), Positives = 91/221 (41%), Gaps = 33/221 (14%)

Query: 11  KAAVAWEPNKPLV--IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILG 68
           +A V   P    V  + D  +  P   +  I+++ T +C +D + + G  P    P  +G
Sbjct: 2   RATVIHGPGDIRVEEVPDPVIEEP--TDAVIRVVATCVCGSDLWPYRGVSPTR-APAPIG 58

Query: 69  HEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128
           HE  G+VE VG  VT V+PGD VI  +      C FC++G T  C               
Sbjct: 59  HEFVGVVEEVGSEVTSVKPGDFVIAPFAISDGTCPFCRAGFTTSC--------------- 103

Query: 129 RKSRFSINGKPIYHFMGTSTFSQYTVVH-DVSVAKIDPQAPLDKVCL-----LGCGVPTG 182
                 ++G     F+         V   D ++ K+      D+  L     L   + TG
Sbjct: 104 ------VHGGFWGAFVDGGQGEYVRVPLADGTLVKVPGSPSDDEDLLPSLLALSDVMGTG 157

Query: 183 LGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVI 223
             A   +A V PGS V V G G VGL     AK  GA R+I
Sbjct: 158 HHAA-VSAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERII 197

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|129775 TIGR00692, tdh, L-threonine 3-dehydrogenase

 Score = 79.1 bits (195), Expect = 3e-17
 Identities = 63/212 (29%), Positives = 90/212 (42%), Gaps = 34/212 (16%)

Query: 23  VIEDVQVAPPQAGEVRIKILFTALCHTDA--YTWSGKDPEGL-FPCILGHEAAGIVESVG 79
            + +V V  P  GEV IK+L T++C TD   Y W       +  P ++GHE AG V  +G
Sbjct: 12  ELTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIG 71

Query: 80  EGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKP 139
            GV  ++ GD+V       C +C  C+ G+ ++C   +     GV   D           
Sbjct: 72  PGVEGIKVGDYVSVETHIVCGKCYACRRGQYHVC---QNTKIFGV---DT---------- 115

Query: 140 IYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCL---LGCGVPTGLGAVWNTAKVEPGS 196
                    F++Y VV   ++ K     P +   +   LG  V T L      A    G 
Sbjct: 116 ------DGCFAEYAVVPAQNIWKNPKSIPPEYATIQEPLGNAVHTVL------AGPISGK 163

Query: 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228
            V V G G +GL     AKA+GA  VI  D +
Sbjct: 164 SVLVTGAGPIGLMAIAVAKASGAYPVIVSDPN 195

This protein is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but do not appear in database search results.E. coli His-90 modulates substrate specificity and is believed part of the active site [Energy metabolism, Amino acids and amines]. Length = 340

>gnl|CDD|132245 TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

 Score = 79.2 bits (195), Expect = 4e-17
 Identities = 70/218 (32%), Positives = 102/218 (46%), Gaps = 20/218 (9%)

Query: 17  EPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTD-AYTWSGKDPEGLFPCILGHEAAGIV 75
           EP KP+V   V++    AG+V +K+    +CHTD +Y + G       P  LGHE +G V
Sbjct: 6   EPGKPMVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRTNHALPLALGHEISGRV 65

Query: 76  ESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSI 135
              G G      G  VI      C EC+ CK+G+  +C   R     G   ND +  F+ 
Sbjct: 66  IQAGAG-AASWIGKAVIVPAVIPCGECELCKTGRGTIC---RAQKMPG---NDMQGGFA- 117

Query: 136 NGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPG 195
                 H +  +      VV +  +A      PL+ V ++   V T   A    A ++ G
Sbjct: 118 -----SHIVVPAKG--LCVVDEARLAAAG--LPLEHVSVVADAVTTPYQAAVQ-AGLKKG 167

Query: 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
            +V V G G VG  + + AKA GA+ V+ IDIDP+K +
Sbjct: 168 DLVIVIGAGGVGGYMVQTAKAMGAA-VVAIDIDPEKLE 204

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 349

>gnl|CDD|182229 PRK10083, PRK10083, putative oxidoreductase; Provisional

 Score = 77.9 bits (192), Expect = 8e-17
 Identities = 62/221 (28%), Positives = 96/221 (43%), Gaps = 34/221 (15%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           K+ V  +PN  L IE+  +  P AGEVR+K+    +C +D++ + G +P   +P ++GHE
Sbjct: 2   KSIVIEKPNS-LAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHE 60

Query: 71  AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRK 130
             G++++VGEGV   + G+ V       C  C  C  GK N+C                 
Sbjct: 61  FFGVIDAVGEGVDAARIGERVAVDPVISCGHCYPCSIGKPNVC----------------- 103

Query: 131 SRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGV---PTGLGA-V 186
           +   + G    H  G   FS+Y VV   +  +I P A  D+       V   P  + A V
Sbjct: 104 TSLVVLG---VHRDG--GFSEYAVVPAKNAHRI-PDAIADQ-----YAVMVEPFTIAANV 152

Query: 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAA-GASRVIGID 226
                     +  ++G G VGL + +  K       VI  D
Sbjct: 153 TGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVAD 193

Length = 339

>gnl|CDD|176211 cd08249, enoyl_reductase_like, enoyl_reductase_like

 Score = 75.7 bits (187), Expect = 5e-16
 Identities = 61/236 (25%), Positives = 77/236 (32%), Gaps = 56/236 (23%)

Query: 11  KAAVAWEPN-KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGH 69
           KAAV   P    LV+ DV V  P   EV +K+   AL   D            +P ILG 
Sbjct: 2   KAAVLTGPGGGLLVVVDVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGFI-PSYPAILGC 60

Query: 70  EAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDR 129
           + AG V  VG GVT  + GD V                             G     N  
Sbjct: 61  DFAGTVVEVGSGVTRFKVGDRVA----------------------------GFVHGGNPN 92

Query: 130 KSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT-------- 181
             R                F +Y V      AKI      ++   L  G+ T        
Sbjct: 93  DPR-------------NGAFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAALALFQK 139

Query: 182 -GLGAVW-NTAKVEPGSIVAVFGLGT-VGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
            GL       +    G  V ++G  + VG    + AK AG  +VI     PK FD 
Sbjct: 140 LGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGY-KVITT-ASPKNFDL 193

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 339

>gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR)

 Score = 74.5 bits (184), Expect = 1e-15
 Identities = 63/218 (28%), Positives = 84/218 (38%), Gaps = 54/218 (24%)

Query: 11  KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL-FPCIL 67
           KA V  E   P  LV+E+V   P   GEVRI++    +   D     GK       P + 
Sbjct: 2   KAVVCKELGGPEDLVLEEVPPEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKPPLPFVP 61

Query: 68  GHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMN 127
           G E AG+VE+VGEGVT  + GD V+                           TG G    
Sbjct: 62  GSEVAGVVEAVGEGVTGFKVGDRVV-------------------------ALTGQG---- 92

Query: 128 DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW 187
                                F++  VV   +V  +      ++   L     T   A+ 
Sbjct: 93  --------------------GFAEEVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYHALV 132

Query: 188 NTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIG 224
             A+++PG  V V G  G VGLA  + AKA GA RVI 
Sbjct: 133 RRARLQPGETVLVLGAAGGVGLAAVQLAKALGA-RVIA 169

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176225 cd08264, Zn_ADH_like2, Alcohol dehydrogenases of the MDR family

 Score = 73.5 bits (181), Expect = 2e-15
 Identities = 61/218 (27%), Positives = 91/218 (41%), Gaps = 28/218 (12%)

Query: 11  KAAVAWEPN--KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILG 68
             A+ +E +  + L +EDV+   P  GEV I++    +   D    +    + + P I G
Sbjct: 1   MKALVFEKSGIENLKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINAVKVKPM-PHIPG 59

Query: 69  HEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128
            E AG+VE VG+ V  V+ GD V+   +     C  C SG   LC   R     GV+ N 
Sbjct: 60  AEFAGVVEEVGDHVKGVKKGDRVVVYNRVFDGTCDMCLSGNEMLC---RNGGIIGVVSN- 115

Query: 129 RKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN 188
                               +++Y VV + ++ KI      +    L     T   A+  
Sbjct: 116 ------------------GGYAEYIVVPEKNLFKIPDSISDELAASLPVAALTAYHAL-K 156

Query: 189 TAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI 225
           TA + PG  V VFG  G  G+   + AK  GA  VI +
Sbjct: 157 TAGLGPGETVVVFGASGNTGIFAVQLAKMMGA-EVIAV 193

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176191 cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

 Score = 71.8 bits (177), Expect = 1e-14
 Identities = 52/225 (23%), Positives = 74/225 (32%), Gaps = 61/225 (27%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQA--GEVRIKILFTALCHTDAYTWSG---KDPEGLFPC 65
           KA    E   P V+E   V  P+   GEV +K+    +   D     G          P 
Sbjct: 2   KAVRIHEYGGPEVLELADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPL 61

Query: 66  ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
           I GH+ AG+V +VG GVT  + GD V                                  
Sbjct: 62  IPGHDVAGVVVAVGPGVTGFKVGDEVF--------------------------------- 88

Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP----T 181
                      G   +   G   +++Y VV    +A        +        +P    T
Sbjct: 89  -----------GMTPFTRGG--AYAEYVVVPADELALKPANLSFE----EAAALPLAGLT 131

Query: 182 GLGAVWNTAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGI 225
              A++    ++ G  V + G  G VG    + AKA GA RVI  
Sbjct: 132 AWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGA-RVIAT 175

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 309

>gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 70.3 bits (173), Expect = 3e-14
 Identities = 32/71 (45%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGE 80
          L IE++ V  P AGEV I++    L   DA    G   E    P  LG+EAAG+VE+VG 
Sbjct: 15 LRIEELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEPPPLPARLGYEAAGVVEAVGA 74

Query: 81 GVTEVQPGDHV 91
          GVT    GD V
Sbjct: 75 GVTGFAVGDRV 85

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 328

>gnl|CDD|176230 cd08269, Zn_ADH9, Alcohol dehydrogenases of the MDR family

 Score = 70.1 bits (172), Expect = 4e-14
 Identities = 45/218 (20%), Positives = 71/218 (32%), Gaps = 62/218 (28%)

Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWS-GKDPE--GLFPCILGHEAAGIVESV 78
             +E+     P  G+V +++    +C +D   ++ G+        P   GHE  G V ++
Sbjct: 7   FEVEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVAL 66

Query: 79  GEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGK 138
           G GV  +  GD V                                               
Sbjct: 67  GPGVRGLAVGDRVA---------------------------------------------- 80

Query: 139 PIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCL---LGCGVPTGLGAVWNTAKVEPG 195
                +    F++Y +        + P     +      LGC +      V+    +  G
Sbjct: 81  ----GLSGGAFAEYDLADADHAVPL-PSLLDGQAFPGEPLGCAL-----NVFRRGWIRAG 130

Query: 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
             VAV G G +GL   + A AAGA RVI ID  P +  
Sbjct: 131 KTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLA 168

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 312

>gnl|CDD|176189 cd05286, QOR2, Quinone oxidoreductase (QOR)

 Score = 68.6 bits (169), Expect = 1e-13
 Identities = 31/70 (44%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 81
          L  EDV V  P  GEV ++     +   D Y  SG  P  L P +LG E AG+VE+VG G
Sbjct: 14 LEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYPLPL-PFVLGVEGAGVVEAVGPG 72

Query: 82 VTEVQPGDHV 91
          VT  + GD V
Sbjct: 73 VTGFKVGDRV 82

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 320

>gnl|CDD|166227 PLN02586, PLN02586, probable cinnamyl alcohol dehydrogenase

 Score = 68.8 bits (168), Expect = 1e-13
 Identities = 58/206 (28%), Positives = 86/206 (41%), Gaps = 23/206 (11%)

Query: 36  EVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHV-IPC 94
           +V +KIL+  +CH+D +T   +     +P + GHE  GIV  +G+ V + + GD V +  
Sbjct: 39  DVTVKILYCGVCHSDLHTIKNEWGFTRYPIVPGHEIVGIVTKLGKNVKKFKEGDRVGVGV 98

Query: 95  YQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYT- 153
               C+ C+ C     N C K         M+      F+ N   I H  GT  +  Y+ 
Sbjct: 99  IVGSCKSCESCDQDLENYCPK---------MI------FTYNS--IGH-DGTKNYGGYSD 140

Query: 154 --VVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVA 211
             VV    V +     PLD    L C   T    +      EPG  + V GLG +G    
Sbjct: 141 MIVVDQHFVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAV 200

Query: 212 EGAKAAGASRVIGIDIDPKKFDRGMS 237
           +  KA G  +V  I     K D  ++
Sbjct: 201 KIGKAFGL-KVTVISSSSNKEDEAIN 225

Length = 360

>gnl|CDD|234025 TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenase, glutathione-independent

 Score = 68.3 bits (167), Expect = 2e-13
 Identities = 68/209 (32%), Positives = 95/209 (45%), Gaps = 24/209 (11%)

Query: 37  VRIKILFTALCHTDAYTWSGKD--PEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPC 94
           V +K++ T +C +D +   G+   P GL   +LGHE  G V   G  V  ++ GD V   
Sbjct: 36  VILKVVTTNICGSDQHMVRGRTTAPTGL---VLGHEITGEVIEKGRDVEFIKIGDIVSVP 92

Query: 95  YQAECRECKFCKSGKTNLCGKVR----GATGAGVMMNDRKSRFSINGKPIYHFMGTSTFS 150
           +   C  C+ CK G T +C  V     GA    V M        + G+  Y  +  + F+
Sbjct: 93  FNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDMGGW-----VGGQSEYVMVPYADFN 147

Query: 151 QYTVV-HDVSVAKIDPQAPLDKVCLLGCGVPTGL-GAVWNTAKVEPGSIVAVFGLGTVGL 208
                  D ++ KI      D   L     PTG  GAV  TA V PGS V + G G VGL
Sbjct: 148 LLKFPDRDQALEKI-----RDLTMLSDI-FPTGYHGAV--TAGVGPGSTVYIAGAGPVGL 199

Query: 209 AVAEGAKAAGASRVIGIDIDPKKFDRGMS 237
           A A  A+  GA+ VI  D++P +  +  S
Sbjct: 200 AAAASAQLLGAAVVIVGDLNPARLAQARS 228

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent [Central intermediary metabolism, One-carbon metabolism]. Length = 393

>gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

 Score = 66.5 bits (163), Expect = 5e-13
 Identities = 45/170 (26%), Positives = 60/170 (35%), Gaps = 54/170 (31%)

Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
             P   G+ + G V  VG GVT  +PGD V            FC                
Sbjct: 19  PLPLPPGYSSVGRVVEVGSGVTGFKPGDRV------------FC---------------- 50

Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
                                  G    ++  VV    +  +    P ++  L      T
Sbjct: 51  ----------------------FGPH--AERVVVPANLLVPLPDGLPPERAALTALA-AT 85

Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
            L  V + A+   G  VAV GLG VGL  A+ AKAAGA  V+G+D D  +
Sbjct: 86  ALNGVRD-AEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAAR 134

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 277

>gnl|CDD|176205 cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase (QOR)

 Score = 65.3 bits (160), Expect = 2e-12
 Identities = 57/228 (25%), Positives = 90/228 (39%), Gaps = 51/228 (22%)

Query: 11  KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILG 68
           KA V  +P  P  L + ++ +  P+ G V I++    L  ++ +T  G  P   FP +LG
Sbjct: 2   KAIVIEQPGGPEVLKLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPSVKFPRVLG 61

Query: 69  HEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128
            EA G VE    G     PG  V                           AT  G M   
Sbjct: 62  IEAVGEVEEAPGG--TFTPGQRV---------------------------ATAMGGMG-- 90

Query: 129 RKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN 188
                + +G          ++++YT+V +  V  ID      ++  L     T  G+++ 
Sbjct: 91  ----RTFDG----------SYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAWGSLFR 136

Query: 189 TAKVEPGSIVAVFGLGT--VGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           +  ++PG  + + G GT  VGLA  + AKA GA  V      P++   
Sbjct: 137 SLGLQPGDTLLIRG-GTSSVGLAALKLAKALGA-TVTATTRSPERAAL 182

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 320

>gnl|CDD|215378 PLN02702, PLN02702, L-idonate 5-dehydrogenase

 Score = 64.8 bits (158), Expect = 4e-12
 Identities = 57/223 (25%), Positives = 85/223 (38%), Gaps = 42/223 (18%)

Query: 20  KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAY---TWSGKDPEGLFPCILGHEAAGIVE 76
             L I+  ++ P    +VR+++    +C +D +   T    D     P ++GHE AGI+E
Sbjct: 27  NTLKIQPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIE 86

Query: 77  SVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSIN 136
            VG  V  +  GD V       C  C  CK G+ NLC                       
Sbjct: 87  EVGSEVKHLVVGDRVALEPGISCWRCNLCKEGRYNLC----------------------- 123

Query: 137 GKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCL--------LGCGVPTGLGAVWN 188
             P   F  T           V  A +  + P + V L        L  GV         
Sbjct: 124 --PEMKFFATPPVHGSLANQVVHPADLCFKLP-ENVSLEEGAMCEPLSVGVHA-----CR 175

Query: 189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
            A + P + V V G G +GL     A+A GA R++ +D+D ++
Sbjct: 176 RANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDER 218

Length = 364

>gnl|CDD|176233 cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 64.1 bits (157), Expect = 5e-12
 Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 3/89 (3%)

Query: 11 KAAVAWEPNKPLVIEDVQVAPPQ--AGEVRIKILFTALCHTDAYTWSGKDPEGL-FPCIL 67
          KA V      P V E  +V  PQ   G+V +++  + +   D     G        P IL
Sbjct: 2  KALVLESFGGPEVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPAIL 61

Query: 68 GHEAAGIVESVGEGVTEVQPGDHVIPCYQ 96
          G + AG+VE+VGEGVT  + GD V  C  
Sbjct: 62 GCDVAGVVEAVGEGVTRFRVGDEVYGCAG 90

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 326

>gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

 Score = 63.8 bits (156), Expect = 7e-12
 Identities = 50/218 (22%), Positives = 81/218 (37%), Gaps = 53/218 (24%)

Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK-DPEGLFPCILGHEAAGIVESVGE 80
           L + D+ V  P  GEV +++  + +   D Y  +G        P + G + AG+VE+VGE
Sbjct: 15  LRLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVPGSDGAGVVEAVGE 74

Query: 81  GVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPI 140
           GV  ++ GD V            +  +             G                   
Sbjct: 75  GVDGLKVGDRV------------WLTNLGWG------RRQG------------------- 97

Query: 141 YHFMGTSTFSQYTVVHDVSVAKIDPQAPLDK-VCLLGCGVP--TGLGAVWNTAKVEPGSI 197
                  T ++Y VV    +  +      ++   L   G+P  T   A+++ A  + G  
Sbjct: 98  -------TAAEYVVVPADQLVPLPDGVSFEQGAAL---GIPALTAYRALFHRAGAKAGET 147

Query: 198 VAVFG-LGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           V V G  G VG A  + A+ AGA RVI      +  + 
Sbjct: 148 VLVHGGSGAVGHAAVQLARWAGA-RVIATASSAEGAEL 184

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176192 cd08230, glucose_DH, Glucose dehydrogenase

 Score = 63.0 bits (154), Expect = 1e-11
 Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 15/126 (11%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTD------AYTWSGKDPEGLFP 64
           KA         + + D+    P  GEV ++ L   +C TD       Y  +   P G   
Sbjct: 2   KAIAVKPGKPGVRVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTA---PPGEDF 58

Query: 65  CILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLC----GKVRGAT 120
            +LGHEA G+VE VG+G + + PGD V+P  +    +C  C+ G+ + C       RG  
Sbjct: 59  LVLGHEALGVVEEVGDG-SGLSPGDLVVPTVRRPPGKCLNCRIGRPDFCETGEYTERGIK 117

Query: 121 GA-GVM 125
           G  G M
Sbjct: 118 GLHGFM 123

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 355

>gnl|CDD|176218 cd08256, Zn_ADH2, Alcohol dehydrogenases of the MDR family

 Score = 62.0 bits (151), Expect = 2e-11
 Identities = 60/243 (24%), Positives = 94/243 (38%), Gaps = 51/243 (20%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSG---------KDPEG 61
           +A V   P +   +E+V V  P  GE+ +K+    +C  D   + G         + P  
Sbjct: 2   RAVVCHGP-QDYRLEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYV 60

Query: 62  LFPCILGHEAAGIVESVGEGVTE--VQPGDHVIPCYQAECRECKFCKSG------KTNLC 113
             P I GHE  G V  +GEG  E  V+ GD VI      C  C+FC  G      K +L 
Sbjct: 61  KPPMIPGHEFVGRVVELGEGAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDLY 120

Query: 114 GKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVC 173
           G      G                  +  +M    F +  +VH     K+    P +   
Sbjct: 121 GFQNNVNGG-----------------MAEYM---RFPKEAIVH-----KVPDDIPPEDAI 155

Query: 174 L---LGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230
           L   L C     L AV + A ++   +V + G G +GL +   A+     ++I +D+  +
Sbjct: 156 LIEPLACA----LHAV-DRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDE 210

Query: 231 KFD 233
           +  
Sbjct: 211 RLA 213

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 350

>gnl|CDD|166155 PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase

 Score = 61.7 bits (150), Expect = 3e-11
 Identities = 55/185 (29%), Positives = 75/185 (40%), Gaps = 18/185 (9%)

Query: 36  EVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHV-IPC 94
           +V IK+++  +CHTD +          +P + GHE  G V  VG  V++   GD V +  
Sbjct: 36  DVVIKVIYCGICHTDLHQIKNDLGMSNYPMVPGHEVVGEVVEVGSDVSKFTVGDIVGVGV 95

Query: 95  YQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTV 154
               C EC  CKS     C K   +       ND       +GKP         F+   V
Sbjct: 96  IVGCCGECSPCKSDLEQYCNKRIWS------YND----VYTDGKPT-----QGGFASAMV 140

Query: 155 VHDVSVAKI-DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEG 213
           V    V KI +  AP     LL  GV T    + +    + G    + GLG VG    + 
Sbjct: 141 VDQKFVVKIPEGMAPEQAAPLLCAGV-TVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKI 199

Query: 214 AKAAG 218
           AKA G
Sbjct: 200 AKAMG 204

Length = 357

>gnl|CDD|176223 cd08262, Zn_ADH8, Alcohol dehydrogenases of the MDR family

 Score = 61.6 bits (150), Expect = 4e-11
 Identities = 50/225 (22%), Positives = 83/225 (36%), Gaps = 46/225 (20%)

Query: 19  NKPLVIEDVQVAPPQAGEVRIKILFTALCHTD----------AYTWSGKDPEGLF-PCIL 67
           + PLV+ DV    P  G+V +K+L   +C +D               G     L    +L
Sbjct: 8   DGPLVVRDVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVL 67

Query: 68  GHEAAGIVESVGEGV-TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           GHE  G V   G G   +++ G  V       C +   C  G +        A G     
Sbjct: 68  GHEFCGEVVDYGPGTERKLKVGTRVTSLPLLLCGQGASCGIGLSP------EAPGG---- 117

Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
                                 +++Y ++ +  + ++     ++   L    +  GL AV
Sbjct: 118 ----------------------YAEYMLLSEALLLRVPDGLSMEDAALTE-PLAVGLHAV 154

Query: 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
              A++ PG +  V G G +GLAV    KA G   ++  D  P++
Sbjct: 155 -RRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPER 198

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176237 cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 61.0 bits (149), Expect = 5e-11
 Identities = 51/206 (24%), Positives = 80/206 (38%), Gaps = 36/206 (17%)

Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAY----TWSGKDPEGLFPCILGHEAAGIVES 77
           L + +  V  P  GEV +++   +L + D       +     + L P     + AG V +
Sbjct: 15  LKLVEEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPPPVKDPLIPL---SDGAGEVVA 71

Query: 78  VGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSING 137
           VGEGVT  + GD V+P +                L G       A  +         I+G
Sbjct: 72  VGEGVTRFKVGDRVVPTFFP------------NWLDGPPTAEDEASAL------GGPIDG 113

Query: 138 KPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSI 197
                       ++Y V+ +  + +       ++   L C   T   A++    ++PG  
Sbjct: 114 ----------VLAEYVVLPEEGLVRAPDHLSFEEAATLPCAGLTAWNALFGLGPLKPGDT 163

Query: 198 VAVFGLGTVGLAVAEGAKAAGASRVI 223
           V V G G V L   + AKAAGA RVI
Sbjct: 164 VLVQGTGGVSLFALQFAKAAGA-RVI 188

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 336

>gnl|CDD|176645 cd05282, ETR_like, 2-enoyl thioester reductase-like

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 7/79 (8%)

Query: 20 KPLVIEDVQVA--PPQAGEVRIKILFTALCHTDAYTWSGK---DPEGLFPCILGHEAAGI 74
           PLV+E V +   PP  GEV +++L   +  +D  T SG     P    P + G+E  G+
Sbjct: 10 LPLVLELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSRPP--LPAVPGNEGVGV 67

Query: 75 VESVGEGVTEVQPGDHVIP 93
          V  VG GV+ +  G  V+P
Sbjct: 68 VVEVGSGVSGLLVGQRVLP 86

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 323

>gnl|CDD|176252 cd08292, ETR_like_2, 2-enoyl thioester reductase (ETR) like proteins, child 2

 Score = 57.7 bits (140), Expect = 8e-10
 Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 17 EPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPCILGHEAAGIV 75
          +P   L I +V    P AGEV ++   + + + D +T  G        P I G EA G+V
Sbjct: 11 DPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGYKPELPAIGGSEAVGVV 70

Query: 76 ESVGEGVTEVQPGDHV 91
          ++VGEGV  +Q G  V
Sbjct: 71 DAVGEGVKGLQVGQRV 86

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176204 cd08242, MDR_like, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 51/230 (22%), Positives = 81/230 (35%), Gaps = 64/230 (27%)

Query: 13  AVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAA 72
           A+  +    L +ED+    P  GE  +++L   +C+TD   + G  P   FP + GHE  
Sbjct: 3   ALVLDGGLDLRVEDLPKPEPPPGEALVRVLLAGICNTDLEIYKGYYP---FPGVPGHEFV 59

Query: 73  GIVESVGEG-------VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
           GIVE   E        V E+             C  C++C+ G    C            
Sbjct: 60  GIVEEGPEAELVGKRVVGEI----------NIACGRCEYCRRGLYTHC------------ 97

Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTG--- 182
               ++   I  +          F++Y               PL+ + ++   VP     
Sbjct: 98  --PNRTVLGIVDRD-------GAFAEYLT------------LPLENLHVVPDLVPDEQAV 136

Query: 183 ----LGAVWNT---AKVEPGSIVAVFGLGTVGLAVAEGAKAAGAS-RVIG 224
               L A         + PG  VAV G G +GL +A+     G    ++G
Sbjct: 137 FAEPLAAALEILEQVPITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVG 186

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|177834 PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase

 Score = 55.8 bits (134), Expect = 4e-09
 Identities = 52/185 (28%), Positives = 72/185 (38%), Gaps = 17/185 (9%)

Query: 36  EVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHV-IPC 94
           +V +KILF  +CH+D +T         +P I GHE  GI   VG+ VT+ + GD V +  
Sbjct: 33  DVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRVGVGV 92

Query: 95  YQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTV 154
               C+ C+ C     N C KV                F+ N +          +S   V
Sbjct: 93  IIGSCQSCESCNQDLENYCPKV---------------VFTYNSRSSDGTRNQGGYSDVIV 137

Query: 155 VHDVSVAKIDPQAPLDKVCLLGC-GVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEG 213
           V    V  I    P D    L C G+       +     E G  + V GLG +G    + 
Sbjct: 138 VDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKI 197

Query: 214 AKAAG 218
            KA G
Sbjct: 198 GKAFG 202

Length = 375

>gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 55.3 bits (134), Expect = 5e-09
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 25 EDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL---FPCILGHEAAGIVESVGEG 81
           +V +  P+ GEV +K+   ++   D     G     L   FP I G + AG V +VG G
Sbjct: 17 VEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSG 76

Query: 82 VTEVQPGDHV 91
          VT  + GD V
Sbjct: 77 VTRFKVGDEV 86

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|132409 TIGR03366, HpnZ_proposed, putative phosphonate catabolism associated alcohol dehydrogenase

 Score = 54.4 bits (131), Expect = 7e-09
 Identities = 38/175 (21%), Positives = 63/175 (36%), Gaps = 23/175 (13%)

Query: 66  ILGHEAAGIVESVGEGVTE------VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGA 119
           +LGHE  G V ++  G T       ++ G  V+      C  C  C+ G    C  +R  
Sbjct: 1   VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRKY 60

Query: 120 TGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTV-VHDVSVAKIDPQAPLDKVCLLGCG 178
                                     +  ++++       ++  +    P       GC 
Sbjct: 61  GHE---------ALDSGWPL------SGGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCA 105

Query: 179 VPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
             T + A+     ++ G  V V G G +GL  A  A AAGA+RV+  D  P + +
Sbjct: 106 TATVMAALEAAGDLK-GRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRE 159

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. Length = 280

>gnl|CDD|182701 PRK10754, PRK10754, quinone oxidoreductase, NADPH-dependent; Provisional

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 21 PLVIEDVQVAP--PQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESV 78
          P V++ V+  P  P   EV+++     + + D Y  SG  P    P  LG EAAG+V  V
Sbjct: 13 PEVLQAVEFTPADPAENEVQVENKAIGINYIDTYIRSGLYPPPSLPSGLGTEAAGVVSKV 72

Query: 79 GEGVTEVQPGDHVI 92
          G GV  ++ GD V+
Sbjct: 73 GSGVKHIKVGDRVV 86

Length = 327

>gnl|CDD|176236 cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 52.6 bits (127), Expect = 5e-08
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 3/73 (4%)

Query: 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSG--KDPEGLFPCILGHEAAGIVESVG 79
          L +E   +  P +GEVR+++    L   D     G         P + G E AG VE+VG
Sbjct: 14 LKVEKEALPEPSSGEVRVRVEACGLNFADLMARQGLYDSAPKP-PFVPGFECAGTVEAVG 72

Query: 80 EGVTEVQPGDHVI 92
          EGV + + GD V+
Sbjct: 73 EGVKDFKVGDRVM 85

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176179 cd05195, enoyl_red, enoyl reductase of polyketide synthase

 Score = 51.8 bits (125), Expect = 6e-08
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 35 GEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 92
           EV +++    L   D     G  P       LG E +GIV  VG GVT ++ GD V+
Sbjct: 1  DEVEVEVKAAGLNFRDVLVALGLLPGD--ETPLGLECSGIVTRVGSGVTGLKVGDRVM 56

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 293

>gnl|CDD|182130 PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 40/179 (22%), Positives = 64/179 (35%), Gaps = 45/179 (25%)

Query: 64  PCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAG 123
           P +LGHE  G +       + ++ G  V       C  CK+C S   N C  +R      
Sbjct: 60  PMVLGHEVIGKIVHSDS--SGLKEGQTVAINPSKPCGHCKYCLSHNENQCTTMR------ 111

Query: 124 VMMNDRKSRFSINGKPIYHFMGTST--------FSQYTVVHDVSVAKIDPQAPLDKVCLL 175
                              F G++         F++Y VV          +A  +KV  +
Sbjct: 112 -------------------FFGSAMYFPHVDGGFTRYKVVDTAQCIPYPEKAD-EKV--M 149

Query: 176 GCGVPTGLGAVWNTAKVEPGSI----VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230
               P    AV   A  + G +    V V G+G +G  +    K  GA+ ++  D+ P+
Sbjct: 150 AFAEPL---AVAIHAAHQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPR 205

Length = 343

>gnl|CDD|176214 cd08252, AL_MDR, Arginate lyase and other MDR family members

 Score = 50.6 bits (122), Expect = 2e-07
 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 5/86 (5%)

Query: 11 KAAVAWEPNK---PLVIEDVQVAPPQAG--EVRIKILFTALCHTDAYTWSGKDPEGLFPC 65
          KA    +P     P  + D+++  P  G  ++ +++   ++   D    +G  P    P 
Sbjct: 2  KAIGFTQPLPITDPDSLIDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPVPGQPK 61

Query: 66 ILGHEAAGIVESVGEGVTEVQPGDHV 91
          ILG +A+G+VE+VG  VT  + GD V
Sbjct: 62 ILGWDASGVVEAVGSEVTLFKVGDEV 87

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 336

>gnl|CDD|176232 cd08271, MDR5, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 2/84 (2%)

Query: 10 CKAAVAWEPNKPLVIEDVQVA--PPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
           KA V  +P   L +   ++    P AGEV +K+    L   D    +   P   +P + 
Sbjct: 1  MKAWVLPKPGAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPAWSYPHVP 60

Query: 68 GHEAAGIVESVGEGVTEVQPGDHV 91
          G + AG+V +VG  VT  + GD V
Sbjct: 61 GVDGAGVVVAVGAKVTGWKVGDRV 84

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 325

>gnl|CDD|176180 cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase

 Score = 49.7 bits (120), Expect = 4e-07
 Identities = 32/85 (37%), Positives = 40/85 (47%), Gaps = 5/85 (5%)

Query: 11 KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--DPEGLFPCI 66
          KA V  EP  P  L + +V    P  GEV I++    +   D     G    P G    I
Sbjct: 2  KAIVIKEPGGPEVLELGEVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPPPPGASD-I 60

Query: 67 LGHEAAGIVESVGEGVTEVQPGDHV 91
          LG E AG+V +VG GVT  + GD V
Sbjct: 61 LGLEVAGVVVAVGPGVTGWKVGDRV 85

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|131869 TIGR02822, adh_fam_2, zinc-binding alcohol dehydrogenase family protein

 Score = 49.1 bits (117), Expect = 7e-07
 Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 1/98 (1%)

Query: 21  PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGE 80
           PL   +  V  P  GE+ +++    +C TD +   G  P        GHE  G V   G 
Sbjct: 14  PLRFVERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPVHRPRVTPGHEVVGEVAGRGA 73

Query: 81  GVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVR 117
                  GD V I   +  C  C++C+ G  NLC   R
Sbjct: 74  DAGGFAVGDRVGIAWLRRTCGVCRYCRRGAENLCPASR 111

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized [Energy metabolism, Fermentation]. Length = 329

>gnl|CDD|176212 cd08250, Mgc45594_like, Mgc45594 gene product and other MDR family members

 Score = 48.8 bits (117), Expect = 7e-07
 Identities = 28/69 (40%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 24 IEDVQVAPPQAGEVRIKILFTALCHTDA-YTWSGKDPEGLFPCILGHEAAGIVESVGEGV 82
          I DV V  P  GEV +K  F  +  +D  +T    DP    P   G E  G V +VGEGV
Sbjct: 20 IVDVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVGEGV 79

Query: 83 TEVQPGDHV 91
          T+ + GD V
Sbjct: 80 TDFKVGDAV 88

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|176250 cd08290, ETR, 2-enoyl thioester reductase (ETR)

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 6/84 (7%)

Query: 16 WEPNKPLVIEDVQVAPPQA-GEVRIKILFTALCHTDAYTWSGKDP-----EGLFPCILGH 69
           EP + L +E  ++ PP    EV +K+L   +   D     G  P         P + G+
Sbjct: 10 GEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGN 69

Query: 70 EAAGIVESVGEGVTEVQPGDHVIP 93
          E  G V  VG GV  ++PGD VIP
Sbjct: 70 EGVGEVVKVGSGVKSLKPGDWVIP 93

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 341

>gnl|CDD|176213 cd08251, polyketide_synthase, polyketide synthase

 Score = 46.7 bits (111), Expect = 3e-06
 Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 1/66 (1%)

Query: 28 QVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ 86
          +VAPP  GEVRI++   +L   D     G  P    +P   G EA+G+V +VG  VT + 
Sbjct: 1  EVAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVTRLA 60

Query: 87 PGDHVI 92
           GD VI
Sbjct: 61 VGDEVI 66

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 303

>gnl|CDD|176208 cd08246, crotonyl_coA_red, crotonyl-CoA reductase

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 12/87 (13%)

Query: 17  EPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC----------- 65
           +P + + +EDV V     GEV + ++   + + + +   G+ P   F             
Sbjct: 25  DPAQAIQLEDVPVPELGPGEVLVAVMAAGVNYNNVWAALGE-PVSTFAARQRRGRDEPYH 83

Query: 66  ILGHEAAGIVESVGEGVTEVQPGDHVI 92
           I G +A+GIV +VGEGV   + GD V+
Sbjct: 84  IGGSDASGIVWAVGEGVKNWKVGDEVV 110

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 393

>gnl|CDD|176234 cd08273, MDR8, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 7/75 (9%)

Query: 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAY----TWSGKDPEGLFPCILGHEAAGIVES 77
          L + +  +  P AGEV +K+  + +   D       +  + P    P   G++  G V++
Sbjct: 15 LKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQPP---LPFTPGYDLVGRVDA 71

Query: 78 VGEGVTEVQPGDHVI 92
          +G GVT  + GD V 
Sbjct: 72 LGSGVTGFEVGDRVA 86

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 331

>gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 3/73 (4%)

Query: 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--DPEGLFPCILGHEAAGIVESVG 79
          L I +     P+  +V IK+    +   D     GK   P G    ILG E AG VE VG
Sbjct: 16 LKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPPPPGSSE-ILGLEVAGYVEDVG 74

Query: 80 EGVTEVQPGDHVI 92
            V   + GD V+
Sbjct: 75 SDVKRFKEGDRVM 87

Length = 334

>gnl|CDD|188164 TIGR01751, crot-CoA-red, crotonyl-CoA reductase

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 43/185 (23%), Positives = 75/185 (40%), Gaps = 39/185 (21%)

Query: 66  ILGHEAAGIVESVGEGVTEVQPGDHVI-PCYQAECRECKFCKSGKTNLCGKVRGATGAGV 124
           I+G +A+G+V  VG GVT  + GD V+  C Q +       + G   L  + R       
Sbjct: 80  IIGSDASGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPD-GRDGDPMLSSEQR------- 131

Query: 125 MMNDRKSRFSINGKPIYHFMGT-STFSQYTVVHDVSVAKIDPQAPL----DKVCLLGCGV 179
                          I+ +     +F+++ +V D    ++ P+       +  C    G 
Sbjct: 132 ---------------IWGYETNFGSFAEFALVKD---YQLMPKPKHLTWEEAACPGLTG- 172

Query: 180 PTGLGAV--WNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK--FDR 234
            T    +  WN A V+PG  V ++G  G +G    + A+A G + V  +   P+K  + R
Sbjct: 173 ATAYRQLVGWNPAAVKPGDNVLIWGAAGGLGSYATQLARAGGGNPV-AVVSSPEKAEYCR 231

Query: 235 GMSCV 239
            +   
Sbjct: 232 SLGAE 236

The enzyme modelled by This model is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae. Length = 398

>gnl|CDD|214840 smart00829, PKS_ER, Enoylreductase

 Score = 43.5 bits (104), Expect = 4e-05
 Identities = 14/26 (53%), Positives = 17/26 (65%)

Query: 67 LGHEAAGIVESVGEGVTEVQPGDHVI 92
          LG E AG+V  VG GVT +  GD V+
Sbjct: 26 LGGECAGVVTRVGPGVTGLAVGDRVM 51

Enoylreductase in Polyketide synthases. Length = 287

>gnl|CDD|234024 TIGR02817, adh_fam_1, zinc-binding alcohol dehydrogenase family protein

 Score = 43.2 bits (102), Expect = 6e-05
 Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 6/85 (7%)

Query: 13 AVAWEPNKPL----VIEDVQVAPPQAGE--VRIKILFTALCHTDAYTWSGKDPEGLFPCI 66
          AV ++   P+     + D+ +  P+ G   + +++   ++   D    +   PE   P I
Sbjct: 2  AVGYKKPLPITDPDALVDIDLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAPEAGQPKI 61

Query: 67 LGHEAAGIVESVGEGVTEVQPGDHV 91
          LG +AAG+V +VG+ VT  +PGD V
Sbjct: 62 LGWDAAGVVVAVGDEVTLFKPGDEV 86

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model [Energy metabolism, Fermentation]. Length = 336

>gnl|CDD|234027 TIGR02824, quinone_pig3, putative NAD(P)H quinone oxidoreductase, PIG3 family

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 34/85 (40%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 11 KAAVAWEPNKPLVIEDVQVAPPQ--AGEVRIKILFTALCHTDAYTWSGK--DPEGLFPCI 66
          KA    EP  P V+  V+V  P   AGEV I++    +   D    +GK   P G    I
Sbjct: 2  KAIEITEPGGPEVLVLVEVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPPPPGASD-I 60

Query: 67 LGHEAAGIVESVGEGVTEVQPGDHV 91
          LG E AG V +VGEGV+  + GD V
Sbjct: 61 LGLEVAGEVVAVGEGVSRWKVGDRV 85

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized [Unknown function, Enzymes of unknown specificity]. Length = 325

>gnl|CDD|215721 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 14/28 (50%), Positives = 19/28 (67%)

Query: 206 VGLAVAEGAKAAGASRVIGIDIDPKKFD 233
           VGLA  + AKA GA+RVI +D   +K +
Sbjct: 2   VGLAAVQLAKALGAARVIAVDRSEEKLE 29

Length = 131

>gnl|CDD|234094 TIGR03026, NDP-sugDHase, nucleotide sugar dehydrogenase

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
           +AV GLG VGL +A      G   V G+DID +K D
Sbjct: 3   IAVIGLGYVGLPLAALLADLGHD-VTGVDIDQEKVD 37

Enzymes in this family catalyze the NAD-dependent alcohol-to-acid oxidation of nucleotide-linked sugars. Examples include UDP-glucose 6-dehydrogenase (1.1.1.22) , GDP-mannose 6-dehydrogenase (1.1.1.132) , UDP-N-acetylglucosamine 6-dehydrogenase (1.1.1.136), UDP-N-acetyl-D-galactosaminuronic acid dehydrogenase and UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase. These enzymes are most often involved in the biosynthesis of polysaccharides and are often found in operons devoted to that purpose. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. Length = 409

>gnl|CDD|176251 cd08291, ETR_like_1, 2-enoyl thioester reductase (ETR) like proteins, child 1

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 20 KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK-DPEGLFPCILGHEAAGIVESV 78
          K L + + +V  P  GEV IK+    +  +D     G+       P   G E +G V + 
Sbjct: 16 KELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGSTKALPVPPGFEGSGTVVAA 75

Query: 79 GEGV 82
          G G 
Sbjct: 76 GGGP 79

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|223749 COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 1/37 (2%)

Query: 198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           + V GLG VGL +A  A A+   +VIG+DI+ KK D+
Sbjct: 12  IGVIGLGYVGLPLA-AAFASAGFKVIGVDINQKKVDK 47

Length = 436

>gnl|CDD|176190 cd05288, PGDH, Prostaglandin dehydrogenases

 Score = 37.8 bits (89), Expect = 0.003
 Identities = 49/216 (22%), Positives = 70/216 (32%), Gaps = 71/216 (32%)

Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAY--TWSGKDPEGLFPCILGH--EAAGI--- 74
             + +V +   + GEV ++ L+ ++   D Y   W         P  LG      G+   
Sbjct: 20  FELVEVPLPELKDGEVLVRTLYLSV---DPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEV 76

Query: 75  VESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFS 134
           VES        + GD V                                           
Sbjct: 77  VESRSPD---FKVGDLV------------------------------------------- 90

Query: 135 INGKPIYHFMGTSTFSQYTVVHDVS-VAKIDPQAPLDKVCLLG-CGVP--TGLGAVWNTA 190
                   F+G   + +Y VV   S + K+DP   L     LG  G+   T    +    
Sbjct: 91  ------SGFLG---WQEYAVVDGASGLRKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIG 141

Query: 191 KVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI 225
           K +PG  V V    G VG  V + AK  GA RV+GI
Sbjct: 142 KPKPGETVVVSAAAGAVGSVVGQIAKLLGA-RVVGI 176

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|176183 cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putative quinone oxidoreductases

 Score = 37.5 bits (88), Expect = 0.003
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 7/74 (9%)

Query: 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL---FPCILGHEAAGIVESV 78
          L +  + +     G+V I++ +++L + DA   +G    G+   +P   G +AAG V S 
Sbjct: 15 LFLRTLPLDDLPEGDVLIRVHYSSLNYKDALAATGN--GGVTRNYPHTPGIDAAGTVVSS 72

Query: 79 GEGVTEVQPGDHVI 92
                 + GD V+
Sbjct: 73 --DDPRFREGDEVL 84

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	246
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	100.0
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	100.0
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	100.0
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	100.0
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	100.0
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	100.0
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	100.0
PLN02740	381	Alcohol dehydrogenase-like	100.0
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	100.0
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	100.0
PLN02827	378	Alcohol dehydrogenase-like	100.0
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	100.0
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	100.0
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	100.0
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	100.0
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	100.0
PLN02586	360	probable cinnamyl alcohol dehydrogenase	100.0
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	100.0
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	100.0
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	100.0
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	100.0
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	100.0
PLN02178	375	cinnamyl-alcohol dehydrogenase	100.0
PLN02514	357	cinnamyl-alcohol dehydrogenase	100.0
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	100.0
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	100.0
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	100.0
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	100.0
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	100.0
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	100.0
PRK10083	339	putative oxidoreductase; Provisional	100.0
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	100.0
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	100.0
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	100.0
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	100.0
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	100.0
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	100.0
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	100.0
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	100.0
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	100.0
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	100.0
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	99.98
PRK13771	334	putative alcohol dehydrogenase; Provisional	99.98
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	99.98
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	99.98
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	99.98
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	99.98
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	99.98
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	99.97
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	99.97
PLN02702	364	L-idonate 5-dehydrogenase	99.97
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	99.97
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	99.97
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	99.97
KOG0025	354	consensus Zn2+-binding dehydrogenase (nuclear rece	99.97
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	99.97
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	99.97
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	99.97
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	99.97
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	99.97
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	99.97
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	99.97
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	99.97
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	99.97
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	99.97
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	99.97
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	99.97
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	99.97
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	99.97
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	99.96
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	99.96
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	99.96
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	99.96
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	99.96
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	99.96
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	99.96
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	99.96
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	99.96
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	99.96
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	99.96
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	99.96
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	99.95
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	99.95
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	99.95
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	99.95
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	99.95
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	99.95
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	99.95
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	99.95
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	99.94
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	99.94
PTZ00354	334	alcohol dehydrogenase; Provisional	99.94
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	99.94
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	99.94
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	99.94
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	99.94
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	99.94
cd08252	336	AL_MDR Arginate lyase and other MDR family members	99.94
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	99.94
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	99.94
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	99.94
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	99.93
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	99.93
cd08271	325	MDR5 Medium chain dehydrogenases/reductase (MDR)/z	99.93
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	99.93
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	99.92
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	99.92
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	99.92
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	99.92
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	99.92
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	99.92
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	99.91
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	99.91
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	99.91
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	99.9
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	99.9
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	99.9
PF08240	109	ADH_N: Alcohol dehydrogenase GroES-like domain; In	99.89
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	99.89
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	99.89
COG2130	340	Putative NADP-dependent oxidoreductases [General f	99.89
cd08275	337	MDR3 Medium chain dehydrogenases/reductase (MDR)/z	99.88
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	99.86
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	99.85
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	99.76
KOG1196	343	consensus Predicted NAD-dependent oxidoreductase [	99.71
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	99.6
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	98.07
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	97.6
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	97.58
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	97.3
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	97.15
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	96.98
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	96.95
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	96.85
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	96.83
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	96.69
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.67
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	96.43
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	96.4
PLN02494	477	adenosylhomocysteinase	96.33
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.06
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	95.96
PF13823	23	ADH_N_assoc: Alcohol dehydrogenase GroES-associate	95.92
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	95.73
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	95.6
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	95.53
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	95.49
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	95.47
PRK08324	681	short chain dehydrogenase; Validated	95.46
PTZ00075	476	Adenosylhomocysteinase; Provisional	95.38
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	95.33
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	95.27
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	95.21
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	95.14
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	95.06
PRK06949	258	short chain dehydrogenase; Provisional	95.01
PRK04148	134	hypothetical protein; Provisional	94.96
PRK05872	296	short chain dehydrogenase; Provisional	94.85
PRK07814	263	short chain dehydrogenase; Provisional	94.76
PRK12829	264	short chain dehydrogenase; Provisional	94.66
PRK05867	253	short chain dehydrogenase; Provisional	94.51
PLN03209	576	translocon at the inner envelope of chloroplast su	94.51
PRK12548	289	shikimate 5-dehydrogenase; Provisional	94.46
PRK07523	255	gluconate 5-dehydrogenase; Provisional	94.46
PRK07060	245	short chain dehydrogenase; Provisional	94.44
PLN02780	320	ketoreductase/ oxidoreductase	94.4
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	94.4
PRK05866	293	short chain dehydrogenase; Provisional	94.39
PRK07576	264	short chain dehydrogenase; Provisional	94.36
PRK07831	262	short chain dehydrogenase; Provisional	94.3
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	94.26
PRK08213	259	gluconate 5-dehydrogenase; Provisional	94.19
PRK05854	313	short chain dehydrogenase; Provisional	94.13
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	94.06
PRK06196	315	oxidoreductase; Provisional	94.03
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	94.01
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	93.99
PRK06841	255	short chain dehydrogenase; Provisional	93.97
PRK06124	256	gluconate 5-dehydrogenase; Provisional	93.86
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	93.83
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	93.79
PRK08085	254	gluconate 5-dehydrogenase; Provisional	93.73
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	93.7
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	93.51
PRK09242	257	tropinone reductase; Provisional	93.42
PRK05717	255	oxidoreductase; Validated	93.4
PRK06197	306	short chain dehydrogenase; Provisional	93.37
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	93.27
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	93.13
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	93.13
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	93.09
PRK08277	278	D-mannonate oxidoreductase; Provisional	93.07
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	92.94
PLN02253	280	xanthoxin dehydrogenase	92.87
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	92.76
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	92.67
PRK13940	414	glutamyl-tRNA reductase; Provisional	92.58
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	92.45
PRK07097	265	gluconate 5-dehydrogenase; Provisional	92.38
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	92.33
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	92.28
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	92.24
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.23
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	92.19
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	92.11
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	92.02
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	91.92
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	91.81
PRK06484	520	short chain dehydrogenase; Validated	91.68
PRK06720	169	hypothetical protein; Provisional	91.61
PRK07775	274	short chain dehydrogenase; Provisional	91.6
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	91.49
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	91.35
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	91.18
PLN00203	519	glutamyl-tRNA reductase	91.03
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	91.01
PLN02686	367	cinnamoyl-CoA reductase	90.92
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	90.9
PRK10669	558	putative cation:proton antiport protein; Provision	90.82
PRK12367	245	short chain dehydrogenase; Provisional	90.67
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	90.6
PRK06523	260	short chain dehydrogenase; Provisional	90.55
PRK03562	621	glutathione-regulated potassium-efflux system prot	90.39
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	90.37
PRK12814	652	putative NADPH-dependent glutamate synthase small	90.35
PLN02896	353	cinnamyl-alcohol dehydrogenase	90.32
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	90.27
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	90.23
PRK03659	601	glutathione-regulated potassium-efflux system prot	89.83
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	89.57
PRK07574	385	formate dehydrogenase; Provisional	89.54
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	89.5
PRK14982	340	acyl-ACP reductase; Provisional	89.47
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.43
PRK13403	335	ketol-acid reductoisomerase; Provisional	89.41
KOG1208	314	consensus Dehydrogenases with different specificit	89.22
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	89.18
PLN03139	386	formate dehydrogenase; Provisional	89.17
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	89.16
PLN02778	298	3,5-epimerase/4-reductase	89.14
PRK06719	157	precorrin-2 dehydrogenase; Validated	89.14
COG0031	300	CysK Cysteine synthase [Amino acid transport and m	88.99
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	88.89
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	88.84
PRK07201	657	short chain dehydrogenase; Provisional	88.71
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	88.65
PRK13984	604	putative oxidoreductase; Provisional	88.65
PLN02928	347	oxidoreductase family protein	88.58
PRK05855	582	short chain dehydrogenase; Validated	88.52
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	88.45
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	88.44
PLN02730	303	enoyl-[acyl-carrier-protein] reductase	88.43
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	88.14
PRK07985	294	oxidoreductase; Provisional	88.09
PRK13243	333	glyoxylate reductase; Reviewed	88.02
KOG1252	362	consensus Cystathionine beta-synthase and related	87.79
PRK09496	453	trkA potassium transporter peripheral membrane com	87.68
PRK09134	258	short chain dehydrogenase; Provisional	87.56
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	87.36
PRK06701	290	short chain dehydrogenase; Provisional	87.35
PRK12831	464	putative oxidoreductase; Provisional	87.33
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	87.23
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	87.2
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	87.19
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	87.18
PLN02427	386	UDP-apiose/xylose synthase	87.18
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	87.16
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	87.1
PRK14967	223	putative methyltransferase; Provisional	87.02
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	87.02
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	86.98
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	86.9
PRK08328	231	hypothetical protein; Provisional	86.87
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	86.72
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	86.71
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	86.61
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	86.56
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	86.54
PLN02214	342	cinnamoyl-CoA reductase	86.51
PRK06128	300	oxidoreductase; Provisional	86.38
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	86.34
PRK12480	330	D-lactate dehydrogenase; Provisional	86.33
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	86.07
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	86.07
PLN03013	429	cysteine synthase	86.05
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	85.92
PRK06436	303	glycerate dehydrogenase; Provisional	85.77
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	85.61
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	85.48
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	85.47
PLN02256	304	arogenate dehydrogenase	85.46
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	85.44
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	85.43
PRK06932	314	glycerate dehydrogenase; Provisional	85.32
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	85.21
PLN00198	338	anthocyanidin reductase; Provisional	85.17
PRK06487	317	glycerate dehydrogenase; Provisional	85.04
KOG1210	331	consensus Predicted 3-ketosphinganine reductase [S	85.02
PRK06141	314	ornithine cyclodeaminase; Validated	84.99
PLN02556	368	cysteine synthase/L-3-cyanoalanine synthase	84.9
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	84.86
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	84.79
TIGR01138	290	cysM cysteine synthase B. Alternate name: O-acetyl	84.78
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	84.62
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	84.44
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	84.36
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	84.3
PRK14031	444	glutamate dehydrogenase; Provisional	84.22
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	84.22
PRK07340	304	ornithine cyclodeaminase; Validated	84.09
COG3288	356	PntA NAD/NADP transhydrogenase alpha subunit [Ener	83.99
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	83.96
PRK08317	241	hypothetical protein; Provisional	83.95
PF11017	314	DUF2855: Protein of unknown function (DUF2855); In	83.95
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	83.93
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	83.93
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	83.89
PRK08291	330	ectoine utilization protein EutC; Validated	83.87
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	83.83
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	83.81
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	83.69
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	83.69
PLN02695	370	GDP-D-mannose-3',5'-epimerase	83.61
PRK12770	352	putative glutamate synthase subunit beta; Provisio	83.46
PRK12779	944	putative bifunctional glutamate synthase subunit b	83.39
PRK08132	547	FAD-dependent oxidoreductase; Provisional	83.24
PRK14030	445	glutamate dehydrogenase; Provisional	83.15
PRK08223	287	hypothetical protein; Validated	83.14
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	83.07
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	83.06
cd01562	304	Thr-dehyd Threonine dehydratase: The first step in	82.94
PRK11761	296	cysM cysteine synthase B; Provisional	82.92
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	82.9
PRK08618	325	ornithine cyclodeaminase; Validated	82.85
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	82.77
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	82.7
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	82.57
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	82.25
PRK15116	268	sulfur acceptor protein CsdL; Provisional	82.18
TIGR01139	298	cysK cysteine synthase A. This model distinguishes	82.16
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	82.16
PLN02206	442	UDP-glucuronate decarboxylase	81.95
PLN02735	1102	carbamoyl-phosphate synthase	81.81
PRK10717	330	cysteine synthase A; Provisional	81.79
PLN02572	442	UDP-sulfoquinovose synthase	81.6
PRK00364	95	groES co-chaperonin GroES; Reviewed	81.57
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	81.5
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	81.47
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	81.37
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	81.28
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	81.16
PLN02565	322	cysteine synthase	81.15
PLN02166	436	dTDP-glucose 4,6-dehydratase	81.11
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	81.09
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	81.06
PF00289	110	CPSase_L_chain: Carbamoyl-phosphate synthase L cha	81.0
cd00320	93	cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); C	80.92
PRK06567	1028	putative bifunctional glutamate synthase subunit b	80.83
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	80.63
PRK12831	464	putative oxidoreductase; Provisional	80.59
PRK11207	197	tellurite resistance protein TehB; Provisional	80.59
TIGR01136	299	cysKM cysteine synthases. This model discriminates	80.53
PTZ00188	506	adrenodoxin reductase; Provisional	80.52
PRK11730	715	fadB multifunctional fatty acid oxidation complex	80.36
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	80.32
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	80.31
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	80.14

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=100.00  E-value=4.1e-52  Score=358.36  Aligned_cols=214  Identities=37%  Similarity=0.529  Sum_probs=203.7

Q ss_pred             ccceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccC
Q 025895            7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQ   86 (246)
Q Consensus         7 ~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~   86 (246)
                      +++|||+++++.++|++++|++.|+|+++||+|||+|+|+|++|++.+.|.++...+|.++|||.+|+|+++|++|+.|+
T Consensus         1 ~~~mkA~~~~~~~~pl~i~e~~~p~p~~~eVlI~v~~~GVChsDlH~~~G~~~~~~~P~ipGHEivG~V~~vG~~V~~~k   80 (339)
T COG1064           1 MMTMKAAVLKKFGQPLEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPVPKLPLIPGHEIVGTVVEVGEGVTGLK   80 (339)
T ss_pred             CcceEEEEEccCCCCceEEeccCCCCCCCeEEEEEEEEeecchhhhhhcCCCCCCCCCccCCcceEEEEEEecCCCccCC
Confidence            47899999999999999999999999999999999999999999999999999888999999999999999999999999


Q ss_pred             CCCEEEe-eCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCC
Q 025895           87 PGDHVIP-CYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP  165 (246)
Q Consensus        87 ~Gd~V~~-~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~  165 (246)
                      +||||.+ +...+|++|.+|.+|++++|++...   .|++ .+|                  +|+||+++++.+++++|+
T Consensus        81 ~GDrVgV~~~~~~Cg~C~~C~~G~E~~C~~~~~---~gy~-~~G------------------Gyaeyv~v~~~~~~~iP~  138 (339)
T COG1064          81 VGDRVGVGWLVISCGECEYCRSGNENLCPNQKI---TGYT-TDG------------------GYAEYVVVPARYVVKIPE  138 (339)
T ss_pred             CCCEEEecCccCCCCCCccccCcccccCCCccc---ccee-ecC------------------cceeEEEEchHHeEECCC
Confidence            9999999 8899999999999999999999765   5555 555                  999999999999999999


Q ss_pred             CCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCccc
Q 025895          166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSSKY  244 (246)
Q Consensus       166 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~~~  244 (246)
                      +++++.||.+.|+..|.|+++ +..+++||++|+|+|+|++|++++|+|+++|+ +|++++++++|++++++|||+..+
T Consensus       139 ~~d~~~aApllCaGiT~y~al-k~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga-~Via~~~~~~K~e~a~~lGAd~~i  215 (339)
T COG1064         139 GLDLAEAAPLLCAGITTYRAL-KKANVKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKKLGADHVI  215 (339)
T ss_pred             CCChhhhhhhhcCeeeEeeeh-hhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEeCChHHHHHHHHhCCcEEE
Confidence            999999999999999999987 44999999999999999999999999999998 999999999999999999999765

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=100.00  E-value=5.5e-49  Score=333.46  Aligned_cols=235  Identities=60%  Similarity=1.037  Sum_probs=227.7

Q ss_pred             cceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCC
Q 025895            8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP   87 (246)
Q Consensus         8 ~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~   87 (246)
                      +++||++.+++++||+++|+.+++|++|||+||+.++|+||+|...++|..+.+ +|.++|||++|+|++||++|+++++
T Consensus         1 mk~~aAV~~~~~~Pl~i~ei~l~~P~~gEVlVri~AtGVCHTD~~~~~G~~p~~-~P~vLGHEgAGiVe~VG~gVt~vkp   79 (366)
T COG1062           1 MKTRAAVAREAGKPLEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDDPEG-FPAVLGHEGAGIVEAVGEGVTSVKP   79 (366)
T ss_pred             CCceEeeeecCCCCeEEEEEecCCCCCCeEEEEEEEeeccccchhhhcCCCCCC-CceecccccccEEEEecCCccccCC
Confidence            578999999999999999999999999999999999999999999999998886 9999999999999999999999999


Q ss_pred             CCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCC
Q 025895           88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA  167 (246)
Q Consensus        88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~  167 (246)
                      ||+|+.....+|++|.+|.+++.++|...+..-+.|.. .+|++++..++.+.+++++.++|++|..+++.++++++++.
T Consensus        80 GDhVI~~f~p~CG~C~~C~sGk~nlC~~~~~~~~kG~m-~dGttrls~~~~~~~h~lG~stFa~y~vv~~~s~vki~~~~  158 (366)
T COG1062          80 GDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTM-PDGTTRLSGNGVPVYHYLGCSTFAEYTVVHEISLVKIDPDA  158 (366)
T ss_pred             CCEEEEcccCCCCCCchhhCCCcccccchhhhcccccc-cCCceeeecCCcceeeeeccccchhheeecccceEECCCCC
Confidence            99999988889999999999999999999998888866 99999999999999999999999999999999999999999


Q ss_pred             CchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCccc
Q 025895          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSSKY  244 (246)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~~~  244 (246)
                      +++.++++.|...|.+-++.+.+++++|++|.|+|.|++|++++|-|+..|+.+||++|.+++|++++++|||+..+
T Consensus       159 p~~~a~llGCgV~TG~Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~v  235 (366)
T COG1062         159 PLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFV  235 (366)
T ss_pred             CccceEEEeeeeccChHHhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999655

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=4.4e-48  Score=323.53  Aligned_cols=241  Identities=73%  Similarity=1.218  Sum_probs=232.9

Q ss_pred             CCcccceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCC
Q 025895            4 EGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVT   83 (246)
Q Consensus         4 ~~~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~   83 (246)
                      ....+++||++.+++++||.++|+..++|+..||+||++++++||+|...|++..+...||.++|||++|+|+++|.+|+
T Consensus         2 ~gkvI~CKAAV~w~a~~PL~IEei~V~pPka~EVRIKI~~t~vCHTD~~~~~g~~~~~~fP~IlGHEaaGIVESvGegV~   81 (375)
T KOG0022|consen    2 AGKVITCKAAVAWEAGKPLVIEEIEVAPPKAHEVRIKILATGVCHTDAYVWSGKDPEGLFPVILGHEAAGIVESVGEGVT   81 (375)
T ss_pred             CCCceEEeEeeeccCCCCeeEEEEEeCCCCCceEEEEEEEEeeccccceeecCCCccccCceEecccceeEEEEecCCcc
Confidence            35678999999999999999999999999999999999999999999999999987778999999999999999999999


Q ss_pred             ccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEc
Q 025895           84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI  163 (246)
Q Consensus        84 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i  163 (246)
                      ++++||+|+......|+.|.+|.++..|.|...+.+.+.+.+..||++|+.-+|+.+|++++.++|+||.+++...+++|
T Consensus        82 ~vk~GD~Viplf~p~CgeCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~~~gk~iyHfmg~StFsEYTVv~~~~v~kI  161 (375)
T KOG0022|consen   82 TVKPGDHVIPLFTPQCGECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFTCKGKPIYHFMGTSTFSEYTVVDDISVAKI  161 (375)
T ss_pred             ccCCCCEEeeccccCCCCcccccCCCCChhhhhcccccccccccCCceeeeeCCCceEEecccccceeEEEeecceeEec
Confidence            99999999999999999999999999999999999988888888999999999999999999999999999999999999


Q ss_pred             CCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCcc
Q 025895          164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSSK  243 (246)
Q Consensus       164 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~~  243 (246)
                      ++..+++.++++.|.+.|+|.|.++.+++++|+++.|+|.|.+|+++++-||+.|+.+||++|.+++|.++++++|++..
T Consensus       162 d~~aPl~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~  241 (375)
T KOG0022|consen  162 DPSAPLEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEF  241 (375)
T ss_pred             CCCCChhheeEeeccccccchhhhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCccee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999854


Q ss_pred             c
Q 025895          244 Y  244 (246)
Q Consensus       244 ~  244 (246)
                      +
T Consensus       242 i  242 (375)
T KOG0022|consen  242 I  242 (375)
T ss_pred             c
Confidence            3

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=7.8e-45  Score=305.21  Aligned_cols=224  Identities=31%  Similarity=0.460  Sum_probs=200.9

Q ss_pred             CCCCCcccceeeeEeecCCC--CeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEc
Q 025895            1 MSTEGQVITCKAAVAWEPNK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESV   78 (246)
Q Consensus         1 m~~~~~~~~~ka~~~~~~~~--~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~v   78 (246)
                      |++...+.++++|.++++++  ++++.+++.|+|+++||+||++|+||||+|++.|.+.+....+|.++|||.+|+|+++
T Consensus         1 ~~~~~~p~k~~g~~~~~~~G~l~p~~~~~~~~~~g~~dv~vkI~~cGIChsDlH~~~gdwg~s~~PlV~GHEiaG~Vvkv   80 (360)
T KOG0023|consen    1 MSSMSIPEKQFGWAARDPSGVLSPEVFSFPVREPGENDVLVKIEYCGVCHSDLHAWKGDWGLSKYPLVPGHEIAGVVVKV   80 (360)
T ss_pred             CCcccCchhhEEEEEECCCCCCCcceeEcCCCCCCCCcEEEEEEEEeccchhHHHhhccCCcccCCccCCceeeEEEEEE
Confidence            67777889999999999998  5677999999999999999999999999999999999988889999999999999999


Q ss_pred             CCCCCccCCCCEEEee-CCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeec
Q 025895           79 GEGVTEVQPGDHVIPC-YQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD  157 (246)
Q Consensus        79 G~~~~~~~~Gd~V~~~-~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~  157 (246)
                      |+++++|++||||-+- ...+|..|.+|.++.++.|++.-. ...|+. .||             ..++|+|++|+++++
T Consensus        81 Gs~V~~~kiGD~vGVg~~~~sC~~CE~C~~~~E~yCpk~~~-t~~g~~-~DG-------------t~~~ggf~~~~~v~~  145 (360)
T KOG0023|consen   81 GSNVTGFKIGDRVGVGWLNGSCLSCEYCKSGNENYCPKMHF-TYNGVY-HDG-------------TITQGGFQEYAVVDE  145 (360)
T ss_pred             CCCcccccccCeeeeeEEeccccCccccccCCcccCCceeE-eccccc-cCC-------------CCccCccceeEEEee
Confidence            9999999999999654 567999999999999999995322 123333 444             677789999999999


Q ss_pred             CceEEcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh-hHHHHHh
Q 025895          158 VSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP-KKFDRGM  236 (246)
Q Consensus       158 ~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~-~~~~~~~  236 (246)
                      .++++||++++.+.||.+.|+..|.|.+| ...++.||++|.|.|+|++|.+++|+||+||. +|+++++++ +|.+..+
T Consensus       146 ~~a~kIP~~~pl~~aAPlLCaGITvYspL-k~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~-rV~vis~~~~kkeea~~  223 (360)
T KOG0023|consen  146 VFAIKIPENLPLASAAPLLCAGITVYSPL-KRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGM-RVTVISTSSKKKEEAIK  223 (360)
T ss_pred             eeEEECCCCCChhhccchhhcceEEeehh-HHcCCCCCcEEEEecCcccchHHHHHHHHhCc-EEEEEeCCchhHHHHHH
Confidence            99999999999999999999999999986 66888899999999997799999999999999 999999998 5666667


Q ss_pred             hcCCC
Q 025895          237 SCVSS  241 (246)
Q Consensus       237 ~lg~~  241 (246)
                      .|||+
T Consensus       224 ~LGAd  228 (360)
T KOG0023|consen  224 SLGAD  228 (360)
T ss_pred             hcCcc
Confidence            79998

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.4e-43  Score=298.24  Aligned_cols=212  Identities=28%  Similarity=0.410  Sum_probs=195.4

Q ss_pred             ccceeeeEeecCCCCeEEEEeecCCC-CCCeEEEEEeeeecchhhhhhhcCCCCCC---CCCcccccceEEEEEEcCCCC
Q 025895            7 VITCKAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDPEG---LFPCILGHEAAGIVESVGEGV   82 (246)
Q Consensus         7 ~~~~ka~~~~~~~~~~~~~e~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~~~~~~~---~~p~v~G~e~vG~V~~vG~~~   82 (246)
                      ..+|+|++++++++ ++++++|.|++ .|+||+|++.++|||++|++.|.......   +-|.++|||.+|+|+++|+.|
T Consensus         2 ~~~~~A~vl~g~~d-i~i~~~p~p~i~~p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~~V   80 (354)
T KOG0024|consen    2 AADNLALVLRGKGD-IRIEQRPIPTITDPDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGDEV   80 (354)
T ss_pred             CcccceeEEEccCc-eeEeeCCCCCCCCCCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhhcccc
Confidence            36899999999999 99999999997 99999999999999999999997765432   479999999999999999999


Q ss_pred             CccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEE
Q 025895           83 TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAK  162 (246)
Q Consensus        83 ~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  162 (246)
                      +++++||||++-|..+|+.|.+|.+|..|+|.+...   .++-..+|                  ++++|++.+++++++
T Consensus        81 k~LkVGDrVaiEpg~~c~~cd~CK~GrYNlCp~m~f---~atpp~~G------------------~la~y~~~~~dfc~K  139 (354)
T KOG0024|consen   81 KHLKVGDRVAIEPGLPCRDCDFCKEGRYNLCPHMVF---CATPPVDG------------------TLAEYYVHPADFCYK  139 (354)
T ss_pred             cccccCCeEEecCCCccccchhhhCcccccCCcccc---ccCCCcCC------------------ceEEEEEechHheee
Confidence            999999999999999999999999999999998765   23323445                  999999999999999


Q ss_pred             cCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          163 IDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       163 ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      +||++|++++|++. ++.++++|. +++++++|++|||+|+|++|+++...||++|+.+|++++..++|+++++++||+.
T Consensus       140 LPd~vs~eeGAl~e-PLsV~~HAc-r~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~  217 (354)
T KOG0024|consen  140 LPDNVSFEEGALIE-PLSVGVHAC-RRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATV  217 (354)
T ss_pred             CCCCCchhhccccc-chhhhhhhh-hhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeE
Confidence            99999999999876 689999986 7799999999999999999999999999999999999999999999999999984

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=100.00  E-value=2.6e-40  Score=294.35  Aligned_cols=232  Identities=63%  Similarity=1.078  Sum_probs=199.3

Q ss_pred             eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCCC
Q 025895           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (246)
Q Consensus        10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd   89 (246)
                      |||+++...+++++++++|.|+|+++||+|||++++||++|++.+.+.++...+|.++|||++|+|+++|+++++|++||
T Consensus         2 ~~a~~~~~~~~~l~~~~~~~P~~~~~eVlI~v~a~gi~~sD~~~~~g~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd   81 (368)
T TIGR02818         2 SRAAVAWAAGQPLKIEEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPEGVFPVILGHEGAGIVEAVGEGVTSVKVGD   81 (368)
T ss_pred             ceEEEEecCCCCeEEEEecCCCCCCCeEEEEEEEecccHHHHHHhcCCCCCCCCCeeeccccEEEEEEECCCCccCCCCC
Confidence            89999999888899999999999999999999999999999999988765556789999999999999999999999999


Q ss_pred             EEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCc
Q 025895           90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL  169 (246)
Q Consensus        90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~  169 (246)
                      ||++.+..+|++|.+|..+..+.|.+.....+.|.. .+|..++...|.+.++....|+|+||+.+|...++++|+++++
T Consensus        82 rV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~g~~-~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~lP~~l~~  160 (368)
T TIGR02818        82 HVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLM-PDGTSRFSKDGQPIYHYMGCSTFSEYTVVPEISLAKINPAAPL  160 (368)
T ss_pred             EEEEcCCCCCCCChhhhCCCcccccCcccccccccc-cCCccccccCCCcccccccCccceeeEEechhheEECCCCCCH
Confidence            999999899999999999999999875432222322 1221112222222222223569999999999999999999999


Q ss_pred             hhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       170 ~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      ++++.+++++.|+|+++.+..+++++++|||+|+|++|++++|+|+.+|+.+|++++++++|++.++++|++.
T Consensus       161 ~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~  233 (368)
T TIGR02818       161 EEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATD  233 (368)
T ss_pred             HHhhhhcchhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCe
Confidence            9999999999999998877889999999999999999999999999999977999999999999999999973

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=100.00  E-value=4.5e-40  Score=292.70  Aligned_cols=235  Identities=69%  Similarity=1.164  Sum_probs=202.6

Q ss_pred             cceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCC
Q 025895            8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP   87 (246)
Q Consensus         8 ~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~   87 (246)
                      ++|||+++.+++++++++++|.|+|+++||+||+.+++||++|++.+.+..+...+|.++|||++|+|+++|+++++|++
T Consensus         1 ~~~ka~~~~~~~~~~~l~~~~~p~~~~~evlIkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~   80 (369)
T cd08301           1 ITCKAAVAWEAGKPLVIEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQTPLFPRILGHEAAGIVESVGEGVTDLKP   80 (369)
T ss_pred             CccEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEeeCchhHHHhcCCCCCCCCCcccccccceEEEEeCCCCCcccc
Confidence            48999999998888999999999999999999999999999999999887655567899999999999999999999999


Q ss_pred             CCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCC
Q 025895           88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA  167 (246)
Q Consensus        88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~  167 (246)
                      ||||++.+..+|++|.+|..+..+.|.+.......|....++..++...|...++..+.|+|+||+.++...++++|+++
T Consensus        81 GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~~  160 (369)
T cd08301          81 GDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMINDGKSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPEA  160 (369)
T ss_pred             CCEEEEccCCCCCCCchhcCCCcccCcCcccccccccccCCCccccccCCcceeeeeccccceeEEEEecccEEECCCCC
Confidence            99999999999999999999999999986543222322122222222233333333455799999999999999999999


Q ss_pred             CchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      ++++++.+.+.+.|+|+++.+..+++++++|||+|+|++|++++|+|+.+|+.+|++++++++|++.++++|++.
T Consensus       161 ~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~  235 (369)
T cd08301         161 PLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTE  235 (369)
T ss_pred             CHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCce
Confidence            999999999899999998877888999999999999999999999999999877999999999999999999873

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>PLN02740 Alcohol dehydrogenase-like

Probab=100.00  E-value=6.6e-40  Score=293.03  Aligned_cols=238  Identities=60%  Similarity=1.084  Sum_probs=199.4

Q ss_pred             CcccceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCC
Q 025895            5 GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVT   83 (246)
Q Consensus         5 ~~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~   83 (246)
                      +++++|||++++++++++.++|+|.|.|+++||+||+++++||++|++.+.|.... ..+|.++|||++|+|+++|++++
T Consensus         6 ~~~~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~   85 (381)
T PLN02740          6 GKVITCKAAVAWGPGEPLVMEEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENEAQRAYPRILGHEAAGIVESVGEGVE   85 (381)
T ss_pred             ccceeeEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEecChhhHHHhCCCCcccCCCCccccccceEEEEEeCCCCC
Confidence            35689999999999988999999999999999999999999999999999887532 35789999999999999999999


Q ss_pred             ccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCcccccc--CCcceeeccCCcceeeeEEeecCceE
Q 025895           84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSI--NGKPIYHFMGTSTFSQYTVVHDVSVA  161 (246)
Q Consensus        84 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~  161 (246)
                      .+++||||++.+..+|+.|.+|..+..+.|.+....+..+....+|...++.  .+...+.....|+|+||+.+|.+.++
T Consensus        86 ~~~vGdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~  165 (381)
T PLN02740         86 DLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSACVV  165 (381)
T ss_pred             cCCCCCEEEecCCCCCCCChhhcCCCcccccCccccccccccccCCCcccccccCCCcccccccCccceeEEEEehHHeE
Confidence            9999999999999999999999999999999865321110000111000000  00111112235799999999999999


Q ss_pred             EcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          162 KIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       162 ~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      ++|+++++++++.+.+++.|+|+++.+..+++++++|||+|+|++|++++|+|+.+|+.+|++++++++|++.++++|++
T Consensus       166 ~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~  245 (381)
T PLN02740        166 KIDPNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGIT  245 (381)
T ss_pred             ECCCCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCc
Confidence            99999999999999999999999877788999999999999999999999999999996699999999999999999997


Q ss_pred             c
Q 025895          242 S  242 (246)
Q Consensus       242 ~  242 (246)
                      .
T Consensus       246 ~  246 (381)
T PLN02740        246 D  246 (381)
T ss_pred             E
Confidence            3

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=100.00  E-value=1.6e-39  Score=289.26  Aligned_cols=234  Identities=76%  Similarity=1.237  Sum_probs=201.7

Q ss_pred             cceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCC
Q 025895            8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP   87 (246)
Q Consensus         8 ~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~   87 (246)
                      .+|||+++.+.+++++++++|.|.|+++||+||+++++||++|.+.+.+.++...+|.++|||++|+|+++|+++++|++
T Consensus         1 ~~~~a~~~~~~~~~~~~~~~~~P~~~~~eVlIrv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~v   80 (368)
T cd08300           1 ITCKAAVAWEAGKPLSIEEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPEGLFPVILGHEGAGIVESVGEGVTSVKP   80 (368)
T ss_pred             CcceEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEechhhHHHhcCCCccCCCCceeccceeEEEEEeCCCCccCCC
Confidence            47999999988888999999999999999999999999999999999887655568999999999999999999999999


Q ss_pred             CCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCC
Q 025895           88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA  167 (246)
Q Consensus        88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~  167 (246)
                      ||+|+..+..+|+.|.+|..++.+.|.+.......|.. .+|..++..+|.+.++..+.|+|+||+.++...++++|+++
T Consensus        81 GdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~g~~-~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~l  159 (368)
T cd08300          81 GDHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLM-PDGTSRFSCKGKPIYHFMGTSTFSEYTVVAEISVAKINPEA  159 (368)
T ss_pred             CCEEEEcCCCCCCCChhhcCCCcCcCCCcccccccccc-CCCccccccCCcccccccccccceeEEEEchhceEeCCCCC
Confidence            99999988899999999999999999875432222222 22222222233333333345799999999999999999999


Q ss_pred             CchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      ++++++.+.+++.++|+++.+..+++++++|||+|+|++|++++|+|+.+|+.+|++++++++|++.++++|++.
T Consensus       160 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~  234 (368)
T cd08300         160 PLDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATD  234 (368)
T ss_pred             ChhhhhhhccchhhhHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCE
Confidence            999999999999999998877888999999999999999999999999999967999999999999999999973

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=100.00  E-value=8.1e-39  Score=284.99  Aligned_cols=232  Identities=44%  Similarity=0.756  Sum_probs=193.7

Q ss_pred             eeeeEeecCC--------CCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCC
Q 025895           10 CKAAVAWEPN--------KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG   81 (246)
Q Consensus        10 ~ka~~~~~~~--------~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~   81 (246)
                      |||+++.+.|        +.++++++|.|.|+++||+||+.+++||++|++.+.+.++. .+|.++|||++|+|+++|++
T Consensus         1 mka~~~~~~g~~~~~~~~~~l~~~~~~~P~~~~~evlV~v~~~gi~~~D~~~~~g~~~~-~~p~i~GhE~~G~V~~vG~~   79 (371)
T cd08281           1 MRAAVLRETGAPTPYADSRPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRPR-PLPMALGHEAAGVVVEVGEG   79 (371)
T ss_pred             CcceEEEecccccccccCCCceEEEeecCCCCCCeEEEEEEEEeeCccchHhhcCCCCC-CCCccCCccceeEEEEeCCC
Confidence            7999999866        33899999999999999999999999999999999886543 56899999999999999999


Q ss_pred             CCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceE
Q 025895           82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVA  161 (246)
Q Consensus        82 ~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  161 (246)
                      ++++++||||++.+...|+.|.+|..|..+.|.+.......|.. .+|...+..++.......+.|+|+||+.+|...++
T Consensus        80 v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~g~G~~aey~~v~~~~~~  158 (371)
T cd08281          80 VTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTL-LSGGRRLRLRGGEINHHLGVSAFAEYAVVSRRSVV  158 (371)
T ss_pred             CCcCCCCCEEEEccCCCCCCCccccCCCcccccCcccccccccc-ccCcccccccCcccccccCcccceeeEEecccceE
Confidence            99999999999888889999999999999999876543222221 11111111111111111123699999999999999


Q ss_pred             EcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          162 KIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       162 ~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      ++|+++++++++.+.++..|||+++....+++++++|||.|+|++|++++|+|+.+|+++|++++.+++|++.++++|++
T Consensus       159 ~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~  238 (371)
T cd08281         159 KIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGAT  238 (371)
T ss_pred             ECCCCCChHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCc
Confidence            99999999999999989999999877888899999999999999999999999999996699999999999999999997


Q ss_pred             cc
Q 025895          242 SK  243 (246)
Q Consensus       242 ~~  243 (246)
                      ..
T Consensus       239 ~~  240 (371)
T cd08281         239 AT  240 (371)
T ss_pred             eE
Confidence            43

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PLN02827 Alcohol dehydrogenase-like

Probab=100.00  E-value=9e-38  Score=279.01  Aligned_cols=232  Identities=54%  Similarity=1.007  Sum_probs=191.6

Q ss_pred             cccceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCcc
Q 025895            6 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEV   85 (246)
Q Consensus         6 ~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~   85 (246)
                      +...|||+++.++++.++++|+|.|.|+++||+|||.+++||++|++.+.+..   .+|.++|||++|+|+++|+++++|
T Consensus         9 ~~~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlVkv~~~gic~sD~~~~~g~~---~~p~i~GhE~~G~V~~vG~~v~~~   85 (378)
T PLN02827          9 NVITCRAAVAWGAGEALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQA---LFPRIFGHEASGIVESIGEGVTEF   85 (378)
T ss_pred             ccceeEEEEEecCCCCceEEEeecCCCCCCEEEEEEEEEecChhHHHHhcCCC---CCCeeecccceEEEEEcCCCCccc
Confidence            34789999999988779999999999999999999999999999999887642   467899999999999999999999


Q ss_pred             CCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCC
Q 025895           86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP  165 (246)
Q Consensus        86 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~  165 (246)
                      ++||+|++.+...|++|.+|.++..++|.+.... ..|....+....+...|...+.....|+|+||+.+|...++++|+
T Consensus        86 ~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~G~~aeyv~v~~~~~~~iP~  164 (378)
T PLN02827         86 EKGDHVLTVFTGECGSCRHCISGKSNMCQVLGLE-RKGVMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDP  164 (378)
T ss_pred             CCCCEEEEecCCCCCCChhhhCcCcccccCcccc-ccccccCCCcccccccCcccccccccccceeeEEechhheEECCC
Confidence            9999999999889999999999999999874321 011100000000001111111111246999999999999999999


Q ss_pred             CCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       166 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      ++++++++.+.+++.++|+++....+++++++|||+|+|++|++++|+|+++|+..|++++++++|++.++++|++
T Consensus       165 ~l~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~  240 (378)
T PLN02827        165 LAPLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVT  240 (378)
T ss_pred             CCCHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCc
Confidence            9999999998888888888776778899999999999999999999999999996688999999999999999997

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=100.00  E-value=9.6e-38  Score=277.50  Aligned_cols=231  Identities=64%  Similarity=1.090  Sum_probs=199.3

Q ss_pred             cceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCC
Q 025895            8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP   87 (246)
Q Consensus         8 ~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~   87 (246)
                      ++|||+++.+.+++++++|+|.|.++++||+||++++++|++|++.+.+..+ ..+|.++|||++|+|+++|++++++++
T Consensus         1 ~~~ka~~~~~~~~~~~~~~~~~p~~~~~evlVkv~~~gi~~sD~~~~~g~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~~   79 (365)
T cd08277           1 IKCKAAVAWEAGKPLVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEGFKA-TLFPVILGHEGAGIVESVGEGVTNLKP   79 (365)
T ss_pred             CccEEEEEccCCCCcEEEEEECCCCCCCEEEEEEEEEeechhhHHHhcCCCC-CCCCeecccceeEEEEeeCCCCccCCC
Confidence            4689999998888899999999999999999999999999999999988654 457899999999999999999999999


Q ss_pred             CCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCC
Q 025895           88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA  167 (246)
Q Consensus        88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~  167 (246)
                      ||+|+..+..+|++|.+|..+..++|.+.... ..|.. .++...+...|...+...+.|+|+||+.++.+.++++|+++
T Consensus        80 GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~-~~g~~-~~~~~~~~~~~~~~~~~~~~g~~ae~~~v~~~~~~~lP~~l  157 (365)
T cd08277          80 GDKVIPLFIGQCGECSNCRSGKTNLCQKYRAN-ESGLM-PDGTSRFTCKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAA  157 (365)
T ss_pred             CCEEEECCCCCCCCCchhcCcCcccCcCcccc-ccccc-cCCccccccCCcccccccccccceeeEEEchhheEECCCCC
Confidence            99999988899999999999999999986532 12222 22222222233333333345799999999999999999999


Q ss_pred             CchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      ++++++.+.+++.|+|+++.+...++++++|||+|+|++|++++|+|+.+|+.+|++++++++|++.++++|++
T Consensus       158 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~  231 (365)
T cd08277         158 PLEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGAT  231 (365)
T ss_pred             CHHHhhHhcchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCC
Confidence            99999999999999999877788899999999999999999999999999997799999999999999999987

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=100.00  E-value=8.9e-38  Score=276.97  Aligned_cols=224  Identities=40%  Similarity=0.654  Sum_probs=192.1

Q ss_pred             ceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCC
Q 025895            9 TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (246)
Q Consensus         9 ~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~G   88 (246)
                      ||||+++.+++++++++|+|.|.|+++||+|||.+++||++|++.+.+..+. .+|.++|||++|+|+++|+++++|++|
T Consensus         1 ~mka~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~g~~~~-~~p~i~G~e~~G~V~~vG~~v~~~~~G   79 (358)
T TIGR03451         1 TVRGVIARSKGAPVELETIVVPDPGPGEVIVDIQACGVCHTDLHYREGGIND-EFPFLLGHEAAGVVEAVGEGVTDVAPG   79 (358)
T ss_pred             CcEEEEEccCCCCCEEEEEECCCCCCCeEEEEEEEEeecHHHHHHhcCCccc-cCCcccccceEEEEEEeCCCCcccCCC
Confidence            6999999999988999999999999999999999999999999998886532 578999999999999999999999999


Q ss_pred             CEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCC
Q 025895           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP  168 (246)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~  168 (246)
                      |+|++.+...|+.|.+|..+..+.|.+..... ......+|        .........|+|+||+.+|.+.++++|++++
T Consensus        80 drV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~-~~~~~~~g--------~~~~~~~~~G~~aey~~v~~~~~~~ip~~~~  150 (358)
T TIGR03451        80 DYVVLNWRAVCGQCRACKRGRPWYCFDTHNAT-QKMTLTDG--------TELSPALGIGAFAEKTLVHAGQCTKVDPAAD  150 (358)
T ss_pred             CEEEEccCCCCCCChHHhCcCcccCcCccccc-cccccccC--------cccccccccccccceEEEehhheEECCCCCC
Confidence            99999999999999999999999998532110 00000001        0000001246999999999999999999999


Q ss_pred             chhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       169 ~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      +++++.+.+.+.++|.++.+...++++++|||+|+|++|++++|+|+.+|+.+|++++++++|++.++++|++.
T Consensus       151 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~  224 (358)
T TIGR03451       151 PAAAGLLGCGVMAGLGAAVNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATH  224 (358)
T ss_pred             hhHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCce
Confidence            99999999899999987777788999999999999999999999999999966999999999999999999974

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=100.00  E-value=1.3e-37  Score=273.50  Aligned_cols=210  Identities=28%  Similarity=0.452  Sum_probs=187.7

Q ss_pred             eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCCccCCC
Q 025895           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQPG   88 (246)
Q Consensus        10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~~~~~G   88 (246)
                      |||+++.+++. ++++++|.|.|+++||+||+.+++||++|++.+.+.+.. ..+|.++|||++|+|+++|++++++++|
T Consensus         1 mka~~~~~~~~-l~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G   79 (339)
T cd08239           1 MRGAVFPGDRT-VELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVAVGPGVTHFRVG   79 (339)
T ss_pred             CeEEEEecCCc-eEEEecCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCccCCCCceeccCceEEEEEECCCCccCCCC
Confidence            79999998776 999999999999999999999999999999988766432 2357899999999999999999999999


Q ss_pred             CEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCC
Q 025895           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP  168 (246)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~  168 (246)
                      |+|+..+...|+.|.+|..++++.|.+...  ..|.. .+                  |+|++|+.++...++++|++++
T Consensus        80 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~--~~g~~-~~------------------G~~ae~~~v~~~~~~~~P~~~~  138 (339)
T cd08239          80 DRVMVYHYVGCGACRNCRRGWMQLCTSKRA--AYGWN-RD------------------GGHAEYMLVPEKTLIPLPDDLS  138 (339)
T ss_pred             CEEEECCCCCCCCChhhhCcCcccCcCccc--ccccC-CC------------------CcceeEEEechHHeEECCCCCC
Confidence            999999999999999999999999987542  12222 23                  4999999999999999999999


Q ss_pred             chhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       169 ~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      +++++.+.+++.|+|+++ ....++++++|||+|+|.+|++++|+|+.+|+++|++++++++|++.++++|++.
T Consensus       139 ~~~aa~l~~~~~ta~~~l-~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~  211 (339)
T cd08239         139 FADGALLLCGIGTAYHAL-RRVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADF  211 (339)
T ss_pred             HHHhhhhcchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCE
Confidence            999999999999999986 5577889999999999999999999999999954999999999999999999874

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=100.00  E-value=4.9e-37  Score=275.42  Aligned_cols=215  Identities=28%  Similarity=0.403  Sum_probs=180.2

Q ss_pred             ceeeeEeecCCCCeEEEEeecCCCC-------CCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCC
Q 025895            9 TCKAAVAWEPNKPLVIEDVQVAPPQ-------AGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG   81 (246)
Q Consensus         9 ~~ka~~~~~~~~~~~~~e~~~p~~~-------~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~   81 (246)
                      -|||+++.++++ ++++|+|.|.|+       +|||||||+++|||++|++.+.+..+. .+|.++|||++|+|+++|++
T Consensus         2 ~mka~v~~~~~~-~~~~e~~~P~~~~~~~~~~~~eVlVkv~a~gIcgsD~~~~~g~~~~-~~p~i~GhE~~G~V~~vG~~   79 (393)
T TIGR02819         2 GNRGVVYLGPGK-VEVQDIDYPKLELPDGRKCEHGVILKVVTTNICGSDQHMVRGRTTA-PTGLVLGHEITGEVIEKGRD   79 (393)
T ss_pred             CceEEEEecCCc-eeEEeccCCcccCCCccCCCCeEEEEEEEeeecHHHHHHHCCCCCC-CCCccccceeEEEEEEEcCc
Confidence            489999999887 999999999874       689999999999999999999876532 56899999999999999999


Q ss_pred             CCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCC---CCceecCCCccccccCCcceeeccCCcceeeeEEeecC
Q 025895           82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT---GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV  158 (246)
Q Consensus        82 ~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~---~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  158 (246)
                      +++|++||||++.+...|+.|.+|.+|+.++|.+.....   ..|.... +              ...|+|+||+.+|..
T Consensus        80 V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~-~--------------~~~G~~aey~~v~~~  144 (393)
T TIGR02819        80 VEFIKIGDIVSVPFNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDM-G--------------GWVGGQSEYVMVPYA  144 (393)
T ss_pred             cccccCCCEEEEecccCCCCChHHHCcCcccCcCCCCCCccceeccccc-C--------------CCCCceEEEEEechh
Confidence            999999999999999999999999999999999743110   0111000 0              013599999999964


Q ss_pred             --ceEEcCCCCCc----hhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHH
Q 025895          159 --SVAKIDPQAPL----DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF  232 (246)
Q Consensus       159 --~~~~ip~~~~~----~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~  232 (246)
                        +++++|++++.    ..++.+..++.++|+++ ...+++++++|||.|+|++|++++|+|+.+|++.+++++++++|+
T Consensus       145 ~~~l~~vP~~~~~~~~~~~~a~l~~~~~ta~~a~-~~~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~  223 (393)
T TIGR02819       145 DFNLLKFPDRDQALEKIRDLTMLSDIFPTGYHGA-VTAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARL  223 (393)
T ss_pred             hCceEECCCcccccccccceeeeccHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHH
Confidence              79999998753    34566777888999976 457899999999999999999999999999996677778889999


Q ss_pred             HHHhhcCCC
Q 025895          233 DRGMSCVSS  241 (246)
Q Consensus       233 ~~~~~lg~~  241 (246)
                      ++++++|++
T Consensus       224 ~~a~~~Ga~  232 (393)
T TIGR02819       224 AQARSFGCE  232 (393)
T ss_pred             HHHHHcCCe
Confidence            999999996

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=100.00  E-value=4e-37  Score=271.34  Aligned_cols=213  Identities=20%  Similarity=0.307  Sum_probs=180.5

Q ss_pred             ccceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhc-CCCC--CCCCCcccccceEEEEEEcCCCCC
Q 025895            7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWS-GKDP--EGLFPCILGHEAAGIVESVGEGVT   83 (246)
Q Consensus         7 ~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~-~~~~--~~~~p~v~G~e~vG~V~~vG~~~~   83 (246)
                      ...+|++++.++++ ++++++|.| +.++||||||.++|||++|++.+. +...  ...+|.++|||++|+|+++  +++
T Consensus         2 ~~~~~~~~~~~~~~-~~~~~~~~p-~~~~evlVkv~a~gic~sD~~~~~~g~~~~~~~~~p~v~GhE~~G~V~~v--~v~   77 (343)
T PRK09880          2 QVKTQSCVVAGKKD-VAVTEQEIE-WNNNGTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS--DSS   77 (343)
T ss_pred             cccceEEEEecCCc-eEEEecCCC-CCCCeEEEEEEEEEECccccHhhccCCcccccccCCcccCcccEEEEEEe--cCc
Confidence            46789999999988 999999987 689999999999999999999875 3322  2357899999999999999  678


Q ss_pred             ccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEc
Q 025895           84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI  163 (246)
Q Consensus        84 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i  163 (246)
                      +|++||+|++.+..+|+.|.+|..+..+.|.+...   .|....+              ....|+|+||++++.+.++++
T Consensus        78 ~~~vGdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~---~g~~~~~--------------~~~~G~~aey~~v~~~~~~~~  140 (343)
T PRK09880         78 GLKEGQTVAINPSKPCGHCKYCLSHNENQCTTMRF---FGSAMYF--------------PHVDGGFTRYKVVDTAQCIPY  140 (343)
T ss_pred             cCCCCCEEEECCCCCCcCChhhcCCChhhCCCcce---eeccccc--------------CCCCCceeeeEEechHHeEEC
Confidence            89999999999999999999999999999997553   1211000              011349999999999999999


Q ss_pred             CCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       164 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      |+++++++++ +..++.++|+++. .....++++|+|.|+|++|++++|+|+.+|+++|++++++++|+++++++|++.
T Consensus       141 P~~l~~~~aa-~~~~~~~a~~al~-~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~  217 (343)
T PRK09880        141 PEKADEKVMA-FAEPLAVAIHAAH-QAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADK  217 (343)
T ss_pred             CCCCCHHHHH-hhcHHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcE
Confidence            9999987665 3457788999874 455668999999999999999999999999977999999999999999999984

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=100.00  E-value=7.4e-37  Score=271.47  Aligned_cols=216  Identities=26%  Similarity=0.324  Sum_probs=184.3

Q ss_pred             ccceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccC
Q 025895            7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQ   86 (246)
Q Consensus         7 ~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~   86 (246)
                      +++++++.+.+..+++++.++|.|.|+++||+|||.+++||++|++.+.+.++...+|.++|||++|+|+++|+++++|+
T Consensus        10 ~~~~~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~   89 (360)
T PLN02586         10 PQKAFGWAARDPSGVLSPFHFSRRENGDEDVTVKILYCGVCHSDLHTIKNEWGFTRYPIVPGHEIVGIVTKLGKNVKKFK   89 (360)
T ss_pred             hhheeEEEecCCCCCceEEeecCCCCCCCeEEEEEEEecCChhhHhhhcCCcCCCCCCccCCcceeEEEEEECCCCCccC
Confidence            57778888888777799999999999999999999999999999999887655446789999999999999999999999


Q ss_pred             CCCEEEeeCC-CCCCCChhhhCCCCCCCCCccCCC----CCceecCCCccccccCCcceeeccCCcceeeeEEeecCceE
Q 025895           87 PGDHVIPCYQ-AECRECKFCKSGKTNLCGKVRGAT----GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVA  161 (246)
Q Consensus        87 ~Gd~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~----~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  161 (246)
                      +||+|++.+. .+|+.|.+|..|..+.|.+.....    ..|.. .+                  |+|+||+.+|.+.++
T Consensus        90 vGdrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~-~~------------------G~~aey~~v~~~~~~  150 (360)
T PLN02586         90 EGDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYNSIGHDGTK-NY------------------GGYSDMIVVDQHFVL  150 (360)
T ss_pred             CCCEEEEccccCcCCCCccccCCCcccCCCccccccccccCCCc-CC------------------CccceEEEEchHHee
Confidence            9999986554 579999999999999999754210    00111 12                  499999999999999


Q ss_pred             EcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhH-HHHHhhcCC
Q 025895          162 KIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK-FDRGMSCVS  240 (246)
Q Consensus       162 ~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~-~~~~~~lg~  240 (246)
                      ++|+++++++++.+.+...|+|+++......+++++|||.|+|++|++++|+|+.+|+ +|++++.++++ .+.++++|+
T Consensus       151 ~lP~~ls~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~~~~~~~Ga  229 (360)
T PLN02586        151 RFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKEDEAINRLGA  229 (360)
T ss_pred             eCCCCCCHHHhhhhhcchHHHHHHHHHhcccCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhhhHHHhCCC
Confidence            9999999999999999999999987666667899999999999999999999999999 78887777665 456678999


Q ss_pred             Cc
Q 025895          241 SS  242 (246)
Q Consensus       241 ~~  242 (246)
                      +.
T Consensus       230 ~~  231 (360)
T PLN02586        230 DS  231 (360)
T ss_pred             cE
Confidence            73

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=100.00  E-value=1.2e-36  Score=267.06  Aligned_cols=208  Identities=25%  Similarity=0.349  Sum_probs=183.5

Q ss_pred             eeEeecCCC----CeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCC
Q 025895           12 AAVAWEPNK----PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP   87 (246)
Q Consensus        12 a~~~~~~~~----~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~   87 (246)
                      |+.+.+++.    .++++++|.|.|+++||+||+++++||++|.+.+.|.++...+|.++|||++|+|+++|+++++|++
T Consensus         1 ~~~~~~~g~~~~~~l~~~~~p~P~~~~~evlVkv~~~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~   80 (329)
T TIGR02822         1 AWEVERPGPIEDGPLRFVERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPVHRPRVTPGHEVVGEVAGRGADAGGFAV   80 (329)
T ss_pred             CeeeecCCcCCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCCCCCCCccCCcceEEEEEEECCCCcccCC
Confidence            355665553    3899999999999999999999999999999999887654455789999999999999999999999


Q ss_pred             CCEEEeeCC-CCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCC
Q 025895           88 GDHVIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (246)
Q Consensus        88 Gd~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~  166 (246)
                      ||+|++.+. .+|+.|.+|..+..+.|.+...   .|.. .+|                  +|+||+.+|...++++|++
T Consensus        81 Gd~V~~~~~~~~c~~c~~c~~g~~~~c~~~~~---~g~~-~~G------------------~~aey~~v~~~~~~~lP~~  138 (329)
T TIGR02822        81 GDRVGIAWLRRTCGVCRYCRRGAENLCPASRY---TGWD-TDG------------------GYAEYTTVPAAFAYRLPTG  138 (329)
T ss_pred             CCEEEEcCccCcCCCChHHhCcCcccCCCccc---CCcc-cCC------------------cceeEEEeccccEEECCCC
Confidence            999987654 5799999999999999987653   2322 234                  9999999999999999999


Q ss_pred             CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCcc
Q 025895          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSSK  243 (246)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~~  243 (246)
                      +++++++.+.+.+.|||+++ ...+++++++|||+|+|++|++++|+|+.+|+ +|++++++++|+++++++|++..
T Consensus       139 ~~~~~aa~l~~~~~ta~~~~-~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~~Ga~~v  213 (329)
T TIGR02822       139 YDDVELAPLLCAGIIGYRAL-LRASLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALALGAASA  213 (329)
T ss_pred             CCHHHhHHHhccchHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHhCCcee
Confidence            99999999999999999987 45789999999999999999999999999999 79999999999999999999843

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=100.00  E-value=4e-36  Score=267.92  Aligned_cols=234  Identities=58%  Similarity=0.969  Sum_probs=204.0

Q ss_pred             cccceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCcc
Q 025895            6 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEV   85 (246)
Q Consensus         6 ~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~   85 (246)
                      ...+||++++..++++++++++|.|.+.++||+||+++++||++|.+.+.+... ..+|.++|||++|+|+++|++++.+
T Consensus         4 ~~~~~~a~~~~~~~~~~~l~~~p~p~~~~~~vlvkv~~~gi~~~D~~~~~g~~~-~~~p~v~G~e~~G~V~~vG~~v~~~   82 (373)
T cd08299           4 KVIKCKAAVLWEPKKPFSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLV-TPFPVILGHEAAGIVESVGEGVTTV   82 (373)
T ss_pred             ccceeEEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEcCcccHHHhcCCCC-CCCCccccccceEEEEEeCCCCccC
Confidence            346799999999888899999999999999999999999999999999988753 3578899999999999999999999


Q ss_pred             CCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCC
Q 025895           86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP  165 (246)
Q Consensus        86 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~  165 (246)
                      ++||+|++.+..+|++|.+|..++.+.|++.......|.. .++..+++.+|.+.++..+.|+|++|+.++.+.++++|+
T Consensus        83 ~~Gd~V~~~~~~~c~~c~~c~~~~~~~c~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~G~~~e~~~v~~~~~~~lP~  161 (373)
T cd08299          83 KPGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQGLM-QDGTSRFTCKGKPIHHFLGTSTFSEYTVVDEIAVAKIDA  161 (373)
T ss_pred             CCCCEEEECCCCCCCCChhhhCCCcccCcCcccccccccc-cCCccccccCCcccccccCCCcccceEEecccceeeCCC
Confidence            9999999988899999999999999999976532212332 333344445555555444568999999999999999999


Q ss_pred             CCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       166 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      ++++++++.+.+++.++|+++....+++++++|+|+|+|++|++++++|+.+|+.+|++++++++|++.++++|++
T Consensus       162 ~l~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~~lGa~  237 (373)
T cd08299         162 AAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKELGAT  237 (373)
T ss_pred             CCChHHhheeccchHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc
Confidence            9999999999999999999877888999999999999899999999999999987799999999999999999986

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=100.00  E-value=1.4e-36  Score=268.54  Aligned_cols=212  Identities=30%  Similarity=0.403  Sum_probs=174.7

Q ss_pred             eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCc-ccccceEEEEEEcCCCCCccCCC
Q 025895           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC-ILGHEAAGIVESVGEGVTEVQPG   88 (246)
Q Consensus        10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~-v~G~e~vG~V~~vG~~~~~~~~G   88 (246)
                      |++++++.++...++++.+.|.+.++||+|||.++|||++|++.+.+..+....|. ++|||++|+|+++| .++.+++|
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~p~~vlVkv~~~gICGSDlh~~~g~~~~~~~~~~i~GHE~~G~V~evG-~~~~~~~G   79 (350)
T COG1063           1 MKAAVVYVGGGDVRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFVPPGDIILGHEFVGEVVEVG-VVRGFKVG   79 (350)
T ss_pred             CceeEEEecCCccccccCCCCCCCCCeEEEEEEEEeEchhhhhhccCCCCCCCCCCcccCccceEEEEEec-cccCCCCC
Confidence            67777787776455888877778999999999999999999999999876666666 99999999999999 77789999


Q ss_pred             CEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceec-CCCccccccCCcceeeccCCcceeeeEEeecCc-eEEcCCC
Q 025895           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM-NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVS-VAKIDPQ  166 (246)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~-~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~ip~~  166 (246)
                      |||++.+..+|++|.+|..|..++|.+.+..+...... .+|                  +|+||+.+|.++ +..+|++
T Consensus        80 drVvv~~~~~Cg~C~~C~~G~~~~C~~~~~~g~~~~~~~~~G------------------~~aEyv~vp~~~~~~~~pd~  141 (350)
T COG1063          80 DRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGGIDG------------------GFAEYVRVPADFNLAKLPDG  141 (350)
T ss_pred             CEEEECCCcCCCCChhHhCcCcccCCCccccccccccCCCCC------------------ceEEEEEeccccCeecCCCC
Confidence            99999999999999999999999999654321111110 234                  999999999755 5555888


Q ss_pred             CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh-cCCC
Q 025895          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS-CVSS  241 (246)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~-lg~~  241 (246)
                      + ..+++++..++.++|++.......+++++|+|+|+|++|++++++++.+|+.+||+++.+++|++++++ +|++
T Consensus       142 ~-~~~~aal~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~  216 (350)
T COG1063         142 I-DEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD  216 (350)
T ss_pred             C-ChhhhhhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe
Confidence            7 455566666899997763445555666699999999999999999999999999999999999999999 6666

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=100.00  E-value=6.4e-36  Score=261.52  Aligned_cols=186  Identities=28%  Similarity=0.358  Sum_probs=168.6

Q ss_pred             eeeeEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCC-CCCCCCCcccccceEEEEEEcCCCCCccC
Q 025895           10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK-DPEGLFPCILGHEAAGIVESVGEGVTEVQ   86 (246)
Q Consensus        10 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~-~~~~~~p~v~G~e~vG~V~~vG~~~~~~~   86 (246)
                      ||++++++.++|  ++++|+|.|.|+++||+|||.+++||+.|...+.|. .+..++|.++|.|++|+|+++|++++.|+
T Consensus         1 mka~~~~~~g~~~~l~~~e~~~P~p~~geVlVrV~a~gvN~~D~~~r~G~~~~~~~~P~i~G~d~aG~V~avG~~V~~~~   80 (326)
T COG0604           1 MKAVVVEEFGGPEVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAVGSGVTGFK   80 (326)
T ss_pred             CeEEEEeccCCCceeEEEecCCCCCCCCeEEEEEEEeecChHHHHhccCCCCCCCCCCCcccceeEEEEEEeCCCCCCcC
Confidence            789999988877  889999999999999999999999999999999987 33446899999999999999999999999


Q ss_pred             CCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCC
Q 025895           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (246)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~  166 (246)
                      +||+|+..+. .|                           .                  .|+|+||..+|+..++++|++
T Consensus        81 ~GdrV~~~~~-~~---------------------------~------------------~G~~AEy~~v~a~~~~~~P~~  114 (326)
T COG0604          81 VGDRVAALGG-VG---------------------------R------------------DGGYAEYVVVPADWLVPLPDG  114 (326)
T ss_pred             CCCEEEEccC-CC---------------------------C------------------CCcceeEEEecHHHceeCCCC
Confidence            9999986530 00                           1                  249999999999999999999


Q ss_pred             CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      +|+++||++++++.|||+++++..+++++++|||+|+ |++|++++|+||++|+ .++++.++++|.++++++|||+
T Consensus       115 ls~~eAAal~~~~~TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGAd~  190 (326)
T COG0604         115 LSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGADH  190 (326)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCCCE
Confidence            9999999999999999999999899999999999986 9999999999999998 7777778888888999999983

>cd08230 glucose_DH Glucose dehydrogenase

Probab=100.00  E-value=1.3e-35  Score=262.88  Aligned_cols=210  Identities=24%  Similarity=0.305  Sum_probs=172.8

Q ss_pred             eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC---CCCCcccccceEEEEEEcCCCCCccC
Q 025895           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE---GLFPCILGHEAAGIVESVGEGVTEVQ   86 (246)
Q Consensus        10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~---~~~p~v~G~e~vG~V~~vG~~~~~~~   86 (246)
                      |||+++..++.+++++|+|.|+|+++||+|||++++||++|.+.+.|.++.   ..+|.++|||++|+|+++|++ ++|+
T Consensus         1 mka~~~~~~~~~l~~~~~p~p~~~~~evlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~i~G~e~~G~V~~vG~~-~~~~   79 (355)
T cd08230           1 MKAIAVKPGKPGVRVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVVEEVGDG-SGLS   79 (355)
T ss_pred             CceeEecCCCCCCeEEeCCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCCCCCCCCCeeeccccceEEEEecCC-CCCC
Confidence            688998865444999999999999999999999999999999999886532   246789999999999999999 8999


Q ss_pred             CCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCC
Q 025895           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (246)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~  166 (246)
                      +||||+..+...|++|.+|..++.+.|.+.... ..|....+                  |+|+||+.++.+.++++|++
T Consensus        80 vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~-~~g~~~~~------------------G~~aey~~~~~~~~~~~P~~  140 (355)
T cd08230          80 PGDLVVPTVRRPPGKCLNCRIGRPDFCETGEYT-ERGIKGLH------------------GFMREYFVDDPEYLVKVPPS  140 (355)
T ss_pred             CCCEEEeccccCCCcChhhhCcCcccCCCccee-ccCcCCCC------------------ccceeEEEeccccEEECCCC
Confidence            999999998889999999999999999864321 11221123                  49999999999999999999


Q ss_pred             CCchhhhhccccchhhhhhhh------hhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC---ChhHHHHHhh
Q 025895          167 APLDKVCLLGCGVPTGLGAVW------NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI---DPKKFDRGMS  237 (246)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~l~------~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~---~~~~~~~~~~  237 (246)
                      ++ +. +.+..++.+++.++.      ...+.+++++|+|+|+|++|++++|+||++|+ +|+++++   +++|++++++
T Consensus       141 ~~-~~-a~~~~p~~~~~~a~~~~~~~~~~~~~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~  217 (355)
T cd08230         141 LA-DV-GVLLEPLSVVEKAIEQAEAVQKRLPTWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEE  217 (355)
T ss_pred             CC-cc-eeecchHHHHHHHHHHHhhhhhhcccCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHH
Confidence            99 43 334445555444332      22335789999999999999999999999999 8999987   6889999999


Q ss_pred             cCCCc
Q 025895          238 CVSSS  242 (246)
Q Consensus       238 lg~~~  242 (246)
                      +|++.
T Consensus       218 ~Ga~~  222 (355)
T cd08230         218 LGATY  222 (355)
T ss_pred             cCCEE
Confidence            99973

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=5.2e-35  Score=260.88  Aligned_cols=211  Identities=27%  Similarity=0.313  Sum_probs=177.3

Q ss_pred             eeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCCCEE
Q 025895           12 AAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHV   91 (246)
Q Consensus        12 a~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd~V   91 (246)
                      ++++.+.++++++.+++.|.|+++||+|||.+++||++|++.+.|.+....+|.++|||++|+|+++|+++++|++||+|
T Consensus         9 ~~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~gic~sD~~~~~G~~~~~~~p~i~GhE~aG~Vv~vG~~v~~~~vGdrV   88 (375)
T PLN02178          9 GWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRV   88 (375)
T ss_pred             EEEEccCCCCceEEeecCCCCCCCeEEEEEEEEcCchHHHHHhcCCCCCCCCCcccCceeeEEEEEECCCCCccCCCCEE
Confidence            45555555569999999999999999999999999999999998865434568999999999999999999999999999


Q ss_pred             EeeCCC-CCCCChhhhCCCCCCCCCccCCCC----CceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCC
Q 025895           92 IPCYQA-ECRECKFCKSGKTNLCGKVRGATG----AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (246)
Q Consensus        92 ~~~~~~-~~~~c~~c~~~~~~~c~~~~~~~~----~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~  166 (246)
                      .+.+.. .|+.|.+|.+|..+.|.+......    .|.. .                  .|+|+||+.+|.+.++++|++
T Consensus        89 ~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~-~------------------~G~~aey~~v~~~~~~~lP~~  149 (375)
T PLN02178         89 GVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTR-N------------------QGGYSDVIVVDHRFVLSIPDG  149 (375)
T ss_pred             EEcCccCCCCCChhHhCcchhcCCCccccccccccCCCc-C------------------CCccccEEEEchHHeEECCCC
Confidence            876654 699999999999999997643100    0111 1                  349999999999999999999


Q ss_pred             CCchhhhhccccchhhhhhhhhhCC-CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh-HHHHHhhcCCCc
Q 025895          167 APLDKVCLLGCGVPTGLGAVWNTAK-VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK-KFDRGMSCVSSS  242 (246)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~l~~~~~-~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~-~~~~~~~lg~~~  242 (246)
                      +++++++.+.+...|+|+++..... .+++++|+|.|+|++|++++|+|+.+|+ +|++++.+++ +.+.++++|++.
T Consensus       150 ls~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~Vi~~~~~~~~~~~~a~~lGa~~  226 (375)
T PLN02178        150 LPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGL-RVTVISRSSEKEREAIDRLGADS  226 (375)
T ss_pred             CCHHHcchhhccchHHHHHHHHhCCCCCCCCEEEEEcccHHHHHHHHHHHHcCC-eEEEEeCChHHhHHHHHhCCCcE
Confidence            9999999999999999987644332 3689999999999999999999999999 7888887755 478888999974

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=7.7e-35  Score=258.23  Aligned_cols=225  Identities=24%  Similarity=0.266  Sum_probs=188.7

Q ss_pred             CCCCCcccceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCC
Q 025895            1 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGE   80 (246)
Q Consensus         1 m~~~~~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~   80 (246)
                      |.+-.....++|+++..++++++++++|.|+|+++||+||+.+++||++|++.+.+.+....+|.++|||++|+|+++|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~eVlVrv~a~gi~~~D~~~~~g~~~~~~~p~i~G~E~~G~Vv~vG~   80 (357)
T PLN02514          1 MGSLEAEKKTTGWAARDPSGHLSPYTYTLRKTGPEDVVIKVIYCGICHTDLHQIKNDLGMSNYPMVPGHEVVGEVVEVGS   80 (357)
T ss_pred             CCccCCCceEEEEEEecCCCCceEEeecCCCCCCCcEEEEEEEeccChHHHHhhcCCcCcCCCCccCCceeeEEEEEECC
Confidence            44444456699999999999999999999999999999999999999999999888664445789999999999999999


Q ss_pred             CCCccCCCCEEEeeCC-CCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCc
Q 025895           81 GVTEVQPGDHVIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVS  159 (246)
Q Consensus        81 ~~~~~~~Gd~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  159 (246)
                      ++++|++||+|++.+. ..|++|.+|..+..+.|.+.......++  ..|             ....|+|++|+.++...
T Consensus        81 ~v~~~~~Gd~V~~~~~~~~c~~C~~c~~g~~~~c~~~~~~~~~~~--~~g-------------~~~~G~~aey~~v~~~~  145 (357)
T PLN02514         81 DVSKFTVGDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSYNDVY--TDG-------------KPTQGGFASAMVVDQKF  145 (357)
T ss_pred             CcccccCCCEEEEcCccccCCCChhHhCCCcccCCCccccccccc--cCC-------------ccCCCccccEEEEchHH
Confidence            9999999999986554 3699999999999999987532100000  001             11235999999999999


Q ss_pred             eEEcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-hhc
Q 025895          160 VAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG-MSC  238 (246)
Q Consensus       160 ~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~-~~l  238 (246)
                      ++++|+++++++++.+++++.|+|+++......+++++|+|+|+|++|++++|+|+.+|+ ++++++.++++++.+ +++
T Consensus       146 ~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~-~vi~~~~~~~~~~~~~~~~  224 (357)
T PLN02514        146 VVKIPEGMAPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSDKKREEALEHL  224 (357)
T ss_pred             eEECCCCCCHHHhhhhhhhHHHHHHHHHHcccCCCCCeEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhc
Confidence            999999999999999999999999987665666899999999999999999999999999 788888888776554 569


Q ss_pred             CCC
Q 025895          239 VSS  241 (246)
Q Consensus       239 g~~  241 (246)
                      |++
T Consensus       225 Ga~  227 (357)
T PLN02514        225 GAD  227 (357)
T ss_pred             CCc
Confidence            987

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=100.00  E-value=9.5e-35  Score=256.76  Aligned_cols=205  Identities=31%  Similarity=0.467  Sum_probs=181.1

Q ss_pred             eEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCC-CCCCCCcccccceEEEEEEcCCCCCccCCCCEE
Q 025895           13 AVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD-PEGLFPCILGHEAAGIVESVGEGVTEVQPGDHV   91 (246)
Q Consensus        13 ~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~-~~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd~V   91 (246)
                      +++++++++++++|+|.|.++++||+||+.++++|++|++.+.+.. ....+|.++|||++|+|+++|+++..+ +||+|
T Consensus         2 ~~~~~~g~~~~~~~~p~P~~~~~evlVrv~~~gic~sD~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~-~GdrV   80 (349)
T TIGR03201         2 WMMTEPGKPMVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRTNHALPLALGHEISGRVIQAGAGAASW-IGKAV   80 (349)
T ss_pred             ceEecCCCCceEEeccCCCCCCCeEEEEEEEEeecccchHHHcCCCCccCCCCeeccccceEEEEEeCCCcCCC-CCCEE
Confidence            5677888779999999999999999999999999999999874433 233568999999999999999999877 99999


Q ss_pred             EeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCC------
Q 025895           92 IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP------  165 (246)
Q Consensus        92 ~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~------  165 (246)
                      ++.+..+|+.|.+|..+..+.|.+...   .|.. .+                  |+|+||+.+|.+.++++|+      
T Consensus        81 ~~~~~~~cg~c~~c~~g~~~~c~~~~~---~g~~-~~------------------G~~ae~~~v~~~~~~~ip~~~~~~~  138 (349)
T TIGR03201        81 IVPAVIPCGECELCKTGRGTICRAQKM---PGND-MQ------------------GGFASHIVVPAKGLCVVDEARLAAA  138 (349)
T ss_pred             EECCCCCCCCChhhhCcCcccCCCCCc---cCcC-CC------------------CcccceEEechHHeEECCccccccc
Confidence            999999999999999999999986543   2221 23                  4999999999999999999      


Q ss_pred             CCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       166 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      +++++.++.+.+++.++|+++. ...++++++|+|+|+|++|++++|+|+.+|+ +|++++++++|++.++++|++.
T Consensus       139 ~~~~~~~a~~~~~~~ta~~a~~-~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~~Ga~~  213 (349)
T TIGR03201       139 GLPLEHVSVVADAVTTPYQAAV-QAGLKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKGFGADL  213 (349)
T ss_pred             CCCHHHhhhhcchHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHhCCce
Confidence            8999999988889999999764 5788999999999999999999999999999 8999999999999999999973

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=100.00  E-value=6.8e-34  Score=252.81  Aligned_cols=231  Identities=59%  Similarity=1.032  Sum_probs=206.6

Q ss_pred             eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCCC
Q 025895           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (246)
Q Consensus        10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd   89 (246)
                      +||+++.+.+++++++++|.|.+++++|+||+.++++|+.|++.+.+... ..+|.++|||++|+|+++|++++.+++||
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~p~~~~~~vlv~v~~~~i~~~d~~~~~g~~~-~~~~~i~g~e~~G~V~~vG~~v~~~~~Gd   79 (365)
T cd05279           1 CKAAVLWEKGKPLSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLP-TPLPVILGHEGAGIVESIGPGVTTLKPGD   79 (365)
T ss_pred             CceeEEecCCCCcEEEEeecCCCCCCeEEEEEEEeeecchhHHHhcCCCC-CCCCcccccceeEEEEEeCCCcccCCCCC
Confidence            47899998887799999999999999999999999999999998887654 34678999999999999999999999999


Q ss_pred             EEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCc
Q 025895           90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL  169 (246)
Q Consensus        90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~  169 (246)
                      +|+..+..+|++|.+|..+..+.|......+..|.. .+|..++.-+|...++..+.|+|++|+.++.+.++++|+++++
T Consensus        80 ~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~lP~~~~~  158 (365)
T cd05279          80 KVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLM-SDGTSRFTCKGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAPL  158 (365)
T ss_pred             EEEEcCCCCCCCChhhcCCCcccCCCcccccccccc-cCCcceeeccCCccccccccccccceEEecCCceEECCCCCCH
Confidence            999998899999999999999999988776666655 5566666666766666667789999999999999999999999


Q ss_pred             hhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       170 ~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      ++++.+.+++.++|+++.....++++++|||+|+|++|++++++|+.+|+..|++++++++|++.++++|++.
T Consensus       159 ~~a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~  231 (365)
T cd05279         159 EKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATE  231 (365)
T ss_pred             HHhhHhccchhHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCe
Confidence            9999999899999998878888999999999988999999999999999966888888999999999999863

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=100.00  E-value=5.2e-34  Score=251.43  Aligned_cols=203  Identities=16%  Similarity=0.159  Sum_probs=167.3

Q ss_pred             ceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC----CCCCcccccceEEEEEEcCCCCCc
Q 025895            9 TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE----GLFPCILGHEAAGIVESVGEGVTE   84 (246)
Q Consensus         9 ~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~----~~~p~v~G~e~vG~V~~vG~~~~~   84 (246)
                      ..|+++++++++ ++++|.|.|. +++||+|||+++|||++|++++.|.+..    ..+|.++|||++|+|+++|.+  .
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~P~-~~~eVlVkv~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~g~~--~   77 (341)
T cd08237           2 INQVYRLVRPKF-FEVTYEEENL-REDWVIVRPTYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSDPTG--T   77 (341)
T ss_pred             cccceEEeccce-EEEeecCCCC-CCCeEEEEEEEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEeeCCC--c
Confidence            468899999987 9999999995 9999999999999999999999886532    257999999999999998864  6


Q ss_pred             cCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcC
Q 025895           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (246)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip  164 (246)
                      |++||||.+.+...|+.| .|  ...+.|.+...   .|.. .+|                  +|+||+.+|.+.++++|
T Consensus        78 ~~vGdrV~~~~~~~~~~~-~~--~~~~~c~~~~~---~g~~-~~G------------------~~aey~~v~~~~~~~vP  132 (341)
T cd08237          78 YKVGTKVVMVPNTPVEKD-EI--IPENYLPSSRF---RSSG-YDG------------------FMQDYVFLPPDRLVKLP  132 (341)
T ss_pred             cCCCCEEEECCCCCchhc-cc--chhccCCCcce---eEec-CCC------------------ceEEEEEEchHHeEECC
Confidence            999999999887777743 45  34567765432   1211 234                  89999999999999999


Q ss_pred             CCCCchhhhhccccchhhhhhhhh--hCCCCCCCEEEEECCCHHHHHHHHHHHH-cCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          165 PQAPLDKVCLLGCGVPTGLGAVWN--TAKVEPGSIVAVFGLGTVGLAVAEGAKA-AGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~l~~--~~~~~~~~~VlI~Gag~~G~~ai~~a~~-~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      +++++++|+.+ .++.++|+++..  ...++++++|||+|+|++|++++|+++. +|..+|++++++++|++.+++++++
T Consensus       133 ~~l~~~~aa~~-~~~~~a~~a~~~~~~~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~  211 (341)
T cd08237         133 DNVDPEVAAFT-ELVSVGVHAISRFEQIAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADET  211 (341)
T ss_pred             CCCChHHhhhh-chHHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCce
Confidence            99999987755 477888887643  3456889999999999999999999986 6655899999999999999887665

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=9.2e-34  Score=250.08  Aligned_cols=207  Identities=28%  Similarity=0.420  Sum_probs=177.8

Q ss_pred             eeeeEeecCCCCeEEEEeecCCC-CCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCC
Q 025895           10 CKAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (246)
Q Consensus        10 ~ka~~~~~~~~~~~~~e~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~G   88 (246)
                      |||++++++++ ++++|+|.|.| .++||+|||.++++|++|...+..... ..+|.++|||++|+|+++|+++++|++|
T Consensus         1 Mka~~~~~~~~-~~~~~~~~P~~~~~~evlV~v~~~gi~~~D~~~~~~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~vG   78 (347)
T PRK10309          1 MKSVVNDTDGI-VRVAESPIPEIKHQDDVLVKVASSGLCGSDIPRIFKNGA-HYYPITLGHEFSGYVEAVGSGVDDLHPG   78 (347)
T ss_pred             CceEEEeCCCc-eEEEECCCCCCCCCCEEEEEEEEEEEchhcHHHHhCCCC-CCCCcccccceEEEEEEeCCCCCCCCCC
Confidence            78999999886 99999999998 599999999999999999875432211 1357899999999999999999999999


Q ss_pred             CEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCC
Q 025895           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP  168 (246)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~  168 (246)
                      |+|++.+..+|+.|.+|..|..+.|.+...   .|.. .+                  |+|++|+.++.+.++++|++++
T Consensus        79 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~---~g~~-~~------------------G~~aey~~v~~~~~~~lP~~~s  136 (347)
T PRK10309         79 DAVACVPLLPCFTCPECLRGFYSLCAKYDF---IGSR-RD------------------GGNAEYIVVKRKNLFALPTDMP  136 (347)
T ss_pred             CEEEECCCcCCCCCcchhCcCcccCCCcce---eccC-CC------------------CccceeEEeehHHeEECcCCCC
Confidence            999999999999999999999999986432   2211 23                  4999999999999999999999


Q ss_pred             chhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       169 ~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      +++++.+. .+.++|+++ ....++++++|+|+|+|++|++++|+|+.+|++.|++++++++|++.++++|++.
T Consensus       137 ~~~aa~~~-~~~~~~~~~-~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~  208 (347)
T PRK10309        137 IEDGAFIE-PITVGLHAF-HLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQ  208 (347)
T ss_pred             HHHhhhhh-HHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCce
Confidence            99988763 455577764 5677889999999999999999999999999955899999999999999999873

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=100.00  E-value=3e-33  Score=247.94  Aligned_cols=217  Identities=29%  Similarity=0.451  Sum_probs=188.9

Q ss_pred             eeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCc------
Q 025895           11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTE------   84 (246)
Q Consensus        11 ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~------   84 (246)
                      ||+++.++++.++++++|.|.|+++||+||+.++++|+.|.....|.++...+|.++|||++|+|+++|++++.      
T Consensus         2 ka~~~~~~~~~l~~~~~~~p~~~~~evlV~v~a~~l~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~~~~   81 (361)
T cd08231           2 RAAVLTGPGKPLEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPRVPLPIILGHEGVGRVVALGGGVTTDVAGEP   81 (361)
T ss_pred             eEEEEcCCCCCCEEEeccCCCCCCCeEEEEEEEEeecCccHHHhcCCCCCCCCCcccccCCceEEEEeCCCccccccCCc
Confidence            78999998877999999999999999999999999999999988887653467889999999999999999986      


Q ss_pred             cCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecC-ceEEc
Q 025895           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV-SVAKI  163 (246)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~i  163 (246)
                      |++||+|+..+..+|+.|.+|..+..+.|.+.+..   |.....+            .....|+|++|+.++.+ .++++
T Consensus        82 ~~~Gd~V~~~~~~~~~~c~~~~~~~~~~c~~~~~~---~~~~~~~------------~~~~~g~~a~~~~v~~~~~~~~l  146 (361)
T cd08231          82 LKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKKY---GHEASCD------------DPHLSGGYAEHIYLPPGTAIVRV  146 (361)
T ss_pred             cCCCCEEEEcccCCCCCChhHhCcCccccccchhc---ccccccc------------CCCCCcccceEEEecCCCceEEC
Confidence            99999999999999999999999999999976542   2210100            00123599999999986 79999


Q ss_pred             CCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       164 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      |+++++++++.+++++.|||+++......+++++|||+|+|.+|++++++|+.+|+++|+++++++++.++++++|++.
T Consensus       147 P~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~  225 (361)
T cd08231         147 PDNVPDEVAAPANCALATVLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADA  225 (361)
T ss_pred             CCCCCHHHHHHhcCHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCe
Confidence            9999999999888999999998877666679999999999999999999999999978999999999999999999873

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=100.00  E-value=4.4e-33  Score=247.57  Aligned_cols=232  Identities=41%  Similarity=0.721  Sum_probs=192.4

Q ss_pred             cceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCC
Q 025895            8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP   87 (246)
Q Consensus         8 ~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~   87 (246)
                      ++|||+++.++++++++++.|.|.+.+++|+||+.++++|++|+..+.+.++ ..+|.++|||++|+|+++|+++.++++
T Consensus         1 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~a~gi~~~d~~~~~g~~~-~~~p~v~G~e~~G~V~~vG~~v~~~~~   79 (365)
T cd08278           1 MKTTAAVVREPGGPFVLEDVELDDPRPDEVLVRIVATGICHTDLVVRDGGLP-TPLPAVLGHEGAGVVEAVGSAVTGLKP   79 (365)
T ss_pred             CccEEeeeccCCCcceEEEeecCCCCCCeEEEEEEEeecCcccHHHhcCCCC-CCCCcccccceeEEEEEeCCCcccCCC
Confidence            5799999999877799999999999999999999999999999999888654 346789999999999999999999999


Q ss_pred             CCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccc-cccCCccee-eccCCcceeeeEEeecCceEEcCC
Q 025895           88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSR-FSINGKPIY-HFMGTSTFSQYTVVHDVSVAKIDP  165 (246)
Q Consensus        88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~-~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~ip~  165 (246)
                      ||+|++.+. .|++|.+|..+..+.|.+.......|.. .+|-.- ....|.+.+ +....|+|++|+.++.+.++++|+
T Consensus        80 Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~iP~  157 (365)
T cd08278          80 GDHVVLSFA-SCGECANCLSGHPAYCENFFPLNFSGRR-PDGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVDK  157 (365)
T ss_pred             CCEEEEccc-CCCCChHHhCCCcccccCcccccccccc-cCCcccccccCCcccccccccccceeeEEEecchhEEECCC
Confidence            999998764 8999999999999999865432111211 111000 000000000 022356999999999999999999


Q ss_pred             CCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       166 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      ++++++++.+++++.+|+.++.....++++++|+|+|+|.+|++++++|+++|+..+++++++++|.+.++++|++.
T Consensus       158 ~~s~~~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~  234 (365)
T cd08278         158 DVPLELLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATH  234 (365)
T ss_pred             CCCHHHhhhhcchhhhhhHHHhhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcE
Confidence            99999999999999999998878888999999999988999999999999999977999999999999999999873

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>PRK10083 putative oxidoreductase; Provisional

Probab=100.00  E-value=6.2e-33  Score=243.60  Aligned_cols=208  Identities=26%  Similarity=0.445  Sum_probs=183.4

Q ss_pred             eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCCC
Q 025895           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (246)
Q Consensus        10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd   89 (246)
                      |||+++.+++. ++++++|.|.|++++|+||+.+++||++|+..+.+..+...+|.++|||++|+|+++|++++.+++||
T Consensus         1 m~a~~~~~~~~-~~~~~~~~p~~~~~~vlV~v~~~gi~~~d~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd   79 (339)
T PRK10083          1 MKSIVIEKPNS-LAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHEFFGVIDAVGEGVDAARIGE   79 (339)
T ss_pred             CeEEEEecCCe-eEEEeccCCCCCCCeEEEEEEEEEEcccchHHHcCCCCcCCCCcccccceEEEEEEECCCCccCCCCC
Confidence            68999998886 99999999999999999999999999999998888765446789999999999999999999999999


Q ss_pred             EEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCc
Q 025895           90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL  169 (246)
Q Consensus        90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~  169 (246)
                      +|++.+...|+.|.+|..++.++|.+...   .++. .                  .|+|++|+.++...++++|+++++
T Consensus        80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~------------------~g~~~~~~~~~~~~~~~ip~~~~~  137 (339)
T PRK10083         80 RVAVDPVISCGHCYPCSIGKPNVCTSLVV---LGVH-R------------------DGGFSEYAVVPAKNAHRIPDAIAD  137 (339)
T ss_pred             EEEEccccCCCCCccccCcCcccCCCCce---EEEc-c------------------CCcceeeEEechHHeEECcCCCCH
Confidence            99999999999999999999999986542   1211 1                  248999999999999999999999


Q ss_pred             hhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHH-cCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKA-AGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       170 ~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~-~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      +.++ +...+.++|. +....+++++++|+|+|+|.+|++++|+|+. +|+..+++++++++|+++++++|++.
T Consensus       138 ~~a~-~~~~~~~a~~-~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~  209 (339)
T PRK10083        138 QYAV-MVEPFTIAAN-VTGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADW  209 (339)
T ss_pred             HHHh-hhchHHHHHH-HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcE
Confidence            8876 4457777885 5577889999999999999999999999996 69977889999999999999999974

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=100.00  E-value=8.9e-33  Score=244.05  Aligned_cols=209  Identities=30%  Similarity=0.481  Sum_probs=182.0

Q ss_pred             eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCC---C--------CCCCCcccccceEEEEEEc
Q 025895           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD---P--------EGLFPCILGHEAAGIVESV   78 (246)
Q Consensus        10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~---~--------~~~~p~v~G~e~vG~V~~v   78 (246)
                      |||+++.++++ ++++++|.|+|+++||+||+.++++|++|...+.+..   +        ...+|.++|||++|+|+++
T Consensus         1 mka~~~~~~~~-l~~~~~~~p~~~~~evlV~v~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~v   79 (351)
T cd08233           1 MKAARYHGRKD-IRVEEVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGVVVEV   79 (351)
T ss_pred             CceEEEecCCc-eEEEeccCCCCCCCeEEEEEEEEEECccchHhhcCCCccccccccccccccCCCceecccceEEEEEe
Confidence            78999998876 9999999999999999999999999999987665321   1        1136889999999999999


Q ss_pred             CCCCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecC
Q 025895           79 GEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV  158 (246)
Q Consensus        79 G~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  158 (246)
                      |++++.+++||+|...+..+|+.|.+|..+..+.|.+...   .|....+                  |+|++|+.++..
T Consensus        80 G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~------------------g~~a~~~~~~~~  138 (351)
T cd08233          80 GSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGF---IGLGGGG------------------GGFAEYVVVPAY  138 (351)
T ss_pred             CCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCCce---eccCCCC------------------CceeeEEEechH
Confidence            9999999999999999988999999999999999986432   2211112                  499999999999


Q ss_pred             ceEEcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhc
Q 025895          159 SVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSC  238 (246)
Q Consensus       159 ~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~l  238 (246)
                      .++++|+++++++++.+ .+..++|+++ ...+++++++|+|+|+|.+|++++|+|+.+|+.+|+++++++++.+.++++
T Consensus       139 ~~~~lP~~~~~~~aa~~-~~~~ta~~~l-~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~  216 (351)
T cd08233         139 HVHKLPDNVPLEEAALV-EPLAVAWHAV-RRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL  216 (351)
T ss_pred             HeEECcCCCCHHHhhhc-cHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh
Confidence            99999999999988776 5778899987 778899999999999999999999999999997899999999999999999


Q ss_pred             CCCc
Q 025895          239 VSSS  242 (246)
Q Consensus       239 g~~~  242 (246)
                      |++.
T Consensus       217 ga~~  220 (351)
T cd08233         217 GATI  220 (351)
T ss_pred             CCCE
Confidence            9873

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=1.4e-32  Score=241.30  Aligned_cols=209  Identities=30%  Similarity=0.488  Sum_probs=186.5

Q ss_pred             eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCCC
Q 025895           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (246)
Q Consensus        10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd   89 (246)
                      |||+++++++++++++++|.|.+++++|+||+.++++|++|...+.+..+...+|.++|||++|+|+++|+++.++++||
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd   80 (333)
T cd08296           1 YKAVQVTEPGGPLELVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPGLSYPRVPGHEVVGRIDAVGEGVSRWKVGD   80 (333)
T ss_pred             CeEEEEccCCCCceEEeccCCCCCCCEEEEEEEEEecchHHHHHHhCCCCCCCCCcccCcceeEEEEEECCCCccCCCCC
Confidence            79999999966699999999999999999999999999999998888654445688999999999999999999999999


Q ss_pred             EEEeeC-CCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCC
Q 025895           90 HVIPCY-QAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP  168 (246)
Q Consensus        90 ~V~~~~-~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~  168 (246)
                      +|++.+ ...|++|.+|..|..+.|.+...   .|+. .+|                  +|++|+.++...++++|++++
T Consensus        81 ~V~~~~~~~~~~~~~~~~~g~~~~c~~~~~---~~~~-~~g------------------~~a~~~~v~~~~~~~lp~~~~  138 (333)
T cd08296          81 RVGVGWHGGHCGTCDACRRGDFVHCENGKV---TGVT-RDG------------------GYAEYMLAPAEALARIPDDLD  138 (333)
T ss_pred             EEEeccccCCCCCChhhhCcCcccCCCCCc---cCcc-cCC------------------cceeEEEEchhheEeCCCCCC
Confidence            998754 46899999999999999997653   2322 233                  899999999999999999999


Q ss_pred             chhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       169 ~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      +++++.+++.+.++|+++.. ..+.++++|||+|+|.+|++++++|+.+|+ +|+++++++++++.++++|++.
T Consensus       139 ~~~aa~l~~~~~ta~~~~~~-~~~~~~~~vlV~g~g~iG~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~  210 (333)
T cd08296         139 AAEAAPLLCAGVTTFNALRN-SGAKPGDLVAVQGIGGLGHLAVQYAAKMGF-RTVAISRGSDKADLARKLGAHH  210 (333)
T ss_pred             HHHhhhhhhhhHHHHHHHHh-cCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcCCcE
Confidence            99999999999999998754 589999999999999999999999999999 8999999999999999999863

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=100.00  E-value=1.6e-32  Score=242.39  Aligned_cols=211  Identities=26%  Similarity=0.365  Sum_probs=185.8

Q ss_pred             eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCCC
Q 025895           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (246)
Q Consensus        10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd   89 (246)
                      |||++++++++ ++++++|.|.++++||+||+.++++|++|++.+.+.+....+|.++|||++|+|+++|++++++++||
T Consensus         1 mka~~~~~~~~-~~l~~~~~p~~~~~evlIkv~a~~i~~~d~~~~~g~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd   79 (351)
T cd08285           1 MKAFAMLGIGK-VGWIEKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPGERHGMILGHEAVGVVEEVGSEVKDFKPGD   79 (351)
T ss_pred             CceEEEccCCc-cEEEECCCCCCCCCeEEEEEEEEEechhhHHHhcCCCCCCCCCcccCcceEEEEEEecCCcCccCCCC
Confidence            79999999887 99999999999999999999999999999998877655446689999999999999999999999999


Q ss_pred             EEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecC--ceEEcCCCC
Q 025895           90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQA  167 (246)
Q Consensus        90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~ip~~~  167 (246)
                      +|+..+..+|+.|..|..++.+.|.+....  .+..                 ....|+|++|+.++..  .++++|+++
T Consensus        80 ~V~~~~~~~~~~c~~c~~g~~~~~~~~~~~--~~~~-----------------~~~~g~~~~y~~v~~~~~~~~~lP~~~  140 (351)
T cd08285          80 RVIVPAITPDWRSVAAQRGYPSQSGGMLGG--WKFS-----------------NFKDGVFAEYFHVNDADANLAPLPDGL  140 (351)
T ss_pred             EEEEcCcCCCCCCHHHHCcCcccCcCCCCC--cccc-----------------CCCCcceeEEEEcchhhCceEECCCCC
Confidence            999988889999999999999999864210  0000                 0123499999999974  899999999


Q ss_pred             CchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      ++++++.++..+.|+|+++ ....++++++|||+|+|.+|++++|+|+.+|+..+++++++++|+++++++|++
T Consensus       141 ~~~~aa~~~~~~~ta~~~~-~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~  213 (351)
T cd08285         141 TDEQAVMLPDMMSTGFHGA-ELANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGAT  213 (351)
T ss_pred             CHHHhhhhccchhhHHHHH-HccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCc
Confidence            9999999988999999974 678899999999998899999999999999997799999999999999999986

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=100.00  E-value=1.4e-31  Score=235.49  Aligned_cols=211  Identities=30%  Similarity=0.477  Sum_probs=187.2

Q ss_pred             eeeeEeecCCCCeEEEEeecCCC-CCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCC
Q 025895           10 CKAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (246)
Q Consensus        10 ~ka~~~~~~~~~~~~~e~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~G   88 (246)
                      ||++++.++++ +++.+.|.|.| .+++|+||+.++++|+.|+..+.+.++..++|.++|+|++|+|+++|++++++++|
T Consensus         1 ~ka~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~G   79 (347)
T cd05278           1 MKALVYLGPGK-IGLEEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVPGAKHGMILGHEFVGEVVEVGSDVKRLKPG   79 (347)
T ss_pred             CceEEEecCCc-eEEEEcCCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCCCCCCceeccceEEEEEEECCCccccCCC
Confidence            68999998887 99999999999 99999999999999999999988877655678999999999999999999999999


Q ss_pred             CEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecC--ceEEcCCC
Q 025895           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQ  166 (246)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~ip~~  166 (246)
                      |+|+..+...|+.|.+|..+...+|.+.......+.                   ...|+|++|++++.+  .++++|++
T Consensus        80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~g~~~~~~~v~~~~~~~~~lP~~  140 (347)
T cd05278          80 DRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGN-------------------RIDGGQAEYVRVPYADMNLAKIPDG  140 (347)
T ss_pred             CEEEecCCCCCCCChhHhCcCcccCcCCCccccccc-------------------CCCCeeeEEEEecchhCeEEECCCC
Confidence            999999999999999999999999987553211111                   123499999999987  89999999


Q ss_pred             CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      +++++++.+++++.|||+++ ...+++++++|||.|+|.+|++++|+|+.+|+..++++++++++.+.++++|++
T Consensus       141 ~~~~~aa~l~~~~~ta~~~~-~~~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~  214 (347)
T cd05278         141 LPDEDALMLSDILPTGFHGA-ELAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGAT  214 (347)
T ss_pred             CCHHHHhhhcchhhheeehh-hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCc
Confidence            99999999999999999986 677899999999988899999999999999965788998999999999999876

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=100.00  E-value=1.7e-31  Score=239.09  Aligned_cols=224  Identities=31%  Similarity=0.412  Sum_probs=187.0

Q ss_pred             eeeeEeecCCCCeEEEEeecCCC-CCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCC
Q 025895           10 CKAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (246)
Q Consensus        10 ~ka~~~~~~~~~~~~~e~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~G   88 (246)
                      |||++++++++ ++++++|.|.| ++++|+||+.+++||++|...+.|.++..++|.++|||++|+|+++|+++.++++|
T Consensus         1 m~a~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G   79 (386)
T cd08283           1 MKALVWHGKGD-VRVEEVPDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPGMKKGDILGHEFMGVVEEVGPEVRNLKVG   79 (386)
T ss_pred             CeeEEEecCCC-ceEEeCCCCCCCCCCeEEEEEEEEecchhhhhhhcCCCCCCCCCccccccceEEEEEeCCCCCCCCCC
Confidence            78999998866 99999999998 59999999999999999999998877655678999999999999999999999999


Q ss_pred             CEEEeeCCCCCCCChhhhCCCCCCCCCccCCC-CCceecCCCccccccCCc-ceeeccCCcceeeeEEeecC--ceEEcC
Q 025895           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGAT-GAGVMMNDRKSRFSINGK-PIYHFMGTSTFSQYTVVHDV--SVAKID  164 (246)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~-~~g~~~~~g~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~--~~~~ip  164 (246)
                      |+|+..+...|++|.+|..+..++|.+..... ..++   +|....++.|. ... ....|+|++|+.++.+  .++++|
T Consensus        80 d~V~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~g~~~~~~~v~~~~~~~~~lp  155 (386)
T cd08283          80 DRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAKL---YGHAGAGIFGYSHLT-GGYAGGQAEYVRVPFADVGPFKIP  155 (386)
T ss_pred             CEEEEcCcCCCCCChhhcCCCcccCCCcccccccccc---ccccccccccccccc-CCCCCeeEEEEEcccccCeEEECC
Confidence            99999988899999999999999998754321 0000   00000000000 000 0124599999999987  899999


Q ss_pred             CCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcC
Q 025895          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCV  239 (246)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg  239 (246)
                      +++++++++.+++.+.++|+++ ....+.++++|||+|+|.+|++++++|+.+|+.+++++++++++++.+++++
T Consensus       156 ~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~  229 (386)
T cd08283         156 DDLSDEKALFLSDILPTGYHAA-ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL  229 (386)
T ss_pred             CCCCHHHHhhhccchhhhHHHH-hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC
Confidence            9999999999999999999987 7788999999999988999999999999999856999999999999999883

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=100.00  E-value=1.5e-31  Score=234.73  Aligned_cols=209  Identities=31%  Similarity=0.463  Sum_probs=187.6

Q ss_pred             eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCC---CCCCCcccccceEEEEEEcCCCCCccC
Q 025895           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGEGVTEVQ   86 (246)
Q Consensus        10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~---~~~~p~v~G~e~vG~V~~vG~~~~~~~   86 (246)
                      ||++++.+++.++++.+.+.|.+++++|+||+.++++|+.|+..+.+.+.   ...+|.++|+|++|+|+++|+++.+++
T Consensus         1 ~ka~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~   80 (340)
T cd05284           1 MKAARLYEYGKPLRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGVDGLK   80 (340)
T ss_pred             CeeeEeccCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCcccccCCCCeecccceeEEEEEeCCCCCcCc
Confidence            68999998877799999999999999999999999999999998877654   235688999999999999999999999


Q ss_pred             CCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCC
Q 025895           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (246)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~  166 (246)
                      +||+|+..+...|+.|.+|..+..++|.+...   .|+. .+|                  +|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~g------------------~~~~~~~v~~~~~~~~P~~  138 (340)
T cd05284          81 EGDPVVVHPPWGCGTCRYCRRGEENYCENARF---PGIG-TDG------------------GFAEYLLVPSRRLVKLPRG  138 (340)
T ss_pred             CCCEEEEcCCCCCCCChHHhCcCcccCCCCcc---cCcc-CCC------------------cceeeEEecHHHeEECCCC
Confidence            99999999988999999999999999998775   2332 234                  9999999999999999999


Q ss_pred             CCchhhhhccccchhhhhhhhhh-CCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCChhHHHHHhhcCCC
Q 025895          167 APLDKVCLLGCGVPTGLGAVWNT-AKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~l~~~-~~~~~~~~VlI~Gag~~G~~ai~~a~~~G-~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      +++++++.+++.+.|||+++... ..+.++++|||+|+|.+|++++++|+.+| . +|+++++++++.+.++++|++
T Consensus       139 ls~~~aa~l~~~~~ta~~~l~~~~~~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~-~v~~~~~~~~~~~~~~~~g~~  214 (340)
T cd05284         139 LDPVEAAPLADAGLTAYHAVKKALPYLDPGSTVVVIGVGGLGHIAVQILRALTPA-TVIAVDRSEEALKLAERLGAD  214 (340)
T ss_pred             CCHHHhhhhcchHHHHHHHHHHhcccCCCCCEEEEEcCcHHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHhCCc
Confidence            99999999999999999987665 46888999999999889999999999999 6 899999999999999999976

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=100.00  E-value=3.5e-31  Score=235.15  Aligned_cols=229  Identities=46%  Similarity=0.812  Sum_probs=191.1

Q ss_pred             eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCCC
Q 025895           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (246)
Q Consensus        10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd   89 (246)
                      |||+++..++.+++++++|.|.+++++|+||+.++++|+.|...+.+.++ ..+|.++|+|++|+|+++|+++..+++||
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~i~~~d~~~~~g~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd   79 (363)
T cd08279           1 MRAAVLHEVGKPLEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLP-APLPAVLGHEGAGVVEEVGPGVTGVKPGD   79 (363)
T ss_pred             CeEEEEecCCCCceEEEeeCCCCCCCeEEEEEEEeecCcHHHHHhcCCCC-CCCCccccccceEEEEEeCCCccccCCCC
Confidence            79999999888899999999999999999999999999999998888665 35678999999999999999999999999


Q ss_pred             EEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCc
Q 025895           90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL  169 (246)
Q Consensus        90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~  169 (246)
                      +|+..+..+|++|.+|..+..+.|.+.... -.|.. .++...+.--|...+.....|+|++|+.++.+.++++|+++++
T Consensus        80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~  157 (363)
T cd08279          80 HVVLSWIPACGTCRYCSRGQPNLCDLGAGI-LGGQL-PDGTRRFTADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIPL  157 (363)
T ss_pred             EEEECCCCCCCCChhhcCCCcccCcccccc-ccccc-CCCcccccccCccccccccCccceeeEEeccccEEECCCCCCh
Confidence            999999999999999999999999864210 00000 0000000001111111234569999999999999999999999


Q ss_pred             hhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       170 ~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      ++++.+++.+.++|.++.....+.++++|||+|+|.+|++++++|+.+|+.+|+++++++++.+.++++|++
T Consensus       158 ~~aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g~~  229 (363)
T cd08279         158 DRAALLGCGVTTGVGAVVNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGAT  229 (363)
T ss_pred             HHeehhcchhHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhCCe
Confidence            999999999999999887888899999999998899999999999999995599999999999999888875

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=2.3e-31  Score=234.97  Aligned_cols=210  Identities=25%  Similarity=0.421  Sum_probs=183.1

Q ss_pred             eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC---------CCCCcccccceEEEEEEcCC
Q 025895           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE---------GLFPCILGHEAAGIVESVGE   80 (246)
Q Consensus        10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~---------~~~p~v~G~e~vG~V~~vG~   80 (246)
                      |||++++++++ ++++++|.|++.+++|+||+.+++||+.|+..+.+....         ..+|.++|||++|+|+++|+
T Consensus         1 mka~~~~~~~~-~~~~~~~~p~~~~~~v~V~v~a~~i~~~d~~~~~g~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~   79 (350)
T cd08256           1 MRAVVCHGPQD-YRLEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVVELGE   79 (350)
T ss_pred             CeeEEEecCCc-eEEEECCCCCCCCCeEEEEEEEEEEcccchhhhcCCCccccccccCccCCCCcccCcceeEEEEEeCC
Confidence            68999998876 999999999999999999999999999999988775311         14677899999999999999


Q ss_pred             CCC--ccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecC
Q 025895           81 GVT--EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV  158 (246)
Q Consensus        81 ~~~--~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  158 (246)
                      +++  .|++||+|+..+..+|+.|.+|..++.++|.....   .|+..                 ...|+|++|+.++.+
T Consensus        80 ~v~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~-----------------~~~g~~~~~~~~~~~  139 (350)
T cd08256          80 GAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDL---YGFQN-----------------NVNGGMAEYMRFPKE  139 (350)
T ss_pred             CcccCCCCCCCEEEECCcCCCCCChHHhCcCcccCcCccc---eeecc-----------------CCCCcceeeEEcccc
Confidence            998  89999999999999999999999999999986432   22210                 012499999999987


Q ss_pred             -ceEEcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          159 -SVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       159 -~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                       .++++|+++++++++.+ .++.++|.++ +..+++++++|+|.|+|.+|++++++|+.+|+..+++++++++|.+++.+
T Consensus       140 ~~~~~lP~~~~~~~aa~~-~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~  217 (350)
T cd08256         140 AIVHKVPDDIPPEDAILI-EPLACALHAV-DRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARK  217 (350)
T ss_pred             cceEECCCCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHH
Confidence             57899999999999888 7889999986 77889999999997789999999999999998678899999999999999


Q ss_pred             cCCCc
Q 025895          238 CVSSS  242 (246)
Q Consensus       238 lg~~~  242 (246)
                      +|++.
T Consensus       218 ~g~~~  222 (350)
T cd08256         218 FGADV  222 (350)
T ss_pred             cCCcE
Confidence            99863

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=5.3e-31  Score=231.99  Aligned_cols=209  Identities=33%  Similarity=0.567  Sum_probs=188.6

Q ss_pred             eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCCC
Q 025895           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (246)
Q Consensus        10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd   89 (246)
                      |||+++.+++.++++++.|.|.+.+++|+||+.++++|+.|+..+.+..+...+|.++|+|++|+|+++|+++..+++||
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~~G~~~~~~~~Gd   80 (345)
T cd08260           1 MRAAVYEEFGEPLEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPDVTLPHVPGHEFAGVVVEVGEDVSRWRVGD   80 (345)
T ss_pred             CeeEEEecCCCCcEEEEccCCCCCCCeEEEEEEEeeccHHHHHHhcCCCCCCCCCeeeccceeEEEEEECCCCccCCCCC
Confidence            79999999888899999999999999999999999999999999888766556688999999999999999999999999


Q ss_pred             EEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecC--ceEEcCCCC
Q 025895           90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQA  167 (246)
Q Consensus        90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~ip~~~  167 (246)
                      +|+..+...|++|.+|..|..+.|.++..   .|+. .+|                  +|++|+.++..  .++++|+++
T Consensus        81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~g------------------~~~~~~~v~~~~~~~~~iP~~~  138 (345)
T cd08260          81 RVTVPFVLGCGTCPYCRAGDSNVCEHQVQ---PGFT-HPG------------------SFAEYVAVPRADVNLVRLPDDV  138 (345)
T ss_pred             EEEECCCCCCCCCccccCcCcccCCCCcc---cccC-CCC------------------cceeEEEcccccCceEECCCCC
Confidence            99887778899999999999999998642   2222 233                  89999999974  899999999


Q ss_pred             CchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      ++++++.+.+...+||+++....++.++++|+|+|+|.+|++++++|+.+|+ +|+++++++++.+.++++|++
T Consensus       139 ~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~g~~  211 (345)
T cd08260         139 DFVTAAGLGCRFATAFRALVHQARVKPGEWVAVHGCGGVGLSAVMIASALGA-RVIAVDIDDDKLELARELGAV  211 (345)
T ss_pred             CHHHhhhhccchHHHHHHHHHccCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHhCCC
Confidence            9999999999999999987777889999999999999999999999999999 899999999999999999986

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=100.00  E-value=2.5e-31  Score=238.43  Aligned_cols=214  Identities=21%  Similarity=0.205  Sum_probs=183.3

Q ss_pred             cccceeeeEeec--CCC---CeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC----------CCCCcccccc
Q 025895            6 QVITCKAAVAWE--PNK---PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE----------GLFPCILGHE   70 (246)
Q Consensus         6 ~~~~~ka~~~~~--~~~---~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~----------~~~p~v~G~e   70 (246)
                      .+.+|||+++..  ++.   .++++++|.|.++++||+||+.+++||++|++.+.+....          ...+.++|||
T Consensus         9 ~~~~~~a~~~~~~~~g~~~~~~~~~~~~~p~l~~~evlI~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~G~e   88 (393)
T cd08246           9 VPEKMYAFAIRPERYGDPAQAIQLEDVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYHIGGSD   88 (393)
T ss_pred             CchhhhheeeecccCCCcccceEEeecCCCCCCCCEEEEEEEEEeeccchhhhhcCCCccccccccccCCCCCccccccc
Confidence            357899998863  232   3789999999999999999999999999999887664210          1123589999


Q ss_pred             eEEEEEEcCCCCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCccee
Q 025895           71 AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFS  150 (246)
Q Consensus        71 ~vG~V~~vG~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~  150 (246)
                      ++|+|+++|++++.+++||+|+..+...|+.|..|..+..++|.....   .|+...+                  |+|+
T Consensus        89 ~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~---~g~~~~~------------------g~~a  147 (393)
T cd08246          89 ASGIVWAVGEGVKNWKVGDEVVVHCSVWDGNDPERAGGDPMFDPSQRI---WGYETNY------------------GSFA  147 (393)
T ss_pred             eEEEEEEeCCCCCcCCCCCEEEEeccccccCccccccccccccccccc---ccccCCC------------------Ccce
Confidence            999999999999999999999999999999999999999999986543   2322123                  4999


Q ss_pred             eeEEeecCceEEcCCCCCchhhhhccccchhhhhhhhhh--CCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcC
Q 025895          151 QYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT--AKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI  227 (246)
Q Consensus       151 ~~~~~~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~--~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~  227 (246)
                      +|+.++...++++|+++++++++.+.+++.|||+++...  .+++++++|+|+|+ |.+|++++++|+.+|+ +++++++
T Consensus       148 ~y~~v~~~~l~~iP~~l~~~~aa~l~~~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~-~vv~~~~  226 (393)
T cd08246         148 QFALVQATQLMPKPKHLSWEEAAAYMLVGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGA-NPVAVVS  226 (393)
T ss_pred             eEEEechHHeEECCCCCCHHHHhhhcccHHHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHcCC-eEEEEeC
Confidence            999999999999999999999999999999999987554  67899999999997 9999999999999999 7888899


Q ss_pred             ChhHHHHHhhcCCC
Q 025895          228 DPKKFDRGMSCVSS  241 (246)
Q Consensus       228 ~~~~~~~~~~lg~~  241 (246)
                      +++|++.++++|++
T Consensus       227 s~~~~~~~~~~G~~  240 (393)
T cd08246         227 SEEKAEYCRALGAE  240 (393)
T ss_pred             CHHHHHHHHHcCCC
Confidence            99999999999976

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=99.98  E-value=8.2e-31  Score=230.78  Aligned_cols=210  Identities=30%  Similarity=0.440  Sum_probs=186.8

Q ss_pred             eeeeEeecCCCCeEEEEeecCCC-CCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCC
Q 025895           10 CKAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (246)
Q Consensus        10 ~ka~~~~~~~~~~~~~e~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~G   88 (246)
                      |||+++.++++ ++++++|.|+| .++||+||+.++++|+.|+..+.+.+....+|.++|||++|+|+++|+++..+++|
T Consensus         1 m~a~~~~~~~~-~~~~~~~~p~~~~~~ev~v~v~a~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~G   79 (345)
T cd08286           1 MKALVYHGPGK-ISWEDRPKPTIQEPTDAIVKMLKTTICGTDLHILKGDVPTVTPGRILGHEGVGVVEEVGSAVTNFKVG   79 (345)
T ss_pred             CceEEEecCCc-eeEEecCCCCCCCCCeEEEEEEEeeecchhhHHHcCCCCCCCCCceecccceEEEEEeccCccccCCC
Confidence            68999998887 99999999996 89999999999999999999998876554568899999999999999999999999


Q ss_pred             CEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecC--ceEEcCCC
Q 025895           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQ  166 (246)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~ip~~  166 (246)
                      |+|+..+...|+.|.+|..+..+.|....+.  .|.. .+|                  +|++|+.++..  .++++|++
T Consensus        80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~g------------------~~~~~~~v~~~~~~~~~lp~~  138 (345)
T cd08286          80 DRVLISCISSCGTCGYCRKGLYSHCESGGWI--LGNL-IDG------------------TQAEYVRIPHADNSLYKLPEG  138 (345)
T ss_pred             CEEEECCcCCCCCChHHHCcCcccCCCcccc--cccc-cCC------------------eeeeEEEcccccCceEECCCC
Confidence            9999998889999999999999999876442  1211 233                  89999999987  89999999


Q ss_pred             CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      ++..+++.+.+.+.+||.++....++.++++|||.|+|.+|++++|+|+.+|+.++++++++++|.+.++++|++
T Consensus       139 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~  213 (345)
T cd08286         139 VDEEAAVMLSDILPTGYECGVLNGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGAT  213 (345)
T ss_pred             CCHHHhhhccchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCC
Confidence            999999999999999998766778899999999998899999999999999944899999999999999999986

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=99.98  E-value=5.2e-31  Score=230.81  Aligned_cols=207  Identities=31%  Similarity=0.464  Sum_probs=185.6

Q ss_pred             eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCCC
Q 025895           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (246)
Q Consensus        10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd   89 (246)
                      |||+++.+++++++++++|.|.+++++++||+.++++|+.|+..+.+..+..++|.++|||++|+|+++|+++..+++||
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~G~   80 (334)
T PRK13771          1 MKAVILPGFKQGYRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPRMKYPVILGHEVVGTVEEVGENVKGFKPGD   80 (334)
T ss_pred             CeeEEEcCCCCCcEEEeCCCCCCCCCeEEEEEEEEeechhhHHHhcCCCCCCCCCeeccccceEEEEEeCCCCccCCCCC
Confidence            78999999998899999999999999999999999999999998888765556688999999999999999998899999


Q ss_pred             EEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCc
Q 025895           90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL  169 (246)
Q Consensus        90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~  169 (246)
                      +|+..+..+|+.|.+|..+..+.|.....   .|.. .+                  |+|++|+.++.+.++++|+++++
T Consensus        81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~------------------g~~~~~~~~~~~~~~~lp~~~~~  138 (334)
T PRK13771         81 RVASLLYAPDGTCEYCRSGEEAYCKNRLG---YGEE-LD------------------GFFAEYAKVKVTSLVKVPPNVSD  138 (334)
T ss_pred             EEEECCCCCCcCChhhcCCCcccCccccc---cccc-cC------------------ceeeeeeecchhceEECCCCCCH
Confidence            99999888999999999999999987643   2211 23                  38999999999999999999999


Q ss_pred             hhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       170 ~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      .+++.+.+.+.++|+++... .+.++++|+|+|+ |.+|++++++++.+|+ +++++++++++++.++++ ++
T Consensus       139 ~~~a~l~~~~~~a~~~~~~~-~~~~~~~vlI~g~~g~~g~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~-~~  208 (334)
T PRK13771        139 EGAVIVPCVTGMVYRGLRRA-GVKKGETVLVTGAGGGVGIHAIQVAKALGA-KVIAVTSSESKAKIVSKY-AD  208 (334)
T ss_pred             HHhhcccchHHHHHHHHHhc-CCCCCCEEEEECCCccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHH-HH
Confidence            99999999999999987555 8899999999998 9999999999999999 899999999999888777 44

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=99.98  E-value=8.1e-31  Score=231.36  Aligned_cols=210  Identities=29%  Similarity=0.471  Sum_probs=186.9

Q ss_pred             eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCC------------CCCCCcccccceEEEEEE
Q 025895           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP------------EGLFPCILGHEAAGIVES   77 (246)
Q Consensus        10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~------------~~~~p~v~G~e~vG~V~~   77 (246)
                      |||+++..++.++++++.|.|+++++||+||+.++++|+.|+..+.+.++            ..++|.++|||++|+|++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~p~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~   80 (350)
T cd08240           1 MKAAAVVEPGKPLEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIVGEVVA   80 (350)
T ss_pred             CeeEEeccCCCCceEEecCCCCCCCCeEEEEEEEEecCchhHHHHcCCCCccccccccccccCCCCCcccccceeEEEEe
Confidence            79999999888899999999999999999999999999999998877543            124567899999999999


Q ss_pred             cCCCCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeec
Q 025895           78 VGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD  157 (246)
Q Consensus        78 vG~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~  157 (246)
                      +|++++++++||+|+..+...|++|.+|..+.++.|.+...   .|.. .                  .|+|++|+.++.
T Consensus        81 vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~------------------~g~~~~~~~~~~  138 (350)
T cd08240          81 VGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGRA---LGIF-Q------------------DGGYAEYVIVPH  138 (350)
T ss_pred             eCCCCCCCCCCCEEEECCcCCCCCChHHHCcCcccCCCCCc---eeee-c------------------cCcceeeEEecH
Confidence            99999999999999999999999999999999999987532   1211 2                  248999999999


Q ss_pred             CceEEcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          158 VSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       158 ~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      +.++++|+++++.+++.+.+.+.+||+++......+++++|+|+|+|.+|++++|+|+.+|++.|++++++++|.+.+++
T Consensus       139 ~~~~~~p~~~s~~~aa~l~~~~~tA~~~~~~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~  218 (350)
T cd08240         139 SRYLVDPGGLDPALAATLACSGLTAYSAVKKLMPLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA  218 (350)
T ss_pred             HHeeeCCCCCCHHHeehhhchhhhHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence            99999999999999999999999999988776667789999999889999999999999999778999999999999999


Q ss_pred             cCCC
Q 025895          238 CVSS  241 (246)
Q Consensus       238 lg~~  241 (246)
                      +|++
T Consensus       219 ~g~~  222 (350)
T cd08240         219 AGAD  222 (350)
T ss_pred             hCCc
Confidence            9976

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=99.98  E-value=1.1e-30  Score=229.55  Aligned_cols=211  Identities=30%  Similarity=0.455  Sum_probs=182.6

Q ss_pred             eeeeEeecCCCCeEEEEeecCCCC-CCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCC
Q 025895           10 CKAAVAWEPNKPLVIEDVQVAPPQ-AGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (246)
Q Consensus        10 ~ka~~~~~~~~~~~~~e~~~p~~~-~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~G   88 (246)
                      |||+++.+++. ++++++|.|.|. +++|+||+.++++|+.|.....+.++ ..+|.++|+|++|+|+++|++++++++|
T Consensus         1 ~~a~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~~G   78 (344)
T cd08284           1 MKAVVFKGPGD-VRVEEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIP-STPGFVLGHEFVGEVVEVGPEVRTLKVG   78 (344)
T ss_pred             CeeEEEecCCC-ceEEeccCCCCCCCCeEEEEEEEeeccccchhhhcCCCC-CCCCcccccceEEEEEeeCCCccccCCC
Confidence            68999988765 999999999985 99999999999999999988877654 2457889999999999999999999999


Q ss_pred             CEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecC--ceEEcCCC
Q 025895           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQ  166 (246)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~ip~~  166 (246)
                      |+|+..+...|+.|.+|..+..++|.+....+..+..                  ...|+|++|+.++.+  .++++|++
T Consensus        79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~g~~~~~~~v~~~~~~~~~~p~~  140 (344)
T cd08284          79 DRVVSPFTIACGECFYCRRGQSGRCAKGGLFGYAGSP------------------NLDGAQAEYVRVPFADGTLLKLPDG  140 (344)
T ss_pred             CEEEEcccCCCCCChHHhCcCcccCCCCccccccccC------------------CCCCceeEEEEcccccCceEECCCC
Confidence            9999998899999999999999999875431110111                  113489999999864  99999999


Q ss_pred             CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      +++++++.+++.+.|||+++. ...+.++++|+|+|+|.+|++++++|+.+|+.++++++++++|.+.++++|++
T Consensus       141 l~~~~a~~l~~~~~ta~~~~~-~~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~  214 (344)
T cd08284         141 LSDEAALLLGDILPTGYFGAK-RAQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGAE  214 (344)
T ss_pred             CCHHHhhhhcCchHHHHhhhH-hcCCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhCCe
Confidence            999999999999999999874 47888999999998899999999999999975799998999999999999864

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=99.98  E-value=1.4e-30  Score=232.24  Aligned_cols=217  Identities=30%  Similarity=0.426  Sum_probs=182.8

Q ss_pred             eeeeEeecCCCCeEEEEeecCCC-CCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCC
Q 025895           10 CKAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (246)
Q Consensus        10 ~ka~~~~~~~~~~~~~e~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~G   88 (246)
                      ||++++.+++. ++++++|.|.+ +++||+||+++++||+.|+..+.+..+ ..+|.++|||++|+|+++|+++..+++|
T Consensus         1 m~~~~~~~~~~-~~~~~~~~p~~~~~~evlv~v~a~~i~~~D~~~~~g~~~-~~~p~~~g~e~~G~V~~vG~~v~~~~~G   78 (375)
T cd08282           1 MKAVVYGGPGN-VAVEDVPDPKIEHPTDAIVRITTTAICGSDLHMYRGRTG-AEPGLVLGHEAMGEVEEVGSAVESLKVG   78 (375)
T ss_pred             CceEEEecCCc-eeEEeCCCCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCC-CCCCceeccccEEEEEEeCCCCCcCCCC
Confidence            68999988875 99999999996 899999999999999999999888765 3468899999999999999999999999


Q ss_pred             CEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecC--ceEEcCCC
Q 025895           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQ  166 (246)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~ip~~  166 (246)
                      |+|+..+..+|+.|..|..+..+.|.+..+..       ++ .+++..+    .....|+|++|+.+|..  .++++|++
T Consensus        79 d~V~~~~~~~~g~~~~c~~~~~~~~~~~~~~~-------~~-~~~~~~~----~~~~~g~~a~y~~v~~~~~~~~~lP~~  146 (375)
T cd08282          79 DRVVVPFNVACGRCRNCKRGLTGVCLTVNPGR-------AG-GAYGYVD----MGPYGGGQAEYLRVPYADFNLLKLPDR  146 (375)
T ss_pred             CEEEEeCCCCCCCCHHHHCcCcccCCCCCccc-------cc-ccccccc----cCCCCCeeeeEEEeecccCcEEECCCC
Confidence            99999999999999999999999998643210       00 0000000    00113589999999976  89999999


Q ss_pred             CCch---hhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          167 APLD---KVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       167 ~~~~---~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      ++++   +++.+...+.++|+++ ...++.++++|+|.|+|.+|++++|+|+++|+..|++++++++|++.++++|+.
T Consensus       147 ~~~~~~~~~a~~~~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g~~  223 (375)
T cd08282         147 DGAKEKDDYLMLSDIFPTGWHGL-ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGAI  223 (375)
T ss_pred             CChhhhhheeeecchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCe
Confidence            9998   5677778889999987 778899999999998899999999999999986788899999999999999974

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=99.98  E-value=2.3e-31  Score=217.36  Aligned_cols=191  Identities=29%  Similarity=0.328  Sum_probs=176.3

Q ss_pred             CcccceeeeEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCC
Q 025895            5 GQVITCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGV   82 (246)
Q Consensus         5 ~~~~~~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~   82 (246)
                      .+++..|-+++++.|.+  +++++.|.|+|.++|++||-.|+|+|..|..+..|.+...+.|+++|-|++|+|+++|+++
T Consensus         4 ~~p~~~k~i~v~e~Ggydvlk~ed~pv~~papgel~iknka~GlNfid~y~RkGlY~~~plPytpGmEaaGvVvAvG~gv   83 (336)
T KOG1197|consen    4 ASPPLLKCIVVTEFGGYDVLKLEDRPVPPPAPGELTIKNKACGLNFIDLYFRKGLYDPAPLPYTPGMEAAGVVVAVGEGV   83 (336)
T ss_pred             CCCchheEEEEeccCCcceEEEeeecCCCCCCCceEEeehhcCccHHHHHHhccccCCCCCCcCCCcccceEEEEecCCc
Confidence            45677888899888777  8899999999999999999999999999999999999877899999999999999999999


Q ss_pred             CccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEE
Q 025895           83 TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAK  162 (246)
Q Consensus        83 ~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  162 (246)
                      +++++||||....                               +                  .|.|+|+..+|...+++
T Consensus        84 tdrkvGDrVayl~-------------------------------~------------------~g~yaee~~vP~~kv~~  114 (336)
T KOG1197|consen   84 TDRKVGDRVAYLN-------------------------------P------------------FGAYAEEVTVPSVKVFK  114 (336)
T ss_pred             cccccccEEEEec-------------------------------c------------------chhhheeccccceeecc
Confidence            9999999997432                               1                  34899999999999999


Q ss_pred             cCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          163 IDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       163 ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      +|+.+++..|+++.+...|||.-+++..++++|++||++.+ |++|+++.|+++..|+ .+|++.++.+|.+.+++-|+.
T Consensus       115 vpe~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a-~tI~~asTaeK~~~akenG~~  193 (336)
T KOG1197|consen  115 VPEAITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGA-HTIATASTAEKHEIAKENGAE  193 (336)
T ss_pred             CCcccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCc-EEEEEeccHHHHHHHHhcCCc
Confidence            99999999999999999999998999999999999999966 9999999999999999 999999999999999999999


Q ss_pred             --cccc
Q 025895          242 --SKYH  245 (246)
Q Consensus       242 --~~~~  245 (246)
                        ++|+
T Consensus       194 h~I~y~  199 (336)
T KOG1197|consen  194 HPIDYS  199 (336)
T ss_pred             ceeecc
Confidence              6554

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=99.98  E-value=1.7e-30  Score=226.56  Aligned_cols=208  Identities=39%  Similarity=0.626  Sum_probs=186.2

Q ss_pred             eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCCC
Q 025895           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (246)
Q Consensus        10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd   89 (246)
                      |||+++..+++++.++++|.|.+.+++|+||++++++|+.|+..+.+..+....|.++|||++|+|+++|++++.+++||
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd   80 (332)
T cd08259           1 MKAAILHKPNKPLQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFPRGKYPLILGHEIVGTVEEVGEGVERFKPGD   80 (332)
T ss_pred             CeEEEEecCCCceEEEEccCCCCCCCeEEEEEEEEecchhhhHHhcCCCCCCCCCeeccccceEEEEEECCCCccCCCCC
Confidence            68999988666699999999999999999999999999999999888766556688999999999999999999999999


Q ss_pred             EEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCc
Q 025895           90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL  169 (246)
Q Consensus        90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~  169 (246)
                      +|+..+...|++|.+|..+..+.|.+...   .|.. ..                  |+|++|+.++...++++|+++++
T Consensus        81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~------------------g~~~~~~~v~~~~~~~ip~~~~~  138 (332)
T cd08259          81 RVILYYYIPCGKCEYCLSGEENLCRNRAE---YGEE-VD------------------GGFAEYVKVPERSLVKLPDNVSD  138 (332)
T ss_pred             EEEECCCCCCcCChhhhCCCcccCCCccc---cccc-cC------------------CeeeeEEEechhheEECCCCCCH
Confidence            99999988999999999999999987522   3322 23                  38999999999999999999999


Q ss_pred             hhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       170 ~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      ++++.+++++.++|+++.. ..+.++++++|+|+ |.+|++++++++..|+ +++++.+++++.+.++++|.+
T Consensus       139 ~~~~~~~~~~~ta~~~l~~-~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~~~  209 (332)
T cd08259         139 ESAALAACVVGTAVHALKR-AGVKKGDTVLVTGAGGGVGIHAIQLAKALGA-RVIAVTRSPEKLKILKELGAD  209 (332)
T ss_pred             HHHhhhccHHHHHHHHHHH-hCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHcCCc
Confidence            9999999999999998766 88899999999998 9999999999999999 899998999998888888765

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=99.97  E-value=1.8e-30  Score=227.83  Aligned_cols=207  Identities=29%  Similarity=0.480  Sum_probs=183.4

Q ss_pred             eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCCC
Q 025895           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (246)
Q Consensus        10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd   89 (246)
                      ||++++.++++...+++.|.|.++++||+||++++++|++|...+.+..+. ..|.++|||++|+|+++|+++..|++||
T Consensus         1 mka~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~d~~~~~g~~~~-~~~~~~g~e~~G~V~~~G~~v~~~~~Gd   79 (338)
T PRK09422          1 MKAAVVNKDHTGDVVVEKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFGD-KTGRILGHEGIGIVKEVGPGVTSLKVGD   79 (338)
T ss_pred             CeEEEecCCCCCceEEEecCCCCCCCeEEEEEEEEeechhHHHHHcCCCCC-CCCccCCcccceEEEEECCCCccCCCCC
Confidence            799999998875449999999999999999999999999999988776543 3467899999999999999999999999


Q ss_pred             EEEeeC-CCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCC
Q 025895           90 HVIPCY-QAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP  168 (246)
Q Consensus        90 ~V~~~~-~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~  168 (246)
                      +|++.+ ..+|+.|.+|..+..+.|.+...   .|.. .+|                  +|++|+.++.+.++++|++++
T Consensus        80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~g------------------~~~~~~~v~~~~~~~~p~~~~  137 (338)
T PRK09422         80 RVSIAWFFEGCGHCEYCTTGRETLCRSVKN---AGYT-VDG------------------GMAEQCIVTADYAVKVPEGLD  137 (338)
T ss_pred             EEEEccCCCCCCCChhhcCCCcccCCCccc---cCcc-ccC------------------cceeEEEEchHHeEeCCCCCC
Confidence            998765 46899999999999999987542   2322 234                  999999999999999999999


Q ss_pred             chhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHH-cCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKA-AGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       169 ~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~-~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      +.+++.+++...|+|+++ ....++++++|||+|+|++|++++++|+. +|+ +|+++++++++++.++++|++
T Consensus       138 ~~~aa~l~~~~~ta~~~~-~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~-~v~~~~~~~~~~~~~~~~g~~  209 (338)
T PRK09422        138 PAQASSITCAGVTTYKAI-KVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNA-KVIAVDINDDKLALAKEVGAD  209 (338)
T ss_pred             HHHeehhhcchhHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHcCCc
Confidence            999999999999999986 77889999999999999999999999998 599 899999999999999999986

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=99.97  E-value=2.6e-30  Score=232.31  Aligned_cols=214  Identities=22%  Similarity=0.292  Sum_probs=182.3

Q ss_pred             cccceeeeEeec--CCCC---eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCC----------CCCCC-ccccc
Q 025895            6 QVITCKAAVAWE--PNKP---LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP----------EGLFP-CILGH   69 (246)
Q Consensus         6 ~~~~~ka~~~~~--~~~~---~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~----------~~~~p-~v~G~   69 (246)
                      .+.+|||+++..  +++|   ++++++|.|.+++++|+||+.++++|++|.+...+...          ....| .++||
T Consensus         4 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~p~l~~~evlV~v~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~   83 (398)
T TIGR01751         4 VPETMYAFAIREERDGDPRQAIQLEVVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGRDDLPFHIIGS   83 (398)
T ss_pred             cchhhhheEEecccCCCcccceEEeecCCCCCCCCeEEEEEEEEecCchhhhhhcCCccchhhhhcccCCCCCCceeccc
Confidence            457799999965  4543   99999999999999999999999999999876655321          00223 37999


Q ss_pred             ceEEEEEEcCCCCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcce
Q 025895           70 EAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTF  149 (246)
Q Consensus        70 e~vG~V~~vG~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~  149 (246)
                      |++|+|+++|+++..+++||+|+..+...|++|.+|..+....|...+.   .|....+                  |+|
T Consensus        84 e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~------------------g~~  142 (398)
T TIGR01751        84 DASGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRVGDPMLSSEQRI---WGYETNF------------------GSF  142 (398)
T ss_pred             ceEEEEEEeCCCCCCCCCCCEEEEccccccCCchhhccCcccccccccc---ccccCCC------------------ccc
Confidence            9999999999999999999999999999999999999999999976442   2221123                  499


Q ss_pred             eeeEEeecCceEEcCCCCCchhhhhccccchhhhhhhhh--hCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEc
Q 025895          150 SQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN--TAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID  226 (246)
Q Consensus       150 ~~~~~~~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~--~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~  226 (246)
                      ++|+.++...++++|+++++++++.+.+...++|+++..  ..++.++++|+|+|+ |.+|++++++|+++|+ ++++++
T Consensus       143 ae~~~v~~~~~~~vP~~l~~~~aa~~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~-~vi~~~  221 (398)
T TIGR01751       143 AEFALVKDYQLMPKPKHLTWEEAACPGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAGGG-NPVAVV  221 (398)
T ss_pred             eEEEEechHHeEECCCCCCHHHHhhccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-eEEEEc
Confidence            999999999999999999999999999999999998754  467889999999998 9999999999999999 788888


Q ss_pred             CChhHHHHHhhcCCC
Q 025895          227 IDPKKFDRGMSCVSS  241 (246)
Q Consensus       227 ~~~~~~~~~~~lg~~  241 (246)
                      +++++.+.++++|++
T Consensus       222 ~~~~~~~~~~~~g~~  236 (398)
T TIGR01751       222 SSPEKAEYCRELGAE  236 (398)
T ss_pred             CCHHHHHHHHHcCCC
Confidence            999999999999986

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>PLN02702 L-idonate 5-dehydrogenase

Probab=99.97  E-value=4.8e-30  Score=227.86  Aligned_cols=210  Identities=25%  Similarity=0.381  Sum_probs=174.5

Q ss_pred             ceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCC---CCCCCcccccceEEEEEEcCCCCCcc
Q 025895            9 TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGEGVTEV   85 (246)
Q Consensus         9 ~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~---~~~~p~v~G~e~vG~V~~vG~~~~~~   85 (246)
                      +++++++..+.. +++++.|.|.++++||+||++++++|++|...+.+...   ...+|.++|||++|+|+++|+++.+|
T Consensus        17 ~~~~~~~~~~~~-l~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   95 (364)
T PLN02702         17 ENMAAWLVGVNT-LKIQPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGSEVKHL   95 (364)
T ss_pred             ccceEEEecCCc-eEEEeccCCCCCCCeEEEEEEEEEEchhhhHHHcCCCCccccCCCCcccccceeEEEEEECCCCCCC
Confidence            344444445544 99999999999999999999999999999998876321   11357789999999999999999999


Q ss_pred             CCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCC
Q 025895           86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP  165 (246)
Q Consensus        86 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~  165 (246)
                      ++||+|+..+..+|++|.+|..|..+.|.+...   .+....+                  |+|++|+.++...++++|+
T Consensus        96 ~~Gd~V~~~~~~~~~~c~~c~~g~~~~c~~~~~---~~~~~~~------------------g~~~~y~~v~~~~~~~~P~  154 (364)
T PLN02702         96 VVGDRVALEPGISCWRCNLCKEGRYNLCPEMKF---FATPPVH------------------GSLANQVVHPADLCFKLPE  154 (364)
T ss_pred             CCCCEEEEcCCCCCCCCcchhCcCcccCCCccc---cCCCCCC------------------CcccceEEcchHHeEECCC
Confidence            999999999999999999999999999986432   1111112                  4999999999999999999


Q ss_pred             CCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       166 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      ++++++++.. ..+.++|+++ ...++.++++|+|+|+|.+|++++++|+.+|+..+++++++++|.++++++|++.
T Consensus       155 ~l~~~~aa~~-~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~  229 (364)
T PLN02702        155 NVSLEEGAMC-EPLSVGVHAC-RRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADE  229 (364)
T ss_pred             CCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCE
Confidence            9999888752 2344577765 6788899999999998999999999999999967899999999999999999874

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=4.4e-30  Score=228.31  Aligned_cols=230  Identities=33%  Similarity=0.571  Sum_probs=190.0

Q ss_pred             eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCc---cC
Q 025895           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTE---VQ   86 (246)
Q Consensus        10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~---~~   86 (246)
                      |||+++++++.++++++.|.|.++++||+||+.++++|+.|+..+.+.++. .+|.++|||++|+|+.+|+++.+   ++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~-~~p~~~g~e~~G~v~~vG~~~~~~~~~~   79 (367)
T cd08263           1 MKAAVLKGPNPPLTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLKGELPF-PPPFVLGHEISGEVVEVGPNVENPYGLS   79 (367)
T ss_pred             CeeEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEeeeCcchHHHhcCCCCC-CCCcccccccceEEEEeCCCCCCCCcCC
Confidence            689999998777999999999999999999999999999999988876644 56789999999999999999988   99


Q ss_pred             CCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccC-CcceeeccCCcceeeeEEeecCceEEcCC
Q 025895           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSIN-GKPIYHFMGTSTFSQYTVVHDVSVAKIDP  165 (246)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~ip~  165 (246)
                      +||+|+..+..+|++|.+|..+.+++|.++..+...+..-.+|++.+... +.+++ ....|+|++|+.++.+.++++|+
T Consensus        80 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~P~  158 (367)
T cd08263          80 VGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLYDGTTRLFRLDGGPVY-MYSMGGLAEYAVVPATALAPLPE  158 (367)
T ss_pred             CCCEEEEcCCCCCCCChHHhCcCcccCcCccccccccccccCCcccccccCCCccc-cccCCcceeEEEechhhEEECCC
Confidence            99999998888999999999999999998652111110000110000000 00000 02346999999999999999999


Q ss_pred             CCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       166 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      ++++.+++.+++.+.|||.++.....+.++++|||+|+|.+|++++++|+.+|+..+++++.++++.+.++++|++
T Consensus       159 ~is~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g~~  234 (367)
T cd08263         159 SLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGAT  234 (367)
T ss_pred             CCCHHHHhHhcchHHHHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCc
Confidence            9999999999999999999887777889999999998899999999999999995599999999999999888876

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=99.97  E-value=1.7e-30  Score=234.44  Aligned_cols=197  Identities=19%  Similarity=0.286  Sum_probs=160.5

Q ss_pred             cceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhh-cCCCCC------CCCCcccccceEEEEEEcCC
Q 025895            8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTW-SGKDPE------GLFPCILGHEAAGIVESVGE   80 (246)
Q Consensus         8 ~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~-~~~~~~------~~~p~v~G~e~vG~V~~vG~   80 (246)
                      |+||+++++++++ ++++|+|.|.|+++||+|||.++|||++|++.+ .+....      ..+|.++|||++|+|+++|+
T Consensus         1 m~~~a~~~~~~~~-l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~g~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~   79 (410)
T cd08238           1 MKTKAWRMYGKGD-LRLEKFELPEIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKVGK   79 (410)
T ss_pred             CCcEEEEEEcCCc-eEEEecCCCCCCCCeEEEEEEEeccCCCCHHHHhcCCccccCcccccCCCceeccccEEEEEEeCC
Confidence            5689999999987 999999999999999999999999999999976 443211      14688999999999999999


Q ss_pred             CCC-ccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecC-
Q 025895           81 GVT-EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV-  158 (246)
Q Consensus        81 ~~~-~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-  158 (246)
                      +++ .|++||||++.+...|+.|..|. +             .|.. .+|                  +|+||+.+|.+ 
T Consensus        80 ~v~~~~~vGdrV~~~~~~~c~~~~~c~-~-------------~g~~-~~G------------------~~aey~~v~~~~  126 (410)
T cd08238          80 KWQGKYKPGQRFVIQPALILPDGPSCP-G-------------YSYT-YPG------------------GLATYHIIPNEV  126 (410)
T ss_pred             CccCCCCCCCEEEEcCCcCCCCCCCCC-C-------------cccc-CCC------------------cceEEEEecHHh
Confidence            998 59999999999888898887772 1             1111 234                  99999999986 


Q ss_pred             ---ceEEcCCCCCchhhhhc-cccc-hhhhhhh--------hhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcC--CCeE
Q 025895          159 ---SVAKIDPQAPLDKVCLL-GCGV-PTGLGAV--------WNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAG--ASRV  222 (246)
Q Consensus       159 ---~~~~ip~~~~~~~aa~l-~~~~-~ta~~~l--------~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G--~~~v  222 (246)
                         .++++|+++++++++.+ +... .+++.++        .+..+++++++|+|+|+ |++|++++|+|+.+|  +.+|
T Consensus       127 ~~~~~~~lP~~l~~~~aal~epl~~~~~~~~a~~~~~~~~~~~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~V  206 (410)
T cd08238         127 MEQDCLLIYEGDGYAEASLVEPLSCVIGAYTANYHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLL  206 (410)
T ss_pred             ccCCeEECCCCCCHHHHhhcchHHHHHHHhhhcccccccchhhhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceE
Confidence               68999999999988754 2111 1233322        24567899999999985 999999999999975  4579


Q ss_pred             EEEcCChhHHHHHhhc
Q 025895          223 IGIDIDPKKFDRGMSC  238 (246)
Q Consensus       223 i~~~~~~~~~~~~~~l  238 (246)
                      ++++.+++|++.++++
T Consensus       207 i~~~~~~~r~~~a~~~  222 (410)
T cd08238         207 VVTDVNDERLARAQRL  222 (410)
T ss_pred             EEEcCCHHHHHHHHHh
Confidence            9999999999999997

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.97  E-value=7.6e-30  Score=223.01  Aligned_cols=209  Identities=30%  Similarity=0.476  Sum_probs=186.5

Q ss_pred             eeeeEeecCCC----CeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCcc
Q 025895           10 CKAAVAWEPNK----PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEV   85 (246)
Q Consensus        10 ~ka~~~~~~~~----~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~   85 (246)
                      ||++++.++++    ++++++.+.|.++++||+||+.++++|++|...+.+..+....|.++|||++|+|+++|+++.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~irv~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~   80 (329)
T cd08298           1 MKAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPPPKLPLIPGHEIVGRVEAVGPGVTRF   80 (329)
T ss_pred             CeEEEEecCCCCCCCCceEEeccCCCCCCCEEEEEEEEEeccHHHHHHHhCCCCCCCCCccccccccEEEEEECCCCCCC
Confidence            68999998884    58899999888999999999999999999999988876555668899999999999999999999


Q ss_pred             CCCCEEEeeC-CCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcC
Q 025895           86 QPGDHVIPCY-QAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (246)
Q Consensus        86 ~~Gd~V~~~~-~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip  164 (246)
                      ++||+|++.+ ...|+.|.+|..+..+.|.....   .|.. .+|                  +|++|+.++.+.++++|
T Consensus        81 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~g------------------~~~~~~~~~~~~~~~lp  138 (329)
T cd08298          81 SVGDRVGVPWLGSTCGECRYCRSGRENLCDNARF---TGYT-VDG------------------GYAEYMVADERFAYPIP  138 (329)
T ss_pred             cCCCEEEEeccCCCCCCChhHhCcChhhCCCccc---cccc-cCC------------------ceEEEEEecchhEEECC
Confidence            9999998765 36889999999999999987653   2322 233                  89999999999999999


Q ss_pred             CCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      +++++.+++.+.+++.+||+++ ...+++++++|+|+|+|.+|++++++++..|+ +|+++++++++++.++++|++.
T Consensus       139 ~~~~~~~~~~~~~~~~ta~~~~-~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~-~v~~~~~~~~~~~~~~~~g~~~  214 (329)
T cd08298         139 EDYDDEEAAPLLCAGIIGYRAL-KLAGLKPGQRLGLYGFGASAHLALQIARYQGA-EVFAFTRSGEHQELARELGADW  214 (329)
T ss_pred             CCCCHHHhhHhhhhhHHHHHHH-HhhCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEcCChHHHHHHHHhCCcE
Confidence            9999999999999999999987 88899999999999999999999999999999 8999999999999999999863

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]

Probab=99.97  E-value=2.3e-30  Score=214.77  Aligned_cols=192  Identities=26%  Similarity=0.330  Sum_probs=169.9

Q ss_pred             CcccceeeeEeecCCCC---eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCC
Q 025895            5 GQVITCKAAVAWEPNKP---LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGE   80 (246)
Q Consensus         5 ~~~~~~ka~~~~~~~~~---~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~   80 (246)
                      +++...|++++.+.|+|   +++++++.|+...++|+||.+|+.||++|+..+.|.|+. +++|.+=|+|++|+|+.+|+
T Consensus        15 q~~~~~kalvY~~hgdP~kVlql~~~~~p~~~~s~v~Vk~LAaPINPsDIN~IQGvYpvrP~~PAVgGnEGv~eVv~vGs   94 (354)
T KOG0025|consen   15 QMPARSKALVYSEHGDPAKVLQLKNLELPAVPGSDVLVKMLAAPINPSDINQIQGVYPVRPELPAVGGNEGVGEVVAVGS   94 (354)
T ss_pred             ccccccceeeecccCCchhhheeecccCCCCCCCceeeeeeecCCChHHhhhhccccCCCCCCCcccCCcceEEEEEecC
Confidence            45577899999999998   788999999988888999999999999999999999985 57899999999999999999


Q ss_pred             CCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCce
Q 025895           81 GVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSV  160 (246)
Q Consensus        81 ~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  160 (246)
                      .+..|++||+|+..+.                              +                  .|+|++|.+..++.+
T Consensus        95 ~vkgfk~Gd~VIp~~a------------------------------~------------------lGtW~t~~v~~e~~L  126 (354)
T KOG0025|consen   95 NVKGFKPGDWVIPLSA------------------------------N------------------LGTWRTEAVFSESDL  126 (354)
T ss_pred             CcCccCCCCeEeecCC------------------------------C------------------CccceeeEeecccce
Confidence            9999999999986643                              2                  349999999999999


Q ss_pred             EEcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHH----HH
Q 025895          161 AKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD----RG  235 (246)
Q Consensus       161 ~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~----~~  235 (246)
                      +++++.++.+.||++.++..|||+.|.+-.++.+||+|+-.|+ +.+|++.+|+|++.|+ +.|-+.|+....+    .+
T Consensus       127 i~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQNganS~VG~~ViQlaka~Gi-ktinvVRdR~~ieel~~~L  205 (354)
T KOG0025|consen  127 IKVDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALGI-KTINVVRDRPNIEELKKQL  205 (354)
T ss_pred             EEcCCcCChhhhheeccCchHHHHHHHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhCc-ceEEEeecCccHHHHHHHH
Confidence            9999999999999999999999999999999999999999998 9999999999999999 5555556654444    55


Q ss_pred             hhcCCCcccc
Q 025895          236 MSCVSSSKYH  245 (246)
Q Consensus       236 ~~lg~~~~~~  245 (246)
                      +.+||+++.+
T Consensus       206 k~lGA~~ViT  215 (354)
T KOG0025|consen  206 KSLGATEVIT  215 (354)
T ss_pred             HHcCCceEec
Confidence            6799997653

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.97  E-value=6.8e-30  Score=224.58  Aligned_cols=215  Identities=28%  Similarity=0.353  Sum_probs=184.2

Q ss_pred             eeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCCCE
Q 025895           11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDH   90 (246)
Q Consensus        11 ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd~   90 (246)
                      |+++.+..+..+++++++.|.+.++||+||+.++++|+.|...+.+......+|.++|||++|+|+++|+++.+|++||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~p~~~~~evlirv~a~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~   80 (337)
T cd05283           1 KGYAARDASGKLEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWGPTKYPLVPGHEIVGIVVAVGSKVTKFKVGDR   80 (337)
T ss_pred             CceEEecCCCCceEEeccCCCCCCCeEEEEEEEecccchHHHHhcCCcCCCCCCcccCcceeeEEEEECCCCcccCCCCE
Confidence            57788887777999999999999999999999999999999998887655567889999999999999999999999999


Q ss_pred             EEee-CCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCc
Q 025895           91 VIPC-YQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL  169 (246)
Q Consensus        91 V~~~-~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~  169 (246)
                      |++. ....|++|.+|..+..++|....... .|              +........|+|++|+.++.+.++++|+++++
T Consensus        81 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------------~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~  145 (337)
T cd05283          81 VGVGCQVDSCGTCEQCKSGEEQYCPKGVVTY-NG--------------KYPDGTITQGGYADHIVVDERFVFKIPEGLDS  145 (337)
T ss_pred             EEEecCCCCCCCCccccCCchhcCcchhhcc-cc--------------cccCCCcCCCcceeEEEechhheEECCCCCCH
Confidence            9743 45689999999999999998754310 01              00000122459999999999999999999999


Q ss_pred             hhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       170 ~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      ++++.+.+...+||.++.. ..+.++++|+|.|+|.+|++++++++.+|+ +++++++++++++.++++|++.
T Consensus       146 ~~aa~l~~~~~ta~~~~~~-~~~~~g~~vlV~g~g~vG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~  216 (337)
T cd05283         146 AAAAPLLCAGITVYSPLKR-NGVGPGKRVGVVGIGGLGHLAVKFAKALGA-EVTAFSRSPSKKEDALKLGADE  216 (337)
T ss_pred             HHhhhhhhHHHHHHHHHHh-cCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHcCCcE
Confidence            9999999999999997644 568999999998889999999999999999 8999999999999999999873

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.97  E-value=1.1e-29  Score=221.32  Aligned_cols=202  Identities=25%  Similarity=0.436  Sum_probs=174.6

Q ss_pred             eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCCC
Q 025895           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (246)
Q Consensus        10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd   89 (246)
                      |||+++.++++ ++++++|.|+++++||+||+.++++|+.|...+.+.++   .|.++|||++|+|+++|++   +++||
T Consensus         1 ~~a~~~~~~~~-~~~~~~~~p~~~~~~vlV~v~a~~i~~~d~~~~~g~~~---~~~~~G~e~~G~Vv~~G~~---~~~G~   73 (319)
T cd08242           1 MKALVLDGGLD-LRVEDLPKPEPPPGEALVRVLLAGICNTDLEIYKGYYP---FPGVPGHEFVGIVEEGPEA---ELVGK   73 (319)
T ss_pred             CeeEEEeCCCc-EEEEECCCCCCCCCeEEEEEEEEEEccccHHHHcCCCC---CCCccCceEEEEEEEeCCC---CCCCC
Confidence            68999998765 99999999999999999999999999999998877653   5788999999999999988   67999


Q ss_pred             EEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCc
Q 025895           90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL  169 (246)
Q Consensus        90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~  169 (246)
                      +|...+..+|+.|.+|..+....|...+.   .++...+|                  +|++|+.++.+.++++|++++.
T Consensus        74 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g------------------~~~~~~~v~~~~~~~lP~~~~~  132 (319)
T cd08242          74 RVVGEINIACGRCEYCRRGLYTHCPNRTV---LGIVDRDG------------------AFAEYLTLPLENLHVVPDLVPD  132 (319)
T ss_pred             eEEECCCcCCCCChhhhCcCcccCCCCcc---cCccCCCC------------------ceEEEEEechHHeEECcCCCCH
Confidence            99999988999999999998888886543   22211233                  8999999999999999999999


Q ss_pred             hhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       170 ~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      ++++.+ ..+.++|. +.+..+++++++|||+|+|.+|++++|+|+.+|+ +|++++.++++++.++++|++.
T Consensus       133 ~~aa~~-~~~~~~~~-~~~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~  202 (319)
T cd08242         133 EQAVFA-EPLAAALE-ILEQVPITPGDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALARRLGVET  202 (319)
T ss_pred             HHhhhh-hHHHHHHH-HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHcCCcE
Confidence            888764 34455665 4577889999999999889999999999999999 6999999999999999999874

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=99.97  E-value=5.9e-30  Score=222.68  Aligned_cols=184  Identities=26%  Similarity=0.349  Sum_probs=150.3

Q ss_pred             ceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecc-hhhhhhhcCCCCC---CCCCcccccceEEEEEEcCCCCCc
Q 025895            9 TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALC-HTDAYTWSGKDPE---GLFPCILGHEAAGIVESVGEGVTE   84 (246)
Q Consensus         9 ~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~-~~D~~~~~~~~~~---~~~p~v~G~e~vG~V~~vG~~~~~   84 (246)
                      ++|++++.+++. ++++|.|.|+|++|||+||+++++|| ++|++.+.|.++.   ..+|.++|||++|+|+++|+++ +
T Consensus         1 ~~ka~~~~~~~~-l~~~e~~~p~~~~~evlVkv~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~V~~vG~~v-~   78 (308)
T TIGR01202         1 KTQAIVLSGPNQ-IELREVTLTPPSPGDLVVEIWYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGRVVEAGPDT-G   78 (308)
T ss_pred             CceEEEEeCCCe-EEEEEecCCCCCCCeEEEEEEEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEEEEEecCCC-C
Confidence            578999998876 99999999999999999999999996 7999988886543   2579999999999999999998 6


Q ss_pred             cCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcC
Q 025895           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (246)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip  164 (246)
                      |++||||+...    ..|..|..               |   .+                  |+|+||+.+|.+.++++|
T Consensus        79 ~~vGdrV~~~~----~~c~~~~~---------------~---~~------------------G~~aey~~v~~~~~~~ip  118 (308)
T TIGR01202        79 FRPGDRVFVPG----SNCYEDVR---------------G---LF------------------GGASKRLVTPASRVCRLD  118 (308)
T ss_pred             CCCCCEEEEeC----cccccccc---------------c---cC------------------CcccceEEcCHHHceeCC
Confidence            99999998632    22322110               0   12                  399999999999999999


Q ss_pred             CCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhc
Q 025895          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSC  238 (246)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~l  238 (246)
                      ++++++. +.+. ...+||+++.. . ..++++++|+|+|++|++++|+|+++|++.|++++.+++|++.+.++
T Consensus       119 ~~~~~~~-a~~~-~~~~a~~~~~~-~-~~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~  188 (308)
T TIGR01202       119 PALGPQG-ALLA-LAATARHAVAG-A-EVKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY  188 (308)
T ss_pred             CCCCHHH-Hhhh-HHHHHHHHHHh-c-ccCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc
Confidence            9999865 4444 56889997744 3 33578999999999999999999999996688888888888877654

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=1.8e-29  Score=220.29  Aligned_cols=203  Identities=30%  Similarity=0.391  Sum_probs=174.6

Q ss_pred             eeeeEeecCC-CCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCC
Q 025895           10 CKAAVAWEPN-KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (246)
Q Consensus        10 ~ka~~~~~~~-~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~G   88 (246)
                      ||++++..++ +.+++++.+.|+++++||+||+.++++|++|...+.+. ....+|.++|||++|+|+++|+++.++++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~v~v~~~~i~~~d~~~~~~~-~~~~~~~~~g~e~~G~v~~vG~~v~~~~~G   79 (325)
T cd08264           1 MKALVFEKSGIENLKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINAV-KVKPMPHIPGAEFAGVVEEVGDHVKGVKKG   79 (325)
T ss_pred             CeeEEeccCCCCceEEEeccCCCCCCCeEEEEEEEEEechHHHHHHhCC-CCCCCCeecccceeEEEEEECCCCCCCCCC
Confidence            6899987665 45889999988899999999999999999999887642 222457789999999999999999999999


Q ss_pred             CEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCC
Q 025895           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP  168 (246)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~  168 (246)
                      |+|+..+...|+.|.+|..++.+.|.++..   .|+. .                  .|+|++|+.++...++++|++++
T Consensus        80 d~V~~~~~~~~~~c~~~~~~~~~~~~~~~~---~~~~-~------------------~g~~~~~~~v~~~~~~~~p~~~~  137 (325)
T cd08264          80 DRVVVYNRVFDGTCDMCLSGNEMLCRNGGI---IGVV-S------------------NGGYAEYIVVPEKNLFKIPDSIS  137 (325)
T ss_pred             CEEEECCCcCCCCChhhcCCCccccCccce---eecc-C------------------CCceeeEEEcCHHHceeCCCCCC
Confidence            999999988999999999999999997543   2221 2                  24899999999999999999999


Q ss_pred             chhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       169 ~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      +++++.+++.+.++|+++.. .+++++++|+|+|+ |.+|++++++|+.+|+ +|+++++    .+.++++|++
T Consensus       138 ~~~~~~~~~~~~~a~~~l~~-~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~-~v~~~~~----~~~~~~~g~~  205 (325)
T cd08264         138 DELAASLPVAALTAYHALKT-AGLGPGETVVVFGASGNTGIFAVQLAKMMGA-EVIAVSR----KDWLKEFGAD  205 (325)
T ss_pred             HHHhhhhhhhhHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeH----HHHHHHhCCC
Confidence            99999999999999998754 88999999999998 9999999999999999 7888752    3666777765

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=99.97  E-value=2.2e-29  Score=220.24  Aligned_cols=209  Identities=34%  Similarity=0.517  Sum_probs=187.8

Q ss_pred             eeeeEeecCCCC-eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCC-CCCCCcccccceEEEEEEcCCCCCccCC
Q 025895           10 CKAAVAWEPNKP-LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCILGHEAAGIVESVGEGVTEVQP   87 (246)
Q Consensus        10 ~ka~~~~~~~~~-~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~-~~~~p~v~G~e~vG~V~~vG~~~~~~~~   87 (246)
                      ||++++..++++ +.+.+.|.|.+.+++|+||+.++++|+.|...+.+.+. ...+|.++|+|++|+|+.+|+++..+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~g~~~~G~v~~~G~~v~~~~~   80 (338)
T cd08254           1 MKAWRFHKGSKGLLVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVEVGAGVTNFKV   80 (338)
T ss_pred             CeeEEEecCCCCceEEeccCCCCCCCCeEEEEEEEEeeccHhHHHHcCCCcccCCCCEeccccccEEEEEECCCCccCCC
Confidence            799999999998 68888999999999999999999999999999888765 3356789999999999999999999999


Q ss_pred             CCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCC
Q 025895           88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA  167 (246)
Q Consensus        88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~  167 (246)
                      ||+|+.++..+|+.|.+|..+..+.|..+..   .|.. .+|                  +|++|+.++.+.++++|+++
T Consensus        81 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~g------------------~~~~~~~~~~~~~~~lp~~~  138 (338)
T cd08254          81 GDRVAVPAVIPCGACALCRRGRGNLCLNQGM---PGLG-IDG------------------GFAEYIVVPARALVPVPDGV  138 (338)
T ss_pred             CCEEEECCCCCCCCChhhhCcCcccCCCCCc---cccc-cCC------------------cceeeEEechHHeEECCCCC
Confidence            9999999999999999999999999976543   2222 233                  89999999999999999999


Q ss_pred             CchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      ++.+++.+.+++.+||+++.....++++++|||.|+|.+|++++++|+.+|+ +|++++.++++.+.++++|.+
T Consensus       139 ~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~~g~~  211 (338)
T cd08254         139 PFAQAAVATDAVLTPYHAVVRAGEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKELGAD  211 (338)
T ss_pred             CHHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhCCC
Confidence            9999999999999999988777889999999998889999999999999999 799999999999999988875

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=2.6e-29  Score=220.53  Aligned_cols=205  Identities=35%  Similarity=0.561  Sum_probs=180.0

Q ss_pred             eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCCC
Q 025895           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (246)
Q Consensus        10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd   89 (246)
                      |||+++++++. +++.++|.|.++++||+|||.++++|+.|.....+..+...+|.++|+|++|+|+++|++++.+++||
T Consensus         1 ~~a~~~~~~~~-~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~Gd   79 (337)
T cd08261           1 MKALVCEKPGR-LEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPFASYPRILGHELSGEVVEVGEGVAGLKVGD   79 (337)
T ss_pred             CeEEEEeCCCc-eEEEECCCCCCCCCeEEEEEEEEeEcccChHHHcCCCCcCCCCcccccccEEEEEEeCCCCCCCCCCC
Confidence            68999998876 99999999999999999999999999999998887765545678999999999999999999999999


Q ss_pred             EEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCc
Q 025895           90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL  169 (246)
Q Consensus        90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~  169 (246)
                      +|+..+...|+.|+.|..+..+.|.....   .++. .                  .|+|++|+.++.+ ++++|+++++
T Consensus        80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~------------------~g~~~~~v~v~~~-~~~~p~~~~~  136 (337)
T cd08261          80 RVVVDPYISCGECYACRKGRPNCCENLQV---LGVH-R------------------DGGFAEYIVVPAD-ALLVPEGLSL  136 (337)
T ss_pred             EEEECCCCCCCCChhhhCcCcccCCCCCe---eeec-C------------------CCcceeEEEechh-eEECCCCCCH
Confidence            99998888999999999999999964321   1111 1                  2389999999999 9999999999


Q ss_pred             hhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       170 ~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      ++++.+ ..+.++++++ ....+.++++|||+|+|.+|.+++|+|+.+|+ +|+++.+++++.+.++++|++
T Consensus       137 ~~aa~~-~~~~~a~~~~-~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~-~v~~~~~s~~~~~~~~~~g~~  205 (337)
T cd08261         137 DQAALV-EPLAIGAHAV-RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFARELGAD  205 (337)
T ss_pred             HHhhhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEECCCHHHHHHHHHhCCC
Confidence            998876 5677788765 77889999999999889999999999999999 899999999999999989876

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=99.97  E-value=3.5e-29  Score=218.94  Aligned_cols=207  Identities=32%  Similarity=0.487  Sum_probs=183.4

Q ss_pred             eeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCCCE
Q 025895           11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDH   90 (246)
Q Consensus        11 ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd~   90 (246)
                      ||+++.+++..+++++.|.|.+.+++|+||+.++++|+.|...+.+......+|.++|||++|+|+++|+++.++++||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~v~~~g~~~~~~~~Gd~   80 (330)
T cd08245           1 KAAVVHAAGGPLEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGGSKYPLVPGHEIVGEVVEVGAGVEGRKVGDR   80 (330)
T ss_pred             CeEEEecCCCCceEEeccCCCCCCCeEEEEEEEEeccHHHHHHHcCCCCCCCCCcccCccceEEEEEECCCCcccccCCE
Confidence            68899999666999999999999999999999999999999988887644456789999999999999999999999999


Q ss_pred             EEeeCC-CCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCc
Q 025895           91 VIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL  169 (246)
Q Consensus        91 V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~  169 (246)
                      |++.+. .+|++|.+|..+..+.|.+....   ++. .+                  |+|++|+.++.+.++++|+++++
T Consensus        81 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~------------------g~~~~~~~v~~~~~~~~p~~~~~  138 (330)
T cd08245          81 VGVGWLVGSCGRCEYCRRGLENLCQKAVNT---GYT-TQ------------------GGYAEYMVADAEYTVLLPDGLPL  138 (330)
T ss_pred             EEEccccCCCCCChhhhCcCcccCcCcccc---Ccc-cC------------------CccccEEEEcHHHeEECCCCCCH
Confidence            988664 67999999999999999986431   211 12                  38999999999999999999999


Q ss_pred             hhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       170 ~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      .+++.+.+...++|.++.. ..+.++++|+|+|+|.+|++++++|+.+|+ +|+++++++++.+.++++|++
T Consensus       139 ~~~~~l~~~~~ta~~~l~~-~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~  208 (330)
T cd08245         139 AQAAPLLCAGITVYSALRD-AGPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARKLGAD  208 (330)
T ss_pred             HHhhhhhhhHHHHHHHHHh-hCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhCCc
Confidence            9999999999999998744 788999999999888899999999999999 899999999999999888876

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=99.97  E-value=3e-29  Score=220.59  Aligned_cols=208  Identities=28%  Similarity=0.428  Sum_probs=176.2

Q ss_pred             eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCC---CCCCCCcccccceEEEEEEcCCCCCccC
Q 025895           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD---PEGLFPCILGHEAAGIVESVGEGVTEVQ   86 (246)
Q Consensus        10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~---~~~~~p~v~G~e~vG~V~~vG~~~~~~~   86 (246)
                      ||++++.++++.+++.+.|.|.|+++||+||++++++|++|..++.+..   ....+|.++|||++|+|+++|++++.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~   80 (341)
T PRK05396          1 MKALVKLKAEPGLWLTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSEVTGFK   80 (341)
T ss_pred             CceEEEecCCCceEEEECCCCCCCCCeEEEEEEEEEEcccchHhhcCCCcccccCCCCcccceeeEEEEEEeCCCCCcCC
Confidence            6899999988889999999999999999999999999999998765532   1224678899999999999999999999


Q ss_pred             CCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCC
Q 025895           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (246)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~  166 (246)
                      +||+|+..+..+|+.|.+|..+..++|.....   .+.. .                  .|+|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~------------------~g~~~~~~~v~~~~~~~iP~~  138 (341)
T PRK05396         81 VGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKG---VGVN-R------------------PGAFAEYLVIPAFNVWKIPDD  138 (341)
T ss_pred             CCCEEEECCCCCCCCChhhhCcChhhCCCcce---eeec-C------------------CCcceeeEEechHHeEECcCC
Confidence            99999999999999999999999999986431   2211 2                  349999999999999999999


Q ss_pred             CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      +++++++.+ ..+.+++.++..  ...++++|+|.|+|.+|++++|+|+.+|+..|+++++++++.+.++++|++.
T Consensus       139 l~~~~~~~~-~~~~~~~~~~~~--~~~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~  211 (341)
T PRK05396        139 IPDDLAAIF-DPFGNAVHTALS--FDLVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATR  211 (341)
T ss_pred             CCHHHhHhh-hHHHHHHHHHHc--CCCCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcE
Confidence            999888754 455666554432  3458999999988999999999999999966888889999999999999873

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=3.8e-29  Score=219.75  Aligned_cols=196  Identities=24%  Similarity=0.422  Sum_probs=169.9

Q ss_pred             eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCC-----------CCCCCcccccceEEEEEEc
Q 025895           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-----------EGLFPCILGHEAAGIVESV   78 (246)
Q Consensus        10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~-----------~~~~p~v~G~e~vG~V~~v   78 (246)
                      |||+++.++  +++++++|.|++++++|+||+.++++|+.|...+.+...           ...+|.++|+|++|+|+++
T Consensus         1 m~a~~~~~~--~~~~~~~~~p~~~~~~v~V~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~v   78 (341)
T cd08262           1 MRAAVFRDG--PLVVRDVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEVVDY   78 (341)
T ss_pred             CceEEEeCC--ceEEEecCCCCCCCCeEEEEEEEEEEcccchHHHcCCCcccccccccccccCCCCcccccceeEEEEEe
Confidence            689999877  599999999999999999999999999999998877321           2235788999999999999


Q ss_pred             CCCCCc-cCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeec
Q 025895           79 GEGVTE-VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD  157 (246)
Q Consensus        79 G~~~~~-~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~  157 (246)
                      |+++++ +++||+|+..+...|+.|..|..++.+              ..                  .|+|++|+.++.
T Consensus        79 G~~v~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~--------------~~------------------~g~~~~~~~v~~  126 (341)
T cd08262          79 GPGTERKLKVGTRVTSLPLLLCGQGASCGIGLSP--------------EA------------------PGGYAEYMLLSE  126 (341)
T ss_pred             CCCCcCCCCCCCEEEecCCcCCCCChhhhCCCCc--------------CC------------------CCceeeeEEech
Confidence            999987 999999999999999999999332110              01                  238999999999


Q ss_pred             CceEEcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          158 VSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       158 ~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      +.++++|+++++++++ +++++.++|++ ....+++++++|||+|+|.+|.+++|+|+.+|+..++++++++++.+.+++
T Consensus       127 ~~~~~lP~~~s~~~a~-~~~~~~~a~~~-~~~~~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~  204 (341)
T cd08262         127 ALLLRVPDGLSMEDAA-LTEPLAVGLHA-VRRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALA  204 (341)
T ss_pred             HHeEECCCCCCHHHhh-hhhhHHHHHHH-HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence            9999999999998877 56688889987 477889999999999889999999999999999668888889999999999


Q ss_pred             cCCC
Q 025895          238 CVSS  241 (246)
Q Consensus       238 lg~~  241 (246)
                      +|++
T Consensus       205 ~g~~  208 (341)
T cd08262         205 MGAD  208 (341)
T ss_pred             cCCc
Confidence            9986

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=99.97  E-value=6e-29  Score=218.81  Aligned_cols=208  Identities=30%  Similarity=0.448  Sum_probs=175.9

Q ss_pred             eeeeEeecCCCCeEEEEeecCCC-CCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCC
Q 025895           10 CKAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (246)
Q Consensus        10 ~ka~~~~~~~~~~~~~e~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~G   88 (246)
                      ||++++.++++ +++++.|.|.| +++||+||+.++++|++|+..+.+..+. ..|.++|||++|+|+++|+++..+++|
T Consensus         1 m~~~~~~~~~~-~~~~~~~~p~~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~-~~~~~~g~e~~G~V~~vG~~v~~~~~G   78 (345)
T cd08287           1 MRATVIHGPGD-IRVEEVPDPVIEEPTDAVIRVVATCVCGSDLWPYRGVSPT-RAPAPIGHEFVGVVEEVGSEVTSVKPG   78 (345)
T ss_pred             CceeEEecCCc-eeEEeCCCCCCCCCCeEEEEEeeeeecccchhhhcCCCCC-CCCcccccceEEEEEEeCCCCCccCCC
Confidence            78999998776 99999999997 8999999999999999999888776543 347899999999999999999999999


Q ss_pred             CEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecC--ceEEcCCC
Q 025895           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQ  166 (246)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~ip~~  166 (246)
                      |+|+......|+.|.+|..++.++|.+...   .|.. .+|                  +|++|+.++.+  .++++|++
T Consensus        79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~g------------------~~~~~~~v~~~~~~~~~lP~~  136 (345)
T cd08287          79 DFVIAPFAISDGTCPFCRAGFTTSCVHGGF---WGAF-VDG------------------GQGEYVRVPLADGTLVKVPGS  136 (345)
T ss_pred             CEEEeccccCCCCChhhhCcCcccCCCCCc---ccCC-CCC------------------ceEEEEEcchhhCceEECCCC
Confidence            999886667899999999999999986542   2211 334                  89999999974  99999999


Q ss_pred             CCchhhh-----hccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          167 APLDKVC-----LLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       167 ~~~~~aa-----~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      ++++.+.     .+.+.+.++|+++ ...+++++++|+|.|+|.+|++++++|+++|+..++++++++++.+.++++|++
T Consensus       137 l~~~~~~~~~~~~l~~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~ga~  215 (345)
T cd08287         137 PSDDEDLLPSLLALSDVMGTGHHAA-VSAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGAT  215 (345)
T ss_pred             CChhhhhhhhhHhhhcHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc
Confidence            9873221     1225677888876 467889999999988899999999999999996699999999999999999986


Q ss_pred             c
Q 025895          242 S  242 (246)
Q Consensus       242 ~  242 (246)
                      .
T Consensus       216 ~  216 (345)
T cd08287         216 D  216 (345)
T ss_pred             e
Confidence            3

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=5.9e-29  Score=222.57  Aligned_cols=208  Identities=28%  Similarity=0.475  Sum_probs=175.4

Q ss_pred             ceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCC------C-CCCCCcccccceEEEEEEcCCC
Q 025895            9 TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD------P-EGLFPCILGHEAAGIVESVGEG   81 (246)
Q Consensus         9 ~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~------~-~~~~p~v~G~e~vG~V~~vG~~   81 (246)
                      .+...++..+ + ++++++|.|++++++|+||+.++++|++|+..+.+..      + ...+|.++|||++|+|+++|++
T Consensus        28 ~~~~~~~~~~-~-~~~~~~~~p~~~~~ev~V~v~a~gi~~~D~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~  105 (384)
T cd08265          28 NLGSKVWRYP-E-LRVEDVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVVEKTGKN  105 (384)
T ss_pred             cceeEEEeCC-C-EEEEECCCCCCCCCEEEEEEEEEEEcHhHHHHHcCCCCcccccCcccCCCcccccceEEEEEEECCC
Confidence            3445555543 3 9999999999999999999999999999998776321      1 1346789999999999999999


Q ss_pred             CCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceE
Q 025895           82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVA  161 (246)
Q Consensus        82 ~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  161 (246)
                      +++|++||+|++.+..+|+.|..|..+..++|..+..   .|+. .+|                  +|++|+.++.+.++
T Consensus       106 v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~---~g~~-~~g------------------~~~~~v~v~~~~~~  163 (384)
T cd08265         106 VKNFEKGDPVTAEEMMWCGMCRACRSGSPNHCKNLKE---LGFS-ADG------------------AFAEYIAVNARYAW  163 (384)
T ss_pred             CCCCCCCCEEEECCCCCCCCChhhhCcCcccCCCcce---eeec-CCC------------------cceeeEEechHHeE
Confidence            9999999999999999999999999999999987542   2322 234                  89999999999999


Q ss_pred             EcCCCC-------Cchhhhhccccchhhhhhhhhh-CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 025895          162 KIDPQA-------PLDKVCLLGCGVPTGLGAVWNT-AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (246)
Q Consensus       162 ~ip~~~-------~~~~aa~l~~~~~ta~~~l~~~-~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~  233 (246)
                      ++|+++       +++ ++.+..++.++|+++... .+++++++|+|+|+|.+|++++++|+.+|+..|++++++++|.+
T Consensus       164 ~lP~~~~~~~~~~~~~-~a~~~~~~~ta~~al~~~~~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~  242 (384)
T cd08265         164 EINELREIYSEDKAFE-AGALVEPTSVAYNGLFIRGGGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRN  242 (384)
T ss_pred             ECCccccccccCCCHH-HhhhhhHHHHHHHHHHhhcCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHH
Confidence            999863       444 555666888999987655 68999999999988999999999999999977999999999999


Q ss_pred             HHhhcCCC
Q 025895          234 RGMSCVSS  241 (246)
Q Consensus       234 ~~~~lg~~  241 (246)
                      +++++|++
T Consensus       243 ~~~~~g~~  250 (384)
T cd08265         243 LAKEMGAD  250 (384)
T ss_pred             HHHHcCCC
Confidence            99999986

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=99.97  E-value=1.3e-28  Score=216.45  Aligned_cols=207  Identities=32%  Similarity=0.516  Sum_probs=180.8

Q ss_pred             eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCCC
Q 025895           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (246)
Q Consensus        10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd   89 (246)
                      |||+++.+++. +.+++.+.|.+.+++|+||+.++++|+.|+..+.+.+....+|.++|+|++|+|+++|++++.+++||
T Consensus         1 ~~~~~~~~~~~-~~~~~~~~~~l~~~~v~i~v~~~~l~~~d~~~~~g~~~~~~~~~~~g~~~~G~V~~~G~~v~~~~~Gd   79 (343)
T cd08235           1 MKAAVLHGPND-VRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHTDLKPPRILGHEIAGEIVEVGDGVTGFKVGD   79 (343)
T ss_pred             CeEEEEecCCc-eEEEEccCCCCCCCeEEEEEEEeeeccccHHHHcCCCccCCCCcccccceEEEEEeeCCCCCCCCCCC
Confidence            68999988875 99999999999999999999999999999998887654334577999999999999999999999999


Q ss_pred             EEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCc-----eEEcC
Q 025895           90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVS-----VAKID  164 (246)
Q Consensus        90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~ip  164 (246)
                      +|+..+...|+.|.+|..++.+.|.....   .|.                   ...|+|++|+.++.+.     ++++|
T Consensus        80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-------------------~~~g~~~~~v~v~~~~~~~~~~~~lP  137 (343)
T cd08235          80 RVFVAPHVPCGECHYCLRGNENMCPNYKK---FGN-------------------LYDGGFAEYVRVPAWAVKRGGVLKLP  137 (343)
T ss_pred             EEEEccCCCCCCChHHHCcCcccCCCcce---ecc-------------------CCCCcceeeEEecccccccccEEECC
Confidence            99999999999999999999999987543   111                   1234999999999988     99999


Q ss_pred             CCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      +++++.+++.+ +.+.+||+++. ...++++++|+|+|+|.+|++++++|+.+|++.++++++++++.+.++++|++
T Consensus       138 ~~~~~~~aa~~-~~~~~a~~~l~-~~~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~~g~~  212 (343)
T cd08235         138 DNVSFEEAALV-EPLACCINAQR-KAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGAD  212 (343)
T ss_pred             CCCCHHHHHhh-hHHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCc
Confidence            99999998876 68889999874 45899999999998899999999999999994399999999999988888875

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=1.2e-28  Score=215.07  Aligned_cols=209  Identities=29%  Similarity=0.438  Sum_probs=181.9

Q ss_pred             eeeeEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCCccC
Q 025895           10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ   86 (246)
Q Consensus        10 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~~~~   86 (246)
                      |||+++...+.+  +++++.+.|.+.+++|+||+.++++|++|+..+.+.... ...|.++|||++|+|+++|+++..++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (342)
T cd08266           1 MKAVVIRGHGGPEVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHILGSDGAGVVEAVGPGVTNVK   80 (342)
T ss_pred             CeEEEEecCCCccceeEeecCCCCCCCCeEEEEEEeeecCHHHHHHhcCCCCCCCCCCeecccceEEEEEEeCCCCCCCC
Confidence            689998844332  888888888899999999999999999999988876532 24578999999999999999998999


Q ss_pred             CCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCC
Q 025895           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (246)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~  166 (246)
                      +||+|++.+...|+.|.+|..+..+.|.....   .|.. ..                  |+|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~-~~------------------g~~~~~~~~~~~~~~~~p~~  138 (342)
T cd08266          81 PGQRVVIYPGISCGRCEYCLAGRENLCAQYGI---LGEH-VD------------------GGYAEYVAVPARNLLPIPDN  138 (342)
T ss_pred             CCCEEEEccccccccchhhccccccccccccc---cccc-cC------------------cceeEEEEechHHceeCCCC
Confidence            99999999999999999999999999986432   2221 22                  38999999999999999999


Q ss_pred             CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      +++.+++.+++++.++|+++.+...+.++++++|+|+ +.+|++++++++.+|+ +++.+++++++.+.+.+++.+
T Consensus       139 ~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~  213 (342)
T cd08266         139 LSFEEAAAAPLTFLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGA-TVIATAGSEDKLERAKELGAD  213 (342)
T ss_pred             CCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCC
Confidence            9999999998889999998878888999999999998 7999999999999999 899999999999888877764

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=99.97  E-value=6e-29  Score=217.33  Aligned_cols=182  Identities=23%  Similarity=0.246  Sum_probs=156.2

Q ss_pred             eeeeEeecCCCC-----eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCC
Q 025895           10 CKAAVAWEPNKP-----LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVT   83 (246)
Q Consensus        10 ~ka~~~~~~~~~-----~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~   83 (246)
                      |||+++.++++|     ++++++|.|.|+++||+||+.++++|++|+..+.+.++. ..+|.++|||++|+|+++|+++.
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~gi~~~d~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~   80 (324)
T cd08291           1 MKALLLEEYGKPLEVKELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGSTKALPVPPGFEGSGTVVAAGGGPL   80 (324)
T ss_pred             CeEEEEeecCCCccccEEEecccCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCcCCCcceEEEEEEECCCcc
Confidence            689999988853     888999999999999999999999999999988886543 35689999999999999999998


Q ss_pred             c-cCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEE
Q 025895           84 E-VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAK  162 (246)
Q Consensus        84 ~-~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  162 (246)
                      + |++||+|+..+.                              .+|                  +|++|+.+|.+.+++
T Consensus        81 ~~~~vGd~V~~~~~------------------------------~~g------------------~~a~~~~v~~~~~~~  112 (324)
T cd08291          81 AQSLIGKRVAFLAG------------------------------SYG------------------TYAEYAVADAQQCLP  112 (324)
T ss_pred             ccCCCCCEEEecCC------------------------------CCC------------------cchheeeecHHHeEE
Confidence            6 999999985421                              123                  899999999999999


Q ss_pred             cCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEE--CCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCC
Q 025895          163 IDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF--GLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVS  240 (246)
Q Consensus       163 ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~--Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~  240 (246)
                      +|+++++++++.+++...|+|. +...... ++++++|+  |+|.+|++++|+|+.+|+ +|++++++++|++.++++|+
T Consensus       113 iP~~~~~~~aa~~~~~~~ta~~-~~~~~~~-~~~~vlv~~~g~g~vG~~a~q~a~~~G~-~vi~~~~~~~~~~~~~~~g~  189 (324)
T cd08291         113 LPDGVSFEQGASSFVNPLTALG-MLETARE-EGAKAVVHTAAASALGRMLVRLCKADGI-KVINIVRRKEQVDLLKKIGA  189 (324)
T ss_pred             CCCCCCHHHHhhhcccHHHHHH-HHHhhcc-CCCcEEEEccCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCC
Confidence            9999999999988888889975 4455555 45566665  459999999999999999 89999999999999999999


Q ss_pred             Cc
Q 025895          241 SS  242 (246)
Q Consensus       241 ~~  242 (246)
                      +.
T Consensus       190 ~~  191 (324)
T cd08291         190 EY  191 (324)
T ss_pred             cE
Confidence            74

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=99.96  E-value=2.3e-28  Score=214.97  Aligned_cols=206  Identities=32%  Similarity=0.497  Sum_probs=181.1

Q ss_pred             eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCCC
Q 025895           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (246)
Q Consensus        10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd   89 (246)
                      |||+++++.++ +.+++.|.|++.++||+||+.++++|+.|.....+.+. ..+|.++|+|++|+|+++|+++..|++||
T Consensus         1 ~~a~~~~~~~~-l~~~~~~~~~l~~~~v~v~v~~~~~n~~d~~~~~~~~~-~~~~~~~g~~~~G~V~~~g~~v~~~~~Gd   78 (343)
T cd08236           1 MKALVLTGPGD-LRYEDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTGA-YHPPLVLGHEFSGTVEEVGSGVDDLAVGD   78 (343)
T ss_pred             CeeEEEecCCc-eeEEecCCCCCCCCeEEEEEEEEEECccchHhhcCCCC-CCCCcccCcceEEEEEEECCCCCcCCCCC
Confidence            68999999876 99999999999999999999999999999988777652 24578899999999999999999999999


Q ss_pred             EEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCc
Q 025895           90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL  169 (246)
Q Consensus        90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~  169 (246)
                      +|+..+...|+.|.+|..+..+.|.....   .|.                   .+.|+|++|+.++.+.++++|+++++
T Consensus        79 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-------------------~~~g~~~~~~~~~~~~~~~lP~~~~~  136 (343)
T cd08236          79 RVAVNPLLPCGKCEYCKKGEYSLCSNYDY---IGS-------------------RRDGAFAEYVSVPARNLIKIPDHVDY  136 (343)
T ss_pred             EEEEcCCCCCCCChhHHCcChhhCCCcce---Eec-------------------ccCCcccceEEechHHeEECcCCCCH
Confidence            99999888999999999999999987532   121                   12349999999999999999999999


Q ss_pred             hhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       170 ~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      ++++.+ ....++|.++. ...++++++|+|+|+|.+|++++++|+.+|+..++++++++++.+.++++|++
T Consensus       137 ~~aa~~-~~~~ta~~~l~-~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~  206 (343)
T cd08236         137 EEAAMI-EPAAVALHAVR-LAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGAD  206 (343)
T ss_pred             HHHHhc-chHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCC
Confidence            998887 57889999874 77889999999998899999999999999994499999999999998888875

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.96  E-value=3.6e-28  Score=213.56  Aligned_cols=209  Identities=33%  Similarity=0.529  Sum_probs=183.0

Q ss_pred             eeeeEeecCC-CCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCCccCC
Q 025895           10 CKAAVAWEPN-KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQP   87 (246)
Q Consensus        10 ~ka~~~~~~~-~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~~~~~   87 (246)
                      |||++++.++ ..++++++|.|.+.+++|+||+.++++|+.|...+.+.++. ...|.++|||++|+|+++|+++..+++
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~vG~~~~~~~~   80 (341)
T cd08297           1 MKAAVVEEFGEKPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPVKPKLPLIGGHEGAGVVVAVGPGVSGLKV   80 (341)
T ss_pred             CceEEeeccCCCCceEEEeeCCCCCCCeEEEEEEEeecchhHHHHHcCCCCcCCCCCccCCcccceEEEEeCCCCCCCCC
Confidence            7899998876 33999999999999999999999999999999988876542 244678999999999999999999999


Q ss_pred             CCEEEeeC-CCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCC
Q 025895           88 GDHVIPCY-QAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (246)
Q Consensus        88 Gd~V~~~~-~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~  166 (246)
                      ||+|+..+ ...|+.|.+|..+....|.+...   .|+. ..                  |+|++|+.++.+.++++|++
T Consensus        81 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~------------------g~~~s~~~~~~~~~~~lp~~  138 (341)
T cd08297          81 GDRVGVKWLYDACGKCEYCRTGDETLCPNQKN---SGYT-VD------------------GTFAEYAIADARYVTPIPDG  138 (341)
T ss_pred             CCEEEEecCCCCCCCCccccCCCcccCCCccc---cccc-cC------------------CcceeEEEeccccEEECCCC
Confidence            99998876 57899999999999999987643   2221 22                  38999999999999999999


Q ss_pred             CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      +++.+++.+++...|||+++.. .+++++++|||+|+ +.+|++++++|+++|+ +|+++.+++++.+.++++|++.
T Consensus       139 ~~~~~~a~l~~~~~ta~~~~~~-~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~  213 (341)
T cd08297         139 LSFEQAAPLLCAGVTVYKALKK-AGLKPGDWVVISGAGGGLGHLGVQYAKAMGL-RVIAIDVGDEKLELAKELGADA  213 (341)
T ss_pred             CCHHHHHHHHcchHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCCcE
Confidence            9999999999999999998755 58999999999998 6799999999999999 8999999999999999999763

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=99.96  E-value=2.5e-28  Score=215.00  Aligned_cols=207  Identities=34%  Similarity=0.525  Sum_probs=176.2

Q ss_pred             eeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCC-CC--CCCCCcccccceEEEEEEcCCCCCccCCC
Q 025895           12 AAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK-DP--EGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (246)
Q Consensus        12 a~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~-~~--~~~~p~v~G~e~vG~V~~vG~~~~~~~~G   88 (246)
                      |++++++.. +++++.|.|.+.+++|+||+.++++|+.|...+.+. ..  ...+|.++|+|++|+|+++|+.++++++|
T Consensus         1 ~~~~~~~~~-~~~~~~~~~~l~~~~vlV~v~~~~l~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~G   79 (343)
T cd05285           1 AAVLHGPGD-LRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVGSGVTHLKVG   79 (343)
T ss_pred             CceEecCCc-eeEEECCCCCCCCCeEEEEEEEeeEccccHHHHccCCCcccCCCCCcccCcceeEEEEeeCCCCCCCCCC
Confidence            456777765 999999999999999999999999999998876322 11  12356789999999999999999999999


Q ss_pred             CEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCC
Q 025895           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP  168 (246)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~  168 (246)
                      |+|++.+..+|++|.+|..+..+.|.+....   +.....                  |+|++|+.++.+.++++|++++
T Consensus        80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~------------------g~~~~~~~v~~~~~~~lP~~~~  138 (343)
T cd05285          80 DRVAIEPGVPCRTCEFCKSGRYNLCPDMRFA---ATPPVD------------------GTLCRYVNHPADFCHKLPDNVS  138 (343)
T ss_pred             CEEEEccccCCCCChhHhCcCcccCcCcccc---ccccCC------------------CceeeeEEecHHHcEECcCCCC
Confidence            9999999999999999999999999875321   110022                  3899999999999999999999


Q ss_pred             chhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       169 ~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      +++++.+ ..+.++++++ ....++++++|+|.|+|.+|++++++|+.+|++.|+++++++++.+.++++|++.
T Consensus       139 ~~~aa~~-~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~  210 (343)
T cd05285         139 LEEGALV-EPLSVGVHAC-RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATH  210 (343)
T ss_pred             HHHhhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcE
Confidence            9998876 5778888875 7889999999999988999999999999999944999999999999999998873

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=99.96  E-value=3.3e-28  Score=213.63  Aligned_cols=208  Identities=28%  Similarity=0.468  Sum_probs=173.2

Q ss_pred             EeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhc-CCCC--CCCCCcccccceEEEEEEcCCCCCccCCCCE
Q 025895           14 VAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWS-GKDP--EGLFPCILGHEAAGIVESVGEGVTEVQPGDH   90 (246)
Q Consensus        14 ~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~-~~~~--~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd~   90 (246)
                      ++++.++ +++++.|.|.++++||+||+.++++|+.|..... +...  ...+|.++|+|++|+|+++|++++++++||+
T Consensus         2 ~~~~~~~-~~~~~~~~p~l~~~~v~I~v~~~~i~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~   80 (339)
T cd08232           2 VIHAAGD-LRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAVGPGVTGLAPGQR   80 (339)
T ss_pred             eeccCCc-eEEEEcCCCCCCCCEEEEEEEEEEECcccHHHHcCCCCCcccccCCeecCccceEEEEeeCCCCCcCCCCCE
Confidence            4666766 9999999999999999999999999999988763 3221  1245778999999999999999999999999


Q ss_pred             EEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCch
Q 025895           91 VIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLD  170 (246)
Q Consensus        91 V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~  170 (246)
                      |+..+...|+.|.+|..|..+.|.....   .+....+              ....|+|++|+.++.+.++++|++++++
T Consensus        81 V~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~--------------~~~~g~~~~~v~v~~~~~~~iP~~~~~~  143 (339)
T cd08232          81 VAVNPSRPCGTCDYCRAGRPNLCLNMRF---LGSAMRF--------------PHVQGGFREYLVVDASQCVPLPDGLSLR  143 (339)
T ss_pred             EEEccCCcCCCChHHhCcCcccCccccc---eeecccc--------------CCCCCceeeEEEechHHeEECcCCCCHH
Confidence            9999989999999999999999997532   1100000              0123499999999999999999999999


Q ss_pred             hhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          171 KVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       171 ~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      +++. ..++.++|+++...... ++++|||.|+|.+|++++|+|+.+|+.+++++++++++.++++++|++
T Consensus       144 ~aa~-~~~~~~a~~~l~~~~~~-~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~  212 (339)
T cd08232         144 RAAL-AEPLAVALHAVNRAGDL-AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGAD  212 (339)
T ss_pred             Hhhh-cchHHHHHHHHHhcCCC-CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCC
Confidence            8876 56788899887555555 899999988899999999999999986789999999999998999875

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=99.96  E-value=4e-28  Score=212.41  Aligned_cols=206  Identities=32%  Similarity=0.503  Sum_probs=181.2

Q ss_pred             eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCCC
Q 025895           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (246)
Q Consensus        10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd   89 (246)
                      |||+++.++++ +++.+.|.|++++++|+||+.++++|+.|.....+..+. .+|.++|+|++|+|+.+|++++++++||
T Consensus         1 ~~a~~~~~~~~-~~~~~~~~~~l~~~~v~v~v~~~~l~~~d~~~~~g~~~~-~~p~~~g~~~~G~v~~vG~~v~~~~~Gd   78 (334)
T cd08234           1 MKALVYEGPGE-LEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFGA-APPLVPGHEFAGVVVAVGSKVTGFKVGD   78 (334)
T ss_pred             CeeEEecCCCc-eEEEeccCCCCCCCeEEEEEEEEeEchhhhHHhcCCCCC-CCCcccccceEEEEEEeCCCCCCCCCCC
Confidence            68999998886 999999999999999999999999999999988876543 3678999999999999999999999999


Q ss_pred             EEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCc
Q 025895           90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL  169 (246)
Q Consensus        90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~  169 (246)
                      +|+..+...|++|.+|..+..+.|.....   .|.. .                  .|+|++|+.++.+.++++|+++++
T Consensus        79 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~------------------~g~~~~~~~v~~~~~~~lP~~~~~  136 (334)
T cd08234          79 RVAVDPNIYCGECFYCRRGRPNLCENLTA---VGVT-R------------------NGGFAEYVVVPAKQVYKIPDNLSF  136 (334)
T ss_pred             EEEEcCCcCCCCCccccCcChhhCCCcce---eccC-C------------------CCcceeEEEecHHHcEECcCCCCH
Confidence            99998888999999999998888886532   1111 1                  238999999999999999999999


Q ss_pred             hhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       170 ~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      .+++.+ ..+.++++++ ...+++++++|+|+|+|.+|.+++++|+..|+..|+++++++++.+.++++|++
T Consensus       137 ~~aa~~-~~~~~a~~~l-~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~  206 (334)
T cd08234         137 EEAALA-EPLSCAVHGL-DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGAT  206 (334)
T ss_pred             HHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCe
Confidence            988766 6778888876 778899999999998899999999999999994489999999999999888875

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=99.96  E-value=8.5e-28  Score=208.77  Aligned_cols=208  Identities=29%  Similarity=0.503  Sum_probs=176.7

Q ss_pred             eeeeEeecCC-CCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCC
Q 025895           10 CKAAVAWEPN-KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (246)
Q Consensus        10 ~ka~~~~~~~-~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~G   88 (246)
                      ||++++++++ +.++++++|.|.+.+++|+||+.++++|+.|.....+.+.....|.++|+|++|+|+++|++++.+++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~V~v~~~~l~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G   80 (306)
T cd08258           1 MKALVKTGPGPGNVELREVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDPVETPVVLGHEFSGTIVEVGPDVEGWKVG   80 (306)
T ss_pred             CeeEEEecCCCCceEEeecCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCcCCCCeeeccceEEEEEEECCCcCcCCCC
Confidence            5788888755 349999999999999999999999999999998888765433457899999999999999999999999


Q ss_pred             CEEEeeCC-CCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCC
Q 025895           89 DHVIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA  167 (246)
Q Consensus        89 d~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~  167 (246)
                      |+|+..+. ..|+.|.+|..+....|..-..   .|.. .                  .|+|++|+.++...++++|+++
T Consensus        81 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~------------------~g~~~~~~~v~~~~~~~lp~~~  138 (306)
T cd08258          81 DRVVSETTFSTCGRCPYCRRGDYNLCPHRKG---IGTQ-A------------------DGGFAEYVLVPEESLHELPENL  138 (306)
T ss_pred             CEEEEccCcCCCCCCcchhCcCcccCCCCce---eeec-C------------------CCceEEEEEcchHHeEECcCCC
Confidence            99998874 7899999999998888875321   1211 1                  2489999999999999999999


Q ss_pred             CchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE--cCChhHHHHHhhcCCC
Q 025895          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI--DIDPKKFDRGMSCVSS  241 (246)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~--~~~~~~~~~~~~lg~~  241 (246)
                      ++++++ +.....++|+++.....++++++|||.|+|.+|++++++|+.+|+ +|+++  ++++++.++++++|++
T Consensus       139 ~~~~aa-~~~~~~~a~~~l~~~~~~~~g~~vlI~g~g~~g~~~~~la~~~G~-~v~~~~~~~~~~~~~~~~~~g~~  212 (306)
T cd08258         139 SLEAAA-LTEPLAVAVHAVAERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGA-TVVVVGTEKDEVRLDVAKELGAD  212 (306)
T ss_pred             CHHHHH-hhchHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEECCCCCHHHHHHHHHhCCc
Confidence            999887 666888899988888889999999998889999999999999999 77776  3455688888888875

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=99.96  E-value=6.1e-28  Score=210.16  Aligned_cols=181  Identities=27%  Similarity=0.301  Sum_probs=160.8

Q ss_pred             eeeeEeecCCCC---eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCC-CCCCCcccccceEEEEEEcCCCCCcc
Q 025895           10 CKAAVAWEPNKP---LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCILGHEAAGIVESVGEGVTEV   85 (246)
Q Consensus        10 ~ka~~~~~~~~~---~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~-~~~~p~v~G~e~vG~V~~vG~~~~~~   85 (246)
                      |||+++.+++++   ++++++|.|.+.++||+||+.++++|+.|...+.+.++ ...+|.++|||++|+|+++|+++.++
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~   80 (324)
T cd08292           1 MRAAVHTQFGDPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGYKPELPAIGGSEAVGVVDAVGEGVKGL   80 (324)
T ss_pred             CeeEEEccCCChhHeEEEeecCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCCCCCcceEEEEEEeCCCCCCC
Confidence            689999887754   78999999999999999999999999999999887664 33568899999999999999999999


Q ss_pred             CCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCC
Q 025895           86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP  165 (246)
Q Consensus        86 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~  165 (246)
                      ++||+|+..+.                               .                  |+|++|+.++...++++|+
T Consensus        81 ~~Gd~V~~~~~-------------------------------~------------------g~~~~~~~~~~~~~~~ip~  111 (324)
T cd08292          81 QVGQRVAVAPV-------------------------------H------------------GTWAEYFVAPADGLVPLPD  111 (324)
T ss_pred             CCCCEEEeccC-------------------------------C------------------CcceeEEEEchHHeEECCC
Confidence            99999985421                               2                  2899999999999999999


Q ss_pred             CCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       166 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      ++++++++.+++...++|+++ ....++++++|||+|+ |.+|++++++|+.+|+ .++++.+++++.+.++++|++
T Consensus       112 ~~~~~~aa~~~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~  186 (324)
T cd08292         112 GISDEVAAQLIAMPLSALMLL-DFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGI-NVINLVRRDAGVAELRALGIG  186 (324)
T ss_pred             CCCHHHhhhccccHHHHHHHH-HhhCCCCCCEEEEcccccHHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHhcCCC
Confidence            999999999988889999876 5578999999999987 9999999999999999 888888888888888888875

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=99.96  E-value=1.9e-28  Score=210.38  Aligned_cols=161  Identities=26%  Similarity=0.418  Sum_probs=137.3

Q ss_pred             ccccceEEEEEEcCCCCC------ccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcc
Q 025895           66 ILGHEAAGIVESVGEGVT------EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKP  139 (246)
Q Consensus        66 v~G~e~vG~V~~vG~~~~------~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~  139 (246)
                      ++|||++|+|+++|++++      ++++||||++.+..+|+.|.+|..++.+.|.+....   |.....+          
T Consensus         1 v~GHE~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~---g~~~~~~----------   67 (280)
T TIGR03366         1 VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRKY---GHEALDS----------   67 (280)
T ss_pred             CCCcccceEEEEeCCCccccccCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCChhhc---CcccccC----------
Confidence            589999999999999998      899999999999999999999999999999975532   2110000          


Q ss_pred             eeeccCCcceeeeEEeecC-ceEEcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcC
Q 025895          140 IYHFMGTSTFSQYTVVHDV-SVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG  218 (246)
Q Consensus       140 ~~~~~~~g~~~~~~~~~~~-~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G  218 (246)
                        .....|+|+||+.+|.. .++++|+++++++++.+.+...|+|+++ +.....++++|||+|+|++|++++|+|+.+|
T Consensus        68 --~~~~~G~~aey~~v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G  144 (280)
T TIGR03366        68 --GWPLSGGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCATATVMAAL-EAAGDLKGRRVLVVGAGMLGLTAAAAAAAAG  144 (280)
T ss_pred             --CccccccceeeEEecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHH-HhccCCCCCEEEEECCCHHHHHHHHHHHHcC
Confidence              00113499999999997 7999999999999999998889999876 4455669999999999999999999999999


Q ss_pred             CCeEEEEcCChhHHHHHhhcCCCc
Q 025895          219 ASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       219 ~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      +.+|++++++++|+++++++|++.
T Consensus       145 ~~~Vi~~~~~~~r~~~a~~~Ga~~  168 (280)
T TIGR03366       145 AARVVAADPSPDRRELALSFGATA  168 (280)
T ss_pred             CCEEEEECCCHHHHHHHHHcCCcE
Confidence            955999999999999999999973

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd05281 TDH Threonine dehydrogenase

Probab=99.96  E-value=1.2e-27  Score=210.59  Aligned_cols=207  Identities=32%  Similarity=0.446  Sum_probs=174.5

Q ss_pred             eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCC---CCCCCCcccccceEEEEEEcCCCCCccC
Q 025895           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD---PEGLFPCILGHEAAGIVESVGEGVTEVQ   86 (246)
Q Consensus        10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~---~~~~~p~v~G~e~vG~V~~vG~~~~~~~   86 (246)
                      ||+++++.++..+++.+.|.|.|.+++++||+.++++|+.|...+.+..   ....+|.++|||++|+|+.+|++++.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~   80 (341)
T cd05281           1 MKAIVKTKAGPGAELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEVGEGVTRVK   80 (341)
T ss_pred             CcceEEecCCCceEEEeCCCCCCCCCeEEEEEEEEEEcccchHHHcCCCCccccCCCCcccccceEEEEEEECCCCCCCC
Confidence            6899999888779999999999999999999999999999988754421   1224567899999999999999998999


Q ss_pred             CCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCC
Q 025895           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (246)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~  166 (246)
                      +||+|+..+..+|+.|.+|..+..++|....   ..|.. .                  .|+|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~------------------~g~~~~~v~v~~~~~~~lP~~  138 (341)
T cd05281          81 VGDYVSAETHIVCGKCYQCRTGNYHVCQNTK---ILGVD-T------------------DGCFAEYVVVPEENLWKNDKD  138 (341)
T ss_pred             CCCEEEECCccCCCCChHHHCcCcccCcccc---eEecc-C------------------CCcceEEEEechHHcEECcCC
Confidence            9999999998999999999999999997531   12211 2                  348999999999999999999


Q ss_pred             CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      ++++.+ .+...+.++++++.  ...+++++|+|.|+|.+|++++++|+.+|+..|++++++++|.+.++++|++
T Consensus       139 ~~~~~a-~~~~~~~~a~~~~~--~~~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~  210 (341)
T cd05281         139 IPPEIA-SIQEPLGNAVHTVL--AGDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGAD  210 (341)
T ss_pred             CCHHHh-hhhhHHHHHHHHHH--hcCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcc
Confidence            998554 55567777877653  4457899999988899999999999999986688888999999999999986

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=99.96  E-value=6.1e-28  Score=211.44  Aligned_cols=185  Identities=22%  Similarity=0.282  Sum_probs=160.9

Q ss_pred             eeeEeecC---CCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCcc
Q 025895           11 KAAVAWEP---NKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEV   85 (246)
Q Consensus        11 ka~~~~~~---~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~   85 (246)
                      ||+++.++   +++  ++++|+|.|+++++||+||++++++|+.|..++.+..+...+|.++|+|++|+|+++|++++.|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~   80 (336)
T TIGR02817         1 KAVGYKKPLPITDPDALVDIDLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAPEAGQPKILGWDAAGVVVAVGDEVTLF   80 (336)
T ss_pred             CceeeccccCCCCcccceecccCCCCCCCCEEEEEEEEEEcChHHHHHHcCCCCCCCCCcccceeeEEEEEEeCCCCCCC
Confidence            56777775   443  8888999999999999999999999999998887765444568899999999999999999999


Q ss_pred             CCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCC
Q 025895           86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP  165 (246)
Q Consensus        86 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~  165 (246)
                      ++||+|+....                           .. .+                  |+|++|+.++.+.++++|+
T Consensus        81 ~~Gd~V~~~~~---------------------------~~-~~------------------g~~~~~~~v~~~~~~~ip~  114 (336)
T TIGR02817        81 KPGDEVWYAGD---------------------------ID-RP------------------GSNAEFHLVDERIVGHKPK  114 (336)
T ss_pred             CCCCEEEEcCC---------------------------CC-CC------------------CcccceEEEcHHHcccCCC
Confidence            99999974320                           00 12                  3899999999999999999


Q ss_pred             CCCchhhhhccccchhhhhhhhhhCCCCC-----CCEEEEECC-CHHHHHHHHHHHHc-CCCeEEEEcCChhHHHHHhhc
Q 025895          166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEP-----GSIVAVFGL-GTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRGMSC  238 (246)
Q Consensus       166 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~-----~~~VlI~Ga-g~~G~~ai~~a~~~-G~~~vi~~~~~~~~~~~~~~l  238 (246)
                      ++++++++.++++..|||+++....++.+     +++|||+|+ |.+|++++|+|+.+ |+ +|+++.+++++.+.++++
T Consensus       115 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~ga~g~vg~~~~~~ak~~~G~-~vi~~~~~~~~~~~l~~~  193 (336)
T TIGR02817       115 SLSFAEAAALPLTSITAWELLFDRLGINDPVAGDKRALLIIGGAGGVGSILIQLARQLTGL-TVIATASRPESQEWVLEL  193 (336)
T ss_pred             CCCHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCC-EEEEEcCcHHHHHHHHHc
Confidence            99999999999999999998877777776     999999987 99999999999998 99 899999999999999999


Q ss_pred             CCCc
Q 025895          239 VSSS  242 (246)
Q Consensus       239 g~~~  242 (246)
                      |++.
T Consensus       194 g~~~  197 (336)
T TIGR02817       194 GAHH  197 (336)
T ss_pred             CCCE
Confidence            9863

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.96  E-value=2.3e-27  Score=208.93  Aligned_cols=199  Identities=27%  Similarity=0.278  Sum_probs=165.4

Q ss_pred             eeeeEeecCCCC--eEEEE-eecCCCCCCeEEEEEeeeecchhhhhhhcCCCC--------------------CCCCCcc
Q 025895           10 CKAAVAWEPNKP--LVIED-VQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP--------------------EGLFPCI   66 (246)
Q Consensus        10 ~ka~~~~~~~~~--~~~~e-~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~--------------------~~~~p~v   66 (246)
                      ||++++...+.+  +.+.+ .+.|.+.+++|+||+.++++|++|..++.+.+.                    ...+|.+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~   80 (350)
T cd08274           1 MRAVLLTGHGGLDKLVYRDDVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPRI   80 (350)
T ss_pred             CeEEEEeccCCccceeecccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCccccccccccccccccccCCCCCCcc
Confidence            688888876643  55654 577788999999999999999999998876542                    2356889


Q ss_pred             cccceEEEEEEcCCCCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCC
Q 025895           67 LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGT  146 (246)
Q Consensus        67 ~G~e~vG~V~~vG~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~  146 (246)
                      +|||++|+|+++|+++.+|++||+|+..+..+|++|..|.     .|..      .|.. .+                  
T Consensus        81 ~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~-----~~~~------~~~~-~~------------------  130 (350)
T cd08274          81 QGADIVGRVVAVGEGVDTARIGERVLVDPSIRDPPEDDPA-----DIDY------IGSE-RD------------------  130 (350)
T ss_pred             cCCcceEEEEEeCCCCCCCCCCCEEEEecCcCCCCccccc-----cccc------cCCC-CC------------------
Confidence            9999999999999999999999999998888888776542     1211      1110 12                  


Q ss_pred             cceeeeEEeecCceEEcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEE
Q 025895          147 STFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI  225 (246)
Q Consensus       147 g~~~~~~~~~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~  225 (246)
                      |+|++|+.++...++++|+++++.+++.+.+++.++|+++ ....++++++|||+|+ |.+|++++++|+.+|+ +++++
T Consensus       131 g~~~~~~~v~~~~~~~ip~~~~~~~~a~l~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-~vi~~  208 (350)
T cd08274         131 GGFAEYTVVPAENAYPVNSPLSDVELATFPCSYSTAENML-ERAGVGAGETVLVTGASGGVGSALVQLAKRRGA-IVIAV  208 (350)
T ss_pred             ccceEEEEecHHHceeCCCCCCHHHHHhcccHHHHHHHHH-hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCC-EEEEE
Confidence            3899999999999999999999999999999999999976 7788999999999998 9999999999999999 78888


Q ss_pred             cCChhHHHHHhhcCCC
Q 025895          226 DIDPKKFDRGMSCVSS  241 (246)
Q Consensus       226 ~~~~~~~~~~~~lg~~  241 (246)
                      +.++ +++.++++|++
T Consensus       209 ~~~~-~~~~~~~~g~~  223 (350)
T cd08274         209 AGAA-KEEAVRALGAD  223 (350)
T ss_pred             eCch-hhHHHHhcCCe
Confidence            7665 88888999985

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08293 PTGR2 Prostaglandin reductase

Probab=99.96  E-value=3e-27  Score=208.02  Aligned_cols=170  Identities=19%  Similarity=0.218  Sum_probs=142.2

Q ss_pred             eEEEEeecCCCC-CCeEEEEEeeeecchhhhhhhcCC---CCCCCCCcccccceEEEEEEcCCCCCccCCCCEEEeeCCC
Q 025895           22 LVIEDVQVAPPQ-AGEVRIKILFTALCHTDAYTWSGK---DPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQA   97 (246)
Q Consensus        22 ~~~~e~~~p~~~-~~eVlVkv~~~~i~~~D~~~~~~~---~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd~V~~~~~~   97 (246)
                      ++++|+|.|+|. +|||||||.+++||+.|...+...   ....++|.++|||++|+|+++|+++++|++||+|+...  
T Consensus        23 ~~~~~~~~p~~~~~~evlV~v~a~gin~~d~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~--  100 (345)
T cd08293          23 FRVEECTLPDELNEGQVLVRTLYLSVDPYMRCRMNEDTGTDYLAPWQLSQVLDGGGVGVVEESKHQKFAVGDIVTSFN--  100 (345)
T ss_pred             eEEEeccCCCCCCCCeEEEEEEEEecCHHHHhhcccccccccCCCccCCCceEeeEEEEEeccCCCCCCCCCEEEecC--
Confidence            889999999874 999999999999999986433211   11224678999999999999999999999999997421  


Q ss_pred             CCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCchh----hh
Q 025895           98 ECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDK----VC  173 (246)
Q Consensus        98 ~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~----aa  173 (246)
                                                                       ++|++|++++.+.++++|+++++.+    ++
T Consensus       101 -------------------------------------------------~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a  131 (345)
T cd08293         101 -------------------------------------------------WPWQTYAVLDGSSLEKVDPQLVDGHLSYFLG  131 (345)
T ss_pred             -------------------------------------------------CCceeEEEecHHHeEEcCccccccchhHHhh
Confidence                                                             1699999999999999999864432    34


Q ss_pred             hccccchhhhhhhhhhCCCCCC--CEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh-cCCCc
Q 025895          174 LLGCGVPTGLGAVWNTAKVEPG--SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS-CVSSS  242 (246)
Q Consensus       174 ~l~~~~~ta~~~l~~~~~~~~~--~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~-lg~~~  242 (246)
                      .+++++.|||+++.+..+++++  ++|||+|+ |++|++++|+|+++|+.+|++++++++|.+.+++ +|++.
T Consensus       132 ~~~~~~~ta~~al~~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~  204 (345)
T cd08293         132 AVGLPGLTALIGIQEKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDA  204 (345)
T ss_pred             hcCcHHHHHHHHHHHhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcE
Confidence            5667889999988777778876  99999998 9999999999999998679999999999998876 99873

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=99.95  E-value=2.1e-27  Score=208.54  Aligned_cols=184  Identities=28%  Similarity=0.354  Sum_probs=161.7

Q ss_pred             eeeeEeecCCCC---eEEEEeecCCCCC-CeEEEEEeeeecchhhhhhhcCCCCCC-C----CCcccccceEEEEEEcCC
Q 025895           10 CKAAVAWEPNKP---LVIEDVQVAPPQA-GEVRIKILFTALCHTDAYTWSGKDPEG-L----FPCILGHEAAGIVESVGE   80 (246)
Q Consensus        10 ~ka~~~~~~~~~---~~~~e~~~p~~~~-~eVlVkv~~~~i~~~D~~~~~~~~~~~-~----~p~v~G~e~vG~V~~vG~   80 (246)
                      |||+++..++.+   +.+++.|.|.|.+ ++|+||+.++++|+.|...+.+..+.. .    .|.++|||++|+|+++|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~v~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~g~e~~G~V~~vG~   80 (341)
T cd08290           1 AKALVYTEHGEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEVVKVGS   80 (341)
T ss_pred             CceEEEccCCCchhheEEeecCCCCCCCCCEEEEEEEecCCCHHHHHHhcCcCCCCCcccCCCCCCCCcceEEEEEEeCC
Confidence            799999998876   8999999999988 999999999999999999887765422 2    577999999999999999


Q ss_pred             CCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCce
Q 025895           81 GVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSV  160 (246)
Q Consensus        81 ~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  160 (246)
                      ++..+++||+|+....                              ..                  |+|++|+.++.+.+
T Consensus        81 ~v~~~~~Gd~V~~~~~------------------------------~~------------------g~~~~~~~v~~~~~  112 (341)
T cd08290          81 GVKSLKPGDWVIPLRP------------------------------GL------------------GTWRTHAVVPADDL  112 (341)
T ss_pred             CCCCCCCCCEEEecCC------------------------------CC------------------ccchheEeccHHHe
Confidence            9999999999985431                              11                  38999999999999


Q ss_pred             EEcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCh----hHHHHH
Q 025895          161 AKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP----KKFDRG  235 (246)
Q Consensus       161 ~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~----~~~~~~  235 (246)
                      +++|+++++++++.+++.+.|+|+++.....++++++|||+|+ |.+|++++++|++.|+ +++++.+++    ++.+.+
T Consensus       113 ~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~  191 (341)
T cd08290         113 IKVPNDVDPEQAATLSVNPCTAYRLLEDFVKLQPGDWVIQNGANSAVGQAVIQLAKLLGI-KTINVVRDRPDLEELKERL  191 (341)
T ss_pred             EeCCCCCCHHHHHHhhccHHHHHHHHHhhcccCCCCEEEEccchhHHHHHHHHHHHHcCC-eEEEEEcCCCcchhHHHHH
Confidence            9999999999999999999999998877778999999999987 9999999999999999 777777665    678888


Q ss_pred             hhcCCCc
Q 025895          236 MSCVSSS  242 (246)
Q Consensus       236 ~~lg~~~  242 (246)
                      +++|++.
T Consensus       192 ~~~g~~~  198 (341)
T cd08290         192 KALGADH  198 (341)
T ss_pred             HhcCCCE
Confidence            8899873

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=99.95  E-value=5.2e-27  Score=204.94  Aligned_cols=184  Identities=25%  Similarity=0.273  Sum_probs=164.2

Q ss_pred             ceeeeEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccC
Q 025895            9 TCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQ   86 (246)
Q Consensus         9 ~~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~   86 (246)
                      +||++++++++.+  ++++++|.|.++++||+||+.++++|+.|+....+.++....|.++|||++|+|+.+|+++..++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~   80 (327)
T PRK10754          1 MAKRIEFHKHGGPEVLQAVEFTPADPAENEVQVENKAIGINYIDTYIRSGLYPPPSLPSGLGTEAAGVVSKVGSGVKHIK   80 (327)
T ss_pred             CceEEEEeccCChhHeEEeeccCCCCCCCEEEEEEEEEEcCHHHhhhcCCCCCCCCCCCccCcceEEEEEEeCCCCCCCC
Confidence            6899999987765  88999999999999999999999999999998887765555678899999999999999999999


Q ss_pred             CCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCC
Q 025895           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (246)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~  166 (246)
                      +||+|+....                              ..                  |+|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~------------------------------~~------------------g~~~~~v~v~~~~~~~lp~~  112 (327)
T PRK10754         81 VGDRVVYAQS------------------------------AL------------------GAYSSVHNVPADKAAILPDA  112 (327)
T ss_pred             CCCEEEECCC------------------------------CC------------------cceeeEEEcCHHHceeCCCC
Confidence            9999974311                              11                  38999999999999999999


Q ss_pred             CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      +++++++.+++...++|.++.....+.++++|+|+|+ |.+|++++++++.+|+ +++++++++++++.++++|++
T Consensus       113 ~~~~~~~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~-~v~~~~~~~~~~~~~~~~g~~  187 (327)
T PRK10754        113 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGSAQKAQRAKKAGAW  187 (327)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHCCCC
Confidence            9999999888888999988777788999999999976 9999999999999999 899999999999999999975

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=99.95  E-value=9.2e-27  Score=204.75  Aligned_cols=181  Identities=25%  Similarity=0.302  Sum_probs=151.8

Q ss_pred             ceeeeEeecCCC-CeEEEEeec----CCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccce--EEEEEEcCC
Q 025895            9 TCKAAVAWEPNK-PLVIEDVQV----APPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEA--AGIVESVGE   80 (246)
Q Consensus         9 ~~ka~~~~~~~~-~~~~~e~~~----p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~--vG~V~~vG~   80 (246)
                      -+|++....+.. .|++++.|.    |+|++|||||||++++||+.|++.+.+.+.. ..+|.++|++.  .|.+..+|+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~vlv~v~~~~inp~d~~~~~g~~~~~~~~p~~~g~~~~g~~~~~~v~~   86 (338)
T cd08295           7 ILKAYVTGFPKESDLELRTTKLTLKVPPGGSGDVLVKNLYLSCDPYMRGRMKGHDDSLYLPPFKPGEVITGYGVAKVVDS   86 (338)
T ss_pred             EEecCCCCCCCccceEEEEecCCcCCCCCCCCeEEEEEEEEeeCHHHHHhhccCCccccCCCcCCCCeEeccEEEEEEec
Confidence            356666544333 399999988    8899999999999999999999988775432 24678888754  455556788


Q ss_pred             CCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeec-Cc
Q 025895           81 GVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD-VS  159 (246)
Q Consensus        81 ~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~  159 (246)
                      +++.|++||+|+..                                                    |+|+||+++|. ..
T Consensus        87 ~v~~~~vGd~V~~~----------------------------------------------------g~~aey~~v~~~~~  114 (338)
T cd08295          87 GNPDFKVGDLVWGF----------------------------------------------------TGWEEYSLIPRGQD  114 (338)
T ss_pred             CCCCCCCCCEEEec----------------------------------------------------CCceeEEEecchhc
Confidence            88889999999621                                                    27999999999 79


Q ss_pred             eEEcC-CCCCch-hhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895          160 VAKID-PQAPLD-KVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       160 ~~~ip-~~~~~~-~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~  236 (246)
                      ++++| +++++. +++.+++++.|||+++.+..++++|++|||+|+ |++|++++|+|+.+|+ +|++++++++|.+.++
T Consensus       115 ~~~lp~~~~~~~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~  193 (338)
T cd08295         115 LRKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLK  193 (338)
T ss_pred             eeecCCCCCCHHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence            99995 678876 788899999999998878889999999999998 9999999999999999 8999999999999999


Q ss_pred             h-cCCCc
Q 025895          237 S-CVSSS  242 (246)
Q Consensus       237 ~-lg~~~  242 (246)
                      + +|++.
T Consensus       194 ~~lGa~~  200 (338)
T cd08295         194 NKLGFDD  200 (338)
T ss_pred             HhcCCce
Confidence            8 99873

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=99.95  E-value=1.9e-26  Score=201.29  Aligned_cols=174  Identities=22%  Similarity=0.204  Sum_probs=148.0

Q ss_pred             ceeeeEeecC--CCC----eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCC
Q 025895            9 TCKAAVAWEP--NKP----LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGV   82 (246)
Q Consensus         9 ~~ka~~~~~~--~~~----~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~   82 (246)
                      +||+|++.++  +++    ++++|.|.|+|++|||+|||++++||+.|......   ...+|.++|+|++|+|++   .+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~evlVkv~a~~in~~~~~~~~~---~~~~p~v~G~e~~G~V~~---~~   75 (329)
T cd08294           2 KAKTWVLKKHFDGKPKESDFELVEEELPPLKDGEVLCEALFLSVDPYMRPYSKR---LNEGDTMIGTQVAKVIES---KN   75 (329)
T ss_pred             CceEEEEecCCCCCCCccceEEEecCCCCCCCCcEEEEEEEEecCHHHhccccc---CCCCCcEecceEEEEEec---CC
Confidence            6899999983  343    89999999999999999999999999887552221   124688999999999995   34


Q ss_pred             CccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecC---c
Q 025895           83 TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV---S  159 (246)
Q Consensus        83 ~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~  159 (246)
                      +.|++||+|+..                                                    ++|++|..++.+   .
T Consensus        76 ~~~~~Gd~V~~~----------------------------------------------------~~~~~~~~~~~~~~~~  103 (329)
T cd08294          76 SKFPVGTIVVAS----------------------------------------------------FGWRTHTVSDGKDQPD  103 (329)
T ss_pred             CCCCCCCEEEee----------------------------------------------------CCeeeEEEECCccccc
Confidence            579999999732                                                    168899999999   9


Q ss_pred             eEEcCCCCCc-----hhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 025895          160 VAKIDPQAPL-----DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (246)
Q Consensus       160 ~~~ip~~~~~-----~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~  233 (246)
                      ++++|+++++     ..++.+++++.|||+++.+..+++++++|||+|+ |++|++++|+|+.+|+ +|+++++++++.+
T Consensus       104 ~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~  182 (329)
T cd08294         104 LYKLPADLPDDLPPSLALGVLGMPGLTAYFGLLEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVA  182 (329)
T ss_pred             eEECCccccccCChHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHH
Confidence            9999999882     2234677899999998878888999999999986 9999999999999999 8999999999999


Q ss_pred             HHhhcCCC
Q 025895          234 RGMSCVSS  241 (246)
Q Consensus       234 ~~~~lg~~  241 (246)
                      .++++|++
T Consensus       183 ~l~~~Ga~  190 (329)
T cd08294         183 WLKELGFD  190 (329)
T ss_pred             HHHHcCCC
Confidence            99999987

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=99.95  E-value=2e-26  Score=202.75  Aligned_cols=201  Identities=28%  Similarity=0.402  Sum_probs=170.5

Q ss_pred             ecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCC---CCCCCcccccceEEEEEEcCCCCCccCCCCEEE
Q 025895           16 WEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI   92 (246)
Q Consensus        16 ~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~---~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd~V~   92 (246)
                      .+++.++++++.|.|.|+++||+||+.++++|+.|...+.+...   ...+|.++|+|++|+|+++|++++++++||+|+
T Consensus         5 ~~~~~~~~l~~~~~p~~~~~ev~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~   84 (340)
T TIGR00692         5 TKPGYGAELTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGIKVGDYVS   84 (340)
T ss_pred             ccCCCCcEEEECCCCCCCCCeEEEEEEEEEEcccCHHHHcCCCCCCCCCCCCcccccceEEEEEEECCCCCcCCCCCEEE
Confidence            46777799999999999999999999999999999887654321   123567899999999999999999999999999


Q ss_pred             eeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCchhh
Q 025895           93 PCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKV  172 (246)
Q Consensus        93 ~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~a  172 (246)
                      ..+...|+.|..|..+..+.|...+.   .|.. .                  .|+|++|+.++.+.++++|++++++.+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~------------------~g~~~~~~~~~~~~~~~lp~~~~~~~a  142 (340)
T TIGR00692        85 VETHIVCGKCYACRRGQYHVCQNTKI---FGVD-T------------------DGCFAEYAVVPAQNIWKNPKSIPPEYA  142 (340)
T ss_pred             ECCcCCCCCChhhhCcChhhCcCcce---Eeec-C------------------CCcceeEEEeehHHcEECcCCCChHhh
Confidence            99999999999999999999998543   2221 2                  248999999999999999999998655


Q ss_pred             hhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          173 CLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       173 a~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                       .++..+.++++++  ....+++++|+|.|+|.+|++++++|+.+|++.|++++++++|.+.++++|++
T Consensus       143 -~~~~~~~~a~~~~--~~~~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~  208 (340)
T TIGR00692       143 -TIQEPLGNAVHTV--LAGPISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGAT  208 (340)
T ss_pred             -hhcchHHHHHHHH--HccCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCc
Confidence             4666788888765  34567899999988899999999999999994488888899999999999986

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=99.95  E-value=2.7e-26  Score=202.89  Aligned_cols=184  Identities=20%  Similarity=0.248  Sum_probs=151.3

Q ss_pred             CcccceeeeEeecCCCC------eEEEEe---ecCC-CCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCccccc--ceE
Q 025895            5 GQVITCKAAVAWEPNKP------LVIEDV---QVAP-PQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGH--EAA   72 (246)
Q Consensus         5 ~~~~~~ka~~~~~~~~~------~~~~e~---~~p~-~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~--e~v   72 (246)
                      .+..+.|++++.+..+.      |++++.   +.|. +++||||||+.++++|+.|...+.+......+|.++|+  |++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~gevlVkv~a~~inp~~~~~~~~~~~~~~~p~~~G~~~~~~   83 (348)
T PLN03154          4 GQVVENKQVILKNYIDGIPKETDMEVKLGNKIELKAPKGSGAFLVKNLYLSCDPYMRGRMRDFHDSYLPPFVPGQRIEGF   83 (348)
T ss_pred             CccccceEEEEecCCCCCCCcccEEEEeecccCCCCCCCCCeEEEEEEEEccCHHHHHhhhccCCCCCCCcCCCCeeEee
Confidence            45566788888643211      888774   6653 48999999999999999987654332222245889998  889


Q ss_pred             EEEEEcCCCCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeee
Q 025895           73 GIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQY  152 (246)
Q Consensus        73 G~V~~vG~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~  152 (246)
                      |+|..+|++++.|++||+|...                                                    ++|+||
T Consensus        84 G~v~~vg~~v~~~~~Gd~V~~~----------------------------------------------------~~~aey  111 (348)
T PLN03154         84 GVSKVVDSDDPNFKPGDLISGI----------------------------------------------------TGWEEY  111 (348)
T ss_pred             EEEEEEecCCCCCCCCCEEEec----------------------------------------------------CCcEEE
Confidence            9999999999999999999632                                                    179999


Q ss_pred             EEeecCc--eE--EcCCCCCch-hhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEc
Q 025895          153 TVVHDVS--VA--KIDPQAPLD-KVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID  226 (246)
Q Consensus       153 ~~~~~~~--~~--~ip~~~~~~-~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~  226 (246)
                      ..++...  ++  ++|++++++ +++.++++..|||+++.+...++++++|||+|+ |++|++++|+|+.+|+ +|++++
T Consensus       112 ~~v~~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA~~al~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~  190 (348)
T PLN03154        112 SLIRSSDNQLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSA  190 (348)
T ss_pred             EEEeccccceEEccCcCCCCHHHHHHHcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEc
Confidence            9998753  54  459999986 688899999999998878888999999999998 9999999999999999 899999


Q ss_pred             CChhHHHHHh-hcCCC
Q 025895          227 IDPKKFDRGM-SCVSS  241 (246)
Q Consensus       227 ~~~~~~~~~~-~lg~~  241 (246)
                      ++++|.+.++ ++|++
T Consensus       191 ~~~~k~~~~~~~lGa~  206 (348)
T PLN03154        191 GSSQKVDLLKNKLGFD  206 (348)
T ss_pred             CCHHHHHHHHHhcCCC
Confidence            9999999987 79997

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=99.95  E-value=2.6e-26  Score=200.76  Aligned_cols=161  Identities=20%  Similarity=0.235  Sum_probs=141.3

Q ss_pred             eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCCCEEEeeCCCCCCC
Q 025895           22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRE  101 (246)
Q Consensus        22 ~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd~V~~~~~~~~~~  101 (246)
                      ++++|.|.|+|++|||+|||.++++|+.|..   +.+.....|.++|.|++|+|+++|+   .|++||+|+..       
T Consensus        19 l~~~~~~~p~~~~~evlv~v~a~~~n~~~~~---g~~~~~~~~~i~G~~~~g~v~~~~~---~~~~GdrV~~~-------   85 (325)
T TIGR02825        19 FELKTVELPPLNNGEVLLEALFLSVDPYMRV---AAKRLKEGDTMMGQQVARVVESKNV---ALPKGTIVLAS-------   85 (325)
T ss_pred             eEEEeccCCCCCCCcEEEEEEEEecCHHHhc---ccCcCCCCCcEecceEEEEEEeCCC---CCCCCCEEEEe-------
Confidence            8899999999999999999999999997643   3333234578999999999999874   59999999742       


Q ss_pred             ChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEc----CCCCCchhh-hhcc
Q 025895          102 CKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI----DPQAPLDKV-CLLG  176 (246)
Q Consensus       102 c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i----p~~~~~~~a-a~l~  176 (246)
                                                                   ++|++|+.++.+.+.++    |++++++++ +.++
T Consensus        86 ---------------------------------------------~~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~  120 (325)
T TIGR02825        86 ---------------------------------------------PGWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVG  120 (325)
T ss_pred             ---------------------------------------------cCceeeEEechhheEEccccccCCCCHHHHHHhcc
Confidence                                                         15889999998888777    899999987 6788


Q ss_pred             ccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          177 CGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       177 ~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      +++.|||+++.+..+++++++|||+|+ |++|++++|+|+.+|+ +|++++++++|.+.++++|++
T Consensus       121 ~~~~TA~~~l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~lGa~  185 (325)
T TIGR02825       121 MPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKKLGFD  185 (325)
T ss_pred             cHHHHHHHHHHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCC
Confidence            899999998888899999999999996 9999999999999999 899999999999999999997

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=99.95  E-value=4.3e-26  Score=198.45  Aligned_cols=187  Identities=24%  Similarity=0.245  Sum_probs=158.3

Q ss_pred             eeeeEeecCCC--CeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCCccC
Q 025895           10 CKAAVAWEPNK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ   86 (246)
Q Consensus        10 ~ka~~~~~~~~--~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~~~~   86 (246)
                      |||++++++++  +++++|+|.|.+++++|+||+.++++|++|...+.+..+. ..+|.++|||++|+|+++  +++.++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~--~~~~~~   78 (325)
T cd05280           1 FKALVVEEQDGGVSLFLRTLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGGVTRNYPHTPGIDAAGTVVSS--DDPRFR   78 (325)
T ss_pred             CceEEEcccCCCCcceEEeCCCCCCCCCeEEEEEEEeecChHHHHHhcCCCCCCCCCCCccCcccEEEEEEe--CCCCCC
Confidence            79999999886  5999999999999999999999999999999988876542 245789999999999998  456799


Q ss_pred             CCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCC
Q 025895           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (246)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~  166 (246)
                      +||+|+..+.                        ..|.. .+                  |+|++|+.++.+.++++|++
T Consensus        79 ~Gd~V~~~~~------------------------~~g~~-~~------------------g~~~~~~~v~~~~~~~lp~~  115 (325)
T cd05280          79 EGDEVLVTGY------------------------DLGMN-TD------------------GGFAEYVRVPADWVVPLPEG  115 (325)
T ss_pred             CCCEEEEccc------------------------ccCCC-CC------------------ceeEEEEEEchhhEEECCCC
Confidence            9999986431                        01111 12                  38999999999999999999


Q ss_pred             CCchhhhhccccchhhhhhhhhhCC--CC-CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          167 APLDKVCLLGCGVPTGLGAVWNTAK--VE-PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~l~~~~~--~~-~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      +++++++.+++.+.++|.++.....  +. .+++|+|+|+ |.+|++++++|+.+|+ +|+++++++++++.++++|++.
T Consensus       116 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~  194 (325)
T cd05280         116 LSLREAMILGTAGFTAALSVHRLEDNGQTPEDGPVLVTGATGGVGSIAVAILAKLGY-TVVALTGKEEQADYLKSLGASE  194 (325)
T ss_pred             CCHHHHHhhHHHHHHHHHHHHHHhhccCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcE
Confidence            9999999999999999987654433  34 3579999998 9999999999999999 7999999999999999999863

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.94  E-value=1.5e-25  Score=195.63  Aligned_cols=204  Identities=26%  Similarity=0.333  Sum_probs=169.2

Q ss_pred             eeeeEeecCC--CCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCCccC
Q 025895           10 CKAAVAWEPN--KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ   86 (246)
Q Consensus        10 ~ka~~~~~~~--~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~~~~   86 (246)
                      |||++++..+  +.+++++.+.|.+++++++||+.++++|+.|+....+..+. ...|.++|||++|+|+++|+.+.+++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (336)
T cd08276           1 MKAWRLSGGGGLDNLKLVEEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPPPVKDPLIPLSDGAGEVVAVGEGVTRFK   80 (336)
T ss_pred             CeEEEEeccCCCcceEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhcCCCCCCCCCCcccccceeEEEEEeCCCCcCCC
Confidence            7899999664  33888899888899999999999999999999988776542 24678999999999999999999999


Q ss_pred             CCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCC
Q 025895           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (246)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~  166 (246)
                      +||+|.......|+.+.+|      .|....   ..|.                   ...|+|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~------~~~~~~---~~~~-------------------~~~g~~~~~~~~~~~~~~~lp~~  132 (336)
T cd08276          81 VGDRVVPTFFPNWLDGPPT------AEDEAS---ALGG-------------------PIDGVLAEYVVLPEEGLVRAPDH  132 (336)
T ss_pred             CCCEEEEeccccccccccc------cccccc---cccc-------------------ccCceeeeEEEecHHHeEECCCC
Confidence            9999998776555443332      121110   0111                   11348999999999999999999


Q ss_pred             CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      +++.+++.+.+.+.++|+++.....++++++|+|+|+|.+|++++++++++|+ +|++++.++++++.++++|++.
T Consensus       133 ~~~~~a~~~~~~~~~a~~~l~~~~~~~~g~~vli~g~g~~g~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~  207 (336)
T cd08276         133 LSFEEAATLPCAGLTAWNALFGLGPLKPGDTVLVQGTGGVSLFALQFAKAAGA-RVIATSSSDEKLERAKALGADH  207 (336)
T ss_pred             CCHHHhhhhhHHHHHHHHHHHhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCE
Confidence            99999999999999999988777889999999999889999999999999999 8999999999999998888763

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=99.94  E-value=5.5e-26  Score=200.12  Aligned_cols=184  Identities=24%  Similarity=0.258  Sum_probs=157.8

Q ss_pred             eeeeEeecCCCC---eEEEEeecCCC-CCCeEEEEEeeeecchhhhhhhcCCCC---------------CCCCCcccccc
Q 025895           10 CKAAVAWEPNKP---LVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDP---------------EGLFPCILGHE   70 (246)
Q Consensus        10 ~ka~~~~~~~~~---~~~~e~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~~~~~---------------~~~~p~v~G~e   70 (246)
                      |||+++++++++   ++++|.+.|.| +++||+||++++++|++|...+.+...               ...+|.++|||
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~G~e   80 (350)
T cd08248           1 MKAWQIHSYGGIDSLLLLENARIPVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGRD   80 (350)
T ss_pred             CceEEecccCCCcceeeecccCCCCCCCCCeEEEEEEEEecCchhHHHHcCCccchhhhhhccccccccCCCCCeeecce
Confidence            789999988876   89999999999 499999999999999999998876421               23568899999


Q ss_pred             eEEEEEEcCCCCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCccee
Q 025895           71 AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFS  150 (246)
Q Consensus        71 ~vG~V~~vG~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~  150 (246)
                      ++|+|+++|+++.++++||+|+..+..                                              +..|+|+
T Consensus        81 ~~G~v~~vG~~v~~~~~Gd~V~~~~~~----------------------------------------------~~~g~~~  114 (350)
T cd08248          81 CSGVVVDIGSGVKSFEIGDEVWGAVPP----------------------------------------------WSQGTHA  114 (350)
T ss_pred             eEEEEEecCCCcccCCCCCEEEEecCC----------------------------------------------CCCccce
Confidence            999999999999999999999865320                                              0123899


Q ss_pred             eeEEeecCceEEcCCCCCchhhhhccccchhhhhhhhhhCCCC----CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEE
Q 025895          151 QYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVE----PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI  225 (246)
Q Consensus       151 ~~~~~~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~----~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~  225 (246)
                      +|+.++.+.++++|+++++++++.+++.+.++|.++.....+.    ++++|+|+|+ |.+|++++++|+.+|+ +|+++
T Consensus       115 ~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~-~v~~~  193 (350)
T cd08248         115 EYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKNAAGKRVLILGGSGGVGTFAIQLLKAWGA-HVTTT  193 (350)
T ss_pred             eEEEecHHHeecCCCCCCHHHHhhchhHHHHHHHHHHHhccCCCccCCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEE
Confidence            9999999999999999999999999999999999876666665    4999999996 9999999999999999 78887


Q ss_pred             cCChhHHHHHhhcCCC
Q 025895          226 DIDPKKFDRGMSCVSS  241 (246)
Q Consensus       226 ~~~~~~~~~~~~lg~~  241 (246)
                      .++ ++.+.++++|++
T Consensus       194 ~~~-~~~~~~~~~g~~  208 (350)
T cd08248         194 CST-DAIPLVKSLGAD  208 (350)
T ss_pred             eCc-chHHHHHHhCCc
Confidence            654 678888888875

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=99.94  E-value=1e-25  Score=196.68  Aligned_cols=183  Identities=24%  Similarity=0.263  Sum_probs=161.1

Q ss_pred             ceeeeEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCCcc
Q 025895            9 TCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEV   85 (246)
Q Consensus         9 ~~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~~~   85 (246)
                      ||||+++.+.+.+  +++++.+.|.+.+++|+||+.++++|+.|.....+..+. ...|.++|||++|+|+++|+++..+
T Consensus         1 ~m~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~   80 (334)
T PTZ00354          1 MMRAVTLKGFGGVDVLKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPPPPGSSEILGLEVAGYVEDVGSDVKRF   80 (334)
T ss_pred             CcEEEEEEecCCCcceEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEeCCCCCCC
Confidence            7999999988763  777888888899999999999999999999888775532 2446789999999999999999999


Q ss_pred             CCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCC
Q 025895           86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP  165 (246)
Q Consensus        86 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~  165 (246)
                      ++||+|+...                               .+                  |+|++|++++.+.++++|+
T Consensus        81 ~~Gd~V~~~~-------------------------------~~------------------g~~~~~~~v~~~~~~~ip~  111 (334)
T PTZ00354         81 KEGDRVMALL-------------------------------PG------------------GGYAEYAVAHKGHVMHIPQ  111 (334)
T ss_pred             CCCCEEEEec-------------------------------CC------------------CceeeEEEecHHHcEeCCC
Confidence            9999997432                               11                  3899999999999999999


Q ss_pred             CCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       166 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      ++++.+++.+.+++.++|+++.....+.++++|+|+|+ |.+|++++++|+.+|+ .++++.+++++.+.++++|++
T Consensus       112 ~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~  187 (334)
T PTZ00354        112 GYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLAEKYGA-ATIITTSSEEKVDFCKKLAAI  187 (334)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCc
Confidence            99999999999999999998877788999999999997 9999999999999999 777788999999999989886

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=99.94  E-value=1.4e-25  Score=196.02  Aligned_cols=180  Identities=27%  Similarity=0.256  Sum_probs=159.3

Q ss_pred             ceeeeEeecCCC----CeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCC
Q 025895            9 TCKAAVAWEPNK----PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVT   83 (246)
Q Consensus         9 ~~ka~~~~~~~~----~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~   83 (246)
                      .|||+++++++.    ++++++++.|.+.++||+||+.++++|+.|+....+.+.. ..+|.++|||++|+|+++|++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~p~~~g~e~~G~v~~vG~~v~   80 (329)
T cd08250           1 SFRKLVVHRLSPNFREATSIVDVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVGEGVT   80 (329)
T ss_pred             CceEEEeccCCCCcccCceEEecCCCCCCCCEEEEEEEEEecCHHHHHHHhCCCCCCCCCCcccCceeEEEEEEECCCCC
Confidence            489999997665    5899999999999999999999999999999988776542 45788999999999999999999


Q ss_pred             ccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEc
Q 025895           84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI  163 (246)
Q Consensus        84 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i  163 (246)
                      .+++||+|+...                                .                  |+|++|+.++.+.++++
T Consensus        81 ~~~~Gd~V~~~~--------------------------------~------------------g~~~s~~~v~~~~~~~i  110 (329)
T cd08250          81 DFKVGDAVATMS--------------------------------F------------------GAFAEYQVVPARHAVPV  110 (329)
T ss_pred             CCCCCCEEEEec--------------------------------C------------------cceeEEEEechHHeEEC
Confidence            999999998542                                1                  28999999999999999


Q ss_pred             CCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       164 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      |++.  .+++.+++++.++|+++.+...+.++++|+|+|+ |.+|++++++++..|+ +|+++.+++++.+.++++|++
T Consensus       111 p~~~--~~~a~l~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~  186 (329)
T cd08250         111 PELK--PEVLPLLVSGLTASIALEEVGEMKSGETVLVTAAAGGTGQFAVQLAKLAGC-HVIGTCSSDEKAEFLKSLGCD  186 (329)
T ss_pred             CCCc--chhhhcccHHHHHHHHHHHhcCCCCCCEEEEEeCccHHHHHHHHHHHHcCC-eEEEEeCcHHHHHHHHHcCCc
Confidence            9973  4667788899999998877788999999999986 9999999999999999 899999999999999999875

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.94  E-value=1.6e-25  Score=189.16  Aligned_cols=179  Identities=35%  Similarity=0.501  Sum_probs=157.3

Q ss_pred             eEEEEEeeeecchhhhhhhcCCCC-CCCCCcccccceEEEEEEcCCCCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCC
Q 025895           36 EVRIKILFTALCHTDAYTWSGKDP-EGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCG  114 (246)
Q Consensus        36 eVlVkv~~~~i~~~D~~~~~~~~~-~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~  114 (246)
                      ||+||+.++++|+.|...+.+..+ ...+|.++|||++|+|+++|+++..|++||+|+..+...|+.|.+|..    .|.
T Consensus         1 ~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~----~~~   76 (271)
T cd05188           1 EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPNLGCGTCELCRE----LCP   76 (271)
T ss_pred             CeEEEEEEEEecchhHHHHcCCCCcCCCCCcccccccEEEEEEECCCCCcCCCCCEEEEcCCCCCCCCHHHHh----hCC
Confidence            689999999999999999888764 345678999999999999999999999999999999999999999986    666


Q ss_pred             CccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCchhhhhccccchhhhhhhhhhCCCCC
Q 025895          115 KVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEP  194 (246)
Q Consensus       115 ~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~  194 (246)
                      ....   .+                   ....|+|++|+.++.+.++++|+++++++++.+++++.++|+++.....+.+
T Consensus        77 ~~~~---~~-------------------~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~  134 (271)
T cd05188          77 GGGI---LG-------------------EGLDGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKP  134 (271)
T ss_pred             CCCE---ec-------------------cccCCcceEEEEechHHeEECCCCCCHHHhhHhcCHHHHHHHHHHhccCCCC
Confidence            5442   11                   1123489999999999999999999999999999999999998877777789


Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      +++|||+|+|.+|++++++++..|. +|+++++++++.+.++++|++
T Consensus       135 ~~~vli~g~~~~G~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~  180 (271)
T cd05188         135 GDTVLVLGAGGVGLLAAQLAKAAGA-RVIVTDRSDEKLELAKELGAD  180 (271)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHhCCc
Confidence            9999999996699999999999998 999999999999999988876

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=99.94  E-value=2.2e-25  Score=194.38  Aligned_cols=187  Identities=19%  Similarity=0.204  Sum_probs=154.3

Q ss_pred             eeeeEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCC-CCCCCCcccccceEEEEEEcCCCCCccC
Q 025895           10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD-PEGLFPCILGHEAAGIVESVGEGVTEVQ   86 (246)
Q Consensus        10 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~-~~~~~p~v~G~e~vG~V~~vG~~~~~~~   86 (246)
                      |||+++.+.+++  +.+++.|.|.|.++||+||+.++++|+.|.....+.. ....+|.++|||++|+|+++|  +.+++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~~~--~~~~~   78 (326)
T cd08289           1 FQALVVEKDEDDVSVSVKNLTLDDLPEGDVLIRVAYSSVNYKDGLASIPGGKIVKRYPFIPGIDLAGTVVESN--DPRFK   78 (326)
T ss_pred             CeeEEEeccCCcceeEEEEccCCCCCCCeEEEEEEEEecChHHhhhhcCCccccCCCCcCcccceeEEEEEcC--CCCCC
Confidence            789999988774  8899999999999999999999999999987654321 122457899999999999964  46799


Q ss_pred             CCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCC
Q 025895           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (246)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~  166 (246)
                      +||+|+..+..                        .|.. .+                  |+|++|+.++.+.++++|++
T Consensus        79 ~Gd~V~~~~~~------------------------~~~~-~~------------------g~~~~~~~v~~~~~~~~p~~  115 (326)
T cd08289          79 PGDEVIVTSYD------------------------LGVS-HH------------------GGYSEYARVPAEWVVPLPKG  115 (326)
T ss_pred             CCCEEEEcccc------------------------cCCC-CC------------------CcceeEEEEcHHHeEECCCC
Confidence            99999865320                        1111 22                  38999999999999999999


Q ss_pred             CCchhhhhccccchhhhhhhhhh--CC-CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          167 APLDKVCLLGCGVPTGLGAVWNT--AK-VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~l~~~--~~-~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      +++++++.+++...|+|.++...  .. ...+++|||+|+ |.+|++++++|+.+|+ +|+++++++++.+.++++|++.
T Consensus       116 ~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~  194 (326)
T cd08289         116 LTLKEAMILGTAGFTAALSIHRLEENGLTPEQGPVLVTGATGGVGSLAVSILAKLGY-EVVASTGKADAADYLKKLGAKE  194 (326)
T ss_pred             CCHHHHhhhhhHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCchHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHHcCCCE
Confidence            99999999998898998876432  22 344789999998 9999999999999999 8999999999999999999863

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=99.94  E-value=2.9e-25  Score=192.38  Aligned_cols=187  Identities=27%  Similarity=0.396  Sum_probs=160.8

Q ss_pred             eeeeEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCC
Q 025895           10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP   87 (246)
Q Consensus        10 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~   87 (246)
                      ||++++...+.+  +++.+.+.|.+++++|+||+.++++|+.|+..+.+..+....|.++|||++|+|+++|+  ..+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~--~~~~~   78 (320)
T cd08243           1 MKAIVIEQPGGPEVLKLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPSVKFPRVLGIEAVGEVEEAPG--GTFTP   78 (320)
T ss_pred             CeEEEEcCCCCccceEEeecCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCccccceeEEEEEEecC--CCCCC
Confidence            688888876642  67788888889999999999999999999998887665445678999999999999995  57999


Q ss_pred             CCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCC
Q 025895           88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA  167 (246)
Q Consensus        88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~  167 (246)
                      ||+|+.....                        .+.. .                  .|+|++|+.++...++++|+++
T Consensus        79 Gd~V~~~~~~------------------------~~~~-~------------------~g~~~~~~~~~~~~~~~ip~~~  115 (320)
T cd08243          79 GQRVATAMGG------------------------MGRT-F------------------DGSYAEYTLVPNEQVYAIDSDL  115 (320)
T ss_pred             CCEEEEecCC------------------------CCCC-C------------------CcccceEEEcCHHHcEeCCCCC
Confidence            9999865320                        0000 1                  2389999999999999999999


Q ss_pred             CchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      ++++++.+++++.++|.++.....+.++++|+|+|+ |.+|++++++|+.+|+ +|+++..++++.+.++++|++.
T Consensus       116 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~  190 (320)
T cd08243         116 SWAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGTSSVGLAALKLAKALGA-TVTATTRSPERAALLKELGADE  190 (320)
T ss_pred             CHHHHHhcchHHHHHHHHHHHhcCCCCCCEEEEEcCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcE
Confidence            999999999999999998877788999999999998 9999999999999999 7999999999999999999853

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.94  E-value=3e-25  Score=191.61  Aligned_cols=177  Identities=19%  Similarity=0.168  Sum_probs=154.0

Q ss_pred             eeeeEeecCC-CCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCC
Q 025895           10 CKAAVAWEPN-KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (246)
Q Consensus        10 ~ka~~~~~~~-~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~G   88 (246)
                      ||++++.+++ ..+++++.|.|.++++||+||+.++++|+.|.......    ..|.++|||++|+|+++|+++..|++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~i~~~d~~~~~~~----~~~~~~g~e~~G~v~~~G~~v~~~~~G   76 (305)
T cd08270           1 MRALVVDPDAPLRLRLGEVPDPQPAPHEALVRVAAISLNRGELKFAAER----PDGAVPGWDAAGVVERAAADGSGPAVG   76 (305)
T ss_pred             CeEEEEccCCCceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHhhccC----CCCCcccceeEEEEEEeCCCCCCCCCC
Confidence            6889888754 12777799999999999999999999999998876521    235789999999999999999999999


Q ss_pred             CEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCC
Q 025895           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP  168 (246)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~  168 (246)
                      |+|+...                               .+                  |+|++|+.++.+.++++|++++
T Consensus        77 d~V~~~~-------------------------------~~------------------g~~~~~~~v~~~~~~~ip~~~~  107 (305)
T cd08270          77 ARVVGLG-------------------------------AM------------------GAWAELVAVPTGWLAVLPDGVS  107 (305)
T ss_pred             CEEEEec-------------------------------CC------------------cceeeEEEEchHHeEECCCCCC
Confidence            9997532                               12                  3899999999999999999999


Q ss_pred             chhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       169 ~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      +++++.+++.+.+||+++...... ++++|+|+|+ |.+|++++++++..|+ +++++++++++.+.++++|++
T Consensus       108 ~~~a~~~~~~~~ta~~~~~~~~~~-~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~  179 (305)
T cd08270         108 FAQAATLPVAGVTALRALRRGGPL-LGRRVLVTGASGGVGRFAVQLAALAGA-HVVAVVGSPARAEGLRELGAA  179 (305)
T ss_pred             HHHHHHhHhHHHHHHHHHHHhCCC-CCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCc
Confidence            999999999999999987655544 5999999998 9999999999999999 899999999999999999986

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=99.94  E-value=2.6e-25  Score=194.66  Aligned_cols=185  Identities=21%  Similarity=0.241  Sum_probs=160.7

Q ss_pred             eeeeEeecCCCC-----eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCc
Q 025895           10 CKAAVAWEPNKP-----LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTE   84 (246)
Q Consensus        10 ~ka~~~~~~~~~-----~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~   84 (246)
                      |||+++.+++++     ++++++|.|.+.+++|+||+.++++|+.|+..+.+..+...+|.++|||++|+|+++|+++..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~   80 (336)
T cd08252           1 MKAIGFTQPLPITDPDSLIDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPVPGQPKILGWDASGVVEAVGSEVTL   80 (336)
T ss_pred             CceEEecCCCCCCcccceeEccCCCCCCCCCEEEEEEEEEEcCHHHHHHHcCCCCCCCCCcccccceEEEEEEcCCCCCC
Confidence            589999988874     666778888889999999999999999999988776543346778999999999999999999


Q ss_pred             cCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcC
Q 025895           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (246)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip  164 (246)
                      +++||+|......                            ..+                  |+|++|+.++...++++|
T Consensus        81 ~~~Gd~V~~~~~~----------------------------~~~------------------g~~~~~~~v~~~~~~~ip  114 (336)
T cd08252          81 FKVGDEVYYAGDI----------------------------TRP------------------GSNAEYQLVDERIVGHKP  114 (336)
T ss_pred             CCCCCEEEEcCCC----------------------------CCC------------------ccceEEEEEchHHeeeCC
Confidence            9999999853210                            012                  389999999999999999


Q ss_pred             CCCCchhhhhccccchhhhhhhhhhCCCCC-----CCEEEEECC-CHHHHHHHHHHHHcC-CCeEEEEcCChhHHHHHhh
Q 025895          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEP-----GSIVAVFGL-GTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~-----~~~VlI~Ga-g~~G~~ai~~a~~~G-~~~vi~~~~~~~~~~~~~~  237 (246)
                      +++++++++.+++.+.++|.++.+...+.+     +++|+|+|+ |.+|++++++|+.+| + +|+++++++++.+.+++
T Consensus       115 ~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~g~~g~vg~~~~~~a~~~G~~-~v~~~~~~~~~~~~~~~  193 (336)
T cd08252         115 KSLSFAEAAALPLTSLTAWEALFDRLGISEDAENEGKTLLIIGGAGGVGSIAIQLAKQLTGL-TVIATASRPESIAWVKE  193 (336)
T ss_pred             CCCCHHHhhhhhhHHHHHHHHHHHhcCCCCCcCCCCCEEEEEcCCchHHHHHHHHHHHcCCc-EEEEEcCChhhHHHHHh
Confidence            999999999999999999998777777777     999999986 999999999999999 7 89999999999999999


Q ss_pred             cCCC
Q 025895          238 CVSS  241 (246)
Q Consensus       238 lg~~  241 (246)
                      +|++
T Consensus       194 ~g~~  197 (336)
T cd08252         194 LGAD  197 (336)
T ss_pred             cCCc
Confidence            9985

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=99.94  E-value=7.3e-26  Score=199.18  Aligned_cols=188  Identities=31%  Similarity=0.345  Sum_probs=158.7

Q ss_pred             eeeeEeecCC-CCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCC
Q 025895           10 CKAAVAWEPN-KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (246)
Q Consensus        10 ~ka~~~~~~~-~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~G   88 (246)
                      |||+++++++ ..++++++|.|.++++||+||++++++|+.|+....+.. ....|.++|||++|+|+.+|++++.+++|
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~-~~~~~~~~g~e~~G~v~~vG~~v~~~~~G   79 (339)
T cd08249           1 QKAAVLTGPGGGLLVVVDVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGF-IPSYPAILGCDFAGTVVEVGSGVTRFKVG   79 (339)
T ss_pred             CceEEeccCCCCcccccCCCCCCCCCCEEEEEEEEEEcCchheeeeeccc-ccCCCceeeeeeeEEEEEeCCCcCcCCCC
Confidence            7899999884 338999999999999999999999999999988775543 12356789999999999999999999999


Q ss_pred             CEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCC
Q 025895           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP  168 (246)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~  168 (246)
                      |+|+..+...|+                      +.. .                  .|+|++|+.++.+.++++|++++
T Consensus        80 d~V~~~~~~~~~----------------------~~~-~------------------~g~~~~~~~v~~~~~~~ip~~~~  118 (339)
T cd08249          80 DRVAGFVHGGNP----------------------NDP-R------------------NGAFQEYVVADADLTAKIPDNIS  118 (339)
T ss_pred             CEEEEEeccccC----------------------CCC-C------------------CCcccceEEechhheEECCCCCC
Confidence            999876532111                      000 2                  23899999999999999999999


Q ss_pred             chhhhhccccchhhhhhhhhhCCC----------CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          169 LDKVCLLGCGVPTGLGAVWNTAKV----------EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       169 ~~~aa~l~~~~~ta~~~l~~~~~~----------~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      +++++.+++.+.++|+++.+...+          +++++|+|+|+ |.+|++++++|+.+|+ +|+++. +++|.+.+++
T Consensus       119 ~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~a~~~G~-~v~~~~-~~~~~~~~~~  196 (339)
T cd08249         119 FEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGY-KVITTA-SPKNFDLVKS  196 (339)
T ss_pred             HHHceecchHHHHHHHHHhccccCCCCCCCCCCCCCCCEEEEEcChhHHHHHHHHHHHHcCC-eEEEEE-CcccHHHHHh
Confidence            999999999999999987665544          78999999998 8999999999999999 788876 5688899999


Q ss_pred             cCCC
Q 025895          238 CVSS  241 (246)
Q Consensus       238 lg~~  241 (246)
                      +|++
T Consensus       197 ~g~~  200 (339)
T cd08249         197 LGAD  200 (339)
T ss_pred             cCCC
Confidence            9986

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=99.94  E-value=4.4e-25  Score=191.98  Aligned_cols=183  Identities=28%  Similarity=0.356  Sum_probs=158.8

Q ss_pred             eeeeEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC---CCCCcccccceEEEEEEcCCCCCc
Q 025895           10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE---GLFPCILGHEAAGIVESVGEGVTE   84 (246)
Q Consensus        10 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~---~~~p~v~G~e~vG~V~~vG~~~~~   84 (246)
                      |||+++++++.+  +++.+.+.|.+.+++|+||+.++++|+.|...+.+..+.   ...|.++|||++|+|+++|+++..
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v~~~G~~v~~   80 (324)
T cd08244           1 MRAIRLHEFGPPEVLVPEDVPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGVDP   80 (324)
T ss_pred             CeEEEEcCCCCccceEEeccCCCCCCCCEEEEEEEEEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEEEEeCCCCCC
Confidence            689999876653  677788888889999999999999999999888775432   345788999999999999999999


Q ss_pred             cCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcC
Q 025895           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (246)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip  164 (246)
                      +++||+|+....                             ..+|                  +|++|+.++...++++|
T Consensus        81 ~~~Gd~V~~~~~-----------------------------~~~g------------------~~~~~~~v~~~~~~~lp  113 (324)
T cd08244          81 AWLGRRVVAHTG-----------------------------RAGG------------------GYAELAVADVDSLHPVP  113 (324)
T ss_pred             CCCCCEEEEccC-----------------------------CCCc------------------eeeEEEEEchHHeEeCC
Confidence            999999985421                             0123                  89999999999999999


Q ss_pred             CCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      +++++++++.+++.+.++|. +.....++++++|+|+|+ |.+|++++++|+.+|+ +|+++++++++.+.++++|++
T Consensus       114 ~~~~~~~a~~~~~~~~ta~~-~~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~-~v~~~~~~~~~~~~~~~~g~~  189 (324)
T cd08244         114 DGLDLEAAVAVVHDGRTALG-LLDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGA-TVVGAAGGPAKTALVRALGAD  189 (324)
T ss_pred             CCCCHHHHhhhcchHHHHHH-HHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCC
Confidence            99999999999999999954 667788999999999986 9999999999999999 899999999999999989886

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=99.94  E-value=6e-25  Score=191.49  Aligned_cols=185  Identities=26%  Similarity=0.263  Sum_probs=155.2

Q ss_pred             eeeEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCCccCC
Q 025895           11 KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQP   87 (246)
Q Consensus        11 ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~~~~~   87 (246)
                      ||++++..+.+  ++++|+|.|.+.+++|+||+.++++|+.|...+.+.++. ...|.++|||++|+|+.  +++..|++
T Consensus         1 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~~   78 (323)
T TIGR02823         1 KALVVEKEDGKVSAQVETLDLSDLPEGDVLIKVAYSSLNYKDALAITGKGGVVRSYPMIPGIDAAGTVVS--SEDPRFRE   78 (323)
T ss_pred             CeEEEccCCCCcceeEeecCCCCCCCCeEEEEEEEEEcCHHHHHHHcCCCCCCCCCCccceeeeEEEEEe--cCCCCCCC
Confidence            68888877764  689999999999999999999999999999988886532 35588999999999998  55678999


Q ss_pred             CCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCC
Q 025895           88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA  167 (246)
Q Consensus        88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~  167 (246)
                      ||+|+..+..                        .|.. .+                  |+|++|+.++.+.++++|+++
T Consensus        79 Gd~V~~~~~~------------------------~~~~-~~------------------g~~~~~~~~~~~~~~~iP~~~  115 (323)
T TIGR02823        79 GDEVIVTGYG------------------------LGVS-HD------------------GGYSQYARVPADWLVPLPEGL  115 (323)
T ss_pred             CCEEEEccCC------------------------CCCC-CC------------------ccceEEEEEchhheEECCCCC
Confidence            9999865321                        0110 12                  389999999999999999999


Q ss_pred             Cchhhhhccccchhhhhhhhhh--CCCCCCC-EEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          168 PLDKVCLLGCGVPTGLGAVWNT--AKVEPGS-IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~l~~~--~~~~~~~-~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      ++++++.+++.+.+++.++...  ..+.+++ +|+|+|+ |.+|++++++|+.+|+ +++++..++++.+.++++|++
T Consensus       116 ~~~~aa~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~la~~~G~-~vi~~~~~~~~~~~~~~~g~~  192 (323)
T TIGR02823       116 SLREAMALGTAGFTAALSVMALERNGLTPEDGPVLVTGATGGVGSLAVAILSKLGY-EVVASTGKAEEEDYLKELGAS  192 (323)
T ss_pred             CHHHhhhhhhhHHHHHHHHHHhhhcCCCCCCceEEEEcCCcHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHhcCCc
Confidence            9999999998888888765332  3478888 9999998 9999999999999999 788888888888999999986

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=99.93  E-value=8.8e-25  Score=190.37  Aligned_cols=186  Identities=20%  Similarity=0.212  Sum_probs=155.4

Q ss_pred             eeeeEeecCCC--CeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCCccC
Q 025895           10 CKAAVAWEPNK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ   86 (246)
Q Consensus        10 ~ka~~~~~~~~--~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~~~~   86 (246)
                      |||+++++++.  .++++|+|.|.|++++|+||+.++++|+.|...+.+.... ..+|.++|||++|+|++  +++.+++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~   78 (324)
T cd08288           1 FKALVLEKDDGGTSAELRELDESDLPEGDVTVEVHYSTLNYKDGLAITGKGGIVRTFPLVPGIDLAGTVVE--SSSPRFK   78 (324)
T ss_pred             CeeEEEeccCCCcceEEEECCCCCCCCCeEEEEEEEEecCHHHHHHhcCCccccCCCCCccccceEEEEEe--CCCCCCC
Confidence            78999998875  3899999999999999999999999999999888776432 24578899999999999  6777899


Q ss_pred             CCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCC
Q 025895           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (246)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~  166 (246)
                      +||+|+.....              +          |                   .+..|+|++|+.++.+.++++|++
T Consensus        79 ~Gd~V~~~~~~--------------~----------~-------------------~~~~g~~~~~~~v~~~~~~~lp~~  115 (324)
T cd08288          79 PGDRVVLTGWG--------------V----------G-------------------ERHWGGYAQRARVKADWLVPLPEG  115 (324)
T ss_pred             CCCEEEECCcc--------------C----------C-------------------CCCCCcceeEEEEchHHeeeCCCC
Confidence            99999864210              0          0                   001238999999999999999999


Q ss_pred             CCchhhhhccccchhhhhhhh--hhCCCC-CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          167 APLDKVCLLGCGVPTGLGAVW--NTAKVE-PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~l~--~~~~~~-~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      +++++++.+++.+.+++.++.  ...... ++++|+|+|+ |.+|++++|+|+.+|+ ++++++.+++|.+.++++|++
T Consensus       116 ~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~A~~~G~-~vi~~~~~~~~~~~~~~~g~~  193 (324)
T cd08288         116 LSARQAMAIGTAGFTAMLCVMALEDHGVTPGDGPVLVTGAAGGVGSVAVALLARLGY-EVVASTGRPEEADYLRSLGAS  193 (324)
T ss_pred             CCHHHHhhhhhHHHHHHHHHHHHhhcCcCCCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHhcCCC
Confidence            999999999988888876543  123444 6789999998 9999999999999999 899999999999999999986

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.93  E-value=2.4e-24  Score=188.05  Aligned_cols=181  Identities=24%  Similarity=0.295  Sum_probs=160.1

Q ss_pred             eeeeEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCCccC
Q 025895           10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ   86 (246)
Q Consensus        10 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~~~~   86 (246)
                      .||+++...+.+  +++++.+.|.|.+++|+||+.++++|+.|..++.+.... ..+|.++|||++|+|+.+|+++..++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~   80 (331)
T cd08273           1 NREVVVTRRGGPEVLKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQPPLPFTPGYDLVGRVDALGSGVTGFE   80 (331)
T ss_pred             CeeEEEccCCCcccEEEeccCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceEEEEEEeCCCCccCC
Confidence            378899987754  888999999999999999999999999999988776532 24688999999999999999999999


Q ss_pred             CCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCC
Q 025895           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (246)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~  166 (246)
                      +||+|...+.                               .                  |+|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~-------------------------------~------------------g~~~~~~~~~~~~~~~~p~~  111 (331)
T cd08273          81 VGDRVAALTR-------------------------------V------------------GGNAEYINLDAKYLVPVPEG  111 (331)
T ss_pred             CCCEEEEeCC-------------------------------C------------------cceeeEEEechHHeEECCCC
Confidence            9999986421                               1                  28999999999999999999


Q ss_pred             CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      +++.+++.+++++.++|.++.+...+.++++|+|+|+ |.+|++++++++.+|+ +|+++.. +++.+.++++|++
T Consensus       112 ~~~~~a~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-~v~~~~~-~~~~~~~~~~g~~  185 (331)
T cd08273         112 VDAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELALLAGA-EVYGTAS-ERNHAALRELGAT  185 (331)
T ss_pred             CCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEeC-HHHHHHHHHcCCe
Confidence            9999999999999999998877788999999999997 9999999999999999 8888887 8888998888854

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.93  E-value=5.8e-24  Score=184.55  Aligned_cols=184  Identities=28%  Similarity=0.379  Sum_probs=160.3

Q ss_pred             eeeeEeecCC--CCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCC
Q 025895           10 CKAAVAWEPN--KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP   87 (246)
Q Consensus        10 ~ka~~~~~~~--~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~   87 (246)
                      |||+++.+++  +.++++++|.|.+.+++|+||+.++++|+.|.....+......+|.++|||++|+|+.+|+++..+++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~~   80 (325)
T cd08271           1 MKAWVLPKPGAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPAWSYPHVPGVDGAGVVVAVGAKVTGWKV   80 (325)
T ss_pred             CeeEEEccCCCcceeEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCcccccceEEEEEEeCCCCCcCCC
Confidence            7999999988  34999999999999999999999999999999887776543344778999999999999999999999


Q ss_pred             CCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCC
Q 025895           88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA  167 (246)
Q Consensus        88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~  167 (246)
                      ||+|...+...                            .+                  ++|++|+.++.+.++++|+++
T Consensus        81 Gd~V~~~~~~~----------------------------~~------------------~~~~s~~~~~~~~~~~ip~~~  114 (325)
T cd08271          81 GDRVAYHASLA----------------------------RG------------------GSFAEYTVVDARAVLPLPDSL  114 (325)
T ss_pred             CCEEEeccCCC----------------------------CC------------------ccceeEEEeCHHHeEECCCCC
Confidence            99998653200                            12                  389999999999999999999


Q ss_pred             CchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      ++.+++.+.+.+.++|.++.+...+.++++|+|+|+ |.+|++++++++..|+ .++++. ++++.+.+.++|++
T Consensus       115 ~~~~~a~~~~~~~~a~~~~~~~~~~~~g~~vlI~g~~~~ig~~~~~~a~~~g~-~v~~~~-~~~~~~~~~~~g~~  187 (325)
T cd08271         115 SFEEAAALPCAGLTAYQALFKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGL-RVITTC-SKRNFEYVKSLGAD  187 (325)
T ss_pred             CHHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEE-cHHHHHHHHHcCCc
Confidence            999999999999999998878888999999999998 8999999999999999 777776 67788888888875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=99.93  E-value=4.8e-24  Score=188.33  Aligned_cols=187  Identities=22%  Similarity=0.252  Sum_probs=153.7

Q ss_pred             eeeeEeecCCCCeEEEEeecCCC---CCCeEEEEEeeeecchhhhhhhcCCCCCC-CCCcccccceEEEEEEcCCCCC-c
Q 025895           10 CKAAVAWEPNKPLVIEDVQVAPP---QAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPCILGHEAAGIVESVGEGVT-E   84 (246)
Q Consensus        10 ~ka~~~~~~~~~~~~~e~~~p~~---~~~eVlVkv~~~~i~~~D~~~~~~~~~~~-~~p~v~G~e~vG~V~~vG~~~~-~   84 (246)
                      .|+++++++++++++++++.|.|   ++++|+||+.++++|++|...+.+..... ..|.++|+|++|+|+++|+++. .
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~I~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~   80 (352)
T cd08247           1 YKALTFKNNTSPLTITTIKLPLPNCYKDNEIVVKVHAAALNPVDLKLYNSYTFHFKVKEKGLGRDYSGVIVKVGSNVASE   80 (352)
T ss_pred             CceEEEecCCCcceeeccCCCCCCCCCCCeEEEEEEEEecChHhHHHhcccccccccCCCccCceeEEEEEEeCcccccC
Confidence            37899999998888888887776   89999999999999999988775432211 2377899999999999999998 8


Q ss_pred             cCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecC----ce
Q 025895           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV----SV  160 (246)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~  160 (246)
                      |++||+|+......|+                          .                  .|+|++|++++..    .+
T Consensus        81 ~~~Gd~V~~~~~~~~~--------------------------~------------------~g~~~~~~~v~~~~~~~~~  116 (352)
T cd08247          81 WKVGDEVCGIYPHPYG--------------------------G------------------QGTLSQYLLVDPKKDKKSI  116 (352)
T ss_pred             CCCCCEEEEeecCCCC--------------------------C------------------CceeeEEEEEcccccccee
Confidence            9999999865321100                          1                  2389999999987    79


Q ss_pred             EEcCCCCCchhhhhccccchhhhhhhhhhC-CCCCCCEEEEECC-CHHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHhh
Q 025895          161 AKIDPQAPLDKVCLLGCGVPTGLGAVWNTA-KVEPGSIVAVFGL-GTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       161 ~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~-~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~-~~vi~~~~~~~~~~~~~~  237 (246)
                      +++|+++++.+++.+++.+.++|+++.... .++++++|+|+|+ +.+|++++++|+.+|. +.++++. ++++.+.+++
T Consensus       117 ~~lP~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~g~~vlI~ga~~~vg~~~~~~a~~~~~~~~v~~~~-~~~~~~~~~~  195 (352)
T cd08247         117 TRKPENISLEEAAAWPLVLGTAYQILEDLGQKLGPDSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTC-SSRSAELNKK  195 (352)
T ss_pred             EECCCCCCHHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEECCCchHHHHHHHHHHhcCCcceEEEEe-ChhHHHHHHH
Confidence            999999999999999999999999876666 7999999999988 7999999999999854 3567765 4555667788


Q ss_pred             cCCC
Q 025895          238 CVSS  241 (246)
Q Consensus       238 lg~~  241 (246)
                      +|++
T Consensus       196 ~g~~  199 (352)
T cd08247         196 LGAD  199 (352)
T ss_pred             hCCC
Confidence            8886

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=99.92  E-value=4.7e-24  Score=184.05  Aligned_cols=182  Identities=29%  Similarity=0.341  Sum_probs=159.8

Q ss_pred             eeeeEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCCccC
Q 025895           10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ   86 (246)
Q Consensus        10 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~~~~   86 (246)
                      ||++++.+.+.+  +++.+.+.|.+.+++|+||+.++++|+.|+....+.++. ..+|.++|||++|+|+++|+++..++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~   80 (323)
T cd05276           1 MKAIVIKEPGGPEVLELGEVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPPPPGASDILGLEVAGVVVAVGPGVTGWK   80 (323)
T ss_pred             CeEEEEecCCCcccceEEecCCCCCCCCEEEEEEEEeecCHHHHHHhCCCCCCCCCCCCcccceeEEEEEeeCCCCCCCC
Confidence            799999885543  778888888889999999999999999999888775532 34678999999999999999998999


Q ss_pred             CCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCC
Q 025895           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (246)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~  166 (246)
                      +||+|....                               .+                  |+|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~-------------------------------~~------------------g~~~~~~~~~~~~~~~~p~~  111 (323)
T cd05276          81 VGDRVCALL-------------------------------AG------------------GGYAEYVVVPAGQLLPVPEG  111 (323)
T ss_pred             CCCEEEEec-------------------------------CC------------------CceeEEEEcCHHHhccCCCC
Confidence            999997542                               11                  28999999999999999999


Q ss_pred             CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      +++.+++.+...+.++|.++.+...+.++++|+|+|+ |.+|++++++++.+|+ .++++++++++++.++++|++
T Consensus       112 ~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~g~~  186 (323)
T cd05276         112 LSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQLAKALGA-RVIATAGSEEKLEACRALGAD  186 (323)
T ss_pred             CCHHHHhhchhHHHHHHHHHHHhcCCCCCCEEEEEcCcChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCC
Confidence            9999999999999999998777788999999999997 8999999999999999 899999999999988888865

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=99.92  E-value=5.6e-24  Score=183.96  Aligned_cols=187  Identities=28%  Similarity=0.373  Sum_probs=162.2

Q ss_pred             eeeeEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCC-CCCCCcccccceEEEEEEcCCCCCccC
Q 025895           10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCILGHEAAGIVESVGEGVTEVQ   86 (246)
Q Consensus        10 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~-~~~~p~v~G~e~vG~V~~vG~~~~~~~   86 (246)
                      ||++++..++.+  +++.++|.|.+.+++|+|++.++++|+.|.....+... ....|.++|||++|+|+++|+++.+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~   80 (325)
T cd08253           1 MRAIRYHEFGAPDVLRLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVPGSDGAGVVEAVGEGVDGLK   80 (325)
T ss_pred             CceEEEcccCCcccceeeecCCCCCCCCEEEEEEEEEecChhHhhhccCCCCCCCCCCeecccceEEEEEeeCCCCCCCC
Confidence            688888876544  88899999999999999999999999999988777543 235688999999999999999999999


Q ss_pred             CCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCC
Q 025895           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (246)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~  166 (246)
                      +||+|+..+..                          .....                  |++++|+.++.+.++++|++
T Consensus        81 ~Gd~v~~~~~~--------------------------~~~~~------------------g~~~~~~~~~~~~~~~ip~~  116 (325)
T cd08253          81 VGDRVWLTNLG--------------------------WGRRQ------------------GTAAEYVVVPADQLVPLPDG  116 (325)
T ss_pred             CCCEEEEeccc--------------------------cCCCC------------------cceeeEEEecHHHcEeCCCC
Confidence            99999866420                          00012                  38999999999999999999


Q ss_pred             CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      +++.+++.+++++.++|+++.....+.++++|+|+|+ |.+|++++++++.+|+ +|+++++++++.+.+.++|++
T Consensus       117 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~  191 (325)
T cd08253         117 VSFEQGAALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGA-RVIATASSAEGAELVRQAGAD  191 (325)
T ss_pred             CCHHHHhhhhhHHHHHHHHHHHHhCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCC
Confidence            9999999999999999998877788999999999987 9999999999999999 899999999999999888875

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.92  E-value=7.6e-24  Score=183.56  Aligned_cols=186  Identities=28%  Similarity=0.356  Sum_probs=160.4

Q ss_pred             eeeeEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCC-CCCCCcccccceEEEEEEcCCCCCccC
Q 025895           10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCILGHEAAGIVESVGEGVTEVQ   86 (246)
Q Consensus        10 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~-~~~~p~v~G~e~vG~V~~vG~~~~~~~   86 (246)
                      |||+++.+.+.+  +++++.+.|.+.+++|+|++.++++|+.|.....+... ....|.++|||++|+|+++|+++..++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (326)
T cd08272           1 MKALVLESFGGPEVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPAILGCDVAGVVEAVGEGVTRFR   80 (326)
T ss_pred             CeEEEEccCCCchheEEeecCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceeEEEEEeCCCCCCCC
Confidence            689999988775  78888888889999999999999999999988777643 223578899999999999999999999


Q ss_pred             CCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCC
Q 025895           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (246)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~  166 (246)
                      +||+|.....                          |.....                  |+|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~--------------------------~~~~~~------------------g~~~~~~~v~~~~~~~~p~~  116 (326)
T cd08272          81 VGDEVYGCAG--------------------------GLGGLQ------------------GSLAEYAVVDARLLALKPAN  116 (326)
T ss_pred             CCCEEEEccC--------------------------CcCCCC------------------CceeEEEEecHHHcccCCCC
Confidence            9999985431                          000012                  38999999999999999999


Q ss_pred             CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      +++..++.+++.+.++|+++.+...+.++++++|+|+ |.+|++++++++.+|+ +|++++++ ++.+.++++|++
T Consensus       117 ~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~-~~~~~~~~~g~~  190 (326)
T cd08272         117 LSMREAAALPLVGITAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGA-RVYATASS-EKAAFARSLGAD  190 (326)
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEech-HHHHHHHHcCCC
Confidence            9999999998899999998778889999999999986 9999999999999999 88888888 888888888875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=99.92  E-value=4.4e-24  Score=187.58  Aligned_cols=174  Identities=30%  Similarity=0.410  Sum_probs=142.9

Q ss_pred             eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCC----CCCcccccceEEEE---EEcC-CCCCccCCCCEEEe
Q 025895           22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG----LFPCILGHEAAGIV---ESVG-EGVTEVQPGDHVIP   93 (246)
Q Consensus        22 ~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~----~~p~v~G~e~vG~V---~~vG-~~~~~~~~Gd~V~~   93 (246)
                      ...++.|+|.|++++++|++.++++|+.|+.+..+.+...    .+|.+++.++.|.+   ...| ..+..+..||.+..
T Consensus        20 ~~~~~~~iP~~~~~~~~i~~~a~a~NpiD~~~~~g~~~~~~~~~~~p~ii~~~g~~~~~~~~~~g~~~~~~~~~g~~~~~   99 (347)
T KOG1198|consen   20 LFSEEVPIPEPEDGEVLIKVVAVALNPIDLKIRNGYYSPIPLGREFPGIIGRDGSGVVGAVESVGDDVVGGWVHGDAVVA   99 (347)
T ss_pred             EEeecccCCCCCCCceEEEEEEeccChHHHHHHccCcCCCCCccCCCCccccccCCceeEEeccccccccceEeeeEEee
Confidence            4567899999999999999999999999999998887653    36755555555553   3334 22233455554432


Q ss_pred             eCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCchhhh
Q 025895           94 CYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVC  173 (246)
Q Consensus        94 ~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa  173 (246)
                      .                                                 ...|+|+||.++|...++++|+++++.+++
T Consensus       100 ~-------------------------------------------------~~~g~~aey~v~p~~~~~~~P~~l~~~~aa  130 (347)
T KOG1198|consen  100 F-------------------------------------------------LSSGGLAEYVVVPEKLLVKIPESLSFEEAA  130 (347)
T ss_pred             c-------------------------------------------------cCCCceeeEEEcchhhccCCCCccChhhhh
Confidence            2                                                 223499999999999999999999999999


Q ss_pred             hccccchhhhhhhhhhC------CCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC--ccc
Q 025895          174 LLGCGVPTGLGAVWNTA------KVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS--SKY  244 (246)
Q Consensus       174 ~l~~~~~ta~~~l~~~~------~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~--~~~  244 (246)
                      .++.++.|||.+++...      +.+++++|||+|+ |++|++++|+|++.|+ ..+++.++++++++++++|||  ++|
T Consensus       131 ~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~~~-~~v~t~~s~e~~~l~k~lGAd~vvdy  209 (347)
T KOG1198|consen  131 ALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSGGVGTAAIQLAKHAGA-IKVVTACSKEKLELVKKLGADEVVDY  209 (347)
T ss_pred             cCchHHHHHHHHHHhccccccccccCCCCeEEEEeCCcHHHHHHHHHHHhcCC-cEEEEEcccchHHHHHHcCCcEeecC
Confidence            99999999999999999      8999999999977 8999999999999996 677777999999999999999  555


Q ss_pred             c
Q 025895          245 H  245 (246)
Q Consensus       245 ~  245 (246)
                      +
T Consensus       210 ~  210 (347)
T KOG1198|consen  210 K  210 (347)
T ss_pred             C
Confidence            4

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=99.92  E-value=1.5e-23  Score=181.51  Aligned_cols=172  Identities=26%  Similarity=0.359  Sum_probs=145.2

Q ss_pred             ecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhh-cCCCCC--CCCCcccccceEEEEEEcCCCCCccCCCCEEE
Q 025895           16 WEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTW-SGKDPE--GLFPCILGHEAAGIVESVGEGVTEVQPGDHVI   92 (246)
Q Consensus        16 ~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~-~~~~~~--~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd~V~   92 (246)
                      ++.++ +++++++.|++.++||+||+.++++|+.|...+ .+....  +.+|.++|+|++|+|+++|++++++++||+|+
T Consensus         2 ~~~~~-~~~~~~~~~~l~~~ev~v~v~~~~i~~~d~~~~~~g~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~   80 (312)
T cd08269           2 TGPGR-FEVEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVALGPGVRGLAVGDRVA   80 (312)
T ss_pred             CCCCe-eEEEECCCCCCCCCeEEEEEEEeeecccchHHHccCCCCcccCCCCcccceeeEEEEEEECCCCcCCCCCCEEE
Confidence            34555 999999999999999999999999999998887 665322  23478999999999999999999999999998


Q ss_pred             eeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCchhh
Q 025895           93 PCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKV  172 (246)
Q Consensus        93 ~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~a  172 (246)
                      ..+                                                  .|+|++|+.++.+.++++|+++  ..+
T Consensus        81 ~~~--------------------------------------------------~g~~~~~~~v~~~~~~~lP~~~--~~~  108 (312)
T cd08269          81 GLS--------------------------------------------------GGAFAEYDLADADHAVPLPSLL--DGQ  108 (312)
T ss_pred             Eec--------------------------------------------------CCcceeeEEEchhheEECCCch--hhh
Confidence            542                                                  1289999999999999999998  223


Q ss_pred             hhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          173 CLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       173 a~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      +.+..++.++++++. ..+++++++|+|+|+|.+|++++++|+.+|+..++++.+++++.++++++|++
T Consensus       109 ~~~~~~~~~a~~~~~-~~~~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~  176 (312)
T cd08269         109 AFPGEPLGCALNVFR-RGWIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGAT  176 (312)
T ss_pred             HHhhhhHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCc
Confidence            322367788888764 78889999999998899999999999999994399999999999999999886

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=99.92  E-value=1.3e-23  Score=182.76  Aligned_cols=170  Identities=22%  Similarity=0.318  Sum_probs=152.1

Q ss_pred             eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCCccCCCCEEEeeCCCCCC
Q 025895           22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECR  100 (246)
Q Consensus        22 ~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd~V~~~~~~~~~  100 (246)
                      +++++.|.|.+.+++|+||++++++|+.|...+.+.... ..+|.++|||++|+|+++|+++..+++||+|+..+.    
T Consensus        14 ~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~----   89 (323)
T cd05282          14 LELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSRPPLPAVPGNEGVGVVVEVGSGVSGLLVGQRVLPLGG----   89 (323)
T ss_pred             EEeEeCCCCCCCCCeEEEEEEeccCCHHHHHHhcCcCCCCCCCCCcCCcceEEEEEEeCCCCCCCCCCCEEEEeCC----
Confidence            677888889999999999999999999999988776532 356789999999999999999999999999986531    


Q ss_pred             CChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCchhhhhccccch
Q 025895          101 ECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP  180 (246)
Q Consensus       101 ~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~l~~~~~  180 (246)
                                                 +|                  +|++|+.++...++++|+++++.+++.+++...
T Consensus        90 ---------------------------~g------------------~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~  124 (323)
T cd05282          90 ---------------------------EG------------------TWQEYVVAPADDLIPVPDSISDEQAAMLYINPL  124 (323)
T ss_pred             ---------------------------CC------------------cceeEEecCHHHeEECCCCCCHHHHHHHhccHH
Confidence                                       22                  899999999999999999999999999989999


Q ss_pred             hhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          181 TGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       181 ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      ++|.++.....+.++++|+|+|+ |.+|++++++|+.+|+ .++++.+++++.+.++++|++
T Consensus       125 ta~~~~~~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~  185 (323)
T cd05282         125 TAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGF-KTINVVRRDEQVEELKALGAD  185 (323)
T ss_pred             HHHHHHHHhccCCCCCEEEEcccccHHHHHHHHHHHHCCC-eEEEEecChHHHHHHHhcCCC
Confidence            99998877778899999999988 8999999999999999 889999999999999999986

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=99.91  E-value=4.5e-23  Score=177.73  Aligned_cols=181  Identities=32%  Similarity=0.389  Sum_probs=157.2

Q ss_pred             eeeEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCC
Q 025895           11 KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (246)
Q Consensus        11 ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~G   88 (246)
                      ||+.+...+.+  +.+.+.+.+.+.+++|+||+.++++|+.|.....+..+. .+|.++|||++|+|+.+|+++.++++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~~~~~~-~~~~~~g~e~~G~v~~~g~~~~~~~~G   79 (320)
T cd05286           1 KAVRIHKTGGPEVLEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYPL-PLPFVLGVEGAGVVEAVGPGVTGFKVG   79 (320)
T ss_pred             CeEEEecCCCccceEEeecCCCCCCCCEEEEEEEEeecCHHHHHHhcCCCCC-CCCccCCcceeEEEEEECCCCCCCCCC
Confidence            46666655543  667788877789999999999999999999988776543 457789999999999999999999999


Q ss_pred             CEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCC
Q 025895           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP  168 (246)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~  168 (246)
                      |+|+...                               ..                  |+|++|+.++.+.++++|++++
T Consensus        80 ~~V~~~~-------------------------------~~------------------g~~~~~~~~~~~~~~~~p~~~~  110 (320)
T cd05286          80 DRVAYAG-------------------------------PP------------------GAYAEYRVVPASRLVKLPDGIS  110 (320)
T ss_pred             CEEEEec-------------------------------CC------------------CceeEEEEecHHHceeCCCCCC
Confidence            9998542                               02                  2899999999999999999999


Q ss_pred             chhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       169 ~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      +.+++.+.+...++|.++.....+.++++|+|+|+ |.+|++++++++.+|+ .|+++++++++.+.++++|++.
T Consensus       111 ~~~~~~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~  184 (320)
T cd05286         111 DETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGA-TVIGTVSSEEKAELARAAGADH  184 (320)
T ss_pred             HHHHhhccchHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHCCCCE
Confidence            99999988899999998877788999999999996 9999999999999999 8999999999999999898753

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=99.91  E-value=5.9e-23  Score=176.50  Aligned_cols=184  Identities=28%  Similarity=0.333  Sum_probs=156.7

Q ss_pred             eeeeEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCC---CCCCCcccccceEEEEEEcCCCCCc
Q 025895           10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGEGVTE   84 (246)
Q Consensus        10 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~---~~~~p~v~G~e~vG~V~~vG~~~~~   84 (246)
                      ||++++..++..  +++++.+.|.+++++|+||+.++++|+.|+..+.+...   ....|.++|||++|+|+.+|+++.+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~   80 (309)
T cd05289           1 MKAVRIHEYGGPEVLELADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVTG   80 (309)
T ss_pred             CceEEEcccCCccceeecccCCCCCCCCeEEEEEEEeeCCHHHHHHhcCCccccCCCCCCCccccceeEEEEeeCCCCCC
Confidence            688898877654  56778888888999999999999999999998877542   2345789999999999999999999


Q ss_pred             cCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcC
Q 025895           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (246)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip  164 (246)
                      +++||+|...+..                         +   .+                  |+|++|+.++...++++|
T Consensus        81 ~~~G~~V~~~~~~-------------------------~---~~------------------g~~~~~~~~~~~~~~~~p  114 (309)
T cd05289          81 FKVGDEVFGMTPF-------------------------T---RG------------------GAYAEYVVVPADELALKP  114 (309)
T ss_pred             CCCCCEEEEccCC-------------------------C---CC------------------CcceeEEEecHHHhccCC
Confidence            9999999865420                         0   12                  389999999999999999


Q ss_pred             CCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      +++++..++.+.+...++|.++.....+.++++|+|+|+ |.+|++++++++..|+ +++++..++ +.+.++++|++
T Consensus       115 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~-~~~~~~~~g~~  190 (309)
T cd05289         115 ANLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGA-RVIATASAA-NADFLRSLGAD  190 (309)
T ss_pred             CCCCHHHHHhhhHHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEecch-hHHHHHHcCCC
Confidence            999999999988889999998777667899999999997 9999999999999999 788887777 88888888864

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.91  E-value=1.3e-22  Score=175.78  Aligned_cols=187  Identities=33%  Similarity=0.390  Sum_probs=159.8

Q ss_pred             eeeeEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCCccC
Q 025895           10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ   86 (246)
Q Consensus        10 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~~~~   86 (246)
                      ||++++...+.+  +.+.+.+.|.+.+++++|++.++++|+.|.....+.... ..+|.++|||++|+|+.+|+++.+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (328)
T cd08268           1 MRAVRFHQFGGPEVLRIEELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEPPPLPARLGYEAAGVVEAVGAGVTGFA   80 (328)
T ss_pred             CeEEEEeccCCcceeEEeecCCCCCCCCeEEEEEEEEecChHHhheeccccCCCCCCCCCCCcceEEEEEeeCCCCCcCC
Confidence            688888875543  777888888899999999999999999998887665432 24577899999999999999999999


Q ss_pred             CCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCC
Q 025895           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (246)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~  166 (246)
                      +||+|...+...+.                          .                  .|++++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~~~~~--------------------------~------------------~g~~~~~~~~~~~~~~~~p~~  116 (328)
T cd08268          81 VGDRVSVIPAADLG--------------------------Q------------------YGTYAEYALVPAAAVVKLPDG  116 (328)
T ss_pred             CCCEEEeccccccC--------------------------C------------------CccceEEEEechHhcEeCCCC
Confidence            99999865421000                          1                  238999999999999999999


Q ss_pred             CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      +++.+++.+++.+.++|.++.....+.++++++|+|+ |.+|++++++++..|+ +++++++++++.+.++++|.+
T Consensus       117 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~g~~  191 (328)
T cd08268         117 LSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVGLAAIQIANAAGA-TVIATTRTSEKRDALLALGAA  191 (328)
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCC
Confidence            9999999999999999998877788899999999998 9999999999999999 899999999999888888764

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=99.90  E-value=2.7e-22  Score=173.56  Aligned_cols=182  Identities=28%  Similarity=0.328  Sum_probs=158.0

Q ss_pred             eeeeEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCCccC
Q 025895           10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ   86 (246)
Q Consensus        10 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~~~~   86 (246)
                      ||++.+...+.+  +++.+.+.|.+.+++++||+.++++|+.|...+.+.+.. ..+|.++|||++|+|+.+|+.+.+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~   80 (325)
T TIGR02824         1 MKAIEITEPGGPEVLVLVEVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPPPPGASDILGLEVAGEVVAVGEGVSRWK   80 (325)
T ss_pred             CceEEEccCCCcccceEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCCccceeEEEEEEeCCCCCCCC
Confidence            678888876655  677777777789999999999999999999888765532 23578999999999999999999999


Q ss_pred             CCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCC
Q 025895           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (246)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~  166 (246)
                      +||+|+...                               .+                  |+|++|+.++...++++|++
T Consensus        81 ~Gd~V~~~~-------------------------------~~------------------~~~~~~~~~~~~~~~~ip~~  111 (325)
T TIGR02824        81 VGDRVCALV-------------------------------AG------------------GGYAEYVAVPAGQVLPVPEG  111 (325)
T ss_pred             CCCEEEEcc-------------------------------CC------------------CcceeEEEecHHHcEeCCCC
Confidence            999997531                               11                  28999999999999999999


Q ss_pred             CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      +++..++.+.++..++|.++.....+.++++++|+|+ |.+|++++++++.+|+ +|+++.+++++.+.++++|.+
T Consensus       112 ~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~  186 (325)
T TIGR02824       112 LSLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGA-RVFTTAGSDEKCAACEALGAD  186 (325)
T ss_pred             CCHHHHHhhhHHHHHHHHHHHHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCc
Confidence            9999999999999999998778888999999999997 9999999999999999 899999999998888888764

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=99.90  E-value=3.5e-22  Score=174.37  Aligned_cols=177  Identities=23%  Similarity=0.209  Sum_probs=146.9

Q ss_pred             eeeeEeecCCC------CeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCC---CCCCCcccccceEEEEEEcCC
Q 025895           10 CKAAVAWEPNK------PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGE   80 (246)
Q Consensus        10 ~ka~~~~~~~~------~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~---~~~~p~v~G~e~vG~V~~vG~   80 (246)
                      .|||++.+.++      .++++++|.|.+.+++|+||+.++++|+.|...+.+...   +...+.++|+|++|+|+++|+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~   81 (329)
T cd05288           2 NRQVVLAKRPEGPPPPDDFELVEVPLPELKDGEVLVRTLYLSVDPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEVVESRS   81 (329)
T ss_pred             CcEEEEeccCCCCCCccceeEEeccCCCCCCCeEEEEEEEEecCHHHhhhhccCcccCCCccCCCcccCceEEEEEecCC
Confidence            46777765442      289999999999999999999999999988665544321   112345789999999999996


Q ss_pred             CCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeec-Cc
Q 025895           81 GVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD-VS  159 (246)
Q Consensus        81 ~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~  159 (246)
                      .  ++++||+|+..                                  +                  +|++|+.++. +.
T Consensus        82 ~--~~~~Gd~V~~~----------------------------------~------------------~~~~~~~v~~~~~  107 (329)
T cd05288          82 P--DFKVGDLVSGF----------------------------------L------------------GWQEYAVVDGASG  107 (329)
T ss_pred             C--CCCCCCEEecc----------------------------------c------------------ceEEEEEecchhh
Confidence            4  79999999732                                  1                  6999999999 99


Q ss_pred             eEEcCCCCC--chhhhh-ccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          160 VAKIDPQAP--LDKVCL-LGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       160 ~~~ip~~~~--~~~aa~-l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      ++++|++++  +..++. +++++.++|+++.....+.++++|||+|+ |.+|++++++++.+|+ +|+++++++++.+.+
T Consensus       108 ~~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~-~vi~~~~~~~~~~~~  186 (329)
T cd05288         108 LRKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPGETVVVSAAAGAVGSVVGQIAKLLGA-RVVGIAGSDEKCRWL  186 (329)
T ss_pred             cEECCcccCCCHHHHHHhcccHHHHHHHHHHhccCCCCCCEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            999999985  445555 88899999998877778899999999986 9999999999999999 899999999999999


Q ss_pred             hh-cCCC
Q 025895          236 MS-CVSS  241 (246)
Q Consensus       236 ~~-lg~~  241 (246)
                      ++ +|++
T Consensus       187 ~~~~g~~  193 (329)
T cd05288         187 VEELGFD  193 (329)
T ss_pred             HhhcCCc
Confidence            88 8876

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.90  E-value=2.8e-22  Score=173.56  Aligned_cols=171  Identities=28%  Similarity=0.366  Sum_probs=148.6

Q ss_pred             EEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCC---CCCCCcccccceEEEEEEcCCCCCccCCCCEEEeeCCCCC
Q 025895           23 VIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAEC   99 (246)
Q Consensus        23 ~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~---~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd~V~~~~~~~~   99 (246)
                      ++++.|.|.+.+++|+||+.++++|+.|...+.+...   ....|.++|||++|+|+++|+++.++++||+|+..+... 
T Consensus        15 ~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~-   93 (319)
T cd08267          15 LEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSGVTRFKVGDEVFGRLPPK-   93 (319)
T ss_pred             ccccCCCCCCCCCEEEEEEEEeeCCHHHHHHHcCCCcccccCCCCCcccceeeEEEEEeCCCCCCCCCCCEEEEeccCC-
Confidence            7888999999999999999999999999998877652   123467899999999999999999999999998653210 


Q ss_pred             CCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCchhhhhccccc
Q 025895          100 RECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGV  179 (246)
Q Consensus       100 ~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~l~~~~  179 (246)
                                                 ..                  |+|++|+.++.+.++++|+++++++++.+.+.+
T Consensus        94 ---------------------------~~------------------g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~  128 (319)
T cd08267          94 ---------------------------GG------------------GALAEYVVAPESGLAKKPEGVSFEEAAALPVAG  128 (319)
T ss_pred             ---------------------------CC------------------ceeeEEEEechhheEECCCCCCHHHHHhhhhHH
Confidence                                       12                  289999999999999999999999999999999


Q ss_pred             hhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          180 PTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       180 ~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      .++|+++.....+.++++|+|+|+ |.+|++++++|+.+|+ +|++++.+ ++.+.++++|++
T Consensus       129 ~~a~~~~~~~~~~~~g~~vli~g~~g~~g~~~~~la~~~g~-~v~~~~~~-~~~~~~~~~g~~  189 (319)
T cd08267         129 LTALQALRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGA-HVTGVCST-RNAELVRSLGAD  189 (319)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCH-HHHHHHHHcCCC
Confidence            999998877777999999999998 9999999999999999 88888765 888888888875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1

Probab=99.89  E-value=3.1e-23  Score=153.63  Aligned_cols=108  Identities=37%  Similarity=0.689  Sum_probs=93.2

Q ss_pred             CCeEEEEEeeeecchhhhhhhcCC-CCCCCCCcccccceEEEEEEcCCCCCccCCCCEEEeeCCCCCCCChhhhCCCCCC
Q 025895           34 AGEVRIKILFTALCHTDAYTWSGK-DPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNL  112 (246)
Q Consensus        34 ~~eVlVkv~~~~i~~~D~~~~~~~-~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~  112 (246)
                      |+||+||+++++||++|++++.+. .....+|.++|||++|+|+++|+++++|++||+|++.+...|+.|.+|..+..+.
T Consensus         1 P~eVlVkv~a~gic~~D~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~   80 (109)
T PF08240_consen    1 PGEVLVKVRAAGICGSDLHIREGGPPPPPKFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVSPNIGCGECEYCLSGRPNL   80 (109)
T ss_dssp             TTEEEEEEEEEEE-HHHHHHHTTSSSSTSSSSEES-SEEEEEEEEESTTTTSSGTT-EEEEESEEETSSSHHHHTTTGGG
T ss_pred             CCEEEEEEEEeeeCHHHHHHHhhccccCCCCCcccccceeeeeeeeccccccccccceeeeecccCccCchhhcCCcccc
Confidence            689999999999999999999983 4556889999999999999999999999999999999988899999999999999


Q ss_pred             CCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEc
Q 025895          113 CGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI  163 (246)
Q Consensus       113 c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i  163 (246)
                      |.+...   .|.. .+|                  +|+||+.+|.++++++
T Consensus        81 c~~~~~---~g~~-~~G------------------~~aey~~v~~~~~~~v  109 (109)
T PF08240_consen   81 CPNPEV---LGLG-LDG------------------GFAEYVVVPARNLVPV  109 (109)
T ss_dssp             TTTBEE---TTTS-STC------------------SSBSEEEEEGGGEEEE
T ss_pred             CCCCCE---eEcC-CCC------------------cccCeEEEehHHEEEC
Confidence            987654   3332 444                  9999999999999875

1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....

>cd08251 polyketide_synthase polyketide synthase

Probab=99.89  E-value=6.2e-22  Score=169.88  Aligned_cols=164  Identities=26%  Similarity=0.331  Sum_probs=145.3

Q ss_pred             cCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCCccCCCCEEEeeCCCCCCCChhhhC
Q 025895           29 VAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKS  107 (246)
Q Consensus        29 ~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd~V~~~~~~~~~~c~~c~~  107 (246)
                      .|.+.+++|+||+.++++|+.|+....+.++. ..+|.++|+|++|+|+++|+++.++++||+|+.....          
T Consensus         2 ~p~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~----------   71 (303)
T cd08251           2 VAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGTGE----------   71 (303)
T ss_pred             CCCCCCCEEEEEEEEeecChHHHHHHCCCCCCCCCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEecCC----------
Confidence            46788999999999999999999988776542 3568899999999999999999999999999865320          


Q ss_pred             CCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCchhhhhccccchhhhhhhh
Q 025895          108 GKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW  187 (246)
Q Consensus       108 ~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~  187 (246)
                                         .+|                  +|++|+.++.+.++++|+++++++++.+++.+.++|.++ 
T Consensus        72 -------------------~~g------------------~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l-  113 (303)
T cd08251          72 -------------------SMG------------------GHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAF-  113 (303)
T ss_pred             -------------------CCc------------------ceeeEEEccHHHeEECCCCCCHHHHHHhHHHHHHHHHHH-
Confidence                               123                  899999999999999999999999999999999999976 


Q ss_pred             hhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          188 NTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       188 ~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      ....++++++|+|+|+ |.+|++++++++.+|+ +++++++++++.+.++++|++
T Consensus       114 ~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~  167 (303)
T cd08251         114 ARAGLAKGEHILIQTATGGTGLMAVQLARLKGA-EIYATASSDDKLEYLKQLGVP  167 (303)
T ss_pred             HhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCC
Confidence            5788999999999976 9999999999999999 899999999999999989876

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=99.89  E-value=1.4e-21  Score=168.85  Aligned_cols=181  Identities=34%  Similarity=0.457  Sum_probs=155.3

Q ss_pred             eeeeEeecCCCC--eEEEEeecCCCC-CCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCCcc
Q 025895           10 CKAAVAWEPNKP--LVIEDVQVAPPQ-AGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEV   85 (246)
Q Consensus        10 ~ka~~~~~~~~~--~~~~e~~~p~~~-~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~~~   85 (246)
                      |||+++...+.+  +++.+.+ |.+. +++++||+.++++|+.|...+.+.... ...|.++|||++|+|+.+|+++..+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~   79 (323)
T cd08241           1 MKAVVCKELGGPEDLVLEEVP-PEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKPPLPFVPGSEVAGVVEAVGEGVTGF   79 (323)
T ss_pred             CeEEEEecCCCcceeEEecCC-CCCCCCCeEEEEEEEEecCHHHHHHHcCCCCCCCCCCCcccceeEEEEEEeCCCCCCC
Confidence            688888754433  7777887 7766 499999999999999999988776532 2346789999999999999999899


Q ss_pred             CCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCC
Q 025895           86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP  165 (246)
Q Consensus        86 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~  165 (246)
                      ++||+|+..+.                               .                  |+|++|+.++.+.++++|+
T Consensus        80 ~~G~~V~~~~~-------------------------------~------------------~~~~~~~~~~~~~~~~ip~  110 (323)
T cd08241          80 KVGDRVVALTG-------------------------------Q------------------GGFAEEVVVPAAAVFPLPD  110 (323)
T ss_pred             CCCCEEEEecC-------------------------------C------------------ceeEEEEEcCHHHceeCCC
Confidence            99999986530                               1                  2899999999999999999


Q ss_pred             CCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       166 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      ++++.+++.+.+...++|.++.....+.++++|+|+|+ |.+|++++++++..|+ .|+++++++++.+.++++|++
T Consensus       111 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~  186 (323)
T cd08241         111 GLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAVQLAKALGA-RVIAAASSEEKLALARALGAD  186 (323)
T ss_pred             CCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHcCCc
Confidence            99998888888899999988776788999999999998 9999999999999999 799999999999998888864

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=99.89  E-value=5.3e-22  Score=166.49  Aligned_cols=170  Identities=25%  Similarity=0.310  Sum_probs=141.3

Q ss_pred             eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcC--CCCCccCCCCEEEeeCCCCC
Q 025895           22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVG--EGVTEVQPGDHVIPCYQAEC   99 (246)
Q Consensus        22 ~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG--~~~~~~~~Gd~V~~~~~~~~   99 (246)
                      |+++|.++|+|+++|||||++|.++++.....++.. +.-..|.-+|...+|.++...  |....|++||.|....    
T Consensus        27 F~lee~~vp~p~~GqvLl~~~ylS~DPymRgrm~d~-~SY~~P~~lG~~~~gg~V~~Vv~S~~~~f~~GD~V~~~~----  101 (340)
T COG2130          27 FRLEEVDVPEPGEGQVLLRTLYLSLDPYMRGRMSDA-PSYAPPVELGEVMVGGTVAKVVASNHPGFQPGDIVVGVS----  101 (340)
T ss_pred             ceeEeccCCCCCcCceEEEEEEeccCHHHeecccCC-cccCCCcCCCceeECCeeEEEEecCCCCCCCCCEEEecc----
Confidence            999999999999999999999999999655444333 222457777777666555543  4567799999997431    


Q ss_pred             CCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCc--hhhhhccc
Q 025895          100 RECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL--DKVCLLGC  177 (246)
Q Consensus       100 ~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~--~~aa~l~~  177 (246)
                                                                      +|++|..++.+.+.+++++.-+  .....+.+
T Consensus       102 ------------------------------------------------GWq~y~i~~~~~l~Kvd~~~~pl~~~LgvLGm  133 (340)
T COG2130         102 ------------------------------------------------GWQEYAISDGEGLRKLDPSPAPLSAYLGVLGM  133 (340)
T ss_pred             ------------------------------------------------cceEEEeechhhceecCCCCCCcchHHhhcCC
Confidence                                                            7999999999999999866322  23344788


Q ss_pred             cchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh-cCCC--cccc
Q 025895          178 GVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS-CVSS--SKYH  245 (246)
Q Consensus       178 ~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~-lg~~--~~~~  245 (246)
                      +..|||.+|++..+.++|++|+|.+| |++|..+.|+||..|+ +||.+..+++|.+.+++ +|.|  ++||
T Consensus       134 pG~TAY~gLl~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~-rVVGiaGg~eK~~~l~~~lGfD~~idyk  204 (340)
T COG2130         134 PGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGC-RVVGIAGGAEKCDFLTEELGFDAGIDYK  204 (340)
T ss_pred             chHHHHHHHHHhcCCCCCCEEEEEecccccchHHHHHHHhhCC-eEEEecCCHHHHHHHHHhcCCceeeecC
Confidence            99999999999999999999999987 9999999999999999 99999999999999998 9999  7775

>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.88  E-value=7.7e-21  Score=165.74  Aligned_cols=180  Identities=24%  Similarity=0.323  Sum_probs=149.7

Q ss_pred             eeeEeecCCC--CeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCCccCC
Q 025895           11 KAAVAWEPNK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQP   87 (246)
Q Consensus        11 ka~~~~~~~~--~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~~~~~   87 (246)
                      |++++...+.  .+++++.+.|.+.+++|+||+.++++|+.|...+.+.... +..|.++|||++|+|+.+|+++.++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~   80 (337)
T cd08275           1 RAVVLTGFGGLDKLKVEKEALPEPSSGEVRVRVEACGLNFADLMARQGLYDSAPKPPFVPGFECAGTVEAVGEGVKDFKV   80 (337)
T ss_pred             CeEEEcCCCCccceEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCcceeEEEEEEECCCCcCCCC
Confidence            4566665543  2788888888899999999999999999999988776532 345778999999999999999999999


Q ss_pred             CCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCC
Q 025895           88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA  167 (246)
Q Consensus        88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~  167 (246)
                      ||+|+....                               +                  |+|++|..++.+.++++|+++
T Consensus        81 G~~V~~~~~-------------------------------~------------------~~~~~~~~~~~~~~~~ip~~~  111 (337)
T cd08275          81 GDRVMGLTR-------------------------------F------------------GGYAEVVNVPADQVFPLPDGM  111 (337)
T ss_pred             CCEEEEecC-------------------------------C------------------CeeeeEEEecHHHeEECCCCC
Confidence            999986421                               1                  289999999999999999999


Q ss_pred             CchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHc-CCCeEEEEcCChhHHHHHhhcCCC
Q 025895          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~-G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      ++.+++.+.+.+.++|+++.....++++++|+|+|+ |.+|++++++++.+ +. .++.. ..+++.+.++++|++
T Consensus       112 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~g~~g~~~~~~a~~~~~~-~~~~~-~~~~~~~~~~~~g~~  185 (337)
T cd08275         112 SFEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQLCKTVPNV-TVVGT-ASASKHEALKENGVT  185 (337)
T ss_pred             CHHHHhhhhHHHHHHHHHHHHhhCCCCCCEEEEEcCcchHHHHHHHHHHHccCc-EEEEe-CCHHHHHHHHHcCCc
Confidence            999999998999999998877888999999999998 99999999999999 43 33222 345677888888875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=99.86  E-value=8.1e-21  Score=161.30  Aligned_cols=152  Identities=26%  Similarity=0.242  Sum_probs=137.0

Q ss_pred             CeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCC
Q 025895           35 GEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCG  114 (246)
Q Consensus        35 ~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~  114 (246)
                      +||+||+.++++|+.|+....+..  ..+|.++|||++|+|+++|+++..+++||+|....                   
T Consensus         1 ~~v~i~v~~~~~~~~d~~~~~g~~--~~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~-------------------   59 (293)
T cd05195           1 DEVEVEVKAAGLNFRDVLVALGLL--PGDETPLGLECSGIVTRVGSGVTGLKVGDRVMGLA-------------------   59 (293)
T ss_pred             CceEEEEEEEecCHHHHHHHhCCC--CCCCCccceeeeEEEEeecCCccCCCCCCEEEEEe-------------------
Confidence            589999999999999999887764  24578999999999999999999999999998542                   


Q ss_pred             CccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCchhhhhccccchhhhhhhhhhCCCCC
Q 025895          115 KVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEP  194 (246)
Q Consensus       115 ~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~  194 (246)
                                   .                  |+|++|+.++.+.++++|+++++.+++.++++..++|.++.+...+++
T Consensus        60 -------------~------------------g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  108 (293)
T cd05195          60 -------------P------------------GAFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQK  108 (293)
T ss_pred             -------------c------------------CcccceEEechhheEeCCCCCCHHHHhhchHHHHHHHHHHHHHhccCC
Confidence                         1                  289999999999999999999999999998899999998877788999


Q ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcC
Q 025895          195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCV  239 (246)
Q Consensus       195 ~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg  239 (246)
                      +++|+|+|+ |.+|++++++++.+|+ +++++.+++++.+.++++|
T Consensus       109 g~~vlv~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~  153 (293)
T cd05195         109 GESVLIHAAAGGVGQAAIQLAQHLGA-EVFATVGSEEKREFLRELG  153 (293)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhC
Confidence            999999976 9999999999999999 8999999999999988887

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>smart00829 PKS_ER Enoylreductase

Probab=99.85  E-value=4.4e-20  Score=156.73  Aligned_cols=148  Identities=26%  Similarity=0.306  Sum_probs=133.8

Q ss_pred             EEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccC
Q 025895           39 IKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRG  118 (246)
Q Consensus        39 Vkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~  118 (246)
                      ||+.++++|+.|...+.+.++   .|.++|||++|+|+++|++++.+++||+|....                       
T Consensus         2 i~v~~~~i~~~d~~~~~g~~~---~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~-----------------------   55 (288)
T smart00829        2 VEVRAAGLNFRDVLIALGLLP---GEAVLGGECAGVVTRVGPGVTGLAVGDRVMGLA-----------------------   55 (288)
T ss_pred             eeEEEEecCHHHHHHhcCCCC---CCCCCCceeEEEEEeeCCCCcCCCCCCEEEEEc-----------------------
Confidence            799999999999998877643   357899999999999999999999999998541                       


Q ss_pred             CCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEE
Q 025895          119 ATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIV  198 (246)
Q Consensus       119 ~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~V  198 (246)
                               +                  |+|++|+.++.+.++++|+++++.+++.+.+.+.++|.++.+...+.++++|
T Consensus        56 ---------~------------------g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~v  108 (288)
T smart00829       56 ---------P------------------GSFATYVRTDARLVVPIPDGLSFEEAATVPVVFLTAYYALVDLARLRPGESV  108 (288)
T ss_pred             ---------C------------------CceeeEEEccHHHeEECCCCCCHHHHHhchHHHHHHHHHHHHHhCCCCCCEE
Confidence                     1                  2899999999999999999999999999999999999987677889999999


Q ss_pred             EEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCC
Q 025895          199 AVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVS  240 (246)
Q Consensus       199 lI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~  240 (246)
                      +|+|+ |.+|++++++++.+|+ +|+++++++++++.++++|+
T Consensus       109 lv~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~  150 (288)
T smart00829      109 LIHAAAGGVGQAAIQLAQHLGA-EVFATAGSPEKRDFLRELGI  150 (288)
T ss_pred             EEecCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCC
Confidence            99986 9999999999999999 89999999999999999987

Enoylreductase in Polyketide synthases.

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=99.76  E-value=8.9e-18  Score=143.32  Aligned_cols=124  Identities=34%  Similarity=0.421  Sum_probs=113.0

Q ss_pred             CCCcccccceEEEEEEcCCCCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCccee
Q 025895           62 LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIY  141 (246)
Q Consensus        62 ~~p~v~G~e~vG~V~~vG~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~  141 (246)
                      ++|.++|||++|+|+++|++++++++||+|+...                                              
T Consensus        19 ~~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~----------------------------------------------   52 (277)
T cd08255          19 PLPLPPGYSSVGRVVEVGSGVTGFKPGDRVFCFG----------------------------------------------   52 (277)
T ss_pred             cCCcccCcceeEEEEEeCCCCCCCCCCCEEEecC----------------------------------------------
Confidence            5889999999999999999999999999997431                                              


Q ss_pred             eccCCcceeeeEEeecCceEEcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCe
Q 025895          142 HFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASR  221 (246)
Q Consensus       142 ~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~  221 (246)
                            .|++|+.++.+.++++|+++++.+++.+ +.+.++|+++ ...+++++++++|+|+|.+|++++++|+.+|+.+
T Consensus        53 ------~~~~~~~v~~~~~~~ip~~l~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~  124 (277)
T cd08255          53 ------PHAERVVVPANLLVPLPDGLPPERAALT-ALAATALNGV-RDAEPRLGERVAVVGLGLVGLLAAQLAKAAGARE  124 (277)
T ss_pred             ------CcceEEEcCHHHeeECcCCCCHHHhHHH-HHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Confidence                  5899999999999999999999998888 7889999976 4688999999999988999999999999999943


Q ss_pred             EEEEcCChhHHHHHhhcC
Q 025895          222 VIGIDIDPKKFDRGMSCV  239 (246)
Q Consensus       222 vi~~~~~~~~~~~~~~lg  239 (246)
                      |+++++++++.++++++|
T Consensus       125 vi~~~~~~~~~~~~~~~g  142 (277)
T cd08255         125 VVGVDPDAARRELAEALG  142 (277)
T ss_pred             EEEECCCHHHHHHHHHcC
Confidence            999999999999999998

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]

Probab=99.71  E-value=1.2e-15  Score=128.12  Aligned_cols=183  Identities=23%  Similarity=0.235  Sum_probs=133.1

Q ss_pred             cceeeeEeecCCCC------eEE--EEeec-CCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCccccc----ceEE
Q 025895            8 ITCKAAVAWEPNKP------LVI--EDVQV-APPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGH----EAAG   73 (246)
Q Consensus         8 ~~~ka~~~~~~~~~------~~~--~e~~~-p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~----e~vG   73 (246)
                      .+.|++++...-..      |.+  .+.+. .+++.++|+||.+|.+..|...-.+....+. -..|+.+|-    .++|
T Consensus         2 v~nkqvvLk~y~~g~P~~~d~~~~~~~~el~~~~~s~~vlvknlYLS~DPymR~rM~~~~~~~y~~~~~~G~pi~g~GV~   81 (343)
T KOG1196|consen    2 VTNKQVILKNYVTGFPTESDFEFTTTTVELRVPLGSGEVLVKNLYLSCDPYMRIRMGKPDPSDYAPPYEPGKPIDGFGVA   81 (343)
T ss_pred             ccccEEEEeccCCCCCccccceeeeeeecccCCCCCccEEeEeeeecCCHHHHhhccCCCcccccCcccCCcEecCCceE
Confidence            34566776652211      333  33443 4468999999999999988865544332222 122333332    6799


Q ss_pred             EEEEcCCCCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeE
Q 025895           74 IVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYT  153 (246)
Q Consensus        74 ~V~~vG~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~  153 (246)
                      +|++.  +..++++||.|...                              .                      +|.+|.
T Consensus        82 kVi~S--~~~~~~~GD~v~g~------------------------------~----------------------gWeeys  107 (343)
T KOG1196|consen   82 KVIDS--GHPNYKKGDLVWGI------------------------------V----------------------GWEEYS  107 (343)
T ss_pred             EEEec--CCCCCCcCceEEEe------------------------------c----------------------cceEEE
Confidence            99996  55679999999533                              2                      699999


Q ss_pred             EeecC--ceEEcCC--CCCchhh-hhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcC
Q 025895          154 VVHDV--SVAKIDP--QAPLDKV-CLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI  227 (246)
Q Consensus       154 ~~~~~--~~~~ip~--~~~~~~a-a~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~  227 (246)
                      ++..+  ..++|+.  +.++... ..+.++..|||..+++....++|++|+|-|| |.+|+++.|+|+.+|+ .||+...
T Consensus       108 ii~~~~~~~~ki~~~~~~pLs~ylg~lGm~glTAy~Gf~ei~~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc-~VVGsaG  186 (343)
T KOG1196|consen  108 VITPNDLEHFKIQHPTDVPLSYYLGLLGMPGLTAYAGFYEICSPKKGETVFVSAASGAVGQLVGQFAKLMGC-YVVGSAG  186 (343)
T ss_pred             EecCcchhcccCCCCCccCHhhhhhccCCchhHHHHHHHHhcCCCCCCEEEEeeccchhHHHHHHHHHhcCC-EEEEecC
Confidence            99654  4455543  4444333 3478899999999999999999999999988 9999999999999999 9999999


Q ss_pred             ChhHHHHHhh-cCCC--cccc
Q 025895          228 DPKKFDRGMS-CVSS--SKYH  245 (246)
Q Consensus       228 ~~~~~~~~~~-lg~~--~~~~  245 (246)
                      +++|.++++. +|.|  ++|+
T Consensus       187 S~EKv~ll~~~~G~d~afNYK  207 (343)
T KOG1196|consen  187 SKEKVDLLKTKFGFDDAFNYK  207 (343)
T ss_pred             ChhhhhhhHhccCCccceecc
Confidence            9999998875 7888  6664

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=99.60  E-value=4.8e-15  Score=141.60  Aligned_cols=161  Identities=19%  Similarity=0.205  Sum_probs=138.4

Q ss_pred             eEEEEeecC---CCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCC-------cccccceEEEEEEcCCCCCccCCCCEE
Q 025895           22 LVIEDVQVA---PPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFP-------CILGHEAAGIVESVGEGVTEVQPGDHV   91 (246)
Q Consensus        22 ~~~~e~~~p---~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p-------~v~G~e~vG~V~~vG~~~~~~~~Gd~V   91 (246)
                      +++.|-|..   +..++.=+.-|.|+.||..|+....|+.++...|       +++|-|++||          .+-|.||
T Consensus      1429 lrWies~~~~a~~~~~~~e~CtVYYAplNFRDiMLasGkL~~DAiPG~~a~qdclLGmEFsGR----------d~~GrRv 1498 (2376)
T KOG1202|consen 1429 LRWIESPLRHAQPTCPGLELCTVYYAPLNFRDIMLASGKLSPDAIPGDLASQDCLLGMEFSGR----------DASGRRV 1498 (2376)
T ss_pred             eeeeecchhhcCCCCCCCceeEEEeccccHHHHHHhcCCCCcccCCCccchhhheeceeeccc----------cCCCcEE
Confidence            667776654   2467777899999999999999999988766544       7889999888          4569999


Q ss_pred             EeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCchh
Q 025895           92 IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDK  171 (246)
Q Consensus        92 ~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~  171 (246)
                      +....                               ..                  +.++.+.++.+.+|.+|.+...++
T Consensus      1499 M~mvp-------------------------------Ak------------------sLATt~l~~rd~lWevP~~WTlee 1529 (2376)
T KOG1202|consen 1499 MGMVP-------------------------------AK------------------SLATTVLASRDFLWEVPSKWTLEE 1529 (2376)
T ss_pred             EEeee-------------------------------hh------------------hhhhhhhcchhhhhhCCcccchhh
Confidence            75531                               11                  688888889999999999999999


Q ss_pred             hhhccccchhhhhhhhhhCCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          172 VCLLGCGVPTGLGAVWNTAKVEPGSIVAVF-GLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       172 aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~-Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      |++.++.+.|+|+|+..+.+.++|++|||+ |+|++|++||.+|.++|+ +|+.+..+.+|++.+.+.-+.+
T Consensus      1530 AstVP~VYsTaYYALVvRG~mkkGekiLIHaGsGGVGQAAIaiALa~G~-~VFTTVGSaEKRefL~~rFPqL 1600 (2376)
T KOG1202|consen 1530 ASTVPVVYSTAYYALVVRGQMKKGEKILIHAGSGGVGQAAIAIALAHGC-TVFTTVGSAEKREFLLKRFPQL 1600 (2376)
T ss_pred             cccCceEeeeehhhhhhhccccCCcEEEEecCCCchhHHHHHHHHHcCC-EEEEecCcHHHHHHHHHhchhh
Confidence            999999999999999999999999999999 559999999999999999 9999999999999998766653

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=98.07  E-value=9.8e-06  Score=74.92  Aligned_cols=50  Identities=30%  Similarity=0.311  Sum_probs=47.6

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      ..++++|+|+|+|.+|+++++.|+.+|+ +|+++|.+++|++.++++|+++
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aeslGA~~  211 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESMGAEF  211 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeE
Confidence            5689999999999999999999999999 8999999999999999999983

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=97.60  E-value=2e-06  Score=78.01  Aligned_cols=134  Identities=15%  Similarity=0.149  Sum_probs=86.5

Q ss_pred             cccccceEEEEEEcCCCCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeecc
Q 025895           65 CILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFM  144 (246)
Q Consensus        65 ~v~G~e~vG~V~~vG~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~  144 (246)
                      ..-|.|+++.+.+|++++++     +|+..+.. ||+|++|    ...|.....   .|.. .++               
T Consensus        88 ~~~~~~a~~hl~~Va~GldS-----~V~GE~qI-~gQvk~a----~~~a~~~~~---~g~~-l~~---------------  138 (417)
T TIGR01035        88 ILTGESAVEHLFRVASGLDS-----MVVGETQI-LGQVKNA----YKVAQEEKT---VGKV-LER---------------  138 (417)
T ss_pred             hcCchHHHHHHHHHHhhhhh-----hhcCChHH-HHHHHHH----HHHHHHcCC---chHH-HHH---------------
Confidence            34688999999999999876     44444544 8888888    333433222   1211 233               


Q ss_pred             CCcceeeeEEeecCceEE---c-CCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025895          145 GTSTFSQYTVVHDVSVAK---I-DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGAS  220 (246)
Q Consensus       145 ~~g~~~~~~~~~~~~~~~---i-p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~  220 (246)
                         .|++++.++. .+..   | +..+|...++.         ....+..+..++++|+|+|+|.+|..+++.++..|+.
T Consensus       139 ---lf~~a~~~~k-~vr~~t~i~~~~vSv~~~Av---------~la~~~~~~l~~~~VlViGaG~iG~~~a~~L~~~G~~  205 (417)
T TIGR01035       139 ---LFQKAFSVGK-RVRTETDISAGAVSISSAAV---------ELAERIFGSLKGKKALLIGAGEMGELVAKHLLRKGVG  205 (417)
T ss_pred             ---HHHHHHHHhh-hhhhhcCCCCCCcCHHHHHH---------HHHHHHhCCccCCEEEEECChHHHHHHHHHHHHCCCC
Confidence               7888887765 3222   2 22233222221         1012333446679999999999999999999999976


Q ss_pred             eEEEEcCChhHHH-HHhhcCC
Q 025895          221 RVIGIDIDPKKFD-RGMSCVS  240 (246)
Q Consensus       221 ~vi~~~~~~~~~~-~~~~lg~  240 (246)
                      +|++++++.++.+ .++++|.
T Consensus       206 ~V~v~~rs~~ra~~la~~~g~  226 (417)
T TIGR01035       206 KILIANRTYERAEDLAKELGG  226 (417)
T ss_pred             EEEEEeCCHHHHHHHHHHcCC
Confidence            9999999988754 5566664

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=97.58  E-value=0.00024  Score=64.23  Aligned_cols=57  Identities=25%  Similarity=0.331  Sum_probs=49.5

Q ss_pred             hhhhhhCC-CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          184 GAVWNTAK-VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       184 ~~l~~~~~-~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      .++.+..+ ..+|++|+|+|.|.+|+.+++.++.+|+ +|++++.++.|++.++.+|++
T Consensus       190 ~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~~G~~  247 (413)
T cd00401         190 DGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAMEGYE  247 (413)
T ss_pred             HHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHhcCCE
Confidence            33444434 4689999999999999999999999999 899999999999999999985

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=97.30  E-value=0.00062  Score=63.03  Aligned_cols=49  Identities=31%  Similarity=0.342  Sum_probs=45.7

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      .++++|+|+|+|.+|+.+++.++.+|+ .|++++.++++++.++++|++.
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~lGa~~  210 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMGAEF  210 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeE
Confidence            467899999999999999999999999 7999999999999999999874

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=97.15  E-value=0.0004  Score=60.68  Aligned_cols=83  Identities=18%  Similarity=0.135  Sum_probs=62.9

Q ss_pred             CceEEcCCCCCchhhhhccccchhhhhhhhhhCC---CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHH-H
Q 025895          158 VSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK---VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF-D  233 (246)
Q Consensus       158 ~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~---~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~-~  233 (246)
                      +.++++|+.+..+.++... +...++.++.....   --++.+|+|+|+|.+|..+++.++..|...|++++++++|. +
T Consensus       139 ~~a~~~~k~vr~et~i~~~-~~sv~~~Av~~a~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~  217 (311)
T cd05213         139 QKAIKVGKRVRTETGISRG-AVSISSAAVELAEKIFGNLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEE  217 (311)
T ss_pred             HHHHHHHHHHhhhcCCCCC-CcCHHHHHHHHHHHHhCCccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence            5677888888888777654 55556665432222   14689999999999999999999998877899999998875 5


Q ss_pred             HHhhcCCC
Q 025895          234 RGMSCVSS  241 (246)
Q Consensus       234 ~~~~lg~~  241 (246)
                      ++.++|+.
T Consensus       218 la~~~g~~  225 (311)
T cd05213         218 LAKELGGN  225 (311)
T ss_pred             HHHHcCCe
Confidence            66777764

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=96.98  E-value=0.0038  Score=52.76  Aligned_cols=82  Identities=26%  Similarity=0.367  Sum_probs=54.2

Q ss_pred             ceeeeEEeecCceEEcCCCCCchhhhhccccchhhhhhhhhh-CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEc
Q 025895          148 TFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT-AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID  226 (246)
Q Consensus       148 ~~~~~~~~~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~-~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~  226 (246)
                      +|.+|.. +...++.+++++++..+.--    .|.. ++... ....++++||-+|.|. |.+++.+++ .|+.+|+++|
T Consensus        78 ~~~~~~~-~~~~~i~i~p~~afgtg~h~----tt~~-~l~~l~~~~~~~~~VLDiGcGs-G~l~i~~~~-~g~~~v~giD  149 (250)
T PRK00517         78 SWEDPPD-PDEINIELDPGMAFGTGTHP----TTRL-CLEALEKLVLPGKTVLDVGCGS-GILAIAAAK-LGAKKVLAVD  149 (250)
T ss_pred             CCcCCCC-CCeEEEEECCCCccCCCCCH----HHHH-HHHHHHhhcCCCCEEEEeCCcH-HHHHHHHHH-cCCCeEEEEE
Confidence            3555544 66778888888876654321    1111 11111 1256789999999986 888776555 6775799999


Q ss_pred             CChhHHHHHhh
Q 025895          227 IDPKKFDRGMS  237 (246)
Q Consensus       227 ~~~~~~~~~~~  237 (246)
                      .++..++.+++
T Consensus       150 is~~~l~~A~~  160 (250)
T PRK00517        150 IDPQAVEAARE  160 (250)
T ss_pred             CCHHHHHHHHH
Confidence            99998877654

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=96.95  E-value=0.0034  Score=47.92  Aligned_cols=44  Identities=27%  Similarity=0.340  Sum_probs=39.3

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      .+++++|+|+|++|.+++..+...|+++|+++.|+.+|.+.+.+
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~   54 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAE   54 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHH
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHH
Confidence            56899999999999999999999999889999999998776543

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=96.85  E-value=0.0039  Score=56.67  Aligned_cols=58  Identities=29%  Similarity=0.357  Sum_probs=47.0

Q ss_pred             hhhhhhhCCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          183 LGAVWNTAKVE-PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       183 ~~~l~~~~~~~-~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      |.++.+..++. .|++|+|+|.|.+|..+++.++.+|+ +|++++.++.|...+...|++
T Consensus       199 ~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~~~G~~  257 (425)
T PRK05476        199 LDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAAMDGFR  257 (425)
T ss_pred             HHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHHhcCCE
Confidence            44444443444 89999999999999999999999999 899999999887776666654

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=96.83  E-value=0.0023  Score=60.42  Aligned_cols=52  Identities=23%  Similarity=0.274  Sum_probs=44.1

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC---------------------hhHHHHHhhcCCCcc
Q 025895          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID---------------------PKKFDRGMSCVSSSK  243 (246)
Q Consensus       191 ~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~---------------------~~~~~~~~~lg~~~~  243 (246)
                      ..+.+++|+|+|+|+.|+.+++.++..|+ +|++++..                     +++++.++++|+++.
T Consensus       133 ~~~~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~  205 (564)
T PRK12771        133 APDTGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVR  205 (564)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEE
Confidence            46789999999999999999999999999 79889743                     456778888998744

>TIGR00936 ahcY adenosylhomocysteinase

Probab=96.69  E-value=0.0062  Score=55.03  Aligned_cols=49  Identities=31%  Similarity=0.349  Sum_probs=43.4

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      ...|++|+|+|.|.+|+.+++.++.+|+ +|++++.++.|...++..|+.
T Consensus       192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~~~A~~~G~~  240 (406)
T TIGR00936       192 LIAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRALEAAMDGFR  240 (406)
T ss_pred             CCCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhHHHHHhcCCE
Confidence            3689999999999999999999999999 899999998887777777764

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.67  E-value=0.0089  Score=51.88  Aligned_cols=47  Identities=32%  Similarity=0.316  Sum_probs=43.2

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      .+++++|+|.|.+|+.+++.++.+|+ +|+++++++++++.++++|+.
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~~~~G~~  197 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARITEMGLS  197 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCe
Confidence            57899999999999999999999999 999999999988888888765

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=96.43  E-value=0.0046  Score=56.37  Aligned_cols=136  Identities=18%  Similarity=0.152  Sum_probs=80.8

Q ss_pred             cccccceEEEEEEcCCCCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeecc
Q 025895           65 CILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFM  144 (246)
Q Consensus        65 ~v~G~e~vG~V~~vG~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~  144 (246)
                      ..-|||+++.+.+|+++.++.-+|+.-+      |++|+..    ...|.....   .|.. .++               
T Consensus        90 ~~~g~ea~~hl~~V~~GldS~V~GE~qI------lgQvk~a----~~~a~~~g~---~g~~-l~~---------------  140 (423)
T PRK00045         90 VHEGEEAVRHLFRVASGLDSMVLGEPQI------LGQVKDA----YALAQEAGT---VGTI-LNR---------------  140 (423)
T ss_pred             hcCCHHHHHHHHHHHhhhhhhhcCChHH------HHHHHHH----HHHHHHcCC---chHH-HHH---------------
Confidence            3469999999999999988765565433      3333321    111211110   0100 111               


Q ss_pred             CCcceeeeEEeecCceEEcCCCCCchhhhhccccchhhhhhhhhhC---CCCCCCEEEEECCCHHHHHHHHHHHHcCCCe
Q 025895          145 GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTA---KVEPGSIVAVFGLGTVGLAVAEGAKAAGASR  221 (246)
Q Consensus       145 ~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~---~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~  221 (246)
                         .|++.+.+        |+.+..+.+.. ..+...++.++....   +-.++++|+|+|+|.+|.++++.++..|+.+
T Consensus       141 ---lf~~a~~~--------~k~v~~~t~i~-~~~~Sv~~~Av~~a~~~~~~~~~~~vlViGaG~iG~~~a~~L~~~G~~~  208 (423)
T PRK00045        141 ---LFQKAFSV--------AKRVRTETGIG-AGAVSVASAAVELAKQIFGDLSGKKVLVIGAGEMGELVAKHLAEKGVRK  208 (423)
T ss_pred             ---HHHHHHHH--------HhhHhhhcCCC-CCCcCHHHHHHHHHHHhhCCccCCEEEEECchHHHHHHHHHHHHCCCCe
Confidence               45444333        33333222222 123444555542221   2256789999999999999999999999878


Q ss_pred             EEEEcCChhHHH-HHhhcCCC
Q 025895          222 VIGIDIDPKKFD-RGMSCVSS  241 (246)
Q Consensus       222 vi~~~~~~~~~~-~~~~lg~~  241 (246)
                      |++++++.++.+ ++.++|.+
T Consensus       209 V~v~~r~~~ra~~la~~~g~~  229 (423)
T PRK00045        209 ITVANRTLERAEELAEEFGGE  229 (423)
T ss_pred             EEEEeCCHHHHHHHHHHcCCc
Confidence            999999988865 66667643

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=96.40  E-value=0.012  Score=46.61  Aligned_cols=45  Identities=36%  Similarity=0.353  Sum_probs=39.7

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      .+|+|+|+|.+|+.|+.+++.+|+ +++..+...++++....+++.
T Consensus        21 ~~vvv~G~G~vg~gA~~~~~~lGa-~v~~~d~~~~~~~~~~~~~~~   65 (168)
T PF01262_consen   21 AKVVVTGAGRVGQGAAEIAKGLGA-EVVVPDERPERLRQLESLGAY   65 (168)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHTT--EEEEEESSHHHHHHHHHTTTE
T ss_pred             eEEEEECCCHHHHHHHHHHhHCCC-EEEeccCCHHHHHhhhcccCc
Confidence            789999999999999999999999 999999999998888877765

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PLN02494 adenosylhomocysteinase

Probab=96.33  E-value=0.013  Score=53.62  Aligned_cols=57  Identities=32%  Similarity=0.404  Sum_probs=46.2

Q ss_pred             hhhhhhCCC-CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          184 GAVWNTAKV-EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       184 ~~l~~~~~~-~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      .++.+..++ -.|++|+|+|.|.+|..+++.++.+|+ +|++++.++.+...+...|+.
T Consensus       242 d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~~~G~~  299 (477)
T PLN02494        242 DGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQALMEGYQ  299 (477)
T ss_pred             HHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHHhcCCe
Confidence            334444443 678999999999999999999999999 899999998887677666664

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.06  E-value=0.017  Score=53.65  Aligned_cols=50  Identities=30%  Similarity=0.306  Sum_probs=42.9

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       191 ~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      .+.++++|+|+|.|.+|++++.+++..|+ +|+++|.++++.+.++++|..
T Consensus         8 ~~~~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~~~~~~~~l~~~g~~   57 (488)
T PRK03369          8 PLLPGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDDDPDALRPHAERGVA   57 (488)
T ss_pred             cccCCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHhCCCE
Confidence            35578899999999999999999999999 899999887777767777764

>TIGR00518 alaDH alanine dehydrogenase

Probab=95.96  E-value=0.02  Score=51.25  Aligned_cols=46  Identities=26%  Similarity=0.271  Sum_probs=39.0

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh-cCC
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS-CVS  240 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~-lg~  240 (246)
                      ++.+|+|+|+|.+|+.+++.++.+|+ +|+++++++++++.+.. ++.
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~g~  212 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEFGG  212 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcCc
Confidence            34569999999999999999999999 89999999988876653 444

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PF13823 ADH_N_assoc: Alcohol dehydrogenase GroES-associated; PDB: 2DPH_B

Probab=95.92  E-value=0.0082  Score=31.09  Aligned_cols=22  Identities=27%  Similarity=0.303  Sum_probs=16.1

Q ss_pred             eeeeEeecCCCCeEEEEeecCCC
Q 025895           10 CKAAVAWEPNKPLVIEDVQVAPP   32 (246)
Q Consensus        10 ~ka~~~~~~~~~~~~~e~~~p~~   32 (246)
                      |||++++++++ ++++++|.|.+
T Consensus         1 MkAv~y~G~~~-v~ve~VpdP~I   22 (23)
T PF13823_consen    1 MKAVVYHGPKD-VRVEEVPDPKI   22 (23)
T ss_dssp             -EEEEEEETTE-EEEEEE----S
T ss_pred             CcceEEeCCCc-eEEEECCCccc
Confidence            89999999999 99999999875

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=95.73  E-value=0.032  Score=47.58  Aligned_cols=49  Identities=29%  Similarity=0.572  Sum_probs=41.1

Q ss_pred             hCCCCCCCEEEEECCCHHHHHHHHHHHHcCCC-eEEEEcCChhHHHHHhhc
Q 025895          189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGAS-RVIGIDIDPKKFDRGMSC  238 (246)
Q Consensus       189 ~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~-~vi~~~~~~~~~~~~~~l  238 (246)
                      ...++++++||.+|.|. |..++++++..|.. +|+++|.+++.++.+++.
T Consensus        72 ~~~~~~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~  121 (272)
T PRK11873         72 LAELKPGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARAN  121 (272)
T ss_pred             hccCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHH
Confidence            35688999999999977 88888888887762 699999999999888763

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=95.60  E-value=0.039  Score=47.71  Aligned_cols=46  Identities=30%  Similarity=0.332  Sum_probs=40.7

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCC
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVS  240 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~  240 (246)
                      .+++++|+|.|.+|...+..++.+|+ +|+++++++++.+.+.++|.
T Consensus       150 ~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R~~~~~~~~~~~g~  195 (287)
T TIGR02853       150 HGSNVMVLGFGRTGMTIARTFSALGA-RVFVGARSSADLARITEMGL  195 (287)
T ss_pred             CCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCC
Confidence            46899999999999999999999999 99999999988777766664

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=95.53  E-value=0.06  Score=46.43  Aligned_cols=43  Identities=28%  Similarity=0.333  Sum_probs=37.8

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~  236 (246)
                      .+++|+|+|+|+.|.+++..+...|+.+|++++++.+|.+.+.
T Consensus       126 ~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la  168 (284)
T PRK12549        126 SLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALA  168 (284)
T ss_pred             cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence            4578999999999999999999999989999999998876553

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=95.49  E-value=0.066  Score=45.89  Aligned_cols=46  Identities=26%  Similarity=0.233  Sum_probs=39.0

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       191 ~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~  236 (246)
                      ....+++++|+|+|+.+.+++..+..+|+.+|+++.|+++|.+.+.
T Consensus       118 ~~~~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la  163 (272)
T PRK12550        118 QVPPDLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALA  163 (272)
T ss_pred             CCCCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence            3444568999999999999999999999988999999998877554

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=95.47  E-value=0.046  Score=47.09  Aligned_cols=44  Identities=25%  Similarity=0.317  Sum_probs=39.8

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      .+++++|+|+|+.+.+++..++..|+.+|+++.|+.+|.+.+.+
T Consensus       125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~  168 (283)
T COG0169         125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELAD  168 (283)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence            57899999999999999999999998899999999998776654

>PRK08324 short chain dehydrogenase; Validated

Probab=95.46  E-value=0.035  Score=53.74  Aligned_cols=77  Identities=23%  Similarity=0.292  Sum_probs=54.2

Q ss_pred             ceeeeEEeecCceEEcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEc
Q 025895          148 TFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID  226 (246)
Q Consensus       148 ~~~~~~~~~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~  226 (246)
                      ++++|..+|...++.+ +..+.+++.....          ......+++++||+|+ |++|...++.+...|+ +|++++
T Consensus       386 ~~~~~~~l~~~~~f~i-~~~~~e~a~l~~~----------~~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~  453 (681)
T PRK08324        386 AVGRYEPLSEQEAFDI-EYWSLEQAKLQRM----------PKPKPLAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLAD  453 (681)
T ss_pred             hcCCccCCChhhhcce-eeehhhhhhhhcC----------CCCcCCCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEe
Confidence            4667777776666666 5555555542110          0122336789999997 9999999999999999 899999


Q ss_pred             CChhHHHHHh
Q 025895          227 IDPKKFDRGM  236 (246)
Q Consensus       227 ~~~~~~~~~~  236 (246)
                      +++++.+.+.
T Consensus       454 r~~~~~~~~~  463 (681)
T PRK08324        454 LDEEAAEAAA  463 (681)
T ss_pred             CCHHHHHHHH
Confidence            9988766543

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=95.38  E-value=0.078  Score=48.78  Aligned_cols=49  Identities=31%  Similarity=0.364  Sum_probs=40.8

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      .-.|++|+|+|.|.+|...++.++.+|+ +|+++++++.+...+...|+.
T Consensus       251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp~~a~~A~~~G~~  299 (476)
T PTZ00075        251 MIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDPICALQAAMEGYQ  299 (476)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhHHHHHhcCce
Confidence            4578999999999999999999999999 899998887776555555553

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=95.33  E-value=0.051  Score=46.81  Aligned_cols=43  Identities=23%  Similarity=0.298  Sum_probs=37.9

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~  236 (246)
                      .+++++|+|+|+.+.+++..+..+|+++|+++.|+.+|.+.+.
T Consensus       124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La  166 (282)
T TIGR01809       124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLV  166 (282)
T ss_pred             CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence            4678999999999999999999999989999999988876553

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=95.27  E-value=0.053  Score=43.32  Aligned_cols=46  Identities=39%  Similarity=0.500  Sum_probs=38.4

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcC
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCV  239 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg  239 (246)
                      -.+.+|.|+|.|.+|...++.++.+|+ +|++++++....+...+.+
T Consensus        34 l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~~~~~~~~   79 (178)
T PF02826_consen   34 LRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPEEGADEFG   79 (178)
T ss_dssp             STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHHHHHHTT
T ss_pred             cCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChhhhccccc
Confidence            457999999999999999999999999 9999999988766444443

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=95.21  E-value=0.072  Score=43.50  Aligned_cols=47  Identities=36%  Similarity=0.461  Sum_probs=40.1

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhc-CC
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSC-VS  240 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~l-g~  240 (246)
                      -.+.+++|+|.|.+|..+++.+...|+ +|+++++++++.+.+++. |+
T Consensus        26 l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~~~~~~~~~~~~g~   73 (200)
T cd01075          26 LEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADINEEAVARAAELFGA   73 (200)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHcCC
Confidence            356899999999999999999999999 999999999887766543 54

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=95.14  E-value=0.068  Score=45.90  Aligned_cols=44  Identities=14%  Similarity=0.153  Sum_probs=38.0

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~  236 (246)
                      ..+++++|+|+|++|.+++..+...|+.+|+++.++.++.+.+.
T Consensus       121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~  164 (278)
T PRK00258        121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELA  164 (278)
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence            35678999999999999999999999669999999998876554

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=95.06  E-value=0.1  Score=44.98  Aligned_cols=43  Identities=26%  Similarity=0.234  Sum_probs=37.2

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~  236 (246)
                      .+++++|+|+|+.+.+++..+...|+.+++++.++.+|.+.+.
T Consensus       126 ~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La  168 (283)
T PRK14027        126 KLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALA  168 (283)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHH
Confidence            4678999999999999988888899989999999988866554

>PRK06949 short chain dehydrogenase; Provisional

Probab=95.01  E-value=0.078  Score=44.25  Aligned_cols=42  Identities=21%  Similarity=0.246  Sum_probs=36.1

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       193 ~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      ..+++++|+|+ |.+|...+..+...|+ +|+++++++++++.+
T Consensus         7 ~~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~   49 (258)
T PRK06949          7 LEGKVALVTGASSGLGARFAQVLAQAGA-KVVLASRRVERLKEL   49 (258)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            44689999998 9999999999999999 899999998876544

>PRK04148 hypothetical protein; Provisional

Probab=94.96  E-value=0.081  Score=40.33  Aligned_cols=48  Identities=25%  Similarity=0.316  Sum_probs=38.4

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      ...+.+++++|.| .|...+..+..+|+ .|+++|.+++..+.+++.+.+
T Consensus        14 ~~~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~~~   61 (134)
T PRK04148         14 KGKNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLGLN   61 (134)
T ss_pred             cccCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhCCe
Confidence            3456789999999 88755555557898 999999999999988877654

>PRK05872 short chain dehydrogenase; Provisional

Probab=94.85  E-value=0.087  Score=45.40  Aligned_cols=45  Identities=22%  Similarity=0.333  Sum_probs=37.5

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-hhcC
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG-MSCV  239 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~-~~lg  239 (246)
                      .++++||+|+ |++|...++.+...|+ +|+++++++++++.+ ++++
T Consensus         8 ~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~   54 (296)
T PRK05872          8 AGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELG   54 (296)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc
Confidence            4689999998 9999999999999999 899999998877654 3344

>PRK07814 short chain dehydrogenase; Provisional

Probab=94.76  E-value=0.096  Score=44.12  Aligned_cols=41  Identities=24%  Similarity=0.259  Sum_probs=35.1

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      +++++||+|+ |++|...++.+...|+ +|+.+++++++.+.+
T Consensus         9 ~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~   50 (263)
T PRK07814          9 DDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAARTESQLDEV   50 (263)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4688999998 8999999998888999 999999988776543

>PRK12829 short chain dehydrogenase; Provisional

Probab=94.66  E-value=0.1  Score=43.64  Aligned_cols=45  Identities=31%  Similarity=0.289  Sum_probs=37.6

Q ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       192 ~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      .-++.++||+|+ |.+|...+..+...|+ +|+++++++++.+.+.+
T Consensus         8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~   53 (264)
T PRK12829          8 PLDGLRVLVTGGASGIGRAIAEAFAEAGA-RVHVCDVSEAALAATAA   53 (264)
T ss_pred             ccCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            346789999998 9999999999999999 89999998876665543

>PRK05867 short chain dehydrogenase; Provisional

Probab=94.51  E-value=0.12  Score=43.14  Aligned_cols=41  Identities=22%  Similarity=0.177  Sum_probs=35.2

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .++++||+|+ +++|...+..+...|+ +|+.+++++++.+.+
T Consensus         8 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   49 (253)
T PRK05867          8 HGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKL   49 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHH
Confidence            4688999998 8999999999989999 899999988776544

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=94.51  E-value=0.12  Score=48.75  Aligned_cols=47  Identities=17%  Similarity=0.127  Sum_probs=40.0

Q ss_pred             hhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          188 NTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       188 ~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      ...+.+.+++|||+|+ |.+|...++.+...|+ +|++++++.++.+.+
T Consensus        73 ~~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~ekl~~l  120 (576)
T PLN03209         73 KELDTKDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSAQRAESL  120 (576)
T ss_pred             cccccCCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH
Confidence            3556778899999998 9999999999988999 899999998887543

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=94.46  E-value=0.17  Score=43.65  Aligned_cols=36  Identities=22%  Similarity=0.339  Sum_probs=31.6

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      .+++++|+|+|++|.+++..+...|+++|+++.+++
T Consensus       125 ~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        125 KGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            467899999999999988888889996799999986

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=94.46  E-value=0.13  Score=43.03  Aligned_cols=40  Identities=40%  Similarity=0.478  Sum_probs=34.1

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR  234 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~  234 (246)
                      .++++||+|+ |.+|...++.+...|+ +|+.+++++++.+.
T Consensus         9 ~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~   49 (255)
T PRK07523          9 TGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGRDPAKLAA   49 (255)
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHH
Confidence            4689999988 9999999988888899 89999998876543

>PRK07060 short chain dehydrogenase; Provisional

Probab=94.44  E-value=0.13  Score=42.51  Aligned_cols=42  Identities=31%  Similarity=0.375  Sum_probs=35.9

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~  236 (246)
                      ++++++|+|+ |.+|...++.+...|+ +|+++++++++.+.+.
T Consensus         8 ~~~~~lItGa~g~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~   50 (245)
T PRK07060          8 SGKSVLVTGASSGIGRACAVALAQRGA-RVVAAARNAAALDRLA   50 (245)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            4578999998 8999999999999999 8999999887765543

>PLN02780 ketoreductase/ oxidoreductase

Probab=94.40  E-value=0.11  Score=45.46  Aligned_cols=41  Identities=22%  Similarity=0.241  Sum_probs=35.2

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .|++++|+|+ +++|...+..+...|+ +|+.+++++++++.+
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~~~l~~~   93 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNPDKLKDV   93 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCHHHHHHH
Confidence            5789999998 8999988877777899 899999999887654

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=94.40  E-value=0.17  Score=43.79  Aligned_cols=37  Identities=14%  Similarity=0.262  Sum_probs=31.0

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      .+++++|+|+|+.+.+++..+...|+++++++.|+++
T Consensus       123 ~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~  159 (288)
T PRK12749        123 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE  159 (288)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence            5578999999999988777677789989999999853

>PRK05866 short chain dehydrogenase; Provisional

Probab=94.39  E-value=0.13  Score=44.36  Aligned_cols=40  Identities=25%  Similarity=0.315  Sum_probs=34.4

Q ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       195 ~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      ++++||+|+ |++|...++.+...|+ +|+++++++++++.+
T Consensus        40 ~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~~~l~~~   80 (293)
T PRK05866         40 GKRILLTGASSGIGEAAAEQFARRGA-TVVAVARREDLLDAV   80 (293)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            478999998 9999999888888899 999999998876544

>PRK07576 short chain dehydrogenase; Provisional

Probab=94.36  E-value=0.14  Score=43.29  Aligned_cols=39  Identities=31%  Similarity=0.368  Sum_probs=34.0

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~  233 (246)
                      +++++||+|+ |++|...++.+...|+ +|+.+++++++++
T Consensus         8 ~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~   47 (264)
T PRK07576          8 AGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRSQEKVD   47 (264)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            5689999998 8999999998889999 8999999887654

>PRK07831 short chain dehydrogenase; Provisional

Probab=94.30  E-value=0.14  Score=43.03  Aligned_cols=43  Identities=33%  Similarity=0.456  Sum_probs=35.8

Q ss_pred             CCCCCEEEEECC-C-HHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          192 VEPGSIVAVFGL-G-TVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       192 ~~~~~~VlI~Ga-g-~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      +..++++||+|+ | ++|...++.+...|+ +|+++++++++++..
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~   58 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGA-RVVISDIHERRLGET   58 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            445689999987 6 799999999999999 899999888776544

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=94.26  E-value=0.13  Score=47.61  Aligned_cols=49  Identities=31%  Similarity=0.355  Sum_probs=40.3

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh---------------------hHHHHHhhcCCCc
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP---------------------KKFDRGMSCVSSS  242 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~---------------------~~~~~~~~lg~~~  242 (246)
                      +.+++|+|+|+|+.|+.++..++..|+ .|++++..+                     ...+.++++|.++
T Consensus       139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~-~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~  208 (467)
T TIGR01318       139 PTGKRVAVIGAGPAGLACADILARAGV-QVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEF  208 (467)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEE
Confidence            367899999999999999999999999 788887664                     2456778888764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=94.19  E-value=0.16  Score=42.56  Aligned_cols=41  Identities=29%  Similarity=0.397  Sum_probs=34.9

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .++++||+|+ |.+|...++.+...|+ +|+.++++.++++.+
T Consensus        11 ~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~   52 (259)
T PRK08213         11 SGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSARKAEELEEA   52 (259)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            3578999988 9999999988888999 899999988776544

>PRK05854 short chain dehydrogenase; Provisional

Probab=94.13  E-value=0.15  Score=44.34  Aligned_cols=41  Identities=32%  Similarity=0.296  Sum_probs=34.4

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .+++++|+|+ +++|...+..+...|+ +|+.+.+++++.+.+
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~   54 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAA   54 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            3578999998 8999998888888999 899999988776543

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=94.06  E-value=0.12  Score=49.79  Aligned_cols=36  Identities=33%  Similarity=0.455  Sum_probs=32.1

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      ..+++|+|+|+|+.|+.++..+..+|+ +|++++..+
T Consensus       325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~-~V~V~E~~~  360 (654)
T PRK12769        325 KSDKRVAIIGAGPAGLACADVLARNGV-AVTVYDRHP  360 (654)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence            357899999999999999999999999 899998754

>PRK06196 oxidoreductase; Provisional

Probab=94.03  E-value=0.16  Score=44.09  Aligned_cols=41  Identities=27%  Similarity=0.293  Sum_probs=34.6

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .++++||+|+ |++|...+..+...|+ +|+++++++++.+.+
T Consensus        25 ~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R~~~~~~~~   66 (315)
T PRK06196         25 SGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPARRPDVAREA   66 (315)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4578999998 8999998888888999 899999998776543

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=94.01  E-value=0.34  Score=37.21  Aligned_cols=47  Identities=21%  Similarity=0.196  Sum_probs=37.1

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-hhcC
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG-MSCV  239 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~-~~lg  239 (246)
                      ..+.+++|+|.|.+|...++.+...|...|++++++.++.+.+ ++++
T Consensus        17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~   64 (155)
T cd01065          17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFG   64 (155)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHh
Confidence            4467899999999999999888888744899999998876653 3444

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=93.99  E-value=0.17  Score=42.03  Aligned_cols=42  Identities=24%  Similarity=0.266  Sum_probs=35.4

Q ss_pred             CCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 025895          191 KVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (246)
Q Consensus       191 ~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~  233 (246)
                      ...+++++||+|+ |.+|...++.+...|+ +|++++++.++.+
T Consensus         8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~~~~~~   50 (247)
T PRK08945          8 DLLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRTEEKLE   50 (247)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCCHHHHH
Confidence            3557889999988 9999998888888899 8999999887654

>PRK06841 short chain dehydrogenase; Provisional

Probab=93.97  E-value=0.18  Score=42.02  Aligned_cols=43  Identities=30%  Similarity=0.323  Sum_probs=35.3

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      +++++||+|+ |.+|...++.+...|+ +|+.++++++..+...+
T Consensus        14 ~~k~vlItGas~~IG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~   57 (255)
T PRK06841         14 SGKVAVVTGGASGIGHAIAELFAAKGA-RVALLDRSEDVAEVAAQ   57 (255)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            4579999998 9999998888888999 89999998776554444

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=93.86  E-value=0.2  Score=41.80  Aligned_cols=40  Identities=23%  Similarity=0.372  Sum_probs=34.1

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR  234 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~  234 (246)
                      ++++++|+|+ |.+|...+..+...|+ +|+.+++++++++.
T Consensus        10 ~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~   50 (256)
T PRK06124         10 AGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEA   50 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHH
Confidence            4689999988 8999998888888899 89999998876543

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=93.83  E-value=0.14  Score=49.27  Aligned_cols=49  Identities=27%  Similarity=0.249  Sum_probs=40.9

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh---------------------HHHHHhhcCCCcc
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK---------------------KFDRGMSCVSSSK  243 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~---------------------~~~~~~~lg~~~~  243 (246)
                      .+++|+|+|+|+.|+.++..++..|+ +|++++..+.                     +.++++++|.++.
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~  378 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFH  378 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEE
Confidence            47999999999999999999999999 8998987763                     4567777887643

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=93.79  E-value=0.12  Score=42.90  Aligned_cols=46  Identities=24%  Similarity=0.355  Sum_probs=40.0

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       191 ~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      +..+-..|-|+|+|.+|.-.+|++...|+ .|+.++.+++.++++++
T Consensus         7 ~~~~~~~V~ivGaG~MGSGIAQv~a~sg~-~V~l~d~~~~aL~~A~~   52 (298)
T KOG2304|consen    7 NMAEIKNVAIVGAGQMGSGIAQVAATSGL-NVWLVDANEDALSRATK   52 (298)
T ss_pred             ccccccceEEEcccccchhHHHHHHhcCC-ceEEecCCHHHHHHHHH
Confidence            33444679999999999999999999999 99999999998887754

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=93.73  E-value=0.21  Score=41.60  Aligned_cols=40  Identities=25%  Similarity=0.394  Sum_probs=34.0

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR  234 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~  234 (246)
                      .++++||+|+ |++|...+..+...|+ +|+.+++++++++.
T Consensus         8 ~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~~~~~~~   48 (254)
T PRK08085          8 AGKNILITGSAQGIGFLLATGLAEYGA-EIIINDITAERAEL   48 (254)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCHHHHHH
Confidence            3578999988 8999999988888999 89999998876543

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=93.70  E-value=0.29  Score=41.72  Aligned_cols=42  Identities=26%  Similarity=0.200  Sum_probs=35.5

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      ..+++++|+|+|++|.+.+..+...|+ +|++++++++|.+.+
T Consensus       115 ~~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~~~~~~~l  156 (270)
T TIGR00507       115 RPNQRVLIIGAGGAARAVALPLLKADC-NVIIANRTVSKAEEL  156 (270)
T ss_pred             ccCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            457889999999999998888888898 899999998876544

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=93.51  E-value=0.36  Score=38.28  Aligned_cols=58  Identities=21%  Similarity=0.138  Sum_probs=39.9

Q ss_pred             ccccchhhhhhhhhhCCCCCCCEEEEECCCH-HHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 025895          175 LGCGVPTGLGAVWNTAKVEPGSIVAVFGLGT-VGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (246)
Q Consensus       175 l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~-~G~~ai~~a~~~G~~~vi~~~~~~~~~~  233 (246)
                      .++...++...+.....--.+++|+|+|+|. +|..++..++..|+ +|+++.++.+.+.
T Consensus        24 ~p~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~~~~l~   82 (168)
T cd01080          24 IPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSKTKNLK   82 (168)
T ss_pred             cCChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECCchhHH
Confidence            3433333333333333345789999999986 59989999999999 7888888765443

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK09242 tropinone reductase; Provisional

Probab=93.42  E-value=0.26  Score=41.19  Aligned_cols=41  Identities=24%  Similarity=0.361  Sum_probs=34.8

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .++++||+|+ |.+|...+..+...|+ +|+++++++++.+.+
T Consensus         8 ~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~   49 (257)
T PRK09242          8 DGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQA   49 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            3678999998 8999999999989999 899999988776543

>PRK05717 oxidoreductase; Validated

Probab=93.40  E-value=0.26  Score=41.16  Aligned_cols=40  Identities=28%  Similarity=0.383  Sum_probs=33.3

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR  234 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~  234 (246)
                      .++++||+|+ |.+|...+..+...|+ +|+.+++++++.+.
T Consensus         9 ~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~~~~~~~   49 (255)
T PRK05717          9 NGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLDRERGSK   49 (255)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCCHHHHHH
Confidence            4678999988 9999998888888899 89999888765544

>PRK06197 short chain dehydrogenase; Provisional

Probab=93.37  E-value=0.22  Score=42.98  Aligned_cols=39  Identities=26%  Similarity=0.264  Sum_probs=33.3

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~  233 (246)
                      .++++||+|+ |++|...++.+...|+ +|+.+.++.++.+
T Consensus        15 ~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~   54 (306)
T PRK06197         15 SGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRNLDKGK   54 (306)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            5688999998 9999998888888899 8999988877654

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=93.27  E-value=0.54  Score=40.55  Aligned_cols=44  Identities=32%  Similarity=0.468  Sum_probs=34.5

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      .+++++||-+|.|. |.+++.+++ .|+.+|+++|.++..++.+++
T Consensus       157 ~~~g~~VLDvGcGs-G~lai~aa~-~g~~~V~avDid~~al~~a~~  200 (288)
T TIGR00406       157 DLKDKNVIDVGCGS-GILSIAALK-LGAAKVVGIDIDPLAVESARK  200 (288)
T ss_pred             cCCCCEEEEeCCCh-hHHHHHHHH-cCCCeEEEEECCHHHHHHHHH
Confidence            45778999999876 777777665 566699999999987776654

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=93.13  E-value=0.34  Score=38.13  Aligned_cols=49  Identities=31%  Similarity=0.388  Sum_probs=36.6

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      .-.|++++|.|=|.+|...++.++.+|+ +|++++..+-+.-.+.--|.+
T Consensus        20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga-~V~V~e~DPi~alqA~~dGf~   68 (162)
T PF00670_consen   20 MLAGKRVVVIGYGKVGKGIARALRGLGA-RVTVTEIDPIRALQAAMDGFE   68 (162)
T ss_dssp             --TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHHHHHHHHHTT-E
T ss_pred             eeCCCEEEEeCCCcccHHHHHHHhhCCC-EEEEEECChHHHHHhhhcCcE
Confidence            4578999999999999999999999999 999999999877666554443

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=93.13  E-value=0.35  Score=38.94  Aligned_cols=42  Identities=29%  Similarity=0.365  Sum_probs=34.8

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~  236 (246)
                      .+.+++|+|+ |.+|...+..+...|+ +|+.++++.++.+.+.
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R~~~~~~~l~   69 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGRDLERAQKAA   69 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHH
Confidence            5678999997 9999988888888898 8999999988766543

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=93.09  E-value=0.23  Score=42.95  Aligned_cols=43  Identities=30%  Similarity=0.301  Sum_probs=36.0

Q ss_pred             CCCCEEEEECC-CHHHHH-HHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          193 EPGSIVAVFGL-GTVGLA-VAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       193 ~~~~~VlI~Ga-g~~G~~-ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      +.|++.+|+|+ .++|.. |-++|+ .|+ +|+.++|+++|++.+++
T Consensus        47 ~~g~WAVVTGaTDGIGKayA~eLAk-rG~-nvvLIsRt~~KL~~v~k   91 (312)
T KOG1014|consen   47 KLGSWAVVTGATDGIGKAYARELAK-RGF-NVVLISRTQEKLEAVAK   91 (312)
T ss_pred             hcCCEEEEECCCCcchHHHHHHHHH-cCC-EEEEEeCCHHHHHHHHH
Confidence            45689999999 789976 777777 999 89999999999986653

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=93.07  E-value=0.3  Score=41.31  Aligned_cols=40  Identities=30%  Similarity=0.428  Sum_probs=33.7

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR  234 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~  234 (246)
                      .+++++|+|+ |++|...+..+...|+ +|+++++++++.+.
T Consensus         9 ~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~   49 (278)
T PRK08277          9 KGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRNQEKAEA   49 (278)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            3578999988 8999999998889999 89999998766543

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=92.94  E-value=0.37  Score=35.09  Aligned_cols=43  Identities=30%  Similarity=0.467  Sum_probs=37.1

Q ss_pred             EEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       198 VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      |+|.|.|.+|...++.++..+. +|++++.++++.+.+++.|..
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~-~vvvid~d~~~~~~~~~~~~~   43 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGI-DVVVIDRDPERVEELREEGVE   43 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHTTSE
T ss_pred             eEEEcCCHHHHHHHHHHHhCCC-EEEEEECCcHHHHHHHhcccc
Confidence            5788999999999999999776 899999999999999887754

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PLN02253 xanthoxin dehydrogenase

Probab=92.87  E-value=0.34  Score=41.07  Aligned_cols=39  Identities=21%  Similarity=0.227  Sum_probs=32.7

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~  233 (246)
                      .++++||+|+ |.+|...++.+...|+ +|+++++++++.+
T Consensus        17 ~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~~~~~~~   56 (280)
T PLN02253         17 LGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDLQDDLGQ   56 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHH
Confidence            3578999988 8999998888888899 8999988876554

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=92.76  E-value=0.28  Score=44.14  Aligned_cols=56  Identities=21%  Similarity=0.297  Sum_probs=45.0

Q ss_pred             hhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcC
Q 025895          182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCV  239 (246)
Q Consensus       182 a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg  239 (246)
                      .+..+.+..+++++++||-+|.| .|..+..+++..|+ +|++++.+++.++.+++..
T Consensus       155 k~~~l~~~l~l~~g~rVLDIGcG-~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~  210 (383)
T PRK11705        155 KLDLICRKLQLKPGMRVLDIGCG-WGGLARYAAEHYGV-SVVGVTISAEQQKLAQERC  210 (383)
T ss_pred             HHHHHHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh
Confidence            34445567788999999999874 56677888888898 9999999999998887644

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=92.67  E-value=0.34  Score=40.55  Aligned_cols=34  Identities=26%  Similarity=0.255  Sum_probs=30.0

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      .++++||+|+ |++|...++.+...|+ +|++++++
T Consensus        14 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~   48 (258)
T PRK06935         14 DGKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTHG   48 (258)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            4689999998 8999999999989999 88888777

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=92.58  E-value=0.51  Score=42.95  Aligned_cols=47  Identities=13%  Similarity=0.109  Sum_probs=39.1

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh-hcC
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM-SCV  239 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~-~lg  239 (246)
                      -.+.+++|+|+|.+|.+++..+...|+.+++++.++.+|.+.+. +++
T Consensus       179 l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~  226 (414)
T PRK13940        179 ISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFR  226 (414)
T ss_pred             ccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhc
Confidence            45688999999999999999999999888999999988755444 344

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=92.45  E-value=0.29  Score=41.36  Aligned_cols=38  Identities=29%  Similarity=0.419  Sum_probs=33.6

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      ..+..+++|+|+|.++...+++|+.+|+ +|+++|..++
T Consensus        97 ~~p~~~L~IfGaG~va~~la~la~~lGf-~V~v~D~R~~  134 (246)
T TIGR02964        97 APPAPHVVLFGAGHVGRALVRALAPLPC-RVTWVDSREA  134 (246)
T ss_pred             cCCCCEEEEECCcHHHHHHHHHHhcCCC-EEEEEeCCcc
Confidence            4566799999999999999999999999 8999876655

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=92.38  E-value=0.43  Score=40.11  Aligned_cols=41  Identities=32%  Similarity=0.503  Sum_probs=33.8

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .++++||+|+ +.+|...+..+...|+ +|+.+++++++++.+
T Consensus         9 ~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~   50 (265)
T PRK07097          9 KGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKG   50 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH
Confidence            4578999988 8999988888888899 899999988776543

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=92.33  E-value=0.37  Score=32.84  Aligned_cols=33  Identities=30%  Similarity=0.424  Sum_probs=29.4

Q ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       197 ~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      +|+|+|+|.+|+-.+..++.+|. +|..+.+++.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~~   33 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSDR   33 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccch
Confidence            58899999999999999999998 8888888774

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=92.28  E-value=0.5  Score=39.30  Aligned_cols=36  Identities=28%  Similarity=0.394  Sum_probs=32.1

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCC--eEEEEcCC
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGAS--RVIGIDID  228 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~--~vi~~~~~  228 (246)
                      -.+.+++|+|+|..|..++..+...|+.  +++.++++
T Consensus        23 l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~   60 (226)
T cd05311          23 IEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK   60 (226)
T ss_pred             ccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence            3457999999999999999988899997  89999998

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=92.24  E-value=0.14  Score=39.17  Aligned_cols=34  Identities=38%  Similarity=0.584  Sum_probs=27.6

Q ss_pred             EEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHH
Q 025895          198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF  232 (246)
Q Consensus       198 VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~  232 (246)
                      ++|+|+|.++...+++++.+|+ +|++++..+++.
T Consensus         1 L~I~GaG~va~al~~la~~lg~-~v~v~d~r~e~~   34 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGF-RVTVVDPRPERF   34 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTE-EEEEEES-CCC-
T ss_pred             CEEEeCcHHHHHHHHHHHhCCC-EEEEEcCCcccc
Confidence            5788999999999999999999 888888877643

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.23  E-value=0.45  Score=43.97  Aligned_cols=47  Identities=30%  Similarity=0.267  Sum_probs=36.9

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh-----HHHHHhhcCCC
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK-----KFDRGMSCVSS  241 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~-----~~~~~~~lg~~  241 (246)
                      .+++|+|+|+|.+|+.++.+++..|+ +|++++.++.     ..+.+++.|..
T Consensus        15 ~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~l~~~gv~   66 (480)
T PRK01438         15 QGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDGDDERHRALAAILEALGAT   66 (480)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhhHHHHHHHHHcCCE
Confidence            45789999999999999999999999 8999986652     23445666654

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=92.19  E-value=0.4  Score=40.31  Aligned_cols=37  Identities=22%  Similarity=0.309  Sum_probs=30.4

Q ss_pred             CCCEEEEECCC---HHHHHHHHHHHHcCCCeEEEEcCChhH
Q 025895          194 PGSIVAVFGLG---TVGLAVAEGAKAAGASRVIGIDIDPKK  231 (246)
Q Consensus       194 ~~~~VlI~Gag---~~G~~ai~~a~~~G~~~vi~~~~~~~~  231 (246)
                      .++++||+|++   ++|.+.++.+...|+ +|+.++++++.
T Consensus         9 ~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~   48 (258)
T PRK07533          9 AGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKA   48 (258)
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhh
Confidence            46789999873   899998888888999 88888887643

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=92.11  E-value=0.5  Score=39.42  Aligned_cols=40  Identities=25%  Similarity=0.347  Sum_probs=33.5

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR  234 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~  234 (246)
                      .++++||+|+ +++|...+..+...|+ +++.+++++++.+.
T Consensus        10 ~~k~vlVtG~s~gIG~~la~~l~~~G~-~vv~~~r~~~~~~~   50 (255)
T PRK06113         10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANH   50 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHH
Confidence            4689999988 8999999988888999 88888888776543

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=92.02  E-value=0.43  Score=44.85  Aligned_cols=42  Identities=33%  Similarity=0.434  Sum_probs=36.3

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~  236 (246)
                      .+++++|+|+|++|.+++..+...|+ +|+++.++.+|.+.+.
T Consensus       378 ~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR~~e~a~~la  419 (529)
T PLN02520        378 AGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANRTYERAKELA  419 (529)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHH
Confidence            35789999999999999999999999 9999999888766553

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=91.92  E-value=0.37  Score=41.35  Aligned_cols=49  Identities=22%  Similarity=0.322  Sum_probs=34.7

Q ss_pred             hhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       186 l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~  236 (246)
                      +.+..++++|++||-+|.| -|..++.+++..|+ +|++++.|++..+.++
T Consensus        54 ~~~~~~l~~G~~vLDiGcG-wG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~  102 (273)
T PF02353_consen   54 LCEKLGLKPGDRVLDIGCG-WGGLAIYAAERYGC-HVTGITLSEEQAEYAR  102 (273)
T ss_dssp             HHTTTT--TT-EEEEES-T-TSHHHHHHHHHH---EEEEEES-HHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHcCc-EEEEEECCHHHHHHHH
Confidence            5678899999999999886 45667778888899 9999999999877664

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=91.81  E-value=0.56  Score=37.95  Aligned_cols=48  Identities=23%  Similarity=0.407  Sum_probs=39.4

Q ss_pred             hhCCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHh
Q 025895          188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       188 ~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~-~~vi~~~~~~~~~~~~~  236 (246)
                      ....+.++++|+-+|+|. |..++.+++..+. .+|++++.+++..+.++
T Consensus        34 ~~l~~~~~~~vlDlG~Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~   82 (198)
T PRK00377         34 SKLRLRKGDMILDIGCGT-GSVTVEASLLVGETGKVYAVDKDEKAINLTR   82 (198)
T ss_pred             HHcCCCCcCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence            456788999999999977 8888888887642 48999999998887654

>PRK06484 short chain dehydrogenase; Validated

Probab=91.68  E-value=0.52  Score=43.85  Aligned_cols=44  Identities=34%  Similarity=0.381  Sum_probs=37.4

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       193 ~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      ..++++||+|+ +++|...++.+...|+ +|+.+++++++++.+.+
T Consensus       267 ~~~k~~lItGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~  311 (520)
T PRK06484        267 ESPRVVAITGGARGIGRAVADRFAAAGD-RLLIIDRDAEGAKKLAE  311 (520)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            45788999988 8999999998888999 99999999888776553

>PRK06720 hypothetical protein; Provisional

Probab=91.61  E-value=0.71  Score=36.52  Aligned_cols=39  Identities=31%  Similarity=0.282  Sum_probs=32.5

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~  233 (246)
                      .+++++|+|+ +++|...+..+...|+ +|+++++++++.+
T Consensus        15 ~gk~~lVTGa~~GIG~aia~~l~~~G~-~V~l~~r~~~~~~   54 (169)
T PRK06720         15 AGKVAIVTGGGIGIGRNTALLLAKQGA-KVIVTDIDQESGQ   54 (169)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHCCC-EEEEEECCHHHHH
Confidence            4678999988 7899998888888898 8999998877654

>PRK07775 short chain dehydrogenase; Provisional

Probab=91.60  E-value=0.61  Score=39.51  Aligned_cols=39  Identities=26%  Similarity=0.103  Sum_probs=32.5

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~  233 (246)
                      +.++++|+|+ |.+|...++.+...|+ +|+++.++.++.+
T Consensus         9 ~~~~vlVtGa~g~iG~~la~~L~~~G~-~V~~~~r~~~~~~   48 (274)
T PRK07775          9 DRRPALVAGASSGIGAATAIELAAAGF-PVALGARRVEKCE   48 (274)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            3468999998 9999999988888999 8888888776654

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=91.49  E-value=0.6  Score=39.02  Aligned_cols=39  Identities=28%  Similarity=0.182  Sum_probs=32.8

Q ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 025895          195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR  234 (246)
Q Consensus       195 ~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~  234 (246)
                      ..+|||+|+ |.+|...+..+...|+ +|+++.+++++...
T Consensus        17 ~~~ilItGasG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~   56 (251)
T PLN00141         17 TKTVFVAGATGRTGKRIVEQLLAKGF-AVKAGVRDVDKAKT   56 (251)
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCC-EEEEEecCHHHHHH
Confidence            578999998 9999999988888898 89988888776543

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=91.35  E-value=0.43  Score=42.13  Aligned_cols=47  Identities=21%  Similarity=0.260  Sum_probs=36.4

Q ss_pred             hhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          181 TGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       181 ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      |+|.-+.....++. .+|||+|+ |.+|...+..+...|. +|+++++..
T Consensus         2 ~~~~~~~~~~~~~~-~~vlVtGatGfiG~~lv~~L~~~g~-~V~~~d~~~   49 (348)
T PRK15181          2 TAYEELRTKLVLAP-KRWLITGVAGFIGSGLLEELLFLNQ-TVIGLDNFS   49 (348)
T ss_pred             chhhhhhhcccccC-CEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence            56665544444444 68999998 9999999999999998 899998754

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=91.18  E-value=0.71  Score=33.12  Aligned_cols=42  Identities=38%  Similarity=0.600  Sum_probs=33.0

Q ss_pred             CCCEEEEECCCHHHHHHHHHHH-HcCCCeEEEEcCChhHHHHHhh
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~-~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      |+++||-+|.|. |..++.+++ ..++ +|++++.+++-++.+++
T Consensus         1 p~~~vLDlGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~   43 (112)
T PF12847_consen    1 PGGRVLDLGCGT-GRLSIALARLFPGA-RVVGVDISPEMLEIARE   43 (112)
T ss_dssp             TTCEEEEETTTT-SHHHHHHHHHHTTS-EEEEEESSHHHHHHHHH
T ss_pred             CCCEEEEEcCcC-CHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHH
Confidence            578898888753 666667777 4677 89999999998887765

...

>PLN00203 glutamyl-tRNA reductase

Probab=91.03  E-value=0.55  Score=44.04  Aligned_cols=43  Identities=14%  Similarity=0.273  Sum_probs=37.9

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      +.+|+|+|+|.+|.+++..+...|+.+|+++.++.++.+.+.+
T Consensus       266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~  308 (519)
T PLN00203        266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALRE  308 (519)
T ss_pred             CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Confidence            6889999999999999999999998789999999988766553

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=91.01  E-value=0.51  Score=40.62  Aligned_cols=41  Identities=22%  Similarity=0.403  Sum_probs=32.0

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .++.|+|+|| +++|...+.-.-..|+ .++.+.+..++++.+
T Consensus        11 ~~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar~~rrl~~v   52 (282)
T KOG1205|consen   11 AGKVVLITGASSGIGEALAYELAKRGA-KLVLVARRARRLERV   52 (282)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeehhhhhHHHH
Confidence            4578999999 8999887777777888 677777777776655

>PLN02686 cinnamoyl-CoA reductase

Probab=90.92  E-value=0.68  Score=41.29  Aligned_cols=43  Identities=19%  Similarity=0.109  Sum_probs=34.2

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       193 ~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~  236 (246)
                      ..+++|||+|+ |.+|...+..+...|+ +|+++.++.++.+.++
T Consensus        51 ~~~k~VLVTGatGfIG~~lv~~L~~~G~-~V~~~~r~~~~~~~l~   94 (367)
T PLN02686         51 AEARLVCVTGGVSFLGLAIVDRLLRHGY-SVRIAVDTQEDKEKLR   94 (367)
T ss_pred             CCCCEEEEECCchHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            44679999988 9999999999999999 8888777766554433

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=90.90  E-value=0.67  Score=42.08  Aligned_cols=39  Identities=33%  Similarity=0.541  Sum_probs=33.3

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~  233 (246)
                      .+++++|+|+ |++|...+..+...|+ +|+++++++++++
T Consensus       177 ~gK~VLITGASgGIG~aLA~~La~~G~-~Vi~l~r~~~~l~  216 (406)
T PRK07424        177 KGKTVAVTGASGTLGQALLKELHQQGA-KVVALTSNSDKIT  216 (406)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            3679999998 9999999888888999 8999988877654

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=90.82  E-value=0.54  Score=44.48  Aligned_cols=45  Identities=22%  Similarity=0.241  Sum_probs=40.9

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      ++++|.|.|.+|...++.++..|. +++++|.++++.+.+++.|..
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~~~~~~~~~g~~  462 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRTRVDELRERGIR  462 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHCCCe
Confidence            678999999999999999999998 899999999999999887654

>PRK12367 short chain dehydrogenase; Provisional

Probab=90.67  E-value=0.67  Score=38.85  Aligned_cols=34  Identities=32%  Similarity=0.616  Sum_probs=30.0

Q ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       195 ~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      ++++||+|+ |++|...++.+...|+ +|+++++++
T Consensus        14 ~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~~   48 (245)
T PRK12367         14 GKRIGITGASGALGKALTKAFRAKGA-KVIGLTHSK   48 (245)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECCc
Confidence            578999998 8999999998889999 899888876

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=90.60  E-value=1.1  Score=31.40  Aligned_cols=43  Identities=28%  Similarity=0.352  Sum_probs=34.3

Q ss_pred             EEEEECCCHHHHHHHHHHHHcC---CCeEE-EEcCChhHHHHHh-hcCC
Q 025895          197 IVAVFGLGTVGLAVAEGAKAAG---ASRVI-GIDIDPKKFDRGM-SCVS  240 (246)
Q Consensus       197 ~VlI~Gag~~G~~ai~~a~~~G---~~~vi-~~~~~~~~~~~~~-~lg~  240 (246)
                      +|.|+|.|.+|.+.+.-....|   . +|+ ++++++++.+.++ +++.
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~-~v~~~~~r~~~~~~~~~~~~~~   48 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPH-EVIIVSSRSPEKAAELAKEYGV   48 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GG-EEEEEEESSHHHHHHHHHHCTT
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCce-eEEeeccCcHHHHHHHHHhhcc
Confidence            4778899999999999888888   6 777 5499999887764 4553

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK06523 short chain dehydrogenase; Provisional

Probab=90.55  E-value=0.56  Score=39.16  Aligned_cols=36  Identities=28%  Similarity=0.267  Sum_probs=30.5

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      +++++||+|+ |++|...++.+...|+ +|++++++++
T Consensus         8 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~r~~~   44 (260)
T PRK06523          8 AGKRALVTGGTKGIGAATVARLLEAGA-RVVTTARSRP   44 (260)
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHCCC-EEEEEeCChh
Confidence            4689999998 8999999988888999 8888887653

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=90.39  E-value=0.63  Score=44.67  Aligned_cols=47  Identities=19%  Similarity=0.253  Sum_probs=42.3

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      .++|+|.|.|.+|+..++.++..|. +++++|.++++.+.+++.|...
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~g~~v  446 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRKFGMKV  446 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhcCCeE
Confidence            3679999999999999999999999 8999999999999998877653

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=90.37  E-value=0.99  Score=37.33  Aligned_cols=36  Identities=36%  Similarity=0.432  Sum_probs=30.7

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      .+.+|+|.|-|.+|..+++.+...|+..|.+.|.+.
T Consensus        22 ~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g   57 (217)
T cd05211          22 EGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG   57 (217)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence            578999999999999999999999995555566666

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=90.35  E-value=0.66  Score=44.78  Aligned_cols=36  Identities=31%  Similarity=0.385  Sum_probs=31.8

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      ..+++|+|+|+|+.|+.++..+...|. +|++++.++
T Consensus       191 ~~~k~VaIIGaGpAGl~aA~~La~~G~-~Vtv~e~~~  226 (652)
T PRK12814        191 KSGKKVAIIGAGPAGLTAAYYLLRKGH-DVTIFDANE  226 (652)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence            457899999999999999999999999 888887764

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=90.32  E-value=0.88  Score=40.11  Aligned_cols=40  Identities=23%  Similarity=0.133  Sum_probs=32.9

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 025895          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (246)
Q Consensus       193 ~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~  233 (246)
                      ..+.+|||+|+ |.+|...++.+...|+ +|++++++.++.+
T Consensus         8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~-~V~~~~r~~~~~~   48 (353)
T PLN02896          8 SATGTYCVTGATGYIGSWLVKLLLQRGY-TVHATLRDPAKSL   48 (353)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCChHHHH
Confidence            34568999987 9999999999988999 8998888765543

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=90.27  E-value=1.2  Score=32.34  Aligned_cols=48  Identities=23%  Similarity=0.401  Sum_probs=37.4

Q ss_pred             hhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895          188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       188 ~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~  236 (246)
                      ....+.++++|+-+|.|. |..+..+++..+..+++++|.++...+.++
T Consensus        13 ~~~~~~~~~~vldlG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~   60 (124)
T TIGR02469        13 SKLRLRPGDVLWDIGAGS-GSITIEAARLVPNGRVYAIERNPEALRLIE   60 (124)
T ss_pred             HHcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCceEEEEcCCHHHHHHHH
Confidence            445566778888888866 888888888875458999999998877654

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=90.23  E-value=0.59  Score=31.03  Aligned_cols=30  Identities=33%  Similarity=0.424  Sum_probs=25.8

Q ss_pred             EECCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          200 VFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       200 I~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      |+|+|..|+.++..++..|. +|.+++.++.
T Consensus         1 IiGaG~sGl~aA~~L~~~g~-~v~v~E~~~~   30 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGY-RVTVFEKNDR   30 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTS-EEEEEESSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCC-cEEEEecCcc
Confidence            67999999999999999999 9999987764

...

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=89.83  E-value=0.71  Score=44.14  Aligned_cols=45  Identities=16%  Similarity=0.150  Sum_probs=41.3

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      +.|+|.|.|.+|+..++.++..|. +++++|.++++.+.+++.|..
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~g~~  445 (601)
T PRK03659        401 PQVIIVGFGRFGQVIGRLLMANKM-RITVLERDISAVNLMRKYGYK  445 (601)
T ss_pred             CCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhCCCe
Confidence            578999999999999999999999 899999999999999888765

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=89.57  E-value=1  Score=38.31  Aligned_cols=35  Identities=20%  Similarity=0.306  Sum_probs=29.1

Q ss_pred             CCCEEEEECC---CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          194 PGSIVAVFGL---GTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       194 ~~~~VlI~Ga---g~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      .++++||+|+   +++|...+..+...|+ +|+.+.+++
T Consensus         9 ~~k~~lItGas~~~GIG~aia~~la~~G~-~V~l~~r~~   46 (272)
T PRK08159          9 AGKRGLILGVANNRSIAWGIAKACRAAGA-ELAFTYQGD   46 (272)
T ss_pred             cCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCch
Confidence            4678999987   5899998888888999 888887764

>PRK07574 formate dehydrogenase; Provisional

Probab=89.54  E-value=0.89  Score=41.01  Aligned_cols=39  Identities=26%  Similarity=0.313  Sum_probs=33.8

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~  233 (246)
                      .|.+|.|+|.|.+|...++.++..|+ +|++++++....+
T Consensus       191 ~gktVGIvG~G~IG~~vA~~l~~fG~-~V~~~dr~~~~~~  229 (385)
T PRK07574        191 EGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDRHRLPEE  229 (385)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCCCCchh
Confidence            56789999999999999999999999 9999998764333

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=89.50  E-value=1.3  Score=34.86  Aligned_cols=48  Identities=21%  Similarity=0.380  Sum_probs=33.5

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      .+++|.|+|-|.-|.+..+-+|..|.+-+|+........+.+++-|+.
T Consensus         3 ~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~   50 (165)
T PF07991_consen    3 KGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFE   50 (165)
T ss_dssp             CTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-E
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCe
Confidence            468999999999999999999999992222332222378888888876

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK14982 acyl-ACP reductase; Provisional

Probab=89.47  E-value=1.1  Score=39.68  Aligned_cols=44  Identities=20%  Similarity=0.300  Sum_probs=35.0

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHH-HcCCCeEEEEcCChhHHHHHh
Q 025895          193 EPGSIVAVFGL-GTVGLAVAEGAK-AAGASRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       193 ~~~~~VlI~Ga-g~~G~~ai~~a~-~~G~~~vi~~~~~~~~~~~~~  236 (246)
                      -.+++|+|+|+ |.+|...++.+. ..|..+++.+.++++++..+.
T Consensus       153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La  198 (340)
T PRK14982        153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQ  198 (340)
T ss_pred             cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHH
Confidence            35689999999 899988877775 457678999999988776544

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.43  E-value=1.2  Score=41.35  Aligned_cols=47  Identities=21%  Similarity=0.128  Sum_probs=37.0

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHH-HhhcCC
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR-GMSCVS  240 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~-~~~lg~  240 (246)
                      -.+++|+|+|.|..|.+++.+++..|+ .|.+.|++..+... +.++|.
T Consensus        13 ~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~~~~~~~l~~~gi   60 (473)
T PRK00141         13 ELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADDNETARHKLIEVTGV   60 (473)
T ss_pred             ccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECCChHHHHHHHHhcCc
Confidence            345679999999999999999999999 99999987655432 344554

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=89.41  E-value=1  Score=39.53  Aligned_cols=47  Identities=28%  Similarity=0.278  Sum_probs=37.7

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCC
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVS  240 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~  240 (246)
                      -.+++|.|+|-|.+|...++.++..|+ +|++.++.....+.+...|+
T Consensus        14 LkgKtVGIIG~GsIG~amA~nL~d~G~-~ViV~~r~~~s~~~A~~~G~   60 (335)
T PRK13403         14 LQGKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGVRPGKSFEVAKADGF   60 (335)
T ss_pred             hCcCEEEEEeEcHHHHHHHHHHHHCcC-EEEEEECcchhhHHHHHcCC
Confidence            356899999999999999999999999 88887666555555555554

>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=89.22  E-value=1.1  Score=39.18  Aligned_cols=42  Identities=19%  Similarity=0.265  Sum_probs=35.2

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~  236 (246)
                      .+.+++|+|+ +++|...+..+-..|+ +||...++.++.+.++
T Consensus        34 ~~~~~vVTGansGIG~eta~~La~~Ga-~Vv~~~R~~~~~~~~~   76 (314)
T KOG1208|consen   34 SGKVALVTGATSGIGFETARELALRGA-HVVLACRNEERGEEAK   76 (314)
T ss_pred             CCcEEEEECCCCchHHHHHHHHHhCCC-EEEEEeCCHHHHHHHH
Confidence            4478899998 8999999999999998 9999999987665543

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=89.18  E-value=0.63  Score=39.01  Aligned_cols=37  Identities=35%  Similarity=0.508  Sum_probs=30.6

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~  231 (246)
                      .++++||+|+ |++|...++.+...|+ +|+.+++++++
T Consensus         8 ~~k~vlItG~s~gIG~~la~~l~~~G~-~v~~~~~~~~~   45 (266)
T PRK06171          8 QGKIIIVTGGSSGIGLAIVKELLANGA-NVVNADIHGGD   45 (266)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCccc
Confidence            3578999988 9999999998888999 88888776543

>PLN03139 formate dehydrogenase; Provisional

Probab=89.17  E-value=0.9  Score=40.96  Aligned_cols=45  Identities=16%  Similarity=0.123  Sum_probs=36.6

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcC
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCV  239 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg  239 (246)
                      .|++|.|+|.|.+|...++.++.+|+ +|++++++..+.+...++|
T Consensus       198 ~gktVGIVG~G~IG~~vA~~L~afG~-~V~~~d~~~~~~~~~~~~g  242 (386)
T PLN03139        198 EGKTVGTVGAGRIGRLLLQRLKPFNC-NLLYHDRLKMDPELEKETG  242 (386)
T ss_pred             CCCEEEEEeecHHHHHHHHHHHHCCC-EEEEECCCCcchhhHhhcC
Confidence            57899999999999999999999999 8999998754444444444

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=89.16  E-value=0.48  Score=34.19  Aligned_cols=35  Identities=34%  Similarity=0.282  Sum_probs=30.4

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      .+.+|||+|+|.+|..-++.+...|+ +|++++...
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA-~v~vis~~~   40 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGA-KVTVISPEI   40 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTB-EEEEEESSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCch
Confidence            45789999999999999999999999 898887774

>PLN02778 3,5-epimerase/4-reductase

Probab=89.14  E-value=1.2  Score=38.49  Aligned_cols=51  Identities=8%  Similarity=-0.011  Sum_probs=35.0

Q ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHH----HHHhhcCCCccccC
Q 025895          195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKF----DRGMSCVSSSKYHL  246 (246)
Q Consensus       195 ~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~----~~~~~lg~~~~~~~  246 (246)
                      ..+|||+|+ |.+|...++.+...|. +|+.....-...    ..+++.++|..+|+
T Consensus         9 ~~kiLVtG~tGfiG~~l~~~L~~~g~-~V~~~~~~~~~~~~v~~~l~~~~~D~ViH~   64 (298)
T PLN02778          9 TLKFLIYGKTGWIGGLLGKLCQEQGI-DFHYGSGRLENRASLEADIDAVKPTHVFNA   64 (298)
T ss_pred             CCeEEEECCCCHHHHHHHHHHHhCCC-EEEEecCccCCHHHHHHHHHhcCCCEEEEC
Confidence            357999988 9999999999999998 776543322222    23345567766653

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=89.14  E-value=1  Score=35.23  Aligned_cols=32  Identities=28%  Similarity=0.425  Sum_probs=27.5

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEc
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID  226 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~  226 (246)
                      .+.+|||+|+|.+|.--++.+...|+ .|++++
T Consensus        12 ~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIs   43 (157)
T PRK06719         12 HNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVS   43 (157)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEc
Confidence            45889999999999998888888999 787774

>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]

Probab=88.99  E-value=1.7  Score=37.65  Aligned_cols=56  Identities=20%  Similarity=0.184  Sum_probs=43.6

Q ss_pred             hhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEE--cCChhHHHHHhhcCCCcc
Q 025895          187 WNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI--DIDPKKFDRGMSCVSSSK  243 (246)
Q Consensus       187 ~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~--~~~~~~~~~~~~lg~~~~  243 (246)
                      .....+++|. .+|-+. |.+|+..+.+|+.+|++-++++  ..+.+|+++++.+||.+.
T Consensus        54 e~~G~l~pG~-tIVE~TSGNTGI~LA~vaa~~Gy~~iivmP~~~S~er~~~l~a~GAevi  112 (300)
T COG0031          54 EKRGLLKPGG-TIVEATSGNTGIALAMVAAAKGYRLIIVMPETMSQERRKLLRALGAEVI  112 (300)
T ss_pred             HHcCCCCCCC-EEEEcCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Confidence            4556789988 455665 9999999999999999545555  346789999999999854

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=88.89  E-value=1.1  Score=43.41  Aligned_cols=41  Identities=24%  Similarity=0.283  Sum_probs=34.7

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .++++||+|+ |++|...++.+...|+ +|++++++.++.+.+
T Consensus       413 ~gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r~~~~~~~~  454 (676)
T TIGR02632       413 ARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADLNLEAAEAV  454 (676)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHH
Confidence            4688999988 9999999988888999 999999988766543

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=88.84  E-value=1.8  Score=40.28  Aligned_cols=42  Identities=21%  Similarity=0.219  Sum_probs=36.1

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~  236 (246)
                      .+.+++|+|+|++|.+++..+...|+ +++++++++++.+.+.
T Consensus       331 ~~k~vlIiGaGgiG~aia~~L~~~G~-~V~i~~R~~~~~~~la  372 (477)
T PRK09310        331 NNQHVAIVGAGGAAKAIATTLARAGA-ELLIFNRTKAHAEALA  372 (477)
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            46789999999999999999999999 8999999988766543

>PRK07201 short chain dehydrogenase; Provisional

Probab=88.71  E-value=1.2  Score=42.73  Aligned_cols=40  Identities=28%  Similarity=0.347  Sum_probs=34.2

Q ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       195 ~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      ++++||+|+ |++|...+..+...|+ +|+++++++++++.+
T Consensus       371 ~k~vlItGas~giG~~la~~l~~~G~-~V~~~~r~~~~~~~~  411 (657)
T PRK07201        371 GKVVLITGASSGIGRATAIKVAEAGA-TVFLVARNGEALDEL  411 (657)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            578999998 8999998888888899 899999998876543

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=88.65  E-value=0.71  Score=42.66  Aligned_cols=34  Identities=29%  Similarity=0.464  Sum_probs=30.7

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      ..+|+|+|+|+.|++++..++..|. +++++++++
T Consensus        10 ~~~VaIIGAG~aGL~aA~~l~~~G~-~v~vfE~~~   43 (461)
T PLN02172         10 SQHVAVIGAGAAGLVAARELRREGH-TVVVFEREK   43 (461)
T ss_pred             CCCEEEECCcHHHHHHHHHHHhcCC-eEEEEecCC
Confidence            4679999999999999999999999 899998765

>PRK13984 putative oxidoreductase; Provisional

Probab=88.65  E-value=1.3  Score=42.21  Aligned_cols=37  Identities=24%  Similarity=0.208  Sum_probs=32.3

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      .+.+++|+|+|+|+.|+.++..++..|. +|++++..+
T Consensus       280 ~~~~~~v~IIGaG~aGl~aA~~L~~~G~-~v~vie~~~  316 (604)
T PRK13984        280 EKKNKKVAIVGSGPAGLSAAYFLATMGY-EVTVYESLS  316 (604)
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence            4678899999999999999999999999 888886654

>PLN02928 oxidoreductase family protein

Probab=88.58  E-value=0.95  Score=40.22  Aligned_cols=35  Identities=20%  Similarity=0.433  Sum_probs=32.1

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      .|++|.|+|.|.+|...++.++.+|+ +|++++++.
T Consensus       158 ~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr~~  192 (347)
T PLN02928        158 FGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRSW  192 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCC
Confidence            57899999999999999999999999 999998863

>PRK05855 short chain dehydrogenase; Validated

Probab=88.52  E-value=1.3  Score=41.45  Aligned_cols=41  Identities=32%  Similarity=0.443  Sum_probs=34.5

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .+.++||+|+ |++|...++.+...|+ +|+.+++++++++.+
T Consensus       314 ~~~~~lv~G~s~giG~~~a~~l~~~G~-~v~~~~r~~~~~~~~  355 (582)
T PRK05855        314 SGKLVVVTGAGSGIGRETALAFAREGA-EVVASDIDEAAAERT  355 (582)
T ss_pred             CCCEEEEECCcCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4568999988 9999998888888999 899999998776643

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=88.45  E-value=2  Score=39.48  Aligned_cols=35  Identities=34%  Similarity=0.352  Sum_probs=30.3

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEE-EEcCC
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVI-GIDID  228 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi-~~~~~  228 (246)
                      -.|.+|+|.|.|.+|..+++.+..+|+ +|+ +.|.+
T Consensus       235 l~Gk~VaVqG~GnVg~~aa~~L~e~Ga-kVVavSD~~  270 (454)
T PTZ00079        235 LEGKTVVVSGSGNVAQYAVEKLLQLGA-KVLTMSDSD  270 (454)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEEcCC
Confidence            467899999999999999999999999 888 44444

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=88.44  E-value=1.3  Score=41.12  Aligned_cols=35  Identities=37%  Similarity=0.509  Sum_probs=30.5

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      ..+++|+|+|+|+.|+.++..++..|+ +|++++..
T Consensus       141 ~~~~~V~IIGaG~aGl~aA~~L~~~g~-~V~v~e~~  175 (485)
T TIGR01317       141 RTGKKVAVVGSGPAGLAAADQLNRAGH-TVTVFERE  175 (485)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEecC
Confidence            456899999999999999999999999 78888654

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PLN02730 enoyl-[acyl-carrier-protein] reductase

Probab=88.43  E-value=1  Score=39.20  Aligned_cols=37  Identities=24%  Similarity=0.297  Sum_probs=29.9

Q ss_pred             CCCEEEEECC---CHHHHHHHHHHHHcCCCeEEEEcCChhHH
Q 025895          194 PGSIVAVFGL---GTVGLAVAEGAKAAGASRVIGIDIDPKKF  232 (246)
Q Consensus       194 ~~~~VlI~Ga---g~~G~~ai~~a~~~G~~~vi~~~~~~~~~  232 (246)
                      .++++||+|+   .++|.+.++.+...|+ +|+. .+..+++
T Consensus         8 ~gk~alITGa~~s~GIG~a~A~~la~~Ga-~Vv~-~~~~~~l   47 (303)
T PLN02730          8 RGKRAFIAGVADDNGYGWAIAKALAAAGA-EILV-GTWVPAL   47 (303)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHHCCC-EEEE-EeCcchh
Confidence            4789999988   7899999999999999 7877 4454443

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=88.14  E-value=0.77  Score=42.87  Aligned_cols=36  Identities=25%  Similarity=0.327  Sum_probs=31.1

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      .+..+|+|+|||..|++|+.-++..|+ .|++....+
T Consensus        13 ~~~~~VIVIGAGiaGLsAArqL~~~G~-~V~VLEARd   48 (501)
T KOG0029|consen   13 GKKKKVIVIGAGLAGLSAARQLQDFGF-DVLVLEARD   48 (501)
T ss_pred             cCCCcEEEECCcHHHHHHHHHHHHcCC-ceEEEeccC
Confidence            344689999999999999999999999 798886655

>PRK07985 oxidoreductase; Provisional

Probab=88.09  E-value=1.4  Score=37.85  Aligned_cols=34  Identities=24%  Similarity=0.101  Sum_probs=28.8

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      .++++||+|+ |++|...++.+...|+ +|+.+.++
T Consensus        48 ~~k~vlITGas~gIG~aia~~L~~~G~-~Vi~~~~~   82 (294)
T PRK07985         48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAISYLP   82 (294)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEecCC
Confidence            4578999998 8999999988888999 88887654

>PRK13243 glyoxylate reductase; Reviewed

Probab=88.02  E-value=1.5  Score=38.79  Aligned_cols=37  Identities=32%  Similarity=0.512  Sum_probs=33.2

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~  231 (246)
                      .|++|.|+|.|.+|...++.++..|+ +|++++++.+.
T Consensus       149 ~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~  185 (333)
T PRK13243        149 YGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRTRKP  185 (333)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCCh
Confidence            57899999999999999999999999 89999987543

>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]

Probab=87.79  E-value=1.9  Score=37.86  Aligned_cols=56  Identities=16%  Similarity=0.056  Sum_probs=45.9

Q ss_pred             hhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEc---CChhHHHHHhhcCCCcc
Q 025895          187 WNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID---IDPKKFDRGMSCVSSSK  243 (246)
Q Consensus       187 ~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~---~~~~~~~~~~~lg~~~~  243 (246)
                      .....+++|.++||-.. |.+|...+-++...|+ ++|++-   .+.+|...++++|+.+.
T Consensus        95 e~~G~i~pg~stliEpTSGNtGigLA~~~a~~Gy-k~i~tmP~~ms~Ek~~~l~a~Gaeii  154 (362)
T KOG1252|consen   95 EKKGLITPGKSTLIEPTSGNTGIGLAYMAALRGY-KCIITMPEKMSKEKRILLRALGAEII  154 (362)
T ss_pred             HHcCCccCCceEEEecCCCchHHHHHHHHHHcCc-eEEEEechhhhHHHHHHHHHcCCEEE
Confidence            34567899999999976 8899999999999999 777663   34588999999999854

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=87.68  E-value=1.9  Score=39.37  Aligned_cols=45  Identities=24%  Similarity=0.310  Sum_probs=39.6

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcC
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCV  239 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg  239 (246)
                      ...+++|.|.|.+|...++.+...|. .+++++.++++.+.+++.+
T Consensus       230 ~~~~iiIiG~G~~g~~l~~~L~~~~~-~v~vid~~~~~~~~~~~~~  274 (453)
T PRK09496        230 PVKRVMIVGGGNIGYYLAKLLEKEGY-SVKLIERDPERAEELAEEL  274 (453)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHC
Confidence            45789999999999999999999999 8999999999888777654

>PRK09134 short chain dehydrogenase; Provisional

Probab=87.56  E-value=1.9  Score=35.95  Aligned_cols=38  Identities=21%  Similarity=0.083  Sum_probs=29.3

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcC-ChhHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKF  232 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~-~~~~~  232 (246)
                      .+.++||+|+ |.+|...+..+...|+ +++.+.+ ++++.
T Consensus         8 ~~k~vlItGas~giG~~la~~l~~~g~-~v~~~~~~~~~~~   47 (258)
T PRK09134          8 APRAALVTGAARRIGRAIALDLAAHGF-DVAVHYNRSRDEA   47 (258)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHH
Confidence            4578999998 8999998888888998 7776654 34443

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=87.36  E-value=1.9  Score=35.92  Aligned_cols=34  Identities=32%  Similarity=0.554  Sum_probs=29.2

Q ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       195 ~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      ++++||+|+ |++|...++.+...|+ +|+.+++++
T Consensus        10 ~k~~lItG~~~gIG~a~a~~l~~~G~-~vv~~~~~~   44 (253)
T PRK08993         10 GKVAVVTGCDTGLGQGMALGLAEAGC-DIVGINIVE   44 (253)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC-EEEEecCcc
Confidence            578999988 8999999999888999 888886654

>PRK06701 short chain dehydrogenase; Provisional

Probab=87.35  E-value=1.7  Score=37.19  Aligned_cols=36  Identities=25%  Similarity=0.259  Sum_probs=30.0

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       193 ~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      -.+.++||+|+ |.+|...+..+...|+ +|+.+++++
T Consensus        44 ~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~   80 (290)
T PRK06701         44 LKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDE   80 (290)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            34678999998 8999998888888899 888887764

>PRK12831 putative oxidoreductase; Provisional

Probab=87.33  E-value=1.2  Score=41.12  Aligned_cols=36  Identities=31%  Similarity=0.338  Sum_probs=31.3

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      ...+.+|+|+|+|+.|+.++..++..|+ +|++++..
T Consensus       137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~-~V~v~e~~  172 (464)
T PRK12831        137 EKKGKKVAVIGSGPAGLTCAGDLAKMGY-DVTIFEAL  172 (464)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhCCC-eEEEEecC
Confidence            4567899999999999999999999999 88888754

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=87.23  E-value=0.83  Score=41.10  Aligned_cols=34  Identities=38%  Similarity=0.546  Sum_probs=29.2

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      -.|+|+|+|+.|++++..+...|. +|.++++.+.
T Consensus        19 ~dV~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   52 (415)
T PRK07364         19 YDVAIVGGGIVGLTLAAALKDSGL-RIALIEAQPA   52 (415)
T ss_pred             cCEEEECcCHHHHHHHHHHhcCCC-EEEEEecCCc
Confidence            458999999999999988888999 8999987653

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=87.20  E-value=1.6  Score=40.24  Aligned_cols=34  Identities=26%  Similarity=0.376  Sum_probs=31.2

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      +++|+|+|.|..|++++.+++..|+ .|.+.|.++
T Consensus        14 ~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~   47 (458)
T PRK01710         14 NKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKKS   47 (458)
T ss_pred             CCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCCC
Confidence            5789999999999999999999999 999999765

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=87.19  E-value=1.3  Score=37.19  Aligned_cols=34  Identities=35%  Similarity=0.493  Sum_probs=30.5

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      .+|+|.|+|++|..+++.+..+|..+++.+|...
T Consensus        25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~   58 (240)
T TIGR02355        25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT   58 (240)
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence            6899999999999999999999998998887654

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=87.18  E-value=2.2  Score=29.54  Aligned_cols=35  Identities=31%  Similarity=0.434  Sum_probs=29.0

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI  227 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~  227 (246)
                      -.+++++|+|.|.+|...++.+...+..++.+.++
T Consensus        21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            45688999999999999999999886557777765

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PLN02427 UDP-apiose/xylose synthase

Probab=87.18  E-value=1.7  Score=38.88  Aligned_cols=41  Identities=17%  Similarity=0.294  Sum_probs=32.0

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHc-CCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~-G~~~vi~~~~~~~~~~~~  235 (246)
                      +..+|||+|+ |.+|...++.+... |. +|++++++.++.+.+
T Consensus        13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g~-~V~~l~r~~~~~~~l   55 (386)
T PLN02427         13 KPLTICMIGAGGFIGSHLCEKLMTETPH-KVLALDVYNDKIKHL   55 (386)
T ss_pred             cCcEEEEECCcchHHHHHHHHHHhcCCC-EEEEEecCchhhhhh
Confidence            3357999988 99999888888877 47 899998876655443

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=87.16  E-value=1.4  Score=35.95  Aligned_cols=34  Identities=29%  Similarity=0.379  Sum_probs=30.9

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      ..+|+|+|.|++|..+++.+..+|+.+++.+|..
T Consensus        21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            3689999999999999999999999899999876

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=87.10  E-value=1.5  Score=33.03  Aligned_cols=35  Identities=29%  Similarity=0.416  Sum_probs=30.2

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      ..+|+|.|+|++|...+..+-..|+.+++.+|...
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~   36 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI   36 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence            46899999999999999999999998899987654

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK14967 putative methyltransferase; Provisional

Probab=87.02  E-value=2.7  Score=34.60  Aligned_cols=48  Identities=25%  Similarity=0.347  Sum_probs=37.1

Q ss_pred             hhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       188 ~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      ....++++++||-.|.|. |..++.+++. ++.++++++.+++.++.+++
T Consensus        30 ~~~~~~~~~~vLDlGcG~-G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~   77 (223)
T PRK14967         30 AAEGLGPGRRVLDLCTGS-GALAVAAAAA-GAGSVTAVDISRRAVRSARL   77 (223)
T ss_pred             HhcccCCCCeEEEecCCH-HHHHHHHHHc-CCCeEEEEECCHHHHHHHHH
Confidence            334567888999999976 8888888875 55589999999987775543

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=87.02  E-value=2.4  Score=38.28  Aligned_cols=42  Identities=31%  Similarity=0.376  Sum_probs=35.3

Q ss_pred             hhCCC-CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          188 NTAKV-EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       188 ~~~~~-~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      ...+. -.|.+|.|.|.|.+|..+++.+...|+ +|++++.+..
T Consensus       199 ~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~GA-kvva~sds~g  241 (411)
T COG0334         199 KALGDDLEGARVAVQGFGNVGQYAAEKLHELGA-KVVAVSDSKG  241 (411)
T ss_pred             HHcCCCcCCCEEEEECccHHHHHHHHHHHHcCC-EEEEEEcCCC
Confidence            33443 488999999999999999999999999 8888877765

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=86.98  E-value=0.95  Score=39.44  Aligned_cols=42  Identities=29%  Similarity=0.309  Sum_probs=37.7

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhc
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSC  238 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~l  238 (246)
                      .+|.|+|.|.+|.-++.+|.-+|+ +|...+.+.+|+..+.++
T Consensus       169 ~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd~  210 (371)
T COG0686         169 AKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDDL  210 (371)
T ss_pred             ccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhHh
Confidence            467778999999999999999999 999999999999888763

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=86.90  E-value=1.2  Score=36.42  Aligned_cols=34  Identities=38%  Similarity=0.561  Sum_probs=30.8

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      ..+|+|.|+|++|...++.+-+.|..+++.+|.+
T Consensus        21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            3679999999999999999999999889999888

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK08328 hypothetical protein; Provisional

Probab=86.87  E-value=1.4  Score=36.78  Aligned_cols=35  Identities=40%  Similarity=0.480  Sum_probs=30.6

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      +.+|+|+|+|++|..++..+-..|..+++.+|...
T Consensus        27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~   61 (231)
T PRK08328         27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT   61 (231)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            36799999999999999999999998999987543

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=86.72  E-value=1.7  Score=39.66  Aligned_cols=34  Identities=32%  Similarity=0.508  Sum_probs=30.1

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      +++++||+|+ |++|...++.+...|+ +|+++++.
T Consensus       209 ~g~~vlItGasggIG~~la~~l~~~Ga-~vi~~~~~  243 (450)
T PRK08261        209 AGKVALVTGAARGIGAAIAEVLARDGA-HVVCLDVP  243 (450)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5789999998 9999999999999999 88888774

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=86.71  E-value=1.3  Score=40.93  Aligned_cols=35  Identities=37%  Similarity=0.497  Sum_probs=30.9

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      +.+.+|+|+|+|+.|+.++..+...|. +|++++..
T Consensus       141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~-~V~vie~~  175 (471)
T PRK12810        141 RTGKKVAVVGSGPAGLAAADQLARAGH-KVTVFERA  175 (471)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCC-cEEEEecC
Confidence            456799999999999999999999999 78888765

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=86.61  E-value=1.5  Score=38.36  Aligned_cols=35  Identities=37%  Similarity=0.491  Sum_probs=32.1

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      .|++|.|+|-|.+|...++.++..|. +|+++++..
T Consensus       144 ~gktvGIiG~G~IG~~vA~~~~~fgm-~V~~~d~~~  178 (311)
T PRK08410        144 KGKKWGIIGLGTIGKRVAKIAQAFGA-KVVYYSTSG  178 (311)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhcCC-EEEEECCCc
Confidence            57899999999999999999999999 999998753

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=86.56  E-value=2.3  Score=36.80  Aligned_cols=34  Identities=32%  Similarity=0.419  Sum_probs=28.8

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      .++++||+|+ +++|...+..+...|+ +|+++++.
T Consensus        11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~~   45 (306)
T PRK07792         11 SGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDVA   45 (306)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCC
Confidence            4578999988 8999998888888899 88888764

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=86.54  E-value=2.3  Score=37.43  Aligned_cols=50  Identities=18%  Similarity=0.238  Sum_probs=39.6

Q ss_pred             hhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHhh
Q 025895          187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       187 ~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~-~~vi~~~~~~~~~~~~~~  237 (246)
                      .+..+++++++||-+|+| .|..++.+++..+. ..|++++.+++..+.+++
T Consensus        73 l~~L~i~~g~~VLDIG~G-tG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~  123 (322)
T PRK13943         73 MEWVGLDKGMRVLEIGGG-TGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKR  123 (322)
T ss_pred             HHhcCCCCCCEEEEEeCC-ccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHH
Confidence            355678889999999997 59999999998764 369999999987665543

>PLN02214 cinnamoyl-CoA reductase

Probab=86.51  E-value=1.6  Score=38.42  Aligned_cols=37  Identities=24%  Similarity=0.294  Sum_probs=31.7

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~  231 (246)
                      ++.+|||+|+ |.+|...+..+...|. +|+++.++.++
T Consensus         9 ~~~~vlVTGatGfIG~~l~~~L~~~G~-~V~~~~r~~~~   46 (342)
T PLN02214          9 AGKTVCVTGAGGYIASWIVKILLERGY-TVKGTVRNPDD   46 (342)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCchh
Confidence            4678999998 9999999999889999 89998887654

>PRK06128 oxidoreductase; Provisional

Probab=86.38  E-value=1.7  Score=37.33  Aligned_cols=34  Identities=21%  Similarity=0.183  Sum_probs=28.4

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      .++++||+|+ |++|...+..+...|+ +|+.+.++
T Consensus        54 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~   88 (300)
T PRK06128         54 QGRKALITGADSGIGRATAIAFAREGA-DIALNYLP   88 (300)
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCC
Confidence            4679999988 9999998888888999 78777554

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=86.34  E-value=1.5  Score=38.58  Aligned_cols=32  Identities=50%  Similarity=0.761  Sum_probs=31.0

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Q 025895          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI  227 (246)
Q Consensus       195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~  227 (246)
                      |++|.|+|.|.+|...++.++..|+ +|++.+.
T Consensus       142 gkTvGIiG~G~IG~~va~~l~afgm-~v~~~d~  173 (324)
T COG0111         142 GKTVGIIGLGRIGRAVAKRLKAFGM-KVIGYDP  173 (324)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-eEEEECC
Confidence            7899999999999999999999999 9999998

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=86.33  E-value=1.9  Score=38.05  Aligned_cols=37  Identities=32%  Similarity=0.441  Sum_probs=33.2

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~  231 (246)
                      .+.+|.|+|.|.+|...++.++..|. +|++.++++++
T Consensus       145 ~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~~~~~  181 (330)
T PRK12480        145 KNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDAYPNK  181 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCChhH
Confidence            56789999999999999999999999 99999988754

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=86.07  E-value=3.7  Score=35.34  Aligned_cols=54  Identities=19%  Similarity=0.318  Sum_probs=42.9

Q ss_pred             hhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       182 a~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      .+..+.+..++++|.+||=+|.|- |.+++-+|+..|+ +|++++.|++..+.+++
T Consensus        60 k~~~~~~kl~L~~G~~lLDiGCGW-G~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~  113 (283)
T COG2230          60 KLDLILEKLGLKPGMTLLDIGCGW-GGLAIYAAEEYGV-TVVGVTLSEEQLAYAEK  113 (283)
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCh-hHHHHHHHHHcCC-EEEEeeCCHHHHHHHHH
Confidence            344567889999999999888642 4567778888899 99999999998776654

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=86.07  E-value=1.3  Score=38.47  Aligned_cols=43  Identities=40%  Similarity=0.631  Sum_probs=29.1

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~  236 (246)
                      .+++++||=+|.| .|.+++..++ +|+++|+++|..+.-.+.++
T Consensus       159 ~~~g~~vLDvG~G-SGILaiaA~k-lGA~~v~a~DiDp~Av~~a~  201 (295)
T PF06325_consen  159 VKPGKRVLDVGCG-SGILAIAAAK-LGAKKVVAIDIDPLAVEAAR  201 (295)
T ss_dssp             SSTTSEEEEES-T-TSHHHHHHHH-TTBSEEEEEESSCHHHHHHH
T ss_pred             ccCCCEEEEeCCc-HHHHHHHHHH-cCCCeEEEecCCHHHHHHHH
Confidence            5677888877652 2455544444 58889999999997665544

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PLN03013 cysteine synthase

Probab=86.05  E-value=2.7  Score=38.45  Aligned_cols=56  Identities=16%  Similarity=0.132  Sum_probs=42.3

Q ss_pred             hhCCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEE--cCChhHHHHHhhcCCCcc
Q 025895          188 NTAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGI--DIDPKKFDRGMSCVSSSK  243 (246)
Q Consensus       188 ~~~~~~~~~~VlI~G-ag~~G~~ai~~a~~~G~~~vi~~--~~~~~~~~~~~~lg~~~~  243 (246)
                      +...+++|.+.+|.. +|..|++.+.+++.+|+.-++++  ..+++|++.++.+||++.
T Consensus       167 ~~G~l~pG~~~VVeaSSGN~G~ALA~~a~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi  225 (429)
T PLN03013        167 QKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELV  225 (429)
T ss_pred             HcCCcCCCCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHcCCEEE
Confidence            455567886656664 59999999999999999444444  345679999999999854

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=85.92  E-value=1.8  Score=38.03  Aligned_cols=36  Identities=36%  Similarity=0.610  Sum_probs=33.2

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      .|+++.|+|.|.+|.+.++.++..|+ +|+..+++..
T Consensus       145 ~gktvGIiG~GrIG~avA~r~~~Fgm-~v~y~~~~~~  180 (324)
T COG1052         145 RGKTLGIIGLGRIGQAVARRLKGFGM-KVLYYDRSPN  180 (324)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhcCCC-EEEEECCCCC
Confidence            48899999999999999999999999 9999998864

>PRK06436 glycerate dehydrogenase; Provisional

Probab=85.77  E-value=1.8  Score=37.69  Aligned_cols=35  Identities=26%  Similarity=0.284  Sum_probs=31.8

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      .|++|.|+|-|.+|...++.++.+|+ +|++.+++.
T Consensus       121 ~gktvgIiG~G~IG~~vA~~l~afG~-~V~~~~r~~  155 (303)
T PRK06436        121 YNKSLGILGYGGIGRRVALLAKAFGM-NIYAYTRSY  155 (303)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCC
Confidence            57899999999999999999999999 999998763

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=85.61  E-value=3.6  Score=37.42  Aligned_cols=49  Identities=16%  Similarity=0.158  Sum_probs=42.0

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHH-HHhhcCCC
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD-RGMSCVSS  241 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~-~~~~lg~~  241 (246)
                      -.+.++||+|+|-+|.+++..+...|+..|++.-|+.+|-+ +++++|+.
T Consensus       176 L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~  225 (414)
T COG0373         176 LKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAE  225 (414)
T ss_pred             cccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCe
Confidence            36689999999999999999999999889999999988765 56678854

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=85.48  E-value=2.3  Score=39.95  Aligned_cols=44  Identities=20%  Similarity=0.178  Sum_probs=33.5

Q ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       192 ~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .-.|++|||+|+ |.+|...+.-....+.++++.+++++.++...
T Consensus       247 ~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i  291 (588)
T COG1086         247 MLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLI  291 (588)
T ss_pred             HcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHH
Confidence            346899999998 89997654444444888999999999876544

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=85.47  E-value=0.66  Score=42.43  Aligned_cols=44  Identities=18%  Similarity=0.216  Sum_probs=34.5

Q ss_pred             hhCCCCCCCEEE----EECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHH
Q 025895          188 NTAKVEPGSIVA----VFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKF  232 (246)
Q Consensus       188 ~~~~~~~~~~Vl----I~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~  232 (246)
                      ...++++++.+|    |+|+ |++|.+++|+++..|+ +|+++...+.+.
T Consensus        27 ~l~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~-~v~~~~~~~~~~   75 (450)
T PRK08261         27 PLRRYRPGQPLLDGPVLVGGAGRLAEALAALLAGLGY-DVVANNDGGLTW   75 (450)
T ss_pred             cccCCCCCCCCCCCceEEccCchhHHHHHHHHhhCCC-eeeecCcccccc
Confidence            345567777777    7765 9999999999999999 899887665533

>PLN02256 arogenate dehydrogenase

Probab=85.46  E-value=3.2  Score=36.20  Aligned_cols=53  Identities=13%  Similarity=0.118  Sum_probs=38.8

Q ss_pred             hhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCC
Q 025895          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVS  240 (246)
Q Consensus       186 l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~  240 (246)
                      +.+...-....+|.|+|.|.+|...+..++..|. +|+++++++. .+.+.++|.
T Consensus        27 ~~~~~~~~~~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~~~~-~~~a~~~gv   79 (304)
T PLN02256         27 LQEELEKSRKLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSRSDY-SDIAAELGV   79 (304)
T ss_pred             HhHhhccCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECccH-HHHHHHcCC
Confidence            3344444455689999999999998888888887 8999988864 355555554

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=85.44  E-value=1.7  Score=39.22  Aligned_cols=39  Identities=21%  Similarity=0.248  Sum_probs=33.0

Q ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 025895          192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (246)
Q Consensus       192 ~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~  231 (246)
                      -..+.+|||+|+ |.+|...+..+...|+ +|++++++..+
T Consensus        57 ~~~~~kVLVtGatG~IG~~l~~~Ll~~G~-~V~~l~R~~~~   96 (390)
T PLN02657         57 EPKDVTVLVVGATGYIGKFVVRELVRRGY-NVVAVAREKSG   96 (390)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEechhh
Confidence            345678999998 9999999999888999 89999887654

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=85.43  E-value=2.2  Score=34.83  Aligned_cols=35  Identities=23%  Similarity=0.178  Sum_probs=29.7

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      .+.+|||+|+|.+|...+..+...|+ +|++++...
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~~ga-~V~VIs~~~   43 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLKYGA-HIVVISPEL   43 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEcCCC
Confidence            35789999999999999988888998 888887664

>PRK06932 glycerate dehydrogenase; Provisional

Probab=85.32  E-value=1.7  Score=38.10  Aligned_cols=35  Identities=34%  Similarity=0.497  Sum_probs=31.5

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      .|++|.|+|-|.+|...++.++.+|+ +|+++++..
T Consensus       146 ~gktvgIiG~G~IG~~va~~l~~fg~-~V~~~~~~~  180 (314)
T PRK06932        146 RGSTLGVFGKGCLGTEVGRLAQALGM-KVLYAEHKG  180 (314)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhcCCC-EEEEECCCc
Confidence            46899999999999999999999999 899987653

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=85.21  E-value=2.1  Score=36.04  Aligned_cols=35  Identities=34%  Similarity=0.474  Sum_probs=30.6

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      ..+|+|+|+|++|..++..+...|..++..+|...
T Consensus        32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   66 (245)
T PRK05690         32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT   66 (245)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            37899999999999999999999998888886543

>PLN00198 anthocyanidin reductase; Provisional

Probab=85.17  E-value=2  Score=37.49  Aligned_cols=35  Identities=20%  Similarity=0.134  Sum_probs=29.6

Q ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       195 ~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      +.+|||+|+ |.+|...+..+...|+ +|+++.++.+
T Consensus         9 ~~~vlItG~~GfIG~~l~~~L~~~g~-~V~~~~r~~~   44 (338)
T PLN00198          9 KKTACVIGGTGFLASLLIKLLLQKGY-AVNTTVRDPE   44 (338)
T ss_pred             CCeEEEECCchHHHHHHHHHHHHCCC-EEEEEECCCC
Confidence            578999987 9999999999988999 8887766654

>PRK06487 glycerate dehydrogenase; Provisional

Probab=85.04  E-value=1.9  Score=37.80  Aligned_cols=34  Identities=35%  Similarity=0.448  Sum_probs=31.2

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      .|++|.|+|-|.+|...++.++..|+ +|++.++.
T Consensus       147 ~gktvgIiG~G~IG~~vA~~l~~fgm-~V~~~~~~  180 (317)
T PRK06487        147 EGKTLGLLGHGELGGAVARLAEAFGM-RVLIGQLP  180 (317)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCC
Confidence            56799999999999999999999999 89999865

>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=85.02  E-value=2.6  Score=36.75  Aligned_cols=46  Identities=28%  Similarity=0.271  Sum_probs=39.2

Q ss_pred             CCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          191 KVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       191 ~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      ..++-..++|+|. .++|++...-++..|+ .|.++.++.+|+..+++
T Consensus        29 ~~k~~~hi~itggS~glgl~la~e~~~~ga-~Vti~ar~~~kl~~a~~   75 (331)
T KOG1210|consen   29 KPKPRRHILITGGSSGLGLALALECKREGA-DVTITARSGKKLLEAKA   75 (331)
T ss_pred             ccCccceEEEecCcchhhHHHHHHHHHccC-ceEEEeccHHHHHHHHh
Confidence            3455578899976 8999999999999999 99999999999887764

>PRK06141 ornithine cyclodeaminase; Validated

Probab=84.99  E-value=3.3  Score=36.17  Aligned_cols=44  Identities=20%  Similarity=0.141  Sum_probs=34.9

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHH-HcCCCeEEEEcCChhHHHHHh
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~-~~G~~~vi~~~~~~~~~~~~~  236 (246)
                      ....+|+|+|+|..|...+.... ..+..+|.+.+++++|.+.+.
T Consensus       123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a  167 (314)
T PRK06141        123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALA  167 (314)
T ss_pred             CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH
Confidence            55688999999999999876444 467779999999998866543

>PLN02556 cysteine synthase/L-3-cyanoalanine synthase

Probab=84.90  E-value=3.5  Score=36.98  Aligned_cols=56  Identities=13%  Similarity=0.128  Sum_probs=43.0

Q ss_pred             hhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEc--CChhHHHHHhhcCCCcc
Q 025895          188 NTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID--IDPKKFDRGMSCVSSSK  243 (246)
Q Consensus       188 ~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~--~~~~~~~~~~~lg~~~~  243 (246)
                      ....+++|.+.+|... |..|++.+.+|+.+|+.-++++.  .+.+|++.++.+||++.
T Consensus       103 ~~G~i~pG~~~vV~aSsGN~G~alA~~a~~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi  161 (368)
T PLN02556        103 KKNLITPGKTTLIEPTSGNMGISLAFMAAMKGYKMILTMPSYTSLERRVTMRAFGAELV  161 (368)
T ss_pred             HcCCcCCCCCEEEEeCCchHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEE
Confidence            4455778866677665 99999999999999995555544  34689999999999854

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=84.86  E-value=1.9  Score=37.73  Aligned_cols=37  Identities=19%  Similarity=0.254  Sum_probs=32.7

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~  231 (246)
                      .+++|.|+|.|.+|...++.++..|+ +|++++++.++
T Consensus       135 ~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~~~~~  171 (312)
T PRK15469        135 EDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSRSRKS  171 (312)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCCC
Confidence            57899999999999999999999999 89999876543

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=84.79  E-value=2.4  Score=36.63  Aligned_cols=38  Identities=26%  Similarity=0.337  Sum_probs=29.3

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 025895          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (246)
Q Consensus       193 ~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~  231 (246)
                      -.|+.|||+|+ +++|.+.++=...+|+ +++..|.+++-
T Consensus        36 v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~   74 (300)
T KOG1201|consen   36 VSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQG   74 (300)
T ss_pred             ccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccc
Confidence            36789999988 7999876665556777 78888877753

>TIGR01138 cysM cysteine synthase B

Probab=84.78  E-value=4.3  Score=35.00  Aligned_cols=56  Identities=14%  Similarity=0.130  Sum_probs=42.1

Q ss_pred             hhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHhhcCCCcc
Q 025895          188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRGMSCVSSSK  243 (246)
Q Consensus       188 ~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~--~~~~~~~~~~lg~~~~  243 (246)
                      ....+.++++|+....|..|.+.+.+++.+|..-++.+..  ++.|++.++.+|+++.
T Consensus        52 ~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~  109 (290)
T TIGR01138        52 KRGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERKAAMRAYGAELI  109 (290)
T ss_pred             HcCCCCCCCEEEEECCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCEEE
Confidence            3444566777666566999999999999999955555544  3579999999999854

Alternate name: O-acetylserine (thiol)-lyase

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=84.62  E-value=2.3  Score=36.08  Aligned_cols=34  Identities=32%  Similarity=0.352  Sum_probs=30.0

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI  227 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~  227 (246)
                      -++.+|+|.|-|.+|+.+++++..+|+ +|+++..
T Consensus        36 l~g~~vaIqGfGnVG~~~a~~L~e~Ga-kvvaVsD   69 (254)
T cd05313          36 LKGKRVAISGSGNVAQYAAEKLLELGA-KVVTLSD   69 (254)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            367899999999999999999999999 8886644

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=84.44  E-value=4.7  Score=34.82  Aligned_cols=56  Identities=20%  Similarity=0.176  Sum_probs=38.8

Q ss_pred             ccccchhhhhhhhhhCC-CCCCCEEEEECCCH-HHHHHHHHHHHcCCCeEEEEcCChhHH
Q 025895          175 LGCGVPTGLGAVWNTAK-VEPGSIVAVFGLGT-VGLAVAEGAKAAGASRVIGIDIDPKKF  232 (246)
Q Consensus       175 l~~~~~ta~~~l~~~~~-~~~~~~VlI~Gag~-~G~~ai~~a~~~G~~~vi~~~~~~~~~  232 (246)
                      ++|....... +.+..+ --.|++++|+|.|. +|.-.+.++...|+ +|+++.+....+
T Consensus       138 ~PcTp~ai~~-ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~ga-tVtv~~s~t~~l  195 (286)
T PRK14175        138 VPCTPLGIME-ILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNA-SVTILHSRSKDM  195 (286)
T ss_pred             CCCcHHHHHH-HHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCchhH
Confidence            4444333333 334444 34688999999965 99999999999999 888887754433

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=84.36  E-value=1.6  Score=42.22  Aligned_cols=37  Identities=35%  Similarity=0.293  Sum_probs=32.3

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      .++..+|+|+|+|..|++++..++..|+ +|.++++.+
T Consensus        78 ~~~~~~VlIVGgGIaGLalAlaL~r~Gi-~V~V~Er~~  114 (668)
T PLN02927         78 KKKKSRVLVAGGGIGGLVFALAAKKKGF-DVLVFEKDL  114 (668)
T ss_pred             ccCCCCEEEECCCHHHHHHHHHHHhcCC-eEEEEeccc
Confidence            3566789999999999999999999999 899998754

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=84.30  E-value=3.4  Score=33.76  Aligned_cols=25  Identities=44%  Similarity=0.425  Sum_probs=23.4

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC
Q 025895          195 GSIVAVFGLGTVGLAVAEGAKAAGA  219 (246)
Q Consensus       195 ~~~VlI~Gag~~G~~ai~~a~~~G~  219 (246)
                      +.+|||+|+|.+|..-++.+...|+
T Consensus         9 gk~vlVvGgG~va~rk~~~Ll~~ga   33 (205)
T TIGR01470         9 GRAVLVVGGGDVALRKARLLLKAGA   33 (205)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCC
Confidence            5799999999999999999999999

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK14031 glutamate dehydrogenase; Provisional

Probab=84.22  E-value=2.2  Score=39.18  Aligned_cols=34  Identities=26%  Similarity=0.331  Sum_probs=29.9

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI  227 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~  227 (246)
                      -.+.+|+|.|.|.+|..+++.+...|+ +|+++..
T Consensus       226 l~g~rVaVQGfGNVG~~aA~~L~e~GA-kVVaVSD  259 (444)
T PRK14031        226 LKGKVCLVSGSGNVAQYTAEKVLELGG-KVVTMSD  259 (444)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            367899999999999999999999999 8887544

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=84.22  E-value=3.4  Score=35.66  Aligned_cols=39  Identities=21%  Similarity=0.152  Sum_probs=32.6

Q ss_pred             CCCCEEEEECCCH-HHHHHHHHHHHcCCCeEEEEcCChhHH
Q 025895          193 EPGSIVAVFGLGT-VGLAVAEGAKAAGASRVIGIDIDPKKF  232 (246)
Q Consensus       193 ~~~~~VlI~Gag~-~G~~ai~~a~~~G~~~vi~~~~~~~~~  232 (246)
                      -.|++++|+|.|. +|...+.++...|+ +|.++.+....+
T Consensus       157 l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~~t~~L  196 (283)
T PRK14192        157 LAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHSRTQNL  196 (283)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeCCchhH
Confidence            4678999999976 99999999999999 898887754444

>PRK07340 ornithine cyclodeaminase; Validated

Probab=84.09  E-value=4  Score=35.54  Aligned_cols=43  Identities=19%  Similarity=0.039  Sum_probs=35.6

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHH-cCCCeEEEEcCChhHHHHH
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKA-AGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~-~G~~~vi~~~~~~~~~~~~  235 (246)
                      ....+++|+|+|..|...+..+.. .+.++|.+.+++++|.+.+
T Consensus       123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~  166 (304)
T PRK07340        123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAF  166 (304)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHH
Confidence            456789999999999998888764 6888899999999876644

>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]

Probab=83.99  E-value=0.86  Score=39.56  Aligned_cols=51  Identities=27%  Similarity=0.180  Sum_probs=45.3

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       191 ~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      ...++.++++.|+|..|+.++..++..|+ .|...+...++.+..+.+|+.+
T Consensus       160 gtv~pA~vlv~G~Gvagl~aiata~~lG~-iVt~rdlrm~~Keqv~s~Ga~f  210 (356)
T COG3288         160 GTVSPAKVLVIGAGVAGLAAIATAVRLGA-IVTARDLRMFKKEQVESLGAKF  210 (356)
T ss_pred             ccccchhhhhhhHHHHHHHHHHHHhhcce-EEehhhhhhHHhhhhhhccccc
Confidence            34566788999999999999999999999 9999999999999999999874

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=83.96  E-value=2.4  Score=34.92  Aligned_cols=34  Identities=24%  Similarity=0.381  Sum_probs=30.6

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      ..+|+|+|+|++|...++.+-.+|..+++.+|..
T Consensus        28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            3679999999999999999999999889999877

>PRK08317 hypothetical protein; Provisional

Probab=83.95  E-value=3.6  Score=33.51  Aligned_cols=52  Identities=29%  Similarity=0.403  Sum_probs=41.2

Q ss_pred             hhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCChhHHHHHhhc
Q 025895          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRGMSC  238 (246)
Q Consensus       186 l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G-~~~vi~~~~~~~~~~~~~~l  238 (246)
                      +.+...+.++++||-+|.|. |..+..+++..+ ..++++++.+++.++.+++.
T Consensus        11 ~~~~~~~~~~~~vLdiG~G~-G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~   63 (241)
T PRK08317         11 TFELLAVQPGDRVLDVGCGP-GNDARELARRVGPEGRVVGIDRSEAMLALAKER   63 (241)
T ss_pred             HHHHcCCCCCCEEEEeCCCC-CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Confidence            34567788899999999865 788888888773 24899999999988877654

>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function

Probab=83.95  E-value=12  Score=32.84  Aligned_cols=47  Identities=15%  Similarity=0.085  Sum_probs=32.2

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHH-HcCCCeEEEEcCChhHHHHHhhcCC
Q 025895          193 EPGSIVAVFGL-GTVGLAVAEGAK-AAGASRVIGIDIDPKKFDRGMSCVS  240 (246)
Q Consensus       193 ~~~~~VlI~Ga-g~~G~~ai~~a~-~~G~~~vi~~~~~~~~~~~~~~lg~  240 (246)
                      -..+.|||.+| +-+++..+..++ ..+.-++|.+.+..++ +..+.+|.
T Consensus       134 ~ga~~vvl~SASSKTA~glA~~L~~~~~~~~~vglTS~~N~-~Fve~lg~  182 (314)
T PF11017_consen  134 FGAAQVVLSSASSKTAIGLAYCLKKQRGPPKVVGLTSARNV-AFVESLGC  182 (314)
T ss_pred             CCccEEEEeccchHHHHHHHHHhhccCCCceEEEEecCcch-hhhhccCC
Confidence            34467888887 778888777777 4555589999555444 46666664

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=83.93  E-value=1.8  Score=36.67  Aligned_cols=33  Identities=30%  Similarity=0.301  Sum_probs=28.1

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      -.|+|+|+|+.|+.++..+...|. +|+.++...
T Consensus        26 ~DVvIVGgGpAGl~AA~~la~~G~-~V~liEk~~   58 (257)
T PRK04176         26 VDVAIVGAGPSGLTAAYYLAKAGL-KVAVFERKL   58 (257)
T ss_pred             CCEEEECccHHHHHHHHHHHhCCC-eEEEEecCC
Confidence            458899999999998888888999 888887654

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=83.93  E-value=2.4  Score=32.22  Aligned_cols=32  Identities=31%  Similarity=0.505  Sum_probs=28.8

Q ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       197 ~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      +|+|.|.|++|...+..+-..|.+++..+|..
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD   32 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            48899999999999999999999889998765

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>TIGR00292 thiazole biosynthesis enzyme

Probab=83.89  E-value=1.8  Score=36.66  Aligned_cols=33  Identities=27%  Similarity=0.288  Sum_probs=28.6

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      -.|+|+|+|+.|++++..+...|. +|+.++++.
T Consensus        22 ~DVvIVGgGpAGL~aA~~la~~G~-~V~vlEk~~   54 (254)
T TIGR00292        22 SDVIIVGAGPSGLTAAYYLAKNGL-KVCVLERSL   54 (254)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence            458899999999999998888998 888887764

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK08291 ectoine utilization protein EutC; Validated

Probab=83.87  E-value=4  Score=35.91  Aligned_cols=44  Identities=23%  Similarity=0.078  Sum_probs=35.2

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHH-cCCCeEEEEcCChhHHHHHh
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKA-AGASRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~-~G~~~vi~~~~~~~~~~~~~  236 (246)
                      +...+++|+|+|..+.+.+..+.. .++++|.+.+++++|.+.+.
T Consensus       130 ~~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~  174 (330)
T PRK08291        130 EDASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYA  174 (330)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH
Confidence            445789999999999887776664 67779999999998877554

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=83.83  E-value=2.6  Score=37.78  Aligned_cols=35  Identities=29%  Similarity=0.259  Sum_probs=31.6

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      .+.+|+|+|+|++|..++..+...|..+++.+|..
T Consensus       134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            45689999999999999999999999999999887

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=83.81  E-value=4.9  Score=33.03  Aligned_cols=52  Identities=23%  Similarity=0.263  Sum_probs=41.3

Q ss_pred             hhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHH----HHhhcCC
Q 025895          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD----RGMSCVS  240 (246)
Q Consensus       186 l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~----~~~~lg~  240 (246)
                      +.+...++++++||=+|.| .|..++.+++..+  +|+.+++.++-.+    .++.+|-
T Consensus        64 m~~~L~~~~g~~VLEIGtG-sGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~  119 (209)
T COG2518          64 MLQLLELKPGDRVLEIGTG-SGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGY  119 (209)
T ss_pred             HHHHhCCCCCCeEEEECCC-chHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCC
Confidence            4577889999999999874 4899999999888  7999999887333    3455665

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=83.69  E-value=2.6  Score=35.01  Aligned_cols=35  Identities=34%  Similarity=0.356  Sum_probs=30.5

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      ..+|+|.|.|++|..++..+-.+|..+++.+|...
T Consensus        21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~   55 (228)
T cd00757          21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV   55 (228)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            36899999999999999999999998888886543

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=83.69  E-value=2.4  Score=37.57  Aligned_cols=35  Identities=31%  Similarity=0.350  Sum_probs=31.1

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      +.+|+|+|+|++|..++..+-.+|..+++.+|...
T Consensus        24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            36799999999999999999999998899888764

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=83.61  E-value=2.2  Score=38.07  Aligned_cols=35  Identities=23%  Similarity=0.302  Sum_probs=30.5

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       193 ~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      ..+.+|||+|+ |.+|...+..+...|. +|+++++.
T Consensus        19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~-~V~~v~r~   54 (370)
T PLN02695         19 SEKLRICITGAGGFIASHIARRLKAEGH-YIIASDWK   54 (370)
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHhCCC-EEEEEEec
Confidence            35578999998 9999999999999998 89998864

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=83.46  E-value=2.2  Score=37.64  Aligned_cols=37  Identities=35%  Similarity=0.372  Sum_probs=31.6

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      .+.+.+|+|+|+|..|+.++..+...|. +|+.++..+
T Consensus        15 ~~~~~~VvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~   51 (352)
T PRK12770         15 PPTGKKVAIIGAGPAGLAAAGYLACLGY-EVHVYDKLP   51 (352)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            4567899999999999999999999998 788887754

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=83.39  E-value=1.8  Score=43.72  Aligned_cols=36  Identities=25%  Similarity=0.147  Sum_probs=31.7

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      ..+++|+|+|+|+.|+.|+..+...|+ .|++++..+
T Consensus       304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~-~VtVfE~~~  339 (944)
T PRK12779        304 AVKPPIAVVGSGPSGLINAYLLAVEGF-PVTVFEAFH  339 (944)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCC
Confidence            357899999999999999999999999 898887654

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=83.24  E-value=1.7  Score=40.95  Aligned_cols=33  Identities=39%  Similarity=0.485  Sum_probs=28.7

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      ..|+|+|+|+.|+.++..+...|. +|+++++.+
T Consensus        24 ~dVlIVGaGpaGl~lA~~L~~~G~-~v~viE~~~   56 (547)
T PRK08132         24 HPVVVVGAGPVGLALAIDLAQQGV-PVVLLDDDD   56 (547)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-cEEEEeCCC
Confidence            459999999999998888888999 888887665

>PRK14030 glutamate dehydrogenase; Provisional

Probab=83.15  E-value=2.5  Score=38.79  Aligned_cols=32  Identities=38%  Similarity=0.542  Sum_probs=29.0

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI  225 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~  225 (246)
                      -.+.+|+|.|-|.+|..+++++..+|+ +|+++
T Consensus       226 l~g~~vaIQGfGnVG~~aA~~L~e~Ga-kvVav  257 (445)
T PRK14030        226 IKGKTVAISGFGNVAWGAATKATELGA-KVVTI  257 (445)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEE
Confidence            357899999999999999999999999 88884

>PRK08223 hypothetical protein; Validated

Probab=83.14  E-value=2.4  Score=36.66  Aligned_cols=35  Identities=31%  Similarity=0.277  Sum_probs=31.0

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      ..+|+|+|+|++|..+++.+-++|..++..+|...
T Consensus        27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~   61 (287)
T PRK08223         27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV   61 (287)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            36899999999999999999999998888887654

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=83.07  E-value=2.3  Score=39.01  Aligned_cols=35  Identities=34%  Similarity=0.368  Sum_probs=30.4

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      ..+.+|+|+|+|+.|+.++..+...|+ +|++++..
T Consensus       131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~-~V~vie~~  165 (449)
T TIGR01316       131 STHKKVAVIGAGPAGLACASELAKAGH-SVTVFEAL  165 (449)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEecC
Confidence            356789999999999999999999999 78888764

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=83.06  E-value=2.5  Score=37.39  Aligned_cols=33  Identities=36%  Similarity=0.442  Sum_probs=30.4

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      .+|+|+|+|++|..++..+-..|..+++.+|..
T Consensus        25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D   57 (339)
T PRK07688         25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD   57 (339)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            679999999999999999999999999999875

>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen

Probab=82.94  E-value=4.4  Score=34.89  Aligned_cols=49  Identities=20%  Similarity=0.091  Sum_probs=37.7

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHhhcCCCcc
Q 025895          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRGMSCVSSSK  243 (246)
Q Consensus       195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~--~~~~~~~~~~lg~~~~  243 (246)
                      .++|+..+.|..|.+.+.+++..|++-++.+..  +++|++.++.+|+++.
T Consensus        65 ~~~iv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~Ga~vi  115 (304)
T cd01562          65 AKGVVAASAGNHAQGVAYAAKLLGIPATIVMPETAPAAKVDATRAYGAEVV  115 (304)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEE
Confidence            355666677999999999999999955555543  4568889999999853

Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.

>PRK11761 cysM cysteine synthase B; Provisional

Probab=82.92  E-value=5.6  Score=34.41  Aligned_cols=56  Identities=14%  Similarity=0.116  Sum_probs=42.8

Q ss_pred             hhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHhhcCCCcc
Q 025895          188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRGMSCVSSSK  243 (246)
Q Consensus       188 ~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~--~~~~~~~~~~lg~~~~  243 (246)
                      ....+.++++|+....|..|++.+..++.+|..-++.+..  +++|++.++.+||++.
T Consensus        56 ~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~  113 (296)
T PRK11761         56 KRGEIKPGDTLIEATSGNTGIALAMIAAIKGYRMKLIMPENMSQERRAAMRAYGAELI  113 (296)
T ss_pred             HcCCCCCCCEEEEeCCChHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEE
Confidence            3444567777766666999999999999999955555543  4579999999999854

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=82.90  E-value=4.4  Score=35.61  Aligned_cols=43  Identities=23%  Similarity=0.174  Sum_probs=35.1

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHH-HcCCCeEEEEcCChhHHHHH
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~-~~G~~~vi~~~~~~~~~~~~  235 (246)
                      +...+++|+|+|..+.+.+..+. ..++++|.+.+++.+|.+.+
T Consensus       127 ~~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~  170 (326)
T TIGR02992       127 EDSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEAL  170 (326)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHH
Confidence            45578999999999988777776 57888899999999886644

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK08618 ornithine cyclodeaminase; Validated

Probab=82.85  E-value=5.5  Score=34.95  Aligned_cols=44  Identities=16%  Similarity=0.041  Sum_probs=34.9

Q ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcCChhHHHHHh
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGA-KAAGASRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a-~~~G~~~vi~~~~~~~~~~~~~  236 (246)
                      +..++++|+|+|..+...+..+ ...++++|.+++++++|.+.+.
T Consensus       125 ~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~  169 (325)
T PRK08618        125 EDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFA  169 (325)
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHH
Confidence            4567899999999998776544 4678889999999998876443

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=82.77  E-value=5.1  Score=33.36  Aligned_cols=34  Identities=35%  Similarity=0.522  Sum_probs=29.0

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      .+.+|+|.|-|.+|..+++++...|+ +|+++..+
T Consensus        30 ~~~~v~I~G~G~VG~~~a~~L~~~g~-~vv~v~D~   63 (227)
T cd01076          30 AGARVAIQGFGNVGSHAARFLHEAGA-KVVAVSDS   63 (227)
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            56899999999999999999999999 88855333

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=82.70  E-value=2.7  Score=38.19  Aligned_cols=35  Identities=29%  Similarity=0.477  Sum_probs=32.0

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      .|++|.|+|-|.+|...++.++.+|+ +|++.++..
T Consensus       150 ~gktvGIiG~G~IG~~vA~~~~~fGm-~V~~~d~~~  184 (409)
T PRK11790        150 RGKTLGIVGYGHIGTQLSVLAESLGM-RVYFYDIED  184 (409)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCc
Confidence            57899999999999999999999999 999998754

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=82.57  E-value=2.2  Score=43.21  Aligned_cols=36  Identities=33%  Similarity=0.323  Sum_probs=31.4

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      ..+++|+|+|+|+.|+.++..+...|. +|++++..+
T Consensus       537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~-~VtV~Ek~~  572 (1019)
T PRK09853        537 GSRKKVAVIGAGPAGLAAAYFLARAGH-PVTVFEREE  572 (1019)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCC-eEEEEeccc
Confidence            457889999999999999999999999 888887653

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=82.25  E-value=1.9  Score=40.45  Aligned_cols=33  Identities=33%  Similarity=0.475  Sum_probs=29.0

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      -.|+|+|+|+.|+.++..+...|. +|+++++.+
T Consensus        11 ~dV~IVGaGp~Gl~lA~~L~~~G~-~v~v~Er~~   43 (538)
T PRK06183         11 TDVVIVGAGPVGLTLANLLGQYGV-RVLVLERWP   43 (538)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence            469999999999998888888999 899998775

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=82.18  E-value=3  Score=35.68  Aligned_cols=35  Identities=31%  Similarity=0.479  Sum_probs=30.8

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      .+.+|+|+|.|++|..++..+-..|..+++.+|..
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D   63 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD   63 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            34689999999999999999999998888888765

>TIGR01139 cysK cysteine synthase A

Probab=82.16  E-value=6.8  Score=33.78  Aligned_cols=56  Identities=16%  Similarity=0.143  Sum_probs=41.0

Q ss_pred             hhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHhhcCCCcc
Q 025895          188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRGMSCVSSSK  243 (246)
Q Consensus       188 ~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~--~~~~~~~~~~lg~~~~  243 (246)
                      +.....++++|+-..+|..|.+.+..|+..|+.-++.+..  ++.|++.++.+||++.
T Consensus        50 ~~g~~~~g~~vv~aSsGN~g~alA~~a~~~Gl~~~i~vp~~~~~~k~~~~~~~GA~v~  107 (298)
T TIGR01139        50 KRGLLKPGKTIVEPTSGNTGIALAMVAAARGYKLILTMPETMSIERRKLLKAYGAELV  107 (298)
T ss_pred             HcCCCCCCCEEEEeCCChhHHHHHHHHHHcCCeEEEEeCCccCHHHHHHHHHcCCEEE
Confidence            3344566666644456999999999999999955555543  3568899999999854

This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=82.16  E-value=2.6  Score=38.74  Aligned_cols=36  Identities=31%  Similarity=0.400  Sum_probs=30.8

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      ..+.+|+|+|+|+.|+.++..+...|. +|++++..+
T Consensus       138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~-~V~lie~~~  173 (457)
T PRK11749        138 KTGKKVAVIGAGPAGLTAAHRLARKGY-DVTIFEARD  173 (457)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCC
Confidence            456789999999999999998888998 888887653

>PLN02206 UDP-glucuronate decarboxylase

Probab=81.95  E-value=2.9  Score=38.44  Aligned_cols=34  Identities=35%  Similarity=0.329  Sum_probs=29.7

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      ++.+|||+|+ |.+|...+..+...|. +|+++++.
T Consensus       118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~-~V~~ld~~  152 (442)
T PLN02206        118 KGLRVVVTGGAGFVGSHLVDRLMARGD-SVIVVDNF  152 (442)
T ss_pred             CCCEEEEECcccHHHHHHHHHHHHCcC-EEEEEeCC
Confidence            5578999998 9999999999999999 89988753

>PLN02735 carbamoyl-phosphate synthase

Probab=81.81  E-value=2.4  Score=43.57  Aligned_cols=52  Identities=21%  Similarity=0.323  Sum_probs=38.0

Q ss_pred             cchhhhhhhhhhCCCCCCCEEEEECCCHH-----------HHHHHHHHHHcCCCeEEEEcCChh
Q 025895          178 GVPTGLGAVWNTAKVEPGSIVAVFGLGTV-----------GLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       178 ~~~ta~~~l~~~~~~~~~~~VlI~Gag~~-----------G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      ....+|++......-..-++|||+|+|++           |..++..++.+|+ .|+.++.+++
T Consensus         6 ~~~~~~~~~~~~~~~~~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~-~Vi~vd~np~   68 (1102)
T PLN02735          6 TVTRAWSAATKAGKRTDLKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGY-EVVLINSNPA   68 (1102)
T ss_pred             cceecccccccCCcccCCCEEEEECCCccccccceeecchHHHHHHHHHHcCC-EEEEEeCCcc
Confidence            44557776544333444579999999874           5568999999999 8999988774

>PRK10717 cysteine synthase A; Provisional

Probab=81.79  E-value=6.7  Score=34.40  Aligned_cols=56  Identities=21%  Similarity=0.168  Sum_probs=41.4

Q ss_pred             hhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHhhcCCCcc
Q 025895          188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRGMSCVSSSK  243 (246)
Q Consensus       188 ~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~--~~~~~~~~~~lg~~~~  243 (246)
                      .....+++++|+....|..|++....|+.+|..-++.+..  ++.|++.++.+||++.
T Consensus        57 ~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~~~~~GA~V~  114 (330)
T PRK10717         57 KRGLLKPGGTIVEGTAGNTGIGLALVAAARGYKTVIVMPETQSQEKKDLLRALGAELV  114 (330)
T ss_pred             HcCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Confidence            3344566777666566999999999999999955555533  3468899999999854

>PLN02572 UDP-sulfoquinovose synthase

Probab=81.60  E-value=2.7  Score=38.53  Aligned_cols=34  Identities=29%  Similarity=0.225  Sum_probs=29.0

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcC
Q 025895          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI  227 (246)
Q Consensus       193 ~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~  227 (246)
                      .++.+|||+|+ |.+|...++.+...|+ +|+++++
T Consensus        45 ~~~k~VLVTGatGfIGs~Lv~~L~~~G~-~V~~~d~   79 (442)
T PLN02572         45 SKKKKVMVIGGDGYCGWATALHLSKRGY-EVAIVDN   79 (442)
T ss_pred             ccCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEec
Confidence            45578999988 9999999999988999 8998763

>PRK00364 groES co-chaperonin GroES; Reviewed

Probab=81.57  E-value=3.2  Score=29.58  Aligned_cols=25  Identities=36%  Similarity=0.484  Sum_probs=19.6

Q ss_pred             eEEEEEEcCCCCC---------ccCCCCEEEeeC
Q 025895           71 AAGIVESVGEGVT---------EVQPGDHVIPCY   95 (246)
Q Consensus        71 ~vG~V~~vG~~~~---------~~~~Gd~V~~~~   95 (246)
                      ..|+|+++|++..         .+++||+|+...
T Consensus        36 ~~G~VvaVG~G~~~~~G~~~~~~vk~GD~Vlf~~   69 (95)
T PRK00364         36 QEGEVVAVGPGRRLDNGERVPLDVKVGDKVLFGK   69 (95)
T ss_pred             ceEEEEEECCCeECCCCCEeecccCCCCEEEEcC
Confidence            3699999999642         389999998653

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=81.50  E-value=3  Score=37.37  Aligned_cols=34  Identities=29%  Similarity=0.411  Sum_probs=30.9

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      ..+|+|+|+|++|..++..+...|..+++.+|..
T Consensus        41 ~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D   74 (370)
T PRK05600         41 NARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD   74 (370)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            4689999999999999999999999899998776

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=81.47  E-value=2.3  Score=35.70  Aligned_cols=35  Identities=34%  Similarity=0.495  Sum_probs=30.8

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      ...|+|+|.|++|.+++..+-+.|+.++..+|-.+
T Consensus        30 ~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~   64 (263)
T COG1179          30 QAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDD   64 (263)
T ss_pred             hCcEEEEecCchhHHHHHHHHHcCCCeEEEEeccc
Confidence            46799999999999999999999998888887554

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=81.37  E-value=3.5  Score=36.49  Aligned_cols=39  Identities=15%  Similarity=0.089  Sum_probs=34.3

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~  231 (246)
                      -.+.+|||+|+|-+|.+++..+...|+.+++++.++.++
T Consensus       172 l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~  210 (338)
T PRK00676        172 SKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLT  210 (338)
T ss_pred             ccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccc
Confidence            356899999999999999999999998789999888654

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=81.28  E-value=3.4  Score=34.53  Aligned_cols=34  Identities=41%  Similarity=0.523  Sum_probs=30.5

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      .+|+|+|.|++|..++..+-..|..+++.+|...
T Consensus        12 ~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~   45 (231)
T cd00755          12 AHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV   45 (231)
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            5799999999999999999999999999987654

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=81.16  E-value=2.7  Score=42.66  Aligned_cols=34  Identities=29%  Similarity=0.316  Sum_probs=30.2

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      .+.+|+|+|+|+-|+.|+..+...|+ +|++++..
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~G~-~VTV~Ek~  569 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARAGH-PVTVFEKK  569 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEecc
Confidence            45789999999999999999999999 89888765

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PLN02565 cysteine synthase

Probab=81.15  E-value=6.5  Score=34.52  Aligned_cols=56  Identities=18%  Similarity=0.183  Sum_probs=41.3

Q ss_pred             hhCCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc--CChhHHHHHhhcCCCcc
Q 025895          188 NTAKVEPGSIVAVF-GLGTVGLAVAEGAKAAGASRVIGID--IDPKKFDRGMSCVSSSK  243 (246)
Q Consensus       188 ~~~~~~~~~~VlI~-Gag~~G~~ai~~a~~~G~~~vi~~~--~~~~~~~~~~~lg~~~~  243 (246)
                      +...+.+|.+.+|. ..|..|++.+..++.+|+.-++++.  .++.|++.++.+|+.+.
T Consensus        59 ~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~  117 (322)
T PLN02565         59 EKGLIKPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERRIILLAFGAELV  117 (322)
T ss_pred             HcCCCCCCCcEEEEECCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEE
Confidence            34445777665665 4599999999999999994444443  34579999999999853

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=81.11  E-value=3.4  Score=37.90  Aligned_cols=35  Identities=29%  Similarity=0.237  Sum_probs=30.1

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       193 ~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      +++.+|||+|+ |.+|...+..+...|. +|+++++.
T Consensus       118 ~~~mkILVTGatGFIGs~Lv~~Ll~~G~-~V~~ldr~  153 (436)
T PLN02166        118 RKRLRIVVTGGAGFVGSHLVDKLIGRGD-EVIVIDNF  153 (436)
T ss_pred             cCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            34568999998 9999999999999998 89999864

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=81.09  E-value=3.3  Score=36.89  Aligned_cols=35  Identities=31%  Similarity=0.341  Sum_probs=31.3

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      ..+|+|+|+|++|..++..+-..|..+++.+|...
T Consensus        28 ~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~   62 (355)
T PRK05597         28 DAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT   62 (355)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            36899999999999999999999999999987764

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=81.06  E-value=3.4  Score=37.21  Aligned_cols=36  Identities=22%  Similarity=0.218  Sum_probs=32.2

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      -.+++|.|+|.|.+|...++.++.+|+ +|++.+...
T Consensus       114 l~gktvGIIG~G~IG~~va~~l~a~G~-~V~~~Dp~~  149 (381)
T PRK00257        114 LAERTYGVVGAGHVGGRLVRVLRGLGW-KVLVCDPPR  149 (381)
T ss_pred             cCcCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCcc
Confidence            467899999999999999999999999 999998643

>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below)

Probab=81.00  E-value=1.9  Score=31.66  Aligned_cols=36  Identities=11%  Similarity=0.351  Sum_probs=30.0

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHH
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF  232 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~  232 (246)
                      ++|||.|.|.++.-+++.++.+|+ +++++-.++++.
T Consensus         3 kkvLIanrGeia~r~~ra~r~~Gi-~tv~v~s~~d~~   38 (110)
T PF00289_consen    3 KKVLIANRGEIAVRIIRALRELGI-ETVAVNSNPDTV   38 (110)
T ss_dssp             SEEEESS-HHHHHHHHHHHHHTTS-EEEEEEEGGGTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCC-cceeccCchhcc
Confidence            589999999999999999999999 777776777654

CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....

>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts

Probab=80.92  E-value=3.9  Score=29.02  Aligned_cols=25  Identities=36%  Similarity=0.429  Sum_probs=19.9

Q ss_pred             eEEEEEEcCCCC---------CccCCCCEEEeeC
Q 025895           71 AAGIVESVGEGV---------TEVQPGDHVIPCY   95 (246)
Q Consensus        71 ~vG~V~~vG~~~---------~~~~~Gd~V~~~~   95 (246)
                      ..|+|+++|++.         ..+++||+|+...
T Consensus        35 ~~g~VvAVG~g~~~~~g~~~~~~vk~GD~Vl~~~   68 (93)
T cd00320          35 QEGKVVAVGPGRRNENGERVPLSVKVGDKVLFPK   68 (93)
T ss_pred             eEEEEEEECCCeECCCCCCccccccCCCEEEECC
Confidence            469999999973         2489999998553

It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=80.83  E-value=3.3  Score=41.81  Aligned_cols=35  Identities=26%  Similarity=0.273  Sum_probs=31.7

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      ..+++|+|+|+|+.|+.++..+...|+ +|++++..
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh-~Vtv~E~~  415 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRSGH-NVTAIDGL  415 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCC-eEEEEccc
Confidence            467899999999999999999999999 99999864

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=80.63  E-value=3.8  Score=36.89  Aligned_cols=35  Identities=23%  Similarity=0.327  Sum_probs=31.8

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      -.+++|.|+|.|.+|...++.++.+|+ +|++.+..
T Consensus       114 L~gktvGIIG~G~IG~~vA~~l~a~G~-~V~~~dp~  148 (378)
T PRK15438        114 LHDRTVGIVGVGNVGRRLQARLEALGI-KTLLCDPP  148 (378)
T ss_pred             cCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCc
Confidence            367899999999999999999999999 99999753

>PRK12831 putative oxidoreductase; Provisional

Probab=80.59  E-value=4.9  Score=37.15  Aligned_cols=36  Identities=33%  Similarity=0.336  Sum_probs=31.0

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      ...+++|+|+|+|.+|.-++..+..+|+ +|..+.+.
T Consensus       278 ~~~gk~VvVIGgG~va~d~A~~l~r~Ga-~Vtlv~r~  313 (464)
T PRK12831        278 IKVGKKVAVVGGGNVAMDAARTALRLGA-EVHIVYRR  313 (464)
T ss_pred             ccCCCeEEEECCcHHHHHHHHHHHHcCC-EEEEEeec
Confidence            4578999999999999999999999999 57777653

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=80.59  E-value=4.5  Score=32.66  Aligned_cols=47  Identities=21%  Similarity=0.144  Sum_probs=33.5

Q ss_pred             hhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       188 ~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      +.....++.+||-+|.|. |..++.+++. |+ +|+++|.+++-++.+++
T Consensus        24 ~~l~~~~~~~vLDiGcG~-G~~a~~La~~-g~-~V~gvD~S~~~i~~a~~   70 (197)
T PRK11207         24 EAVKVVKPGKTLDLGCGN-GRNSLYLAAN-GF-DVTAWDKNPMSIANLER   70 (197)
T ss_pred             HhcccCCCCcEEEECCCC-CHHHHHHHHC-CC-EEEEEeCCHHHHHHHHH
Confidence            344455678898888753 5666777764 77 99999999986665543

>TIGR01136 cysKM cysteine synthases

Probab=80.53  E-value=8.9  Score=33.11  Aligned_cols=56  Identities=16%  Similarity=0.148  Sum_probs=41.7

Q ss_pred             hhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHhhcCCCcc
Q 025895          188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRGMSCVSSSK  243 (246)
Q Consensus       188 ~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~--~~~~~~~~~~lg~~~~  243 (246)
                      ......++++|+-...|..|++....|+.+|.+-++.+..  ++.|++.++.+|+++.
T Consensus        51 ~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~v~  108 (299)
T TIGR01136        51 KRGLLKPGDTIIEATSGNTGIALAMVAAAKGYKLILTMPETMSLERRKLLRAYGAELI  108 (299)
T ss_pred             HcCCCCCCCEEEEeCCChHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEE
Confidence            3344566676654456999999999999999965666654  3578899999999854

This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.

>PTZ00188 adrenodoxin reductase; Provisional

Probab=80.52  E-value=3.9  Score=38.17  Aligned_cols=36  Identities=19%  Similarity=0.147  Sum_probs=29.1

Q ss_pred             CCCEEEEECCCHHHHHHHH-HHHHcCCCeEEEEcCChh
Q 025895          194 PGSIVAVFGLGTVGLAVAE-GAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~-~a~~~G~~~vi~~~~~~~  230 (246)
                      ...+|+|+|+|+.|+.++. +++..|. .|.++++.+.
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~-~VtlfEk~p~   74 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERV-KVDIFEKLPN   74 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCC-eEEEEecCCC
Confidence            4578999999999999877 6777788 7888877653

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=80.36  E-value=4.1  Score=39.86  Aligned_cols=39  Identities=36%  Similarity=0.490  Sum_probs=34.1

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .+|.|+|+|.+|...++++-..|+ +|+.+|.+++.++..
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~  352 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLG  352 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHHH
Confidence            579999999999998888888899 999999999887643

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=80.32  E-value=5.3  Score=36.69  Aligned_cols=36  Identities=31%  Similarity=0.281  Sum_probs=30.7

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      ...+++|+|+|+|.+|+-++..+..+|. +|.++.+.
T Consensus       269 ~~~gk~VvVIGgG~~a~d~A~~l~~~G~-~Vtlv~~~  304 (449)
T TIGR01316       269 VYAGKSVVVIGGGNTAVDSARTALRLGA-EVHCLYRR  304 (449)
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHHHcCC-EEEEEeec
Confidence            3467899999999999999999999999 67777654

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=80.31  E-value=2.7  Score=38.68  Aligned_cols=34  Identities=29%  Similarity=0.295  Sum_probs=29.4

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      -.|+|+|+|+.|.+++..+...|. +|..++....
T Consensus        40 ~DViIVGaGPAG~~aA~~LA~~G~-~VlllEr~~~   73 (450)
T PLN00093         40 LRVAVIGGGPAGACAAETLAKGGI-ETFLIERKLD   73 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCC
Confidence            469999999999999988888999 8999987653

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=80.14  E-value=3.5  Score=39.89  Aligned_cols=39  Identities=23%  Similarity=0.388  Sum_probs=31.9

Q ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHc-CCCeEEEEcCChhH
Q 025895          192 VEPGSIVAVFGL-GTVGLAVAEGAKAA-GASRVIGIDIDPKK  231 (246)
Q Consensus       192 ~~~~~~VlI~Ga-g~~G~~ai~~a~~~-G~~~vi~~~~~~~~  231 (246)
                      .+.+.+|||+|+ |.+|...++.+... |. +|+++++.+.+
T Consensus       312 ~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~-~V~~l~r~~~~  352 (660)
T PRK08125        312 AKRRTRVLILGVNGFIGNHLTERLLRDDNY-EVYGLDIGSDA  352 (660)
T ss_pred             hhcCCEEEEECCCchHHHHHHHHHHhCCCc-EEEEEeCCchh
Confidence            466789999998 99999999888765 67 89999876643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	246
4dl9_A	396	Crystal Structure Of S-nitrosoglutathione Reductase		1e-123
3uko_A	378	Crystal Structure Of S-Nitrosoglutathione Reductase		1e-119
3qj5_A	374	S-Nitrosoglutathione Reductase (Gsnor) In Complex W		1e-80
1mc5_A	374	Ternary Complex Of Human Glutathione-Dependent Form		1e-80
1teh_A	373	Structure Of Human Liver Chichi Alcohol Dehydrogena		2e-80
2fzw_A	373	Structure Of The Binary Complex Of The E67l Mutant		1e-79
3cos_A	381	Crystal Structure Of Human Class Ii Alcohol Dehydro		8e-73
1cdo_A	374	Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Co		6e-70
1e3l_A	376	P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase		6e-65
1e3e_A	376	Mouse Class Ii Alcohol Dehydrogenase Complex With N		9e-64
1hdy_A	374	Three-Dimensional Structures Of Three Human Alcohol		2e-63
1p0c_A	373	Crystal Structure Of The Nadp(H)-Dependent Vertebra		4e-63
1agn_A	373	X-Ray Structure Of Human Sigma Alcohol Dehydrogenas		7e-63
1hdx_A	374	Three-Dimensional Structures Of Three Human Alcohol		1e-62
1htb_A	374	Crystallization Of Human Beta3 Alcohol Dehydrogenas		1e-62
1d1t_A	373	Mutant Of Human Sigma Alcohol Dehydrogenase With Le		2e-62
1hdz_A	374	Three-Dimensional Structures Of Three Human Alcohol		2e-62
1qlh_A	374	Horse Liver Alcohol Dehydrogenase Complexed To Nad		3e-62
1n8k_A	374	Horse Liver Alcohol Dehydrogenase Val292thr Mutant		4e-62
6adh_A	374	Structure Of Triclinic Ternary Complex Of Horse Liv		4e-62
3oq6_A	374	Horse Liver Alcohol Dehydrogenase A317c Mutant Comp		4e-62
1ju9_A	374	Horse Liver Alcohol Dehydrogenase Val292ser Mutant		4e-62
1axe_A	374	Crystal Structure Of The Active-Site Mutant Phe93->		7e-62
1axg_A	374	Crystal Structure Of The Val203->ala Mutant Of Live		1e-61
1qv6_A	374	Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG		2e-61
1mgo_A	374	Horse Liver Alcohol Dehydrogenase Phe93ala Mutant L		2e-61
1a71_A	374	Ternary Complex Of An Active Site Double Mutant Of		2e-61
1ee2_B	373	The Structure Of Steroid-Active Alcohol Dehydrogena		6e-61
1ht0_A	374	Human Gamma-2 Alcohol Dehydrogense Length = 374		1e-60
1ee2_A	373	The Structure Of Steroid-Active Alcohol Dehydrogena		2e-60
1hso_A	374	Human Alpha Alcohol Dehydrogenase (Adh1a) Length =		2e-60
1f8f_A	371	Crystal Structure Of Benzyl Alcohol Dehydrogenase F		2e-25
3two_A	348	The Crystal Structure Of Cad From Helicobacter Pylo		5e-16
1rjw_A	339	Crystal Structure Of Nad(+)-Dependent Alcohol Dehyd		5e-15
2h6e_A	344	Crystal Structure Of The D-Arabinose Dehydrogenase		7e-15
3pii_A	339	Crystal Structure Of Mutant Of Ht- Alcohol Dehydrog		8e-15
1llu_A	342	The Ternary Complex Of Pseudomonas Aeruginosa Alcoh		8e-15
3meq_A	365	Crystal Structure Of Alcohol Dehydrogenase From Bru		2e-14
3s1l_A	340	Crystal Structure Of Apo-Form Furx Length = 340		7e-14
4ilk_A	359	Crystal Structure Of Short Chain Alcohol Dehydrogen		2e-13
2hcy_A	347	Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevi		8e-13
1h2b_A	359	Crystal Structure Of The Alcohol Dehydrogenase From		1e-12
1uuf_A	369	Crystal Structure Of A Zinc-Type Alcohol Dehydrogen		1e-12
2eih_A	343	Crystal Structure Of Nad-Dependent Alcohol Dehydrog		2e-11
1e3j_A	352	Ketose Reductase (Sorbitol Dehydrogenase) From Silv		9e-11
2xaa_A	345	Alcohol Dehydrogenase Adh-'a' From Rhodococcus Rube		3e-10
4eex_A	348	Crystal Structure Of Lactococcus Lactis Alcohol Deh		3e-10
4eez_A	348	Crystal Structure Of Lactococcus Lactis Alcohol Deh		4e-10
2eer_A	347	Structural Study Of Project Id St2577 From Sulfolob		9e-10
1vj0_A	380	Crystal Structure Of Alcohol Dehydrogenase (Tm0436)		1e-09
2dq4_A	343	Crystal Structure Of Threonine 3-Dehydrogenase Leng		1e-09
3gfb_A	350	L-Threonine Dehydrogenase (Tktdh) From The Hyperthe		7e-09
1r37_A	347	Alcohol Dehydrogenase From Sulfolobus Solfataricus		1e-08
1nto_A	347	N249y Mutant Of Alcohol Dehydrogenase From The Arch		1e-08
1jvb_A	347	Alcohol Dehydrogenase From The Archaeon Sulfolobus		2e-08
3i4c_A	347	Crystal Structure Of Sulfolobus Solfataricus Adh(Ss		2e-08
4a2c_A	346	Crystal Structure Of Galactitol-1-Phosphate Dehydro		4e-08
2dfv_A	347	Hyperthermophilic Threonine Dehydrogenase From Pyro		4e-08
2d8a_A	348	Crystal Structure Of Ph0655 From Pyrococcus Horikos		4e-08
1pl7_A	356	Human Sorbitol Dehydrogenase (Apo) Length = 356		5e-08
4ej6_A	370	Crystal Structure Of A Putative Zinc-Binding Dehydr		5e-08
1yqd_A	366	Sinapyl Alcohol Dehydrogenase Complexed With Nadp+		1e-07
1pl6_A	356	Human SdhNADHINHIBITOR COMPLEX Length = 356		1e-07
3qe3_A	355	Sheep Liver Sorbitol Dehydrogenase Length = 355		2e-07
2cd9_A	366	Sulfolobus Solfataricus Glucose Dehydrogenase 1 - A		3e-07
2cdb_A	366	Sulfolobus Solfataricus Glucose Dehydrogenase 1 In		1e-06
1kol_A	398	Crystal Structure Of Formaldehyde Dehydrogenase Len		2e-06
3fpl_A	351	Chimera Of Alcohol Dehydrogenase By Exchange Of The		2e-06
1jqb_A	351	Alcohol Dehydrogenase From Clostridium Beijerinckii		5e-06
1ped_A	351	Bacterial Secondary Alcohol Dehydrogenase (Apo-Form		1e-05
1qor_A	327	Crystal Structure Of Escherichia Coli Quinone Oxido		1e-05
2nvb_A	352	Contribution Of Pro275 To The Thermostability Of Th		2e-05
1ykf_A	352	Nadp-Dependent Alcohol Dehydrogenase From Thermoana		2e-05
2b83_A	351	A Single Amino Acid Substitution In The Clostridium		2e-05
3jyl_A	325	Crystal Structures Of Pseudomonas Syringae Pv. Toma		3e-05
3ftn_A	352	Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDRO		4e-05
3m6i_A	363	L-Arabinitol 4-Dehydrogenase Length = 363		4e-05
3fsr_A	352	Chimera Of Alcohol Dehydrogenase By Exchange Of The		9e-05
2b5w_A	357	Crystal Structure Of D38c Glucose Dehydrogenase Mut		1e-04
1wly_A	333	Crystal Structure Of 2-haloacrylate Reductase Lengt		3e-04
2dph_A	398	Crystal Structure Of Formaldehyde Dismutase Length		4e-04

>pdb|4DL9|A Chain A, Crystal Structure Of S-nitrosoglutathione Reductase From Tomato (solanum Lycopersicum) In Complex With Nad+ Length = 396

Iteration: 1
 Score =  436 bits (1120), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 208/233 (89%), Positives = 216/233 (92%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           +T+GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVR+K+L+TALCHTDAYTWSGKDPEG
Sbjct: 19  ATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKVLYTALCHTDAYTWSGKDPEG 78
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           LFPC+LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR ATG
Sbjct: 79  LFPCVLGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAATG 138
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP APL+KVCLLGCGVPT
Sbjct: 139 VGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPVAPLEKVCLLGCGVPT 198
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
           GLGAVWNTAKVEPGSIVAVFGLGTV             SR+IGIDID KKFDR
Sbjct: 199 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRIIGIDIDSKKFDR 251

>pdb|3UKO|A Chain A, Crystal Structure Of S-Nitrosoglutathione Reductase From Arabidopsis Thaliana, Complex With Nadh Length = 378

Iteration: 1
 Score =  423 bits (1087), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 203/232 (87%), Positives = 213/232 (91%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           +T+GQVITCKAAVA+EPNKPLVIEDVQVAPPQAGEVRIKIL+TALCHTDAYTWSGKDPEG
Sbjct: 1   ATQGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDPEG 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           LFPCILGHEAAGIVESVGEGVTEVQ GDHVIPCYQAECRECKFCKSGKTNLCGKVR ATG
Sbjct: 61  LFPCILGHEAAGIVESVGEGVTEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATG 120
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G+MMNDRKSRFS+NGKPIYHFMGTSTFSQYTVVHDVSVAKIDP APLDKVCLLGCGVPT
Sbjct: 121 VGIMMNDRKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTAPLDKVCLLGCGVPT 180
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFD 233
           GLGAVWNTAKVEPGS VA+FGLGTV             SR+IGIDID KK++
Sbjct: 181 GLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYE 232

>pdb|3QJ5|A Chain A, S-Nitrosoglutathione Reductase (Gsnor) In Complex With N6022 Length = 374

Iteration: 1
 Score =  295 bits (756), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 149/229 (65%), Positives = 173/229 (75%), Gaps = 1/229 (0%)
Query: 6   QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC 65
           +VI CKAAVAWE  KPL IE+++VAPP+A EVRIKI+ TA+CHTDAYT SG DPEG FP 
Sbjct: 4   EVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPV 63
Query: 66  ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
           ILGHE AGIVESVGEGVT+++ GD VIP Y  +C ECKFC + KTNLC K+R   G G +
Sbjct: 64  ILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG-L 122
Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
           M D  SRF+  GK I H+MGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG GA
Sbjct: 123 MPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGA 182
Query: 186 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
             NTAK+EPGS+ AVFGLG V             SR+IG+DI+  KF R
Sbjct: 183 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFAR 231

>pdb|1MC5|A Chain A, Ternary Complex Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With S-(Hydroxymethyl)glutathione And Nadh Length = 374

Iteration: 1
 Score =  295 bits (756), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 149/229 (65%), Positives = 173/229 (75%), Gaps = 1/229 (0%)
Query: 6   QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC 65
           +VI CKAAVAWE  KPL IE+++VAPP+A EVRIKI+ TA+CHTDAYT SG DPEG FP 
Sbjct: 4   EVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPV 63
Query: 66  ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
           ILGHE AGIVESVGEGVT+++ GD VIP Y  +C ECKFC + KTNLC K+R   G G +
Sbjct: 64  ILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG-L 122
Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
           M D  SRF+  GK I H+MGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG GA
Sbjct: 123 MPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGA 182
Query: 186 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
             NTAK+EPGS+ AVFGLG V             SR+IG+DI+  KF R
Sbjct: 183 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFAR 231

>pdb|1TEH|A Chain A, Structure Of Human Liver Chichi Alcohol Dehydrogenase (A Glutathione- Dependent Formaldehyde Dehydrogenase) Length = 373

Iteration: 1
 Score =  295 bits (755), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 149/229 (65%), Positives = 173/229 (75%), Gaps = 1/229 (0%)
Query: 6   QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC 65
           +VI CKAAVAWE  KPL IE+++VAPP+A EVRIKI+ TA+CHTDAYT SG DPEG FP 
Sbjct: 3   EVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPV 62
Query: 66  ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
           ILGHE AGIVESVGEGVT+++ GD VIP Y  +C ECKFC + KTNLC K+R   G G +
Sbjct: 63  ILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG-L 121
Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
           M D  SRF+  GK I H+MGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG GA
Sbjct: 122 MPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGA 181
Query: 186 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
             NTAK+EPGS+ AVFGLG V             SR+IG+DI+  KF R
Sbjct: 182 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFAR 230

>pdb|2FZW|A Chain A, Structure Of The Binary Complex Of The E67l Mutant Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With Nad(H) Length = 373

Iteration: 1
 Score =  292 bits (748), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 148/229 (64%), Positives = 172/229 (75%), Gaps = 1/229 (0%)
Query: 6   QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC 65
           +VI CKAAVAWE  KPL IE+++VAPP+A EVRIKI+ TA+CHTDAYT SG DPEG FP 
Sbjct: 3   EVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPV 62
Query: 66  ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
           ILGH  AGIVESVGEGVT+++ GD VIP Y  +C ECKFC + KTNLC K+R   G G +
Sbjct: 63  ILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG-L 121
Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
           M D  SRF+  GK I H+MGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG GA
Sbjct: 122 MPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGA 181
Query: 186 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
             NTAK+EPGS+ AVFGLG V             SR+IG+DI+  KF R
Sbjct: 182 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFAR 230

>pdb|3COS|A Chain A, Crystal Structure Of Human Class Ii Alcohol Dehydrogenase (Adh4) In Complex With Nad And Zn Length = 381

Iteration: 1
 Score =  270 bits (689), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 137/235 (58%), Positives = 164/235 (69%), Gaps = 3/235 (1%)
Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
           M T+G+VI CKAA+AWE  KPL IE+V+VAPP+A EVRI+I+ T+LCHTDA     K   
Sbjct: 2   MGTKGKVIKCKAAIAWEAGKPLCIEEVEVAPPKAHEVRIQIIATSLCHTDATVIDSKFEG 61
Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKV---R 117
             FP I+GHEAAGIVES+G GVT V+PGD VIP Y   CR+CKFC S  TNLCGK+   +
Sbjct: 62  LAFPVIVGHEAAGIVESIGPGVTNVKPGDKVIPLYAPLCRKCKFCLSPLTNLCGKISNLK 121
Query: 118 GATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGC 177
                  +M D+ SRF+  GKP+YHF GTSTFSQYTVV D+++AKID  A L++VCLLGC
Sbjct: 122 SPASDQQLMEDKTSRFTCKGKPVYHFFGTSTFSQYTVVSDINLAKIDDDANLERVCLLGC 181
Query: 178 GVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKF 232
           G  TG GA  N AKV PGS  AVFGLG V             SR+IGIDI+ +KF
Sbjct: 182 GFSTGYGAAINNAKVTPGSTCAVFGLGGVGLSAVMGCKAAGASRIIGIDINSEKF 236

>pdb|1CDO|A Chain A, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Complexed With Nicotinamide Adenine Dinucleotide (Nad), And Zinc Length = 374

Iteration: 1
 Score =  260 bits (664), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 133/235 (56%), Positives = 170/235 (72%), Gaps = 5/235 (2%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAY-TWSGKDPE 60
           +T G+VI CKAAVAWE NKPLVIE+++V  P A E+RIKI+ T +CHTD Y  + GK  +
Sbjct: 1   ATVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKD 60
Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRG-A 119
           G FP +LGHE AGIVESVG GVTE QPG+ VIP + ++C EC+FC+S KTN C  V+G A
Sbjct: 61  G-FPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQC--VKGWA 117
Query: 120 TGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGV 179
             +  +M+ +++RF+  G+ +  F+GTSTFSQYTVV+ ++VAKIDP APLD VCLLGCGV
Sbjct: 118 NESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGV 177
Query: 180 PTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
            TG GA  NTAKVEPGS  AVFGLG V              R+I +D++P KF++
Sbjct: 178 STGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEK 232

>pdb|1E3L|A Chain A, P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376

Iteration: 1
 Score =  243 bits (621), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 122/238 (51%), Positives = 162/238 (68%), Gaps = 8/238 (3%)
Query: 3   TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-- 60
           T+G+VI CKAA+AW+   PL IE+++V+PP+A EVRI+++ T +CHTD    +  DP+  
Sbjct: 2   TQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCHTDI---NATDPKKK 58
Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
            LFP +LGHE AGIVESVG GVT  +PGD VIP +  +C+ CK C S  TNLCGK+R   
Sbjct: 59  ALFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFK 118
Query: 121 GAGV---MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGC 177
              +   +M DR SRF+  G+ IYHFMG S+FSQYTVV + ++A++D +A L++VCL+GC
Sbjct: 119 YPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGC 178
Query: 178 GVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRG 235
           G  +G GA  NTAKV PGS  AVFGLG V             SR+I IDI+ +KF + 
Sbjct: 179 GFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKA 236

>pdb|1E3E|A Chain A, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376

Iteration: 1
 Score =  239 bits (610), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 121/238 (50%), Positives = 161/238 (67%), Gaps = 8/238 (3%)
Query: 3   TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-- 60
           T+G+VI CKAA+AW+   PL IE+++V+PP+A EVRI+++ T +C TD    +  DP+  
Sbjct: 2   TQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDI---NATDPKKK 58
Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
            LFP +LGHE AGIVESVG GVT  +PGD VIP +  +C+ CK C S  TNLCGK+R   
Sbjct: 59  ALFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFK 118
Query: 121 GAGV---MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGC 177
              +   +M DR SRF+  G+ IYHFMG S+FSQYTVV + ++A++D +A L++VCL+GC
Sbjct: 119 YPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGC 178
Query: 178 GVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRG 235
           G  +G GA  NTAKV PGS  AVFGLG V             SR+I IDI+ +KF + 
Sbjct: 179 GFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKA 236

>pdb|1HDY|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score =  238 bits (608), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 128/248 (51%), Positives = 160/248 (64%), Gaps = 7/248 (2%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IEDV+VAPP+A EVRIK++   +CHTD +  SG     
Sbjct: 1   STAGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICHTDDHVVSGNLVTP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P ILGHEAAGIVESVGEGVT V+PGD VIP +  +C +C+ CK+ ++N C K      
Sbjct: 61  L-PVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGNP 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G +  D   RF+  GKPI+HF+GTSTFSQYTVV + +VAKID  +PL+KVCL+GCG  T
Sbjct: 120 RGTL-QDGTRRFTCRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFST 178
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR-----GM 236
           G G+  N AKV PGS  AVFGLG V             +R+I +DI+  KF +       
Sbjct: 179 GYGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGAT 238
Query: 237 SCVSSSKY 244
            C++   Y
Sbjct: 239 ECINPQDY 246

>pdb|1P0C|A Chain A, Crystal Structure Of The Nadp(H)-Dependent Vertebrate Alcohol Dehydrogenase (Adh8) Length = 373

Iteration: 1
 Score =  237 bits (605), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 125/236 (52%), Positives = 155/236 (65%), Gaps = 3/236 (1%)
Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
           M T G+ ITCKAAVAWEP+KPL +E + VAPP+A EVRIKIL + +C +D+       P 
Sbjct: 1   MCTAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPS 60
Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
             FP ILGHEA G+VES+G GVT V+PGD VIP +  +C  C+ CKS  +N C K     
Sbjct: 61  K-FPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGA 119
Query: 121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
             G +M D  SRF+  GKPIY+ MGTSTF++YTVV D++VAKIDP+APL+  CL+GCG  
Sbjct: 120 KTG-LMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKAPLES-CLIGCGFA 177
Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRGM 236
           TG GA  NTAKV PGS  AVFGLG V             SR+IG+     KF + +
Sbjct: 178 TGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI 233

>pdb|1AGN|A Chain A, X-Ray Structure Of Human Sigma Alcohol Dehydrogenase Length = 373

Iteration: 1
 Score =  236 bits (603), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 123/235 (52%), Positives = 156/235 (66%), Gaps = 3/235 (1%)
Query: 3   TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL 62
           T G+VI CKAAV WE  +P  IE+++VAPP+  EVRIKIL T +C TD +   G      
Sbjct: 2   TAGKVIKCKAAVLWEQKQPFSIEEIEVAPPKTKEVRIKILATGICRTDDHVIKGTMVSK- 60
Query: 63  FPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGA 122
           FP I+GHEA GIVES+GEGVT V+PGD VIP +  +CREC  C++   NLC +    TG 
Sbjct: 61  FPVIVGHEATGIVESIGEGVTTVKPGDKVIPLFLPQCRECNACRNPDGNLCIR-SDITGR 119
Query: 123 GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTG 182
           GV+  D  +RF+  GKP++HFM TSTF++YTVV + SVAKID  AP +KVCL+GCG  TG
Sbjct: 120 GVLA-DGTTRFTCKGKPVHHFMNTSTFTEYTVVDESSVAKIDDAAPPEKVCLIGCGFSTG 178
Query: 183 LGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRGMS 237
            GA   T KV+PGS   VFGLG V             SR+IGID++  KF++ M+
Sbjct: 179 YGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMA 233

>pdb|1HDX|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score =  236 bits (601), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 127/248 (51%), Positives = 159/248 (64%), Gaps = 7/248 (2%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IEDV+VAPP+A EVRIK++   +C TD +  SG     
Sbjct: 1   STAGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICRTDDHVVSGNLVTP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P ILGHEAAGIVESVGEGVT V+PGD VIP +  +C +C+ CK+ ++N C K      
Sbjct: 61  L-PVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGNP 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G +  D   RF+  GKPI+HF+GTSTFSQYTVV + +VAKID  +PL+KVCL+GCG  T
Sbjct: 120 RGTL-QDGTRRFTCRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFST 178
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR-----GM 236
           G G+  N AKV PGS  AVFGLG V             +R+I +DI+  KF +       
Sbjct: 179 GYGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGAT 238
Query: 237 SCVSSSKY 244
            C++   Y
Sbjct: 239 ECINPQDY 246

>pdb|1HTB|A Chain A, Crystallization Of Human Beta3 Alcohol Dehydrogenase (10 MgML) IN 100 MM SODIUM PHOSPHATE (PH 7.5), 7.5 MM NAD+ And 1 Mm 4-Iodopyrazole At 25 C Length = 374

Iteration: 1
 Score =  236 bits (601), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 127/248 (51%), Positives = 159/248 (64%), Gaps = 7/248 (2%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IEDV+VAPP+A EVRIK++   +C TD +  SG     
Sbjct: 1   STAGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICRTDDHVVSGNLVTP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P ILGHEAAGIVESVGEGVT V+PGD VIP +  +C +C+ CK+ ++N C K      
Sbjct: 61  L-PVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGNP 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G +  D   RF+  GKPI+HF+GTSTFSQYTVV + +VAKID  +PL+KVCL+GCG  T
Sbjct: 120 RGTL-QDGTRRFTCRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFST 178
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR-----GM 236
           G G+  N AKV PGS  AVFGLG V             +R+I +DI+  KF +       
Sbjct: 179 GYGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGAT 238
Query: 237 SCVSSSKY 244
            C++   Y
Sbjct: 239 ECINPQDY 246

>pdb|1D1T|A Chain A, Mutant Of Human Sigma Alcohol Dehydrogenase With Leucine At Position 141 Length = 373

Iteration: 1
 Score =  235 bits (599), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 122/235 (51%), Positives = 156/235 (66%), Gaps = 3/235 (1%)
Query: 3   TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL 62
           T G+VI CKAAV WE  +P  IE+++VAPP+  EVRIKIL T +C TD +   G      
Sbjct: 2   TAGKVIKCKAAVLWEQKQPFSIEEIEVAPPKTKEVRIKILATGICRTDDHVIKGTMVSK- 60
Query: 63  FPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGA 122
           FP I+GHEA GIVES+GEGVT V+PGD VIP +  +CREC  C++   NLC +    TG 
Sbjct: 61  FPVIVGHEATGIVESIGEGVTTVKPGDKVIPLFLPQCRECNACRNPDGNLCIR-SDITGR 119
Query: 123 GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTG 182
           GV+  D  +RF+  GKP++HF+ TSTF++YTVV + SVAKID  AP +KVCL+GCG  TG
Sbjct: 120 GVLA-DGTTRFTCKGKPVHHFLNTSTFTEYTVVDESSVAKIDDAAPPEKVCLIGCGFSTG 178
Query: 183 LGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRGMS 237
            GA   T KV+PGS   VFGLG V             SR+IGID++  KF++ M+
Sbjct: 179 YGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMA 233

>pdb|1HDZ|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score =  234 bits (598), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 127/248 (51%), Positives = 159/248 (64%), Gaps = 7/248 (2%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IEDV+VAPP+A EVRIK++   +C TD +  SG     
Sbjct: 1   STAGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICGTDDHVVSGNLVTP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P ILGHEAAGIVESVGEGVT V+PGD VIP +  +C +C+ CK+ ++N C K      
Sbjct: 61  L-PVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGNP 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G +  D   RF+  GKPI+HF+GTSTFSQYTVV + +VAKID  +PL+KVCL+GCG  T
Sbjct: 120 RGTL-QDGTRRFTCRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFST 178
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR-----GM 236
           G G+  N AKV PGS  AVFGLG V             +R+I +DI+  KF +       
Sbjct: 179 GYGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGAT 238
Query: 237 SCVSSSKY 244
            C++   Y
Sbjct: 239 ECINPQDY 246

>pdb|1QLH|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed To Nad Double Mutant Of Gly 293 Ala And Pro 295 Thr Length = 374

Iteration: 1
 Score =  234 bits (597), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 127/248 (51%), Positives = 159/248 (64%), Gaps = 7/248 (2%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++ T +C +D +  SG     
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P I GHEAAGIVES+GEGVT V+PGD VIP +  +C +C+ CK  + N C K   +  
Sbjct: 61  L-PVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMP 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G M  D  SRF+  GKPI+HF+GTSTFSQYTVV ++SVAKID  +PL+KVCL+GCG  T
Sbjct: 120 RGTM-QDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFST 178
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR-----GM 236
           G G+    AKV  GS  AVFGLG V             +R+IG+DI+  KF +       
Sbjct: 179 GYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT 238
Query: 237 SCVSSSKY 244
            CV+   Y
Sbjct: 239 ECVNPQDY 246

>pdb|1N8K|A Chain A, Horse Liver Alcohol Dehydrogenase Val292thr Mutant Complexed To Nad+ And Pyrazole Length = 374

Iteration: 1
 Score =  234 bits (596), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 127/248 (51%), Positives = 159/248 (64%), Gaps = 7/248 (2%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++ T +C +D +  SG     
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P I GHEAAGIVES+GEGVT V+PGD VIP +  +C +C+ CK  + N C K   +  
Sbjct: 61  L-PVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMP 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G M  D  SRF+  GKPI+HF+GTSTFSQYTVV ++SVAKID  +PL+KVCL+GCG  T
Sbjct: 120 RGTM-QDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFST 178
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR-----GM 236
           G G+    AKV  GS  AVFGLG V             +R+IG+DI+  KF +       
Sbjct: 179 GYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT 238
Query: 237 SCVSSSKY 244
            CV+   Y
Sbjct: 239 ECVNPQDY 246

>pdb|6ADH|A Chain A, Structure Of Triclinic Ternary Complex Of Horse Liver Alcohol Dehydrogenase At 2.9 Angstroms Resolution Length = 374

Iteration: 1
 Score =  234 bits (596), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 127/248 (51%), Positives = 159/248 (64%), Gaps = 7/248 (2%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++ T +C +D +  SG     
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P I GHEAAGIVES+GEGVT V+PGD VIP +  +C +C+ CK  + N C K   +  
Sbjct: 61  L-PVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMP 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G M  D  SRF+  GKPI+HF+GTSTFSQYTVV ++SVAKID  +PL+KVCL+GCG  T
Sbjct: 120 RGTM-QDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFST 178
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR-----GM 236
           G G+    AKV  GS  AVFGLG V             +R+IG+DI+  KF +       
Sbjct: 179 GYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT 238
Query: 237 SCVSSSKY 244
            CV+   Y
Sbjct: 239 ECVNPQDY 246

>pdb|3OQ6|A Chain A, Horse Liver Alcohol Dehydrogenase A317c Mutant Complexed With Nad+ And 2,3,4,5,6-Pentafluorobenzyl Alcohol Length = 374

Iteration: 1
 Score =  234 bits (596), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 127/248 (51%), Positives = 159/248 (64%), Gaps = 7/248 (2%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++ T +C +D +  SG     
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P I GHEAAGIVES+GEGVT V+PGD VIP +  +C +C+ CK  + N C K   +  
Sbjct: 61  L-PVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMP 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G M  D  SRF+  GKPI+HF+GTSTFSQYTVV ++SVAKID  +PL+KVCL+GCG  T
Sbjct: 120 RGTM-QDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFST 178
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR-----GM 236
           G G+    AKV  GS  AVFGLG V             +R+IG+DI+  KF +       
Sbjct: 179 GYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT 238
Query: 237 SCVSSSKY 244
            CV+   Y
Sbjct: 239 ECVNPQDY 246

>pdb|1JU9|A Chain A, Horse Liver Alcohol Dehydrogenase Val292ser Mutant Length = 374

Iteration: 1
 Score =  234 bits (596), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 127/248 (51%), Positives = 159/248 (64%), Gaps = 7/248 (2%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++ T +C +D +  SG     
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P I GHEAAGIVES+GEGVT V+PGD VIP +  +C +C+ CK  + N C K   +  
Sbjct: 61  L-PVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMP 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G M  D  SRF+  GKPI+HF+GTSTFSQYTVV ++SVAKID  +PL+KVCL+GCG  T
Sbjct: 120 RGTM-QDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFST 178
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR-----GM 236
           G G+    AKV  GS  AVFGLG V             +R+IG+DI+  KF +       
Sbjct: 179 GYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT 238
Query: 237 SCVSSSKY 244
            CV+   Y
Sbjct: 239 ECVNPQDY 246

>pdb|1AXE|A Chain A, Crystal Structure Of The Active-Site Mutant Phe93->trp Of Horse Liver Alcohol Dehydrogenase In Complex With Nad And Inhibitor Trifluoroethanol Length = 374

Iteration: 1
 Score =  233 bits (594), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 127/248 (51%), Positives = 159/248 (64%), Gaps = 7/248 (2%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++ T +C +D +  SG     
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P I GHEAAGIVES+GEGVT V+PGD VIP +  +C +C+ CK  + N C K   +  
Sbjct: 61  L-PVIAGHEAAGIVESIGEGVTTVRPGDKVIPLWTPQCGKCRVCKHPEGNFCLKNDLSMP 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G M  D  SRF+  GKPI+HF+GTSTFSQYTVV ++SVAKID  +PL+KVCL+GCG  T
Sbjct: 120 RGTM-QDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFST 178
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR-----GM 236
           G G+    AKV  GS  AVFGLG V             +R+IG+DI+  KF +       
Sbjct: 179 GYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT 238
Query: 237 SCVSSSKY 244
            CV+   Y
Sbjct: 239 ECVNPQDY 246

>pdb|1AXG|A Chain A, Crystal Structure Of The Val203->ala Mutant Of Liver Alcohol Dehydrogenase Complexed With Cofactor Nad And Inhibitor Trifluoroethanol Solved To 2.5 Angstrom Resolution Length = 374

Iteration: 1
 Score =  232 bits (592), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 126/248 (50%), Positives = 158/248 (63%), Gaps = 7/248 (2%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++ T +C +D +  SG     
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P I GHEAAGIVES+GEGVT V+PGD VIP +  +C +C+ CK  + N C K   +  
Sbjct: 61  L-PVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMP 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G M  D  SRF+  GKPI+HF+GTSTFSQYTVV ++SVAKID  +PL+KVCL+GCG  T
Sbjct: 120 RGTM-QDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFST 178
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR-----GM 236
           G G+    AKV  GS  AVFGLG               +R+IG+DI+  KF +       
Sbjct: 179 GYGSAVKVAKVTQGSTCAVFGLGGAGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT 238
Query: 237 SCVSSSKY 244
            CV+   Y
Sbjct: 239 ECVNPQDY 246

>pdb|1QV6|A Chain A, Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG MUTANT Complexed With Nad+ And 2,4-Difluorobenzyl Alcohol Length = 374

Iteration: 1
 Score =  232 bits (591), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 126/248 (50%), Positives = 158/248 (63%), Gaps = 7/248 (2%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++ T +C +D    SG     
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDQVVSGTLVTP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P I GHEAAGIVES+GEGVT V+PGD VIP +  +C +C+ CK  + N C K   +  
Sbjct: 61  L-PVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMP 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G M  D  SRF+  GKPI+HF+GTSTFSQYTVV ++SVAKID  +PL+KVCL+GCG  T
Sbjct: 120 RGTM-QDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFST 178
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR-----GM 236
           G G+    AKV  GS  AVFGLG V             +R+IG+DI+  +F +       
Sbjct: 179 GYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDRFAKAKEVGAT 238
Query: 237 SCVSSSKY 244
            CV+   Y
Sbjct: 239 ECVNPQDY 246

>pdb|1MGO|A Chain A, Horse Liver Alcohol Dehydrogenase Phe93ala Mutant Length = 374

Iteration: 1
 Score =  232 bits (591), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 127/248 (51%), Positives = 158/248 (63%), Gaps = 7/248 (2%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++ T +C +D +  SG     
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P I GHEAAGIVES+GEGVT V+PGD VIP    +C +C+ CK  + N C K   +  
Sbjct: 61  L-PVIAGHEAAGIVESIGEGVTTVRPGDKVIPLATPQCGKCRVCKHPEGNFCLKNDLSMP 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G M  D  SRF+  GKPI+HF+GTSTFSQYTVV ++SVAKID  +PL+KVCL+GCG  T
Sbjct: 120 RGTM-QDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFST 178
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR-----GM 236
           G G+    AKV  GS  AVFGLG V             +R+IG+DI+  KF +       
Sbjct: 179 GYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT 238
Query: 237 SCVSSSKY 244
            CV+   Y
Sbjct: 239 ECVNPQDY 246

>pdb|1A71|A Chain A, Ternary Complex Of An Active Site Double Mutant Of Horse Liver Alcohol Dehydrogenase, Phe93>trp, Val203>ala With Nad And Trifluoroethanol Length = 374

Iteration: 1
 Score =  231 bits (590), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 126/248 (50%), Positives = 158/248 (63%), Gaps = 7/248 (2%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++ T +C +D +  SG     
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P I GHEAAGIVES+GEGVT V+PGD VIP +  +C +C+ CK  + N C K   +  
Sbjct: 61  L-PVIAGHEAAGIVESIGEGVTTVRPGDKVIPLWTPQCGKCRVCKHPEGNFCLKNDLSMP 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G M  D  SRF+  GKPI+HF+GTSTFSQYTVV ++SVAKID  +PL+KVCL+GCG  T
Sbjct: 120 RGTM-QDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFST 178
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR-----GM 236
           G G+    AKV  GS  AVFGLG               +R+IG+DI+  KF +       
Sbjct: 179 GYGSAVKVAKVTQGSTCAVFGLGGAGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT 238
Query: 237 SCVSSSKY 244
            CV+   Y
Sbjct: 239 ECVNPQDY 246

>pdb|1EE2|B Chain B, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373

Iteration: 1
 Score =  230 bits (586), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 125/248 (50%), Positives = 158/248 (63%), Gaps = 8/248 (3%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++   +C +D +  SG     
Sbjct: 1   STAGKVIKCKAAVLWEQKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSDDHVVSGTLVAP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P I GHEAAGIVES+GEGVT V+PGD VIP +  +C +C  CK  + NLC  ++  + 
Sbjct: 61  L-PVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFIPQCGKCSVCKHPEGNLC--LKNLSM 117
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
               M D  SRF+  GKPI+HF+GTSTFSQYTVV ++SVAKID  +PL+KVCL+GCG  T
Sbjct: 118 PRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLVGCGFST 177
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR-----GM 236
           G G+    AKV  GS  AVFGLG V             +R+IG+DI+  KF +       
Sbjct: 178 GYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT 237
Query: 237 SCVSSSKY 244
            CV+   Y
Sbjct: 238 ECVNPQDY 245

>pdb|1HT0|A Chain A, Human Gamma-2 Alcohol Dehydrogense Length = 374

Iteration: 1
 Score =  229 bits (584), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 123/248 (49%), Positives = 158/248 (63%), Gaps = 7/248 (2%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++   +C +D +  SG     
Sbjct: 1   STAGKVIKCKAAVLWELKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSDEHVVSGNLVTP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P ILGHEAAGIVESVGEGVT V+PGD VIP +  +C +C+ CK+ ++N C K      
Sbjct: 61  L-PVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRICKNPESNYCLKNDLGNP 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G +  D   RF+ +GKPI+HF+G STFSQYTVV + +VAKID  +PL+KVCL+GCG  T
Sbjct: 120 RGTL-QDGTRRFTCSGKPIHHFVGVSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFST 178
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR-----GM 236
           G G+    AKV PGS  AVFGLG V             +R+I +DI+  KF +       
Sbjct: 179 GYGSAVKVAKVTPGSTCAVFGLGGVGLSVVMGCKAAGAARIIAVDINKDKFAKAKELGAT 238
Query: 237 SCVSSSKY 244
            C++   Y
Sbjct: 239 ECINPQDY 246

>pdb|1EE2|A Chain A, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373

Iteration: 1
 Score =  229 bits (583), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 124/247 (50%), Positives = 157/247 (63%), Gaps = 8/247 (3%)
Query: 3   TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL 62
           T G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++   +C +D +  SG     L
Sbjct: 2   TAGKVIKCKAAVLWEQKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSDDHVVSGTLVAPL 61
Query: 63  FPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGA 122
            P I GHEAAGIVES+GEGVT V+PGD VIP +  +C +C  CK  + NLC  ++  +  
Sbjct: 62  -PVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFIPQCGKCSVCKHPEGNLC--LKNLSMP 118
Query: 123 GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTG 182
              M D  SRF+  GKPI+HF+GTSTFSQYTVV ++SVAKID  +PL+KVCL+GCG  TG
Sbjct: 119 RGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLVGCGFSTG 178
Query: 183 LGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR-----GMS 237
            G+    AKV  GS  AVFGLG V             +R+IG+DI+  KF +        
Sbjct: 179 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 238
Query: 238 CVSSSKY 244
           CV+   Y
Sbjct: 239 CVNPQDY 245

>pdb|1HSO|A Chain A, Human Alpha Alcohol Dehydrogenase (Adh1a) Length = 374

Iteration: 1
 Score =  228 bits (582), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 125/248 (50%), Positives = 158/248 (63%), Gaps = 7/248 (2%)
Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++   +C TD +  SG     
Sbjct: 1   STAGKVIKCKAAVLWELKKPFSIEEVEVAPPKAHEVRIKMVAVGICGTDDHVVSGTMVTP 60
Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           L P ILGHEAAGIVESVGEGVT V+PGD VIP    +C +C+ CK+ ++N C K   +  
Sbjct: 61  L-PVILGHEAAGIVESVGEGVTTVKPGDKVIPLAIPQCGKCRICKNPESNYCLKNDVSNP 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G +  D  SRF+   KPI+HF+G STFSQYTVV + +VAKID  +PL+KVCL+GCG  T
Sbjct: 120 QGTL-QDGTSRFTCRRKPIHHFLGISTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFST 178
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR-----GM 236
           G G+  N AKV PGS  AVFGLG V             +R+I +DI+  KF +       
Sbjct: 179 GYGSAVNVAKVTPGSTCAVFGLGGVGLSAIMGCKAAGAARIIAVDINKDKFAKAKELGAT 238
Query: 237 SCVSSSKY 244
            C++   Y
Sbjct: 239 ECINPQDY 246

>pdb|1F8F|A Chain A, Crystal Structure Of Benzyl Alcohol Dehydrogenase From Acinetobacter Calcoaceticus Length = 371

Iteration: 1
 Score =  112 bits (280), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/214 (31%), Positives = 105/214 (49%), Gaps = 9/214 (4%)
Query: 24  IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVT 83
           ++ +++  PQ  EV +K++ T +CHTD      K P  L P +LGHE +GI+E++G  VT
Sbjct: 21  LQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPVPL-PAVLGHEGSGIIEAIGPNVT 79
Query: 84  EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSI----NGKP 139
           E+Q GDHV+  Y   C +C  C +G    C +  G   +G    D +   ++     G  
Sbjct: 80  ELQVGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGA---DSEGNHALCTHDQGVV 135
Query: 140 IYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVA 199
             HF   S+F+ Y +  + +  K+    P++ +  LGCG+ TG GA  N  KV P S   
Sbjct: 136 NDHFFAQSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQTGAGACINALKVTPASSFV 195
Query: 200 VFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFD 233
            +G G V             S +I +DI   + +
Sbjct: 196 TWGAGAVGLSALLAAKVCGASIIIAVDIVESRLE 229

>pdb|3TWO|A Chain A, The Crystal Structure Of Cad From Helicobacter Pylori Complexed With Nadp(H) Length = 348

Iteration: 1
 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 86/170 (50%), Gaps = 15/170 (8%)
Query: 36  EVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHV-IPC 94
           +V I IL+  +CH+D ++   +  EG++P I GHE AGI++ VG+GV + + GD V + C
Sbjct: 31  DVLIDILYAGICHSDIHSAYSEWKEGIYPMIPGHEIAGIIKEVGKGVKKFKIGDVVGVGC 90
Query: 95  YQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTV 154
           +   C+ CK CK  +   C KV       V   D    F  N +P  H  G   +S   V
Sbjct: 91  FVNSCKACKPCKEHQEQFCTKV-------VFTYDCLDSFHDN-EP--HMGG---YSNNIV 137
Query: 155 VHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLG 204
           V +  V  +D  APL+KV  L C   T    +   +KV  G+ V V G G
Sbjct: 138 VDENYVISVDKNAPLEKVAPLLCAGITTYSPL-KFSKVTKGTKVGVAGFG 186

>pdb|1RJW|A Chain A, Crystal Structure Of Nad(+)-Dependent Alcohol Dehydrogenase From Bacillus Stearothermophilus Strain Lld-R Length = 339

Iteration: 1
 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 102/225 (45%), Gaps = 26/225 (11%)
Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCILGH 69
           KAAV  +  +PL I++V+      GEV ++I    +CHTD +   G  P +   P I GH
Sbjct: 2   KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGH 61
Query: 70  EAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128
           E  GIVE VG GVT ++ GD V IP   + C  C +C SG+  LC             + 
Sbjct: 62  EGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLC------------EHQ 109
Query: 129 RKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN 188
           + + +S++G           +++Y       V KI      ++   + C   T   A+  
Sbjct: 110 KNAGYSVDG----------GYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKV 159
Query: 189 TAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFD 233
           T   +PG  VA++G+G +             + V+ +DI  +K +
Sbjct: 160 TG-AKPGEWVAIYGIGGLGHVAVQYAKAMGLN-VVAVDIGDEKLE 202

>pdb|2H6E|A Chain A, Crystal Structure Of The D-Arabinose Dehydrogenase From Sulfolobus Solfataricus Length = 344

Iteration: 1
 Score = 77.4 bits (189), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 63/109 (57%), Gaps = 3/109 (2%)
Query: 7   VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLF--P 64
           ++  KAA+  + ++PL IEDV +  PQ  EV I+I    +C TD   W G + +  F  P
Sbjct: 1   MVKSKAALLKKFSEPLSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLP 60
Query: 65  CILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLC 113
            ILGHE AG +  VGE + +V+ GD+V+         C++C+ GK N+C
Sbjct: 61  IILGHENAGTIVEVGE-LAKVKKGDNVVVYATWGDLTCRYCREGKFNIC 108

>pdb|3PII|A Chain A, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase With Substrate Analogue Butyramide Length = 339

Iteration: 1
 Score = 77.4 bits (189), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 92/196 (46%), Gaps = 25/196 (12%)
Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCILGH 69
           KAAV  +  +PL I++V+      GEV ++I    +CHTD +   G  P +   P I GH
Sbjct: 2   KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGH 61
Query: 70  EAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128
           E  GIVE VG GVT ++ GD V IP   + C  C +C SG+  LC             + 
Sbjct: 62  EGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLC------------EHQ 109
Query: 129 RKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN 188
           + + +S++G           +++Y       V KI      ++   + C   T   A+  
Sbjct: 110 KNAGYSVDG----------GYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKV 159
Query: 189 TAKVEPGSIVAVFGLG 204
           T   +PG  VA++G+G
Sbjct: 160 TG-AKPGEWVAIYGIG 174

>pdb|1LLU|A Chain A, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol Dehydrogenase With Its Coenzyme And Weak Substrate Length = 342

Iteration: 1
 Score = 77.0 bits (188), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 97/227 (42%), Gaps = 26/227 (11%)
Query: 9   TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCIL 67
           T KAAV      PL IE+V+V  P  G+V +KI  + +CHTD +   G  P +   P I 
Sbjct: 6   TMKAAVVHAYGAPLRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPFIP 65
Query: 68  GHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           GHE  G V +VG GVT V+ GD V IP     C  C+ C +G   LC             
Sbjct: 66  GHEGVGYVAAVGSGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLC------------E 113
Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
           + + + +S+NG    + +    +    +  +V  A+I P      +   G  V  GL   
Sbjct: 114 SQQNTGYSVNGGYAEYVLADPNYVG-ILPKNVEFAEIAP------ILCAGVTVYKGL--- 163
Query: 187 WNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFD 233
                  PG  VA+ G+G +               V  IDID  K +
Sbjct: 164 -KQTNARPGQWVAISGIGGLGHVAVQYARAMGL-HVAAIDIDDAKLE 208

>pdb|3MEQ|A Chain A, Crystal Structure Of Alcohol Dehydrogenase From Brucella Mel Length = 365

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 98/230 (42%), Gaps = 32/230 (13%)
Query: 9   TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCIL 67
           T KAAV     KPL I++V +  P  G++++ I  + +CHTD +   G  P +   P I 
Sbjct: 25  TMKAAVVRAFGKPLTIDEVPIPQPGPGQIQVAIQASGVCHTDLHAAEGDWPVKPNPPFIP 84
Query: 68  GHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           GHE  G V +VG GV  V+ GD V IP     C  C+ C  G   LC +           
Sbjct: 85  GHEGVGFVSAVGSGVKHVKEGDRVGIPWLYTACGHCRHCLGGWETLCEE----------- 133
Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
               + +S+NG           F++Y V     V  +      +++  + C   T    V
Sbjct: 134 -QLNTGYSVNGG----------FAEYVVADPNFVGHLPKNIDFNEIAPVLCAGVT----V 178
Query: 187 WNTAKV---EPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFD 233
           +   KV   +PG  V + G+G +             + V  +DID +K D
Sbjct: 179 YKGLKVTDTKPGDWVVISGIGGLGHMAVQYARAMGLN-VAAVDIDDRKLD 227

>pdb|3S1L|A Chain A, Crystal Structure Of Apo-Form Furx Length = 340

Iteration: 1
 Score = 73.9 bits (180), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 97/228 (42%), Gaps = 32/228 (14%)
Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCILGH 69
           KAAV      PL I++V V  P  G+V++KI  + +CHTD +   G  P +   P I GH
Sbjct: 4   KAAVVRAFGAPLTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPFIPGH 63
Query: 70  EAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128
           E  G V +VG GV+ V+ GD V +P   + C  C+ C  G   LC K             
Sbjct: 64  EGVGYVSAVGSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLCEK------------Q 111
Query: 129 RKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN 188
           + + +S+NG           + +Y V     V  +  +    ++  + C   T    V+ 
Sbjct: 112 QNTGYSVNGG----------YGEYVVADPNYVGLLPDKVGFVEIAPILCAGVT----VYK 157
Query: 189 TAKV---EPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFD 233
             KV    PG  V + G+G +              RV  +DID  K +
Sbjct: 158 GLKVTDTRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLN 204

>pdb|4ILK|A Chain A, Crystal Structure Of Short Chain Alcohol Dehydrogenase (rspb) From E. Coli Cft073 (efi Target Efi-506413) Complexed With Cofactor Nadh Length = 359

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           K+ +  +PN+  +IE  ++  P AGEVR+K+    +C +D++ + G +P   +P ++GHE
Sbjct: 22  KSILIEKPNQLSIIER-EIPTPSAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHE 80
Query: 71  AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLC 113
             G++++VGEGV   + G+ V       C  C  C  GK N+C
Sbjct: 81  FFGVIDAVGEGVESARVGERVAVDPVVSCGHCYPCSIGKPNVC 123

>pdb|2HCY|A Chain A, Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevisiae Fermentative Enzyme Length = 347

Iteration: 1
 Score = 70.5 bits (171), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 90/220 (40%), Gaps = 25/220 (11%)
Query: 9   TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL-FPCIL 67
           T K  + +E +  L  +D+ V  P+A E+ I + ++ +CHTD + W G  P  +  P + 
Sbjct: 5   TQKGVIFYESHGKLEYKDIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPLPVKLPLVG 64
Query: 68  GHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           GHE AG+V  +GE V   + GD+  I      C  C++C+ G  + C             
Sbjct: 65  GHEGAGVVVGMGENVKGWKIGDYAGIKWLNGSCMACEYCELGNESNC------------- 111
Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
                   ++G     +    +F QY     V  A I     L +V  + C   T   A+
Sbjct: 112 ----PHADLSG-----YTHDGSFQQYATADAVQAAHIPQGTDLAQVAPILCAGITVYKAL 162
Query: 187 WNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGID 226
             +A +  G  VA+ G                  RV+GID
Sbjct: 163 -KSANLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGID 201

>pdb|1H2B|A Chain A, Crystal Structure Of The Alcohol Dehydrogenase From The Hyperthermophilic Archaeon Aeropyrum Pernix At 1.65a Resolution Length = 359

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 97/229 (42%), Gaps = 26/229 (11%)
Query: 10  CKAAVAWEPNKPLVIEDVQVAPPQAG--EVRIKILFTALCHTDAYTWSGKDPEGL---FP 64
            KAA   E NKPL IEDV   P   G  +V ++I    +CHTD +   G   E L    P
Sbjct: 16  LKAARLHEYNKPLRIEDVDY-PRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLP 74
Query: 65  CILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGV 124
             LGHE  G +E V EGV  ++ GD VI         C  C++G+   C           
Sbjct: 75  YTLGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCE---------- 124
Query: 125 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 184
             N      +I+G     FM TS  S   +  D+S  K+   APL    +      T   
Sbjct: 125 --NLEFPGLNIDGG-FAEFMRTSHRSVIKLPKDISREKLVEMAPLADAGI------TAYR 175
Query: 185 AVWNTAK-VEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKF 232
           AV   A+ + PG+ VA+ G+G +             + VI +D+  +K 
Sbjct: 176 AVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKL 224

>pdb|1UUF|A Chain A, Crystal Structure Of A Zinc-Type Alcohol Dehydrogenase-Like Protein Yahk Length = 369

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 16/173 (9%)
Query: 8   ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
           +  KA  A+   +PL   D+    P   +V+I+I +  +CH+D +    +    ++PC+ 
Sbjct: 21  LKIKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVP 80
Query: 68  GHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           GHE  G V +VG+ V +  PGD V + C    C+ C+ C+ G  N C  + G   +    
Sbjct: 81  GHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNS---- 136
Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI-DPQAPLDKVCLLGCG 178
                      +P +   G   +SQ  VVH+  V +I  PQ  L  V  L C 
Sbjct: 137 -------PTPDEPGHTLGG---YSQQIVVHERYVLRIRHPQEQLAAVAPLLCA 179

>pdb|2EIH|A Chain A, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase Length = 343

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 87/214 (40%), Gaps = 23/214 (10%)
Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSG-KDPEGLFPCILGHEAAGIVESVGE 80
           L + D+ V  P   EVR+++   AL H D +   G   P+   P +LG + +G+V++VG 
Sbjct: 15  LEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHVLGADGSGVVDAVGP 74
Query: 81  GVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPI 140
           GV    PGD V+      C  C+ C +G+ NLC                  R+ I G+  
Sbjct: 75  GVEGFAPGDEVVINPGLSCGRCERCLAGEDNLC-----------------PRYQILGE-- 115
Query: 141 YHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAV 200
            H  G  T+++Y V+ + ++A        ++   +     T    V +   V PG  V V
Sbjct: 116 -HRHG--TYAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLV 172
Query: 201 FGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDR 234
              G+              +RVI       K  R
Sbjct: 173 MAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRR 206

>pdb|1E3J|A Chain A, Ketose Reductase (Sorbitol Dehydrogenase) From Silverleaf Whitefly Length = 352

Iteration: 1
 Score = 63.9 bits (154), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 59/105 (56%), Gaps = 4/105 (3%)
Query: 12  AAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWS-GKDPEGLF--PCILG 68
           +AV ++ N  L +E   +  P+  EV +++ +  +C +D + +  G+  + +   P ++G
Sbjct: 7   SAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIG 65
Query: 69  HEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLC 113
           HEA+G V  VG+ V  ++ GD V       CR C+FCK GK NLC
Sbjct: 66  HEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLC 110

>pdb|2XAA|A Chain A, Alcohol Dehydrogenase Adh-'a' From Rhodococcus Ruber Dsm 44541 At Ph 8.5 In Complex With Nad And Butane-1,4-Diol Length = 345

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 88/227 (38%), Gaps = 41/227 (18%)
Query: 19  NKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLF--PCILGHEAAGIVE 76
           ++P+V+ D+    P  GE+ +K+    LCH+D +       +  +  P  LGHE  G V 
Sbjct: 11  SEPVVV-DIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLGHEGVGTVA 69
Query: 77  SVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSIN 136
            +GEGVT    GD V       C  C  C  G+ N C               R +   I 
Sbjct: 70  ELGEGVTGFGVGDAVAVYGPWGCGACHACARGRENYC--------------TRAADLGIT 115
Query: 137 ----GKPIYHFMGTSTFSQYTVV----HDVSVAKIDP--QAPLDKVCLLGCGVPTGLGAV 186
               G P        + ++Y +V    H V +  +DP   APL    L      T   A+
Sbjct: 116 PPGLGSP-------GSMAEYMIVDSARHLVPIGDLDPVAAAPLTDAGL------TPYHAI 162
Query: 187 WNTAK-VEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKF 232
                 + PGS   V G+G +             +RVI +D+D  + 
Sbjct: 163 SRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRL 209

>pdb|4EEX|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol Dehydrogenase Length = 348

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 27/213 (12%)
Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 81
           LV ++++   P   E  + + +  +CHTD +  +G D       +LGHE  GIV+ +G  
Sbjct: 16  LVEKELRAIKPN--EALLDMEYCGVCHTDLHVAAG-DYGNKAGTVLGHEGIGIVKEIGAD 72
Query: 82  VTEVQPGDHVIPCYQAE-CRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPI 140
           V+ +Q GD V   +  E C  C++C SG    C +V+ A             +S++G   
Sbjct: 73  VSSLQVGDRVSVAWFFEGCGHCEYCVSGNETFCREVKNAG------------YSVDG--- 117
Query: 141 YHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAV 200
                     +  VV D +V   D   P++   +   GV T        + V+PG    +
Sbjct: 118 ------GMAEEAIVVADYAVKVPDGLDPIEASSITCAGVTT--YKAIKVSGVKPGDWQVI 169
Query: 201 FGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFD 233
           FG G +             ++VI +DI+  K +
Sbjct: 170 FGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLN 202

>pdb|4EEZ|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol Dehydrogenase Variant Re1 Length = 348

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 27/213 (12%)
Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 81
           LV ++++   P   E  + + +  +CHTD +  +G D       +LGHE  GIV+ +G  
Sbjct: 16  LVEKELRAIKPN--EALLDMEYCGVCHTDLHVAAG-DFGNKAGTVLGHEGIGIVKEIGAD 72
Query: 82  VTEVQPGDHVIPCYQAE-CRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPI 140
           V+ +Q GD V   +  E C  C++C SG    C +V+ A             +S++G   
Sbjct: 73  VSSLQVGDRVSVAWFFEGCGHCEYCVSGNETFCREVKNAG------------YSVDG--- 117
Query: 141 YHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAV 200
                     +  VV D +V   D   P++   +   GV T        + V+PG    +
Sbjct: 118 ------GMAEEAIVVADYAVKVPDGLDPIEASSITCAGVTT--YKAIKVSGVKPGDWQVI 169
Query: 201 FGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFD 233
           FG G +             ++VI +DI+  K +
Sbjct: 170 FGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLN 202

>pdb|2EER|A Chain A, Structural Study Of Project Id St2577 From Sulfolobus Tokodaii Strain7 Length = 347

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 87/206 (42%), Gaps = 33/206 (16%)
Query: 17  EPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--------DPEGLFPCILG 68
           E  KPL +ED+ +  P+  +V IKI    +CH+D +   G+        D     P  LG
Sbjct: 8   EIGKPLKLEDIPIPKPKGSQVLIKIEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLG 67
Query: 69  HEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVR-------GAT 120
           HE AG +E VG+ V     GD V +  ++ E   C +C+ G+ +LC   R       GA 
Sbjct: 68  HEIAGRIEEVGDEVVGYSKGDLVAVNPWEGEG-NCYYCRIGEEHLCDSPRWLGINYDGAY 126
Query: 121 GAGVMMNDRKSRF------SINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCL 174
              V++   K  +      ++   P+       T S  T    V  A +DP   L    +
Sbjct: 127 AEYVLVPHYKYLYKLRRLSAVEAAPL-------TCSGVTTYRAVRKASLDPSKTL---VV 176
Query: 175 LGCGVPTGLGAVWNTAKVEPGSIVAV 200
           +G G   G  A+     V   +I+ V
Sbjct: 177 IGAGGGLGTMAIQIAKAVSGATIIGV 202

>pdb|1VJ0|A Chain A, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From Thermotoga Maritima At 2.00 A Resolution Length = 380

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 5/107 (4%)
Query: 8   ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
           +   A V  + N+PLV ++ +++    G + ++IL   +C +D + + G+DP    P IL
Sbjct: 16  LKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIIL 75
Query: 68  GHEAAG-IVESVGEGV----TEVQPGDHVIPCYQAECRECKFCKSGK 109
           GHE AG +VE  GE        ++PGD ++      C EC +CK  K
Sbjct: 76  GHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSK 122

>pdb|2DQ4|A Chain A, Crystal Structure Of Threonine 3-Dehydrogenase Length = 343

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 3/106 (2%)
Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD-PEGLF--PCIL 67
           +A     P + L + D  V  P  GE+ +++   ++C TD + W       G    P + 
Sbjct: 2   RALAKLAPEEGLTLVDRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVT 61
Query: 68  GHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLC 113
           GHE +G+VE+VG GV   Q GDHV       C  C  C++G  ++C
Sbjct: 62  GHEFSGVVEAVGPGVRRPQVGDHVSLESHIVCHACPACRTGNYHVC 107

>pdb|3GFB|A Chain A, L-Threonine Dehydrogenase (Tktdh) From The Hyperthermophilic Archaeon Thermococcus Kodakaraensis Length = 350

Iteration: 1
 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 26  DVQVAPPQAGEVRIKILFTALCHTDA--YTWSGKDPEGLFP-CILGHEAAGIVESVGEGV 82
           +V V  P  GEV IK+L T++C TD   Y W+      + P  I+GHE AG V  VG GV
Sbjct: 21  EVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEVGPGV 80
Query: 83  TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR 117
            ++Q GD++       C +C  CK  + ++C   +
Sbjct: 81  EDLQVGDYISVETHIVCGKCYACKHNRYHVCQNTK 115

>pdb|1R37|A Chain A, Alcohol Dehydrogenase From Sulfolobus Solfataricus Complexed With Nad(H) And 2-Ethoxyethanol Length = 347

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 10/116 (8%)
Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--------DPEGL 62
           +A    E  KPL ++++ V  P+  +V IK+    +CH+D +   G+        D    
Sbjct: 2   RAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVK 61
Query: 63  FPCILGHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVR 117
            P  LGHE AG +E VG+ V     GD V +  +Q E   C +C+ G+ +LC   R
Sbjct: 62  LPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEG-NCYYCRIGEEHLCDSPR 116

>pdb|1NTO|A Chain A, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon Sulfolobus Solfataricus-Monoclinic Crystal Form Length = 347

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 10/116 (8%)
Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--------DPEGL 62
           +A    E  KPL ++++ V  P+  +V IK+    +CH+D +   G+        D    
Sbjct: 2   RAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVK 61
Query: 63  FPCILGHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVR 117
            P  LGHE AG +E VG+ V     GD V +  +Q E   C +C+ G+ +LC   R
Sbjct: 62  LPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEG-NCYYCRIGEEHLCDSPR 116

>pdb|1JVB|A Chain A, Alcohol Dehydrogenase From The Archaeon Sulfolobus Solfataricus Length = 347

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 10/116 (8%)
Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--------DPEGL 62
           +A    E  KPL ++++ V  P+  +V IK+    +CH+D +   G+        D    
Sbjct: 2   RAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHXRQGRFGNLRIVEDLGVK 61
Query: 63  FPCILGHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVR 117
            P  LGHE AG +E VG+ V     GD V +  +Q E   C +C+ G+ +LC   R
Sbjct: 62  LPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEG-NCYYCRIGEEHLCDSPR 116

>pdb|3I4C|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh) Double Mutant (W95l,N249y) Length = 347

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 56/116 (48%), Gaps = 10/116 (8%)
Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--------DPEGL 62
           +A    E  KPL ++++ V  P+  +V IK+    +CH+D +   G+        D    
Sbjct: 2   RAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVK 61
Query: 63  FPCILGHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVR 117
            P  LGHE AG +E VG+ V     GD V +   Q E   C +C+ G+ +LC   R
Sbjct: 62  LPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPLQGEG-NCYYCRIGEEHLCDSPR 116

>pdb|4A2C|A Chain A, Crystal Structure Of Galactitol-1-Phosphate Dehydrogenase From Escherichia Coli Length = 346

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 7/106 (6%)
Query: 36  EVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHV---- 91
           EVR+KI  + LC +D      K+    +P  LGHE +G +++VG GV ++ PGD V    
Sbjct: 27  EVRVKIASSGLCGSD-LPRIFKNGAHYYPITLGHEFSGYIDAVGSGVDDLHPGDAVACVP 85
Query: 92  -IPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSI 135
            +PC+   EC +  + +  K +  G  R    A  ++  RK+ F++
Sbjct: 86  LLPCFTCPECLKGFYSQCAKYDFIGSRRDGGFAEYIVVKRKNVFAL 131

>pdb|2DFV|A Chain A, Hyperthermophilic Threonine Dehydrogenase From Pyrococcus Horikoshii Length = 347

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 26  DVQVAPPQAGEVRIKILFTALCHTDA--YTWSGKDPEGLFP-CILGHEAAGIVESVGEGV 82
           +V V  P  GEV IK+L T++C TD   Y W+      + P  I GHE AG V  +G GV
Sbjct: 20  EVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIXGHEVAGEVVEIGPGV 79
Query: 83  TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR 117
             ++ GD+V       C +C  C+ G+ ++C   +
Sbjct: 80  EGIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTK 114

>pdb|2D8A|A Chain A, Crystal Structure Of Ph0655 From Pyrococcus Horikoshii Ot3 Length = 348

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 26  DVQVAPPQAGEVRIKILFTALCHTDA--YTWSGKDPEGLFP-CILGHEAAGIVESVGEGV 82
           +V V  P  GEV IK+L T++C TD   Y W+      + P  I GHE AG V  +G GV
Sbjct: 21  EVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIXGHEVAGEVVEIGPGV 80
Query: 83  TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR 117
             ++ GD+V       C +C  C+ G+ ++C   +
Sbjct: 81  EGIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTK 115

>pdb|1PL7|A Chain A, Human Sorbitol Dehydrogenase (Apo) Length = 356

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLF---PCILGHEAAGIVESV 78
           L +E+  +  P   EV +++    +C +D + W            P +LGHEA+G VE V
Sbjct: 19  LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKV 78
Query: 79  GEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNL 112
           G  V  ++PGD V     A     +FCK G+ NL
Sbjct: 79  GSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNL 112

>pdb|4EJ6|A Chain A, Crystal Structure Of A Putative Zinc-Binding Dehydrogenase (Target Psi-012003) From Sinorhizobium Meliloti 1021 Length = 370

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Query: 13  AVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAA 72
           AV  E    + + +V +  P   ++ +K+    +C TD +   G+ P    P  LGHE  
Sbjct: 26  AVRLESVGNISVRNVGIPEPGPDDLLVKVEACGICGTDRHLLHGEFPS-TPPVTLGHEFC 84
Query: 73  GIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR 117
           GIV   G  V ++ PG  +       C  C  C++G+ NLC  +R
Sbjct: 85  GIVVEAGSAVRDIAPGARITGDPNISCGRCPQCQAGRVNLCRNLR 129

>pdb|1YQD|A Chain A, Sinapyl Alcohol Dehydrogenase Complexed With Nadp+ Length = 366

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 62/146 (42%), Gaps = 22/146 (15%)
Query: 36  EVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHV-IPC 94
           +VR K+L+  +CH+D ++        ++P + GHE  G V  VG  V +V  GD V + C
Sbjct: 43  DVRFKVLYCGVCHSDLHSIKNDWGFSMYPLVPGHEIVGEVTEVGSKVKKVNVGDKVGVGC 102
Query: 95  YQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTST---FSQ 151
               C  C+ C +   N C K+                  +    IYH  GT T   +S 
Sbjct: 103 LVGACHSCESCANDLENYCPKM-----------------ILTYASIYH-DGTITYGGYSN 144
Query: 152 YTVVHDVSVAKIDPQAPLDKVCLLGC 177
           + V ++  + +     PLD    L C
Sbjct: 145 HMVANERYIIRFPDNMPLDGGAPLLC 170

>pdb|1PL6|A Chain A, Human SdhNADHINHIBITOR COMPLEX Length = 356

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLF---PCILGHEAAGIVESV 78
           L +E+  +  P   EV ++     +C +D + W            P +LGHEA+G VE V
Sbjct: 19  LRLENYPIPEPGPNEVLLRXHSVGICGSDVHYWEYGRIGNFIVKKPXVLGHEASGTVEKV 78
Query: 79  GEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNL 112
           G  V  ++PGD V     A     +FCK G+ NL
Sbjct: 79  GSSVKHLKPGDRVAIEPGAPRENDEFCKXGRYNL 112

>pdb|3QE3|A Chain A, Sheep Liver Sorbitol Dehydrogenase Length = 355

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWS-GKDPEGLF--PCILGHEAAGIVESV 78
           L +E+  +  P   EV +K+    +C +D + W  G+  + +   P +LGHEA+G V  V
Sbjct: 18  LRLENYPIPEPGPNEVLLKMHSVGICGSDVHYWQHGRIGDFVVKKPMVLGHEASGTVVKV 77
Query: 79  GEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNL 112
           G  V  +QPGD V     A  +  +FCK G+ NL
Sbjct: 78  GSLVRHLQPGDRVAIQPGAPRQTDEFCKIGRYNL 111

>pdb|2CD9|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 - Apo Form Length = 366

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 9/109 (8%)
Query: 11  KAAVAWEPNKPLVIEDVQVAPPQA-GEVRIKILFTALCHTDAYTWSGKD-----PEGLFP 64
           KA +   PN  + ++DV      + G+++I+ ++  +C TD    +GK      P+G   
Sbjct: 2   KAIIVKPPNAGVQVKDVDEKKLDSYGKIKIRTIYNGICGTDREIVNGKLTLSTLPKGKDF 61
Query: 65  CILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLC 113
            +LGHEA G+VE    G ++   GD V+P  +  C  C+ C  G+ + C
Sbjct: 62  LVLGHEAIGVVEESYHGFSQ---GDLVMPVNRRGCGICRNCLVGRPDFC 107

>pdb|2CDB|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex With Nadp And Glucose Length = 366

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 9/109 (8%)
Query: 11  KAAVAWEPNKPLVIEDVQVAPPQA-GEVRIKILFTALCHTDAYTWSGKD-----PEGLFP 64
           KA +   PN  + ++DV      + G+++I+ ++  +C  D    +GK      P+G   
Sbjct: 2   KAIIVKPPNAGVQVKDVDEKKLDSYGKIKIRTIYNGICGADREIVNGKLTLSTLPKGKDF 61
Query: 65  CILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLC 113
            +LGHEA G+VE    G ++   GD V+P  +  C  C+ C  G+ + C
Sbjct: 62  LVLGHEAIGVVEESYHGFSQ---GDLVMPVNRRGCGICRNCLVGRPDFC 107

>pdb|1KOL|A Chain A, Crystal Structure Of Formaldehyde Dehydrogenase Length = 398

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 86/205 (41%), Gaps = 26/205 (12%)
Query: 37  VRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQ 96
           V +K++ T +C +D +   G+    +   +LGHE  G V   G  V  +Q GD V   + 
Sbjct: 36  VILKVVSTNICGSDQHMVRGRTTAQV-GLVLGHEITGEVIEKGRDVENLQIGDLVSVPFN 94
Query: 97  AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQ--YTV 154
             C  C+ CK   T +C  V  A   G                 Y  MG  T  Q  Y +
Sbjct: 95  VACGRCRSCKEMHTGVCLTVNPARAGGAYG--------------YVDMGDWTGGQAEYVL 140
Query: 155 V--HDVSVAKI-DPQAPLDKVCLLGCG---VPTGL-GAVWNTAKVEPGSIVAVFGLGTVX 207
           V   D ++ K+ D    ++K+  L C    +PTG  GAV  TA V PGS V V G G V 
Sbjct: 141 VPYADFNLLKLPDRDKAMEKIRDLTCLSDILPTGYHGAV--TAGVGPGSTVYVAGAGPVG 198
Query: 208 XXXXXXXXXXXXSRVIGIDIDPKKF 232
                       + VI  D++P + 
Sbjct: 199 LAAAASARLLGAAVVIVGDLNPARL 223

>pdb|3FPL|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-295 Of C. Beijerinckii Adh By T. Brockii Adh Length = 351

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 74/183 (40%), Gaps = 31/183 (16%)
Query: 66  ILGHEAAGIVESVGEGVTEVQPGDHVI-PCYQAECRECKFCKSGKTNLCGKVRGATGAGV 124
           ILGHEA G V  VG  V + +PGD VI PC   + R  +     + +  G + G      
Sbjct: 56  ILGHEAVGEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGW----- 110
Query: 125 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH--DVSVAKIDPQAPLDKVCLLGCGVPTG 182
               + S F               F +Y  V+  D+++A +    PL+   ++   + TG
Sbjct: 111 ----KFSNFK-----------DGVFGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTG 155
Query: 183 LGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRGMSCVSSS 242
                  A +E G+ VAV G+G V              R+I +   P        CV ++
Sbjct: 156 FHGA-ELADIELGATVAVLGIGPVGLMAVAGAKLRGAGRIIAVGSRP-------VCVDAA 207
Query: 243 KYH 245
           KY+
Sbjct: 208 KYY 210

>pdb|1JQB|A Chain A, Alcohol Dehydrogenase From Clostridium Beijerinckii: Crystal Structure Of Mutant With Enhanced Thermal Stability Length = 351

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 74/183 (40%), Gaps = 31/183 (16%)
Query: 66  ILGHEAAGIVESVGEGVTEVQPGDHVI-PCYQAECRECKFCKSGKTNLCGKVRGATGAGV 124
           ILGHEA G V  VG  V + +PGD VI PC   + R  +     + +  G + G      
Sbjct: 56  ILGHEAVGEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGW----- 110
Query: 125 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH--DVSVAKIDPQAPLDKVCLLGCGVPTG 182
               + S F               F +Y  V+  D+++A +    PL+   ++   + TG
Sbjct: 111 ----KFSNFK-----------DGVFGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTG 155
Query: 183 LGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRGMSCVSSS 242
                  A +E GS V V G+G V              R+IG+   P        CV ++
Sbjct: 156 FHGA-ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP-------ICVEAA 207
Query: 243 KYH 245
           K++
Sbjct: 208 KFY 210

>pdb|1PED|A Chain A, Bacterial Secondary Alcohol Dehydrogenase (Apo-Form) Length = 351

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 74/183 (40%), Gaps = 31/183 (16%)
Query: 66  ILGHEAAGIVESVGEGVTEVQPGDHVI-PCYQAECRECKFCKSGKTNLCGKVRGATGAGV 124
           ILGHEA G V  VG  V + +PGD VI PC   + R  +     + +  G + G      
Sbjct: 56  ILGHEAVGEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGW----- 110
Query: 125 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH--DVSVAKIDPQAPLDKVCLLGCGVPTG 182
               + S F               F +Y  V+  D+++A +    PL+   ++   + TG
Sbjct: 111 ----KFSNFK-----------DGVFGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTG 155
Query: 183 LGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRGMSCVSSS 242
                  A ++ GS V V G+G V              R+IG+   P        CV ++
Sbjct: 156 FHGA-ELADIQMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP-------ICVEAA 207
Query: 243 KYH 245
           K++
Sbjct: 208 KFY 210

>pdb|1QOR|A Chain A, Crystal Structure Of Escherichia Coli Quinone Oxidoreductase Complexed With Nadph Length = 327

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 21 PLVIEDVQVAP--PQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESV 78
          P V++ V+  P  P   E++++     +   D Y  SG  P    P  LG EAAGIV  V
Sbjct: 13 PEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKV 72
Query: 79 GEGVTEVQPGDHVIPCYQA 97
          G GV  ++ GD V+    A
Sbjct: 73 GSGVKHIKAGDRVVYAQSA 91

>pdb|2NVB|A Chain A, Contribution Of Pro275 To The Thermostability Of The Alcohol Dehydrogenases (Adhs) Length = 352

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 83/209 (39%), Gaps = 29/209 (13%)
Query: 39  IKILFTALCHTDAYT-WSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDH-VIPCYQ 96
           ++ L  A C +D +T + G   E     ILGHEA G V  VG  V + +PGD  V+P   
Sbjct: 29  VRPLAVAPCTSDIHTVFEGAIGE-RHNMILGHEAVGEVVEVGSEVKDFKPGDRVVVPAIT 87
Query: 97  AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH 156
            + R  +  +    +  G + G   + V        F +N                    
Sbjct: 88  PDWRTSEVQRGYHQHSGGMLAGWKFSNVKDGVFGEFFHVNDA------------------ 129
Query: 157 DVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXX 216
           D+++A +  + PL+   ++   + TG       A +E G+ VAV G+G V          
Sbjct: 130 DMNLAHLPKEIPLEAAVMIPDMMTTGFHGA-ELADIELGATVAVLGIGPVGLMAVAGAKL 188
Query: 217 XXXSRVIGIDIDPKKFDRGMSCVSSSKYH 245
               R+I +   P        CV ++KY+
Sbjct: 189 RGAGRIIAVGSRP-------VCVDAAKYY 210

>pdb|1YKF|A Chain A, Nadp-Dependent Alcohol Dehydrogenase From Thermoanaerobium Brockii Length = 352

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 83/209 (39%), Gaps = 29/209 (13%)
Query: 39  IKILFTALCHTDAYT-WSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDH-VIPCYQ 96
           ++ L  A C +D +T + G   E     ILGHEA G V  VG  V + +PGD  V+P   
Sbjct: 29  VRPLAVAPCTSDIHTVFEGAIGE-RHNMILGHEAVGEVVEVGSEVKDFKPGDRVVVPAIT 87
Query: 97  AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH 156
            + R  +  +    +  G + G   + V        F +N                    
Sbjct: 88  PDWRTSEVQRGYHQHSGGMLAGWKFSNVKDGVFGEFFHVNDA------------------ 129
Query: 157 DVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXX 216
           D+++A +  + PL+   ++   + TG       A +E G+ VAV G+G V          
Sbjct: 130 DMNLAHLPKEIPLEAAVMIPDMMTTGFHGA-ELADIELGATVAVLGIGPVGLMAVAGAKL 188
Query: 217 XXXSRVIGIDIDPKKFDRGMSCVSSSKYH 245
               R+I +   P        CV ++KY+
Sbjct: 189 RGAGRIIAVGSRP-------VCVDAAKYY 210

>pdb|2B83|A Chain A, A Single Amino Acid Substitution In The Clostridium Beijerinckii Alcohol Dehydrogenase Is Critical For Thermostabilization Length = 351

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 73/183 (39%), Gaps = 31/183 (16%)
Query: 66  ILGHEAAGIVESVGEGVTEVQPGDHVI-PCYQAECRECKFCKSGKTNLCGKVRGATGAGV 124
           ILGHEA G V  VG  V + +PGD VI PC   + R  +       +  G + G      
Sbjct: 56  ILGHEAVGEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFPQHSNGMLAGW----- 110
Query: 125 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH--DVSVAKIDPQAPLDKVCLLGCGVPTG 182
               + S F               F +Y  V+  D+++A +    PL+   ++   + TG
Sbjct: 111 ----KFSNFK-----------DGVFGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTG 155
Query: 183 LGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRGMSCVSSS 242
                  A ++ GS V V G+G V              R+IG+   P        CV ++
Sbjct: 156 FHGA-ELADIQMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP-------ICVEAA 207
Query: 243 KYH 245
           K++
Sbjct: 208 KFY 210

>pdb|3JYL|A Chain A, Crystal Structures Of Pseudomonas Syringae Pv. Tomato Dc3000 Quinone Oxidoreductase Length = 325

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 21 PLVIEDVQVAP----PQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVE 76
          P V+E V   P    PQA  VR K +   L   D Y  SG  P    P  LG E AG+VE
Sbjct: 13 PEVLEYVDFEPEAPGPQAVVVRNKAI--GLNFIDTYYRSGLYPAPFLPSGLGAEGAGVVE 70
Query: 77 SVGEGVTEVQPGDHV 91
          +VG+ VT  + GD V
Sbjct: 71 AVGDEVTRFKVGDRV 85

>pdb|3FTN|A Chain A, Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDROGENASE BY EXCHANGE Of The Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By C. Beijerinckii Adh Length = 352

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 83/209 (39%), Gaps = 29/209 (13%)
Query: 39  IKILFTALCHTDAYT-WSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDH-VIPCYQ 96
           ++ L  A C +D +T + G   E     ILGHEA G V  VG  V + +PGD  V+P   
Sbjct: 29  VRPLAVAPCTSDIHTVFEGAIGE-RHNMILGHEAVGEVVEVGSEVKDFKPGDRVVVPAIT 87
Query: 97  AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH 156
            + R  +  +    +  G + G   + V        F +N                    
Sbjct: 88  PDWRTSEVQRGYHQHSGGMLAGWKFSNVKDGVFGEFFHVNDA------------------ 129
Query: 157 DVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXX 216
           D+++A +  + PL+   ++   + TG       A +E GS V V G+G V          
Sbjct: 130 DMNLAHLPKEIPLEAAVMIPDMMTTGFHGA-ELADIEMGSSVVVIGIGAVGLMGIAGAKL 188
Query: 217 XXXSRVIGIDIDPKKFDRGMSCVSSSKYH 245
               R+IG+   P        CV ++K++
Sbjct: 189 RGAGRIIGVGSRP-------ICVEAAKFY 210

>pdb|3M6I|A Chain A, L-Arabinitol 4-Dehydrogenase Length = 363

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 64/133 (48%), Gaps = 7/133 (5%)
Query: 33  QAGEVRIKILFTALCHTDAYTWS-GKDPEGLFPC--ILGHEAAGIVESVGEGVTEVQPGD 89
           + GEV + +  T +C +D + W  G     +  C  +LGHE+AG V +V   V  ++ GD
Sbjct: 39  KEGEVTVAVRSTGICGSDVHFWKHGCIGPMIVECDHVLGHESAGEVIAVHPSVKSIKVGD 98
Query: 90  HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIY-HFMGTST 148
            V    Q  C  C+ C +G+ N C +V   +   V    R+    +N   ++ H +G  +
Sbjct: 99  RVAIEPQVICNACEPCLTGRYNGCERVDFLSTPPVPGLLRR---YVNHPAVWCHKIGNMS 155
Query: 149 FSQYTVVHDVSVA 161
           +    ++  +SVA
Sbjct: 156 YENGAMLEPLSVA 168

>pdb|3FSR|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By C. Beijerinckii Adh Length = 352

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 83/209 (39%), Gaps = 29/209 (13%)
Query: 39  IKILFTALCHTDAYT-WSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDH-VIPCYQ 96
           ++ L  A C +D +T + G   E     ILGHEA G V  VG  V + +PGD  V+P   
Sbjct: 29  VRPLAVAPCTSDIHTVFEGAIGE-RHNMILGHEAVGEVVEVGSEVKDFKPGDRVVVPAIT 87
Query: 97  AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH 156
            + R  +  +    +  G + G   + V        F +N                    
Sbjct: 88  PDWRTSEVQRGYHQHSGGMLAGWKFSNVKDGVFGEFFHVNDA------------------ 129
Query: 157 DVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXX 216
           D+++A +  + PL+   ++   + TG       A ++ GS V V G+G V          
Sbjct: 130 DMNLAHLPKEIPLEAAVMIPDMMTTGFHGA-ELADIQMGSSVVVIGIGAVGLMGIAGAKL 188
Query: 217 XXXSRVIGIDIDPKKFDRGMSCVSSSKYH 245
               R+IG+   P        CV ++K++
Sbjct: 189 RGAGRIIGVGSRP-------ICVEAAKFY 210

>pdb|2B5W|A Chain A, Crystal Structure Of D38c Glucose Dehydrogenase Mutant From Haloferax Mediterranei Length = 357

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 19 NKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD---PEGLFPCILGHEAAGIV 75
          ++P+VIE  +   P++GE  ++ L   +C TD    +G     PEG    +LGHEA G+V
Sbjct: 11 DRPVVIEKPR-PEPESGEALVRTLRVGVCGTDHEVIAGGHGGFPEGEDHLVLGHEAVGVV 69
Query: 76 ESVGEGVTEVQPGDHVIPC 94
            V    TE++ GD V+P 
Sbjct: 70 --VDPNDTELEEGDIVVPT 86

>pdb|1WLY|A Chain A, Crystal Structure Of 2-haloacrylate Reductase Length = 333

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLF----PCILGHEAAGIVES 77
           V E+V+V  P  G+VR++     +   D Y  +G  P  L     P ++G EAA +VE 
Sbjct: 16 FVWEEVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGI-PHPLVVGEPPIVVGFEAAAVVEE 74
Query: 78 VGEGVTEVQPGDHVIPC 94
          VG GVT+   G+ V  C
Sbjct: 75 VGPGVTDFTVGERVCTC 91

>pdb|2DPH|A Chain A, Crystal Structure Of Formaldehyde Dismutase Length = 398

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 37  VRIKILFTALCHTDAYTWSGKD--PEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPC 94
           V +K++ T +C +D + + G+   P+G    +LGHE  G V   G  V  +  GD V   
Sbjct: 35  VILKVVSTNICGSDQHIYRGRFIVPKG---HVLGHEITGEVVEKGSDVELMDIGDLVSVP 91
Query: 95  YQAECRECKFCKSGKTNLC 113
           +   C  C+ CK  ++++C
Sbjct: 92  FNVACGRCRNCKEARSDVC 110

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	246
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	1e-160
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	1e-159
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	1e-158
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	1e-157
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	1e-157
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	1e-137
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	1e-117
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	4e-61
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	2e-52
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	5e-46
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	5e-46
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	9e-46
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	1e-45
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	2e-44
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	3e-44
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	3e-43
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	5e-43
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	7e-43
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	5e-40
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	4e-39
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	2e-38
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	3e-38
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	1e-37
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	1e-37
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	7e-36
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	2e-29
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	6e-29
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	1e-28
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	7e-27
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	9e-27
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	7e-26
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	4e-24
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	6e-24
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	4e-22
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	9e-22
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	4e-21
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	1e-20
3gms_A	340	Putative NADPH:quinone reductase; structural genom	4e-18
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	2e-16
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	3e-16
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	3e-15
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	7e-15
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	7e-15
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	8e-15
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	2e-14
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	8e-14
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	9e-14
4eye_A	342	Probable oxidoreductase; structural genomics, niai	3e-13
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	5e-13
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	6e-13
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	1e-12
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	2e-11
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	5e-11
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	6e-11
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	2e-10
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	9e-10
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	2e-09
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	1e-08
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	2e-08
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	2e-06
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	7e-04
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	8e-04

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* Length = 373

 Score =  448 bits (1154), Expect = e-160
 Identities = 157/232 (67%), Positives = 181/232 (78%), Gaps = 1/232 (0%)

Query: 5   GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFP 64
            +VI CKAAVAWE  KPL IE+++VAPP+A EVRIKI+ TA+CHTDAYT SG DPEG FP
Sbjct: 2   NEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFP 61

Query: 65  CILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGV 124
            ILGH  AGIVESVGEGVT+++ GD VIP Y  +C ECKFC + KTNLC K+R   G G+
Sbjct: 62  VILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGL 121

Query: 125 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 184
           M  D  SRF+  GK I H+MGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG G
Sbjct: 122 MP-DGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYG 180

Query: 185 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM 236
           A  NTAK+EPGS+ AVFGLG VGLAV  G K AGASR+IG+DI+  KF R  
Sbjct: 181 AAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAK 232

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* Length = 373

 Score =  444 bits (1145), Expect = e-159
 Identities = 132/236 (55%), Positives = 163/236 (69%), Gaps = 3/236 (1%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
           M T G+ ITCKAAVAWEP+KPL +E + VAPP+A EVRIKIL + +C +D+       P 
Sbjct: 1   MCTAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPS 60

Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
             FP ILGHEA G+VES+G GVT V+PGD VIP +  +C  C+ CKS  +N C K     
Sbjct: 61  K-FPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGA 119

Query: 121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
             G+M  D  SRF+  GKPIY+ MGTSTF++YTVV D++VAKIDP+APL+  CL+GCG  
Sbjct: 120 KTGLMA-DMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKAPLES-CLIGCGFA 177

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM 236
           TG GA  NTAKV PGS  AVFGLG VG +   G KAAGASR+IG+     KF + +
Sbjct: 178 TGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI 233

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* Length = 376

 Score =  442 bits (1138), Expect = e-158
 Identities = 128/237 (54%), Positives = 166/237 (70%), Gaps = 4/237 (1%)

Query: 3   TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL 62
           T+G+VI CKAA+AW+   PL IE+++V+PP+A EVRI+++ T +C TD      K    L
Sbjct: 2   TQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKK-AL 60

Query: 63  FPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR---GA 119
           FP +LGHE AGIVESVG GVT  +PGD VIP +  +C+ CK C S  TNLCGK+R     
Sbjct: 61  FPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYP 120

Query: 120 TGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGV 179
           T    +M DR SRF+  G+ IYHFMG S+FSQYTVV + ++A++D +A L++VCL+GCG 
Sbjct: 121 TIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCGF 180

Query: 180 PTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM 236
            +G GA  NTAKV PGS  AVFGLG VGL+   G K AGASR+I IDI+ +KF +  
Sbjct: 181 SSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK 237

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... Length = 374

 Score =  440 bits (1135), Expect = e-157
 Identities = 132/235 (56%), Positives = 164/235 (69%), Gaps = 2/235 (0%)

Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++ T +C +D +  SG     
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP 60

Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
             P I GHEAAGIVES+GEGVT V+PGD VIP +  +C +C+ CK  + N C K   +  
Sbjct: 61  -LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMP 119

Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G M  D  SRF+  GKPI+HF+GTSTFSQYTVV ++SVAKID  +PL+KVCL+GCG  T
Sbjct: 120 RGTMQ-DGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFST 178

Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM 236
           G G+    AKV  GS  AVFGLG VGL+V  G KAAGA+R+IG+DI+  KF +  
Sbjct: 179 GYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAK 233

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 Length = 374

 Score =  440 bits (1134), Expect = e-157
 Identities = 135/235 (57%), Positives = 170/235 (72%), Gaps = 1/235 (0%)

Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           +T G+VI CKAAVAWE NKPLVIE+++V  P A E+RIKI+ T +CHTD Y       + 
Sbjct: 1   ATVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKD 60

Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
            FP +LGHE AGIVESVG GVTE QPG+ VIP + ++C EC+FC+S KTN C K      
Sbjct: 61  GFPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANES 120

Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
              +M+ +++RF+  G+ +  F+GTSTFSQYTVV+ ++VAKIDP APLD VCLLGCGV T
Sbjct: 121 PD-VMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVST 179

Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM 236
           G GA  NTAKVEPGS  AVFGLG VGLA   G  +AGA R+I +D++P KF++  
Sbjct: 180 GFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK 234

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 Length = 371

 Score =  388 bits (1000), Expect = e-137
 Identities = 73/230 (31%), Positives = 115/230 (50%), Gaps = 5/230 (2%)

Query: 6   QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC 65
           ++    AAV         ++ +++  PQ  EV +K++ T +CHTD      K P    P 
Sbjct: 3   ELKDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPVP-LPA 61

Query: 66  ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
           +LGHE +GI+E++G  VTE+Q GDHV+  Y   C +C  C +G    C +  G   +G  
Sbjct: 62  VLGHEGSGIIEAIGPNVTELQVGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGAD 120

Query: 126 MNDRKSRFSINGKPIY--HFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGL 183
             +       + + +   HF   S+F+ Y +  + +  K+    P++ +  LGCG+ TG 
Sbjct: 121 S-EGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQTGA 179

Query: 184 GAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
           GA  N  KV P S    +G G VGL+    AK  GAS +I +DI   + +
Sbjct: 180 GACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLE 229

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380

 Score =  338 bits (870), Expect = e-117
 Identities = 60/232 (25%), Positives = 97/232 (41%), Gaps = 19/232 (8%)

Query: 8   ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
           +   A V  + N+PLV ++ +++    G + ++IL   +C +D + + G+DP    P IL
Sbjct: 16  LKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIIL 75

Query: 68  GHEAAGIVESVGEGVT-----EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGA 122
           GHE AG V  V           ++PGD ++      C EC +CK  K       R     
Sbjct: 76  GHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNR----K 131

Query: 123 GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH-DVSVAKIDPQAPLDKVCLLGCGVPT 181
              +N   S +        H  G   +S + V+  +  V K+  +  LD + +  C   T
Sbjct: 132 VYGINRGCSEYP-------HLRG--CYSSHIVLDPETDVLKVSEKDDLDVLAMAMCSGAT 182

Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
              A     +   G  V + G G +GL     A++ GA  VI I   P +  
Sbjct: 183 AYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLK 234

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* Length = 345

 Score =  194 bits (496), Expect = 4e-61
 Identities = 53/226 (23%), Positives = 78/226 (34%), Gaps = 20/226 (8%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE--GLFPCILG 68
           KA    E     V+ D+    P  GE+ +K+    LCH+D +       +     P  LG
Sbjct: 2   KAVQYTEIGSEPVVVDIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLG 61

Query: 69  HEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128
           HE  G V  +GEGVT    GD V       C  C  C  G+ N C +             
Sbjct: 62  HEGVGTVAELGEGVTGFGVGDAVAVYGPWGCGACHACARGRENYCTRAADLGITP----- 116

Query: 129 RKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKV-CLLGCGVPTGLGAVW 187
                   G          + ++Y +V                   L   G+        
Sbjct: 117 --PGLGSPG----------SMAEYMIVDSARHLVPIGDLDPVAAAPLTDAGLTPYHAISR 164

Query: 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
               + PGS   V G+G +G    +  +A  A+RVI +D+D  +  
Sbjct: 165 VLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLA 210

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 Length = 359

 Score =  172 bits (438), Expect = 2e-52
 Identities = 65/241 (26%), Positives = 95/241 (39%), Gaps = 30/241 (12%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQV-APPQAGEVRIKILFTALCHTDAYTWSGKDP 59
            S    V   KAA   E NKPL IEDV         +V ++I    +CHTD +   G   
Sbjct: 7   FSQSLGVERLKAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWH 66

Query: 60  EGL---FPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKV 116
           E L    P  LGHE  G +E V EGV  ++ GD VI         C  C++G+   C  +
Sbjct: 67  ELLQPKLPYTLGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENL 126

Query: 117 RGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDK---VC 173
                            +I+G           F+++      SV K+      +K   + 
Sbjct: 127 EF------------PGLNIDG----------GFAEFMRTSHRSVIKLPKDISREKLVEMA 164

Query: 174 LLGCGVPTGLGAVWNT-AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF 232
            L     T   AV      + PG+ VA+ G+G +G    +  K    + VI +D+  +K 
Sbjct: 165 PLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKL 224

Query: 233 D 233
            
Sbjct: 225 K 225

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347

 Score =  155 bits (395), Expect = 5e-46
 Identities = 56/232 (24%), Positives = 93/232 (40%), Gaps = 32/232 (13%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSG--------KDPEGL 62
           +A    E  KPL ++++ V  P+  +V IK+    +CH+D +   G        +D    
Sbjct: 2   RAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVK 61

Query: 63  FPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGA 122
            P  LGHE AG +E VG+ V     GD V          C +C+ G+ +LC   R   G 
Sbjct: 62  LPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPR-WLG- 119

Query: 123 GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTG 182
                      + +G           +++Y +V          +    +   L C   T 
Sbjct: 120 ----------INFDG----------AYAEYVIVPHYKYMYKLRRLNAVEAAPLTCSGITT 159

Query: 183 LGAVWNTAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
             AV   A ++P   + V G  G +G    + AKA   + +IG+D+  +  +
Sbjct: 160 YRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVE 210

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} Length = 344

 Score =  155 bits (394), Expect = 5e-46
 Identities = 62/231 (26%), Positives = 95/231 (41%), Gaps = 29/231 (12%)

Query: 9   TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE--GLFPCI 66
             KAA+  + ++PL IEDV +  PQ  EV I+I    +C TD   W G + +     P I
Sbjct: 3   KSKAALLKKFSEPLSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPII 62

Query: 67  LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           LGHE AG +  VGE + +V+ GD+V+         C++C+ GK N+C       G     
Sbjct: 63  LGHENAGTIVEVGE-LAKVKKGDNVVVYATWGDLTCRYCREGKFNICKNQI-IPG----- 115

Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
                  + NG           FS+Y +V               +   L     T +GA+
Sbjct: 116 ------QTTNG----------GFSEYMLVKSSRWLVKLNSLSPVEAAPLADAGTTSMGAI 159

Query: 187 ---WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGAS-RVIGIDIDPKKFD 233
                        +V V G+G + +   +  KA   +  ++GI    K  D
Sbjct: 160 RQALPFISKFAEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRD 210

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* Length = 340

 Score =  155 bits (393), Expect = 9e-46
 Identities = 70/230 (30%), Positives = 102/230 (44%), Gaps = 36/230 (15%)

Query: 9   TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPCIL 67
             KAAV      PL I++V V  P  G+V++KI  + +CHTD +   G  P     P I 
Sbjct: 2   MMKAAVVRAFGAPLTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPFIP 61

Query: 68  GHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           GHE  G V +VG GV+ V+ GD V +P   + C  C+ C  G   LC K +         
Sbjct: 62  GHEGVGYVSAVGSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLCEKQQNTG------ 115

Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGC-GVPTGLGA 185
                 +S+NG           + +Y V     V  +  +    ++  + C GV      
Sbjct: 116 ------YSVNG----------GYGEYVVADPNYVGLLPDKVGFVEIAPILCAGV-----T 154

Query: 186 VWN---TAKVEPGSIVAVFGLGTVG-LAVAEGAKAAGASRVIGIDIDPKK 231
           V+         PG  V + G+G +G +AV + A+A G  RV  +DID  K
Sbjct: 155 VYKGLKVTDTRPGQWVVISGIGGLGHVAV-QYARAMGL-RVAAVDIDDAK 202

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A Length = 339

 Score =  154 bits (392), Expect = 1e-45
 Identities = 71/228 (31%), Positives = 106/228 (46%), Gaps = 36/228 (15%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPCILGH 69
           KAAV  +  +PL I++V+      GEV ++I    +CHTD +   G  P     P I GH
Sbjct: 2   KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGH 61

Query: 70  EAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128
           E  GIVE VG GVT ++ GD V IP   + C  C +C SG+  LC   + A         
Sbjct: 62  EGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAG-------- 113

Query: 129 RKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGC-GVPTGLGAVW 187
               +S++G           +++Y       V KI      ++   + C GV       +
Sbjct: 114 ----YSVDG----------GYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGV-----TTY 154

Query: 188 N---TAKVEPGSIVAVFGLGTVG-LAVAEGAKAAGASRVIGIDIDPKK 231
                   +PG  VA++G+G +G +AV + AKA G   V+ +DI  +K
Sbjct: 155 KALKVTGAKPGEWVAIYGIGGLGHVAV-QYAKAMGL-NVVAVDIGDEK 200

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* Length = 370

 Score =  151 bits (385), Expect = 2e-44
 Identities = 53/227 (23%), Positives = 86/227 (37%), Gaps = 38/227 (16%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           KA         + + +V +  P   ++ +K+    +C TD +   G+ P    P  LGHE
Sbjct: 25  KAVRLESVGN-ISVRNVGIPEPGPDDLLVKVEACGICGTDRHLLHGEFPST-PPVTLGHE 82

Query: 71  AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRK 130
             GIV   G  V ++ PG  +       C  C  C++G+ NLC  +R             
Sbjct: 83  FCGIVVEAGSAVRDIAPGARITGDPNISCGRCPQCQAGRVNLCRNLR------------- 129

Query: 131 SRFSINGKPIYHFMGTST---FSQYTVVHDVSVAKIDPQAPLDKVCL---LGCGVPTGLG 184
                        +G      F++Y +V      +I              L C +     
Sbjct: 130 ------------AIGIHRDGGFAEYVLVPRKQAFEIPLTLDPVHGAFCEPLACCL----H 173

Query: 185 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
            V + + ++ GS VA+ G G +GL   + A+ AGA+ VI       K
Sbjct: 174 GV-DLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATK 219

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343

 Score =  151 bits (383), Expect = 3e-44
 Identities = 55/231 (23%), Positives = 88/231 (38%), Gaps = 41/231 (17%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLF----PCI 66
           +A     P + L + D  V  P  GE+ +++   ++C TD + W   D         P +
Sbjct: 2   RALAKLAPEEGLTLVDRPVPEPGPGEILVRVEAASICGTDLHIWKW-DAWARGRIRPPLV 60

Query: 67  LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
            GHE +G+VE+VG GV   Q GDHV       C  C  C++G  ++C   +         
Sbjct: 61  TGHEFSGVVEAVGPGVRRPQVGDHVSLESHIVCHACPACRTGNYHVCLNTQ--------- 111

Query: 127 NDRKSRFSINGKPIYHFMGTS---TFSQYTVVHDVSVAKIDPQAPLDKVCL---LGCGVP 180
                            +G      F++Y VV   +        P +   +    G  V 
Sbjct: 112 ----------------ILGVDRDGGFAEYVVVPAENAWVNPKDLPFEVAAILEPFGNAVH 155

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
           T             G  V + G G +GL  A   +A+GA  ++  D +P +
Sbjct: 156 TVY-----AGSGVSGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYR 201

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* Length = 348

 Score =  148 bits (376), Expect = 3e-43
 Identities = 61/231 (26%), Positives = 92/231 (39%), Gaps = 42/231 (18%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLF----PCI 66
            A +  +P     + +V V  P  GEV IK+L T++C TD + +   +         P I
Sbjct: 6   VAIMKTKPGYGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEW-NEWAQSRIKPPQI 64

Query: 67  LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           +GHE AG V  +G GV  ++ GD+V       C +C  C+ G+ ++C   +         
Sbjct: 65  MGHEVAGEVVEIGPGVEGIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTK--------- 115

Query: 127 NDRKSRFSINGKPIYHFMGTST---FSQYTVVHDVSVAKIDPQAPLDKVCL---LGCGVP 180
                             G  T   F++Y VV   ++ K     P +   L   LG  V 
Sbjct: 116 ----------------IFGVDTDGVFAEYAVVPAQNIWKNPKSIPPEYATLQEPLGNAVD 159

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
           T L           G  V + G G +GL     AKA+GA  VI  +    +
Sbjct: 160 TVLAG------PISGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFR 204

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} Length = 347

 Score =  147 bits (374), Expect = 5e-43
 Identities = 66/231 (28%), Positives = 101/231 (43%), Gaps = 37/231 (16%)

Query: 9   TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL-FPCIL 67
           T K  + +E +  L  +D+ V  P+A E+ I + ++ +CHTD + W G  P  +  P + 
Sbjct: 5   TQKGVIFYESHGKLEYKDIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPLPVKLPLVG 64

Query: 68  GHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           GHE AG+V  +GE V   + GD+  I      C  C++C+ G  + C     +       
Sbjct: 65  GHEGAGVVVGMGENVKGWKIGDYAGIKWLNGSCMACEYCELGNESNCPHADLSG------ 118

Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGC-GVPT--GL 183
                 ++ +G          +F QY     V  A I     L +V  + C G+     L
Sbjct: 119 ------YTHDG----------SFQQYATADAVQAAHIPQGTDLAQVAPILCAGITVYKAL 162

Query: 184 GAVWNTAKVEPGSIVAVFGLGTVGL---AVAEGAKAAGASRVIGIDIDPKK 231
                +A +  G  VA+ G    GL   AV + AKA G  RV+GID    K
Sbjct: 163 ----KSANLMAGHWVAISGAAG-GLGSLAV-QYAKAMGY-RVLGIDGGEGK 206

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Length = 346

 Score =  147 bits (373), Expect = 7e-43
 Identities = 56/228 (24%), Positives = 88/228 (38%), Gaps = 39/228 (17%)

Query: 11  KAAVAWEPNKPLVIEDVQV-APPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGH 69
           K+ V       + + +  +       EVR+KI  + LC +D       +    +P  LGH
Sbjct: 2   KSVVNDTDGI-VRVAESVIPEIKHQDEVRVKIASSGLCGSDLPRIFK-NGAHYYPITLGH 59

Query: 70  EAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDR 129
           E +G +++VG GV ++ PGD V       C  C  C  G  + C K              
Sbjct: 60  EFSGYIDAVGSGVDDLHPGDAVACVPLLPCFTCPECLKGFYSQCAKYD------------ 107

Query: 130 KSRFSINGKPIYHFMGTS---TFSQYTVVHDVSVAKIDPQAPLDKVCL---LGCGVPTGL 183
                        F+G+     F++Y VV   +V  +    P++       +  G+    
Sbjct: 108 -------------FIGSRRDGGFAEYIVVKRKNVFALPTDMPIEDGAFIEPITVGL---- 150

Query: 184 GAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
            A    A+      V + G GT+GL   + A A GA  V  IDI  +K
Sbjct: 151 HAFHL-AQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEK 197

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A Length = 356

 Score =  140 bits (355), Expect = 5e-40
 Identities = 55/237 (23%), Positives = 86/237 (36%), Gaps = 53/237 (22%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLF----PCI 66
            + V       L +E+  +  P   EV +++    +C +D + W      G F    P +
Sbjct: 9   LSLV-VHGPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEY-GRIGNFIVKKPMV 66

Query: 67  LGHEAAGIVESVGEGVTEVQPGDHV-----IPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           LGHEA+G VE VG  V  ++PGD V      P         +FCK G+ NL   +     
Sbjct: 67  LGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPR-----ENDEFCKMGRYNLSPSIF---- 117

Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTS----TFSQYTVVHDVSVAKIDPQAPLDKVCL--- 174
                                F  T        ++   +     K+      ++  L   
Sbjct: 118 ---------------------FCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEP 156

Query: 175 LGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
           L  G+     A      V  G  V V G G +G+     AKA GA++V+  D+   +
Sbjct: 157 LSVGI----HAC-RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATR 208

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* Length = 366

 Score =  137 bits (348), Expect = 4e-39
 Identities = 46/243 (18%), Positives = 82/243 (33%), Gaps = 39/243 (16%)

Query: 11  KAAVAWEPNKPLVIEDVQV-APPQAGEVRIKILFTALCHTDAYTWSGKD-----PEGLFP 64
           KA +   PN  + ++DV        G+++I+ ++  +C  D    +GK      P+G   
Sbjct: 2   KAIIVKPPNAGVQVKDVDEKKLDSYGKIKIRTIYNGICGADREIVNGKLTLSTLPKGKDF 61

Query: 65  CILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGV 124
            +LGHEA G+VE    G      GD V+P  +  C  C+ C  G+ + C        AG+
Sbjct: 62  LVLGHEAIGVVEESYHGF---SQGDLVMPVNRRGCGICRNCLVGRPDFCETGEF-GEAGI 117

Query: 125 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCL--LGCGVPT- 181
              D                G     ++       + KI        +    L     + 
Sbjct: 118 HKMD----------------GF--MREWWYDDPKYLVKIPKSIEDIGILAQPLADIEKSI 159

Query: 182 --------GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
                    +              V V G G +G+      +  G    +    +P + +
Sbjct: 160 EEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVE 219

Query: 234 RGM 236
           + +
Sbjct: 220 QTV 222

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} Length = 404

 Score =  137 bits (347), Expect = 2e-38
 Identities = 45/245 (18%), Positives = 78/245 (31%), Gaps = 50/245 (20%)

Query: 11  KAAVAWEPNKPLVIEDVQV-APPQAGEVRIKILFTALCHTDAYTWSGKDPEGLF------ 63
             +  W   + + +E+V      +  E+ IK+    +C +D +     +   +       
Sbjct: 32  LGSKVWRYPE-VRVEEVPEPRIEKPTEIIIKVKACGICGSDVHMAQTDEEGYILYPGLTG 90

Query: 64  -PCILGHEAAGIVESVGEGVTE------VQPGDHVIPCYQAECRECKFCKSGKTNLCGKV 116
            P  LGHE +G+V   G            + G+ V       C  C+ C  G  N C  +
Sbjct: 91  FPVTLGHEFSGVVVEAGPEAINRRTNKRFEIGEPVCAEEMLWCGHCRPCAEGFPNHCENL 150

Query: 117 RGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI-------DPQAPL 169
                 G          +++G           F++Y  V       +       +     
Sbjct: 151 NEL---GF---------NVDG----------AFAEYVKVDAKYAWSLRELEGVYEGDRLF 188

Query: 170 DKVCL---LGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 226
               L              +     + PG  V + G G +GLA     K AGAS+VI  +
Sbjct: 189 LAGSLVEPTSVAYN---AVIVRGGGIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSE 245

Query: 227 IDPKK 231
               +
Sbjct: 246 PSEVR 250

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} Length = 363

 Score =  135 bits (342), Expect = 3e-38
 Identities = 58/239 (24%), Positives = 84/239 (35%), Gaps = 48/239 (20%)

Query: 7   VITCKAAVAWEPNKPLVIEDVQVAP-PQAGEVRIKILFTALCHTD--AYTWSGKDPEGLF 63
           V T      W       +E VQ     + GEV + +  T +C +D   +        G  
Sbjct: 12  VFTNPQHDLWISEASPSLESVQKGEELKEGEVTVAVRSTGICGSDVHFWKH---GCIGPM 68

Query: 64  ----PCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGA 119
                 +LGHE+AG V +V   V  ++ GD V    Q  C  C+ C +G+ N C +V   
Sbjct: 69  IVECDHVLGHESAGEVIAVHPSVKSIKVGDRVAIEPQVICNACEPCLTGRYNGCERVD-- 126

Query: 120 TGAGVMMNDRKSRFSINGKPIYHFMGTS----TFSQYTVVHDVSVAKIDPQAPLDKVCL- 174
                                  F+ T        +Y     V   KI      +   + 
Sbjct: 127 -----------------------FLSTPPVPGLLRRYVNHPAVWCHKI-GNMSYENGAML 162

Query: 175 --LGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
             L   +     A    A V  G  V + G G +GL     AKAAGA  ++  DID  +
Sbjct: 163 EPLSVAL-----AGLQRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGR 216

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A Length = 352

 Score =  133 bits (338), Expect = 1e-37
 Identities = 51/222 (22%), Positives = 81/222 (36%), Gaps = 25/222 (11%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           K        K +   + +   P   +  ++ L  A C +D +T            ILGHE
Sbjct: 2   KGFAMLSIGK-VGWIEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIGERHNMILGHE 60

Query: 71  AAGIVESVGEGVTEVQPGDHVI-PCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDR 129
           A G V  VG  V + +PGD V+ P            + G     G   G        N  
Sbjct: 61  AVGEVVEVGSEVKDFKPGDRVVVPAITP-DWRTSEVQRGYHQHSG---GMLAGWKFSN-- 114

Query: 130 KSRFSINGKPIYHFMGTSTFSQYTVVH--DVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW 187
                 +G           F ++  V+  D+++A +  + PL+   ++   + TG     
Sbjct: 115 ----VKDG----------VFGEFFHVNDADMNLAHLPKEIPLEAAVMIPDMMTTGFHGAE 160

Query: 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229
             A ++ G  V V G+G VGL    GA   GA R+  +    
Sbjct: 161 L-ANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRK 201

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 Length = 352

 Score =  133 bits (338), Expect = 1e-37
 Identities = 62/231 (26%), Positives = 94/231 (40%), Gaps = 42/231 (18%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWS-GK--DPEGLFPCIL 67
            +AV       L +E   +  P+  EV +++ +  +C +D + +  G+  D     P ++
Sbjct: 6   LSAV-LYKQNDLRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVI 64

Query: 68  GHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMN 127
           GHEA+G V  VG+ V  ++ GD V       CR C+FCK GK NLC  +           
Sbjct: 65  GHEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLT---------- 114

Query: 128 DRKSRFSINGKPIYHFMGTS----TFSQYTVVHDVSVAKIDPQAPLDKVCL---LGCGVP 180
                          F  T       ++Y V       K+     L++  L   L  GV 
Sbjct: 115 ---------------FCATPPDDGNLARYYVHAADFCHKLPDNVSLEEGALLEPLSVGV- 158

Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
               A    A V+ G+ V V G G +GL     AKA GA  V+     P++
Sbjct: 159 ---HAC-RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAF-VVCTARSPRR 204

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* Length = 357

 Score =  129 bits (326), Expect = 7e-36
 Identities = 43/235 (18%), Positives = 76/235 (32%), Gaps = 36/235 (15%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK---DPEGLFPCIL 67
           KA          V+ +     P++GE  ++ L   +C TD    +G     PEG    +L
Sbjct: 2   KAIAVKRGEDRPVVIEKPRPEPESGEALVRTLRVGVCGTDHEVIAGGHGGFPEGEDHLVL 61

Query: 68  GHEAAGIVESVGEGVTEVQPGDHV--IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
           GHEA G+V  V    TE++ GD V             ++ +  + ++           V 
Sbjct: 62  GHEAVGVV--VDPNDTELEEGDIVVPTVRRPPASGTNEYFERDQPDMAPDGMYFERGIVG 119

Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCL---LGCGV-PT 181
                     +G            S++    +  + +I P++  +   L   +       
Sbjct: 120 A---------HG----------YMSEFFTSPEKYLVRI-PRSQAELGFLIEPISITEKAL 159

Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKA--AGASRVIGI---DIDPKK 231
                  +A     S   V G G++GL      K    G   +  +   D     
Sbjct: 160 EHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPT 214

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} Length = 398

 Score =  112 bits (283), Expect = 2e-29
 Identities = 58/233 (24%), Positives = 95/233 (40%), Gaps = 33/233 (14%)

Query: 13  AVAWEPNKPLVIEDVQ----VAP--PQAGEVRIKILFTALCHTDAYTWSGKDP--EGLFP 64
           +V +   + L +E V               V +K++ T +C +D + + G+    +G   
Sbjct: 5   SVVYHGTRDLRVETVPYPKLEHNNRKLEHAVILKVVSTNICGSDQHIYRGRFIVPKGH-- 62

Query: 65  CILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLC--GKVRGATGA 122
            +LGHE  G V   G  V  +  GD V   +   C  C+ CK  ++++C    V      
Sbjct: 63  -VLGHEITGEVVEKGSDVELMDIGDLVSVPFNVACGRCRNCKEARSDVCENNLVNPDADL 121

Query: 123 GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH--DVSVAKI----DPQAPLDKVCLLG 176
           G             G  +  + G    ++Y +V   D  + K          +  + L+ 
Sbjct: 122 G-----------AFGFDLKGWSGGQ--AEYVLVPYADYMLLKFGDKEQAMEKIKDLTLIS 168

Query: 177 CGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229
             +PTG     + A V+PGS V + G G VG   A GA+  GA+ VI  D +P
Sbjct: 169 DILPTGFHGCVS-AGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNP 220

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 Length = 398

 Score =  111 bits (280), Expect = 6e-29
 Identities = 65/234 (27%), Positives = 94/234 (40%), Gaps = 35/234 (14%)

Query: 13  AVAWEPNKPLVIEDVQVA-------PPQAGEVRIKILFTALCHTDAYTWSGKDP--EGLF 63
            V +  +  + ++ +                V +K++ T +C +D +   G+     GL 
Sbjct: 5   GVVYLGSGKVEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTAQVGL- 63

Query: 64  PCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAG 123
             +LGHE  G V   G  V  +Q GD V   +   C  C+ CK   T +C  V  A   G
Sbjct: 64  --VLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGG 121

Query: 124 VMMNDRKSRFSINGKPIYHFMGTSTFSQ--YTVVH--DVSVAKI----DPQAPLDKVCLL 175
                        G   Y  MG  T  Q  Y +V   D ++ K+         +  +  L
Sbjct: 122 -----------AYG---YVDMGDWTGGQAEYVLVPYADFNLLKLPDRDKAMEKIRDLTCL 167

Query: 176 GCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229
              +PTG       A V PGS V V G G VGLA A  A+  GA+ VI  D++P
Sbjct: 168 SDILPTGYHGAVT-AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP 220

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 369

 Score =  110 bits (277), Expect = 1e-28
 Identities = 63/238 (26%), Positives = 99/238 (41%), Gaps = 32/238 (13%)

Query: 3   TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL 62
            +   +  KA  A+   +PL   D+    P   +V+I+I +  +CH+D +    +    +
Sbjct: 16  YKKAGLKIKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTV 75

Query: 63  FPCILGHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATG 121
           +PC+ GHE  G V +VG+ V +  PGD V + C    C+ C+ C+ G  N C        
Sbjct: 76  YPCVPGHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYC-------- 127

Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTST---FSQYTVVHDVSVAKI-DPQAPLDKVCLLGC 177
                       + N           T   +SQ  VVH+  V +I  PQ  L  V  L C
Sbjct: 128 -------DHMTGTYNSP--TPDEPGHTLGGYSQQIVVHERYVLRIRHPQEQLAAVAPLLC 178

Query: 178 GVPTGLGAVWN---TAKVEPGSIVAVFGLGTVG-LAVAEGAKAAGASRVIGIDIDPKK 231
              T     ++     +  PG  V V G+G +G + + + A A GA  V+       K
Sbjct: 179 AGIT----TYSPLRHWQAGPGKKVGVVGIGGLGHMGI-KLAHAMGA-HVVAFTTSEAK 230

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* Length = 366

 Score =  105 bits (264), Expect = 7e-27
 Identities = 59/237 (24%), Positives = 93/237 (39%), Gaps = 41/237 (17%)

Query: 8   ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
           +      A + +  L   +         +VR K+L+  +CH+D ++        ++P + 
Sbjct: 15  VKAFGWAARDQSGHLSPFNFSRRATGEEDVRFKVLYCGVCHSDLHSIKNDWGFSMYPLVP 74

Query: 68  GHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           GHE  G V  VG  V +V  GD V + C    C  C+ C +   N C             
Sbjct: 75  GHEIVGEVTEVGSKVKKVNVGDKVGVGCLVGACHSCESCANDLENYC------------- 121

Query: 127 NDRKSRFSINGKPIYHFMGTST---FSQYTVVHDVSVAKIDPQAPLDKVCLLGC-GVPT- 181
              K   +       +  GT T   +S + V ++  + +     PLD    L C G+   
Sbjct: 122 --PKMILTYASI---YHDGTITYGGYSNHMVANERYIIRFPDNMPLDGGAPLLCAGITVY 176

Query: 182 ------GLGAVWNTAKVEPGSIVAVFGLGTVG-LAVAEGAKAAGASRVIGIDIDPKK 231
                 GL         EPG  + + GLG +G +AV + AKA G+ +V  I   P K
Sbjct: 177 SPLKYFGLD--------EPGKHIGIVGLGGLGHVAV-KFAKAFGS-KVTVISTSPSK 223

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} Length = 348

 Score =  104 bits (263), Expect = 9e-27
 Identities = 65/232 (28%), Positives = 102/232 (43%), Gaps = 30/232 (12%)

Query: 8   ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
           +  K    +  ++     D         +V I IL+  +CH+D ++   +  EG++P I 
Sbjct: 3   VQSKGFAIFSKDEHFKPHDFSRHAVGPRDVLIDILYAGICHSDIHSAYSEWKEGIYPMIP 62

Query: 68  GHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           GHE AGI++ VG+GV + + GD V + C+   C+ CK CK  +   C             
Sbjct: 63  GHEIAGIIKEVGKGVKKFKIGDVVGVGCFVNSCKACKPCKEHQEQFC------------- 109

Query: 127 NDRKSRFSINGKPIYHFMGTST---FSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGL 183
              K  F+ +    +H         +S   VV +  V  +D  APL+KV  L C   T  
Sbjct: 110 --TKVVFTYDCLDSFH-DNEPHMGGYSNNIVVDENYVISVDKNAPLEKVAPLLCAGIT-- 164

Query: 184 GAVWN---TAKVEPGSIVAVFGLGTVG-LAVAEGAKAAGASRVIGIDIDPKK 231
              ++    +KV  G+ V V G G +G +AV + A A GA  V     +  K
Sbjct: 165 --TYSPLKFSKVTKGTKVGVAGFGGLGSMAV-KYAVAMGA-EVSVFARNEHK 212

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* Length = 357

 Score =  102 bits (257), Expect = 7e-26
 Identities = 61/242 (25%), Positives = 87/242 (35%), Gaps = 37/242 (15%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
           M             A +P+  L      +      +V I+I+   +CHTD +        
Sbjct: 1   MGIMEAERKTTGWAARDPSGILSPYTYTLRETGPEDVNIRIICCGICHTDLHQTKNDLGM 60

Query: 61  GLFPCILGHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGA 119
             +P + GHE  G V  VG  V++   GD V + C    C  C  C+      C      
Sbjct: 61  SNYPMVPGHEVVGEVVEVGSDVSKFTVGDIVGVGCLVGCCGGCSPCERDLEQYC------ 114

Query: 120 TGAGVMMNDRKSRFSINGKPIYHFMGTST---FSQYTVVHDVSVAKIDPQAPLDKVCLLG 176
                     K  +S N     +  G  T   F++ TVVH   V KI     +++   L 
Sbjct: 115 ---------PKKIWSYNDV---YINGQPTQGGFAKATVVHQKFVVKIPEGMAVEQAAPLL 162

Query: 177 CGVPTGLGAV------WNTAKVEPGSIVAVFGLGTVG-LAVAEGAKAAGASRVIGIDIDP 229
           C   T    V      +   +  PG    + GLG VG + V + AKA G   V  I    
Sbjct: 163 CAGVT----VYSPLSHFGLKQ--PGLRGGILGLGGVGHMGV-KIAKAMGH-HVTVISSSN 214

Query: 230 KK 231
           KK
Sbjct: 215 KK 216

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} Length = 343

 Score = 97.7 bits (244), Expect = 4e-24
 Identities = 58/219 (26%), Positives = 90/219 (41%), Gaps = 31/219 (14%)

Query: 11  KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL-FPCIL 67
           +A V      P  L + D+ V  P   EVR+++   AL H D +   G     L  P +L
Sbjct: 2   RAVVMRARGGPEVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHVL 61

Query: 68  GHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLC--GKVRGATGAGVM 125
           G + +G+V++VG GV    PGD V+      C  C+ C +G+ NLC   ++ G    G  
Sbjct: 62  GADGSGVVDAVGPGVEGFAPGDEVVINPGLSCGRCERCLAGEDNLCPRYQILGEHRHG-- 119

Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
                                 T+++Y V+ + ++A        ++   +     T    
Sbjct: 120 ----------------------TYAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQM 157

Query: 186 VWNTAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVI 223
           V +   V PG  V V      V +A  + AK  GA RVI
Sbjct: 158 VVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVI 195

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A Length = 447

 Score = 98.4 bits (245), Expect = 6e-24
 Identities = 38/239 (15%), Positives = 77/239 (32%), Gaps = 44/239 (18%)

Query: 17  EPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG--------------- 61
           +  K L + +V +      EV + ++ +++ +   ++   +                   
Sbjct: 45  DVRKSLRLGEVPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQNARQGGWAT 104

Query: 62  ---LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRG 118
                  +LG + +G+V   G GV   +PGDHVI  + A   E +    G   L  + R 
Sbjct: 105 RHDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVI-VHPAHVDEQEPATHGDGMLGTEQRA 163

Query: 119 ATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCG 178
                             G            ++Y VV    +         ++  +    
Sbjct: 164 WGFETN-----------FG----------GLAEYGVVRASQLLPKPAHLTWEEAAVSPLC 202

Query: 179 VPTGLGAV--WNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
             T    +     A+++ G IV ++G  G +G    +  K  G    + +    +K   
Sbjct: 203 AGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGG-IPVAVVSSAQKEAA 260

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357

 Score = 92.3 bits (230), Expect = 4e-22
 Identities = 45/213 (21%), Positives = 77/213 (36%), Gaps = 55/213 (25%)

Query: 17  EPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK---DPEGLFPCILGHEAAG 73
           +P K + ++++++A  +  +VR+K+L   +  +D     G     PE   P + G+E   
Sbjct: 37  DPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPE--LPAVGGNEGVA 94

Query: 74  IVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRF 133
            V +VG  VT ++PGD VIP                                        
Sbjct: 95  QVVAVGSNVTGLKPGDWVIPA--------------------------------------- 115

Query: 134 SINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVE 193
                      G  T+    V  + ++ ++    PL     LG    T    + +  +++
Sbjct: 116 ---------NAGLGTWRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQ 166

Query: 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI 225
           PG  V        VG AV + A A G  R I +
Sbjct: 167 PGDSVIQNASNSGVGQAVIQIAAALGL-RTINV 198

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A Length = 360

 Score = 91.4 bits (228), Expect = 9e-22
 Identities = 53/240 (22%), Positives = 83/240 (34%), Gaps = 34/240 (14%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
           MS   +     A  + E  K          P    ++ IKI    +C +D +  +G    
Sbjct: 1   MSYPEKF-EGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGN 59

Query: 61  GLFPCILGHEAAGIVESVGEGV-TEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRG 118
              P ++GHE  G V  +G    + ++ G  V +      C EC  CK+     C     
Sbjct: 60  MKMPLVVGHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYC----- 114

Query: 119 ATGAGVMMNDRKSRFSINGKPIYHFMGTST---FSQYTVVHDVSVAKIDPQAPLDKVCLL 175
                      K   + +     +  G  +   ++ Y  VH+  V  I    P      L
Sbjct: 115 ----------TKFVTTYSQP---YEDGYVSQGGYANYVRVHEHFVVPIPENIPSHLAAPL 161

Query: 176 GCGVPTGLGAVWN---TAKVEPGSIVAVFGLGTVG-LAVAEGAKAAGASRVIGIDIDPKK 231
            CG  T    V++        PG  V + GLG +G +     +KA GA     I    +K
Sbjct: 162 LCGGLT----VYSPLVRNGCGPGKKVGIVGLGGIGSMGT-LISKAMGA-ETYVISRSSRK 215

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} Length = 363

 Score = 89.6 bits (223), Expect = 4e-21
 Identities = 46/203 (22%), Positives = 73/203 (35%), Gaps = 27/203 (13%)

Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL-FPCILGHEAAGIVESVGE 80
           L + +  V      ++ ++ L  +L + D           L FP +   + +G+VE+VG+
Sbjct: 41  LKLAERPVPEAGEHDIIVRTLAVSLNYRDKLVLETGMGLDLAFPFVPASDMSGVVEAVGK 100

Query: 81  GVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPI 140
            VT  +PGD VI  +     +     +G+T    +  G    GV                
Sbjct: 101 SVTRFRPGDRVISTFAPGWLDGLRPGTGRTPA-YETLGGAHPGV---------------- 143

Query: 141 YHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAV 200
                    S+Y V+ +             +   L C   T   A+     +  G  V V
Sbjct: 144 --------LSEYVVLPEGWFVAAPKSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVV 195

Query: 201 FGLGTVGLAVAEGAKAAGASRVI 223
            G G V L   + AKA GA  VI
Sbjct: 196 QGTGGVALFGLQIAKATGA-EVI 217

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A Length = 456

 Score = 89.1 bits (221), Expect = 1e-20
 Identities = 40/257 (15%), Positives = 78/257 (30%), Gaps = 47/257 (18%)

Query: 2   STEGQVITCKAAVAWE---PNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK- 57
           +         A +      P K + ++DV V     GE  + ++ +++ +   +T   + 
Sbjct: 35  TVHKDETEMFAGLETRDKDPRKSIHLDDVPVPELGPGEALVAVMASSVNYNSVHTSIFEP 94

Query: 58  -----------------DPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECR 100
                                L   ++G + AG+V   G GV   Q GD V+    +   
Sbjct: 95  LSTFGFLERYGRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCLSVEL 154

Query: 101 ECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSV 160
           E          +    +   G                            ++  +V    +
Sbjct: 155 ESSDG--HNDTMLDPEQRIWGFE--------------------TNFGGLAEIALVKSNQL 192

Query: 161 AKIDPQAPLDKVCLLGCGVPTGLGAV--WNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAA 217
                    ++    G    T    +   N A ++ G  V ++G  G +G    + A A 
Sbjct: 193 MPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALAG 252

Query: 218 GASRVIGIDIDPKKFDR 234
           GA   I +   P+K + 
Sbjct: 253 GA-NPICVVSSPQKAEI 268

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} Length = 340

 Score = 81.1 bits (201), Expect = 4e-18
 Identities = 40/226 (17%), Positives = 67/226 (29%), Gaps = 54/226 (23%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK-DP 59
           MS  G++I         P   L +E   + P +  EV +++L   +  +D    +G    
Sbjct: 1   MSLHGKLIQFHKF--GNPKDVLQVEYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAH 58

Query: 60  EGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGA 119
               P I G+E  GIVE+VG  V+    G  V+P                          
Sbjct: 59  RIPLPNIPGYEGVGIVENVGAFVSRELIGKRVLP-------------------------L 93

Query: 120 TGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGV 179
            G G                        T+ +Y       V  I           +    
Sbjct: 94  RGEG------------------------TWQEYVKTSADFVVPIPDSIDDFTAAQMYINP 129

Query: 180 PTGLGAVWNTAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIG 224
            T       T  ++   ++ V      +G   A+ ++     R+I 
Sbjct: 130 LTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIA 174

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* Length = 371

 Score = 76.7 bits (189), Expect = 2e-16
 Identities = 41/236 (17%), Positives = 61/236 (25%), Gaps = 59/236 (25%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
            A    + ++  V            +V +++   A+  +D    S +         LG +
Sbjct: 13  TALTVNDHDEVTVWNAAPCPMLPRDQVYVRVEAVAINPSD---TSMRGQFATPWAFLGTD 69

Query: 71  AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRK 130
            AG V +VG  VT +Q GD V                      G                
Sbjct: 70  YAGTVVAVGSDVTHIQVGDRV---------------------YGAQNEMCP--------- 99

Query: 131 SRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT--------- 181
                             FSQYTV      AKI      ++   L  G+ T         
Sbjct: 100 -----------RTPDQGAFSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTAGLAMKLLG 148

Query: 182 -GLGAVWNTAKVEPGSIVAVF---GLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
             L +            V V    G         +  + +G    I     P  FD
Sbjct: 149 LPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGY-IPIAT-CSPHNFD 202

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A Length = 364

 Score = 76.3 bits (188), Expect = 3e-16
 Identities = 37/255 (14%), Positives = 69/255 (27%), Gaps = 77/255 (30%)

Query: 7   VITCKAAVAWE---PNKPLVIEDVQVAPPQ--AGEVRIKILFTALCHTDAYTWSGK---- 57
           +IT +A +  +   P   L  +  ++        EV +K L + +  +D     G     
Sbjct: 1   MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSK 60

Query: 58  ------DPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTN 111
                           G+E    V  VG  V+ ++ GD VIP                  
Sbjct: 61  PAKTTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPS----------------- 103

Query: 112 LCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA---- 167
                                           +   T+  + + +D    K+   A    
Sbjct: 104 -------------------------------HVNFGTWRTHALGNDDDFIKLPNPAQSKA 132

Query: 168 -------PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF--GLGTVGLAVAEGAKAAG 218
                   +++   +     T    + +  K+ PG    +   G   VG   ++  K   
Sbjct: 133 NGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLN 192

Query: 219 ASRVIGIDIDPKKFD 233
               I +  D    D
Sbjct: 193 F-NSISVIRDRPNLD 206

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 327

 Score = 72.7 bits (179), Expect = 3e-15
 Identities = 44/209 (21%), Positives = 65/209 (31%), Gaps = 60/209 (28%)

Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 81
           L   +   A P   E++++     +   D Y  SG  P    P  LG EAAGIV  VG G
Sbjct: 16  LQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKVGSG 75

Query: 82  VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIY 141
           V  ++ GD V                                                +Y
Sbjct: 76  VKHIKAGDRV------------------------------------------------VY 87

Query: 142 HFMGTSTFSQYTVVHDVSVAKIDPQAPLDKV--CLLGCGVPTGLGA---VWNTAKVEPGS 196
                  +S    +     A +      ++     L      GL     +  T +++P  
Sbjct: 88  AQSALGAYSSVHNIIADKAAILPAAISFEQAAASFL-----KGLTVYYLLRKTYEIKPDE 142

Query: 197 IVAVFGL-GTVGLAVAEGAKAAGASRVIG 224
                   G VGL   + AKA GA ++IG
Sbjct: 143 QFLFHAAAGGVGLIACQWAKALGA-KLIG 170

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} Length = 321

 Score = 71.5 bits (176), Expect = 7e-15
 Identities = 40/231 (17%), Positives = 65/231 (28%), Gaps = 73/231 (31%)

Query: 11  KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-----EGLF 63
           KA    +   P  L + D      +  ++ IK+   +L   D  T +G        +   
Sbjct: 8   KAIQFDQFGPPKVLKLVDTPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKNNL 67

Query: 64  PCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAG 123
           P  LG++ +G V  +G  V  V  GD V                      G         
Sbjct: 68  PSGLGYDFSGEVIELGSDVNNVNIGDKV---------------------MGIAGFPDHPC 106

Query: 124 VMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP------QAPLDKVCLLGC 177
                                    +++Y      ++ +         QA          
Sbjct: 107 ------------------------CYAEYVCASPDTIIQK-LEKLSFLQA---------A 132

Query: 178 GVPTGLGAVWN---TAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIG 224
            +PT           A+V+ G +V +    G VG    + AK  G   VI 
Sbjct: 133 SLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGT-TVIT 182

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* Length = 325

 Score = 71.5 bits (176), Expect = 7e-15
 Identities = 25/70 (35%), Positives = 32/70 (45%)

Query: 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 81
          L   D +   P    V ++     L   D Y  SG  P    P  LG E AG+VE+VG+ 
Sbjct: 16 LEYVDFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPAPFLPSGLGAEGAGVVEAVGDE 75

Query: 82 VTEVQPGDHV 91
          VT  + GD V
Sbjct: 76 VTRFKVGDRV 85

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} Length = 343

 Score = 71.5 bits (176), Expect = 8e-15
 Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 2/83 (2%)

Query: 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSG--KDPEGLFPCILG 68
           AAV  E N P V+  +    P  G+V ++I  +     DA   +G     +   P ILG
Sbjct: 9  IAAVVEEANGPFVLRKLARPQPAPGQVLVQIEASGTNPLDAKIRAGEAPHAQQPLPAILG 68

Query: 69 HEAAGIVESVGEGVTEVQPGDHV 91
           + AG V +VG  V   + GD V
Sbjct: 69 MDLAGTVVAVGPEVDSFRVGDAV 91

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* Length = 334

 Score = 70.7 bits (174), Expect = 2e-14
 Identities = 48/209 (22%), Positives = 72/209 (34%), Gaps = 59/209 (28%)

Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 81
           +  ED  V      E+ IK  +T + + ++Y   G  P    P +LG EA+G V + G+G
Sbjct: 23  IKYEDYPVPSISEEELLIKNKYTGVNYIESYFRKGIYPCEK-PYVLGREASGTVVAKGKG 81

Query: 82  VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIY 141
           VT  + GD V                                                  
Sbjct: 82  VTNFEVGDQVA------------------------------------------------- 92

Query: 142 HFMGTSTFSQYTVVHDVS-VAKIDPQAPLDKVCLLGCGVPT-GLGA---VWNTAKVEPGS 196
            ++  STF+QY+ +     V K+ P+   D+   L        L A         V+ G 
Sbjct: 93  -YISNSTFAQYSKISSQGPVMKL-PKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGD 150

Query: 197 IVAVFGL-GTVGLAVAEGAKAAGASRVIG 224
            V +F   G VGL + +  K  GA   I 
Sbjct: 151 YVLLFAAAGGVGLILNQLLKMKGA-HTIA 178

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} Length = 333

 Score = 68.8 bits (169), Expect = 8e-14
 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 3/73 (4%)

Query: 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSG---KDPEGLFPCILGHEAAGIVESV 78
           V E+V+V  P  G+VR++     +   D Y  +G       G  P ++G EAA +VE V
Sbjct: 16 FVWEEVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPIVVGFEAAAVVEEV 75

Query: 79 GEGVTEVQPGDHV 91
          G GVT+   G+ V
Sbjct: 76 GPGVTDFTVGERV 88

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} Length = 315

 Score = 68.4 bits (168), Expect = 9e-14
 Identities = 12/84 (14%), Positives = 25/84 (29%), Gaps = 3/84 (3%)

Query: 11 KAAVAWE---PNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
          +    W        + +  V +    A ++ ++     +   D               + 
Sbjct: 3  EQHQVWAYQTKTHSVTLNSVDIPALAADDILVQNQAIGINPVDWKFIKANPINWSNGHVP 62

Query: 68 GHEAAGIVESVGEGVTEVQPGDHV 91
          G + AG++  VG  V     G  V
Sbjct: 63 GVDGAGVIVKVGAKVDSKMLGRRV 86

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} Length = 342

 Score = 67.2 bits (165), Expect = 3e-13
 Identities = 45/219 (20%), Positives = 68/219 (31%), Gaps = 57/219 (26%)

Query: 11  KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--DPEGLFPCI 66
           KA  A   + P  LV  DV+        V + +    +C  D     G+        P +
Sbjct: 23  KAIQAQSLSGPEGLVYTDVETPGAGPNVVVVDVKAAGVCFPDYLMTKGEYQLKMEP-PFV 81

Query: 67  LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
            G E AG+V S  EG + ++PGD V+                              G   
Sbjct: 82  PGIETAGVVRSAPEG-SGIKPGDRVM-------------------------AFNFIG--- 112

Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
                                 +++   V   ++    PQ    +   L     T   A 
Sbjct: 113 ---------------------GYAERVAVAPSNILPTPPQLDDAEAVALIANYHTMYFAY 151

Query: 187 WNTAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIG 224
               ++  G  V V G  G +G A  + AK  GA +VI 
Sbjct: 152 ARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIA 189

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} Length = 349

 Score = 66.5 bits (163), Expect = 5e-13
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 5/86 (5%)

Query: 11 KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--DPEGLFPCI 66
          +A V         L +    +  PQ GE++I++    L   D     G   +P    P +
Sbjct: 5  RAVVLAGFGGLNKLRLFRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKT-PLV 63

Query: 67 LGHEAAGIVESVGEGVTEVQPGDHVI 92
           G E +GIVE++G+ V   + GD V+
Sbjct: 64 PGFECSGIVEALGDSVKGYEIGDRVM 89

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* Length = 362

 Score = 66.5 bits (163), Expect = 6e-13
 Identities = 36/230 (15%), Positives = 61/230 (26%), Gaps = 60/230 (26%)

Query: 1   MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
             +  Q +              +  D  V  P  G++ ++  F  +  +D    +G+   
Sbjct: 20  FQSMMQKLVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDP 79

Query: 61  G-LFPCILGHEAAGIVESVGEGVTE-VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRG 118
               P  +G E  G V ++G   +     G  V                           
Sbjct: 80  SVKPPFDIGFEGIGEVVALGLSASARYTVGQAVA-------------------------- 113

Query: 119 ATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCG 178
                                   +M   +F++YTVV       +    P      L   
Sbjct: 114 ------------------------YMAPGSFAEYTVVPASIATPVPSVKPE----YLTLL 145

Query: 179 VP--TGLGAVWNTAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGI 225
           V   T   ++     +  G  V V    G  G    + +K A    VIG 
Sbjct: 146 VSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGT 194

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 Length = 351

 Score = 65.3 bits (160), Expect = 1e-12
 Identities = 41/209 (19%), Positives = 73/209 (34%), Gaps = 61/209 (29%)

Query: 23  VIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--DPEGLFPCILGHEAAGIVESVGE 80
           +  D+ V  P+  +V IK+    +   + Y  SG       L P   G + AG++E+VG+
Sbjct: 46  LRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLL-PYTPGSDVAGVIEAVGD 104

Query: 81  GVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPI 140
             +  + GD V                             G                   
Sbjct: 105 NASAFKKGDRVF--------------------TSSTIS--GG------------------ 124

Query: 141 YHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW----NTAKVEPGS 196
                   +++Y +  D +V K+  +    +    G  +       +    ++A V+ G 
Sbjct: 125 --------YAEYALAADHTVYKLPEKLDFKQ----GAAIGIPYFTAYRALIHSACVKAGE 172

Query: 197 IVAVFG-LGTVGLAVAEGAKAAGASRVIG 224
            V V G  G VGLA  + A+A G  +++G
Sbjct: 173 SVLVHGASGGVGLAACQIARAYGL-KILG 200

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} Length = 363

 Score = 62.0 bits (151), Expect = 2e-11
 Identities = 19/75 (25%), Positives = 37/75 (49%)

Query: 17  EPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVE 76
             +  L+  ++    P   ++ +++   ++   D        P+G    ++G++AAGIV 
Sbjct: 35  TDDASLLDIELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTPPDGTDWKVIGYDAAGIVS 94

Query: 77  SVGEGVTEVQPGDHV 91
           +VG  VT  +PGD V
Sbjct: 95  AVGPDVTLFRPGDEV 109

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} Length = 353

 Score = 60.7 bits (148), Expect = 5e-11
 Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 5/86 (5%)

Query: 11  KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--DPEGLFPCI 66
           +         P  +VI    +     GEV ++     +   D     G    P+     I
Sbjct: 30  RFVDLKSFGGPDVMVIGKRPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPPPKDA-SPI 88

Query: 67  LGHEAAGIVESVGEGVTEVQPGDHVI 92
           LG E +G +  VG GV+    GD V 
Sbjct: 89  LGLELSGEIVGVGPGVSGYAVGDKVC 114

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Length = 349

 Score = 60.3 bits (147), Expect = 6e-11
 Identities = 29/228 (12%), Positives = 53/228 (23%), Gaps = 59/228 (25%)

Query: 5   GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--DPEGL 62
           G   T   +        L    + V  P   +V IK+   ++  +D     G+   P   
Sbjct: 20  GYTKTPSGSALEAMEPYLEQGRIAVPAPGPSQVLIKVNLASINPSDVAFIKGQYGQPRVK 79

Query: 63  FPCILGHEAAGIVESVGEGV-TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
                G E  G + + G+    +   G  V                          G + 
Sbjct: 80  -GRPAGFEGVGTIVAGGDEPYAKSLVGKRVAF----------------------ATGLSN 116

Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G                        ++++Y V    +   +      +     G  +  
Sbjct: 117 WG------------------------SWAEYAVAEAAACIPLLDTVRDED----GAAMIV 148

Query: 182 GLGAVWN---TAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGI 225
                       K E      +      +   +   AK  G  R I  
Sbjct: 149 NPLTAIAMFDIVKQEGEKAFVMTAGASQLCKLIIGLAKEEGF-RPIVT 195

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} Length = 346

 Score = 59.2 bits (144), Expect = 2e-10
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 7/89 (7%)

Query: 8  ITCKAAVAWEP-----NKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL 62
          ++ KA    +P            ++ +  P+  E+ +KI   ++   D         +  
Sbjct: 1  MSLKAIGFEQPFKLSDGNLFKTFNLDIPEPKVHEILVKIQSISVNPVDTKQRLMDVSK-- 58

Query: 63 FPCILGHEAAGIVESVGEGVTEVQPGDHV 91
           P +LG +A G+VESVG  VT    GD V
Sbjct: 59 APRVLGFDAIGVVESVGNEVTMFNQGDIV 87

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} Length = 795

 Score = 57.4 bits (139), Expect = 9e-10
 Identities = 28/71 (39%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 81
           LV E    AP   GEVRI +    +   DA    G  P       LG E AG+V   G G
Sbjct: 226 LVDEPTATAPLGDGEVRIAMRAAGVNFRDALIALGMYPG---VASLGSEGAGVVVETGPG 282

Query: 82  VTEVQPGDHVI 92
           VT + PGD V+
Sbjct: 283 VTGLAPGDRVM 293

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} Length = 375

 Score = 56.3 bits (136), Expect = 2e-09
 Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 19/100 (19%)

Query: 11  KAAVAWEPNKPLVI---EDVQV-APPQAGEVRIKILFTALCHTDAYTWSGKDPEGL---- 62
            A V  +  K  V+   +++ +       EV +K+   ++   D    SG     L    
Sbjct: 23  MAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKR 82

Query: 63  -----------FPCILGHEAAGIVESVGEGVTEVQPGDHV 91
                      FP  LG + +G+V   G  V   +PGD V
Sbjct: 83  DPLHVKIKGEEFPLTLGRDVSGVVMECGLDVKYFKPGDEV 122

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* Length = 354

 Score = 53.8 bits (130), Expect = 1e-08
 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 6/86 (6%)

Query: 11  KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--DPEGLFPCI 66
            A    +P  P  L +++V    P  GEV +K+  +AL   D     G+   P G    I
Sbjct: 24  LAVHFDKPGGPENLYVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDPPPGA-SNI 82

Query: 67  LGHEAAGIVESVGEGV-TEVQPGDHV 91
           LG EA+G V  +G G     + GD  
Sbjct: 83  LGLEASGHVAELGPGCQGHWKIGDTA 108

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} Length = 379

 Score = 53.0 bits (127), Expect = 2e-08
 Identities = 18/99 (18%), Positives = 28/99 (28%), Gaps = 29/99 (29%)

Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSG--------------------KDPEG 61
           L ++ +    P   EV I+I  + L  +D     G                    + PEG
Sbjct: 20  LSLDSIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAERPIVTARVPEG 79

Query: 62  LF---------PCILGHEAAGIVESVGEGVTEVQPGDHV 91
                         +G+E AG+V   G            
Sbjct: 80  AMRSMAGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKT 118

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D Length = 302

 Score = 46.4 bits (111), Expect = 2e-06
 Identities = 36/220 (16%), Positives = 56/220 (25%), Gaps = 72/220 (32%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--DPEGLFPCILG 68
           KA V      PL + D+     + GEV +++    L   D     G         P I G
Sbjct: 2   KAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHP-PFIPG 60

Query: 69  HEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128
            E  G+VE           G                                  G     
Sbjct: 61  MEVVGVVE-----------GRRYA-------------------------ALVPQG----- 79

Query: 129 RKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN 188
                                ++   V   ++  +      ++        P      + 
Sbjct: 80  -------------------GLAERVAVPKGALLPLPEGLSPEE----AAAFPVSFLTAYL 116

Query: 189 ---TAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIG 224
               A+  PG  V V    G +G A  + A+A G  RV+ 
Sbjct: 117 ALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLA 155

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* Length = 144

 Score = 38.1 bits (89), Expect = 7e-04
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
            AV GLG  G ++ +     G   V+ +DI+ +K + 
Sbjct: 9   FAVIGLGRFGGSIVKELHRMGHE-VLAVDINEEKVNA 44

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} Length = 141

 Score = 37.6 bits (88), Expect = 8e-04
 Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
             V G    G+ +     AAG  +V+ +D   +K + 
Sbjct: 9   YIVIGSEAAGVGLVRELTAAGK-KVLAVDKSKEKIEL 44

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	246
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	100.0
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	100.0
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	100.0
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	100.0
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	100.0
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	100.0
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	100.0
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	100.0
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	100.0
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	100.0
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	100.0
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	100.0
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	100.0
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	100.0
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	100.0
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	100.0
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	100.0
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	100.0
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	100.0
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	100.0
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	100.0
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	100.0
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	100.0
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	100.0
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	100.0
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	100.0
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	100.0
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	100.0
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	100.0
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	100.0
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	100.0
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	100.0
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	100.0
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	100.0
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	100.0
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	100.0
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	100.0
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	100.0
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	100.0
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	100.0
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	100.0
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	100.0
3gms_A	340	Putative NADPH:quinone reductase; structural genom	100.0
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	100.0
4eye_A	342	Probable oxidoreductase; structural genomics, niai	100.0
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	100.0
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	100.0
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	100.0
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	100.0
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	100.0
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	100.0
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	100.0
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	100.0
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	100.0
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	100.0
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	100.0
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	100.0
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	100.0
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	100.0
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	100.0
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	100.0
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	100.0
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	100.0
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	100.0
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	99.97
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	99.96
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	99.96
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.84
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	99.35
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.58
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	98.32
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	97.48
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	97.46
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	97.41
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	97.34
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	97.31
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	97.29
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	97.18
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	96.97
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.95
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	96.76
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.72
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	96.68
3c85_A	183	Putative glutathione-regulated potassium-efflux S	96.63
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	96.53
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	96.51
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.44
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	96.31
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	96.21
2b25_A	336	Hypothetical protein; structural genomics, methyl	96.18
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.15
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	96.11
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	95.95
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	95.91
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	95.87
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	95.77
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	95.69
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	95.64
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	95.62
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	95.56
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	95.44
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	95.43
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	95.4
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	95.37
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	95.36
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	95.36
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	95.36
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	95.35
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	95.35
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	95.34
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	95.29
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	95.28
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	95.26
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	95.26
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	95.23
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	95.23
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	95.21
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	95.2
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	95.2
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	95.18
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	95.18
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	95.18
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	95.17
4dqx_A	277	Probable oxidoreductase protein; structural genomi	95.16
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	95.16
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	95.16
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	95.16
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	95.14
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	95.13
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	95.13
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	95.12
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	95.11
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	95.11
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	95.11
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	95.1
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	95.08
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	95.08
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.04
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	95.02
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	95.01
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	94.99
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	94.99
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	94.98
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	94.98
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	94.95
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	94.93
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	94.92
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	94.92
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	94.86
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	94.85
3cxt_A	291	Dehydrogenase with different specificities; rossma	94.83
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	94.82
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	94.82
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	94.74
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	94.74
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	94.72
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	94.7
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	94.7
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	94.7
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	94.69
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	94.67
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	94.66
3rih_A	293	Short chain dehydrogenase or reductase; structural	94.64
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	94.62
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	94.6
1xhl_A	297	Short-chain dehydrogenase/reductase family member	94.59
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	94.54
1xq1_A	266	Putative tropinone reducatse; structural genomics,	94.51
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	94.46
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	94.42
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	94.42
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	94.4
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	94.39
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	94.36
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	94.35
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	94.34
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	94.19
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	94.16
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	94.12
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	94.08
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	94.07
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	94.07
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	94.04
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	94.03
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	94.02
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	94.01
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	93.99
1id1_A	153	Putative potassium channel protein; RCK domain, E.	93.97
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	93.96
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	93.9
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	93.89
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	93.84
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	93.77
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	93.71
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	93.65
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	93.64
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	93.63
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	93.57
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	93.56
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	93.5
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	93.5
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	93.5
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	93.49
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	93.48
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	93.42
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	93.41
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	93.32
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	93.3
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	93.25
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	93.21
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	93.2
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	93.17
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	93.13
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	93.05
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	93.03
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	93.02
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	93.0
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	92.99
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	92.95
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	92.86
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	92.83
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	92.81
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	92.78
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	92.77
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	92.76
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	92.75
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	92.75
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	92.71
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	92.71
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	92.7
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	92.66
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	92.64
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	92.63
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	92.63
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	92.62
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	92.61
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	92.61
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	92.5
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	92.43
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	92.4
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	92.39
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	92.3
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	92.26
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	92.25
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	92.16
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	92.15
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	92.15
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	92.15
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	92.13
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	92.1
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	92.04
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	91.96
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	91.88
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	91.87
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	91.84
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	91.8
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	91.78
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	91.74
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	91.72
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	91.71
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	91.66
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	91.62
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	91.62
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	91.62
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	91.51
3qp9_A	525	Type I polyketide synthase pikaii; rossmann fold,	91.41
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	91.38
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	91.34
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	91.27
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	91.26
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	91.25
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	91.24
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	91.2
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	91.17
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	91.05
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	90.96
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	90.86
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	90.84
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	90.83
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	90.8
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	90.75
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	90.72
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	90.66
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	90.63
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	90.55
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	90.38
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	90.31
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	90.24
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	90.24
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	90.21
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	90.13
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	90.09
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	89.92
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	89.85
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	89.7
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	89.67
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	89.67
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	89.62
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	89.6
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	89.57
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	89.54
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	89.41
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	89.26
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	89.13
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	89.11
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	89.1
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	89.1
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	89.1
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	89.03
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	88.88
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	88.74
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	88.67
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	88.64
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	88.63
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	88.61
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	88.55
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	88.55
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	88.46
3qha_A	296	Putative oxidoreductase; seattle structural genomi	88.46
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	88.43
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	88.41
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	88.4
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	88.29
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	88.24
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	88.19
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	88.1
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	88.04
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	88.01
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	87.95
4f6c_A	427	AUSA reductase domain protein; thioester reductase	87.95
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	87.87
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	87.86
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	87.7
3l07_A	285	Bifunctional protein fold; structural genomics, ID	87.69
3on5_A	362	BH1974 protein; structural genomics, joint center	87.64
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	87.63
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	87.5
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	87.46
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	87.44
2bry_A	497	NEDD9 interacting protein with calponin homology a	87.41
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	87.3
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	87.26
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	87.25
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	87.24
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	87.22
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	87.06
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	87.02
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	86.96
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	86.95
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	86.92
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	86.89
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	86.88
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	86.79
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	86.78
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	86.74
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	86.72
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	86.56
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	86.49
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	86.48
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	86.47
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	86.45
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	86.42
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	86.39
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	86.38
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	86.34
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	86.11
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	86.1
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	86.1
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	86.09
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	86.07
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	86.01
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	85.77
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	85.62
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	85.57
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	85.55
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	85.55
3zu3_A	405	Putative reductase YPO4104/Y4119/YP_4011; oxidored	85.46
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	85.38
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	85.36
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	85.16
2pqm_A	343	Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.8	85.12
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	85.08
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	85.02
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	84.85
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	84.77
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	84.59
4eue_A	418	Putative reductase CA_C0462; TER, biofuel, synthet	84.58
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	84.52
2v03_A	303	Cysteine synthase B; pyridoxal phosphate, cysteine	84.5
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	84.4
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	84.22
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	84.16
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	84.14
2o2s_A	315	Enoyl-acyl carrier reductase; enoyl reductase, tri	84.13
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	84.11
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	84.08
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	84.03
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	84.03
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	84.03
4ezb_A	317	Uncharacterized conserved protein; structural geno	83.94
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	83.91
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	83.89
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	83.89
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	83.85
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	83.83
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	83.72
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	83.66
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	83.61
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	83.57
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	83.54
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	83.44
1y7l_A	316	O-acetylserine sulfhydrylase, O-acetylserine (thio	83.26
3nx6_A	95	10KDA chaperonin; bacterial blight, XOO4289, groes	83.25
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	83.2
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	82.93
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	82.67
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	82.51
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	82.49
3f4k_A	257	Putative methyltransferase; structural genomics, P	82.43
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	82.39
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	82.22
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	82.15
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	82.14
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	82.0
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	81.99
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	81.94
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	81.65
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	81.64
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	81.64
3tbh_A	334	O-acetyl serine sulfhydrylase; cysteine synthase,	81.59
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	81.52
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	81.47
2q3b_A	313	Cysteine synthase A; pyridoxal-5'-phosphate, sulph	81.46
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	81.38
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	81.35
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	81.3
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	81.3
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	81.24
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	81.13
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	81.06
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	81.04
1jbq_A	435	B, cystathionine beta-synthase, serine sulfhydrase	81.0
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	80.99
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	80.86
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	80.86
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	80.85
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	80.84
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	80.79
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	80.73
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	80.71
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	80.65
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	80.49
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	80.45
2ptg_A	319	Enoyl-acyl carrier reductase; apicomplexa, enoyl (	80.42
3dwg_A	325	Cysteine synthase B; sulfur carrier protein comple	80.39
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	80.32
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	80.22
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	80.21
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	80.06
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	80.05
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	80.02

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=100.00  E-value=9.2e-49  Score=348.39  Aligned_cols=239  Identities=90%  Similarity=1.436  Sum_probs=221.0

Q ss_pred             CCcccceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCC
Q 025895            4 EGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVT   83 (246)
Q Consensus         4 ~~~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~   83 (246)
                      ..++++|||+++++++++++++|+|.|+|++|||+|||++++||++|++++.+..+...+|.++|||++|+|+++|++++
T Consensus         3 ~~~~~tmkA~v~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~v~   82 (378)
T 3uko_A            3 QGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVT   82 (378)
T ss_dssp             TTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHTTCCTTCCSSBCCCCEEEEEEEEECTTCC
T ss_pred             cccceeeEEEEEecCCCccEEEEecCCCCCCCeEEEEEEEeecCHHHHHHhcCCCCCCCCCccCCccceEEEEEeCCCCC
Confidence            46789999999999999999999999999999999999999999999999999877668899999999999999999999


Q ss_pred             ccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEc
Q 025895           84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI  163 (246)
Q Consensus        84 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i  163 (246)
                      +|++||||+..+..+|+.|.+|.+|+.+.|.+.......|....+|...+..+|...+.....|+|+||+.+|.+.++++
T Consensus        83 ~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~i  162 (378)
T 3uko_A           83 EVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGVGIMMNDRKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKI  162 (378)
T ss_dssp             SCCTTCEEEECSSCCCSSSHHHHHTSCSCCCSSHHHHTTTCCTTTSSCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEEC
T ss_pred             cCCCCCEEEEecCCCCCCChhhhCcCcCcCcCcccccccccccccCccccccCCcccccccCCcceEeEEEechhheEEC
Confidence            99999999999999999999999999999998765444555546666677778888877788899999999999999999


Q ss_pred             CCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       164 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      |+++++++|+.+++++.|||+++.+..+++++++|||+|+|++|++++|+|+.+|+.+|++++++++|+++++++|++.
T Consensus       163 P~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~  241 (378)
T 3uko_A          163 DPTAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNE  241 (378)
T ss_dssp             CTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCE
T ss_pred             CCCCCHHHhhhhhhhHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcE
Confidence            9999999999999999999999888899999999999999999999999999999988999999999999999999983

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=100.00  E-value=4.4e-47  Score=336.93  Aligned_cols=239  Identities=55%  Similarity=0.960  Sum_probs=206.8

Q ss_pred             CCCCCcccceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCC
Q 025895            1 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGE   80 (246)
Q Consensus         1 m~~~~~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~   80 (246)
                      |++.+.+++|||+++++++++++++|+|.|+|++|||+|||++++||++|++++.|.++ ..+|.++|||++|+|+++|+
T Consensus         1 ~~~~~~p~~mka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~-~~~P~v~GhE~~G~V~~vG~   79 (373)
T 1p0f_A            1 MCTAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIP-SKFPVILGHEAVGVVESIGA   79 (373)
T ss_dssp             -CCTTSCEEEEEEEBSSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC-CCSSBCCCCCEEEEEEEECT
T ss_pred             CcccCCcceeEEEEEEcCCCCeeEEEeeCCCCCCCeEEEEEeEEeecchhHHHhcCCCC-CCCCcccCcCceEEEEEECC
Confidence            89889999999999999987799999999999999999999999999999999988765 46799999999999999999


Q ss_pred             CCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCce
Q 025895           81 GVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSV  160 (246)
Q Consensus        81 ~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  160 (246)
                      ++++|++||||++.+...|+.|.+|.+|..+.|.+.....+.|.. .+|..++...|.+.+.....|+|+||+++|++.+
T Consensus        80 ~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~-~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~  158 (373)
T 1p0f_A           80 GVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLM-ADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAV  158 (373)
T ss_dssp             TCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSC-TTSCCSEEETTEEEBCSTTTCCSBSEEEEETTSE
T ss_pred             CCCccCCCCEEEECCCCCCCCChhhcCCCcCcCcCCCcccccccc-cCCccccccCCcccccccCCccceeEEEEchhhE
Confidence            999999999999999999999999999999999986532111221 1221111122222333334579999999999999


Q ss_pred             EEcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCC
Q 025895          161 AKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVS  240 (246)
Q Consensus       161 ~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~  240 (246)
                      +++|++++++ |+.+++++.|||+++.+..+++++++|||+|+|++|++++|+|+.+|+.+|++++++++|+++++++|+
T Consensus       159 ~~iP~~l~~~-aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa  237 (373)
T 1p0f_A          159 AKIDPKAPLE-SCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGA  237 (373)
T ss_dssp             EEECTTCCGG-GGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTC
T ss_pred             EECCCCCChh-hhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC
Confidence            9999999999 999999999999988788899999999999999999999999999999789999999999999999999


Q ss_pred             Cc
Q 025895          241 SS  242 (246)
Q Consensus       241 ~~  242 (246)
                      +.
T Consensus       238 ~~  239 (373)
T 1p0f_A          238 TE  239 (373)
T ss_dssp             SE
T ss_pred             cE
Confidence            83

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.1e-45  Score=328.14  Aligned_cols=238  Identities=58%  Similarity=1.014  Sum_probs=205.1

Q ss_pred             CCCcccceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhh-hhcCCCCCCCCCcccccceEEEEEEcCCC
Q 025895            3 TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAY-TWSGKDPEGLFPCILGHEAAGIVESVGEG   81 (246)
Q Consensus         3 ~~~~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~-~~~~~~~~~~~p~v~G~e~vG~V~~vG~~   81 (246)
                      |...+++|||+++++++++++++|+|.|+|++|||+|||.+++||++|++ ++.|.++ ..+|.++|||++|+|+++|++
T Consensus         2 ~~~~~~~mka~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~-~~~P~v~GhE~~G~V~~vG~~   80 (374)
T 1cdo_A            2 TVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHK-DGFPVVLGHEGAGIVESVGPG   80 (374)
T ss_dssp             CTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCCT-TSCSEECCCCEEEEEEEECTT
T ss_pred             CCCCcceeEEEEEecCCCCeEEEEeeCCCCCCCEEEEEEeEEeechhhHHHHhCCCCC-CCCCcccCccceEEEEEECCC
Confidence            45678899999999998789999999999999999999999999999999 8888655 467999999999999999999


Q ss_pred             CCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceE
Q 025895           82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVA  161 (246)
Q Consensus        82 ~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  161 (246)
                      +++|++||||++.+..+|+.|.+|.+|..+.|.+.+...+.|.. .+|..++...|.+.+.....|+|+||+++|++.++
T Consensus        81 V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~-~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~  159 (374)
T 1cdo_A           81 VTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVM-SPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVA  159 (374)
T ss_dssp             CCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTT-SCSCCCEEETTEEEEEGGGTCCSBSEEEEEGGGEE
T ss_pred             CccCCCCCEEEeCCCCCCCCChhhcCCCcCcCCCcccccccccc-cCCccccccCCcccccccCCccceeEEEEchhheE
Confidence            99999999999999999999999999999999976532111221 12211122222223333345799999999999999


Q ss_pred             EcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          162 KIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       162 ~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      ++|+++++++|+.+++++.|||+++.+..+++++++|||+|+|++|++++|+|+.+|+.+|++++++++|+++++++|++
T Consensus       160 ~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~  239 (374)
T 1cdo_A          160 KIDPSAPLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGAT  239 (374)
T ss_dssp             ECCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCC
T ss_pred             ECCCCCCHHHHhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCc
Confidence            99999999999999999999999887888999999999999999999999999999997899999999999999999998


Q ss_pred             c
Q 025895          242 S  242 (246)
Q Consensus       242 ~  242 (246)
                      .
T Consensus       240 ~  240 (374)
T 1cdo_A          240 D  240 (374)
T ss_dssp             E
T ss_pred             e
Confidence            3

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=100.00  E-value=1.6e-45  Score=326.96  Aligned_cols=237  Identities=55%  Similarity=0.932  Sum_probs=203.6

Q ss_pred             CCcccceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCC
Q 025895            4 EGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVT   83 (246)
Q Consensus         4 ~~~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~   83 (246)
                      -..+++|||+++++++++++++|+|.|+|++|||+|||++++||++|++++.|.++.. +|.++|||++|+|+++|++++
T Consensus         3 ~~~~~~mkA~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~-~P~v~GhE~~G~V~~vG~~v~   81 (374)
T 2jhf_A            3 AGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP-LPVIAGHEAAGIVESIGEGVT   81 (374)
T ss_dssp             TTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSCCC-SSBCCCCSEEEEEEEECTTCC
T ss_pred             CCCceeEEEEEEecCCCceEEEEccCCCCCCCeEEEEEeEEeechhhHHHHcCCCCCC-CCcccCcCceEEEEEECCCCC
Confidence            3457899999999998779999999999999999999999999999999998876543 799999999999999999999


Q ss_pred             ccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEc
Q 025895           84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI  163 (246)
Q Consensus        84 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i  163 (246)
                      +|++||||++.+...|+.|.+|.+|..+.|.+.....+.|.. .+|...+...|.+.+.....|+|+||+++|++.++++
T Consensus        82 ~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~-~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~i  160 (374)
T 2jhf_A           82 TVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTM-QDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKI  160 (374)
T ss_dssp             SCCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSC-TTSCCSEEETTEEEBCSTTTCCSBSEEEEEGGGEEEC
T ss_pred             CCCCCCEEEECCCCCCCCCccccCCCcCcCCCCccccccccc-cCCcccccccccccccccCCccCeeEEEEchHHeEEC
Confidence            999999999999999999999999999999986532111221 1221111112222222234579999999999999999


Q ss_pred             CCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       164 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      |+++++++|+.+++++.|||+++.+..+++++++|||+|+|++|++++|+|+.+|+.+|++++++++|+++++++|++.
T Consensus       161 P~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~  239 (374)
T 2jhf_A          161 DAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE  239 (374)
T ss_dssp             CTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSE
T ss_pred             CCCCCHHHhhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCce
Confidence            9999999999999999999998878889999999999999999999999999999978999999999999999999983

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=100.00  E-value=1.7e-45  Score=326.98  Aligned_cols=236  Identities=53%  Similarity=0.968  Sum_probs=201.6

Q ss_pred             CcccceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCc
Q 025895            5 GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTE   84 (246)
Q Consensus         5 ~~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~   84 (246)
                      ..+++|||+++++++++++++|+|.|+|++|||+|||++++||++|++++.|. +...+|.++|||++|+|+++|+++++
T Consensus         4 ~~p~~mka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~-~~~~~P~v~GhE~~G~V~~vG~~v~~   82 (376)
T 1e3i_A            4 GKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPK-KKALFPVVLGHECAGIVESVGPGVTN   82 (376)
T ss_dssp             TSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHTTCTT-SCCCSSBCCCCEEEEEEEEECTTCCS
T ss_pred             CCChheeEEEEecCCCCeEEEEeeCCCCCCCeEEEEEeEEeEchhhHHHhcCC-CCCCCCcccCccccEEEEEECCCCcc
Confidence            45789999999999877999999999999999999999999999999999886 44468999999999999999999999


Q ss_pred             cCCCCEEEeeCCCCCCCChhhhCCCCCCCCCcc----CCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCce
Q 025895           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR----GATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSV  160 (246)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~----~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  160 (246)
                      |++||||++.+..+|++|.+|.+|..+.|.+..    ...+.|.. .+|..++...|.+.+.....|+|+||+++|++.+
T Consensus        83 ~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~G~~-~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~  161 (376)
T 1e3i_A           83 FKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELM-EDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANL  161 (376)
T ss_dssp             CCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSC-TTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGE
T ss_pred             CCCCCEEEECCcCCCCCCccccCCCcccCcCcCcccccccccccc-ccCccccccCCcccccccCCccceeEEEeccccE
Confidence            999999999999999999999999999999754    10001211 1111111111222222233479999999999999


Q ss_pred             EEcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCC
Q 025895          161 AKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVS  240 (246)
Q Consensus       161 ~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~  240 (246)
                      +++|+++++++|+.+++++.|||+++.+..+++++++|||+|+|++|++++|+|+.+|+.+|++++++++|+++++++|+
T Consensus       162 ~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa  241 (376)
T 1e3i_A          162 ARVDDEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGA  241 (376)
T ss_dssp             EECCTTCCHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC
T ss_pred             EECCCCCCHHHhhhhccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC
Confidence            99999999999999999999999988788999999999999999999999999999999789999999999999999999


Q ss_pred             Cc
Q 025895          241 SS  242 (246)
Q Consensus       241 ~~  242 (246)
                      +.
T Consensus       242 ~~  243 (376)
T 1e3i_A          242 TD  243 (376)
T ss_dssp             SE
T ss_pred             cE
Confidence            83

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=100.00  E-value=9.1e-46  Score=328.39  Aligned_cols=236  Identities=67%  Similarity=1.098  Sum_probs=203.0

Q ss_pred             cccceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCcc
Q 025895            6 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEV   85 (246)
Q Consensus         6 ~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~   85 (246)
                      .+++|||+++++++++++++|+|.|+|+++||+|||++++||++|++++.|.++...+|.++|||++|+|+++|+++++|
T Consensus         3 ~p~~mkA~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~V~~~   82 (373)
T 2fzw_A            3 EVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHLGAGIVESVGEGVTKL   82 (373)
T ss_dssp             CCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCTTCCSSBCCCCEEEEEEEEECTTCCSC
T ss_pred             CccceEEEEEecCCCCcEEEEeeCCCCCCCEEEEEEEEEEEchhhHHHhcCCCCCCCCCccccccccEEEEEECCCCCCC
Confidence            46789999999998779999999999999999999999999999999999876655689999999999999999999999


Q ss_pred             CCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCC
Q 025895           86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP  165 (246)
Q Consensus        86 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~  165 (246)
                      ++||||++.+..+|+.|.+|.+|..+.|.+.....+.|.. .+|...+...|.+.+.....|+|+||+++|.+.++++|+
T Consensus        83 ~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~-~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~  161 (373)
T 2fzw_A           83 KAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLM-PDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDP  161 (373)
T ss_dssp             CTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCC-TTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEECCT
T ss_pred             CCCCEEEECCCCCCCCChHHcCcCcccCCCcccccccccc-cCCcccccccccccccccCCccceeEEEEchhheEECCC
Confidence            9999999999999999999999999999975321001111 122111111222233333457999999999999999999


Q ss_pred             CCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       166 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      ++++++|+.+++++.|||+++.+..+++++++|||+|+|++|++++|+|+.+|+.+|++++++++|+++++++|++.
T Consensus       162 ~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~  238 (373)
T 2fzw_A          162 LAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATE  238 (373)
T ss_dssp             TSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSE
T ss_pred             CCCHHHHhhhccHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCce
Confidence            99999999999999999998878889999999999999999999999999999978999999999999999999983

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=100.00  E-value=1.5e-44  Score=317.78  Aligned_cols=221  Identities=27%  Similarity=0.354  Sum_probs=194.3

Q ss_pred             cceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCC
Q 025895            8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP   87 (246)
Q Consensus         8 ~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~   87 (246)
                      ++|||+++.+++++++++|+|.|+|++|||+|||++++||++|++.+.+.++...+|.++|||++|+|+++|+++++|++
T Consensus         3 m~mka~~~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~E~~G~V~~vG~~v~~~~v   82 (348)
T 3two_A            3 VQSKGFAIFSKDEHFKPHDFSRHAVGPRDVLIDILYAGICHSDIHSAYSEWKEGIYPMIPGHEIAGIIKEVGKGVKKFKI   82 (348)
T ss_dssp             EEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHTTSSSCCCSSBCCCCCEEEEEEEECTTCCSCCT
T ss_pred             eEEEEEEEccCCCCCeEEEeeCCCCCCCeEEEEEEEeeecccchhhhcCCCCCCCCCeecCcceeEEEEEECCCCCCCCC
Confidence            78999999999888999999999999999999999999999999999998776788999999999999999999999999


Q ss_pred             CCEEEeeCC-CCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCC
Q 025895           88 GDHVIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (246)
Q Consensus        88 Gd~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~  166 (246)
                      ||||++.+. .+|++|.+|..|+.++|. ...   .|+. .+.        .........|+|+||+++|.+.++++|++
T Consensus        83 GdrV~~~~~~~~Cg~C~~C~~g~~~~c~-~~~---~~~~-~~~--------~~~~~~~~~G~~aey~~v~~~~~~~iP~~  149 (348)
T 3two_A           83 GDVVGVGCFVNSCKACKPCKEHQEQFCT-KVV---FTYD-CLD--------SFHDNEPHMGGYSNNIVVDENYVISVDKN  149 (348)
T ss_dssp             TCEEEECSEEECCSCSHHHHTTCGGGCT-TCE---ESSS-SEE--------GGGTTEECCCSSBSEEEEEGGGCEECCTT
T ss_pred             CCEEEEeCCcCCCCCChhHhCCCcccCc-ccc---cccc-ccc--------ccccCCcCCccccceEEechhhEEECCCC
Confidence            999988654 789999999999999998 322   1111 000        00000122359999999999999999999


Q ss_pred             CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCcc
Q 025895          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSSK  243 (246)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~~  243 (246)
                      +++++|+.+++++.|||+++. ..++++|++|||+|+|++|++++|+|+.+|+ +|++++++++|+++++++|++..
T Consensus       150 ~~~~~aa~l~~~~~ta~~~l~-~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~v  224 (348)
T 3two_A          150 APLEKVAPLLCAGITTYSPLK-FSKVTKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKKQDALSMGVKHF  224 (348)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHH-HTTCCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSTTHHHHHHTTCSEE
T ss_pred             CCHHHhhhhhhhHHHHHHHHH-hcCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHhcCCCee
Confidence            999999999999999999874 5699999999999999999999999999999 99999999999999999999853

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2.7e-44  Score=318.76  Aligned_cols=233  Identities=31%  Similarity=0.573  Sum_probs=196.4

Q ss_pred             ccceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccC
Q 025895            7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQ   86 (246)
Q Consensus         7 ~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~   86 (246)
                      +++|||+++++++++++++|+|.|+|++|||+|||++++||++|++++.+.++ ..+|.++|||++|+|+++|+++++|+
T Consensus         4 ~~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~-~~~P~v~GhE~~G~V~~vG~~v~~~~   82 (371)
T 1f8f_A            4 LKDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYP-VPLPAVLGHEGSGIIEAIGPNVTELQ   82 (371)
T ss_dssp             CEEEEEEEBCSTTCCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC-CCSSBCCCCEEEEEEEEECTTCCSCC
T ss_pred             cccceEEEEcCCCCCeEEEEecCCCCCCCEEEEEEEEeecCchhHHHHcCCCC-CCCCcccCcccceEEEEeCCCCCCCC
Confidence            56899999999987799999999999999999999999999999999988654 35799999999999999999999999


Q ss_pred             CCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccc-cCCcce-eeccCCcceeeeEEeecCceEEcC
Q 025895           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFS-INGKPI-YHFMGTSTFSQYTVVHDVSVAKID  164 (246)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~-~~~~~~-~~~~~~g~~~~~~~~~~~~~~~ip  164 (246)
                      +||||++.+ .+|+.|.+|.+|..+.|.+.......|.. .+|...+. ..|... ......|+|+||+++|.+.++++|
T Consensus        83 ~GdrV~~~~-~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~-~~g~~~~~~~~g~~~~~~~~~~G~~aey~~v~~~~~~~iP  160 (371)
T 1f8f_A           83 VGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGAD-SEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVT  160 (371)
T ss_dssp             TTCEEEECC-CCCSSSHHHHTTCGGGCTTHHHHSSSSSC-SSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEEEEC
T ss_pred             CCCEEEecC-CCCCCChhhhCcCcccccccccccccccc-ccccccccccCCccccccccCCccccCeEEechhheEECC
Confidence            999999999 99999999999999999875421001100 11100000 000000 001234699999999999999999


Q ss_pred             CCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      +++++++|+.+++++.|||+++.+..+++++++|||+|+|++|++++|+|+.+|+.+|++++++++|+++++++|++.
T Consensus       161 ~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~  238 (371)
T 1f8f_A          161 KDVPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATH  238 (371)
T ss_dssp             TTSCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSE
T ss_pred             CCCCHHHHHHhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCE
Confidence            999999999999999999998878889999999999999999999999999999977999999999999999999983

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=100.00  E-value=2e-44  Score=316.02  Aligned_cols=210  Identities=30%  Similarity=0.508  Sum_probs=193.8

Q ss_pred             ceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCCccCC
Q 025895            9 TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQP   87 (246)
Q Consensus         9 ~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~~~~~   87 (246)
                      +|||+++++++++++++|+|.|+|++|||+|||++++||++|++.+.+.++. ..+|.++|||++|+|+++|+++++|++
T Consensus         2 ~MkA~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~v~G~E~~G~V~~vG~~v~~~~v   81 (340)
T 3s2e_A            2 MMKAAVVRAFGAPLTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPFIPGHEGVGYVSAVGSGVSRVKE   81 (340)
T ss_dssp             EEEEEEBCSTTSCCEEEEEECCCCCTTCEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSEEEEEEEEECSSCCSCCT
T ss_pred             ceEEEEEecCCCCCEEEEccCCCCCCCeEEEEEEEeccCHHHHHHHcCCCCCCCCCCcccCCcceEEEEEECCCCCcCCC
Confidence            6999999999888999999999999999999999999999999999998764 468999999999999999999999999


Q ss_pred             CCEEE-eeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCC
Q 025895           88 GDHVI-PCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (246)
Q Consensus        88 Gd~V~-~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~  166 (246)
                      ||||. .++...|+.|.+|..|+.+.|.+...   .|.. .+                  |+|+||+++|.+.++++|++
T Consensus        82 GdrV~~~~~~~~cg~C~~c~~g~~~~c~~~~~---~g~~-~~------------------G~~aey~~v~~~~~~~iP~~  139 (340)
T 3s2e_A           82 GDRVGVPWLYSACGYCEHCLQGWETLCEKQQN---TGYS-VN------------------GGYGEYVVADPNYVGLLPDK  139 (340)
T ss_dssp             TCEEEEESEEECCSSSHHHHTTCGGGCTTCEE---BTTT-BC------------------CSSBSEEEECTTTSEECCTT
T ss_pred             CCEEEecCCCCCCCCChHHhCcCcccCccccc---cCCC-CC------------------CcceeEEEechHHEEECCCC
Confidence            99994 56778999999999999999998654   2322 33                  49999999999999999999


Q ss_pred             CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      +++++|+.+++++.|+|+++ +..+++++++|||+|+|++|++++|+|+.+|+ +|++++++++|+++++++|++.
T Consensus       140 ~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~  213 (340)
T 3s2e_A          140 VGFVEIAPILCAGVTVYKGL-KVTDTRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARRLGAEV  213 (340)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HTTTCCTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSE
T ss_pred             CCHHHhhcccchhHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCCCE
Confidence            99999999999999999987 67799999999999999999999999999999 9999999999999999999984

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2.1e-44  Score=318.29  Aligned_cols=214  Identities=29%  Similarity=0.384  Sum_probs=191.1

Q ss_pred             cccceeeeEeecCCCCeEEEEeecCC-CCCCeEEEEEeeeecchhhhhhhcCCCC---CCCCCcccccceEEEEEEcCCC
Q 025895            6 QVITCKAAVAWEPNKPLVIEDVQVAP-PQAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGEG   81 (246)
Q Consensus         6 ~~~~~ka~~~~~~~~~~~~~e~~~p~-~~~~eVlVkv~~~~i~~~D~~~~~~~~~---~~~~p~v~G~e~vG~V~~vG~~   81 (246)
                      .+.+|||+++++++++++++|+|.|+ |++|||+|||++++||++|++.+.|.++   ...+|.++|||++|+|+++|++
T Consensus        12 ~~~~mka~~~~~~g~~l~~~~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~   91 (359)
T 1h2b_A           12 GVERLKAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEG   91 (359)
T ss_dssp             -----CEEEESSTTSCCEEECCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEECTT
T ss_pred             ChhhceEEEEecCCCCcEEEEccCCCCCCCCEEEEEEEEEEecccchHHHhCCCccccCCCCCeecCcCceEEEEEECCC
Confidence            35789999999998779999999999 9999999999999999999999998764   3467999999999999999999


Q ss_pred             CCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceE
Q 025895           82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVA  161 (246)
Q Consensus        82 ~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  161 (246)
                      +++|++||||+..+..+|+.|.+|..|..++|.+...   .|.. .+                  |+|+||+++|.+.++
T Consensus        92 v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~---~G~~-~~------------------G~~aey~~v~~~~~~  149 (359)
T 1h2b_A           92 VEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEF---PGLN-ID------------------GGFAEFMRTSHRSVI  149 (359)
T ss_dssp             CCSCCTTCEEEECSCBCCSCSHHHHTTCGGGCTTCBC---BTTT-BC------------------CSSBSEEEECGGGEE
T ss_pred             CCCCCCCCEEEeCCCCCCCCChhhhCcCcccCCCccc---cccC-CC------------------CcccceEEechHhEE
Confidence            9999999999988889999999999999999997653   2321 23                  499999999999999


Q ss_pred             EcCCCCCchhhh---hccccchhhhhhhhhh-CCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCChhHHHHHh
Q 025895          162 KIDPQAPLDKVC---LLGCGVPTGLGAVWNT-AKVEPGSIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       162 ~ip~~~~~~~aa---~l~~~~~ta~~~l~~~-~~~~~~~~VlI~Gag~~G~~ai~~a~~~-G~~~vi~~~~~~~~~~~~~  236 (246)
                      ++|+++++++|+   .+.+++.|||+++.+. .+++++++|||+|+|++|++++|+|+.+ |+ +|++++++++|+++++
T Consensus       150 ~iP~~~~~~~aa~~~~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga-~Vi~~~~~~~~~~~~~  228 (359)
T 1h2b_A          150 KLPKDISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPA-TVIALDVKEEKLKLAE  228 (359)
T ss_dssp             ECCTTCCHHHHHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCC-EEEEEESSHHHHHHHH
T ss_pred             ECCCCCCHHHHhhccchhhhHHHHHHHHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCC-eEEEEeCCHHHHHHHH
Confidence            999999999998   7888889999987655 8999999999999999999999999999 99 8999999999999999


Q ss_pred             hcCCCc
Q 025895          237 SCVSSS  242 (246)
Q Consensus       237 ~lg~~~  242 (246)
                      ++|++.
T Consensus       229 ~lGa~~  234 (359)
T 1h2b_A          229 RLGADH  234 (359)
T ss_dssp             HTTCSE
T ss_pred             HhCCCE
Confidence            999983

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=100.00  E-value=1.3e-43  Score=314.60  Aligned_cols=211  Identities=25%  Similarity=0.397  Sum_probs=193.6

Q ss_pred             cccceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCcc
Q 025895            6 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEV   85 (246)
Q Consensus         6 ~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~   85 (246)
                      .+.+|||+++++++. ++++|+|.|+|++|||+|||++++||++|++++.|.++ ..+|.++|||++|+|+++|+++++|
T Consensus        20 ~p~~mkA~v~~~~~~-l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~-~~~p~v~G~e~~G~V~~vG~~v~~~   97 (370)
T 4ej6_A           20 FQSMMKAVRLESVGN-ISVRNVGIPEPGPDDLLVKVEACGICGTDRHLLHGEFP-STPPVTLGHEFCGIVVEAGSAVRDI   97 (370)
T ss_dssp             -CCEEEEEEEEETTE-EEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTSSC-CCSSEECCCSEEEEEEEECTTCCSS
T ss_pred             cchheEEEEEecCCc-eEEEEccCCCCCCCeEEEEEEEEeecHHHHHHHcCCCC-CCCCeecCcceEEEEEEECCCCCCC
Confidence            468899999999976 99999999999999999999999999999999998763 4679999999999999999999999


Q ss_pred             CCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCC
Q 025895           86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP  165 (246)
Q Consensus        86 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~  165 (246)
                      ++||||++.+...|+.|.+|..|..+.|.+...   .|.. .+                  |+|+||+++|.+.++++|+
T Consensus        98 ~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~-~~------------------G~~aey~~v~~~~~~~~P~  155 (370)
T 4ej6_A           98 APGARITGDPNISCGRCPQCQAGRVNLCRNLRA---IGIH-RD------------------GGFAEYVLVPRKQAFEIPL  155 (370)
T ss_dssp             CTTCEEEECCEECCSSSHHHHTTCGGGCTTCEE---BTTT-BC------------------CSSBSEEEEEGGGEEEECT
T ss_pred             CCCCEEEECCCCCCCCChHHhCcCcccCCCccc---cCCC-CC------------------CcceEEEEEchhhEEECCC
Confidence            999999999999999999999999999998664   2322 33                  4999999999999999999


Q ss_pred             CCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       166 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      ++++++|+ +..++.++|+++ +..+++++++|||+|+|++|++++|+|+++|+.+|++++++++|+++++++|++.
T Consensus       156 ~~~~~~aa-l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~  230 (370)
T 4ej6_A          156 TLDPVHGA-FCEPLACCLHGV-DLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATA  230 (370)
T ss_dssp             TSCTTGGG-GHHHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSE
T ss_pred             CCCHHHHh-hhhHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCE
Confidence            99999998 556899999987 7889999999999999999999999999999988999999999999999999984

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=100.00  E-value=3.2e-43  Score=310.75  Aligned_cols=216  Identities=22%  Similarity=0.283  Sum_probs=191.9

Q ss_pred             cccceeeeEeecCCCCeEEEE--eecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCC
Q 025895            6 QVITCKAAVAWEPNKPLVIED--VQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVT   83 (246)
Q Consensus         6 ~~~~~ka~~~~~~~~~~~~~e--~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~   83 (246)
                      ++.+|||+++++++++++++|  +|.|+|++|||+|||++++||++|++.+.|.++...+|.++|||++|+|+++|++++
T Consensus         3 ~p~~mka~~~~~~~~~l~~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~GhE~~G~V~~vG~~v~   82 (360)
T 1piw_A            3 YPEKFEGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPLVVGHEIVGKVVKLGPKSN   82 (360)
T ss_dssp             TTTCEEEEEECCSSSTTSCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTSCCCSSEECCCCEEEEEEEECTTCC
T ss_pred             CChheEEEEEecCCCCeeEEeccccCCCCCCCeEEEEEEEeccchhhHHHhcCCCCCCCCCcccCcCceEEEEEeCCCCC
Confidence            356899999999986799999  999999999999999999999999999998765556899999999999999999999


Q ss_pred             -ccCCCCEEEeeC-CCCCCCChhhhCCCCCCCCCc-cCCCC---CceecCCCccccccCCcceeeccCCcceeeeEEeec
Q 025895           84 -EVQPGDHVIPCY-QAECRECKFCKSGKTNLCGKV-RGATG---AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD  157 (246)
Q Consensus        84 -~~~~Gd~V~~~~-~~~~~~c~~c~~~~~~~c~~~-~~~~~---~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~  157 (246)
                       +|++||||++.+ ...|+.|.+|..|+.++|.+. .....   .|.                   ...|+|+||+++|.
T Consensus        83 ~~~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~-------------------~~~G~~aey~~v~~  143 (360)
T 1piw_A           83 SGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGY-------------------VSQGGYANYVRVHE  143 (360)
T ss_dssp             SSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBCTTSC-------------------BCCCSSBSEEEEEG
T ss_pred             CCCCCCCEEEEecCCCCCCCChhhcCCCcccCcchhhccccccCCCc-------------------cCCCcceeEEEEch
Confidence             999999996654 468999999999999999875 11000   021                   12349999999999


Q ss_pred             CceEEcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          158 VSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       158 ~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      +.++++|+++++++|+.+++++.|||+++.+ .+++++++|||+|+|++|++++|+|+.+|+ +|++++++++|++++++
T Consensus       144 ~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga-~Vi~~~~~~~~~~~~~~  221 (360)
T 1piw_A          144 HFVVPIPENIPSHLAAPLLCGGLTVYSPLVR-NGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMK  221 (360)
T ss_dssp             GGEEECCTTSCHHHHGGGGTHHHHHHHHHHH-TTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHH
T ss_pred             hheEECCCCCCHHHhhhhhhhHHHHHHHHHH-cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHH
Confidence            9999999999999999999999999998755 889999999999999999999999999999 89999999999999999


Q ss_pred             cCCCc
Q 025895          238 CVSSS  242 (246)
Q Consensus       238 lg~~~  242 (246)
                      +|++.
T Consensus       222 lGa~~  226 (360)
T 1piw_A          222 MGADH  226 (360)
T ss_dssp             HTCSE
T ss_pred             cCCCE
Confidence            99983

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=100.00  E-value=2.8e-43  Score=309.74  Aligned_cols=211  Identities=27%  Similarity=0.370  Sum_probs=178.4

Q ss_pred             ccceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcC-CCC--CCCCCcccccceEEEEEEcCCCCC
Q 025895            7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSG-KDP--EGLFPCILGHEAAGIVESVGEGVT   83 (246)
Q Consensus         7 ~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~-~~~--~~~~p~v~G~e~vG~V~~vG~~~~   83 (246)
                      |++|||++++++++.++++|+|.|+|++|||+|||.+++||++|++.+.| .++  ...+|.++|||++|+|+++|++++
T Consensus         2 m~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~   81 (348)
T 2d8a_A            2 SEKMVAIMKTKPGYGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEIGPGVE   81 (348)
T ss_dssp             -CEEEEEEECSSSSSCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCTTHHHHCCSSEECCCEEEEEEEEECTTCC
T ss_pred             CCcceEEEEECCCCCEEEEECCCCCCCcCEEEEEEeEEEecHHHHHHHcCCCCCcccCCCCCccCccceEEEEEECCCCC
Confidence            56799999999985599999999999999999999999999999999988 432  236789999999999999999999


Q ss_pred             ccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEc
Q 025895           84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI  163 (246)
Q Consensus        84 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i  163 (246)
                      +|++||||++.+..+|+.|.+|.+|+.++|.+...   .|.. .+                  |+|+||+++|.+.++++
T Consensus        82 ~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~-~~------------------G~~aey~~v~~~~~~~i  139 (348)
T 2d8a_A           82 GIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKI---FGVD-TD------------------GVFAEYAVVPAQNIWKN  139 (348)
T ss_dssp             SCCTTCEEEECCEECCSCCC------------CEE---TTTS-SC------------------CSSBSEEEEEGGGEEEC
T ss_pred             cCCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCe---ecCC-CC------------------CcCcceEEeChHHeEEC
Confidence            99999999999999999999999999999997653   2222 23                  49999999999999999


Q ss_pred             CCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       164 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      |+++++++|+.+. ++.|||+++ +..++ ++++|||+|+|++|++++|+|+.+|+.+|++++++++|+++++++|++.
T Consensus       140 P~~~~~~~aa~~~-~~~ta~~~l-~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~  215 (348)
T 2d8a_A          140 PKSIPPEYATLQE-PLGNAVDTV-LAGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADY  215 (348)
T ss_dssp             CTTSCHHHHTTHH-HHHHHHHHH-TTSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSE
T ss_pred             CCCCCHHHHHhhh-HHHHHHHHH-HhcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCE
Confidence            9999999999875 788999987 67888 9999999999999999999999999878999999999999999999983

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=100.00  E-value=1.3e-42  Score=304.76  Aligned_cols=208  Identities=27%  Similarity=0.432  Sum_probs=187.7

Q ss_pred             eeeeEeecCCCCeEEEEeecCC-CCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCC
Q 025895           10 CKAAVAWEPNKPLVIEDVQVAP-PQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (246)
Q Consensus        10 ~ka~~~~~~~~~~~~~e~~~p~-~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~G   88 (246)
                      |||++++++|. ++++|+|.|+ ++||||||||.+++||++|++.+.+..+. .+|.++|||++|+|+++|++++++++|
T Consensus         1 MkAvv~~~~g~-l~v~e~p~P~~~~~~eVlVkv~a~gi~~sD~~~~~g~~~~-~~P~i~G~E~~G~V~~vG~~V~~~~~G   78 (346)
T 4a2c_A            1 MKSVVNDTDGI-VRVAESVIPEIKHQDEVRVKIASSGLCGSDLPRIFKNGAH-YYPITLGHEFSGYIDAVGSGVDDLHPG   78 (346)
T ss_dssp             CEEEEECSSSC-EEEEECCCCCCCSTTEEEEEEEEEECCTTHHHHHHSSCSS-SSSBCCCCEEEEEEEEECTTCCSCCTT
T ss_pred             CCEEEEecCCC-EEEEEEeCCCCCCcCEEEEEEEEEEECHHHHHHHcCCCCC-CCCccccEEEEEEEEEECCCcccccCC
Confidence            89999999998 9999999998 57999999999999999999999887544 689999999999999999999999999


Q ss_pred             CEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCC
Q 025895           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP  168 (246)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~  168 (246)
                      |+|.+.+...|+.|.+|..|..+.|.+...   .|.. .+|                  +|+||+++|.+.++++|++++
T Consensus        79 drV~~~~~~~~g~c~~c~~g~~~~c~~~~~---~g~~-~~G------------------~~aey~~v~~~~~~~iP~~l~  136 (346)
T 4a2c_A           79 DAVACVPLLPCFTCPECLKGFYSQCAKYDF---IGSR-RDG------------------GFAEYIVVKRKNVFALPTDMP  136 (346)
T ss_dssp             CEEEECCEECCSCSHHHHTTCGGGCSSCEE---BTTT-BCC------------------SSBSEEEEEGGGEEECCTTSC
T ss_pred             CeEEeeeccCCCCcccccCCccccCCCccc---ccCC-CCc------------------ccccccccchheEEECCCCCC
Confidence            999999999999999999999999998764   2322 334                  999999999999999999999


Q ss_pred             chhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCcc
Q 025895          169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSSK  243 (246)
Q Consensus       169 ~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~~  243 (246)
                      +++|+.+. .+.++++ +....+++++++|||+|+|++|++++|+|+++|+..+++++++++|+++++++|++..
T Consensus       137 ~~~aa~l~-~~~~~~~-~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~~  209 (346)
T 4a2c_A          137 IEDGAFIE-PITVGLH-AFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQT  209 (346)
T ss_dssp             GGGGGGHH-HHHHHHH-HHHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEE
T ss_pred             HHHHHhch-HHHHHHH-HHHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeEE
Confidence            99999875 3444454 5688899999999999999999999999999999788999999999999999999843

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=100.00  E-value=4.6e-43  Score=309.35  Aligned_cols=212  Identities=25%  Similarity=0.366  Sum_probs=189.7

Q ss_pred             ccceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCC-C--CCCCCcccccceEEEEEEcCCCCC
Q 025895            7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD-P--EGLFPCILGHEAAGIVESVGEGVT   83 (246)
Q Consensus         7 ~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~-~--~~~~p~v~G~e~vG~V~~vG~~~~   83 (246)
                      +++|||+++++++. ++++|+|.|+|++|||+|||.+++||++|++++.+.. .  ...+|.++|||++|+|+++|++++
T Consensus         5 ~~~mka~~~~~~~~-l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~V~   83 (356)
T 1pl8_A            5 KPNNLSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVK   83 (356)
T ss_dssp             CCCCEEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTCC
T ss_pred             ccCceEEEEecCCc-EEEEEccCCCCCCCeEEEEEEEeeeCHHHHHHHcCCCCCCccCCCCcccccceEEEEEEECCCCC
Confidence            57899999999876 9999999999999999999999999999999887432 1  125789999999999999999999


Q ss_pred             ccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEc
Q 025895           84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI  163 (246)
Q Consensus        84 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i  163 (246)
                      +|++||||++.+..+|+.|.+|..|+.+.|.+...   .|....+                  |+|+||+++|.+.++++
T Consensus        84 ~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~~------------------G~~aey~~v~~~~~~~i  142 (356)
T 1pl8_A           84 HLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFF---CATPPDD------------------GNLCRFYKHNAAFCYKL  142 (356)
T ss_dssp             SCCTTCEEEECSEECSSCCHHHHTTCGGGCTTCEE---TTBTTBC------------------CSCBSEEEEEGGGEEEC
T ss_pred             CCCCCCEEEEeccCCCCCChHHHCcCcccCCCccc---cCcCCCC------------------CccccEEEeehHHEEEC
Confidence            99999999999999999999999999999997653   2221123                  49999999999999999


Q ss_pred             CCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       164 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      |+++++++|+.+ .++.|+|+++ +..+++++++|||+|+|++|++++|+|+.+|+.+|++++++++|+++++++|++.
T Consensus       143 P~~l~~~~aa~~-~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~  219 (356)
T 1pl8_A          143 PDNVTFEEGALI-EPLSVGIHAC-RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADL  219 (356)
T ss_dssp             CTTSCHHHHHHH-HHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSE
T ss_pred             cCCCCHHHHHhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCE
Confidence            999999999876 4788999987 7789999999999999999999999999999988999999999999999999983

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=100.00  E-value=1.3e-42  Score=305.15  Aligned_cols=210  Identities=30%  Similarity=0.454  Sum_probs=185.7

Q ss_pred             ccceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCC--CCCCCcccccceEEEEEEcCCCCCc
Q 025895            7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP--EGLFPCILGHEAAGIVESVGEGVTE   84 (246)
Q Consensus         7 ~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~--~~~~p~v~G~e~vG~V~~vG~~~~~   84 (246)
                      |.+|||+++++++++++++|+|.|+|++|||+|||++++||++|++.+.|.++  ...+|.++|||++|+|+++|++ ++
T Consensus         1 m~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~E~~G~V~~vG~~-~~   79 (344)
T 2h6e_A            1 MVKSKAALLKKFSEPLSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPIILGHENAGTIVEVGEL-AK   79 (344)
T ss_dssp             CEEEEBCEECSCCC-----EEEECCCCTTCEEEEEEEEECCHHHHHHHTTSCCCTTCCSSEECCCCEEEEEEEECTT-CC
T ss_pred             CceeEEEEEecCCCCCeEEEeeCCCCCCCEEEEEEEEEEechhhHHHHcCCCcccCCCCCccccccceEEEEEECCC-CC
Confidence            35799999999986799999999999999999999999999999999988765  3468999999999999999999 99


Q ss_pred             cCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEee-cCceEEc
Q 025895           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH-DVSVAKI  163 (246)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~i  163 (246)
                      |++||||+..+..+|+.|.+|..+..++|.+...   .|.. .+                  |+|+||+++| ++.++++
T Consensus        80 ~~~GdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~---~G~~-~~------------------G~~aey~~v~~~~~~~~i  137 (344)
T 2h6e_A           80 VKKGDNVVVYATWGDLTCRYCREGKFNICKNQII---PGQT-TN------------------GGFSEYMLVKSSRWLVKL  137 (344)
T ss_dssp             CCTTCEEEECSCBCCSCSTTGGGTCGGGCTTCBC---BTTT-BC------------------CSSBSEEEESCGGGEEEE
T ss_pred             CCCCCEEEECCCCCCCCChhhhCCCcccCCCccc---cccc-cC------------------CcceeeEEecCcccEEEe
Confidence            9999999888888999999999999999997643   2321 23                  4999999999 9999999


Q ss_pred             CCCCCchhhhhccccchhhhhhhhhh----CCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCChhHHHHHhh
Q 025895          164 DPQAPLDKVCLLGCGVPTGLGAVWNT----AKVEPGSIVAVFGLGTVGLAVAEGAKAA--GASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       164 p~~~~~~~aa~l~~~~~ta~~~l~~~----~~~~~~~~VlI~Gag~~G~~ai~~a~~~--G~~~vi~~~~~~~~~~~~~~  237 (246)
                       +++++++|+.+++++.|||+++...    .++ ++++|||+|+|++|++++|+|+.+  |+ +|++++++++|++++++
T Consensus       138 -~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga-~Vi~~~~~~~~~~~~~~  214 (344)
T 2h6e_A          138 -NSLSPVEAAPLADAGTTSMGAIRQALPFISKF-AEPVVIVNGIGGLAVYTIQILKALMKNI-TIVGISRSKKHRDFALE  214 (344)
T ss_dssp             -SSSCHHHHGGGGTHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSHHHHHHHHHHHHHCTTC-EEEEECSCHHHHHHHHH
T ss_pred             -CCCCHHHhhhhhhhhHHHHHHHHhhhhcccCC-CCCEEEEECCCHHHHHHHHHHHHhcCCC-EEEEEeCCHHHHHHHHH
Confidence             9999999999999999999987654    278 999999999999999999999999  99 89999999999999999


Q ss_pred             cCCCc
Q 025895          238 CVSSS  242 (246)
Q Consensus       238 lg~~~  242 (246)
                      +|++.
T Consensus       215 lGa~~  219 (344)
T 2h6e_A          215 LGADY  219 (344)
T ss_dssp             HTCSE
T ss_pred             hCCCE
Confidence            99984

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=100.00  E-value=2e-42  Score=303.86  Aligned_cols=213  Identities=26%  Similarity=0.396  Sum_probs=190.2

Q ss_pred             eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC--CCCCcccccceEEEEEEcCCCCCccCC
Q 025895           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE--GLFPCILGHEAAGIVESVGEGVTEVQP   87 (246)
Q Consensus        10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~--~~~p~v~G~e~vG~V~~vG~~~~~~~~   87 (246)
                      |||+++++++++++++|+|.|+|++|||+|||++++||++|++.+.+.++.  ..+|.++|||++|+|+++|+++++|++
T Consensus         1 MkA~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~v   80 (345)
T 3jv7_A            1 MKAVQYTEIGSEPVVVDIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLGHEGVGTVAELGEGVTGFGV   80 (345)
T ss_dssp             CEEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTTCCSCSSEECCSEEEEEEEEECTTCCSCCT
T ss_pred             CeEEEEcCCCCceEEEEecCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCCccCCCCCcccCcccEEEEEEECCCCCCCCC
Confidence            899999999998999999999999999999999999999999999887542  468999999999999999999999999


Q ss_pred             CCEEEeeCCCCCCCChhhhCCCCCCCCCccCCC--CCceecCCCccccccCCcceeeccCCcceeeeEEee-cCceEEcC
Q 025895           88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT--GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH-DVSVAKID  164 (246)
Q Consensus        88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~--~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~ip  164 (246)
                      ||||++.+...|+.|.+|..+..+.|......+  ..|.                   ...|+|+||+++| .+.++++|
T Consensus        81 GdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~~~g~-------------------~~~G~~aey~~v~~~~~~~~~p  141 (345)
T 3jv7_A           81 GDAVAVYGPWGCGACHACARGRENYCTRAADLGITPPGL-------------------GSPGSMAEYMIVDSARHLVPIG  141 (345)
T ss_dssp             TCEEEECCSCCCSSSHHHHTTCGGGCSSHHHHTCCCBTT-------------------TBCCSSBSEEEESCGGGEEECT
T ss_pred             CCEEEEecCCCCCCChHHHCcCcCcCccccccccccCCc-------------------CCCceeeEEEEecchhceEeCC
Confidence            999999999999999999999999994322100  0111                   1234999999999 99999999


Q ss_pred             CCCCchhhhhccccchhhhhhhhh-hCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          165 PQAPLDKVCLLGCGVPTGLGAVWN-TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~l~~-~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      + +++++|+.+++++.|||+++.+ ...++++++|||+|+|++|++++|+|+.+|..+|++++++++|+++++++|++.
T Consensus       142 ~-~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~  219 (345)
T 3jv7_A          142 D-LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADA  219 (345)
T ss_dssp             T-CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSE
T ss_pred             C-CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCE
Confidence            9 9999999999999999998866 458999999999999999999999999995449999999999999999999984

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=100.00  E-value=6.9e-43  Score=308.81  Aligned_cols=214  Identities=25%  Similarity=0.328  Sum_probs=189.1

Q ss_pred             CCCCCcccceeeeEeecCCCCeEEEEeecC--------CCCCCeEEEEEeeeecchhhhhhhcCCC---CCCCCCccccc
Q 025895            1 MSTEGQVITCKAAVAWEPNKPLVIEDVQVA--------PPQAGEVRIKILFTALCHTDAYTWSGKD---PEGLFPCILGH   69 (246)
Q Consensus         1 m~~~~~~~~~ka~~~~~~~~~~~~~e~~~p--------~~~~~eVlVkv~~~~i~~~D~~~~~~~~---~~~~~p~v~G~   69 (246)
                      |++ +++++|||+++.+++. ++++|+|.|        +|++|||+|||++++||++|++++.+..   ....+|.++||
T Consensus         1 m~~-~~~~~mka~~~~~~~~-l~~~~~~~P~~~~~~~~~~~~~eVlVkv~a~gi~~~D~~~~~~~~~~~~~~~~p~v~G~   78 (363)
T 3m6i_A            1 MAS-SASKTNIGVFTNPQHD-LWISEASPSLESVQKGEELKEGEVTVAVRSTGICGSDVHFWKHGCIGPMIVECDHVLGH   78 (363)
T ss_dssp             -----CCSCCEEEEECTTCC-EEEEECSSCHHHHHHTCSCCTTEEEEEEEEEECCHHHHHHHHHSBSSSCBCCSCEECCC
T ss_pred             CCC-CCcccceeEEEeCCCc-EEEEEecCCccccccCCCcCCCeEEEEEeEEeecHhhHHHHcCCCCCCccCCCCcccCc
Confidence            444 4568999999998887 999999999        9999999999999999999999887432   12367999999


Q ss_pred             ceEEEEEEcCCCCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcce
Q 025895           70 EAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTF  149 (246)
Q Consensus        70 e~vG~V~~vG~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~  149 (246)
                      |++|+|+++|+++++|++||||++.+..+|+.|.+|..|..+.|.+...   .|....+                  |+|
T Consensus        79 E~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~---~g~~~~~------------------G~~  137 (363)
T 3m6i_A           79 ESAGEVIAVHPSVKSIKVGDRVAIEPQVICNACEPCLTGRYNGCERVDF---LSTPPVP------------------GLL  137 (363)
T ss_dssp             EEEEEEEEECTTCCSCCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEE---TTSTTSC------------------CSC
T ss_pred             ceEEEEEEECCCCCCCCCCCEEEEecccCCCCCHHHHCcCcccCCCccc---cCCCCCC------------------ccc
Confidence            9999999999999999999999999999999999999999999998764   2222133                  499


Q ss_pred             eeeEEeecCceEEcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          150 SQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       150 ~~~~~~~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      +||+++|.+.++++|+ +++++|+.+. ++.|||+++ +..++++|++|||+|+|++|++++|+||.+|+++|+++++++
T Consensus       138 aey~~v~~~~~~~iP~-~s~~~aa~~~-~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~  214 (363)
T 3m6i_A          138 RRYVNHPAVWCHKIGN-MSYENGAMLE-PLSVALAGL-QRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDE  214 (363)
T ss_dssp             BSEEEEEGGGEEECTT-CCHHHHHHHH-HHHHHHHHH-HHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCH
T ss_pred             eeEEEEehhhEEECCC-CCHHHHHhhh-HHHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            9999999999999999 9999999874 788999987 788999999999999999999999999999996699999999


Q ss_pred             hHHHHHhhcCCC
Q 025895          230 KKFDRGMSCVSS  241 (246)
Q Consensus       230 ~~~~~~~~lg~~  241 (246)
                      +|+++++++ ++
T Consensus       215 ~~~~~a~~l-~~  225 (363)
T 3m6i_A          215 GRLKFAKEI-CP  225 (363)
T ss_dssp             HHHHHHHHH-CT
T ss_pred             HHHHHHHHh-ch
Confidence            999999999 54

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=7.5e-43  Score=307.46  Aligned_cols=210  Identities=29%  Similarity=0.476  Sum_probs=187.5

Q ss_pred             cceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcC-CCC--CCCCCcccccceEEEEEEcCCCCCc
Q 025895            8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSG-KDP--EGLFPCILGHEAAGIVESVGEGVTE   84 (246)
Q Consensus         8 ~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~-~~~--~~~~p~v~G~e~vG~V~~vG~~~~~   84 (246)
                      ++|||+++++++. ++++|+|.|+|++|||+|||++++||++|++.+.+ .+.  ...+|.++|||++|+|+++|+++++
T Consensus         3 ~~mka~~~~~~~~-l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~   81 (352)
T 1e3j_A            3 SDNLSAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKH   81 (352)
T ss_dssp             -CCEEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCCS
T ss_pred             ccCEEEEEEcCCc-EEEEEecCCCCCCCeEEEEEEEEEEChhhHHHHcCCCCccccCCCCccccccceEEEEEeCCCCCC
Confidence            5799999999876 99999999999999999999999999999998873 322  1357899999999999999999999


Q ss_pred             cCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcC
Q 025895           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (246)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip  164 (246)
                      |++||||++.+..+|+.|.+|..|..+.|.+...   .|....+                  |+|+||+++|.+.++++|
T Consensus        82 ~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~~------------------G~~aey~~v~~~~~~~iP  140 (352)
T 1e3j_A           82 LKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTF---CATPPDD------------------GNLARYYVHAADFCHKLP  140 (352)
T ss_dssp             CCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEE---TTBTTBC------------------CSCBSEEEEEGGGEEECC
T ss_pred             CCCCCEEEEcCcCCCCCChhhhCcCcccCCCCcc---cCcCCCC------------------ccceeEEEeChHHeEECc
Confidence            9999999999999999999999999999998653   2221123                  499999999999999999


Q ss_pred             CCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      +++++++|+.+ .++.|||+++ +..+++++++|||+|+|++|++++|+|+.+|+ +|++++++++|+++++++|++.
T Consensus       141 ~~~~~~~aa~~-~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~  215 (352)
T 1e3j_A          141 DNVSLEEGALL-EPLSVGVHAC-RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGADV  215 (352)
T ss_dssp             TTSCHHHHHTH-HHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSE
T ss_pred             CCCCHHHHHhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhCCCE
Confidence            99999999876 4788999987 77899999999999999999999999999999 6999999999999999999983

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=100.00  E-value=1.5e-42  Score=305.56  Aligned_cols=211  Identities=23%  Similarity=0.333  Sum_probs=190.0

Q ss_pred             eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhh-hhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCC
Q 025895           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAY-TWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (246)
Q Consensus        10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~-~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~G   88 (246)
                      |||++++++++ ++++|+|.|+|++|||+|||++++||++|++ ++.|.++. .+|.++|||++|+|+++|+++++|++|
T Consensus         1 MkA~~~~~~~~-~~~~e~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~~-~~p~v~G~E~~G~V~~vG~~v~~~~vG   78 (352)
T 3fpc_A            1 MKGFAMLSIGK-VGWIEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIGE-RHNMILGHEAVGEVVEVGSEVKDFKPG   78 (352)
T ss_dssp             CEEEEEEETTE-EEEEECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTCC-CSSEECCCEEEEEEEEECTTCCSCCTT
T ss_pred             CeEEEEccCCC-ceEEeCCCCCCCCCeEEEEeCEEeEcccchHHHhCCCCCC-CCCcccCCcceEEEEEECCCCCcCCCC
Confidence            89999999998 9999999999999999999999999999999 55776543 679999999999999999999999999


Q ss_pred             CEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecC--ceEEcCCC
Q 025895           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQ  166 (246)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~ip~~  166 (246)
                      |||++.+..+|+.|.+|..++.+.|.........|.                   ...|+|+||+.+|..  .++++|++
T Consensus        79 drV~~~~~~~c~~c~~c~~g~~~~~~~~~~~~~~~~-------------------~~~G~~aey~~v~~~~~~~~~iP~~  139 (352)
T 3fpc_A           79 DRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSN-------------------VKDGVFGEFFHVNDADMNLAHLPKE  139 (352)
T ss_dssp             CEEEECSBCCCSSSHHHHTTCGGGTTSTTTTBCBTT-------------------TBCCSSBSCEEESSHHHHCEECCTT
T ss_pred             CEEEEccccCCCCchhhcCCCcCCcccccccccccc-------------------CCCCcccceEEeccccCeEEECCCC
Confidence            999999999999999999999998876432111111                   123499999999975  89999999


Q ss_pred             CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      +++++|+.++.++.|||+++ +..+++++++|||+|+|++|++++|+|+.+|+.+|++++++++|+++++++|++.
T Consensus       140 ~~~~~aa~~~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~  214 (352)
T 3fpc_A          140 IPLEAAVMIPDMMTTGFHGA-ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATD  214 (352)
T ss_dssp             SCHHHHTTTTTHHHHHHHHH-HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCE
T ss_pred             CCHHHHhhccchhHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCce
Confidence            99999999988999999986 7899999999999999999999999999999978999999999999999999983

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=100.00  E-value=4.5e-42  Score=301.12  Aligned_cols=209  Identities=32%  Similarity=0.504  Sum_probs=189.2

Q ss_pred             eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCCccCCC
Q 025895           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQPG   88 (246)
Q Consensus        10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~~~~~G   88 (246)
                      |||+++++++++++++|+|.|+|++|||+|||++++||++|++.+.|.++. ..+|.++|||++|+|+++|+++++|++|
T Consensus         1 Mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~GhE~~G~V~~vG~~v~~~~vG   80 (339)
T 1rjw_A            1 MKAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVG   80 (339)
T ss_dssp             CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCSCCTT
T ss_pred             CeEEEEcCCCCCcEEEEeeCCCCCCCEEEEEEEEEeEchhhHHHhcCCCCcCCCCCeeccccceEEEEEECCCCCcCCCC
Confidence            799999999866999999999999999999999999999999999887652 3679999999999999999999999999


Q ss_pred             CEEEeeCC-CCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCC
Q 025895           89 DHVIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA  167 (246)
Q Consensus        89 d~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~  167 (246)
                      |||++.+. ..|+.|.+|..|..++|.+...   .|.. .+|                  +|+||+.+|.+.++++|+++
T Consensus        81 drV~~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~-~~G------------------~~aey~~v~~~~~~~~P~~~  138 (339)
T 1rjw_A           81 DRVGIPWLYSACGHCDYCLSGQETLCEHQKN---AGYS-VDG------------------GYAEYCRAAADYVVKIPDNL  138 (339)
T ss_dssp             CEEEECSEEECCSCSHHHHTTCGGGCTTCEE---BTTT-BCC------------------SSBSEEEEEGGGCEECCTTS
T ss_pred             CEEEEecCCCCCCCCchhhCcCcccCCCcce---eecC-CCC------------------cceeeEEechHHEEECCCCC
Confidence            99998764 3599999999999999997653   2221 234                  99999999999999999999


Q ss_pred             CchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      ++++|+.+++++.|||+++.. .+++++++|||+|+|++|++++|+|+.+|+ +|++++++++|+++++++|++.
T Consensus       139 ~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~  211 (339)
T 1rjw_A          139 SFEEAAPIFCAGVTTYKALKV-TGAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADL  211 (339)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHH-HTCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSE
T ss_pred             CHHHhhhhhhhHHHHHHHHHh-cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHCCCCE
Confidence            999999999999999998755 489999999999998899999999999999 9999999999999999999973

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=5.9e-42  Score=303.78  Aligned_cols=220  Identities=27%  Similarity=0.425  Sum_probs=190.1

Q ss_pred             ccceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccC
Q 025895            7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQ   86 (246)
Q Consensus         7 ~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~   86 (246)
                      .++||++++.+++++++++|+|.|+|++|||+|||++++||++|++++.+.++...+|.++|||++|+|+++|+++++|+
T Consensus        20 ~~~~~a~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~V~~~~   99 (369)
T 1uuf_A           20 GLKIKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHEIVGRVVAVGDQVEKYA   99 (369)
T ss_dssp             ---CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTSCCCSSBCCCCCEEEEEEEECTTCCSCC
T ss_pred             CceEEEEEEcCCCCCcEEEEecCCCCCCCeEEEEEEEEeecHHHHHHhcCCCCCCCCCeecccCceEEEEEECCCCCCCC
Confidence            58899999998877799999999999999999999999999999999988765556799999999999999999999999


Q ss_pred             CCCEEEeeCC-CCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCC
Q 025895           87 PGDHVIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP  165 (246)
Q Consensus        87 ~Gd~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~  165 (246)
                      +||||++.+. ..|+.|.+|.+|..+.|.+.... ..+.....|             ....|+|+||+++|.+.++++|+
T Consensus       100 vGDrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~-~~~~~~~~g-------------~~~~G~~aeyv~v~~~~~~~~P~  165 (369)
T 1uuf_A          100 PGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGT-YNSPTPDEP-------------GHTLGGYSQQIVVHERYVLRIRH  165 (369)
T ss_dssp             TTCEEEECSEEECCSSSHHHHTTCGGGCTTCEET-TTSBCSSTT-------------SBCCCSSBSEEEEEGGGCEECCS
T ss_pred             CCCEEEEccCCCCCCCCcccCCCCcccCcchhcc-cccccccCC-------------CCCCCcccceEEEcchhEEECCC
Confidence            9999998875 46999999999999999975210 000000000             11234999999999999999999


Q ss_pred             C-CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          166 Q-APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       166 ~-~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      + +++++|+.+++++.|||+++.+ .+++++++|||+|+|++|++++|+|+.+|+ +|++++++++|+++++++|++.
T Consensus       166 ~~ls~~~aa~l~~~~~tA~~al~~-~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~Vi~~~~~~~~~~~a~~lGa~~  241 (369)
T 1uuf_A          166 PQEQLAAVAPLLCAGITTYSPLRH-WQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKALGADE  241 (369)
T ss_dssp             CGGGHHHHGGGGTHHHHHHHHHHH-TTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTCSE
T ss_pred             CCCCHHHhhhhhhhHHHHHHHHHh-cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCcE
Confidence            9 9999999999999999998755 689999999999999999999999999999 7999999999999999999984

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=100.00  E-value=9.9e-42  Score=300.97  Aligned_cols=221  Identities=24%  Similarity=0.285  Sum_probs=191.6

Q ss_pred             CcccceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCc
Q 025895            5 GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTE   84 (246)
Q Consensus         5 ~~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~   84 (246)
                      ..+++|+++++++++++++++|+|.|+|++|||+|||++++||++|++.+.+.++...+|.++|||++|+|+++|+++++
T Consensus         5 ~~~m~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~v~~   84 (357)
T 2cf5_A            5 EAERKTTGWAARDPSGILSPYTYTLRETGPEDVNIRIICCGICHTDLHQTKNDLGMSNYPMVPGHEVVGEVVEVGSDVSK   84 (357)
T ss_dssp             -CCCEEEEEEECSTTCCEEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHTCTTTCCCSSBCCCCEEEEEEEEECSSCCS
T ss_pred             cCcceeEEEEEccCCCCcEEEEecCCCCCCCEEEEEEEEEeecchhhhhhcCCCCCCCCCeecCcceeEEEEEECCCCCC
Confidence            45788999999988777999999999999999999999999999999999887654568999999999999999999999


Q ss_pred             cCCCCEEEeeCC-CCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEc
Q 025895           85 VQPGDHVIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI  163 (246)
Q Consensus        85 ~~~Gd~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i  163 (246)
                      |++||||++.+. .+|+.|.+|..+..+.|.+.... ..+.. ..|             ....|+|+||+++|.+.++++
T Consensus        85 ~~vGdrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~-~~~~~-~~g-------------~~~~G~~aey~~v~~~~~~~~  149 (357)
T 2cf5_A           85 FTVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWS-YNDVY-ING-------------QPTQGGFAKATVVHQKFVVKI  149 (357)
T ss_dssp             CCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEET-TTSBC-TTS-------------CBCCCSSBSCEEEEGGGEEEC
T ss_pred             CCCCCEEEEcCCCCCCCCChHHhCcCcccCCCcccc-ccccc-cCC-------------CCCCCccccEEEechhhEEEC
Confidence            999999987654 58999999999999999754321 01100 001             123459999999999999999


Q ss_pred             CCCCCchhhhhccccchhhhhhhhhhCCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh-hcCCC
Q 025895          164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVE-PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM-SCVSS  241 (246)
Q Consensus       164 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~-~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~-~lg~~  241 (246)
                      |+++++++|+.+++++.|||+++. ..+++ ++++|||+|+|++|++++|+|+.+|+ +|++++++++|+++++ ++|++
T Consensus       150 P~~ls~~~aa~l~~~~~ta~~~l~-~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~~~~~~~~~~~~~lGa~  227 (357)
T 2cf5_A          150 PEGMAVEQAAPLLCAGVTVYSPLS-HFGLKQPGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSNKKREEALQDLGAD  227 (357)
T ss_dssp             CSSCCHHHHTGGGTHHHHHHHHHH-HTSTTSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSTTHHHHHHTTSCCS
T ss_pred             cCCCCHHHhhhhhhhHHHHHHHHH-hcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHcCCc
Confidence            999999999999999999999864 46788 99999999999999999999999999 8999999999999988 99998


Q ss_pred             c
Q 025895          242 S  242 (246)
Q Consensus       242 ~  242 (246)
                      .
T Consensus       228 ~  228 (357)
T 2cf5_A          228 D  228 (357)
T ss_dssp             C
T ss_pred             e
Confidence            4

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.3e-42  Score=300.24  Aligned_cols=212  Identities=31%  Similarity=0.453  Sum_probs=191.1

Q ss_pred             cccceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCCc
Q 025895            6 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTE   84 (246)
Q Consensus         6 ~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~~   84 (246)
                      ++.+|||+++++++++++++|+|.|+|++|||+|||.+++||++|++++.|.++. ..+|.++|||++|+|+++|+++++
T Consensus         2 ~p~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~v~~   81 (347)
T 2hcy_A            2 IPETQKGVIFYESHGKLEYKDIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPLPVKLPLVGGHEGAGVVVGMGENVKG   81 (347)
T ss_dssp             CCSEEEEEEESSTTCCCEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSEECCCEEEEEEEEECTTCCS
T ss_pred             CCcccEEEEEeCCCCCCEEEEeeCCCCCCCEEEEEEEEEEechhHHHHhcCCCCCCCCCCcccCccceEEEEEECCCCCC
Confidence            4678999999999866999999999999999999999999999999999887652 367999999999999999999999


Q ss_pred             cCCCCEEEeeCCC-CCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEc
Q 025895           85 VQPGDHVIPCYQA-ECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI  163 (246)
Q Consensus        85 ~~~Gd~V~~~~~~-~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i  163 (246)
                      |++||||++.+.. .|+.|.+|..|..++|.+...   .|.. .+|                  +|+||+.+|.+.++++
T Consensus        82 ~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~-~~G------------------~~aey~~v~~~~~~~i  139 (347)
T 2hcy_A           82 WKIGDYAGIKWLNGSCMACEYCELGNESNCPHADL---SGYT-HDG------------------SFQQYATADAVQAAHI  139 (347)
T ss_dssp             CCTTCEEEECSEEECCSSSTTTTTTCGGGCTTCEE---BTTT-BCC------------------SSBSEEEEETTTSEEE
T ss_pred             CcCCCEEEEecCCCCCCCChhhhCCCcccCccccc---cccC-CCC------------------cceeEEEeccccEEEC
Confidence            9999999987653 599999999999999997653   2221 234                  9999999999999999


Q ss_pred             CCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       164 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      |+++++++|+.+++++.|||+++.+ .+++++++|||+|+ |++|++++|+++..|+ +|+++++++++++.++++|++
T Consensus       140 P~~~~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~~~~~~~g~~  216 (347)
T 2hcy_A          140 PQGTDLAQVAPILCAGITVYKALKS-ANLMAGHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKEELFRSIGGE  216 (347)
T ss_dssp             CTTCCHHHHGGGGTHHHHHHHHHHT-TTCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHHHHHHHTTCC
T ss_pred             CCCCCHHHHHHHhhhHHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHHHHHHHcCCc
Confidence            9999999999999999999998744 58999999999998 9999999999999999 999999999999999999987

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=5.8e-42  Score=300.78  Aligned_cols=210  Identities=28%  Similarity=0.440  Sum_probs=192.5

Q ss_pred             eeeeEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCCccC
Q 025895           10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ   86 (246)
Q Consensus        10 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~~~~   86 (246)
                      |||+++++++++  ++++|+|.|+|++|||+|||++++||++|++++.|.++. ..+|.++|||++|+|+++|+++++|+
T Consensus         1 Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~   80 (343)
T 2eih_A            1 MRAVVMRARGGPEVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHVLGADGSGVVDAVGPGVEGFA   80 (343)
T ss_dssp             CEEEEECSSSSGGGEEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSSTTCCSSEECCSEEEEEEEEECSSCCSCC
T ss_pred             CeEEEEecCCCCceEEEEecCCCCCCCCEEEEEEEEEEeCHHHHHHhcCCCCCCCCCCcccccceEEEEEEECCCCCCCC
Confidence            799999999876  899999999999999999999999999999999887643 36799999999999999999999999


Q ss_pred             CCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCC
Q 025895           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (246)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~  166 (246)
                      +||||++.+..+|+.|.+|..|..+.|.+...   .|.. .+|                  +|+||+.+|.+.++++|++
T Consensus        81 vGdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~---~G~~-~~G------------------~~aey~~v~~~~~~~~P~~  138 (343)
T 2eih_A           81 PGDEVVINPGLSCGRCERCLAGEDNLCPRYQI---LGEH-RHG------------------TYAEYVVLPEANLAPKPKN  138 (343)
T ss_dssp             TTCEEEECCEECCSCSHHHHTTCGGGCTTCEE---TTTS-SCC------------------SSBSEEEEEGGGEEECCTT
T ss_pred             CCCEEEECCCCCcccchhhccCcccccccccc---cCcC-CCc------------------cceeEEEeChHHeEECCCC
Confidence            99999999999999999999999999997653   2322 234                  9999999999999999999


Q ss_pred             CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      +++++|+.++.++.|||+++.+..+++++++|||+|+ |++|++++|+++.+|+ +|+++++++++++.++++|++.
T Consensus       139 ~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~ga~~  214 (343)
T 2eih_A          139 LSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKALGADE  214 (343)
T ss_dssp             SCHHHHHHSHHHHHHHHHHHTTTSCCCTTCEEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCSE
T ss_pred             CCHHHHhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcCCCE
Confidence            9999999999999999998876678999999999998 9999999999999999 9999999999999999999873

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.2e-41  Score=302.83  Aligned_cols=219  Identities=26%  Similarity=0.379  Sum_probs=190.7

Q ss_pred             ccceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCC---
Q 025895            7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVT---   83 (246)
Q Consensus         7 ~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~---   83 (246)
                      ..+|||++++++++.++++|+|.|+|++|||+|||++++||++|++++.|.++...+|.++|||++|+|+++| +++   
T Consensus        15 ~~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~P~v~GhE~~G~V~~vG-~V~~~~   93 (380)
T 1vj0_A           15 GLKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIILGHEGAGRVVEVN-GEKRDL   93 (380)
T ss_dssp             CEEEEEEEBCSTTSCCEEEEEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCTTCCSSBCCCCEEEEEEEEES-SCCBCT
T ss_pred             hhheEEEEEecCCCCeEEEEccCCCCCCCEEEEEEeEEeecccchHHhcCCCCCCCCCcccCcCcEEEEEEeC-Cccccc
Confidence            3689999999998559999999999999999999999999999999999876545689999999999999999 998   


Q ss_pred             ---ccCCCCEEEeeCCCCCCCChhhh-CCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEe-ecC
Q 025895           84 ---EVQPGDHVIPCYQAECRECKFCK-SGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVV-HDV  158 (246)
Q Consensus        84 ---~~~~Gd~V~~~~~~~~~~c~~c~-~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~  158 (246)
                         +|++||||++.+..+|+.|.+|. +|..+.|.+...   .|.....+           ......|+|+||+++ |.+
T Consensus        94 ~~~~~~vGdrV~~~~~~~cg~C~~C~~~g~~~~C~~~~~---~g~~~~~~-----------~~~~~~G~~aey~~v~~~~  159 (380)
T 1vj0_A           94 NGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKV---YGINRGCS-----------EYPHLRGCYSSHIVLDPET  159 (380)
T ss_dssp             TSCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEE---TTTTCCSS-----------STTCCCSSSBSEEEECTTC
T ss_pred             cCCCCCCCCEEEEcccCCCCCCHHHhcCCCcccCCCcce---eccccccC-----------CCCCCCccccceEEEcccc
Confidence               89999999999999999999999 999999997643   12100000           000123599999999 999


Q ss_pred             ceEEcCCCCCch-hhhhccccchhhhhhhhhhCC-CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895          159 SVAKIDPQAPLD-KVCLLGCGVPTGLGAVWNTAK-VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       159 ~~~~ip~~~~~~-~aa~l~~~~~ta~~~l~~~~~-~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~  236 (246)
                      .++++|++++++ +|+.+. ++.|||+++ +..+ ++++++|||+|+|++|++++|+|+.+|+.+|++++++++|+++++
T Consensus       160 ~~~~iP~~l~~~~~Aa~~~-~~~ta~~al-~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~  237 (380)
T 1vj0_A          160 DVLKVSEKDDLDVLAMAMC-SGATAYHAF-DEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE  237 (380)
T ss_dssp             CEEEECTTSCHHHHHHHTT-HHHHHHHHH-HTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH
T ss_pred             eEEECCCCCChHHhHhhhc-HHHHHHHHH-HhcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHH
Confidence            999999999999 676666 999999987 5678 999999999999999999999999999449999999999999999


Q ss_pred             hcCCCc
Q 025895          237 SCVSSS  242 (246)
Q Consensus       237 ~lg~~~  242 (246)
                      ++|++.
T Consensus       238 ~lGa~~  243 (380)
T 1vj0_A          238 EIGADL  243 (380)
T ss_dssp             HTTCSE
T ss_pred             HcCCcE
Confidence            999983

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=100.00  E-value=2.8e-42  Score=302.80  Aligned_cols=207  Identities=27%  Similarity=0.450  Sum_probs=187.7

Q ss_pred             eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCC---CCCCCcccccceEEEEEEcCCCCCccC
Q 025895           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGEGVTEVQ   86 (246)
Q Consensus        10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~---~~~~p~v~G~e~vG~V~~vG~~~~~~~   86 (246)
                      |||+++++++++++++|+|.|+|++|||+|||++++||++|++++.|.++   ...+|.++|||++|+|+++|+++++|+
T Consensus         1 Mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~   80 (343)
T 2dq4_A            1 MRALAKLAPEEGLTLVDRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPGVRRPQ   80 (343)
T ss_dssp             CEEEEECSSSSSCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHTTCHHHHHHCCSSEECCCEEEEEEEEECTTCCSSC
T ss_pred             CeEEEEeCCCCcEEEEeccCCCCCCCEEEEEEEEEeechhhHHHHcCCCCccccCCCCCcCCccceEEEEEECCCCCcCC
Confidence            79999999988799999999999999999999999999999999988654   246789999999999999999999999


Q ss_pred             CCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCC
Q 025895           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (246)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~  166 (246)
                      +||||++.+..+|+.|.+|.+|+.++|.+...   .|.. .+                  |+|+||+++|.+.++++|++
T Consensus        81 vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~-~~------------------G~~aey~~v~~~~~~~iP~~  138 (343)
T 2dq4_A           81 VGDHVSLESHIVCHACPACRTGNYHVCLNTQI---LGVD-RD------------------GGFAEYVVVPAENAWVNPKD  138 (343)
T ss_dssp             TTCEEEECCEECCSCSHHHHTTCGGGCTTCEE---BTTT-BC------------------CSSBSEEEEEGGGEEEECTT
T ss_pred             CCCEEEECCCCCCCCChhhhCcCcccCCCcce---ecCC-CC------------------CcceeEEEEchHHeEECCCC
Confidence            99999999999999999999999999997653   2221 23                  49999999999999999999


Q ss_pred             CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      +++++|+.+ .++.|+|+++.+..++ ++++|||+|+|++|++++|+|+.+|+.+|++++++++|+++++++ ++
T Consensus       139 ~~~~~aa~~-~~~~ta~~~l~~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~  210 (343)
T 2dq4_A          139 LPFEVAAIL-EPFGNAVHTVYAGSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-AD  210 (343)
T ss_dssp             SCHHHHTTH-HHHHHHHHHHHSTTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CS
T ss_pred             CCHHHHHhh-hHHHHHHHHHHHhCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HH
Confidence            999999887 4678999988647888 999999999999999999999999997899999999999999998 77

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2.3e-41  Score=302.58  Aligned_cols=215  Identities=28%  Similarity=0.369  Sum_probs=188.5

Q ss_pred             ceeeeEeecCCCCeEEEEeecCCCC-CCe------EEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCC
Q 025895            9 TCKAAVAWEPNKPLVIEDVQVAPPQ-AGE------VRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG   81 (246)
Q Consensus         9 ~~ka~~~~~~~~~~~~~e~~~p~~~-~~e------VlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~   81 (246)
                      +|||+++.++++ ++++|+|.|+|+ ++|      |+|||++++||++|++++.|.++ ..+|.++|||++|+|+++|++
T Consensus         2 ~Mka~~~~~~~~-l~~~~~p~P~~~~~~e~~~~~eVlVkv~a~gi~~~D~~~~~g~~~-~~~p~v~GhE~~G~V~~vG~~   79 (398)
T 1kol_A            2 GNRGVVYLGSGK-VEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTT-AQVGLVLGHEITGEVIEKGRD   79 (398)
T ss_dssp             CEEEEEEEETTE-EEEEEECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSC-CCTTCBCCCCEEEEEEEECTT
T ss_pred             ccEEEEEecCCc-eEEEEecCCCCCCCCcccccceEEEEEEEEeechhhHHHHcCCCC-CCCCcccCcccEEEEEEECCC
Confidence            699999999876 999999999997 899      99999999999999999988653 357899999999999999999


Q ss_pred             CCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCC---CCceecCCCccccccCCcceeeccCCcceeeeEEeecC
Q 025895           82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT---GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV  158 (246)
Q Consensus        82 ~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~---~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  158 (246)
                      +++|++||||++.+...|+.|.+|.+|..++|.+.....   ..|+...               ....|+|+||+++|..
T Consensus        80 v~~~~vGDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~---------------~~~~G~~aey~~v~~~  144 (398)
T 1kol_A           80 VENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDM---------------GDWTGGQAEYVLVPYA  144 (398)
T ss_dssp             CCSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTS---------------CCBCCCSBSEEEESSH
T ss_pred             CCcCCCCCEEEECCcCCCCCChHHhCcCcccCCCcccccccceeeeccC---------------CCCCceeeeEEEecch
Confidence            999999999999888899999999999999999764210   0111000               0123599999999986


Q ss_pred             --ceEEcCCCCCchh----hhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHH
Q 025895          159 --SVAKIDPQAPLDK----VCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF  232 (246)
Q Consensus       159 --~~~~ip~~~~~~~----aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~  232 (246)
                        +++++|+++++++    ++.+++++.|||+++. ..+++++++|||+|+|++|++++|+||.+|+++|++++++++|+
T Consensus       145 ~~~~~~~P~~~~~~~~~~~aa~l~~~~~ta~~al~-~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~  223 (398)
T 1kol_A          145 DFNLLKLPDRDKAMEKIRDLTCLSDILPTGYHGAV-TAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARL  223 (398)
T ss_dssp             HHHCEECSCHHHHHHTHHHHGGGGTHHHHHHHHHH-HTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHH
T ss_pred             hCeEEECCCCcchhhhcccccccccHHHHHHHHHH-HcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHH
Confidence              8999999999887    7888889999999874 78999999999999999999999999999997899999999999


Q ss_pred             HHHhhcCCC
Q 025895          233 DRGMSCVSS  241 (246)
Q Consensus       233 ~~~~~lg~~  241 (246)
                      ++++++|++
T Consensus       224 ~~a~~lGa~  232 (398)
T 1kol_A          224 AHAKAQGFE  232 (398)
T ss_dssp             HHHHHTTCE
T ss_pred             HHHHHcCCc
Confidence            999999997

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=100.00  E-value=2.2e-41  Score=302.75  Aligned_cols=214  Identities=25%  Similarity=0.342  Sum_probs=188.8

Q ss_pred             ceeeeEeecCCCCeEEEEeecCCC-CC-----CeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCC
Q 025895            9 TCKAAVAWEPNKPLVIEDVQVAPP-QA-----GEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGV   82 (246)
Q Consensus         9 ~~ka~~~~~~~~~~~~~e~~~p~~-~~-----~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~   82 (246)
                      +|||++++++++ ++++|+|.|+| ++     +||+|||.+++||++|++++.|.++ ..+|.++|||++|+|+++|+++
T Consensus         2 ~MkA~~~~~~~~-l~~~~~p~P~~~~~~~~~~~eVlVkv~a~gic~~D~~~~~G~~~-~~~p~v~GhE~~G~V~~vG~~v   79 (398)
T 2dph_A            2 GNKSVVYHGTRD-LRVETVPYPKLEHNNRKLEHAVILKVVSTNICGSDQHIYRGRFI-VPKGHVLGHEITGEVVEKGSDV   79 (398)
T ss_dssp             CEEEEEEEETTE-EEEEEECCCCSEETTEECTTCEEEEEEEEECCHHHHHHHTTSSC-CCTTCBCCCCEEEEEEEECTTC
T ss_pred             ccEEEEEEcCCC-EEEEEccCCCCCCCcCCCCCeEEEEEEEEeecHHHHHHhcCCCC-CCCCcccCCceEEEEEEECCCC
Confidence            699999999876 99999999998 68     9999999999999999999988643 3678999999999999999999


Q ss_pred             CccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCC-----CCCceecCCCccccccCCcceeeccCCcceeeeEEeec
Q 025895           83 TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGA-----TGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD  157 (246)
Q Consensus        83 ~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~-----~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~  157 (246)
                      ++|++||||++.+...|+.|.+|.+|..++|.+....     ...|..              .  ....|+|+||+++|.
T Consensus        80 ~~~~vGDrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~G~~--------------~--~~~~G~~aey~~v~~  143 (398)
T 2dph_A           80 ELMDIGDLVSVPFNVACGRCRNCKEARSDVCENNLVNPDADLGAFGFD--------------L--KGWSGGQAEYVLVPY  143 (398)
T ss_dssp             CSCCTTCEEECCSBCCCSCSHHHHTTCGGGCCCTTTCSSSSCCBTTTT--------------B--SSCCCSSBSEEEESS
T ss_pred             CCCCCCCEEEEcCCCCCCCChhhhCcCcccCCCccccccccccccccc--------------c--CCCCceeeeeEEecc
Confidence            9999999999999999999999999999999872110     001110              0  012359999999998


Q ss_pred             C--ceEEcCCCCCchh----hhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 025895          158 V--SVAKIDPQAPLDK----VCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (246)
Q Consensus       158 ~--~~~~ip~~~~~~~----aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~  231 (246)
                      +  .++++|+++++++    ++.+++++.|||+++ +..+++++++|||+|+|++|++++|+|+.+|+.+|++++++++|
T Consensus       144 ~~~~~~~iP~~~~~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~  222 (398)
T 2dph_A          144 ADYMLLKFGDKEQAMEKIKDLTLISDILPTGFHGC-VSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPER  222 (398)
T ss_dssp             HHHHCEECSSHHHHHHTHHHHTTTTTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHH
T ss_pred             ccCeEEECCCCCChhhhcchhhhhcCHHHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHH
Confidence            6  8999999999998    888888999999987 77899999999999999999999999999999889999999999


Q ss_pred             HHHHhhcCCC
Q 025895          232 FDRGMSCVSS  241 (246)
Q Consensus       232 ~~~~~~lg~~  241 (246)
                      +++++++|++
T Consensus       223 ~~~a~~lGa~  232 (398)
T 2dph_A          223 LKLLSDAGFE  232 (398)
T ss_dssp             HHHHHTTTCE
T ss_pred             HHHHHHcCCc
Confidence            9999999996

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=100.00  E-value=5.6e-41  Score=294.95  Aligned_cols=208  Identities=28%  Similarity=0.448  Sum_probs=188.8

Q ss_pred             eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCC--------CCCCCcccccceEEEEEEcCCC
Q 025895           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP--------EGLFPCILGHEAAGIVESVGEG   81 (246)
Q Consensus        10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~--------~~~~p~v~G~e~vG~V~~vG~~   81 (246)
                      |||+++++++++++++|+|.|+|++|||+|||++++||++|++++.|.++        ...+|.++|||++|+|+++|++
T Consensus         1 Mka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~   80 (347)
T 1jvb_A            1 MRAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDE   80 (347)
T ss_dssp             CEEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEECTT
T ss_pred             CeEEEEecCCCCeEEEEeeCCCCCCCeEEEEEEEEEecHHHHHHhcCCCcccccccccCCCCCccccccceEEEEEECCC
Confidence            79999999987799999999999999999999999999999999887554        2367999999999999999999


Q ss_pred             CCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeec-Cce
Q 025895           82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD-VSV  160 (246)
Q Consensus        82 ~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~  160 (246)
                      +++|++||||+..+..+|+.|.+|..|+.++|.+...   .|.. .+                  |+|+||+.+|. +.+
T Consensus        81 v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~---~G~~-~~------------------G~~aey~~v~~~~~~  138 (347)
T 1jvb_A           81 VVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRW---LGIN-FD------------------GAYAEYVIVPHYKYM  138 (347)
T ss_dssp             CCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEE---BTTT-BC------------------CSSBSEEEESCGGGE
T ss_pred             CCCCCCCCEEEeCCCCCCCCChhhhCcCcccCccccc---cccc-CC------------------CcceeEEEecCccce
Confidence            9999999999888888999999999999999997653   2221 23                  49999999999 999


Q ss_pred             EEcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCC-HHHHHHHHHHHHc-CCCeEEEEcCChhHHHHHhhc
Q 025895          161 AKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLG-TVGLAVAEGAKAA-GASRVIGIDIDPKKFDRGMSC  238 (246)
Q Consensus       161 ~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag-~~G~~ai~~a~~~-G~~~vi~~~~~~~~~~~~~~l  238 (246)
                      +++ +++++++|+.+++++.|+|+++ ...+++++++|||+|+| ++|++++|+++.+ |+ +|+++++++++++.++++
T Consensus       139 ~~i-~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~~~~~~~  215 (347)
T 1jvb_A          139 YKL-RRLNAVEAAPLTCSGITTYRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAAKRA  215 (347)
T ss_dssp             EEC-SSSCHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHHHHH
T ss_pred             EEe-CCCCHHHcccchhhHHHHHHHH-HhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHHh
Confidence            999 9999999999999999999987 45889999999999985 9999999999999 99 899999999999999999


Q ss_pred             CCCc
Q 025895          239 VSSS  242 (246)
Q Consensus       239 g~~~  242 (246)
                      |++.
T Consensus       216 g~~~  219 (347)
T 1jvb_A          216 GADY  219 (347)
T ss_dssp             TCSE
T ss_pred             CCCE
Confidence            9873

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=100.00  E-value=7.7e-41  Score=293.79  Aligned_cols=209  Identities=25%  Similarity=0.410  Sum_probs=187.2

Q ss_pred             eeeeEeecC-CCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCC
Q 025895           10 CKAAVAWEP-NKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (246)
Q Consensus        10 ~ka~~~~~~-~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~G   88 (246)
                      |||+++.+. ++.++++|+|.|+|+||||||||.+++||++|++++.|.++. .+|.++|||++|+|+++|+++++|++|
T Consensus         1 MKA~v~~~~~~~~~~l~e~~~P~~~p~eVLVkv~a~gic~~D~~~~~G~~~~-~~p~i~GhE~aG~V~~vG~~V~~~~~G   79 (348)
T 4eez_A            1 MKAAVVRHNPDGYADLVEKELRAIKPNEALLDMEYCGVCHTDLHVAAGDFGN-KAGTVLGHEGIGIVKEIGADVSSLQVG   79 (348)
T ss_dssp             CEEEEECSSCCSSEEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHTTTTCC-CTTCBCCSEEEEEEEEECTTCCSCCTT
T ss_pred             CeEEEEEcCCCCcEEEEEeECCCCCCCEEEEEEEEEEECHHHHHHhcCCCCC-CCCcccceeEEEEEEEECceeeecccC
Confidence            899998653 344999999999999999999999999999999999988754 689999999999999999999999999


Q ss_pred             CEEEeeCC-CCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCC
Q 025895           89 DHVIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA  167 (246)
Q Consensus        89 d~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~  167 (246)
                      |||.+.+. ..|+.|.+|..+..+.|.....   .+.. .+                  |+|+||+.+|.+.++++|+++
T Consensus        80 drV~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~-~~------------------G~~ae~~~~~~~~~~~iP~~~  137 (348)
T 4eez_A           80 DRVSVAWFFEGCGHCEYCVSGNETFCREVKN---AGYS-VD------------------GGMAEEAIVVADYAVKVPDGL  137 (348)
T ss_dssp             CEEEEESEEECCSSSHHHHTTCGGGCTTCEE---BTTT-BC------------------CSSBSEEEEEGGGSCBCCTTS
T ss_pred             CeEeecccccccCccccccCCcccccccccc---cccc-cC------------------CcceeeccccccceeecCCCC
Confidence            99988775 4678999999999999997654   2221 33                  499999999999999999999


Q ss_pred             CchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      ++++|+.+++++.|+|+++ +..++++|++|||+|+|++|.+++|+++.++..+||+++++++|+++++++|++.
T Consensus       138 ~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~  211 (348)
T 4eez_A          138 DPIEASSITCAGVTTYKAI-KVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADV  211 (348)
T ss_dssp             CHHHHHHHHHHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSE
T ss_pred             CHHHHhhcccceeeEEeee-cccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeE
Confidence            9999999999999999976 6678999999999999999999999999875559999999999999999999994

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=100.00  E-value=2.3e-40  Score=292.82  Aligned_cols=209  Identities=22%  Similarity=0.235  Sum_probs=183.4

Q ss_pred             ccceeeeEeecCC-CCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCC-CCCCCcccccceEEEEEEcCCCCCc
Q 025895            7 VITCKAAVAWEPN-KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCILGHEAAGIVESVGEGVTE   84 (246)
Q Consensus         7 ~~~~ka~~~~~~~-~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~-~~~~p~v~G~e~vG~V~~vG~~~~~   84 (246)
                      +.+|||+++++++ +.++++|+|.|+|++|||+|||++++||++|++++.+.++ ...+|.++|||++|+|+++|+++++
T Consensus        25 ~~~mkA~~~~~~~~~~l~~~e~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~v~GhE~~G~V~~vG~~v~~  104 (363)
T 3uog_A           25 SKWMQEWSTETVAPHDLKLAERPVPEAGEHDIIVRTLAVSLNYRDKLVLETGMGLDLAFPFVPASDMSGVVEAVGKSVTR  104 (363)
T ss_dssp             CSEEEEEEBSCTTTTCCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHHCTTCCCCSSBCCCCEEEEEEEEECTTCCS
T ss_pred             chhhEEEEEccCCCCCcEEEeeeCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCcCcccceEEEEEEECCCCCC
Confidence            4679999999764 3499999999999999999999999999999999988765 3478999999999999999999999


Q ss_pred             cCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCC-CceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEc
Q 025895           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG-AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI  163 (246)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~-~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i  163 (246)
                      |++||||++.+..      .|..+. +.|.+...... .|.. .                  .|+|+||+++|.+.++++
T Consensus       105 ~~vGDrV~~~~~~------~c~~g~-~~c~~~~~~~~~~g~~-~------------------~G~~aey~~v~~~~~~~i  158 (363)
T 3uog_A          105 FRPGDRVISTFAP------GWLDGL-RPGTGRTPAYETLGGA-H------------------PGVLSEYVVLPEGWFVAA  158 (363)
T ss_dssp             CCTTCEEEECSST------TCCSSS-CCSCSSCCCCCCTTTT-S------------------CCCCBSEEEEEGGGEEEC
T ss_pred             CCCCCEEEEeccc------cccccc-cccccccccccccCcC-C------------------CCcceeEEEechHHeEEC
Confidence            9999999987653      566777 78874221100 1211 2                  349999999999999999


Q ss_pred             CCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       164 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      |+++++++|+.+++++.|||+++.+..+++++++|||+|+|++|++++|+|+.+|+ +|++++++++|+++++++|++.
T Consensus       159 P~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~  236 (363)
T 3uog_A          159 PKSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFALGADH  236 (363)
T ss_dssp             CTTSCHHHHHTTTTHHHHHHHHHTTTTCCCTTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTCSE
T ss_pred             CCCCCHHHHhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEecCchhHHHHHHcCCCE
Confidence            99999999999999999999998888999999999999999999999999999999 9999999999999999999984

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=100.00  E-value=3.1e-40  Score=292.37  Aligned_cols=219  Identities=24%  Similarity=0.364  Sum_probs=186.7

Q ss_pred             ccceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccC
Q 025895            7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQ   86 (246)
Q Consensus         7 ~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~   86 (246)
                      +|+++++..++.++.++++|+|.|+|++|||+|||.+++||++|++.+.+.++...+|.++|||++|+|+++|+++++|+
T Consensus        14 ~mk~~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~V~~~~   93 (366)
T 1yqd_A           14 PVKAFGWAARDQSGHLSPFNFSRRATGEEDVRFKVLYCGVCHSDLHSIKNDWGFSMYPLVPGHEIVGEVTEVGSKVKKVN   93 (366)
T ss_dssp             SEEEEEEEECSTTCCEEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHHTSSSCCCSSBCCCCCEEEEEEEECTTCCSCC
T ss_pred             CeeEEEEEEcCCCCCcEEEEccCCCCCCCeEEEEEEEEeechhhHHHHcCCCCCCCCCEecccceEEEEEEECCCCCcCC
Confidence            35566666666666699999999999999999999999999999999988765556899999999999999999999999


Q ss_pred             CCCEEEeeCC-CCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCC
Q 025895           87 PGDHVIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP  165 (246)
Q Consensus        87 ~Gd~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~  165 (246)
                      +||||++.+. ..|+.|.+|..+..+.|.+.... ..|.. ..|             ....|+|+||+++|.+.++++|+
T Consensus        94 vGDrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~-~~~~~-~~g-------------~~~~G~~aey~~v~~~~~~~~P~  158 (366)
T 1yqd_A           94 VGDKVGVGCLVGACHSCESCANDLENYCPKMILT-YASIY-HDG-------------TITYGGYSNHMVANERYIIRFPD  158 (366)
T ss_dssp             TTCEEEECSEEECCSSSHHHHTTCGGGCTTCEES-SSSBC-TTS-------------CBCCCSSBSEEEEEGGGCEECCT
T ss_pred             CCCEEEEcCCcCCCCCChhhhCcCcccCCccccc-ccccc-cCC-------------CcCCCccccEEEEchhhEEECCC
Confidence            9999987654 58999999999999999654321 01100 001             11245999999999999999999


Q ss_pred             CCCchhhhhccccchhhhhhhhhhCCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh-hcCCCc
Q 025895          166 QAPLDKVCLLGCGVPTGLGAVWNTAKVE-PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM-SCVSSS  242 (246)
Q Consensus       166 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~-~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~-~lg~~~  242 (246)
                      ++++++|+.+++++.|||+++. ..+++ ++++|||+|+|++|++++|+|+.+|+ +|++++++++|++.++ ++|++.
T Consensus       159 ~ls~~~aa~l~~~~~ta~~al~-~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~lGa~~  235 (366)
T 1yqd_A          159 NMPLDGGAPLLCAGITVYSPLK-YFGLDEPGKHIGIVGLGGLGHVAVKFAKAFGS-KVTVISTSPSKKEEALKNFGADS  235 (366)
T ss_dssp             TSCTTTTGGGGTHHHHHHHHHH-HTTCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGHHHHHHTSCCSE
T ss_pred             CCCHHHhhhhhhhHHHHHHHHH-hcCcCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcCCce
Confidence            9999999999999999999874 46777 99999999999999999999999999 8999999999999887 899983

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=100.00  E-value=3.1e-41  Score=297.77  Aligned_cols=209  Identities=19%  Similarity=0.200  Sum_probs=185.1

Q ss_pred             eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCC---CcccccceEEEEEEcCCCCCccC
Q 025895           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLF---PCILGHEAAGIVESVGEGVTEVQ   86 (246)
Q Consensus        10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~---p~v~G~e~vG~V~~vG~~~~~~~   86 (246)
                      |||+++++++++++++|+|.|+|++|||+|||++++||++|++++.+.++...+   |.++|||++| |+++|++ ++|+
T Consensus         1 MkA~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G-V~~vG~~-~~~~   78 (357)
T 2b5w_A            1 MKAIAVKRGEDRPVVIEKPRPEPESGEALVRTLRVGVCGTDHEVIAGGHGGFPEGEDHLVLGHEAVG-VVVDPND-TELE   78 (357)
T ss_dssp             CEEEEEETTCSSCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHSCSTTSCTTCSEEECCSEEEE-EEEECTT-SSCC
T ss_pred             CeEEEEeCCCCceEEEECCCCCCCcCEEEEEEeEEeechhcHHHHcCCCCCCCCCCCCcccCceeEE-EEEECCC-CCCC
Confidence            799999999888999999999999999999999999999999999987654456   8999999999 9999999 9999


Q ss_pred             CCCEEEeeCCCC--CCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcC
Q 025895           87 PGDHVIPCYQAE--CRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (246)
Q Consensus        87 ~Gd~V~~~~~~~--~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip  164 (246)
                      +||||++.+...  |+.|.+|.+|+.++|.+..... .|....+|                  +|+||+++|++.++++|
T Consensus        79 vGdrV~~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~-~g~~~~~G------------------~~aey~~v~~~~~~~iP  139 (357)
T 2b5w_A           79 EGDIVVPTVRRPPASGTNEYFERDQPDMAPDGMYFE-RGIVGAHG------------------YMSEFFTSPEKYLVRIP  139 (357)
T ss_dssp             TTCEEEECSEECCTTCCCHHHHTTCGGGCCTTSCEE-ETTBEECC------------------SCBSEEEEEGGGEEECC
T ss_pred             CCCEEEECCcCCCCCCCChHHhCcCcccCCCCcccc-cCccCCCc------------------ceeeEEEEchHHeEECC
Confidence            999999988777  9999999999999999865310 02111234                  99999999999999999


Q ss_pred             CCCCchhhhhccccchhhhhhhhhhCCCCCC------CEEEEECCCHHHHHH-HHHH-HHcCCCeEEEEcCChh---HHH
Q 025895          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPG------SIVAVFGLGTVGLAV-AEGA-KAAGASRVIGIDIDPK---KFD  233 (246)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~------~~VlI~Gag~~G~~a-i~~a-~~~G~~~vi~~~~~~~---~~~  233 (246)
                      ++++ ++| .++.++.|||+++ +..+++++      ++|||+|+|++|+++ +|+| +.+|+++|++++++++   |++
T Consensus       140 ~~~~-~~a-al~~~~~ta~~al-~~~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~  216 (357)
T 2b5w_A          140 RSQA-ELG-FLIEPISITEKAL-EHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTID  216 (357)
T ss_dssp             GGGS-TTG-GGHHHHHHHHHHH-HHHHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHH
T ss_pred             CCcc-hhh-hhhchHHHHHHHH-HhcCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHH
Confidence            9999 655 4667899999987 66888999      999999999999999 9999 9999955999999999   999


Q ss_pred             HHhhcCCCc
Q 025895          234 RGMSCVSSS  242 (246)
Q Consensus       234 ~~~~lg~~~  242 (246)
                      +++++|++.
T Consensus       217 ~~~~lGa~~  225 (357)
T 2b5w_A          217 IIEELDATY  225 (357)
T ss_dssp             HHHHTTCEE
T ss_pred             HHHHcCCcc
Confidence            999999974

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=100.00  E-value=3.3e-41  Score=302.28  Aligned_cols=214  Identities=24%  Similarity=0.329  Sum_probs=187.2

Q ss_pred             cccceeeeEeecCCCCeEEEEeecCC-CCCCeEEEEEeeeecchhhhhhhcCCC------C-CCCCCcccccceEEEEEE
Q 025895            6 QVITCKAAVAWEPNKPLVIEDVQVAP-PQAGEVRIKILFTALCHTDAYTWSGKD------P-EGLFPCILGHEAAGIVES   77 (246)
Q Consensus         6 ~~~~~ka~~~~~~~~~~~~~e~~~p~-~~~~eVlVkv~~~~i~~~D~~~~~~~~------~-~~~~p~v~G~e~vG~V~~   77 (246)
                      .+.+|+++++..++. ++++|+|.|+ |++|||+|||.+++||++|++++.+..      + ...+|.++|||++|+|++
T Consensus        27 ~~~~m~a~~~~~~~~-l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~P~i~G~E~~G~V~~  105 (404)
T 3ip1_A           27 GKLTWLGSKVWRYPE-VRVEEVPEPRIEKPTEIIIKVKACGICGSDVHMAQTDEEGYILYPGLTGFPVTLGHEFSGVVVE  105 (404)
T ss_dssp             TTBBSCGGGTEEEEE-EEEEEECCCCCCSTTEEEEEEEEEECCHHHHHHHCBCTTSBBSCCSCBCSSEECCCEEEEEEEE
T ss_pred             hhhhcceEEEEeCCc-eEEEEcCCCCCCCcCEEEEEEeEeeeCHHHHHHhcCCCCccccccccCCCCcccCccceEEEEE
Confidence            345666666666655 8999999999 999999999999999999999987642      1 236799999999999999


Q ss_pred             cCCCC------CccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceee
Q 025895           78 VGEGV------TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQ  151 (246)
Q Consensus        78 vG~~~------~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~  151 (246)
                      +|+++      ++|++||||++.+...|+.|.+|.+|..+.|.+...   .|.. .+|                  +|+|
T Consensus       106 vG~~v~~~~~~~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~---~g~~-~~G------------------~~ae  163 (404)
T 3ip1_A          106 AGPEAINRRTNKRFEIGEPVCAEEMLWCGHCRPCAEGFPNHCENLNE---LGFN-VDG------------------AFAE  163 (404)
T ss_dssp             ECTTCEETTTTEECCTTCEEEECSEECCSCSHHHHTTCGGGCTTCEE---BTTT-BCC------------------SSBS
T ss_pred             ECCCccccccCCCCCCCCEEEECCccCCCCCHHHHCcCcccCccccc---cCCC-CCC------------------CCcc
Confidence            99999      889999999999999999999999999999998764   2322 334                  9999


Q ss_pred             eEEeecCceEEcCCCCC------chhhhhccccchhhhhhhhhh-CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEE
Q 025895          152 YTVVHDVSVAKIDPQAP------LDKVCLLGCGVPTGLGAVWNT-AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIG  224 (246)
Q Consensus       152 ~~~~~~~~~~~ip~~~~------~~~aa~l~~~~~ta~~~l~~~-~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~  224 (246)
                      |+++|.+.++++|++++      +.+++.++.++.|||+++... .++++|++|||+|+|++|++++|+|+.+|+.+|++
T Consensus       164 y~~v~~~~~~~iP~~~~~~~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~  243 (404)
T 3ip1_A          164 YVKVDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVAYNAVIVRGGGIRPGDNVVILGGGPIGLAAVAILKHAGASKVIL  243 (404)
T ss_dssp             EEEEEGGGEEECGGGBTTBCTHHHHHHHHTHHHHHHHHHHHTTTSCCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEE
T ss_pred             eEEechHHeEeccccccccccccchhHHhhhhHHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence            99999999999999886      345788888999999987655 48999999999999999999999999999988999


Q ss_pred             EcCChhHHHHHhhcCCCc
Q 025895          225 IDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       225 ~~~~~~~~~~~~~lg~~~  242 (246)
                      ++++++|+++++++|++.
T Consensus       244 ~~~~~~~~~~~~~lGa~~  261 (404)
T 3ip1_A          244 SEPSEVRRNLAKELGADH  261 (404)
T ss_dssp             ECSCHHHHHHHHHHTCSE
T ss_pred             ECCCHHHHHHHHHcCCCE
Confidence            999999999999999984

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=100.00  E-value=1.2e-39  Score=282.86  Aligned_cols=188  Identities=14%  Similarity=0.135  Sum_probs=172.0

Q ss_pred             ccceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccC
Q 025895            7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQ   86 (246)
Q Consensus         7 ~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~   86 (246)
                      |.||||+++++..+.++++|+|.|+|++|||+|||.+++||++|++.+.+.++...+|.++|||++|+|+++|+++++|+
T Consensus         2 M~tMka~~~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~   81 (315)
T 3goh_A            2 MEQHQVWAYQTKTHSVTLNSVDIPALAADDILVQNQAIGINPVDWKFIKANPINWSNGHVPGVDGAGVIVKVGAKVDSKM   81 (315)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHHHCTTCCCTTCCCCSEEEEEEEEECTTSCGGG
T ss_pred             CcceEEEEEeCCCCeeEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHcCCCCcCCCCCEeeeeeEEEEEEeCCCCCCCC
Confidence            56799999995334499999999999999999999999999999999998876668899999999999999999999999


Q ss_pred             CCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCC
Q 025895           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (246)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~  166 (246)
                      +||||+..+...                            .+|                  +|+||+.+|.+.++++|++
T Consensus        82 vGdrV~~~~~~~----------------------------~~G------------------~~aey~~v~~~~~~~iP~~  115 (315)
T 3goh_A           82 LGRRVAYHTSLK----------------------------RHG------------------SFAEFTVLNTDRVMTLPDN  115 (315)
T ss_dssp             TTCEEEEECCTT----------------------------SCC------------------SSBSEEEEETTSEEECCTT
T ss_pred             CCCEEEEeCCCC----------------------------CCc------------------ccccEEEEcHHHhccCcCC
Confidence            999998764210                            233                  9999999999999999999


Q ss_pred             CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCcc
Q 025895          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSSK  243 (246)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~~  243 (246)
                      +++++|+.+++++.|||+++ +..+++++++|||+|+|++|++++|+|+.+|+ +|++++ +++|+++++++|++..
T Consensus       116 ~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~lGa~~v  189 (315)
T 3goh_A          116 LSFERAAALPCPLLTAWQAF-EKIPLTKQREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAKRGVRHL  189 (315)
T ss_dssp             SCHHHHHTSHHHHHHHHHHH-TTSCCCSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHHHTEEEE
T ss_pred             CCHHHHhhCccHHHHHHHHH-hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHHcCCCEE
Confidence            99999999999999999988 88999999999999999999999999999999 999999 9999999999999754

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=100.00  E-value=2.7e-39  Score=293.23  Aligned_cols=217  Identities=19%  Similarity=0.200  Sum_probs=186.8

Q ss_pred             CCCcccceeeeEeecCC-------------CCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhc--------------
Q 025895            3 TEGQVITCKAAVAWEPN-------------KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWS--------------   55 (246)
Q Consensus         3 ~~~~~~~~ka~~~~~~~-------------~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~--------------   55 (246)
                      +.+.+.||||+++++++             ++++++|+|.|+|++|||+|||++++||++|++...              
T Consensus        18 ~~~~p~tmkA~v~~~~~~~~~~~~~~~~~~~~l~~~e~p~P~~~~~eVlVrV~a~gic~sD~~~~~~~~~~~~~~~~~~~   97 (447)
T 4a0s_A           18 AAPVPDTYLALHLRAEDADMFKGVADKDVRKSLRLGEVPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQNA   97 (447)
T ss_dssp             HSCCCSEEEEEEEEGGGTTTTTTCSSCCHHHHCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSCHHHHHHHHH
T ss_pred             ccCCChhheeeeeeccccccccccccCCCCCCceEEeccCCCCCCCeEEEEEEEEEECcHHhhhhccCcccchhhhhhhc
Confidence            44678999999999988             349999999999999999999999999999975432              


Q ss_pred             --CCCC-CCCCC-cccccceEEEEEEcCCCCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCcc
Q 025895           56 --GKDP-EGLFP-CILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKS  131 (246)
Q Consensus        56 --~~~~-~~~~p-~v~G~e~vG~V~~vG~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~  131 (246)
                        +.+. ...+| .++|||++|+|+++|+++++|++||||++.+...|+.|..| .+..+.|.+.+.   .|+...+|  
T Consensus        98 ~~g~~~~~~~~P~~v~GhE~~G~V~~vG~~V~~~~vGDrV~~~~~~~~~~~~~~-~~~~~~c~~~~~---~G~~~~~G--  171 (447)
T 4a0s_A           98 RQGGWATRHDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVIVHPAHVDEQEPAT-HGDGMLGTEQRA---WGFETNFG--  171 (447)
T ss_dssp             TTCGGGGGGCCSEEECCSCEEEEEEEECTTCCSCCTTCEEEECSEECCTTSGGG-GTCTTCSTTCEE---TTTTSSSC--
T ss_pred             ccCccccccCCCCcccccceeEEEEEECCCCCCCCCCCEEEEecCcCcCccccc-cccccccccccc---ccccCCCC--
Confidence              1111 12456 69999999999999999999999999999998888888754 577888887654   33331234  


Q ss_pred             ccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCchhhhhccccchhhhhhhhh--hCCCCCCCEEEEECC-CHHHH
Q 025895          132 RFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN--TAKVEPGSIVAVFGL-GTVGL  208 (246)
Q Consensus       132 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~--~~~~~~~~~VlI~Ga-g~~G~  208 (246)
                                      +|+||+++|.++++++|+++++++|+.+++++.|||+++..  ..++++|++|||+|+ |++|+
T Consensus       172 ----------------~~aey~~v~~~~~~~iP~~ls~~~aA~l~~~~~tA~~al~~~~~~~~~~g~~VlV~GasG~iG~  235 (447)
T 4a0s_A          172 ----------------GLAEYGVVRASQLLPKPAHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGS  235 (447)
T ss_dssp             ----------------SSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHH
T ss_pred             ----------------ceeeeeecCHHHcEECCCCCCHHHHHHhHHHHHHHHHHHHhhhccCCCCCCEEEEECCCCHHHH
Confidence                            99999999999999999999999999999899999998764  388999999999998 99999


Q ss_pred             HHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          209 AVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       209 ~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      +++|+|+.+|+ +|++++++++|+++++++|++.
T Consensus       236 ~a~qla~~~Ga-~vi~~~~~~~~~~~~~~lGa~~  268 (447)
T 4a0s_A          236 YAIQFVKNGGG-IPVAVVSSAQKEAAVRALGCDL  268 (447)
T ss_dssp             HHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCCE
Confidence            99999999999 8999999999999999999984

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=100.00  E-value=1.5e-39  Score=287.83  Aligned_cols=208  Identities=20%  Similarity=0.261  Sum_probs=179.2

Q ss_pred             eeeeEeecCCCCeEEEEeecCCCCC-CeEEEEEeeeecchhhhhhhcC--CCCCCCC---CcccccceEEEEEEcCCCCC
Q 025895           10 CKAAVAWEPNKPLVIEDVQVAPPQA-GEVRIKILFTALCHTDAYTWSG--KDPEGLF---PCILGHEAAGIVESVGEGVT   83 (246)
Q Consensus        10 ~ka~~~~~~~~~~~~~e~~~p~~~~-~eVlVkv~~~~i~~~D~~~~~~--~~~~~~~---p~v~G~e~vG~V~~vG~~~~   83 (246)
                      |||+++++++++++++|+|.|+|++ +||+|||.+++||++|++++.|  .++...+   |.++|||++|+|++  ++ +
T Consensus         1 MkA~~~~~~g~~l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~p~v~G~E~~G~V~~--~~-~   77 (366)
T 2cdc_A            1 MKAIIVKPPNAGVQVKDVDEKKLDSYGKIKIRTIYNGICGADREIVNGKLTLSTLPKGKDFLVLGHEAIGVVEE--SY-H   77 (366)
T ss_dssp             CEEEEECTTSCCCEEEECCGGGSCCCSSEEEEEEEEEECHHHHHHHTTCC-------CCSCEECCSEEEEEECS--CC-S
T ss_pred             CeEEEEeCCCCceEEEECcCCCCCCCCEEEEEEEEEeeccccHHHHcCCCCCCCCCcCCCCCcCCcceEEEEEe--CC-C
Confidence            7999999988779999999999999 9999999999999999999988  5443356   89999999999999  66 8


Q ss_pred             ccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEc
Q 025895           84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI  163 (246)
Q Consensus        84 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i  163 (246)
                      +|++||||++.+..+|+.|.+|.+|..++|.+..... .|....                  .|+|+||+++|.+.++++
T Consensus        78 ~~~~GDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~-~g~~~~------------------~G~~aey~~v~~~~~~~i  138 (366)
T 2cdc_A           78 GFSQGDLVMPVNRRGCGICRNCLVGRPDFCETGEFGE-AGIHKM------------------DGFMREWWYDDPKYLVKI  138 (366)
T ss_dssp             SCCTTCEEEECSEECCSSSHHHHTTCGGGCSSSCCEE-ETTBEE------------------CCSCBSEEEECGGGEEEE
T ss_pred             CCCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCccc-CCccCC------------------CCceeEEEEechHHeEEC
Confidence            8999999999999999999999999999999765310 011101                  249999999999999999


Q ss_pred             CCCCCchhhhhccccchhhhhhhh--h--hCCCC--C-------CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh-
Q 025895          164 DPQAPLDKVCLLGCGVPTGLGAVW--N--TAKVE--P-------GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP-  229 (246)
Q Consensus       164 p~~~~~~~aa~l~~~~~ta~~~l~--~--~~~~~--~-------~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~-  229 (246)
                      |++++ ++|+ ++.++.|||+++.  +  ..+++  +       +++|||+|+|++|++++|+++.+|+ +|+++++++ 
T Consensus       139 P~~l~-~~Aa-l~~~~~ta~~al~~~~~~~~~~~~~~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~  215 (366)
T 2cdc_A          139 PKSIE-DIGI-LAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGL-EVWMANRREP  215 (366)
T ss_dssp             CGGGT-TTGG-GHHHHHHHHHHHHHHHHHGGGSSCCSCTTSSSTTCEEEEESCHHHHHHHHHHHHHHTC-EEEEEESSCC
T ss_pred             cCCcc-hhhh-hcCcHHHHHHHHHhhhhcccCccccccccccCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCcc
Confidence            99999 8775 5678899999886  4  67888  8       9999999999999999999999999 999999999 


Q ss_pred             --hHHHHHhhcCCCc
Q 025895          230 --KKFDRGMSCVSSS  242 (246)
Q Consensus       230 --~~~~~~~~lg~~~  242 (246)
                        +|+++++++|++.
T Consensus       216 ~~~~~~~~~~~ga~~  230 (366)
T 2cdc_A          216 TEVEQTVIEETKTNY  230 (366)
T ss_dssp             CHHHHHHHHHHTCEE
T ss_pred             chHHHHHHHHhCCce
Confidence              9999999999863

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=100.00  E-value=2.5e-39  Score=294.30  Aligned_cols=217  Identities=19%  Similarity=0.189  Sum_probs=187.3

Q ss_pred             CCCcccceeeeEeecC---------------CCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCC--------
Q 025895            3 TEGQVITCKAAVAWEP---------------NKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP--------   59 (246)
Q Consensus         3 ~~~~~~~~ka~~~~~~---------------~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~--------   59 (246)
                      +.+.+.+|||++++++               +++++++++|.|+|++|||+|||.+++||++|++...+...        
T Consensus        24 ~~~iP~tmkA~v~~~~~~~~~~~~~~~~~~~~~~l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~~~~~~~~~~~~  103 (456)
T 3krt_A           24 ALPLPESYRAITVHKDETEMFAGLETRDKDPRKSIHLDDVPVPELGPGEALVAVMASSVNYNSVHTSIFEPLSTFGFLER  103 (456)
T ss_dssp             HSCCCSCEEEEEEEGGGTTTTTTCCGGGCCHHHHCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTCSSCSHHHHHH
T ss_pred             cCCCCcceEEEEEeccccccccccccccCCCCCCcEEEEccCCCCCCCeEEEEEEEEEecchhhhhhhcCcccchhhhhh
Confidence            3456789999999987               24499999999999999999999999999999876432210        


Q ss_pred             ---------CCCCC-cccccceEEEEEEcCCCCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCC
Q 025895           60 ---------EGLFP-CILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDR  129 (246)
Q Consensus        60 ---------~~~~p-~v~G~e~vG~V~~vG~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g  129 (246)
                               ...+| .++|||++|+|+++|+++++|++||+|++.+. .|..|..|..+..+.|.+...   .|+...+ 
T Consensus       104 ~g~~~~~~~~~~~P~~v~GhE~~G~Vv~vG~~v~~~~vGdrV~~~~~-~c~~~~~~~~~~~~~c~~~~~---~G~~~~~-  178 (456)
T 3krt_A          104 YGRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCL-SVELESSDGHNDTMLDPEQRI---WGFETNF-  178 (456)
T ss_dssp             HHTSCHHHHTTCCSEEECCSCCEEEEEEECTTCCSCCTTCEEEECCE-ECCCCSGGGTTSGGGCTTCEE---TTTTSSS-
T ss_pred             ccccccccccCCCCcccccceeEEEEEEECCCCCCCCCCCEEEEeCC-cccccccccccccccCccccc---cccCCCC-
Confidence                     12456 69999999999999999999999999998654 688899998888999987654   3333223 


Q ss_pred             ccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCchhhhhccccchhhhhhhhhh--CCCCCCCEEEEECC-CHH
Q 025895          130 KSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT--AKVEPGSIVAVFGL-GTV  206 (246)
Q Consensus       130 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~--~~~~~~~~VlI~Ga-g~~  206 (246)
                                       |+|+||+++|.++++++|+++++++|+.+++++.|||+++...  .++++|++|||+|+ |++
T Consensus       179 -----------------G~~aey~~v~~~~~~~~P~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~g~~VlV~GasG~v  241 (456)
T 3krt_A          179 -----------------GGLAEIALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGL  241 (456)
T ss_dssp             -----------------CSSBSEEEEEGGGEEECCTTSCHHHHHSSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHH
T ss_pred             -----------------CcccceEEechHHeeECCCCCCHHHHHHhhhHHHHHHHHHHhhcccCCCCCCEEEEECCCCHH
Confidence                             4999999999999999999999999999998999999987654  78999999999998 999


Q ss_pred             HHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          207 GLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       207 G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      |++++|+|+.+|+ ++++++++++|+++++++|++.
T Consensus       242 G~~avqlak~~Ga-~vi~~~~~~~~~~~~~~lGa~~  276 (456)
T 3krt_A          242 GSYATQFALAGGA-NPICVVSSPQKAEICRAMGAEA  276 (456)
T ss_dssp             HHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCCE
T ss_pred             HHHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCCcE
Confidence            9999999999999 8999999999999999999983

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=4.3e-38  Score=276.30  Aligned_cols=194  Identities=27%  Similarity=0.307  Sum_probs=171.3

Q ss_pred             CCCCCcccceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC--CCCCcccccceEEEEEEc
Q 025895            1 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE--GLFPCILGHEAAGIVESV   78 (246)
Q Consensus         1 m~~~~~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~--~~~p~v~G~e~vG~V~~v   78 (246)
                      |+  .++.+|||+++.+++++++++|+|.|+|++|||+|||++++||++|++++.+....  ..+|.++|||++|+|+++
T Consensus         1 Ms--~~~~~mka~~~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~P~v~G~E~~G~V~~v   78 (343)
T 3gaz_A            1 MS--LTTPTMIAAVVEEANGPFVLRKLARPQPAPGQVLVQIEASGTNPLDAKIRAGEAPHAQQPLPAILGMDLAGTVVAV   78 (343)
T ss_dssp             -------CEEEEEEECSTTCCEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCCGGGCCCSSBCCCCEEEEEEEEE
T ss_pred             CC--CCchhheEEEEecCCCceEEEeccCCCCCCCEEEEEEEEEEeCHhhHHHhCCCCCCCCCCCCcccCcceEEEEEEE
Confidence            55  24578999999999988999999999999999999999999999999999886532  468999999999999999


Q ss_pred             CCCCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecC
Q 025895           79 GEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV  158 (246)
Q Consensus        79 G~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  158 (246)
                      |+++++|++||||+....                          |....+                  |+|+||+++|.+
T Consensus        79 G~~v~~~~vGdrV~~~~~--------------------------g~~~~~------------------G~~aey~~v~~~  114 (343)
T 3gaz_A           79 GPEVDSFRVGDAVFGLTG--------------------------GVGGLQ------------------GTHAQFAAVDAR  114 (343)
T ss_dssp             CTTCCSCCTTCEEEEECC--------------------------SSTTCC------------------CSSBSEEEEEGG
T ss_pred             CCCCCCCCCCCEEEEEeC--------------------------CCCCCC------------------cceeeEEEecHH
Confidence            999999999999986431                          000023                  399999999999


Q ss_pred             ceEEcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          159 SVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       159 ~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      .++++|+++++++|+.+++++.|||+++.+..+++++++|||+|+ |++|++++|+|+..|+ +|+++ .+++|++++++
T Consensus       115 ~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga-~Vi~~-~~~~~~~~~~~  192 (343)
T 3gaz_A          115 LLASKPAALTMRQASVLPLVFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGA-RVFAT-ARGSDLEYVRD  192 (343)
T ss_dssp             GEEECCTTSCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEE-ECHHHHHHHHH
T ss_pred             HeeeCCCCCCHHHHHHhhhhHHHHHHHHHHhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEE-eCHHHHHHHHH
Confidence            999999999999999999999999999888899999999999995 9999999999999999 89999 89999999999


Q ss_pred             cCCCc
Q 025895          238 CVSSS  242 (246)
Q Consensus       238 lg~~~  242 (246)
                      +|++.
T Consensus       193 lGa~~  197 (343)
T 3gaz_A          193 LGATP  197 (343)
T ss_dssp             HTSEE
T ss_pred             cCCCE
Confidence            99874

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=100.00  E-value=5.5e-38  Score=276.63  Aligned_cols=190  Identities=19%  Similarity=0.174  Sum_probs=174.0

Q ss_pred             CCCcccceeeeEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCC-CCCcccccceEEEEEEcC
Q 025895            3 TEGQVITCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPCILGHEAAGIVESVG   79 (246)
Q Consensus         3 ~~~~~~~~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~-~~p~v~G~e~vG~V~~vG   79 (246)
                      +.+++.+|||+++.+++++  ++++|+|.|+|++|||+|||.+++||++|++.+.|.++.. .+|.++|||++|+|+++|
T Consensus        22 ~~~~p~~MkA~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~vG  101 (353)
T 4dup_A           22 SMSLPQEMRFVDLKSFGGPDVMVIGKRPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPPPKDASPILGLELSGEIVGVG  101 (353)
T ss_dssp             -CCCCSSEEEEEESSSSSGGGEEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTSSCCCTTSCSSSCCEEEEEEEEEC
T ss_pred             cCCCChheeEEEEccCCCccceEEEeccCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCccccccEEEEEEEC
Confidence            3456789999999998766  9999999999999999999999999999999999877543 578999999999999999


Q ss_pred             CCCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCc
Q 025895           80 EGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVS  159 (246)
Q Consensus        80 ~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  159 (246)
                      +++++|++||||+...                               .+|                  +|+||+++|.+.
T Consensus       102 ~~v~~~~vGdrV~~~~-------------------------------~~G------------------~~aey~~v~~~~  132 (353)
T 4dup_A          102 PGVSGYAVGDKVCGLA-------------------------------NGG------------------AYAEYCLLPAGQ  132 (353)
T ss_dssp             TTCCSCCTTCEEEEEC-------------------------------SSC------------------CSBSEEEEEGGG
T ss_pred             CCCCCCCCCCEEEEec-------------------------------CCC------------------ceeeEEEEcHHH
Confidence            9999999999997542                               223                  899999999999


Q ss_pred             eEEcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhc
Q 025895          160 VAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSC  238 (246)
Q Consensus       160 ~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~l  238 (246)
                      ++++|+++++++|+.+++++.|||+++.+..+++++++|||+|+ |++|++++|+++.+|+ +|++++++++|+++++++
T Consensus       133 ~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~l  211 (353)
T 4dup_A          133 ILPFPKGYDAVKAAALPETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGA-EVYATAGSTGKCEACERL  211 (353)
T ss_dssp             EEECCTTCCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHH
T ss_pred             cEeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc
Confidence            99999999999999999999999999888899999999999965 9999999999999999 899999999999999999


Q ss_pred             CCCc
Q 025895          239 VSSS  242 (246)
Q Consensus       239 g~~~  242 (246)
                      |++.
T Consensus       212 Ga~~  215 (353)
T 4dup_A          212 GAKR  215 (353)
T ss_dssp             TCSE
T ss_pred             CCCE
Confidence            9983

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=100.00  E-value=5.9e-38  Score=272.92  Aligned_cols=190  Identities=21%  Similarity=0.213  Sum_probs=168.0

Q ss_pred             CcccceeeeEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCC-----CCCCCCcccccceEEEEEE
Q 025895            5 GQVITCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD-----PEGLFPCILGHEAAGIVES   77 (246)
Q Consensus         5 ~~~~~~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~-----~~~~~p~v~G~e~vG~V~~   77 (246)
                      +.|++|||+++.+++++  ++++|+|.|+|++|||+|||++++||++|++.+.|..     ....+|.++|||++|+|++
T Consensus         2 ~~m~~Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~p~v~G~E~~G~V~~   81 (321)
T 3tqh_A            2 NAMKEMKAIQFDQFGPPKVLKLVDTPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKNNLPSGLGYDFSGEVIE   81 (321)
T ss_dssp             ---CEEEEEEESSSCSGGGEEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSHHHHHHTTSCSBCCCCEEEEEEEE
T ss_pred             CccccceEEEEccCCCcceeEEEecCCCCCCCCEEEEEEEEEEcCHHHHHHhcCCccccccccCCCCCcccceeEEEEEE
Confidence            34678999999998887  9999999999999999999999999999999988832     2346799999999999999


Q ss_pred             cCCCCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeec
Q 025895           78 VGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD  157 (246)
Q Consensus        78 vG~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~  157 (246)
                      +|+++++|++||||+..+..++                           .+|                  +|+||+.+|.
T Consensus        82 vG~~v~~~~~GdrV~~~~~~~~---------------------------~~G------------------~~aey~~v~~  116 (321)
T 3tqh_A           82 LGSDVNNVNIGDKVMGIAGFPD---------------------------HPC------------------CYAEYVCASP  116 (321)
T ss_dssp             ECTTCCSCCTTCEEEEECSTTT---------------------------CCC------------------CSBSEEEECG
T ss_pred             eCCCCCCCCCCCEEEEccCCCC---------------------------CCC------------------cceEEEEecH
Confidence            9999999999999987643110                           233                  9999999999


Q ss_pred             CceEEcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895          158 VSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       158 ~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~G-ag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~  236 (246)
                      +.++++|+++++++|+.+++++.|||+++ +..++++|++|||+| +|++|++++|+|+.+|+ +|+++. +++++++++
T Consensus       117 ~~~~~iP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga-~vi~~~-~~~~~~~~~  193 (321)
T 3tqh_A          117 DTIIQKLEKLSFLQAASLPTAGLTALQAL-NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGT-TVITTA-SKRNHAFLK  193 (321)
T ss_dssp             GGEEECCTTSCHHHHHHSHHHHHHHHHHH-HHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEE-CHHHHHHHH
T ss_pred             HHhccCCCCCCHHHHhhhhhHHHHHHHHH-HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEe-ccchHHHHH
Confidence            99999999999999999999999999988 889999999999997 59999999999999999 899886 566799999


Q ss_pred             hcCCCc
Q 025895          237 SCVSSS  242 (246)
Q Consensus       237 ~lg~~~  242 (246)
                      ++|++.
T Consensus       194 ~lGa~~  199 (321)
T 3tqh_A          194 ALGAEQ  199 (321)
T ss_dssp             HHTCSE
T ss_pred             HcCCCE
Confidence            999983

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=100.00  E-value=4.5e-38  Score=275.73  Aligned_cols=185  Identities=19%  Similarity=0.213  Sum_probs=172.5

Q ss_pred             cceeeeEeecCCCC---eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCC
Q 025895            8 ITCKAAVAWEPNKP---LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVT   83 (246)
Q Consensus         8 ~~~ka~~~~~~~~~---~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~   83 (246)
                      ++|||++++++++|   ++++|+|.|+|++|||+|||++++||++|++.+.|.++. ..+|.++|||++|+|+++|++++
T Consensus         3 ~~mka~~~~~~g~p~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~vG~~v~   82 (340)
T 3gms_A            3 LHGKLIQFHKFGNPKDVLQVEYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAHRIPLPNIPGYEGVGIVENVGAFVS   82 (340)
T ss_dssp             CEEEEEEESSCSCHHHHEEEEEEECCCCCTTEEEEEEEEEECCHHHHGGGGTTTTTTSCSSBCCCSCCEEEEEEECTTSC
T ss_pred             cccEEEEEecCCCchheEEEEecCCCCCCCCEEEEEEEEecCCHHHHHHhcCCCCCCCCCCCcCCcceEEEEEEeCCCCC
Confidence            68999999999998   999999999999999999999999999999999988754 47899999999999999999999


Q ss_pred             ccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEc
Q 025895           84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI  163 (246)
Q Consensus        84 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i  163 (246)
                      +|++||||+...                               .+|                  +|+||+++|.+.++++
T Consensus        83 ~~~vGdrV~~~~-------------------------------~~G------------------~~aey~~v~~~~~~~v  113 (340)
T 3gms_A           83 RELIGKRVLPLR-------------------------------GEG------------------TWQEYVKTSADFVVPI  113 (340)
T ss_dssp             GGGTTCEEEECS-------------------------------SSC------------------SSBSEEEEEGGGEEEC
T ss_pred             CCCCCCEEEecC-------------------------------CCc------------------cceeEEEcCHHHeEEC
Confidence            999999997432                               233                  9999999999999999


Q ss_pred             CCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       164 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      |+++++++|+.+++...|+|+++.+..+++++++|||+|+ |++|++++|+++.+|+ +|++++++++|++.++++|++.
T Consensus       114 P~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lga~~  192 (340)
T 3gms_A          114 PDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLRLGAAY  192 (340)
T ss_dssp             CTTSCHHHHTTSSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCSE
T ss_pred             CCCCCHHHHhhhcchHHHHHHHHHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhCCCcE
Confidence            9999999999999999999999888999999999999998 5999999999999999 9999999999999999999983

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=100.00  E-value=6.5e-38  Score=277.19  Aligned_cols=192  Identities=20%  Similarity=0.220  Sum_probs=170.1

Q ss_pred             CCcccceeeeEeecC---CC--CeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEc
Q 025895            4 EGQVITCKAAVAWEP---NK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESV   78 (246)
Q Consensus         4 ~~~~~~~ka~~~~~~---~~--~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~v   78 (246)
                      +..|++|||++++++   ++  .++++|+|.|+|++|||+|||.+++||++|++.+.+.++...+|.++|||++|+|+++
T Consensus        17 ~~~m~~MkA~~~~~~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~v   96 (363)
T 4dvj_A           17 NLYFQSMKAVGYNKPAPITDDASLLDIELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTPPDGTDWKVIGYDAAGIVSAV   96 (363)
T ss_dssp             --CCCEEEEEEBSSCCCTTSTTSSEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHHCCC--CCSBCCCCCEEEEEEEE
T ss_pred             hhhhheeEEEEEeccCCCCCCceEEEeecCCCCCCCCEEEEEEEEEEeCHHHHHHHcCCCCCCCCCCcccceeEEEEEEe
Confidence            356789999999876   22  2999999999999999999999999999999999988776678999999999999999


Q ss_pred             CCCCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecC
Q 025895           79 GEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV  158 (246)
Q Consensus        79 G~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  158 (246)
                      |+++++|++||||+..+...                            .+|                  +|+||+++|.+
T Consensus        97 G~~v~~~~vGdrV~~~~~~~----------------------------~~G------------------~~aey~~v~~~  130 (363)
T 4dvj_A           97 GPDVTLFRPGDEVFYAGSII----------------------------RPG------------------TNAEFHLVDER  130 (363)
T ss_dssp             CTTCCSCCTTCEEEECCCTT----------------------------SCC------------------SCBSEEEEEGG
T ss_pred             CCCCCCCCCCCEEEEccCCC----------------------------CCc------------------cceEEEEeCHH
Confidence            99999999999998543100                            233                  99999999999


Q ss_pred             ceEEcCCCCCchhhhhccccchhhhhhhhhhCCCC-----CCCEEEEECC-CHHHHHHHHHHHHc-CCCeEEEEcCChhH
Q 025895          159 SVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVE-----PGSIVAVFGL-GTVGLAVAEGAKAA-GASRVIGIDIDPKK  231 (246)
Q Consensus       159 ~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~-----~~~~VlI~Ga-g~~G~~ai~~a~~~-G~~~vi~~~~~~~~  231 (246)
                      .++++|+++++++|+.+++++.|||+++.+..+++     ++++|||+|+ |++|++++|+|+.+ |+ +|++++++++|
T Consensus       131 ~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~-~Vi~~~~~~~~  209 (363)
T 4dvj_A          131 IVGRKPKTLDWAEAAALPLTSITAWEAFFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDL-TVIATASRPET  209 (363)
T ss_dssp             GCEECCTTSCHHHHHTSHHHHHHHHHHHHTTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCS-EEEEECSSHHH
T ss_pred             HeeECCCCCCHHHHHhhhhHHHHHHHHHHHhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCC-EEEEEeCCHHH
Confidence            99999999999999999999999999988888888     8999999985 99999999999985 77 99999999999


Q ss_pred             HHHHhhcCCCc
Q 025895          232 FDRGMSCVSSS  242 (246)
Q Consensus       232 ~~~~~~lg~~~  242 (246)
                      +++++++|++.
T Consensus       210 ~~~~~~lGad~  220 (363)
T 4dvj_A          210 QEWVKSLGAHH  220 (363)
T ss_dssp             HHHHHHTTCSE
T ss_pred             HHHHHHcCCCE
Confidence            99999999983

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=1.1e-37  Score=273.53  Aligned_cols=187  Identities=24%  Similarity=0.240  Sum_probs=172.9

Q ss_pred             CcccceeeeEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCC
Q 025895            5 GQVITCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEG   81 (246)
Q Consensus         5 ~~~~~~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~   81 (246)
                      +++.+|||+++.+++++  ++++|+|.|+|++|||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|++
T Consensus        17 ~~p~~MkA~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~   96 (342)
T 4eye_A           17 QGPGSMKAIQAQSLSGPEGLVYTDVETPGAGPNVVVVDVKAAGVCFPDYLMTKGEYQLKMEPPFVPGIETAGVVRSAPEG   96 (342)
T ss_dssp             -CCCEEEEEEECSSSGGGGEEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSSSCCCSSBCCCSEEEEEEEECCTT
T ss_pred             cCCcceEEEEEecCCCCceeEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCccceeEEEEEEEECCC
Confidence            45788999999997776  999999999999999999999999999999999987753 468999999999999999999


Q ss_pred             CCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceE
Q 025895           82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVA  161 (246)
Q Consensus        82 ~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  161 (246)
                      ++ |++||||+...                               .+|                  +|+||+.++.+.++
T Consensus        97 v~-~~vGDrV~~~~-------------------------------~~G------------------~~aey~~v~~~~~~  126 (342)
T 4eye_A           97 SG-IKPGDRVMAFN-------------------------------FIG------------------GYAERVAVAPSNIL  126 (342)
T ss_dssp             SS-CCTTCEEEEEC-------------------------------SSC------------------CSBSEEEECGGGEE
T ss_pred             CC-CCCCCEEEEec-------------------------------CCC------------------cceEEEEEcHHHeE
Confidence            99 99999998653                               233                  89999999999999


Q ss_pred             EcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCC
Q 025895          162 KIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVS  240 (246)
Q Consensus       162 ~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~  240 (246)
                      ++|+++++++|+.+++++.|||+++.+..+++++++|||+|+ |++|++++|+++.+|+ +|++++++++|+++++++|+
T Consensus       127 ~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga  205 (342)
T 4eye_A          127 PTPPQLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKSVGA  205 (342)
T ss_dssp             ECCTTSCHHHHHHHTTHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTC
T ss_pred             ECCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCC
Confidence            999999999999999999999999888899999999999998 9999999999999999 99999999999999999999


Q ss_pred             Cc
Q 025895          241 SS  242 (246)
Q Consensus       241 ~~  242 (246)
                      +.
T Consensus       206 ~~  207 (342)
T 4eye_A          206 DI  207 (342)
T ss_dssp             SE
T ss_pred             cE
Confidence            84

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=100.00  E-value=8.6e-38  Score=272.34  Aligned_cols=184  Identities=27%  Similarity=0.313  Sum_probs=171.7

Q ss_pred             eeeeEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCC
Q 025895           10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP   87 (246)
Q Consensus        10 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~   87 (246)
                      |||+++++++++  ++++|+|.|+|++|||+|||++++||++|++++.|.++...+|.++|||++|+|+++|+++++|++
T Consensus         2 MkA~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~G~e~~G~V~~vG~~v~~~~~   81 (325)
T 3jyn_A            2 AKRIQFSTVGGPEVLEYVDFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPAPFLPSGLGAEGAGVVEAVGDEVTRFKV   81 (325)
T ss_dssp             EEEEEBSSCSSGGGCEEEEECCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCSSSSBCCCCCEEEEEEEECTTCCSCCT
T ss_pred             cEEEEEecCCCcceeEEeecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCceeEEEEEEECCCCCCCCC
Confidence            899999998887  999999999999999999999999999999999998776678999999999999999999999999


Q ss_pred             CCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCC
Q 025895           88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA  167 (246)
Q Consensus        88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~  167 (246)
                      ||||.....                              .+|                  +|+||+.+|.+.++++|+++
T Consensus        82 GdrV~~~~~------------------------------~~G------------------~~aey~~v~~~~~~~~P~~~  113 (325)
T 3jyn_A           82 GDRVAYGTG------------------------------PLG------------------AYSEVHVLPEANLVKLADSV  113 (325)
T ss_dssp             TCEEEESSS------------------------------SSC------------------CSBSEEEEEGGGEEECCTTS
T ss_pred             CCEEEEecC------------------------------CCc------------------cccceEEecHHHeEECCCCC
Confidence            999985421                              233                  99999999999999999999


Q ss_pred             CchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      ++++|+.+++...|+|+++.+..+++++++|||+|+ |++|++++|+++.+|+ +|++++++++|++.++++|++.
T Consensus       114 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~Ga~~  188 (325)
T 3jyn_A          114 SFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKALGAWE  188 (325)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSE
T ss_pred             CHHHHhhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCE
Confidence            999999999999999999888889999999999995 9999999999999999 9999999999999999999984

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=100.00  E-value=2.6e-37  Score=271.53  Aligned_cols=186  Identities=22%  Similarity=0.245  Sum_probs=168.4

Q ss_pred             cceeeeEeecCC-----CCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCC
Q 025895            8 ITCKAAVAWEPN-----KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGV   82 (246)
Q Consensus         8 ~~~ka~~~~~~~-----~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~   82 (246)
                      |+|||++++++|     +.++++|+|.|+|++|||+|||++++||++|++.+.+.  ...+|.++|||++|+|+++|+++
T Consensus         1 m~MkA~~~~~~G~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~--~~~~p~i~G~e~~G~V~~vG~~v   78 (346)
T 3fbg_A            1 MSLKAIGFEQPFKLSDGNLFKTFNLDIPEPKVHEILVKIQSISVNPVDTKQRLMD--VSKAPRVLGFDAIGVVESVGNEV   78 (346)
T ss_dssp             -CEEEEEBSSCCCGGGCCCCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHTTSC--CSSSCBCCCCCEEEEEEEECTTC
T ss_pred             CCcEEEEEEeccccCCCceeEeccccCCCCCCCEEEEEEEEEEcCHHHHHHHhCC--CCCCCcCcCCccEEEEEEeCCCC
Confidence            579999999876     34999999999999999999999999999999988876  34678999999999999999999


Q ss_pred             CccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEE
Q 025895           83 TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAK  162 (246)
Q Consensus        83 ~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  162 (246)
                      ++|++||||+.....                            ..+|                  +|+||+++|.+.+++
T Consensus        79 ~~~~~GdrV~~~~~~----------------------------~~~G------------------~~aey~~v~~~~~~~  112 (346)
T 3fbg_A           79 TMFNQGDIVYYSGSP----------------------------DQNG------------------SNAEYQLINERLVAK  112 (346)
T ss_dssp             CSCCTTCEEEECCCT----------------------------TSCC------------------SSBSEEEEEGGGEEE
T ss_pred             CcCCCCCEEEEcCCC----------------------------CCCc------------------ceeEEEEEChHHeEE
Confidence            999999999854210                            0233                  999999999999999


Q ss_pred             cCCCCCchhhhhccccchhhhhhhhhhCCCC------CCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          163 IDPQAPLDKVCLLGCGVPTGLGAVWNTAKVE------PGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       163 ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~------~~~~VlI~G-ag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      +|+++++++|+.+++++.|||+++.+..+++      ++++|||+| +|++|++++|+|+.+|+ +|++++++++|++++
T Consensus       113 iP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~  191 (346)
T 3fbg_A          113 APKNISAEQAVSLPLTGITAYETLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWT  191 (346)
T ss_dssp             CCSSSCHHHHTTSHHHHHHHHHHHHTTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHHHH
T ss_pred             CCCCCCHHHhhhcchhHHHHHHHHHHhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            9999999999999999999999988888888      999999995 59999999999999999 999999999999999


Q ss_pred             hhcCCCc
Q 025895          236 MSCVSSS  242 (246)
Q Consensus       236 ~~lg~~~  242 (246)
                      +++|++.
T Consensus       192 ~~lGa~~  198 (346)
T 3fbg_A          192 KKMGADI  198 (346)
T ss_dssp             HHHTCSE
T ss_pred             HhcCCcE
Confidence            9999983

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=100.00  E-value=2.6e-37  Score=270.17  Aligned_cols=186  Identities=26%  Similarity=0.279  Sum_probs=171.2

Q ss_pred             CcccceeeeEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCC
Q 025895            5 GQVITCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGV   82 (246)
Q Consensus         5 ~~~~~~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~   82 (246)
                      +.+.+|||+++++++++  ++++|+|.|+|++|||+|||.+++||++|++++.|.++. .+|.++|||++|+|+++|+++
T Consensus         4 ~~p~~mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~-~~P~i~G~e~~G~V~~vG~~v   82 (334)
T 3qwb_A            4 TIPEQQKVILIDEIGGYDVIKYEDYPVPSISEEELLIKNKYTGVNYIESYFRKGIYPC-EKPYVLGREASGTVVAKGKGV   82 (334)
T ss_dssp             -CCSEEEEEEESSSSSGGGEEEEEEECCCCCTTEEEEEEEEEECCTTHHHHHHTSSCC-CSSEECCSEEEEEEEEECTTC
T ss_pred             CCchheEEEEEecCCCCceeEEEeccCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCC-CCCCccccceEEEEEEECCCC
Confidence            45788999999998876  899999999999999999999999999999999987653 579999999999999999999


Q ss_pred             CccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEee-cCceE
Q 025895           83 TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH-DVSVA  161 (246)
Q Consensus        83 ~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~  161 (246)
                      ++|++||||+..                                .+|                  +|+||+.++ .+.++
T Consensus        83 ~~~~~GdrV~~~--------------------------------~~G------------------~~aey~~v~~~~~~~  112 (334)
T 3qwb_A           83 TNFEVGDQVAYI--------------------------------SNS------------------TFAQYSKISSQGPVM  112 (334)
T ss_dssp             CSCCTTCEEEEE--------------------------------CSS------------------CSBSEEEEETTSSEE
T ss_pred             CCCCCCCEEEEe--------------------------------eCC------------------cceEEEEecCcceEE
Confidence            999999999854                                223                  899999999 99999


Q ss_pred             EcCCCCCchh---hhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          162 KIDPQAPLDK---VCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       162 ~ip~~~~~~~---aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      ++|+++++++   ++.+++...|+|+++.+..+++++++|||+|+ |++|++++|+++.+|+ +|++++++++|++++++
T Consensus       113 ~~P~~~~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~  191 (334)
T 3qwb_A          113 KLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKLKIAKE  191 (334)
T ss_dssp             ECCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH
T ss_pred             ECCCCCCHHHhhhhhhhhhHHHHHHHHHHHhccCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            9999999999   88888899999998878889999999999995 9999999999999999 99999999999999999


Q ss_pred             cCCCc
Q 025895          238 CVSSS  242 (246)
Q Consensus       238 lg~~~  242 (246)
                      +|++.
T Consensus       192 ~ga~~  196 (334)
T 3qwb_A          192 YGAEY  196 (334)
T ss_dssp             TTCSE
T ss_pred             cCCcE
Confidence            99983

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=100.00  E-value=7.6e-37  Score=271.07  Aligned_cols=195  Identities=21%  Similarity=0.177  Sum_probs=164.2

Q ss_pred             CCCCC--cccceeeeEeecCCCCeEEE-EeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEE
Q 025895            1 MSTEG--QVITCKAAVAWEPNKPLVIE-DVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVES   77 (246)
Q Consensus         1 m~~~~--~~~~~ka~~~~~~~~~~~~~-e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~   77 (246)
                      |++.+  ++.+|||++++++++ ++++ |+|.|+|++|||+|||++++||++|++++.+.   ..+|.++|||++|+|++
T Consensus         1 ~~~~tm~~p~~mkA~v~~~~~~-l~~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~---~~~p~v~G~e~~G~V~~   76 (371)
T 3gqv_A            1 MGDQPFIPPPQQTALTVNDHDE-VTVWNAAPCPMLPRDQVYVRVEAVAINPSDTSMRGQF---ATPWAFLGTDYAGTVVA   76 (371)
T ss_dssp             ---CCCCCCSCEEEEEECTTSC-EEEEEEECCCCCCTTSEEEEEEEEECCGGGGC--------CCTTSCCCSEEEEEEEE
T ss_pred             CCCCCCCCchhceeEEEcCCCc-eEEeccCCCCCCCCCEEEEEEEEEEcCHHHHHHhhcC---CCCCccCccccEEEEEE
Confidence            55543  457899999999977 9999 99999999999999999999999999988663   34689999999999999


Q ss_pred             cCCCCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeec
Q 025895           78 VGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD  157 (246)
Q Consensus        78 vG~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~  157 (246)
                      +|+++++|++||||+..       |..|..+.               . .+|                  +|+||+++|.
T Consensus        77 vG~~v~~~~~GdrV~~~-------~~~~~~~~---------------~-~~G------------------~~aey~~v~~  115 (371)
T 3gqv_A           77 VGSDVTHIQVGDRVYGA-------QNEMCPRT---------------P-DQG------------------AFSQYTVTRG  115 (371)
T ss_dssp             ECTTCCSCCTTCEEEEE-------CCTTCTTC---------------T-TCC------------------SSBSEEECCT
T ss_pred             eCCCCCCCCCCCEEEEe-------ccCCCCCC---------------C-CCC------------------cCcCeEEEch
Confidence            99999999999999644       33332210               0 233                  9999999999


Q ss_pred             CceEEcCCCCCchhhhhccccchhhhhhhhhh-CCC-----------CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEE
Q 025895          158 VSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT-AKV-----------EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIG  224 (246)
Q Consensus       158 ~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~-~~~-----------~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~  224 (246)
                      +.++++|+++++++|+.+++++.|||+++.+. .++           +++++|||+|+ |++|++++|+|+.+|+ +|++
T Consensus       116 ~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~Ga-~Vi~  194 (371)
T 3gqv_A          116 RVWAKIPKGLSFEQAAALPAGISTAGLAMKLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGY-IPIA  194 (371)
T ss_dssp             TCEEECCTTCCHHHHHTSHHHHHHHHHHHHHHTCCCCCSSCSSCCCCSSCCEEEEESTTSHHHHHHHHHHHHTTC-EEEE
T ss_pred             hheEECCCCCCHHHHhhhhhhHHHHHHHHHhhccCCCCCccccccccCCCcEEEEECCCcHHHHHHHHHHHHCCC-EEEE
Confidence            99999999999999999999999999988776 443           89999999998 8999999999999999 8998


Q ss_pred             EcCChhHHHHHhhcCCCc
Q 025895          225 IDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       225 ~~~~~~~~~~~~~lg~~~  242 (246)
                      +. +++|+++++++|++.
T Consensus       195 ~~-~~~~~~~~~~lGa~~  211 (371)
T 3gqv_A          195 TC-SPHNFDLAKSRGAEE  211 (371)
T ss_dssp             EE-CGGGHHHHHHTTCSE
T ss_pred             Ee-CHHHHHHHHHcCCcE
Confidence            85 799999999999983

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.3e-36  Score=267.63  Aligned_cols=187  Identities=25%  Similarity=0.365  Sum_probs=169.7

Q ss_pred             ccceeeeEeecCCCC--eEE-EEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCC
Q 025895            7 VITCKAAVAWEPNKP--LVI-EDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGV   82 (246)
Q Consensus         7 ~~~~ka~~~~~~~~~--~~~-~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~   82 (246)
                      +.+|||+++.+++++  +++ +|+|.|+|++|||+|||.+++||++|++++.|.++. ..+|.++|||++|+|+++|+++
T Consensus        27 ~~~Mka~~~~~~g~~~~l~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~v~G~E~~G~V~~vG~~v  106 (351)
T 1yb5_A           27 QKLMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNA  106 (351)
T ss_dssp             -CEEEEEEESSCSSGGGEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSBCCCSCEEEEEEEECTTC
T ss_pred             cceEEEEEEccCCCcceeEEeeecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCcCCceeEEEEEEECCCC
Confidence            356999999987765  888 899999999999999999999999999999887642 4679999999999999999999


Q ss_pred             CccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEE
Q 025895           83 TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAK  162 (246)
Q Consensus        83 ~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  162 (246)
                      ++|++||||+..+.                              .+|                  +|+||+++|.+.+++
T Consensus       107 ~~~~vGdrV~~~~~------------------------------~~G------------------~~aey~~v~~~~~~~  138 (351)
T 1yb5_A          107 SAFKKGDRVFTSST------------------------------ISG------------------GYAEYALAADHTVYK  138 (351)
T ss_dssp             TTCCTTCEEEESCC------------------------------SSC------------------SSBSEEEEEGGGEEE
T ss_pred             CCCCCCCEEEEeCC------------------------------CCC------------------cceeEEEECHHHeEE
Confidence            99999999985431                              123                  999999999999999


Q ss_pred             cCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          163 IDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       163 ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      +|+++++++|+.+++++.|||+++.+..+++++++|||+|+ |++|++++|+++..|+ +|+++++++++++.++++|++
T Consensus       139 ~P~~l~~~~aA~l~~~~~ta~~al~~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~  217 (351)
T 1yb5_A          139 LPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQNGAH  217 (351)
T ss_dssp             CCTTSCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCS
T ss_pred             CCCCCCHHHHHhhhhHHHHHHHHHHHhhCCCCcCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHcCCC
Confidence            99999999999999999999999877889999999999998 9999999999999999 899999999999999999987


Q ss_pred             c
Q 025895          242 S  242 (246)
Q Consensus       242 ~  242 (246)
                      .
T Consensus       218 ~  218 (351)
T 1yb5_A          218 E  218 (351)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=100.00  E-value=6.7e-37  Score=270.02  Aligned_cols=189  Identities=25%  Similarity=0.333  Sum_probs=167.3

Q ss_pred             CcccceeeeEeecCCCC---eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCC
Q 025895            5 GQVITCKAAVAWEPNKP---LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGE   80 (246)
Q Consensus         5 ~~~~~~ka~~~~~~~~~---~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~   80 (246)
                      .++.+|||+++.+++++   ++++|+|.|+|++|||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|+
T Consensus        22 ~m~~~mka~~~~~~g~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~v~G~E~~G~V~~vG~  101 (357)
T 1zsy_A           22 SMPARVRALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPELPAVGGNEGVAQVVAVGS  101 (357)
T ss_dssp             CCCCCEEEEEESSSSCHHHHEEEEEECCCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSEECCSCCEEEEEEECT
T ss_pred             hCchhhEEEEEecCCCccceEEEeeccCCCCCCCEEEEEEEECCCCHHHhhHhcCCCCCCCCCCccccceEEEEEEEeCC
Confidence            34577999999999986   889999999999999999999999999999999987654 25799999999999999999


Q ss_pred             CCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCce
Q 025895           81 GVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSV  160 (246)
Q Consensus        81 ~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  160 (246)
                      ++++|++||||+..+.                              .+                  |+|+||+++|.+.+
T Consensus       102 ~v~~~~vGdrV~~~~~------------------------------~~------------------G~~aey~~v~~~~~  133 (357)
T 1zsy_A          102 NVTGLKPGDWVIPANA------------------------------GL------------------GTWRTEAVFSEEAL  133 (357)
T ss_dssp             TCCSCCTTCEEEESSS------------------------------CS------------------CCSBSEEEEEGGGE
T ss_pred             CCCCCCCCCEEEEcCC------------------------------CC------------------ccceeEEecCHHHc
Confidence            9999999999986431                              12                  39999999999999


Q ss_pred             EEcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCh----hHHHHH
Q 025895          161 AKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP----KKFDRG  235 (246)
Q Consensus       161 ~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~----~~~~~~  235 (246)
                      +++|+++++++|+.+++++.|||+++.+..++++|++|||+|+ |++|++++|+||.+|+ ++|++.+++    ++++++
T Consensus       134 ~~iP~~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~~  212 (357)
T 1zsy_A          134 IQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGL-RTINVVRDRPDIQKLSDRL  212 (357)
T ss_dssp             EEECSSSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEECCCSCHHHHHHHH
T ss_pred             EECCCCCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCC-EEEEEecCccchHHHHHHH
Confidence            9999999999999999889999998878889999999999998 9999999999999999 666665443    367889


Q ss_pred             hhcCCCc
Q 025895          236 MSCVSSS  242 (246)
Q Consensus       236 ~~lg~~~  242 (246)
                      +++|++.
T Consensus       213 ~~lGa~~  219 (357)
T 1zsy_A          213 KSLGAEH  219 (357)
T ss_dssp             HHTTCSE
T ss_pred             HhcCCcE
Confidence            9999983

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=100.00  E-value=1.4e-36  Score=267.69  Aligned_cols=188  Identities=22%  Similarity=0.225  Sum_probs=169.1

Q ss_pred             CcccceeeeEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCC-CCCcccccceEEEEEEcCCC
Q 025895            5 GQVITCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPCILGHEAAGIVESVGEG   81 (246)
Q Consensus         5 ~~~~~~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~-~~p~v~G~e~vG~V~~vG~~   81 (246)
                      ..+.+|||+++.+++++  ++++|+|.|+|++|||+|||.+++||++|++++.|.++.. .+|.++|||++|+|+++|++
T Consensus        18 ~~~~~Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~p~v~G~E~~G~V~~vG~~   97 (354)
T 2j8z_A           18 LYFQSMLAVHFDKPGGPENLYVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDPPPGASNILGLEASGHVAELGPG   97 (354)
T ss_dssp             ---CEEEEEEESSCSSGGGEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCCTTSCSSSCSEEEEEEEEECSC
T ss_pred             cchhheeEEEEccCCCccceEEeecCCCCCCCCeEEEEEEEeecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEECCC
Confidence            55788999999998864  8999999999999999999999999999999998876532 47899999999999999999


Q ss_pred             C-CccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCce
Q 025895           82 V-TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSV  160 (246)
Q Consensus        82 ~-~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  160 (246)
                      + ++|++||||+...                               .+|                  +|+||+++|.+.+
T Consensus        98 v~~~~~vGdrV~~~~-------------------------------~~G------------------~~aey~~v~~~~~  128 (354)
T 2j8z_A           98 CQGHWKIGDTAMALL-------------------------------PGG------------------GQAQYVTVPEGLL  128 (354)
T ss_dssp             C--CCCTTCEEEEEC-------------------------------SSC------------------CSBSEEEEEGGGE
T ss_pred             cCCCCCCCCEEEEec-------------------------------CCC------------------cceeEEEeCHHHc
Confidence            9 9999999998542                               123                  8999999999999


Q ss_pred             EEcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcC
Q 025895          161 AKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCV  239 (246)
Q Consensus       161 ~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg  239 (246)
                      +++|+++++++|+.+++++.|||+++.+..+++++++|||+|+ |++|++++|+++..|+ +|+++++++++++.++++|
T Consensus       129 ~~iP~~ls~~~aa~l~~~~~tA~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~g  207 (354)
T 2j8z_A          129 MPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMAEKLG  207 (354)
T ss_dssp             EECCTTCCHHHHTTSHHHHHHHHHHHTTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHT
T ss_pred             EECCCCCCHHHHHhccchHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcC
Confidence            9999999999999999999999999878899999999999986 9999999999999999 9999999999999999999


Q ss_pred             CCc
Q 025895          240 SSS  242 (246)
Q Consensus       240 ~~~  242 (246)
                      ++.
T Consensus       208 ~~~  210 (354)
T 2j8z_A          208 AAA  210 (354)
T ss_dssp             CSE
T ss_pred             CcE
Confidence            873

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=100.00  E-value=2.8e-37  Score=271.61  Aligned_cols=193  Identities=15%  Similarity=0.111  Sum_probs=164.6

Q ss_pred             CCCCCcccceeeeEee--c---CCCCeEEEEe---------ecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCc
Q 025895            1 MSTEGQVITCKAAVAW--E---PNKPLVIEDV---------QVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPC   65 (246)
Q Consensus         1 m~~~~~~~~~ka~~~~--~---~~~~~~~~e~---------~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~   65 (246)
                      |++.+++.+|||++++  +   ..+.++++|+         |.|+|++|||+|||++++||++|++.+.|.++. ..+|.
T Consensus         2 Ms~m~~p~~mka~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~p~   81 (349)
T 3pi7_A            2 MSPMTIPSEMKALLLVGDGYTKTPSGSALEAMEPYLEQGRIAVPAPGPSQVLIKVNLASINPSDVAFIKGQYGQPRVKGR   81 (349)
T ss_dssp             ---CCCCSEEEEEEECSCBSCSSCCCSCCCCSTTTEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSSCBCTTS
T ss_pred             CCCCCCchhheEEEEEccccCCCcccceEEEeecccccccCCCCCCCCCeEEEEEEEecCCHHHHHHhcccCCCCCCCCC
Confidence            8887888999999999  2   3334888888         999999999999999999999999999987653 36899


Q ss_pred             ccccceEEEEEEcCCCC-CccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeecc
Q 025895           66 ILGHEAAGIVESVGEGV-TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFM  144 (246)
Q Consensus        66 v~G~e~vG~V~~vG~~~-~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~  144 (246)
                      ++|||++|+|+++|+++ ++|++||||+.....                           . .+                
T Consensus        82 v~G~E~~G~V~~vG~~v~~~~~vGdrV~~~~g~---------------------------~-~~----------------  117 (349)
T 3pi7_A           82 PAGFEGVGTIVAGGDEPYAKSLVGKRVAFATGL---------------------------S-NW----------------  117 (349)
T ss_dssp             BCCSEEEEEEEEECSSHHHHHHTTCEEEEECTT---------------------------S-SC----------------
T ss_pred             CccceEEEEEEEECCCccCCCCCCCEEEEeccC---------------------------C-CC----------------
Confidence            99999999999999999 999999999865320                           0 23                


Q ss_pred             CCcceeeeEEeecCceEEcCCCCCchhhhhccccchhhhhhhhhhCCCCCC-CEEEEECC-CHHHHHHHHHHHHcCCCeE
Q 025895          145 GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPG-SIVAVFGL-GTVGLAVAEGAKAAGASRV  222 (246)
Q Consensus       145 ~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~-~~VlI~Ga-g~~G~~ai~~a~~~G~~~v  222 (246)
                        |+|+||+++|.+.++++|+++++++|+.+++...|||+ +.+..+ +++ ++|||+|+ |++|++++|+|+.+|+ +|
T Consensus       118 --G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~-~~~~~~-~~g~~~vli~gg~g~vG~~a~qla~~~Ga-~V  192 (349)
T 3pi7_A          118 --GSWAEYAVAEAAACIPLLDTVRDEDGAAMIVNPLTAIA-MFDIVK-QEGEKAFVMTAGASQLCKLIIGLAKEEGF-RP  192 (349)
T ss_dssp             --CSSBSEEEEEGGGEEECCTTCCC--GGGSSHHHHHHHH-HHHHHH-HHCCSEEEESSTTSHHHHHHHHHHHHHTC-EE
T ss_pred             --ccceeeEeechHHeEECCCCCCHHHHhhccccHHHHHH-HHHHHh-hCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EE
Confidence              39999999999999999999999999999999999996 445566 666 68888855 9999999999999999 99


Q ss_pred             EEEcCChhHHHHHhhcCCCc
Q 025895          223 IGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       223 i~~~~~~~~~~~~~~lg~~~  242 (246)
                      ++++++++|+++++++|++.
T Consensus       193 i~~~~~~~~~~~~~~~Ga~~  212 (349)
T 3pi7_A          193 IVTVRRDEQIALLKDIGAAH  212 (349)
T ss_dssp             EEEESCGGGHHHHHHHTCSE
T ss_pred             EEEeCCHHHHHHHHHcCCCE
Confidence            99999999999999999983

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=100.00  E-value=1.8e-36  Score=267.63  Aligned_cols=187  Identities=20%  Similarity=0.193  Sum_probs=166.2

Q ss_pred             ccceeeeEeecCCCC---eEEEEeecCCCC--CCeEEEEEeeeecchhhhhhhcCCCCC-CCCC---------cccccce
Q 025895            7 VITCKAAVAWEPNKP---LVIEDVQVAPPQ--AGEVRIKILFTALCHTDAYTWSGKDPE-GLFP---------CILGHEA   71 (246)
Q Consensus         7 ~~~~ka~~~~~~~~~---~~~~e~~~p~~~--~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p---------~v~G~e~   71 (246)
                      |++|||+++++++++   ++++|+|.|.|+  +|||+|||.+++||++|++++.|.++. ..+|         .++|||+
T Consensus         1 ~~~mka~~~~~~g~~~~~l~~~~~~~P~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~~~~~~~p~~i~G~E~   80 (364)
T 1gu7_A            1 MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEG   80 (364)
T ss_dssp             CEEEEEEEESSCSCHHHHCEEEEEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCC
T ss_pred             CceEEEEEeccCCCchheeEEeeccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCCCCCCccccccCcccccCcee
Confidence            578999999999976   899999999887  999999999999999999999887653 3466         8999999


Q ss_pred             EEEEEEcCCCCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceee
Q 025895           72 AGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQ  151 (246)
Q Consensus        72 vG~V~~vG~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~  151 (246)
                      +|+|+++|+++++|++||||+..+.                              .+                  |+|+|
T Consensus        81 ~G~V~~vG~~v~~~~vGdrV~~~~~------------------------------~~------------------G~~ae  112 (364)
T 1gu7_A           81 LFEVIKVGSNVSSLEAGDWVIPSHV------------------------------NF------------------GTWRT  112 (364)
T ss_dssp             EEEEEEECTTCCSCCTTCEEEESSS------------------------------CC------------------CCSBS
T ss_pred             EEEEEEeCCCCCcCCCCCEEEecCC------------------------------CC------------------Ccchh
Confidence            9999999999999999999986531                              12                  39999


Q ss_pred             eEEeecCceEEcCC-----------CCCchhhhhccccchhhhhhhhhhCCCCCC-CEEEEECC-CHHHHHHHHHHHHcC
Q 025895          152 YTVVHDVSVAKIDP-----------QAPLDKVCLLGCGVPTGLGAVWNTAKVEPG-SIVAVFGL-GTVGLAVAEGAKAAG  218 (246)
Q Consensus       152 ~~~~~~~~~~~ip~-----------~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~-~~VlI~Ga-g~~G~~ai~~a~~~G  218 (246)
                      |+++|.+.++++|+           ++++++|+.+++++.|||+++.+..++++| ++|||+|+ |++|++++|+|+.+|
T Consensus       113 y~~v~~~~~~~~P~~~~~~~~~~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~G  192 (364)
T 1gu7_A          113 HALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLN  192 (364)
T ss_dssp             EEEEEGGGEEEECCHHHHHHTTCSCCCCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHT
T ss_pred             eEecCHHHeEEcCCccccccccccCCCCHHHHhhccccHHHHHHHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHHHCC
Confidence            99999999999998           899999999999999999988776789999 99999998 999999999999999


Q ss_pred             CCeEEEEcCChhH----HHHHhhcCCCc
Q 025895          219 ASRVIGIDIDPKK----FDRGMSCVSSS  242 (246)
Q Consensus       219 ~~~vi~~~~~~~~----~~~~~~lg~~~  242 (246)
                      + ++|++.+++++    +++++++|++.
T Consensus       193 a-~vi~~~~~~~~~~~~~~~~~~lGa~~  219 (364)
T 1gu7_A          193 F-NSISVIRDRPNLDEVVASLKELGATQ  219 (364)
T ss_dssp             C-EEEEEECCCTTHHHHHHHHHHHTCSE
T ss_pred             C-EEEEEecCccccHHHHHHHHhcCCeE
Confidence            9 88888766554    67889999983

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=100.00  E-value=3.3e-36  Score=264.84  Aligned_cols=184  Identities=22%  Similarity=0.257  Sum_probs=167.5

Q ss_pred             cceeeeEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCCc
Q 025895            8 ITCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTE   84 (246)
Q Consensus         8 ~~~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~~   84 (246)
                      ++|||+++++++++  ++++|.|.|+|++|||+|||++++||++|++.+.|.++. ..+|.++|||++|+|+++|+++++
T Consensus         2 m~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~~   81 (349)
T 4a27_A            2 MEMRAVVLAGFGGLNKLRLFRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLVPGFECSGIVEALGDSVKG   81 (349)
T ss_dssp             CCEEEEEECSSSSGGGEEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSEEEEEEEEECTTCCS
T ss_pred             ceeEEEEEccCCCcceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCcCCCCCCCccccceeEEEEEEeCCCCCC
Confidence            68999999999864  999999999999999999999999999999999998653 478999999999999999999999


Q ss_pred             cCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcC
Q 025895           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (246)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip  164 (246)
                      |++||||+...                               .+|                  +|+||+.+|.+.++++|
T Consensus        82 ~~~GdrV~~~~-------------------------------~~G------------------~~aey~~v~~~~~~~iP  112 (349)
T 4a27_A           82 YEIGDRVMAFV-------------------------------NYN------------------AWAEVVCTPVEFVYKIP  112 (349)
T ss_dssp             CCTTCEEEEEC-------------------------------SSC------------------CSBSEEEEEGGGEEECC
T ss_pred             CCCCCEEEEec-------------------------------CCC------------------cceEEEEecHHHeEECC
Confidence            99999998553                               223                  89999999999999999


Q ss_pred             CCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      +++++++|+.+++++.|||+++.+..+++++++|||+|+ |++|++++|+|+.+|..+|++++ +++|++.++ +|++.
T Consensus       113 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~-~ga~~  189 (349)
T 4a27_A          113 DDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK-DSVTH  189 (349)
T ss_dssp             TTSCHHHHHTSHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG-GGSSE
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH-cCCcE
Confidence            999999999999999999999888899999999999998 99999999999999755888886 677888888 99874

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=100.00  E-value=3.2e-36  Score=262.03  Aligned_cols=187  Identities=18%  Similarity=0.197  Sum_probs=164.2

Q ss_pred             eeeeEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCCccC
Q 025895           10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ   86 (246)
Q Consensus        10 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~~~~   86 (246)
                      |||+++++++++  ++++|+|.|+|++|||+|||++++||++|++.+.|.++. ..+|.++|||++|+|+++|  +++|+
T Consensus         1 MkA~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~~G--v~~~~   78 (324)
T 3nx4_A            1 MQALILEQQDGKTLASVQHLEESQLPAGDVTVDVHWSSLNYKDALAITGKGKIIRHFPMIPGIDFAGTVHASE--DPRFH   78 (324)
T ss_dssp             CEEEEEEESSSSEEEEEEECCGGGSCCCSEEEEEEEEEECHHHHHHHHTCTTCCCSSSBCCCSEEEEEEEEES--STTCC
T ss_pred             CceEEEecCCCCceeeEeecCCCCCCCCEEEEEEEEEeCCHHHHhhhcCCCCCCCCCCccccceeEEEEEEeC--CCCCC
Confidence            899999999986  899999999999999999999999999999999987754 4789999999999999998  57899


Q ss_pred             CCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCC
Q 025895           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (246)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~  166 (246)
                      +||||++.+.   .                     .|.. .+                  |+|+||+.+|.+.++++|++
T Consensus        79 vGdrV~~~~~---~---------------------~g~~-~~------------------G~~aey~~v~~~~~~~iP~~  115 (324)
T 3nx4_A           79 AGQEVLLTGW---G---------------------VGEN-HW------------------GGLAERARVKGDWLVALPAG  115 (324)
T ss_dssp             TTCEEEEECT---T---------------------BTTT-BC------------------CSSBSEEEECGGGCEECCTT
T ss_pred             CCCEEEEccc---c---------------------cCCC-CC------------------CceeeEEecCHHHcEECCCC
Confidence            9999987641   0                     1111 23                  39999999999999999999


Q ss_pred             CCchhhhhccccchhhhhhhh--hhCCCCCCC-EEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          167 APLDKVCLLGCGVPTGLGAVW--NTAKVEPGS-IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~l~--~~~~~~~~~-~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      +++++|+.+++.+.|||.++.  ...++++++ +|||+|+ |++|++++|+|+.+|+ +|++++++++|+++++++|++.
T Consensus       116 ~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~g~VlV~Ga~G~vG~~aiqla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~  194 (324)
T 3nx4_A          116 LSSRNAMIIGTAGFTAMLCVMALEDAGIRPQDGEVVVTGASGGVGSTAVALLHKLGY-QVAAVSGRESTHGYLKSLGANR  194 (324)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTCSE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHhhhcccCCCCCeEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCCE
Confidence            999999999999999998765  345566633 4999998 9999999999999999 9999999999999999999983

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=6.3e-36  Score=260.58  Aligned_cols=185  Identities=24%  Similarity=0.278  Sum_probs=167.3

Q ss_pred             ceeeeEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccC
Q 025895            9 TCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQ   86 (246)
Q Consensus         9 ~~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~   86 (246)
                      +|||+++++++.+  ++++|+|.|+|++|||+|||.+++||++|++.+.|.++...+|.++|||++|+|+++|+++++|+
T Consensus         1 ~Mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~   80 (327)
T 1qor_A            1 MATRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKVGSGVKHIK   80 (327)
T ss_dssp             -CEEEEBSSCCSGGGCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCSSSSBCCCSCEEEEEEEECTTCCSCC
T ss_pred             CcEEEEEcCCCChhheEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCCCceeEEEEEEECCCCCCCC
Confidence            3899999987765  89999999999999999999999999999999998765456899999999999999999999999


Q ss_pred             CCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCC
Q 025895           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (246)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~  166 (246)
                      +||||. ...    .                         .+|                  +|+||+.+|.+.++++|++
T Consensus        81 ~GdrV~-~~g----~-------------------------~~G------------------~~aey~~v~~~~~~~iP~~  112 (327)
T 1qor_A           81 AGDRVV-YAQ----S-------------------------ALG------------------AYSSVHNIIADKAAILPAA  112 (327)
T ss_dssp             TTCEEE-ESC----C-------------------------SSC------------------CSBSEEEEEGGGEEECCTT
T ss_pred             CCCEEE-ECC----C-------------------------CCc------------------eeeeEEEecHHHcEECCCC
Confidence            999994 310    0                         123                  8999999999999999999


Q ss_pred             CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      +++++|+.+++++.|||+++.+..+++++++|||+|+ |++|++++|+++..|+ +|+++++++++++.++++|++.
T Consensus       113 l~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~g~~~  188 (327)
T 1qor_A          113 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGAWQ  188 (327)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCE
Confidence            9999999999999999999877889999999999996 9999999999999999 9999999999999999999873

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=100.00  E-value=1.8e-35  Score=262.54  Aligned_cols=190  Identities=21%  Similarity=0.197  Sum_probs=167.1

Q ss_pred             CcccceeeeEeecCCCC--eEE-EEeecCCC-CCCeEEEEEeeeecchhhhhhhcCCCC-------------C--CCCCc
Q 025895            5 GQVITCKAAVAWEPNKP--LVI-EDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDP-------------E--GLFPC   65 (246)
Q Consensus         5 ~~~~~~ka~~~~~~~~~--~~~-~e~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~~~~~-------------~--~~~p~   65 (246)
                      .+..+|||+++.+++++  +++ +|+|.|.| ++|||+|||.+++||++|++++.|..+             .  ..+|.
T Consensus        17 ~~~~~mka~~~~~~g~~~~l~~~~~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~~~~~~~~~~~~~P~   96 (375)
T 2vn8_A           17 NLYFQSMAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKRDPLHVKIKGEEFPL   96 (375)
T ss_dssp             -CCCCEEEEEBSSCCSGGGCEEEEEECCCCCCSTTEEEEEEEEEEECHHHHHHHTTTTHHHHHHHHCTTCCSCTTTTCSB
T ss_pred             ccCccceeEEeccCCCccceEEeccccCCCCCCCCEEEEEEEEEEcCHHHHHHhccCccccccccccccccccccccCCc
Confidence            44578999999998764  888 99999985 999999999999999999999887531             1  23789


Q ss_pred             ccccceEEEEEEcCCCCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccC
Q 025895           66 ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMG  145 (246)
Q Consensus        66 v~G~e~vG~V~~vG~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~  145 (246)
                      ++|||++|+|+++|+++++|++||||+..+...                            .+                 
T Consensus        97 v~G~E~~G~V~~vG~~V~~~~vGDrV~~~~~~~----------------------------~~-----------------  131 (375)
T 2vn8_A           97 TLGRDVSGVVMECGLDVKYFKPGDEVWAAVPPW----------------------------KQ-----------------  131 (375)
T ss_dssp             CCCCEEEEEEEEECTTCCSCCTTCEEEEECCTT----------------------------SC-----------------
T ss_pred             ccceeeeEEEEEeCCCCCCCCCCCEEEEecCCC----------------------------CC-----------------
Confidence            999999999999999999999999998654200                            22                 


Q ss_pred             CcceeeeEEeecCceEEcCCCCCchhhhhccccchhhhhhhhhhCC----CCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025895          146 TSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK----VEPGSIVAVFGL-GTVGLAVAEGAKAAGAS  220 (246)
Q Consensus       146 ~g~~~~~~~~~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~----~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~  220 (246)
                       |+|+||+++|.+.++++|+++++++|+.+++++.|||+++.+..+    ++++++|||+|+ |++|++++|+|+.+|+ 
T Consensus       132 -G~~aey~~v~~~~~~~iP~~ls~~~Aa~l~~~~~tA~~al~~~~~~~~~~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga-  209 (375)
T 2vn8_A          132 -GTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDA-  209 (375)
T ss_dssp             -CSSBSEEEEEGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTTCCCTTTCTTCEEEEETTTSHHHHHHHHHHHHTTC-
T ss_pred             -ccceeEEEEcHHHeeeCCCCCCHHHHhhhHHHHHHHHHHHHHhcccccccCCCCEEEEECCCCHHHHHHHHHHHhCCC-
Confidence             399999999999999999999999999999889999999877788    899999999995 9999999999999999 


Q ss_pred             eEEEEcCChhHHHHHhhcCCCc
Q 025895          221 RVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       221 ~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      +|++++ +++|+++++++|++.
T Consensus       210 ~Vi~~~-~~~~~~~~~~lGa~~  230 (375)
T 2vn8_A          210 HVTAVC-SQDASELVRKLGADD  230 (375)
T ss_dssp             EEEEEE-CGGGHHHHHHTTCSE
T ss_pred             EEEEEe-ChHHHHHHHHcCCCE
Confidence            899988 678999999999984

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=100.00  E-value=7.8e-36  Score=260.72  Aligned_cols=184  Identities=29%  Similarity=0.372  Sum_probs=163.8

Q ss_pred             eeeeEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCC--CC-CCCCcccccceEEEEEEcCCCCCc
Q 025895           10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD--PE-GLFPCILGHEAAGIVESVGEGVTE   84 (246)
Q Consensus        10 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~--~~-~~~p~v~G~e~vG~V~~vG~~~~~   84 (246)
                      |||+++++++.+  ++++|.|.|+|++|||+|||.+++||++|++.+.|.+  .. ..+|.++|||++|+|+++|+++++
T Consensus         2 Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~   81 (333)
T 1wly_A            2 VMAAVIHKKGGPDNFVWEEVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPIVVGFEAAAVVEEVGPGVTD   81 (333)
T ss_dssp             CEEEEESSCSSGGGEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHC----------CCEECCCEEEEEEEEECTTCCS
T ss_pred             cEEEEEcccCCcceeEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhCCCcCCCCCCCCCccccceeEEEEEEECCCCCC
Confidence            899999988764  8999999999999999999999999999999998865  21 357999999999999999999999


Q ss_pred             cCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcC
Q 025895           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (246)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip  164 (246)
                      |++||||...+.                              .+|                  +|+||+++|.+.++++|
T Consensus        82 ~~~GdrV~~~~~------------------------------~~G------------------~~aey~~v~~~~~~~iP  113 (333)
T 1wly_A           82 FTVGERVCTCLP------------------------------PLG------------------AYSQERLYPAEKLIKVP  113 (333)
T ss_dssp             CCTTCEEEECSS------------------------------SCC------------------CSBSEEEEEGGGCEECC
T ss_pred             CCCCCEEEEecC------------------------------CCC------------------cceeEEEecHHHcEeCC
Confidence            999999975321                              123                  99999999999999999


Q ss_pred             CCCCchh--hhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          165 PQAPLDK--VCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       165 ~~~~~~~--aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      +++++++  |+.+++++.|||+++.+..+++++++|||+|+ |++|++++|+++..|+ +|+++++++++++.++++|++
T Consensus       114 ~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~g~~  192 (333)
T 1wly_A          114 KDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGA-TVIGTVSTEEKAETARKLGCH  192 (333)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCS
T ss_pred             CCCChHHhCccchhhhHHHHHHHHHHhhCCCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCC
Confidence            9999999  89999999999999877889999999999997 9999999999999999 999999999999999999987


Q ss_pred             c
Q 025895          242 S  242 (246)
Q Consensus       242 ~  242 (246)
                      .
T Consensus       193 ~  193 (333)
T 1wly_A          193 H  193 (333)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=100.00  E-value=3.2e-35  Score=256.45  Aligned_cols=190  Identities=21%  Similarity=0.205  Sum_probs=164.5

Q ss_pred             ccceeeeEeecCCC--CeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCC
Q 025895            7 VITCKAAVAWEPNK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVT   83 (246)
Q Consensus         7 ~~~~ka~~~~~~~~--~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~   83 (246)
                      |.+|||+++++++.  .++++|+|.|+|++|||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|  ++
T Consensus         2 ~~~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~~~--v~   79 (330)
T 1tt7_A            2 STLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVSSN--DP   79 (330)
T ss_dssp             CCEEEEEEECCGGGSCCCEEEEEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTTCSSCSEECCSEEEEEEEECS--ST
T ss_pred             CCcceEEEEecCCCCcceeEeecCCCCCCCCEEEEEEEEEecCHHHHhhhcCCCCCcCCCCccccceEEEEEEEcC--CC
Confidence            56799999998873  4899999999999999999999999999999999886543 3578999999999999964  57


Q ss_pred             ccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEc
Q 025895           84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI  163 (246)
Q Consensus        84 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i  163 (246)
                      +|++||||++.+..                        .|.. .+                  |+|+||+.+|.+.++++
T Consensus        80 ~~~vGdrV~~~~~~------------------------~g~~-~~------------------G~~aey~~v~~~~~~~i  116 (330)
T 1tt7_A           80 RFAEGDEVIATSYE------------------------LGVS-RD------------------GGLSEYASVPGDWLVPL  116 (330)
T ss_dssp             TCCTTCEEEEESTT------------------------BTTT-BC------------------CSSBSSEEECGGGEEEC
T ss_pred             CCCCCCEEEEcccc------------------------cCCC-CC------------------ccceeEEEecHHHeEEC
Confidence            89999999875320                        1111 22                  49999999999999999


Q ss_pred             CCCCCchhhhhccccchhhhhhhh--hhCCCCCCC-EEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcC
Q 025895          164 DPQAPLDKVCLLGCGVPTGLGAVW--NTAKVEPGS-IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCV  239 (246)
Q Consensus       164 p~~~~~~~aa~l~~~~~ta~~~l~--~~~~~~~~~-~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg  239 (246)
                      |+++++++|+.+++++.|+|.++.  ...++++++ +|||+|+ |++|++++|+|+.+|+ +|++++++++|+++++++|
T Consensus       117 P~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~lG  195 (330)
T 1tt7_A          117 PQNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQLG  195 (330)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHHT
T ss_pred             CCCCCHHHHhhccchHHHHHHHHHHHHhcCcCCCCceEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcC
Confidence            999999999999988899997764  346788886 9999998 9999999999999999 7999999999999999999


Q ss_pred             CCc
Q 025895          240 SSS  242 (246)
Q Consensus       240 ~~~  242 (246)
                      ++.
T Consensus       196 a~~  198 (330)
T 1tt7_A          196 ASE  198 (330)
T ss_dssp             CSE
T ss_pred             CcE
Confidence            984

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=100.00  E-value=1e-34  Score=256.57  Aligned_cols=184  Identities=19%  Similarity=0.155  Sum_probs=165.4

Q ss_pred             cccceeeeEeecCCC----CeEE-EEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcC
Q 025895            6 QVITCKAAVAWEPNK----PLVI-EDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVG   79 (246)
Q Consensus         6 ~~~~~ka~~~~~~~~----~~~~-~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG   79 (246)
                      .+.+|||++++++++    .+++ +|+|.|+|++|||+|||.+++||++|++++.|.++. ..+|.++|||++|+|+++|
T Consensus        20 ~~~~MkA~~~~~~g~~~~~~l~~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~i~G~E~~G~V~~vG   99 (362)
T 2c0c_A           20 FQSMMQKLVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDPSVKPPFDIGFEGIGEVVALG   99 (362)
T ss_dssp             HCCEEEEEEECSCCSSHHHHEEEEEEEECCCCCTTEEEEEEEEEECCTTHHHHHTTTTCTTCCSCEECCSEEEEEEEEEC
T ss_pred             chhhceEEEEeecCCCccceeEEEeecCCCCCCCCeEEEEEEEeccCHHHHHHhcCCCCCCCCCCCCCCceeEEEEEEEC
Confidence            356899999999875    3889 999999999999999999999999999999887643 4679999999999999999


Q ss_pred             CCCC-ccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecC
Q 025895           80 EGVT-EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV  158 (246)
Q Consensus        80 ~~~~-~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  158 (246)
                      ++++ +|++||||+...                                +                  |+|+||+++|.+
T Consensus       100 ~~V~~~~~vGdrV~~~~--------------------------------~------------------G~~aey~~v~~~  129 (362)
T 2c0c_A          100 LSASARYTVGQAVAYMA--------------------------------P------------------GSFAEYTVVPAS  129 (362)
T ss_dssp             TTGGGTCCTTCEEEEEC--------------------------------S------------------CCSBSEEEEEGG
T ss_pred             CCccCCCCCCCEEEEcc--------------------------------C------------------CcceeEEEEcHH
Confidence            9999 999999998541                                2                  389999999999


Q ss_pred             ceEEcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          159 SVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       159 ~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      .++++|+. + .+++.++.++.|||+++.+..+++++++|||+|+ |++|++++|+|+.+|+ +|++++++++|++.+++
T Consensus       130 ~~~~~P~~-~-~~aaal~~~~~ta~~al~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~  206 (362)
T 2c0c_A          130 IATPVPSV-K-PEYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLKS  206 (362)
T ss_dssp             GCEECSSS-C-HHHHTTTTHHHHHHHHHHHHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH
T ss_pred             HeEECCCC-c-hHhhcccchHHHHHHHHHHhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHH
Confidence            99999996 3 4567788899999999888889999999999996 9999999999999999 89999999999999999


Q ss_pred             cCCCc
Q 025895          238 CVSSS  242 (246)
Q Consensus       238 lg~~~  242 (246)
                      +|++.
T Consensus       207 ~Ga~~  211 (362)
T 2c0c_A          207 LGCDR  211 (362)
T ss_dssp             TTCSE
T ss_pred             cCCcE
Confidence            99983

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=5.1e-35  Score=254.93  Aligned_cols=189  Identities=17%  Similarity=0.194  Sum_probs=163.3

Q ss_pred             cceeeeEeecCCC--CeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCCc
Q 025895            8 ITCKAAVAWEPNK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTE   84 (246)
Q Consensus         8 ~~~ka~~~~~~~~--~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~~   84 (246)
                      .+|||+++++++.  .++++|+|.|+|++|||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++  ++++
T Consensus         2 ~~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~~--~v~~   79 (328)
T 1xa0_A            2 SAFQAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVSS--QHPR   79 (328)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSSCCSSSBCCCSEEEEEEEEC--CSSS
T ss_pred             CcceEEEEecCCCcceeEEEeccCCCCCCCeEEEEEEEEecCHHHHHhhcCCCCCCCCCCcccCcceEEEEEec--CCCC
Confidence            4799999999874  3889999999999999999999999999999998875432 357899999999999996  4678


Q ss_pred             cCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcC
Q 025895           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (246)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip  164 (246)
                      |++||||++.+..                        .|.. .+                  |+|+||+++|.+.++++|
T Consensus        80 ~~vGdrV~~~~~~------------------------~g~~-~~------------------G~~aey~~v~~~~~~~~P  116 (328)
T 1xa0_A           80 FREGDEVIATGYE------------------------IGVT-HF------------------GGYSEYARLHGEWLVPLP  116 (328)
T ss_dssp             CCTTCEEEEESTT------------------------BTTT-BC------------------CSSBSEEEECGGGCEECC
T ss_pred             CCCCCEEEEcccc------------------------CCCC-CC------------------ccceeEEEechHHeEECC
Confidence            9999999865320                        1110 22                  499999999999999999


Q ss_pred             CCCCchhhhhccccchhhhhhhh--hhCCCCCCC-EEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCC
Q 025895          165 PQAPLDKVCLLGCGVPTGLGAVW--NTAKVEPGS-IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVS  240 (246)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~l~--~~~~~~~~~-~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~  240 (246)
                      +++++++|+.+++++.|+|.++.  ...++++++ +|||+|+ |++|++++|+|+.+|+ +|++++++++|+++++++|+
T Consensus       117 ~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~lGa  195 (328)
T 1xa0_A          117 KGLTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVLGA  195 (328)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHTTC
T ss_pred             CCCCHHHhhhhhhhHHHHHHHHHHHhhcCCCCCCceEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCC
Confidence            99999999999988899997764  346788886 9999998 9999999999999999 89999999999999999999


Q ss_pred             Cc
Q 025895          241 SS  242 (246)
Q Consensus       241 ~~  242 (246)
                      +.
T Consensus       196 ~~  197 (328)
T 1xa0_A          196 KE  197 (328)
T ss_dssp             SE
T ss_pred             cE
Confidence            83

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=100.00  E-value=5.4e-35  Score=259.86  Aligned_cols=184  Identities=17%  Similarity=0.162  Sum_probs=163.6

Q ss_pred             cccceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCC--------------------------
Q 025895            6 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP--------------------------   59 (246)
Q Consensus         6 ~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~--------------------------   59 (246)
                      ...+|||++.......++++|+|.|+|++|||+|||++++||++|++.+.|.++                          
T Consensus         4 ~~~~mka~v~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~g~~~~p~~~~~~p~~~~~~   83 (379)
T 3iup_A            4 SALQLRSRIKSSGELELSLDSIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAERPIVTARVPEGAMRS   83 (379)
T ss_dssp             EEEEEEEEECTTSEEEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTTCEEEEEEEEECSSSEEEEEECCHHHHHH
T ss_pred             chhhHHHHHhcCCCCceEEEeccCCCCCCCEEEEEEEEEecCHHHHHHhcCCccccccccccccccccccccCccccccc
Confidence            357899999976555699999999999999999999999999999999987521                          


Q ss_pred             ---CCCCCcccccceEEEEEEcCCCC-CccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCcccccc
Q 025895           60 ---EGLFPCILGHEAAGIVESVGEGV-TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSI  135 (246)
Q Consensus        60 ---~~~~p~v~G~e~vG~V~~vG~~~-~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~  135 (246)
                         ...+|.++|||++|+|+++|+++ ++|++||||+..+                                +|      
T Consensus        84 ~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~vGdrV~~~~--------------------------------~G------  125 (379)
T 3iup_A           84 MAGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKTVAAIG--------------------------------GA------  125 (379)
T ss_dssp             HGGGTTEEEECCSCEEEEEEEECSSHHHHTTTTCEEEECC--------------------------------SC------
T ss_pred             cccccCCCccceeeeEEEEEEeCCCcccCCCCCCEEEecC--------------------------------CC------
Confidence               12468999999999999999999 8899999998642                                23      


Q ss_pred             CCcceeeccCCcceeeeEEeecCceEEcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEE--CCCHHHHHHHHH
Q 025895          136 NGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF--GLGTVGLAVAEG  213 (246)
Q Consensus       136 ~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~--Gag~~G~~ai~~  213 (246)
                                  +|+||+++|.+.++++|+++++++|+.+++...|||+++ +... +++++|||+  |+|++|++++|+
T Consensus       126 ------------~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~-~~~~-~~g~~vlV~gag~G~vG~~a~q~  191 (379)
T 3iup_A          126 ------------MYSQYRCIPADQCLVLPEGATPADGASSFVNPLTALGMV-ETMR-LEGHSALVHTAAASNLGQMLNQI  191 (379)
T ss_dssp             ------------CSBSEEEEEGGGEEECCTTCCHHHHTTSSHHHHHHHHHH-HHHH-HTTCSCEEESSTTSHHHHHHHHH
T ss_pred             ------------cceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHH-HHhc-cCCCEEEEECCCCCHHHHHHHHH
Confidence                        899999999999999999999999999999999999765 4444 899999999  459999999999


Q ss_pred             HHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          214 AKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       214 a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      |+.+|+ +|++++++++|+++++++|++.
T Consensus       192 a~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~  219 (379)
T 3iup_A          192 CLKDGI-KLVNIVRKQEQADLLKAQGAVH  219 (379)
T ss_dssp             HHHHTC-CEEEEESSHHHHHHHHHTTCSC
T ss_pred             HHHCCC-EEEEEECCHHHHHHHHhCCCcE
Confidence            999999 8999999999999999999984

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=100.00  E-value=2.9e-33  Score=244.64  Aligned_cols=179  Identities=18%  Similarity=0.158  Sum_probs=158.6

Q ss_pred             cceeeeEeec------CCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccc----eEEEEEE
Q 025895            8 ITCKAAVAWE------PNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE----AAGIVES   77 (246)
Q Consensus         8 ~~~ka~~~~~------~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e----~vG~V~~   77 (246)
                      ++|||+++.+      ..+.++++|+|.|+|++|||+|||++++||++|+..+.+.... .+|.++|||    ++|+|++
T Consensus         6 ~~mka~v~~~~~~g~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~d~~~~~~~~~~-~~p~~~G~e~g~~~~G~V~~   84 (336)
T 4b7c_A            6 QINRQYQLAQRPSGLPGRDTFSFVETPLGEPAEGQILVKNEYLSLDPAMRGWMNDARSY-IPPVGIGEVMRALGVGKVLV   84 (336)
T ss_dssp             CEEEEEEECSCCSSSCCTTSEEEEEEECCCCCTTCEEEEEEEEECCTHHHHHHSCSCCS-SCCCCTTSBCCCEEEEEEEE
T ss_pred             ccccEEEEEecCCCCCCCCceEEEeccCCCCCCCEEEEEEEEEEeCHHHHhhhhccccc-CCCCCCCcccCCceEEEEEe
Confidence            6799999985      2234999999999999999999999999999999888764322 457777887    8999999


Q ss_pred             cCCCCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeec
Q 025895           78 VGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD  157 (246)
Q Consensus        78 vG~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~  157 (246)
                      .  ++++|++||||+..                                  |                  +|+||+++|.
T Consensus        85 ~--~v~~~~vGdrV~~~----------------------------------G------------------~~aey~~v~~  110 (336)
T 4b7c_A           85 S--KHPGFQAGDYVNGA----------------------------------L------------------GVQDYFIGEP  110 (336)
T ss_dssp             E--CSTTCCTTCEEEEE----------------------------------C------------------CSBSEEEECC
T ss_pred             c--CCCCCCCCCEEecc----------------------------------C------------------CceEEEEech
Confidence            4  58899999999732                                  2                  8999999999


Q ss_pred             CceEEcCCCCCchhh--hhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 025895          158 VSVAKIDPQAPLDKV--CLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR  234 (246)
Q Consensus       158 ~~~~~ip~~~~~~~a--a~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~  234 (246)
                      +.++++|+++++.++  +.+++++.|||+++.+..+++++++|||+|+ |++|++++|+++..|+ +|++++++++|++.
T Consensus       111 ~~~~~~P~~~~~~~~a~a~l~~~~~tA~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~  189 (336)
T 4b7c_A          111 KGFYKVDPSRAPLPRYLSALGMTGMTAYFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGC-RVVGIAGGAEKCRF  189 (336)
T ss_dssp             TTCEEECTTTSCGGGGGTTTSHHHHHHHHHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHH
T ss_pred             HHeEEcCCCCCchHHHhhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            999999999977776  7788899999999888899999999999998 9999999999999999 99999999999999


Q ss_pred             H-hhcCCCc
Q 025895          235 G-MSCVSSS  242 (246)
Q Consensus       235 ~-~~lg~~~  242 (246)
                      + +++|++.
T Consensus       190 ~~~~~g~~~  198 (336)
T 4b7c_A          190 LVEELGFDG  198 (336)
T ss_dssp             HHHTTCCSE
T ss_pred             HHHHcCCCE
Confidence            9 8999973

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=100.00  E-value=1.2e-32  Score=242.77  Aligned_cols=185  Identities=19%  Similarity=0.244  Sum_probs=160.2

Q ss_pred             CCcccceeeeEe-ecC---CC----CeEEEEeecCCC-CCCeEEEEEeeeecchhhhhhhcC----CCC-CCCCCccccc
Q 025895            4 EGQVITCKAAVA-WEP---NK----PLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSG----KDP-EGLFPCILGH   69 (246)
Q Consensus         4 ~~~~~~~ka~~~-~~~---~~----~~~~~e~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~~----~~~-~~~~p~v~G~   69 (246)
                      ..++++|||+++ +.+   |.    .++++|+|.|+| ++|||+|||.+++||++|++.+.+    .+. ...+|.++||
T Consensus         3 ~~~~~~mka~v~~~~~~~~g~p~~~~l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~~~~g~~~~~~~~~p~v~G~   82 (357)
T 2zb4_A            3 AAAAMIVQRVVLNSRPGKNGNPVAENFRMEEVYLPDNINEGQVQVRTLYLSVDPYMRCRMNEDTGTDYITPWQLSQVVDG   82 (357)
T ss_dssp             ---CCEEEEEEECCCCCTTSCCCGGGEEEEEEECCSCCCTTEEEEEEEEEECCTTHHHHTSSSCSSSSSCCCCBTSBCEE
T ss_pred             CcccccceEEEEeccCCCCCCCCcCceEEEeecCCCCCCCCeEEEEEEEEecCHHHHhhccccccccccCCCCCCccccc
Confidence            356789999999 555   43    399999999999 999999999999999999887765    232 2357899999


Q ss_pred             ceEEEEEEcCCCCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcce
Q 025895           70 EAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTF  149 (246)
Q Consensus        70 e~vG~V~~vG~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~  149 (246)
                      |++|+|++  +++++|++||||+...                                                   |+|
T Consensus        83 E~~G~V~~--~~v~~~~vGdrV~~~~---------------------------------------------------G~~  109 (357)
T 2zb4_A           83 GGIGIIEE--SKHTNLTKGDFVTSFY---------------------------------------------------WPW  109 (357)
T ss_dssp             EEEEEEEE--ECSTTCCTTCEEEEEE---------------------------------------------------EES
T ss_pred             cEEEEEEe--cCCCCCCCCCEEEecC---------------------------------------------------CCc
Confidence            99999999  8889999999998531                                                   289


Q ss_pred             eeeEEeecCceEEcCCCC-----CchhhhhccccchhhhhhhhhhCCCCCC--CEEEEECC-CHHHHHHHHHHHHcCCCe
Q 025895          150 SQYTVVHDVSVAKIDPQA-----PLDKVCLLGCGVPTGLGAVWNTAKVEPG--SIVAVFGL-GTVGLAVAEGAKAAGASR  221 (246)
Q Consensus       150 ~~~~~~~~~~~~~ip~~~-----~~~~aa~l~~~~~ta~~~l~~~~~~~~~--~~VlI~Ga-g~~G~~ai~~a~~~G~~~  221 (246)
                      +||+++|.+.++++|+++     +++ ++.++.++.|||+++.+..+++++  ++|||+|+ |++|++++|+++..|+.+
T Consensus       110 aey~~v~~~~~~~iP~~~~~~~~~~~-~a~l~~~~~ta~~al~~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~  188 (357)
T 2zb4_A          110 QTKVILDGNSLEKVDPQLVDGHLSYF-LGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSR  188 (357)
T ss_dssp             BSEEEEEGGGCEECCGGGGTTCGGGG-GTTTSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSE
T ss_pred             EEEEEEchHHceecCcccccCchhHH-HHhcccHHHHHHHHHHHhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCe
Confidence            999999999999999999     555 677888999999998788999999  99999998 999999999999999878


Q ss_pred             EEEEcCChhHHHHHhh-cCCCc
Q 025895          222 VIGIDIDPKKFDRGMS-CVSSS  242 (246)
Q Consensus       222 vi~~~~~~~~~~~~~~-lg~~~  242 (246)
                      |+++++++++++.+++ +|++.
T Consensus       189 Vi~~~~~~~~~~~~~~~~g~~~  210 (357)
T 2zb4_A          189 VVGICGTHEKCILLTSELGFDA  210 (357)
T ss_dssp             EEEEESCHHHHHHHHHTSCCSE
T ss_pred             EEEEeCCHHHHHHHHHHcCCce
Confidence            9999999999999887 99873

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=100.00  E-value=7.9e-33  Score=238.54  Aligned_cols=171  Identities=22%  Similarity=0.240  Sum_probs=156.2

Q ss_pred             eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCCccCCC
Q 025895           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQPG   88 (246)
Q Consensus        10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~~~~~G   88 (246)
                      |||+++++++++..++|.|.|+|++|||+|||.+++||++|++++.|.++. ..+|.++|||++|+|+           |
T Consensus         1 Mka~~~~~~g~~~~l~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~e~~G~V~-----------G   69 (302)
T 1iz0_A            1 MKAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVVE-----------G   69 (302)
T ss_dssp             CEEEEECSTTSCEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCCEEEEEET-----------T
T ss_pred             CeEEEEcCCCCchheEECCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCcccceEEEEEE-----------C
Confidence            799999999987677899999999999999999999999999999986653 3679999999999998           9


Q ss_pred             CEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCC
Q 025895           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP  168 (246)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~  168 (246)
                      |||+..+                               .+|                  +|+||+++|.+.++++|++++
T Consensus        70 drV~~~~-------------------------------~~G------------------~~aey~~v~~~~~~~iP~~~~  100 (302)
T 1iz0_A           70 RRYAALV-------------------------------PQG------------------GLAERVAVPKGALLPLPEGLS  100 (302)
T ss_dssp             EEEEEEC-------------------------------SSC------------------CSBSEEEEEGGGCEECCTTCC
T ss_pred             cEEEEec-------------------------------CCc------------------ceeeEEEEcHHHcEeCCCCCC
Confidence            9998653                               123                  899999999999999999999


Q ss_pred             chhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       169 ~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      +++++.+++++.|||+++.+.. ++++++|||+|+ |++|++++|+++.+|+ +|++++++++|++.++++|++.
T Consensus       101 ~~~aa~l~~~~~ta~~~l~~~~-~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~~  173 (302)
T 1iz0_A          101 PEEAAAFPVSFLTAYLALKRAQ-ARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLALGAEE  173 (302)
T ss_dssp             HHHHHTSHHHHHHHHHHHHHTT-CCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHHTTCSE
T ss_pred             HHHHHHhhhHHHHHHHHHHHhc-CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcCCCE
Confidence            9999999999999999987677 999999999998 9999999999999999 9999999999999999999983

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=99.97  E-value=7.2e-30  Score=222.79  Aligned_cols=177  Identities=18%  Similarity=0.158  Sum_probs=153.0

Q ss_pred             cccceeeeEeecC--C----CCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcC
Q 025895            6 QVITCKAAVAWEP--N----KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVG   79 (246)
Q Consensus         6 ~~~~~ka~~~~~~--~----~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG   79 (246)
                      .+++||++++.+.  +    +.++++|+|.|+|++|||+|||.+++||+.|.. +..   ...+|.++|||++|+|++. 
T Consensus         4 ~~~~mka~~~~~~~~g~~~~~~l~~~e~~~P~~~~~eVlVkv~a~gi~~~~~~-~~~---~~~~p~~~g~e~~G~Vv~~-   78 (333)
T 1v3u_A            4 FMVKAKSWTLKKHFQGKPTQSDFELKTVELPPLKNGEVLLEALFLSVDPYMRI-ASK---RLKEGAVMMGQQVARVVES-   78 (333)
T ss_dssp             CCCEEEEEEECC-----CCGGGEEEEEEECCCCCTTCEEEEEEEEECCTHHHH-HTT---TCCTTSBCCCCEEEEEEEE-
T ss_pred             ccccccEEEEeecCCCCCCccceEEEeCCCCCCCCCEEEEEEEEeccCHHHcc-ccC---cCCCCcccccceEEEEEec-
Confidence            3678999999874  3    339999999999999999999999999998873 221   2256789999999999995 


Q ss_pred             CCCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCc
Q 025895           80 EGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVS  159 (246)
Q Consensus        80 ~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  159 (246)
                       ++++|++||||+..                                  |                  +|+||++++.+.
T Consensus        79 -~v~~~~vGdrV~~~----------------------------------g------------------~~aey~~v~~~~  105 (333)
T 1v3u_A           79 -KNSAFPAGSIVLAQ----------------------------------S------------------GWTTHFISDGKG  105 (333)
T ss_dssp             -SCTTSCTTCEEEEC----------------------------------C------------------CSBSEEEESSTT
T ss_pred             -CCCCCCCCCEEEec----------------------------------C------------------ceEEEEEechHH
Confidence             57889999999732                                  2                  899999999999


Q ss_pred             eEEcCCC----CCchh-hhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 025895          160 VAKIDPQ----APLDK-VCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (246)
Q Consensus       160 ~~~ip~~----~~~~~-aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~  233 (246)
                      ++++|++    +++++ ++.+++++.|||+++.+..+++++++|||+|+ |++|++++|+++..|+ +|+++++++++++
T Consensus       106 ~~~iP~~~~~~~~~~~a~a~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~  184 (333)
T 1v3u_A          106 LEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIA  184 (333)
T ss_dssp             EEECC--CCTTSCGGGGGTTTSHHHHHHHHHHHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHH
T ss_pred             eEEcCcccccCCCHHHHHHHhCChHHHHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            9999997    88887 47888899999999878889999999999998 9999999999999999 9999999999999


Q ss_pred             HHhhcCCC
Q 025895          234 RGMSCVSS  241 (246)
Q Consensus       234 ~~~~lg~~  241 (246)
                      .++++|++
T Consensus       185 ~~~~~g~~  192 (333)
T 1v3u_A          185 YLKQIGFD  192 (333)
T ss_dssp             HHHHTTCS
T ss_pred             HHHhcCCc
Confidence            99999986

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=99.96  E-value=7.8e-30  Score=245.27  Aligned_cols=175  Identities=27%  Similarity=0.324  Sum_probs=153.1

Q ss_pred             eeeEeecCCCC--eEEEEeec--CCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccC
Q 025895           11 KAAVAWEPNKP--LVIEDVQV--APPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQ   86 (246)
Q Consensus        11 ka~~~~~~~~~--~~~~e~~~--p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~   86 (246)
                      ..+.+..+|.+  +++++.|.  |+|++|||+|||.++|||++|++++.|.++   .|.++|||++|+|+++|+++++|+
T Consensus       211 ~~l~~~~~G~~~~L~~~~~~~p~~~~~~~eVlV~V~a~gin~~D~~~~~G~~~---~~~~lG~E~aG~V~~vG~~V~~~~  287 (795)
T 3slk_A          211 WRLEATRPGSLDGLALVDEPTATAPLGDGEVRIAMRAAGVNFRDALIALGMYP---GVASLGSEGAGVVVETGPGVTGLA  287 (795)
T ss_dssp             CCEEESSTTSSTTEEECCCHHHHSCCCSSEEEEEEEEEEECHHHHHHTTTCCS---SCCCSCCCEEEEEEEECSSCCSSC
T ss_pred             EEEecCCCCCccceEEEeCCccCCCCCCCEEEEEEEEEccCHHHHHHHcCCCC---CCccccceeEEEEEEeCCCCCcCC
Confidence            44555566654  88888774  578999999999999999999999988764   346799999999999999999999


Q ss_pred             CCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCC
Q 025895           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (246)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~  166 (246)
                      +||||+..                                .+|                  +|++|++++...++++|++
T Consensus       288 vGDrV~~~--------------------------------~~G------------------~~ae~~~v~~~~~~~iP~~  317 (795)
T 3slk_A          288 PGDRVMGM--------------------------------IPK------------------AFGPLAVADHRMVTRIPAG  317 (795)
T ss_dssp             TTCEEEEC--------------------------------CSS------------------CSSSEEEEETTSEEECCTT
T ss_pred             CCCEEEEE--------------------------------ecC------------------CCcCEEEeehHHEEECCCC
Confidence            99999753                                223                  8999999999999999999


Q ss_pred             CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      +++++|+.+++++.|+|+++.+..++++|++|||+|+ |++|++++|+||.+|+ +|+++++++ |.+.++ +|++
T Consensus       318 ls~~~AA~l~~~~~Ta~~al~~~a~l~~G~~VLI~gaaGgvG~~aiqlAk~~Ga-~V~~t~~~~-k~~~l~-lga~  390 (795)
T 3slk_A          318 WSFARAASVPIVFLTAYYALVDLAGLRPGESLLVHSAAGGVGMAAIQLARHLGA-EVYATASED-KWQAVE-LSRE  390 (795)
T ss_dssp             CCHHHHHHHHHHHHHHHCCCCCCTCCCTTCCEEEESTTBHHHHHHHHHHHHTTC-CEEEECCGG-GGGGSC-SCGG
T ss_pred             CCHHHHHhhhHHHHHHHHHHHHHhCCCCCCEEEEecCCCHHHHHHHHHHHHcCC-EEEEEeChH-Hhhhhh-cChh
Confidence            9999999999999999999888999999999999997 9999999999999999 899998666 655555 7776

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=99.96  E-value=2.3e-29  Score=220.53  Aligned_cols=177  Identities=21%  Similarity=0.187  Sum_probs=147.1

Q ss_pred             eeeeEeecCCC-CeEEE--EeecCC-CCCCeEEEEEeeeecchhhhhhhcCCCCC----CCCCcccccceEEEEEE--cC
Q 025895           10 CKAAVAWEPNK-PLVIE--DVQVAP-PQAGEVRIKILFTALCHTDAYTWSGKDPE----GLFPCILGHEAAGIVES--VG   79 (246)
Q Consensus        10 ~ka~~~~~~~~-~~~~~--e~~~p~-~~~~eVlVkv~~~~i~~~D~~~~~~~~~~----~~~p~v~G~e~vG~V~~--vG   79 (246)
                      ||++++.+++. .++++  |+|.|. |++|||||||.++++|+.|. .+.+.+..    ..+|.++|||.+|++++  +|
T Consensus        10 m~a~~~~~p~~~~l~~~~~~~~~P~~~~~~eVlVkv~a~g~~~~~~-~~~g~~~~~~~~~~~p~v~G~e~~G~~~~GvV~   88 (345)
T 2j3h_A           10 LKDYVSGFPTESDFDFTTTTVELRVPEGTNSVLVKNLYLSCDPYMR-IRMGKPDPSTAALAQAYTPGQPIQGYGVSRIIE   88 (345)
T ss_dssp             ECSCBSSSCCGGGEEEEEEEEECCSCSSSSCEEEEECEEECCTTHH-HHHBC---------CCCCTTSBCEEEEEEEEEE
T ss_pred             EecCCCCCCCccceeEEEeecCCCCCCCCCEEEEEEEEecCCHHHH-hhcccCCCCccccCCCcCCCCeeecceEEEEEe
Confidence            44444445553 38888  889887 89999999999999988874 44454322    14689999999999999  99


Q ss_pred             CCCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCc
Q 025895           80 EGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVS  159 (246)
Q Consensus        80 ~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  159 (246)
                      +++++|++||||+..                                                    |+|+||+.++...
T Consensus        89 ~~v~~~~vGdrV~~~----------------------------------------------------g~~aey~~v~~~~  116 (345)
T 2j3h_A           89 SGHPDYKKGDLLWGI----------------------------------------------------VAWEEYSVITPMT  116 (345)
T ss_dssp             ECSTTCCTTCEEEEE----------------------------------------------------EESBSEEEECCCT
T ss_pred             cCCCCCCCCCEEEee----------------------------------------------------cCceeEEEecccc
Confidence            999999999999742                                                    2899999998876


Q ss_pred             --eEEcCC---CCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 025895          160 --VAKIDP---QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (246)
Q Consensus       160 --~~~ip~---~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~  233 (246)
                        ++++|+   .++++ ++.+++++.|||+++.+..+++++++|||+|+ |++|++++|+++..|+ +|+++++++++++
T Consensus       117 ~~~~~ip~~~~~~~~~-aa~l~~~~~ta~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~-~V~~~~~~~~~~~  194 (345)
T 2j3h_A          117 HAHFKIQHTDVPLSYY-TGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGC-YVVGSAGSKEKVD  194 (345)
T ss_dssp             TTCEEECCCSSCTTGG-GTTTSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHH
T ss_pred             cceeecCCCCCCHHHH-HHhccccHHHHHHHHHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence              999996   35555 67788899999999878889999999999998 9999999999999999 9999999999999


Q ss_pred             HHh-hcCCC
Q 025895          234 RGM-SCVSS  241 (246)
Q Consensus       234 ~~~-~lg~~  241 (246)
                      .++ ++|++
T Consensus       195 ~~~~~~g~~  203 (345)
T 2j3h_A          195 LLKTKFGFD  203 (345)
T ss_dssp             HHHHTSCCS
T ss_pred             HHHHHcCCc
Confidence            998 79987

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.84  E-value=1.2e-20  Score=198.62  Aligned_cols=161  Identities=16%  Similarity=0.138  Sum_probs=137.8

Q ss_pred             eEEEEeecCC-C--CCCeEEEEEeeeecchhhhhhhcCCCCCC-------CCCcccccceEEEEEEcCCCCCccCCCCEE
Q 025895           22 LVIEDVQVAP-P--QAGEVRIKILFTALCHTDAYTWSGKDPEG-------LFPCILGHEAAGIVESVGEGVTEVQPGDHV   91 (246)
Q Consensus        22 ~~~~e~~~p~-~--~~~eVlVkv~~~~i~~~D~~~~~~~~~~~-------~~p~v~G~e~vG~V~~vG~~~~~~~~Gd~V   91 (246)
                      +.+.+.+... +  .++||+|||.++++|+.|+.+..|.++..       ..|.++|+|++|+|.          +||+|
T Consensus      1544 l~~~~~~~~~~~~l~~~eVlVkV~aaglN~~Dv~~~~G~~~~~~~p~~~~~~~~~lG~E~aG~V~----------vGdrV 1613 (2512)
T 2vz8_A         1544 IRWVCSPLHYALPASCQDRLCSVYYTSLNFRDVMLATGKLSPDSIPGKWLTRDCMLGMEFSGRDA----------SGRRV 1613 (2512)
T ss_dssp             EEEEECTTTTCCCHHHHTTEEEEEEEECCHHHHHHHHTSSCGGGCCSCCSCSSSCCCCEEEEEET----------TSCCE
T ss_pred             eEEEecCcccccCCCCCceEEEEEecccCHHHHHHHhCCCccccccccccccCCceEEEEEEEEc----------cCCEE
Confidence            5666655433 2  27899999999999999999998865422       245789999999872          79999


Q ss_pred             EeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCCchh
Q 025895           92 IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDK  171 (246)
Q Consensus        92 ~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~  171 (246)
                      +...                               .+|                  +|++|+++|.+.++++|+++++++
T Consensus      1614 ~g~~-------------------------------~~G------------------~~Aeyv~vp~~~v~~iPd~ls~~e 1644 (2512)
T 2vz8_A         1614 MGMV-------------------------------PAE------------------GLATSVLLLQHATWEVPSTWTLEE 1644 (2512)
T ss_dssp             EEEC-------------------------------SSC------------------CSBSEEECCGGGEEECCTTSCHHH
T ss_pred             EEee-------------------------------cCC------------------ceeeEEEcccceEEEeCCCCCHHH
Confidence            7542                               123                  899999999999999999999999


Q ss_pred             hhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh----cCCCc
Q 025895          172 VCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS----CVSSS  242 (246)
Q Consensus       172 aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~----lg~~~  242 (246)
                      |+.+++++.|+|+++....++++|++|||+|+ |++|++++|+||.+|+ +|++++.+++|++.+++    +|++.
T Consensus      1645 AA~lp~~~~TA~~al~~~a~l~~Ge~VLI~gaaGgVG~aAiqlAk~~Ga-~Viat~~s~~k~~~l~~~~~~lga~~ 1719 (2512)
T 2vz8_A         1645 AASVPIVYTTAYYSLVVRGRMQPGESVLIHSGSGGVGQAAIAIALSRGC-RVFTTVGSAEKRAYLQARFPQLDETC 1719 (2512)
T ss_dssp             HTTSHHHHHHHHHHHTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCTTCCSTT
T ss_pred             HHHhHHHHHHHHHHHHHHhcCCCCCEEEEEeCChHHHHHHHHHHHHcCC-EEEEEeCChhhhHHHHhhcCCCCceE
Confidence            99999999999999888899999999999987 9999999999999999 99999999999999986    67763

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=99.35  E-value=1e-12  Score=105.69  Aligned_cols=83  Identities=20%  Similarity=0.196  Sum_probs=66.6

Q ss_pred             CceEEcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895          158 VSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       158 ~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~  236 (246)
                      +.++++|+++++++|+.+++++.|+|+++.+..+++++++|||+|+ |++|++++++++..|+ +|+++++++++.+.++
T Consensus         2 ~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~   80 (198)
T 1pqw_A            2 DLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLS   80 (198)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHH
T ss_pred             CceeECCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence            4678999999999999999999999998877789999999999996 9999999999999999 8999999999999999


Q ss_pred             hcCCC
Q 025895          237 SCVSS  241 (246)
Q Consensus       237 ~lg~~  241 (246)
                      ++|++
T Consensus        81 ~~g~~   85 (198)
T 1pqw_A           81 RLGVE   85 (198)
T ss_dssp             TTCCS
T ss_pred             HcCCC
Confidence            99886

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.58  E-value=1e-07  Score=78.47  Aligned_cols=118  Identities=8%  Similarity=-0.011  Sum_probs=77.6

Q ss_pred             cCCCCEEEeeC-------CCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeec
Q 025895           85 VQPGDHVIPCY-------QAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD  157 (246)
Q Consensus        85 ~~~Gd~V~~~~-------~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~  157 (246)
                      +++||+|++.+       ...|+.|.+|..|..++|.....        ..|                  ...+      
T Consensus         4 ~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~~g~--------~~G------------------~~~~------   51 (248)
T 2yvl_A            4 FKEGEYVLIRFGEKKFLRKLLPKQSLSVKKSVLKFDEVIGK--------PEG------------------VKIN------   51 (248)
T ss_dssp             CCTTCEEEEEETTEEEEEECCTTCEEEETTEEEEGGGTTTC--------CTT------------------EEET------
T ss_pred             CCCCCEEEEEeCCeEEEEEEcCCCEEecCCceEEHHHhcCC--------CCC------------------CEEE------
Confidence            89999999998       67888999998888888875321        111                  2212      


Q ss_pred             CceEEcCCCCCchhhhhccc----cchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 025895          158 VSVAKIDPQAPLDKVCLLGC----GVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (246)
Q Consensus       158 ~~~~~ip~~~~~~~aa~l~~----~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~  233 (246)
                      ...++.|+.....+.+....    ....+. .+.....++++++||.+|+| .|..++.+++. +. ++++++.+++.++
T Consensus        52 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~vldiG~G-~G~~~~~l~~~-~~-~v~~vD~~~~~~~  127 (248)
T 2yvl_A           52 GFEVYRPTLEEIILLGFERKTQIIYPKDSF-YIALKLNLNKEKRVLEFGTG-SGALLAVLSEV-AG-EVWTFEAVEEFYK  127 (248)
T ss_dssp             TEEEECCCHHHHHHHTSCCSSCCCCHHHHH-HHHHHTTCCTTCEEEEECCT-TSHHHHHHHHH-SS-EEEEECSCHHHHH
T ss_pred             EEEEeCCCHHHHHHhcCcCCCCcccchhHH-HHHHhcCCCCCCEEEEeCCC-ccHHHHHHHHh-CC-EEEEEecCHHHHH
Confidence            33333333222221111100    011111 24466778899999999998 68889999988 66 9999999999988


Q ss_pred             HHhhc
Q 025895          234 RGMSC  238 (246)
Q Consensus       234 ~~~~l  238 (246)
                      .+++.
T Consensus       128 ~a~~~  132 (248)
T 2yvl_A          128 TAQKN  132 (248)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87763

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=98.32  E-value=3.2e-09  Score=94.63  Aligned_cols=136  Identities=16%  Similarity=0.087  Sum_probs=100.4

Q ss_pred             cccccceEEEEEEcCCCCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeecc
Q 025895           65 CILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFM  144 (246)
Q Consensus        65 ~v~G~e~vG~V~~vG~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~  144 (246)
                      ...|++.++.|.++|++++++.+|+.+++.+...                        ++.                ...
T Consensus        75 ~~~g~~a~~~i~~v~~Glds~~vGe~~Il~qvk~------------------------~~~----------------~~~  114 (404)
T 1gpj_A           75 VKRGSEAVRHLFRVASGLESMMVGEQEILRQVKK------------------------AYD----------------RAA  114 (404)
T ss_dssp             EEEHHHHHHHHHHHHTTTTSSSTTCHHHHHHHHH------------------------HHH----------------HHH
T ss_pred             eecCchHhhhheeeccCCCCCcCCcchhHHHHHH------------------------HHH----------------HHH
Confidence            4679999999999999999999999875322100                        000                001


Q ss_pred             CCcceeeeEEeecCceEEcCCCCCchhhhhccccchhhhhhhhhhC---CCCCCCEEEEECCCHHHHHHHHHHHHcCCCe
Q 025895          145 GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTA---KVEPGSIVAVFGLGTVGLAVAEGAKAAGASR  221 (246)
Q Consensus       145 ~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~---~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~  221 (246)
                      ..|++++|+..+...++++|++++.+.++.. .+..++|.++....   .-.++++|+|+|+|.+|.++++.++..|+.+
T Consensus       115 ~~G~~~~~~~~~~~~a~~~~k~v~~~~~~~~-~~~s~a~~av~~a~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~  193 (404)
T 1gpj_A          115 RLGTLDEALKIVFRRAINLGKRAREETRISE-GAVSIGSAAVELAERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRA  193 (404)
T ss_dssp             HHTCCCHHHHHHHHHHHHHHHHHHHHSSTTC-SCCSHHHHHHHHHHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSE
T ss_pred             HcCCchHHHHHHHHHHhhhhccCcchhhhcC-CCccHHHHHHHHHHHHhccccCCEEEEEChHHHHHHHHHHHHHCCCCE
Confidence            1236777777777888888988877766553 35667776553211   1257899999999999999999999999888


Q ss_pred             EEEEcCChhHH-HHHhhcCCC
Q 025895          222 VIGIDIDPKKF-DRGMSCVSS  241 (246)
Q Consensus       222 vi~~~~~~~~~-~~~~~lg~~  241 (246)
                      |++++++++|. ++++++|++
T Consensus       194 V~v~~r~~~ra~~la~~~g~~  214 (404)
T 1gpj_A          194 VLVANRTYERAVELARDLGGE  214 (404)
T ss_dssp             EEEECSSHHHHHHHHHHHTCE
T ss_pred             EEEEeCCHHHHHHHHHHcCCc
Confidence            99999999986 677788875

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=97.48  E-value=0.00019  Score=63.66  Aligned_cols=47  Identities=32%  Similarity=0.393  Sum_probs=44.3

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      ++++|+|+|+|.+|+.+++.++.+|+ +|+++++++++++.++++|++
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~v~D~~~~~~~~~~~lGa~  217 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMGAE  217 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCGGGHHHHHHTTCE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHcCCE
Confidence            57899999999999999999999999 899999999999999999986

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=97.46  E-value=0.00017  Score=63.51  Aligned_cols=48  Identities=31%  Similarity=0.389  Sum_probs=44.8

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      ++++|+|+|+|.+|+.+++.++.+|+ +|+++++++++++.++++|+++
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~~~d~~~~~~~~~~~~Ga~~  218 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLGGKF  218 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTTCEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeE
Confidence            68999999999999999999999999 7999999999999998999864

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=97.41  E-value=0.00024  Score=62.40  Aligned_cols=48  Identities=27%  Similarity=0.376  Sum_probs=45.0

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      ++.+|+|+|+|.+|+.+++.++.+|+ +|+++++++++++.++++|+++
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~lGa~~  230 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGA-KTTGYDVRPEVAEQVRSVGAQW  230 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSGGGHHHHHHTTCEE
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeE
Confidence            67899999999999999999999999 8999999999999999998863

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=97.34  E-value=0.00033  Score=61.99  Aligned_cols=47  Identities=28%  Similarity=0.393  Sum_probs=44.6

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      ++.+|+|+|+|.+|+.+++.++.+|+ +|+++|+++++++.++++|++
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~~G~~  235 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGA-VVSATDVRPAAKEQVASLGAK  235 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSTTHHHHHHHTTCE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHcCCc
Confidence            56899999999999999999999999 999999999999999999986

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=97.31  E-value=0.0003  Score=61.39  Aligned_cols=48  Identities=31%  Similarity=0.385  Sum_probs=43.3

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      +++ ++|+|+|+|++|+++++.++.+|+ +|++++++++|++.+++++++
T Consensus       165 l~~-~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~~~r~~~~~~~~~~  212 (361)
T 1pjc_A          165 VKP-GKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGS  212 (361)
T ss_dssp             BCC-CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGG
T ss_pred             CCC-CEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhhCc
Confidence            444 899999999999999999999999 999999999999988877654

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=97.29  E-value=0.00054  Score=62.20  Aligned_cols=49  Identities=35%  Similarity=0.386  Sum_probs=46.1

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      ..+|++|+|+|.|.+|..+++.++.+|+ +|+++++++++.+.++++|++
T Consensus       271 ~l~GktV~IiG~G~IG~~~A~~lka~Ga-~Viv~d~~~~~~~~A~~~Ga~  319 (494)
T 3ce6_A          271 LIGGKKVLICGYGDVGKGCAEAMKGQGA-RVSVTEIDPINALQAMMEGFD  319 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCE
Confidence            6789999999999999999999999999 999999999999888888875

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=97.18  E-value=0.00079  Score=59.11  Aligned_cols=47  Identities=30%  Similarity=0.319  Sum_probs=43.0

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh-cCCC
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS-CVSS  241 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~-lg~~  241 (246)
                      ++++|+|+|+|.+|+.+++.++.+|+ +|+++++++++++.+++ +|++
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~~~~~l~~~~~~~g~~  214 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGA-TVTVLDINIDKLRQLDAEFCGR  214 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTTS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhcCCe
Confidence            57899999999999999999999999 99999999999988876 6765

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=96.97  E-value=0.0016  Score=56.85  Aligned_cols=47  Identities=28%  Similarity=0.302  Sum_probs=42.0

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh-cCCC
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS-CVSS  241 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~-lg~~  241 (246)
                      .+++|+|+|+|.+|+.+++.++.+|+ +|+++++++++++.+++ +|++
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~~~~~~~~~~~~~g~~  212 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMGA-QVTILDVNHKRLQYLDDVFGGR  212 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTTS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHhcCce
Confidence            35899999999999999999999999 99999999999888766 6654

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.95  E-value=0.001  Score=50.61  Aligned_cols=50  Identities=24%  Similarity=0.363  Sum_probs=42.2

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh-hcCCC
Q 025895          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM-SCVSS  241 (246)
Q Consensus       191 ~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~-~lg~~  241 (246)
                      ...++++|+|+|+|.+|...++.++..|+ +|+++++++++.+.++ +.|..
T Consensus        15 ~~~~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~g~~   65 (155)
T 2g1u_A           15 KKQKSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAFHRLNSEFSGF   65 (155)
T ss_dssp             --CCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGGGGSCTTCCSE
T ss_pred             cccCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHhcCCCc
Confidence            34567899999999999999999999999 9999999999888776 56653

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=96.76  E-value=0.0035  Score=52.16  Aligned_cols=51  Identities=22%  Similarity=0.239  Sum_probs=41.4

Q ss_pred             hhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCChhHHHHHhh
Q 025895          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       186 l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G-~~~vi~~~~~~~~~~~~~~  237 (246)
                      +.....+.++++||-+|+|. |..++.+++..+ ..++++++.+++.++.+++
T Consensus       104 i~~~~~~~~~~~VLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~  155 (277)
T 1o54_A          104 IAMMLDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAES  155 (277)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEECCcC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHH
Confidence            44566788999999999876 888888898854 3499999999998887765

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.72  E-value=0.0038  Score=46.56  Aligned_cols=47  Identities=17%  Similarity=0.149  Sum_probs=42.3

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      ..++|+|.|.|.+|...++.++..|. +|+++++++++.+.+++.|..
T Consensus         6 ~~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~~g~~   52 (140)
T 3fwz_A            6 ICNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRERGVR   52 (140)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTTCE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHcCCC
Confidence            34689999999999999999999999 999999999999988887764

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=96.68  E-value=0.0036  Score=44.50  Aligned_cols=45  Identities=20%  Similarity=0.097  Sum_probs=39.1

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCChhHHHHHhhcCC
Q 025895          195 GSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRGMSCVS  240 (246)
Q Consensus       195 ~~~VlI~Gag~~G~~ai~~a~~~G-~~~vi~~~~~~~~~~~~~~lg~  240 (246)
                      +.+|+|+|+|.+|...++.+...| . +|+++++++++.+.+...+.
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~-~v~~~~r~~~~~~~~~~~~~   50 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNY-SVTVADHDLAALAVLNRMGV   50 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSE-EEEEEESCHHHHHHHHTTTC
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHhCCC
Confidence            468999999999999999999999 6 89999999999888775553

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.63  E-value=0.0032  Score=48.97  Aligned_cols=46  Identities=22%  Similarity=0.359  Sum_probs=41.6

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCChhHHHHHhhcCCC
Q 025895          195 GSIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       195 ~~~VlI~Gag~~G~~ai~~a~~~-G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      +++|+|+|.|.+|...++.++.. |+ +|+++++++++.+.+++.|..
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~~~~~~~~~~g~~   85 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIREEAAQQHRSEGRN   85 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCHHHHHHHHHTTCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCHHHHHHHHHCCCC
Confidence            56899999999999999999998 99 899999999999988887765

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=96.53  E-value=0.0011  Score=49.78  Aligned_cols=61  Identities=10%  Similarity=0.015  Sum_probs=45.1

Q ss_pred             chhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHH-HhhcCCC
Q 025895          179 VPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR-GMSCVSS  241 (246)
Q Consensus       179 ~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~-~~~lg~~  241 (246)
                      +..++.++ +......+++|+|+|+|.+|...++.++..|+ +|+++++++++.+. +++++.+
T Consensus         6 ~sv~~~a~-~~~~~~~~~~v~iiG~G~iG~~~a~~l~~~g~-~v~v~~r~~~~~~~~a~~~~~~   67 (144)
T 3oj0_A            6 VSIPSIVY-DIVRKNGGNKILLVGNGMLASEIAPYFSYPQY-KVTVAGRNIDHVRAFAEKYEYE   67 (144)
T ss_dssp             CSHHHHHH-HHHHHHCCCEEEEECCSHHHHHHGGGCCTTTC-EEEEEESCHHHHHHHHHHHTCE
T ss_pred             ccHHHHHH-HHHHhccCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCHHHHHHHHHHhCCc
Confidence            34445544 22333348999999999999999999988999 59999999988765 4556643

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=96.51  E-value=0.0054  Score=51.75  Aligned_cols=48  Identities=33%  Similarity=0.326  Sum_probs=42.5

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      -.+++|+|+|.|.+|..+++.++..|+ +|++++++.++.+.++++|++
T Consensus       153 l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~  200 (293)
T 3d4o_A          153 IHGANVAVLGLGRVGMSVARKFAALGA-KVKVGARESDLLARIAEMGME  200 (293)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTSE
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHCCCe
Confidence            467899999999999999999999999 999999999887777677754

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.44  E-value=0.0056  Score=45.40  Aligned_cols=46  Identities=20%  Similarity=0.205  Sum_probs=40.6

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      ..+++|+|+|.+|...++.+...|. +|+++++++++.+.+++.|..
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~~~~~~~~~~~~~~   51 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKSKEKIELLEDEGFD   51 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTTCE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHCCCc
Confidence            3579999999999999999999999 899999999999888776653

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=96.31  E-value=0.0075  Score=54.49  Aligned_cols=48  Identities=35%  Similarity=0.378  Sum_probs=42.8

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      -.|++++|+|+|.+|...++.++..|+ +|+++++++.+.+.+...|++
T Consensus       263 L~GKtVvVtGaGgIG~aiA~~Laa~GA-~Viv~D~~~~~a~~Aa~~g~d  310 (488)
T 3ond_A          263 IAGKVAVVAGYGDVGKGCAAALKQAGA-RVIVTEIDPICALQATMEGLQ  310 (488)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHhCCc
Confidence            478999999999999999999999999 999999999888877766654

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=96.21  E-value=0.0097  Score=50.30  Aligned_cols=48  Identities=31%  Similarity=0.279  Sum_probs=42.0

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      -.+++|+|+|.|.+|..+++.++..|+ +|++++++.++.+.+.++|.+
T Consensus       155 l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~  202 (300)
T 2rir_A          155 IHGSQVAVLGLGRTGMTIARTFAALGA-NVKVGARSSAHLARITEMGLV  202 (300)
T ss_dssp             STTSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCE
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCCe
Confidence            367899999999999999999999999 999999999887766666653

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=96.18  E-value=0.012  Score=50.42  Aligned_cols=50  Identities=26%  Similarity=0.369  Sum_probs=40.0

Q ss_pred             hhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHhh
Q 025895          187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       187 ~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~-~~vi~~~~~~~~~~~~~~  237 (246)
                      .....++++++||-+|.|. |..++.+++..|. .+|++++.+++.++.+++
T Consensus        98 l~~l~~~~g~~VLDiG~G~-G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~  148 (336)
T 2b25_A           98 LSMMDINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKK  148 (336)
T ss_dssp             HHHHTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHH
T ss_pred             HHhcCCCCCCEEEEeCCCc-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Confidence            3455788999999998876 7778888887663 489999999988877765

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.15  E-value=0.006  Score=44.88  Aligned_cols=45  Identities=27%  Similarity=0.436  Sum_probs=38.7

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCC
Q 025895          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVS  240 (246)
Q Consensus       195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~  240 (246)
                      .++|+|+|+|.+|...++.+...|. +|+++++++++.+.+++.+.
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~-~v~~~d~~~~~~~~~~~~~~   50 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYASYAT   50 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHTTTTTCS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhCC
Confidence            4679999999999999999999998 89999999988877766554

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=96.11  E-value=0.012  Score=52.42  Aligned_cols=48  Identities=29%  Similarity=0.248  Sum_probs=42.4

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCC
Q 025895          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVS  240 (246)
Q Consensus       192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~  240 (246)
                      .-.|++|+|+|.|.+|..+++.++.+|+ +|+++++++.+...+...|+
T Consensus       217 ~L~GktV~ViG~G~IGk~vA~~Lra~Ga-~Viv~D~dp~ra~~A~~~G~  264 (435)
T 3gvp_A          217 MFGGKQVVVCGYGEVGKGCCAALKAMGS-IVYVTEIDPICALQACMDGF  264 (435)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTC
T ss_pred             eecCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEeCChhhhHHHHHcCC
Confidence            4578999999999999999999999999 89999999987776666664

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=95.95  E-value=0.017  Score=46.43  Aligned_cols=46  Identities=17%  Similarity=0.111  Sum_probs=39.5

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCC
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVS  240 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~  240 (246)
                      .+.+|||+|+ |.+|...+..+...|+ +|+++++++++.+.+.+.+.
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~   66 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGH-EPVAMVRNEEQGPELRERGA   66 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHTTC
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCC-eEEEEECChHHHHHHHhCCC
Confidence            4578999998 9999999999999999 99999999998887766554

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=95.91  E-value=0.017  Score=50.20  Aligned_cols=48  Identities=31%  Similarity=0.392  Sum_probs=41.8

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      -.|++|.|.|.|.+|+.+++.++.+|+ +|++.|.++++.+.++++|++
T Consensus       173 L~GktV~I~G~GnVG~~~A~~l~~~Ga-kVvvsD~~~~~~~~a~~~ga~  220 (355)
T 1c1d_A          173 LDGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTDTERVAHAVALGHT  220 (355)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEeCCccHHHHHHhcCCE
Confidence            478999999999999999999999999 999999988776666667764

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=95.87  E-value=0.0052  Score=50.62  Aligned_cols=47  Identities=17%  Similarity=0.215  Sum_probs=40.4

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCChhHHHHHhhcCCC
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~-G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      .++.+||.+|.|. |..+..+++.. +. +++++|.+++.++.+++.++.
T Consensus        84 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~-~v~~vD~s~~~~~~a~~~~~~  131 (269)
T 1p91_A           84 DKATAVLDIGCGE-GYYTHAFADALPEI-TTFGLDVSKVAIKAAAKRYPQ  131 (269)
T ss_dssp             TTCCEEEEETCTT-STTHHHHHHTCTTS-EEEEEESCHHHHHHHHHHCTT
T ss_pred             CCCCEEEEECCCC-CHHHHHHHHhCCCC-eEEEEeCCHHHHHHHHHhCCC
Confidence            5788999999987 88888999886 66 999999999999998877654

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=95.77  E-value=0.019  Score=51.24  Aligned_cols=48  Identities=29%  Similarity=0.331  Sum_probs=41.4

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCC
Q 025895          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVS  240 (246)
Q Consensus       192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~  240 (246)
                      .-.|++|+|+|.|.+|..+++.++.+|+ +|+++++++.+...+...|.
T Consensus       244 ~L~GKTVgVIG~G~IGr~vA~~lrafGa-~Viv~d~dp~~a~~A~~~G~  291 (464)
T 3n58_A          244 MMAGKVAVVCGYGDVGKGSAQSLAGAGA-RVKVTEVDPICALQAAMDGF  291 (464)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHTTC
T ss_pred             cccCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEeCCcchhhHHHhcCc
Confidence            4578999999999999999999999999 99999998877665555554

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=95.69  E-value=0.024  Score=47.41  Aligned_cols=48  Identities=25%  Similarity=0.245  Sum_probs=40.6

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-hhcCCC
Q 025895          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG-MSCVSS  241 (246)
Q Consensus       193 ~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~-~~lg~~  241 (246)
                      -+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++++.+ +++|..
T Consensus        27 L~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~~g~~   76 (273)
T 4fgs_A           27 LNAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEIGGG   76 (273)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTT
T ss_pred             hCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCC
Confidence            36789999988 8999999999999999 999999999988754 456544

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=95.64  E-value=0.038  Score=46.38  Aligned_cols=43  Identities=26%  Similarity=0.240  Sum_probs=37.6

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      -.+++++|+|+|++|.+++..+...|+++|++++++.+|.+.+
T Consensus       125 l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~l  167 (283)
T 3jyo_A          125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQAL  167 (283)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHH
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHH
Confidence            3578999999999999999999999997899999999887644

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=95.62  E-value=0.016  Score=49.14  Aligned_cols=50  Identities=18%  Similarity=0.217  Sum_probs=43.5

Q ss_pred             hhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhc
Q 025895          188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSC  238 (246)
Q Consensus       188 ~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~l  238 (246)
                      ...+++++++||.+|.|..++.++.+++..|+ +|++++.+++.++.+++.
T Consensus       116 ~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga-~V~gIDis~~~l~~Ar~~  165 (298)
T 3fpf_A          116 ALGRFRRGERAVFIGGGPLPLTGILLSHVYGM-RVNVVEIEPDIAELSRKV  165 (298)
T ss_dssp             HHTTCCTTCEEEEECCCSSCHHHHHHHHTTCC-EEEEEESSHHHHHHHHHH
T ss_pred             HHcCCCCcCEEEEECCCccHHHHHHHHHccCC-EEEEEECCHHHHHHHHHH
Confidence            35678999999999998878888888888898 999999999998888764

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=95.56  E-value=0.029  Score=45.81  Aligned_cols=42  Identities=24%  Similarity=0.220  Sum_probs=36.2

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       193 ~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      -.++++||+|+ +++|...++.+...|+ +|+++++++++++.+
T Consensus        10 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   52 (252)
T 3f1l_A           10 LNDRIILVTGASDGIGREAAMTYARYGA-TVILLGRNEEKLRQV   52 (252)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            35689999988 8999999988888999 899999999887654

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=95.44  E-value=0.034  Score=45.23  Aligned_cols=41  Identities=29%  Similarity=0.353  Sum_probs=35.7

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .++++||+|+ |++|...++.+...|+ +|+++++++++.+.+
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~-~V~~~~r~~~~~~~~   49 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGA-AVVVADINAEAAEAV   49 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHH
Confidence            4689999998 9999999998889999 899999999877654

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=95.43  E-value=0.031  Score=48.70  Aligned_cols=48  Identities=23%  Similarity=0.300  Sum_probs=41.0

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHH-HhhcCCC
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR-GMSCVSS  241 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~-~~~lg~~  241 (246)
                      -.+++|+|.|.|.+|..+++.+...|+ +|++.|++.++++. +.++|++
T Consensus       171 L~GktV~V~G~G~VG~~~A~~L~~~Ga-kVvv~D~~~~~l~~~a~~~ga~  219 (364)
T 1leh_A          171 LEGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDVNKAAVSAAVAEEGAD  219 (364)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCCE
T ss_pred             CCcCEEEEECchHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHcCCE
Confidence            467999999999999999999999999 89999999988774 4445653

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=95.40  E-value=0.034  Score=46.19  Aligned_cols=45  Identities=13%  Similarity=0.070  Sum_probs=37.8

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-hhcC
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG-MSCV  239 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~-~~lg  239 (246)
                      .+++++|+|+|++|.+++..+...|+ +|++++++.+|.+.+ ++++
T Consensus       118 ~~k~vlViGaGg~g~a~a~~L~~~G~-~V~v~~R~~~~~~~la~~~~  163 (271)
T 1nyt_A          118 PGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTVSRAEELAKLFA  163 (271)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHTG
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHhh
Confidence            56899999999999999999999997 999999999886544 3443

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=95.37  E-value=0.035  Score=46.33  Aligned_cols=42  Identities=24%  Similarity=0.225  Sum_probs=36.9

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~  236 (246)
                      .++++||+|+ |++|...++.+...|+ +|+++++++++.+.+.
T Consensus        15 ~gk~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~   57 (291)
T 3rd5_A           15 AQRTVVITGANSGLGAVTARELARRGA-TVIMAVRDTRKGEAAA   57 (291)
T ss_dssp             TTCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            5689999988 9999999998889999 9999999998877654

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=95.36  E-value=0.034  Score=49.51  Aligned_cols=48  Identities=27%  Similarity=0.347  Sum_probs=42.0

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      -.|++|+|+|.|.+|...++.++.+|+ +|+++++++.+...+...|+.
T Consensus       209 L~GktVgIiG~G~IG~~vA~~Lka~Ga-~Viv~D~~p~~a~~A~~~G~~  256 (436)
T 3h9u_A          209 IAGKTACVCGYGDVGKGCAAALRGFGA-RVVVTEVDPINALQAAMEGYQ  256 (436)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE
T ss_pred             ccCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCChhhhHHHHHhCCe
Confidence            468999999999999999999999999 999999999887766666653

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=95.36  E-value=0.027  Score=45.68  Aligned_cols=44  Identities=20%  Similarity=0.180  Sum_probs=37.8

Q ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895          192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       192 ~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~  236 (246)
                      ..++++|||+|+ |++|...+..+...|+ +|+++++++++++.+.
T Consensus        11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~   55 (249)
T 3f9i_A           11 DLTGKTSLITGASSGIGSAIARLLHKLGS-KVIISGSNEEKLKSLG   55 (249)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHH
Confidence            456789999988 9999999888888999 8999999998877554

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=95.36  E-value=0.046  Score=46.55  Aligned_cols=41  Identities=17%  Similarity=0.214  Sum_probs=35.4

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC---hhHHHH
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID---PKKFDR  234 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~---~~~~~~  234 (246)
                      .++++||+|+|++|.+++..+...|+++|+++.|+   .+|.+.
T Consensus       147 ~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~  190 (312)
T 3t4e_A          147 RGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVA  190 (312)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHH
Confidence            57899999999999999999999999889999999   555543

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=95.35  E-value=0.029  Score=46.44  Aligned_cols=46  Identities=24%  Similarity=0.186  Sum_probs=37.8

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh-hcCC
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM-SCVS  240 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~-~lg~  240 (246)
                      .++++||+|+ +++|...++.+...|+ +|+++++++++.+.+. +++.
T Consensus        29 ~~k~vlVTGas~GIG~aia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~   76 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGEATVRRLHADGL-GVVIADLAAEKGKALADELGN   76 (281)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCC
Confidence            4578999998 8999999888888999 8999999998876554 3443

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=95.35  E-value=0.037  Score=44.82  Aligned_cols=41  Identities=37%  Similarity=0.560  Sum_probs=35.3

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .++++||+|+ |++|...++.+...|+ +|+++++++++.+.+
T Consensus        10 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~   51 (254)
T 2wsb_A           10 DGACAAVTGAGSGIGLEICRAFAASGA-RLILIDREAAALDRA   51 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4578999998 9999999998888999 899999998876644

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=95.34  E-value=0.037  Score=45.18  Aligned_cols=46  Identities=22%  Similarity=0.284  Sum_probs=38.0

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh-hcCC
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM-SCVS  240 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~-~lg~  240 (246)
                      .++++||+|+ +++|...++.+...|+ +|+++++++++++.+. +++.
T Consensus         8 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~   55 (261)
T 3n74_A            8 EGKVALITGAGSGFGEGMAKRFAKGGA-KVVIVDRDKAGAERVAGEIGD   55 (261)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCC
Confidence            3578999998 8999999988889999 8999999998877554 3443

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=95.28  E-value=0.029  Score=46.64  Aligned_cols=40  Identities=23%  Similarity=0.246  Sum_probs=35.1

Q ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       195 ~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      ++++||+|+ |++|...++.+...|+ +|+++++++++++.+
T Consensus        28 ~k~vlITGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~   68 (286)
T 1xu9_A           28 GKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKV   68 (286)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            578999998 9999999998888999 899999999877654

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=95.26  E-value=0.031  Score=45.21  Aligned_cols=41  Identities=24%  Similarity=0.310  Sum_probs=35.8

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .++++||+|+ |++|...+..+...|+ +|+.+++++++++.+
T Consensus        13 ~~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   54 (247)
T 3i1j_A           13 KGRVILVTGAARGIGAAAARAYAAHGA-SVVLLGRTEASLAEV   54 (247)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEecCHHHHHHH
Confidence            4688999988 9999999998889999 899999999877654

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=95.26  E-value=0.039  Score=46.41  Aligned_cols=41  Identities=29%  Similarity=0.423  Sum_probs=36.0

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .++++||+|+ |++|...+..+...|+ +|+++++++++++.+
T Consensus        30 ~gk~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~   71 (301)
T 3tjr_A           30 DGRAAVVTGGASGIGLATATEFARRGA-RLVLSDVDQPALEQA   71 (301)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            5689999998 8999999998889999 899999999887654

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=95.23  E-value=0.024  Score=46.86  Aligned_cols=41  Identities=41%  Similarity=0.483  Sum_probs=36.0

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .|+++||+|+ +++|.+.++.+...|+ +|+.+++++++++.+
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~   49 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAES   49 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            4688999988 8999999999999999 999999999877544

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=95.23  E-value=0.04  Score=45.32  Aligned_cols=42  Identities=14%  Similarity=0.255  Sum_probs=36.0

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       193 ~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      -.++++||+|+ +++|...++.+...|+ +|+++++++++++.+
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   51 (264)
T 3ucx_A            9 LTDKVVVISGVGPALGTTLARRCAEQGA-DLVLAARTVERLEDV   51 (264)
T ss_dssp             TTTCEEEEESCCTTHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHH
Confidence            35689999988 8999999888888999 899999998877654

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=95.21  E-value=0.043  Score=45.37  Aligned_cols=41  Identities=24%  Similarity=0.344  Sum_probs=35.1

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .++++||+|+ |++|...++.+...|+ +|+++++++++.+.+
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~   72 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEEL   72 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECChHHHHHH
Confidence            3578999988 9999999998888999 899999998776544

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=95.20  E-value=0.044  Score=44.85  Aligned_cols=40  Identities=23%  Similarity=0.318  Sum_probs=34.7

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR  234 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~  234 (246)
                      .++++||+|+ |++|...++.+...|+ +|+++++++++.+.
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~   48 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELND   48 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            3578999998 8999999988888999 89999999887654

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=95.20  E-value=0.051  Score=39.52  Aligned_cols=44  Identities=23%  Similarity=0.410  Sum_probs=37.0

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh-cCC
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS-CVS  240 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~-lg~  240 (246)
                      .+|+|+|+|.+|...++.+...|. +|+++++++++.+.+.+ ++.
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~~~~   49 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEIDA   49 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHhcCc
Confidence            478999999999999999888998 89999999988876653 343

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=95.18  E-value=0.044  Score=45.20  Aligned_cols=41  Identities=22%  Similarity=0.352  Sum_probs=35.1

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .++++||+|+ |++|...++.+...|+ +|+++++++++.+.+
T Consensus        20 ~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   61 (267)
T 1vl8_A           20 RGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEA   61 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4678999998 9999999998888999 899999998876543

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=95.18  E-value=0.044  Score=45.03  Aligned_cols=41  Identities=22%  Similarity=0.329  Sum_probs=35.2

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .++++||+|+ |++|...++.+...|+ +|+++++++++.+.+
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   53 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEAS   53 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4678999988 9999999888888999 999999998876644

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=95.18  E-value=0.031  Score=46.64  Aligned_cols=41  Identities=17%  Similarity=0.132  Sum_probs=34.7

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .++++||+|+ |++|...++.+...|+ +|+++++++++.+.+
T Consensus        11 ~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~   52 (311)
T 3o26_A           11 KRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRDVTKGHEA   52 (311)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4688999998 8999998888888999 999999999876543

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=95.17  E-value=0.034  Score=45.67  Aligned_cols=41  Identities=29%  Similarity=0.374  Sum_probs=35.4

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .++++||+|+ |++|...+..+...|+ +|+++++++++++.+
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~   69 (262)
T 3rkr_A           28 SGQVAVVTGASRGIGAAIARKLGSLGA-RVVLTARDVEKLRAV   69 (262)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            4678999988 9999999888888999 899999999887654

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=95.16  E-value=0.044  Score=45.55  Aligned_cols=42  Identities=26%  Similarity=0.206  Sum_probs=36.1

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~  236 (246)
                      .++++||+|+ |++|...++.+...|+ +|+++++++++.+.+.
T Consensus        26 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~   68 (277)
T 4dqx_A           26 NQRVCIVTGGGSGIGRATAELFAKNGA-YVVVADVNEDAAVRVA   68 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            4578999988 8999999998889999 9999999998776543

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=95.16  E-value=0.034  Score=45.34  Aligned_cols=42  Identities=29%  Similarity=0.323  Sum_probs=36.2

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~  236 (246)
                      .++++||+|+ +++|...++.+...|+ +|+++++++++.+.+.
T Consensus         8 ~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~   50 (248)
T 3op4_A            8 EGKVALVTGASRGIGKAIAELLAERGA-KVIGTATSESGAQAIS   50 (248)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            4688999988 8999999999989999 9999999998776543

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=95.16  E-value=0.048  Score=45.53  Aligned_cols=43  Identities=19%  Similarity=0.020  Sum_probs=37.4

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~  236 (246)
                      .+++++|+|+|++|.+++..+...|+.+|+++.++.+|.+.+.
T Consensus       119 ~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la  161 (272)
T 3pwz_A          119 RNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALR  161 (272)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHH
T ss_pred             cCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence            5789999999999999999888999879999999998866543

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=95.16  E-value=0.045  Score=45.40  Aligned_cols=41  Identities=32%  Similarity=0.388  Sum_probs=35.2

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .++++||+|+ |++|...++.+...|+ +|+++++++++.+.+
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   51 (281)
T 3svt_A           10 QDRTYLVTGGGSGIGKGVAAGLVAAGA-SVMIVGRNPDKLAGA   51 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4688999988 8999999998888999 899999998876543

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=95.14  E-value=0.065  Score=43.49  Aligned_cols=51  Identities=22%  Similarity=0.315  Sum_probs=41.1

Q ss_pred             hhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCChhHHHHHhh
Q 025895          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       186 l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G-~~~vi~~~~~~~~~~~~~~  237 (246)
                      +.....++++++||-+|.|. |..+..+++..+ ..++++++.+++..+.+++
T Consensus        85 i~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~  136 (255)
T 3mb5_A           85 IVAYAGISPGDFIVEAGVGS-GALTLFLANIVGPEGRVVSYEIREDFAKLAWE  136 (255)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHH
T ss_pred             HHHhhCCCCCCEEEEecCCc-hHHHHHHHHHhCCCeEEEEEecCHHHHHHHHH
Confidence            44567788999999999875 788888888853 3499999999998887765

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=95.13  E-value=0.07  Score=43.93  Aligned_cols=51  Identities=22%  Similarity=0.302  Sum_probs=41.1

Q ss_pred             hhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCChhHHHHHhh
Q 025895          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       186 l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G-~~~vi~~~~~~~~~~~~~~  237 (246)
                      +.....++++++||-+|+| .|..+..+++..+ ..++++++.+++..+.+++
T Consensus        91 i~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~  142 (280)
T 1i9g_A           91 IVHEGDIFPGARVLEAGAG-SGALTLSLLRAVGPAGQVISYEQRADHAEHARR  142 (280)
T ss_dssp             HHHHTTCCTTCEEEEECCT-TSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEEccc-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Confidence            4456678899999999987 7888888888753 3499999999998887765

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=95.13  E-value=0.046  Score=45.31  Aligned_cols=40  Identities=20%  Similarity=0.271  Sum_probs=34.7

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR  234 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~  234 (246)
                      .++++||+|+ |++|...+..+...|+ +|+++++++++.+.
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~   61 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRT   61 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            3578999988 9999999998888999 89999999887654

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=95.12  E-value=0.047  Score=45.27  Aligned_cols=41  Identities=32%  Similarity=0.362  Sum_probs=35.2

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .++++||+|+ |++|...++.+...|+ +|+++++++++.+.+
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~   69 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLLEAGA-RVFICARDAEACADT   69 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            3578999998 8999999998888999 899999998876543

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=95.11  E-value=0.039  Score=45.81  Aligned_cols=41  Identities=22%  Similarity=0.189  Sum_probs=35.1

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .++++||+|+ |++|...++.+...|+ +|+++++++++.+.+
T Consensus        31 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~   72 (276)
T 3r1i_A           31 SGKRALITGASTGIGKKVALAYAEAGA-QVAVAARHSDALQVV   72 (276)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4579999988 8999999888888999 899999998876544

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=95.11  E-value=0.043  Score=46.35  Aligned_cols=47  Identities=17%  Similarity=0.086  Sum_probs=39.4

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-hhcCC
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG-MSCVS  240 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~-~~lg~  240 (246)
                      .+++++|+|+|++|.+++..+...|+.+|++++++.+|.+.+ ++++.
T Consensus       140 ~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~  187 (297)
T 2egg_A          140 DGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDE  187 (297)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCS
T ss_pred             CCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhh
Confidence            568999999999999999999999987999999998886544 44544

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=95.11  E-value=0.048  Score=45.05  Aligned_cols=41  Identities=29%  Similarity=0.378  Sum_probs=35.3

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .++++||+|+ |++|...++.+...|+ +|+++++++++++.+
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   61 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDEC   61 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            3678999998 9999999998889999 899999998876543

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=95.10  E-value=0.044  Score=45.53  Aligned_cols=41  Identities=32%  Similarity=0.370  Sum_probs=34.3

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .++++||+|+ +++|...+..+...|+ +|+++++++++.+.+
T Consensus        23 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~   64 (279)
T 3sju_A           23 RPQTAFVTGVSSGIGLAVARTLAARGI-AVYGCARDAKNVSAA   64 (279)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4678999988 8999998888888999 899999998876644

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=95.08  E-value=0.05  Score=44.55  Aligned_cols=42  Identities=29%  Similarity=0.278  Sum_probs=36.0

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~  236 (246)
                      .++++||+|+ |++|...+..+...|+ +|+++++++++.+.+.
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~   53 (263)
T 3ak4_A           11 SGRKAIVTGGSKGIGAAIARALDKAGA-TVAIADLDVMAAQAVV   53 (263)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            3678999988 9999999998888999 9999999988776543

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=95.08  E-value=0.05  Score=44.20  Aligned_cols=40  Identities=33%  Similarity=0.404  Sum_probs=34.4

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR  234 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~  234 (246)
                      .++++||+|+ |++|...+..+...|+ +|+++++++++.+.
T Consensus        12 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~   52 (260)
T 3awd_A           12 DNRVAIVTGGAQNIGLACVTALAEAGA-RVIIADLDEAMATK   52 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            3578999988 9999999998888999 99999999876543

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=95.04  E-value=0.032  Score=46.48  Aligned_cols=42  Identities=29%  Similarity=0.340  Sum_probs=34.8

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~  236 (246)
                      .++++||+|+ |++|...++.+...|+ +|+++++++++.+.+.
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~   74 (281)
T 4dry_A           32 EGRIALVTGGGTGVGRGIAQALSAEGY-SVVITGRRPDVLDAAA   74 (281)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            5688999988 8999999888888999 8999999998766543

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=95.02  E-value=0.052  Score=44.82  Aligned_cols=42  Identities=26%  Similarity=0.261  Sum_probs=36.1

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~  236 (246)
                      .++++||+|+ |++|...++.+...|+ +|+++++++++.+.+.
T Consensus         8 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~   50 (270)
T 1yde_A            8 AGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALE   50 (270)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            4688999988 9999999999889999 8999999988776543

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=95.01  E-value=0.052  Score=45.21  Aligned_cols=42  Identities=19%  Similarity=0.260  Sum_probs=36.0

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~  236 (246)
                      .++++||+|+ +++|...++.+...|+ +|+++++++++.+.+.
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~   69 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAADGV-TVGALGRTRTEVEEVA   69 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            4678999988 8999999998888999 9999999998776543

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=94.99  E-value=0.038  Score=45.43  Aligned_cols=41  Identities=27%  Similarity=0.226  Sum_probs=35.5

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .++++||+|+ |++|...++.+...|+ +|+++++++++.+.+
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   50 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFARAGA-NVAVAGRSTADIDAC   50 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4688999988 8999999998889999 999999999876643

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=94.99  E-value=0.038  Score=45.54  Aligned_cols=41  Identities=27%  Similarity=0.361  Sum_probs=35.5

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .++++||+|+ +++|...++.+...|+ +|+++++++++++.+
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   60 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAGA-RLVLSGRDVSELDAA   60 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4578999988 8999999999889999 899999998876644

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=94.98  E-value=0.081  Score=45.11  Aligned_cols=42  Identities=14%  Similarity=0.193  Sum_probs=36.0

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC---hhHHHHH
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID---PKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~---~~~~~~~  235 (246)
                      .++++||+|+|++|.+++..+...|+++|+++.|+   .+|.+.+
T Consensus       153 ~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~l  197 (315)
T 3tnl_A          153 IGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKT  197 (315)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHH
T ss_pred             cCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHH
Confidence            57899999999999999999999999889999999   6665543

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=94.98  E-value=0.061  Score=45.12  Aligned_cols=43  Identities=23%  Similarity=0.213  Sum_probs=37.8

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~  236 (246)
                      .+++++|+|+|++|.+++..+...|+++|+++.|+.+|.+.+.
T Consensus       121 ~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La  163 (282)
T 3fbt_A          121 KNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIY  163 (282)
T ss_dssp             TTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHC
T ss_pred             cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence            5789999999999999999999999988999999998876543

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=94.95  E-value=0.056  Score=44.56  Aligned_cols=41  Identities=20%  Similarity=0.270  Sum_probs=35.2

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .++++||+|+ |++|...+..+...|+ +|+++++++++.+.+
T Consensus        30 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~   71 (272)
T 1yb1_A           30 TGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEET   71 (272)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEEcCHHHHHHH
Confidence            4578999998 9999999998888999 899999998776543

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=94.93  E-value=0.044  Score=44.83  Aligned_cols=40  Identities=25%  Similarity=0.338  Sum_probs=34.7

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR  234 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~  234 (246)
                      .++++||+|+ |++|...++.+...|+ +|+++++++++.+.
T Consensus        13 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~   53 (260)
T 2zat_A           13 ENKVALVTASTDGIGLAIARRLAQDGA-HVVVSSRKQENVDR   53 (260)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            4688999988 9999999998888999 99999999877654

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=94.92  E-value=0.044  Score=45.26  Aligned_cols=46  Identities=24%  Similarity=0.345  Sum_probs=37.6

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh-hcCC
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM-SCVS  240 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~-~lg~  240 (246)
                      .++++||+|+ |++|...++.+...|+ +|+++++++++++.+. +++.
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~   57 (271)
T 3tzq_B           10 ENKVAIITGACGGIGLETSRVLARAGA-RVVLADLPETDLAGAAASVGR   57 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSCHHHHHHHHCT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCC
Confidence            4688999988 8999999998889999 8999999988766543 3444

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=94.92  E-value=0.041  Score=45.06  Aligned_cols=41  Identities=24%  Similarity=0.310  Sum_probs=35.1

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .++++||+|+ |++|...++.+...|+ +|+++++++++.+.+
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   52 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLKSEGAEAV   52 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4678999988 8999998888888899 899999998876644

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=94.86  E-value=0.085  Score=44.20  Aligned_cols=43  Identities=12%  Similarity=0.106  Sum_probs=37.1

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~  236 (246)
                      .+++++|+|+|++|.+.+..+...|+.+|+++.++.+|.+.+.
T Consensus       125 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la  167 (281)
T 3o8q_A          125 KGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLA  167 (281)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHH
T ss_pred             cCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHH
Confidence            5789999999999999998888899779999999998866443

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=94.85  E-value=0.054  Score=44.86  Aligned_cols=41  Identities=12%  Similarity=0.112  Sum_probs=35.2

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .++++||+|+ +++|...++.+...|+ +|+++++++++.+.+
T Consensus        26 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   67 (277)
T 4fc7_A           26 RDKVAFITGGGSGIGFRIAEIFMRHGC-HTVIASRSLPRVLTA   67 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4689999988 8999999998889999 999999998776543

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=94.82  E-value=0.061  Score=44.89  Aligned_cols=41  Identities=17%  Similarity=0.258  Sum_probs=35.0

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .++++||+|+ |++|...+..+...|+ +|+++++++++.+.+
T Consensus        17 ~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~   58 (303)
T 1yxm_A           17 QGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSA   58 (303)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4578999998 9999999988888999 899999998776543

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=94.82  E-value=0.043  Score=45.39  Aligned_cols=41  Identities=24%  Similarity=0.221  Sum_probs=35.2

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .++++||+|+ +++|...+..+...|+ +|+++++++++.+.+
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~   68 (270)
T 3ftp_A           27 DKQVAIVTGASRGIGRAIALELARRGA-MVIGTATTEAGAEGI   68 (270)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4578999988 8999999988888999 999999998876544

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=94.74  E-value=0.051  Score=44.83  Aligned_cols=47  Identities=26%  Similarity=0.175  Sum_probs=38.4

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh-hcCCC
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM-SCVSS  241 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~-~lg~~  241 (246)
                      .++++||+|+ |++|...++.+...|+ +|+++++++++++.+. +++.+
T Consensus        26 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~   74 (266)
T 3grp_A           26 TGRKALVTGATGGIGEAIARCFHAQGA-IVGLHGTREDKLKEIAADLGKD   74 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCSS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCc
Confidence            4688999988 8999999999989999 9999999998876543 45543

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=94.74  E-value=0.067  Score=44.59  Aligned_cols=41  Identities=12%  Similarity=0.130  Sum_probs=35.1

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .++++||+|+ |++|...+..+...|+ +|+++++++++.+.+
T Consensus        25 ~~k~vlITGasggiG~~la~~L~~~G~-~V~~~~r~~~~~~~~   66 (302)
T 1w6u_A           25 QGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKAT   66 (302)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4578999998 9999999998888999 899999998876543

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=94.72  E-value=0.055  Score=44.10  Aligned_cols=41  Identities=24%  Similarity=0.310  Sum_probs=34.9

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .++++||+|+ |++|...++.+...|+ +|+++++++++.+.+
T Consensus        11 ~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~   52 (265)
T 2o23_A           11 KGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNSGGEAQ   52 (265)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSSHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCcHhHHHH
Confidence            4578999998 9999999999889999 899999988766543

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=94.70  E-value=0.077  Score=44.19  Aligned_cols=44  Identities=18%  Similarity=0.097  Sum_probs=38.6

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcC
Q 025895          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCV  239 (246)
Q Consensus       195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg  239 (246)
                      +++++|+|+|++|.+++..+...|. +|+++.|+.+|.+.+.+++
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~-~v~V~nRt~~ka~~la~~~  161 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGL-QVSVLNRSSRGLDFFQRLG  161 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCTTHHHHHHHT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCC
Confidence            7899999999999999999999995 9999999999877655655

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=94.70  E-value=0.044  Score=45.54  Aligned_cols=46  Identities=30%  Similarity=0.401  Sum_probs=37.5

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh-hcCC
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM-SCVS  240 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~-~lg~  240 (246)
                      .++++||+|+ |++|...++.+...|+ +|+++++++++.+.+. +++.
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~   75 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLADEGC-HVLCADIDGDAADAAATKIGC   75 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHCS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCC
Confidence            4678999988 8999999888888999 9999999988776543 3443

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=94.70  E-value=0.045  Score=44.30  Aligned_cols=40  Identities=25%  Similarity=0.347  Sum_probs=34.4

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR  234 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~  234 (246)
                      .++++||+|+ |++|...+..+...|+ +|+++++++++.+.
T Consensus        10 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~   50 (255)
T 1fmc_A           10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANH   50 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHH
Confidence            3578999988 9999999998888999 89999999877653

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=94.69  E-value=0.049  Score=44.84  Aligned_cols=41  Identities=24%  Similarity=0.274  Sum_probs=34.9

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .++++||+|+ +++|...++.+...|+ +|+++++++++.+.+
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   50 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSLVAEGA-NVLINGRREENVNET   50 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4578999988 8999999988888999 899999998876543

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=94.67  E-value=0.077  Score=44.21  Aligned_cols=48  Identities=19%  Similarity=0.079  Sum_probs=39.2

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-hhcC
Q 025895          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG-MSCV  239 (246)
Q Consensus       192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~-~~lg  239 (246)
                      ...+.+++|+|+|+.+.+++..+...|+.+|+++.|+.+|.+.+ .+++
T Consensus       116 ~~~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~  164 (271)
T 1npy_A          116 LNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYG  164 (271)
T ss_dssp             CCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHT
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcC
Confidence            34567899999999999999999999988899999998875544 4444

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=94.66  E-value=0.071  Score=44.52  Aligned_cols=41  Identities=24%  Similarity=0.263  Sum_probs=35.4

Q ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~G-ag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      +++++||+| +|++|.+.+..+...|+ +|+++++++++.+.+
T Consensus       118 ~gk~vlVtGaaGGiG~aia~~L~~~G~-~V~i~~R~~~~~~~l  159 (287)
T 1lu9_A          118 KGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAA  159 (287)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEECCHHHHHHH
Confidence            578999999 59999999999999999 799999998876644

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=94.64  E-value=0.042  Score=46.12  Aligned_cols=41  Identities=24%  Similarity=0.226  Sum_probs=35.3

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .++++||+|+ |++|...++.+...|+ +|+++++++++++.+
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~   81 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAGA-NVAVAARSPRELSSV   81 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            4678999988 8999999998889999 999999998876543

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=94.62  E-value=0.051  Score=45.03  Aligned_cols=43  Identities=26%  Similarity=0.156  Sum_probs=35.5

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       193 ~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~  236 (246)
                      ..++++||+|+ +++|...+..+...|+ +|+++++++++++.+.
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~   69 (272)
T 4dyv_A           26 TGKKIAIVTGAGSGVGRAVAVALAGAGY-GVALAGRRLDALQETA   69 (272)
T ss_dssp             --CCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            34678999988 8999999988888999 8999999988876543

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=94.60  E-value=0.044  Score=45.36  Aligned_cols=41  Identities=34%  Similarity=0.468  Sum_probs=35.3

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .++++||+|+ |++|...++.+...|+ +|+++++++++.+.+
T Consensus        25 ~gk~~lVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~   66 (271)
T 4ibo_A           25 GGRTALVTGSSRGLGRAMAEGLAVAGA-RILINGTDPSRVAQT   66 (271)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4578999988 8999999998889999 999999998876544

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=94.59  E-value=0.053  Score=45.52  Aligned_cols=41  Identities=20%  Similarity=0.238  Sum_probs=35.2

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .++++||+|+ |++|...++.+...|+ +|+++++++++++.+
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~   66 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEET   66 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4578999988 9999999998888999 899999998876544

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=94.54  E-value=0.083  Score=43.34  Aligned_cols=41  Identities=22%  Similarity=0.227  Sum_probs=34.7

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .++++||+|+ |++|...++.+...|+ +|+++++++++.+.+
T Consensus        15 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~   56 (278)
T 2bgk_A           15 QDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKV   56 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCChhHHHHH
Confidence            4578999998 9999999988888999 899999988766543

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=94.51  E-value=0.059  Score=44.04  Aligned_cols=40  Identities=20%  Similarity=0.193  Sum_probs=34.5

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR  234 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~  234 (246)
                      .++++||+|+ |++|...++.+...|+ +|+++++++++.+.
T Consensus        13 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~   53 (266)
T 1xq1_A           13 KAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNE   53 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            3578999988 9999999998888999 99999999877654

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=94.46  E-value=0.052  Score=44.82  Aligned_cols=41  Identities=15%  Similarity=0.205  Sum_probs=35.3

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .++++||+|+ |++|...+..+...|+ +|+++++++++++.+
T Consensus        15 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   56 (266)
T 3p19_A           15 MKKLVVITGASSGIGEAIARRFSEEGH-PLLLLARRVERLKAL   56 (266)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCHHHHHTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHh
Confidence            4578999998 8999999998889999 899999998876644

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=94.42  E-value=0.043  Score=45.54  Aligned_cols=41  Identities=34%  Similarity=0.404  Sum_probs=34.7

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .++++||+|+ +++|...++.+...|+ +|+++++++++.+.+
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~   73 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAGAGA-HVILHGVKPGSTAAV   73 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSTTTTHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHH
Confidence            4688999988 8999999998889999 899999988765543

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=94.42  E-value=0.061  Score=44.33  Aligned_cols=41  Identities=17%  Similarity=0.099  Sum_probs=34.1

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcC-ChhHHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~-~~~~~~~~  235 (246)
                      .++++||+|+ |++|...+..+...|+ +|+++++ ++++.+.+
T Consensus        10 ~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~   52 (276)
T 1mxh_A           10 ECPAAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHSEGAAQRL   52 (276)
T ss_dssp             -CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHH
Confidence            3578999988 8999999988888999 8999999 87766544

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=94.40  E-value=0.083  Score=43.73  Aligned_cols=42  Identities=26%  Similarity=0.298  Sum_probs=33.7

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~  236 (246)
                      .++++||+|+ +++|...++.+...|+ +|++++++++..+.+.
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~   72 (273)
T 3uf0_A           30 AGRTAVVTGAGSGIGRAIAHGYARAGA-HVLAWGRTDGVKEVAD   72 (273)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCHHHHHHHHH
Confidence            4688999988 8999999988889999 8999987765444433

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=94.39  E-value=0.05  Score=44.60  Aligned_cols=43  Identities=26%  Similarity=0.365  Sum_probs=37.1

Q ss_pred             CCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 025895          191 KVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR  234 (246)
Q Consensus       191 ~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~  234 (246)
                      ++-.|+++||+|+ +++|.+.++.+...|+ +|+++++++++++.
T Consensus         7 dlf~GK~alVTGas~GIG~aia~~la~~Ga-~Vv~~~~~~~~~~~   50 (242)
T 4b79_A            7 DIYAGQQVLVTGGSSGIGAAIAMQFAELGA-EVVALGLDADGVHA   50 (242)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTSTTS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHhh
Confidence            3447899999988 8999999999999999 99999998877653

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=94.36  E-value=0.082  Score=43.02  Aligned_cols=40  Identities=23%  Similarity=0.151  Sum_probs=33.9

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 025895          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (246)
Q Consensus       193 ~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~  233 (246)
                      -.++++||+|+ |++|...++.+...|+ +|++++++++..+
T Consensus        17 ~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~   57 (249)
T 1o5i_A           17 IRDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNEELLK   57 (249)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHH
Confidence            45689999998 9999999988888999 8999999875543

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=94.35  E-value=0.074  Score=45.12  Aligned_cols=46  Identities=26%  Similarity=0.476  Sum_probs=39.4

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      .+.+|.|+|.|.+|...++.++..|+ +|++++++.++ +.+.++|++
T Consensus       141 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~-~~~~~~g~~  186 (307)
T 1wwk_A          141 EGKTIGIIGFGRIGYQVAKIANALGM-NILLYDPYPNE-ERAKEVNGK  186 (307)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCH-HHHHHTTCE
T ss_pred             CCceEEEEccCHHHHHHHHHHHHCCC-EEEEECCCCCh-hhHhhcCcc
Confidence            56899999999999999999999999 99999998877 555666653

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=94.34  E-value=0.098  Score=43.26  Aligned_cols=34  Identities=29%  Similarity=0.342  Sum_probs=30.0

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcC
Q 025895          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI  227 (246)
Q Consensus       193 ~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~  227 (246)
                      -.++++||+|+ +++|...++.+...|+ +|+++++
T Consensus        13 l~gk~~lVTGas~gIG~a~a~~la~~G~-~V~~~~r   47 (280)
T 3pgx_A           13 LQGRVAFITGAARGQGRSHAVRLAAEGA-DIIACDI   47 (280)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEec
Confidence            35689999988 8999999998889999 8999987

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=94.19  E-value=0.1  Score=43.96  Aligned_cols=42  Identities=31%  Similarity=0.318  Sum_probs=35.6

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       193 ~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      -++.+|||+|+ |.+|...+..+...|+ +|++++++.++.+.+
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~   51 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARSASKLANL   51 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCcccHHHH
Confidence            45678999998 9999999988888998 999999988776544

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=94.16  E-value=0.074  Score=44.19  Aligned_cols=42  Identities=17%  Similarity=0.092  Sum_probs=36.1

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~  236 (246)
                      .+++++|+|+|++|.+++..+...|. +|++++++.+|.+.+.
T Consensus       118 ~~~~vlvlGaGg~g~a~a~~L~~~G~-~v~v~~R~~~~a~~l~  159 (272)
T 1p77_A          118 PNQHVLILGAGGATKGVLLPLLQAQQ-NIVLANRTFSKTKELA  159 (272)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTTC-EEEEEESSHHHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            56899999999999999888888996 9999999988866543

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=94.12  E-value=0.12  Score=42.77  Aligned_cols=34  Identities=29%  Similarity=0.240  Sum_probs=30.4

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      .++++||+|+ +++|...++.+...|+ +|++++++
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~   43 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDIC   43 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEccc
Confidence            4689999988 8999999998889999 89999887

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=94.08  E-value=0.052  Score=44.79  Aligned_cols=41  Identities=17%  Similarity=0.106  Sum_probs=36.2

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .+ +++|+|+|.+|.+++..+...|+++|++++++.+|.+.+
T Consensus       108 ~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~l  148 (253)
T 3u62_A          108 KE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKAL  148 (253)
T ss_dssp             CS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTC
T ss_pred             CC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence            45 899999999999999999999998899999999886654

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=94.07  E-value=0.081  Score=43.90  Aligned_cols=40  Identities=23%  Similarity=0.220  Sum_probs=33.7

Q ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       195 ~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      ++++||+|+ |++|...+..+...|+ +|+++++++++.+.+
T Consensus        44 ~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~   84 (285)
T 2c07_A           44 NKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSV   84 (285)
T ss_dssp             SCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHH
Confidence            578999988 9999999888888899 899998888776543

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=94.07  E-value=0.082  Score=44.11  Aligned_cols=41  Identities=22%  Similarity=0.165  Sum_probs=34.8

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEc-CChhHHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID-IDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~-~~~~~~~~~  235 (246)
                      .++++||+|+ +++|...++.+...|+ +|++++ +++++.+.+
T Consensus         8 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~r~~~~~~~~   50 (291)
T 1e7w_A            8 TVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANAL   50 (291)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHH
Confidence            3578999988 8999999999889999 899999 888776544

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=94.04  E-value=0.12  Score=42.80  Aligned_cols=40  Identities=23%  Similarity=0.344  Sum_probs=32.9

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcC-ChhHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFDR  234 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~-~~~~~~~  234 (246)
                      .++++||+|+ |++|...++.+...|+ +|+++++ ++++.+.
T Consensus        24 ~~k~~lVTGas~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~   65 (281)
T 3v2h_A           24 MTKTAVITGSTSGIGLAIARTLAKAGA-NIVLNGFGAPDEIRT   65 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEECCCCHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHH
Confidence            3578999988 8999999998889999 8999988 5555443

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=94.03  E-value=0.12  Score=42.48  Aligned_cols=34  Identities=29%  Similarity=0.383  Sum_probs=30.3

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      .++++||+|+ +++|...++.+...|+ +|++++++
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   46 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGA-DIIAVDLC   46 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEecc
Confidence            4689999988 8999999988889999 89999876

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=94.02  E-value=0.08  Score=43.32  Aligned_cols=41  Identities=27%  Similarity=0.376  Sum_probs=34.9

Q ss_pred             CCCEEEEECC-C-HHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGL-G-TVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g-~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .++++||+|+ | ++|...+..+...|+ +|+++++++++.+.+
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~   63 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRLGET   63 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCCHHHHHHH
Confidence            4688999998 7 799998888888999 899999998876544

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=94.01  E-value=0.1  Score=42.89  Aligned_cols=47  Identities=28%  Similarity=0.253  Sum_probs=38.1

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCh--hHHHHHhhcCCC
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP--KKFDRGMSCVSS  241 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~--~~~~~~~~lg~~  241 (246)
                      .|+++||+|+ +++|.+.++.+-..|+ +|+++++++  +..+.+++.|.+
T Consensus         8 ~GKvalVTGas~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~g~~   57 (247)
T 4hp8_A            8 EGRKALVTGANTGLGQAIAVGLAAAGA-EVVCAARRAPDETLDIIAKDGGN   57 (247)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHTTCC
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHcCC-EEEEEeCCcHHHHHHHHHHhCCc
Confidence            3688999988 8999999999999999 899998875  345666666654

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=93.99  E-value=0.13  Score=42.67  Aligned_cols=34  Identities=29%  Similarity=0.356  Sum_probs=30.3

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      .++++||+|+ +++|...++.+...|+ +|++++++
T Consensus        10 ~~k~~lVTGas~gIG~aia~~la~~G~-~V~~~~~~   44 (286)
T 3uve_A           10 EGKVAFVTGAARGQGRSHAVRLAQEGA-DIIAVDIC   44 (286)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEecc
Confidence            4689999998 8999999998889999 89999876

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=93.97  E-value=0.13  Score=38.52  Aligned_cols=40  Identities=13%  Similarity=0.049  Sum_probs=33.1

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC-hhHHHHH
Q 025895          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID-PKKFDRG  235 (246)
Q Consensus       195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~-~~~~~~~  235 (246)
                      .++++|.|.|.+|...++.+...|. +|++++++ +++.+.+
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~-~V~vid~~~~~~~~~~   43 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPEDDIKQL   43 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEECCChHHHHHH
Confidence            4678999999999999999999998 89999997 4554444

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=93.96  E-value=0.069  Score=44.40  Aligned_cols=40  Identities=20%  Similarity=0.162  Sum_probs=33.4

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCh-hHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP-KKFDR  234 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~-~~~~~  234 (246)
                      .++++||+|+ |++|...++.+...|+ +|+++++++ ++.+.
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~   63 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKLHQTGY-RVVIHYHNSAEAAVS   63 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHHTC-EEEEEESSCHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-eEEEEeCCchHHHHH
Confidence            3578999988 8999999888888999 899999987 66543

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=93.90  E-value=0.089  Score=44.83  Aligned_cols=41  Identities=22%  Similarity=0.165  Sum_probs=34.9

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEc-CChhHHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID-IDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~-~~~~~~~~~  235 (246)
                      .++++||+|+ |++|...++.+...|+ +|++++ +++++.+.+
T Consensus        45 ~~k~~lVTGas~GIG~aia~~La~~G~-~Vv~~~~r~~~~~~~~   87 (328)
T 2qhx_A           45 TVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANAL   87 (328)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHH
Confidence            3578999988 9999999999989999 899998 888776644

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=93.89  E-value=0.14  Score=42.27  Aligned_cols=33  Identities=33%  Similarity=0.437  Sum_probs=29.6

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcC
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI  227 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~  227 (246)
                      .++++||+|+ +++|...++.+...|+ +|+++++
T Consensus        10 ~~k~~lVTGas~GIG~a~a~~la~~G~-~V~~~~r   43 (277)
T 3tsc_A           10 EGRVAFITGAARGQGRAHAVRMAAEGA-DIIAVDI   43 (277)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEec
Confidence            4689999988 8999999998889999 8999987

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=93.84  E-value=0.11  Score=43.50  Aligned_cols=41  Identities=20%  Similarity=0.217  Sum_probs=33.8

Q ss_pred             CCCEEEEECC-C--HHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGL-G--TVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g--~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .++++||+|+ |  ++|...++.+...|+ +|++++++++..+.+
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~   72 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGA-EVALTYLSETFKKRV   72 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCC-EEEEEeCChHHHHHH
Confidence            4689999988 5  999998888888999 899999997655443

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=93.77  E-value=0.1  Score=42.64  Aligned_cols=40  Identities=20%  Similarity=0.194  Sum_probs=33.1

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcC-ChhHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFDR  234 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~-~~~~~~~  234 (246)
                      .++++||+|+ |++|...+..+...|+ +|+++++ ++++.+.
T Consensus        20 ~~k~vlItGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~   61 (274)
T 1ja9_A           20 AGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEE   61 (274)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCchHHHHH
Confidence            3578999988 9999999988888999 8999888 6666543

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=93.71  E-value=0.15  Score=42.65  Aligned_cols=34  Identities=26%  Similarity=0.341  Sum_probs=30.2

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      .++++||+|+ +++|...++.+...|+ +|++++++
T Consensus        27 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~   61 (299)
T 3t7c_A           27 EGKVAFITGAARGQGRSHAITLAREGA-DIIAIDVC   61 (299)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEecc
Confidence            4689999988 8999999998889999 89999876

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=93.65  E-value=0.11  Score=42.75  Aligned_cols=39  Identities=21%  Similarity=0.199  Sum_probs=31.7

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCC-hhHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID-PKKFD  233 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~-~~~~~  233 (246)
                      .++++||+|+ |++|...++.+...|+ +|++++++ +++.+
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~   68 (271)
T 4iin_A           28 TGKNVLITGASKGIGAEIAKTLASMGL-KVWINYRSNAEVAD   68 (271)
T ss_dssp             SCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHH
Confidence            4678999988 8999998888888999 89988884 44433

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=93.64  E-value=0.16  Score=41.94  Aligned_cols=34  Identities=24%  Similarity=0.168  Sum_probs=30.5

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      .++++||+|+ +++|...++.+...|+ +|++++++
T Consensus         9 ~~k~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~   43 (281)
T 3s55_A            9 EGKTALITGGARGMGRSHAVALAEAGA-DIAICDRC   43 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCC
Confidence            4689999988 8999999999999999 89999986

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=93.63  E-value=0.16  Score=42.04  Aligned_cols=40  Identities=23%  Similarity=0.312  Sum_probs=32.8

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcC-ChhHHH
Q 025895          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFD  233 (246)
Q Consensus       193 ~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~-~~~~~~  233 (246)
                      -.++++||+|+ |++|...++.+...|+ +|+++++ ++++.+
T Consensus        27 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~   68 (280)
T 4da9_A           27 KARPVAIVTGGRRGIGLGIARALAASGF-DIAITGIGDAEGVA   68 (280)
T ss_dssp             CCCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCHHHHH
T ss_pred             cCCCEEEEecCCCHHHHHHHHHHHHCCC-eEEEEeCCCHHHHH
Confidence            35688999988 8999999998889999 8988875 665544

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=93.57  E-value=0.11  Score=42.51  Aligned_cols=36  Identities=11%  Similarity=0.111  Sum_probs=30.2

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      .++++||+|+ +++|...++.+...|+ +|++++++..
T Consensus        10 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~   46 (262)
T 3ksu_A           10 KNKVIVIAGGIKNLGALTAKTFALESV-NLVLHYHQAK   46 (262)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHTTSSC-EEEEEESCGG
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecCcc
Confidence            4688999988 8999999988888999 8988866543

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=93.56  E-value=0.14  Score=42.87  Aligned_cols=42  Identities=19%  Similarity=0.198  Sum_probs=33.6

Q ss_pred             CCCCEEEEECC-CH--HHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          193 EPGSIVAVFGL-GT--VGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       193 ~~~~~VlI~Ga-g~--~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      -.++++||+|+ |.  +|...++.+...|+ +|++++++++..+.+
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~   73 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKKRV   73 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHH
Confidence            35689999987 66  99999888888999 899999987544433

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=93.50  E-value=0.064  Score=43.79  Aligned_cols=41  Identities=7%  Similarity=0.039  Sum_probs=33.7

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcC---CCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAG---ASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G---~~~vi~~~~~~~~~~~~  235 (246)
                      .++++||+|+ |++|...++.+...|   + +|+++++++++.+.+
T Consensus        20 ~~k~vlITGasggIG~~la~~L~~~G~~~~-~V~~~~r~~~~~~~~   64 (267)
T 1sny_A           20 HMNSILITGCNRGLGLGLVKALLNLPQPPQ-HLFTTCRNREQAKEL   64 (267)
T ss_dssp             CCSEEEESCCSSHHHHHHHHHHHTSSSCCS-EEEEEESCTTSCHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHhcCCCCc-EEEEEecChhhhHHH
Confidence            4578999988 999999998888889   7 999999987654433

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=93.50  E-value=0.15  Score=46.04  Aligned_cols=48  Identities=33%  Similarity=0.382  Sum_probs=40.6

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCC
Q 025895          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVS  240 (246)
Q Consensus       192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~  240 (246)
                      --.|++|+|+|.|.+|..+++.++.+|+ +|++++++..+...+...|+
T Consensus       254 ~l~GktVgIIG~G~IG~~vA~~l~~~G~-~Viv~d~~~~~~~~a~~~g~  301 (479)
T 1v8b_A          254 LISGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDPICAIQAVMEGF  301 (479)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHHHHHHHHTTTC
T ss_pred             ccCCCEEEEEeeCHHHHHHHHHHHhCcC-EEEEEeCChhhHHHHHHcCC
Confidence            3468899999999999999999999999 99999999987644545554

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=93.50  E-value=0.087  Score=43.61  Aligned_cols=40  Identities=18%  Similarity=0.129  Sum_probs=34.6

Q ss_pred             CEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895          196 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       196 ~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~  236 (246)
                      +++||+|+ |++|...++.+...|+ +|+++++++++++.+.
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~-~V~~~~r~~~~~~~~~   62 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGW-SLVLTGRREERLQALA   62 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            68999988 8999999988888999 9999999988776543

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=93.49  E-value=0.15  Score=42.51  Aligned_cols=37  Identities=24%  Similarity=0.250  Sum_probs=31.9

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~  231 (246)
                      .++++||+|+ |++|...++.+...|+ +|+++++++++
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~   83 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEEG   83 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchH
Confidence            4689999988 8999999998889999 89998887653

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=93.48  E-value=0.12  Score=42.85  Aligned_cols=37  Identities=22%  Similarity=0.266  Sum_probs=31.5

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~  231 (246)
                      .++++||+|+ |++|...++.+...|+ +|+++++++++
T Consensus        28 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~   65 (283)
T 1g0o_A           28 EGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTE   65 (283)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchH
Confidence            3578999988 9999999998889999 89998887653

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=93.42  E-value=0.13  Score=42.46  Aligned_cols=40  Identities=30%  Similarity=0.244  Sum_probs=32.1

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcC-ChhHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFDR  234 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~-~~~~~~~  234 (246)
                      .++++||+|+ |++|...++.+...|+ +|+++++ ++++.+.
T Consensus        27 ~~k~vlVTGas~gIG~aia~~la~~G~-~V~~~~~~~~~~~~~   68 (269)
T 4dmm_A           27 TDRIALVTGASRGIGRAIALELAAAGA-KVAVNYASSAGAADE   68 (269)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCChHHHHH
Confidence            4678999988 8999999998888999 8888777 5555443

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=93.41  E-value=0.15  Score=43.50  Aligned_cols=43  Identities=16%  Similarity=0.169  Sum_probs=35.3

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHc-CCCeEEEEcCChhHHHHHh
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~-G~~~vi~~~~~~~~~~~~~  236 (246)
                      .+.+|||+|+ |.+|...++.+... |..+|+++++++.+.+.+.
T Consensus        20 ~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~   64 (344)
T 2gn4_A           20 DNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMA   64 (344)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHH
Confidence            4578999998 99999988888777 8668999999988765443

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=93.32  E-value=0.16  Score=43.17  Aligned_cols=47  Identities=23%  Similarity=0.352  Sum_probs=39.3

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      -.+.+|.|+|.|.+|...++.++..|+ +|++++++.++. .+.++|+.
T Consensus       140 l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~-~~~~~g~~  186 (313)
T 2ekl_A          140 LAGKTIGIVGFGRIGTKVGIIANAMGM-KVLAYDILDIRE-KAEKINAK  186 (313)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSCCHH-HHHHTTCE
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCCcchh-HHHhcCce
Confidence            357899999999999999999999999 999999988764 35556643

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=93.30  E-value=0.16  Score=45.99  Aligned_cols=47  Identities=30%  Similarity=0.303  Sum_probs=39.8

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCC
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVS  240 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~  240 (246)
                      -.+++|.|+|.|.+|..+++.++.+|+ +|++++++..+...+...|.
T Consensus       275 L~GktVgIIG~G~IG~~vA~~l~~~G~-~V~v~d~~~~~~~~a~~~G~  321 (494)
T 3d64_A          275 IAGKIAVVAGYGDVGKGCAQSLRGLGA-TVWVTEIDPICALQAAMEGY  321 (494)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSCHHHHHHHHTTTC
T ss_pred             cCCCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCChHhHHHHHHcCC
Confidence            468899999999999999999999999 99999999887544444444

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=93.25  E-value=0.12  Score=42.98  Aligned_cols=36  Identities=28%  Similarity=0.360  Sum_probs=31.7

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      .++++||+|+ +++|...++.+...|+ +|++++++++
T Consensus         8 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~   44 (285)
T 3sc4_A            8 RGKTMFISGGSRGIGLAIAKRVAADGA-NVALVAKSAE   44 (285)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHTTTC-EEEEEESCCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECChh
Confidence            3578999998 8999998888888999 8999998876

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=93.21  E-value=0.11  Score=42.17  Aligned_cols=36  Identities=31%  Similarity=0.316  Sum_probs=30.7

Q ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 025895          195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (246)
Q Consensus       195 ~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~  231 (246)
                      ++++||+|+ |++|...+..+...|+ +|++++++.++
T Consensus        14 ~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~   50 (265)
T 1h5q_A           14 NKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAAD   50 (265)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTT
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCcchh
Confidence            568999998 9999999888888999 89999886544

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=93.20  E-value=0.094  Score=43.05  Aligned_cols=38  Identities=24%  Similarity=0.154  Sum_probs=32.0

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKF  232 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~  232 (246)
                      .++++||+|+ |++|...++.+...|+ +|+++++++++.
T Consensus        26 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~   64 (260)
T 3gem_A           26 SSAPILITGASQRVGLHCALRLLEHGH-RVIISYRTEHAS   64 (260)
T ss_dssp             -CCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESSCCHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCChHHH
Confidence            3578999988 8999999988888999 899999887653

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=93.17  E-value=0.13  Score=42.25  Aligned_cols=35  Identities=31%  Similarity=0.468  Sum_probs=32.0

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      +.+|+|+|+|++|..+++.+...|..+++.+|...
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            36899999999999999999999998999999887

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=93.13  E-value=0.15  Score=43.88  Aligned_cols=46  Identities=26%  Similarity=0.362  Sum_probs=38.4

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCC
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVS  240 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~  240 (246)
                      -.+++|.|+|.|.+|...++.++..|+ +|++++++.++ +.+.++|+
T Consensus       163 l~g~tvgIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~-~~~~~~g~  208 (335)
T 2g76_A          163 LNGKTLGILGLGRIGREVATRMQSFGM-KTIGYDPIISP-EVSASFGV  208 (335)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSSCH-HHHHHTTC
T ss_pred             CCcCEEEEEeECHHHHHHHHHHHHCCC-EEEEECCCcch-hhhhhcCc
Confidence            357899999999999999999999999 99999988765 34555564

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=93.05  E-value=0.12  Score=42.05  Aligned_cols=38  Identities=24%  Similarity=0.276  Sum_probs=31.9

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 025895          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (246)
Q Consensus       193 ~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~  231 (246)
                      ..++++||+|+ |++|...++.+...|+ +|+++++++++
T Consensus        20 ~m~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~   58 (251)
T 3orf_A           20 HMSKNILVLGGSGALGAEVVKFFKSKSW-NTISIDFRENP   58 (251)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCT
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCccc
Confidence            34678999998 8999999999889999 89999988754

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=93.03  E-value=0.23  Score=40.93  Aligned_cols=39  Identities=23%  Similarity=0.242  Sum_probs=31.0

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcC-ChhHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFD  233 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~-~~~~~~  233 (246)
                      .++++||+|+ +++|...++.+...|+ +|+++++ ++++.+
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~   70 (271)
T 3v2g_A           30 AGKTAFVTGGSRGIGAAIAKRLALEGA-AVALTYVNAAERAQ   70 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHH
Confidence            4689999988 8999999988888999 8888744 444444

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=93.02  E-value=0.058  Score=45.15  Aligned_cols=41  Identities=10%  Similarity=0.173  Sum_probs=35.9

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR  234 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~  234 (246)
                      .+++++|+|+|++|.+++..+...|+++|+++.++.+|.+.
T Consensus       116 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~  156 (277)
T 3don_A          116 EDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNN  156 (277)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTT
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence            56789999999999999999999999889999999887543

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=93.00  E-value=0.1  Score=43.01  Aligned_cols=40  Identities=28%  Similarity=0.421  Sum_probs=32.8

Q ss_pred             CCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 025895          191 KVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (246)
Q Consensus       191 ~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~  231 (246)
                      ....++++||+|+ +++|...++.+...|+ +|+++++++++
T Consensus        10 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~   50 (269)
T 3vtz_A           10 EEFTDKVAIVTGGSSGIGLAVVDALVRYGA-KVVSVSLDEKS   50 (269)
T ss_dssp             CTTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCC--
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCchh
Confidence            3456789999988 8999999988888999 89999887654

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=92.99  E-value=0.18  Score=43.25  Aligned_cols=45  Identities=24%  Similarity=0.377  Sum_probs=38.3

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCC
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVS  240 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~  240 (246)
                      .+.+|.|+|.|.+|...++.++..|+ +|++++++.++ +.+.++|.
T Consensus       149 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~-~~~~~~g~  193 (334)
T 2dbq_A          149 YGKTIGIIGLGRIGQAIAKRAKGFNM-RILYYSRTRKE-EVERELNA  193 (334)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCH-HHHHHHCC
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCC-EEEEECCCcch-hhHhhcCc
Confidence            56799999999999999999999999 99999998877 55555554

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=92.95  E-value=0.087  Score=43.39  Aligned_cols=40  Identities=33%  Similarity=0.345  Sum_probs=33.0

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR  234 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~  234 (246)
                      .++++||+|+ |++|...+..+...|+ +|+++++++++.+.
T Consensus        33 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~   73 (279)
T 3ctm_A           33 KGKVASVTGSSGGIGWAVAEAYAQAGA-DVAIWYNSHPADEK   73 (279)
T ss_dssp             TTCEEEETTTTSSHHHHHHHHHHHHTC-EEEEEESSSCCHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            3578999988 8999998888888899 89999988765543

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=92.86  E-value=0.26  Score=41.82  Aligned_cols=45  Identities=22%  Similarity=0.460  Sum_probs=40.2

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCC-eEEEEcCChhHHHHHhhcCC
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAAGAS-RVIGIDIDPKKFDRGMSCVS  240 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~G~~-~vi~~~~~~~~~~~~~~lg~  240 (246)
                      .+|.|+|.|.+|...++.++..|.. +|+++++++++.+.++++|.
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~   79 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI   79 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCC
Confidence            5799999999999999988888873 79999999999999888876

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=92.83  E-value=0.14  Score=44.26  Aligned_cols=46  Identities=15%  Similarity=0.168  Sum_probs=39.6

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCC
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVS  240 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~  240 (246)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++..+.+.+.++|.
T Consensus       163 ~gktvGIIG~G~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~  208 (351)
T 3jtm_A          163 EGKTIGTVGAGRIGKLLLQRLKPFGC-NLLYHDRLQMAPELEKETGA  208 (351)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGCC-EEEEECSSCCCHHHHHHHCC
T ss_pred             cCCEEeEEEeCHHHHHHHHHHHHCCC-EEEEeCCCccCHHHHHhCCC
Confidence            57899999999999999999999999 89999988766666666664

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=92.81  E-value=0.18  Score=39.73  Aligned_cols=48  Identities=21%  Similarity=0.257  Sum_probs=39.6

Q ss_pred             hhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       187 ~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      .....++++++||-+|.|. |..++.+++. +. +|+++|.+++.++.+++
T Consensus        48 l~~l~~~~~~~vLDlGcG~-G~~~~~la~~-~~-~v~~vD~s~~~~~~a~~   95 (204)
T 3njr_A           48 LAALAPRRGELLWDIGGGS-GSVSVEWCLA-GG-RAITIEPRADRIENIQK   95 (204)
T ss_dssp             HHHHCCCTTCEEEEETCTT-CHHHHHHHHT-TC-EEEEEESCHHHHHHHHH
T ss_pred             HHhcCCCCCCEEEEecCCC-CHHHHHHHHc-CC-EEEEEeCCHHHHHHHHH
Confidence            4556778899999999875 7888888888 77 99999999998887664

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=92.78  E-value=0.16  Score=43.81  Aligned_cols=47  Identities=19%  Similarity=0.374  Sum_probs=39.5

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHH-HcCCCeEEEEcCChhHHHHHhhcCC
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDIDPKKFDRGMSCVS  240 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~-~~G~~~vi~~~~~~~~~~~~~~lg~  240 (246)
                      -.+.+|.|+|.|.+|...++.++ ..|+ +|++++++.++.+.+.++|.
T Consensus       161 l~g~~vgIIG~G~IG~~vA~~l~~~~G~-~V~~~d~~~~~~~~~~~~g~  208 (348)
T 2w2k_A          161 PRGHVLGAVGLGAIQKEIARKAVHGLGM-KLVYYDVAPADAETEKALGA  208 (348)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCC-EEEEECSSCCCHHHHHHHTC
T ss_pred             CCCCEEEEEEECHHHHHHHHHHHHhcCC-EEEEECCCCcchhhHhhcCc
Confidence            35789999999999999999999 9999 99999998876665555554

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=92.77  E-value=0.17  Score=42.30  Aligned_cols=40  Identities=18%  Similarity=0.160  Sum_probs=34.2

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .+++++|+|+|++|.+.+..+...|  +|++++++.++.+.+
T Consensus       127 ~~k~vlV~GaGgiG~aia~~L~~~G--~V~v~~r~~~~~~~l  166 (287)
T 1nvt_A          127 KDKNIVIYGAGGAARAVAFELAKDN--NIIIANRTVEKAEAL  166 (287)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTSSS--EEEEECSSHHHHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCC--CEEEEECCHHHHHHH
Confidence            4689999999999999988888888  899999998876544

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=92.76  E-value=0.21  Score=41.13  Aligned_cols=40  Identities=18%  Similarity=0.180  Sum_probs=30.8

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEE-cCChhHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI-DIDPKKFDR  234 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~-~~~~~~~~~  234 (246)
                      .++++||+|+ +++|...++.+...|+ +|+++ .+++++.+.
T Consensus        26 ~~k~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~   67 (267)
T 3u5t_A           26 TNKVAIVTGASRGIGAAIAARLASDGF-TVVINYAGKAAAAEE   67 (267)
T ss_dssp             -CCEEEEESCSSHHHHHHHHHHHHHTC-EEEEEESSCSHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHH
Confidence            4689999988 8999998888888899 77776 555555443

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=92.75  E-value=0.2  Score=41.17  Aligned_cols=42  Identities=26%  Similarity=0.140  Sum_probs=33.4

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEE-cCChhHHHHH
Q 025895          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI-DIDPKKFDRG  235 (246)
Q Consensus       193 ~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~-~~~~~~~~~~  235 (246)
                      ..++++||+|+ |++|...++.+...|+ +|+++ .+++++.+.+
T Consensus        24 ~~~k~vlITGas~gIG~a~a~~l~~~G~-~V~~~~~~~~~~~~~~   67 (272)
T 4e3z_A           24 SDTPVVLVTGGSRGIGAAVCRLAARQGW-RVGVNYAANREAADAV   67 (272)
T ss_dssp             CCSCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCChhHHHHH
Confidence            34678999988 9999999999999999 77665 7777765543

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=92.75  E-value=0.1  Score=44.82  Aligned_cols=46  Identities=20%  Similarity=0.255  Sum_probs=38.8

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCC
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVS  240 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~  240 (246)
                      .|.+|.|+|.|.+|...++.++..|+ +|++.+++..+.+.+.++|+
T Consensus       144 ~g~tvGIIG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~  189 (330)
T 4e5n_A          144 DNATVGFLGMGAIGLAMADRLQGWGA-TLQYHEAKALDTQTEQRLGL  189 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHTTTSCC-EEEEECSSCCCHHHHHHHTE
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCCCCcHhHHHhcCc
Confidence            47899999999999999999999999 99999998755555555554

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=92.71  E-value=0.19  Score=42.88  Aligned_cols=46  Identities=17%  Similarity=0.294  Sum_probs=38.0

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC-ChhHHHHHhhcCC
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI-DPKKFDRGMSCVS  240 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~-~~~~~~~~~~lg~  240 (246)
                      -.+.+|.|+|.|.+|...++.++..|+ +|+++++ +.++ +.++++|+
T Consensus       144 l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~-~~~~~~g~  190 (320)
T 1gdh_A          144 LDNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHRASS-SDEASYQA  190 (320)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCCCH-HHHHHHTC
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCcCh-hhhhhcCc
Confidence            357899999999999999999999999 9999998 7765 34455554

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=92.71  E-value=0.17  Score=42.00  Aligned_cols=42  Identities=21%  Similarity=0.144  Sum_probs=36.5

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~  236 (246)
                      .+.+++|+|+|.+|.+.+..+...|+ +|++++++.++.+.+.
T Consensus       128 ~~~~v~iiGaG~~g~aia~~L~~~g~-~V~v~~r~~~~~~~l~  169 (275)
T 2hk9_A          128 KEKSILVLGAGGASRAVIYALVKEGA-KVFLWNRTKEKAIKLA  169 (275)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSHHHHHHHT
T ss_pred             CCCEEEEECchHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHH
Confidence            45789999999999999999999999 9999999988866543

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=92.70  E-value=0.16  Score=43.72  Aligned_cols=37  Identities=24%  Similarity=0.304  Sum_probs=32.4

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~  231 (246)
                      .++++||+|+ +++|...+..+...|+ +|+++++++++
T Consensus        44 ~gk~vlVTGas~GIG~aia~~La~~Ga-~Vvl~~r~~~~   81 (346)
T 3kvo_A           44 AGCTVFITGASRGIGKAIALKAAKDGA-NIVIAAKTAQP   81 (346)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCCSC
T ss_pred             CCCEEEEeCCChHHHHHHHHHHHHCCC-EEEEEECChhh
Confidence            4689999998 8999999988888999 89999888764

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=92.66  E-value=0.23  Score=41.38  Aligned_cols=34  Identities=24%  Similarity=0.091  Sum_probs=30.2

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      .++++||+|+ +++|...+..+...|+ +|++++++
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~   82 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAINYLP   82 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCG
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            4689999988 8999999998889999 89998876

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=92.64  E-value=0.3  Score=38.04  Aligned_cols=51  Identities=10%  Similarity=0.194  Sum_probs=41.3

Q ss_pred             hhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       186 l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      +.....++++++||-+|.|. |..++.+++.....+|+++|.+++.++.+++
T Consensus        32 ~l~~l~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~   82 (204)
T 3e05_A           32 TLSKLRLQDDLVMWDIGAGS-ASVSIEASNLMPNGRIFALERNPQYLGFIRD   82 (204)
T ss_dssp             HHHHTTCCTTCEEEEETCTT-CHHHHHHHHHCTTSEEEEEECCHHHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEECCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH
Confidence            34566788999999999874 8888888888644599999999998887765

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=92.63  E-value=0.19  Score=41.86  Aligned_cols=43  Identities=19%  Similarity=0.110  Sum_probs=33.3

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCC--CeEEEEcCChhHHHHHh
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGA--SRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~--~~vi~~~~~~~~~~~~~  236 (246)
                      .++++||+|+ +++|...+..+...|+  .+|+.+++++++++.+.
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~   77 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELK   77 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHH
Confidence            3578999998 8999987766655554  28999999998876554

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=92.63  E-value=0.2  Score=42.31  Aligned_cols=34  Identities=24%  Similarity=0.337  Sum_probs=30.0

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      .++++||+|+ +++|...++.+...|+ +|++++++
T Consensus        45 ~gk~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~   79 (317)
T 3oec_A           45 QGKVAFITGAARGQGRTHAVRLAQDGA-DIVAIDLC   79 (317)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-eEEEEecc
Confidence            5689999988 8999999999889999 89998775

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=92.62  E-value=0.15  Score=39.75  Aligned_cols=84  Identities=18%  Similarity=0.262  Sum_probs=48.9

Q ss_pred             ceeeeEE-eecCceEEcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEc
Q 025895          148 TFSQYTV-VHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID  226 (246)
Q Consensus       148 ~~~~~~~-~~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~  226 (246)
                      .|.+|.. .+....+.+++.+++.....-...  .....+..  .++++++||-+|.|. |..+..+++ .+..+++++|
T Consensus        17 ~w~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~~~~l~~--~~~~~~~vLDiG~G~-G~~~~~l~~-~~~~~v~~vD   90 (205)
T 3grz_A           17 EWEDYQPVFKDQEIIRLDPGLAFGTGNHQTTQ--LAMLGIER--AMVKPLTVADVGTGS-GILAIAAHK-LGAKSVLATD   90 (205)
T ss_dssp             TTCCCCCSSTTCEEEEESCC-----CCHHHHH--HHHHHHHH--HCSSCCEEEEETCTT-SHHHHHHHH-TTCSEEEEEE
T ss_pred             cccccccCCCCceeEEecCCcccCCCCCccHH--HHHHHHHH--hccCCCEEEEECCCC-CHHHHHHHH-CCCCEEEEEE
Confidence            4556555 566677777777665543211000  00111111  156788999998865 666666666 4555999999


Q ss_pred             CChhHHHHHhh
Q 025895          227 IDPKKFDRGMS  237 (246)
Q Consensus       227 ~~~~~~~~~~~  237 (246)
                      .+++.++.+++
T Consensus        91 ~s~~~~~~a~~  101 (205)
T 3grz_A           91 ISDESMTAAEE  101 (205)
T ss_dssp             SCHHHHHHHHH
T ss_pred             CCHHHHHHHHH
Confidence            99998877765

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=92.61  E-value=0.17  Score=42.80  Aligned_cols=34  Identities=44%  Similarity=0.531  Sum_probs=30.1

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      .++++||+|+ +++|...+..+...|+ +|++++++
T Consensus        26 ~gk~vlVTGas~GIG~aia~~la~~G~-~Vv~~~r~   60 (322)
T 3qlj_A           26 DGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIG   60 (322)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCc
Confidence            4688999988 8999998888888999 99999876

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=92.61  E-value=0.15  Score=44.77  Aligned_cols=46  Identities=15%  Similarity=0.016  Sum_probs=39.3

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCC
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVS  240 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~  240 (246)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++..+.+.++++|+
T Consensus       190 ~gktvGIIGlG~IG~~vA~~l~a~G~-~V~~~d~~~~~~~~~~~~G~  235 (393)
T 2nac_A          190 EAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHRLPESVEKELNL  235 (393)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCCCHHHHHHHTC
T ss_pred             CCCEEEEEeECHHHHHHHHHHHhCCC-EEEEEcCCccchhhHhhcCc
Confidence            57899999999999999999999999 99999988766566666664

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=92.50  E-value=0.14  Score=44.60  Aligned_cols=46  Identities=20%  Similarity=0.252  Sum_probs=39.2

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCe-EEEEcCChhHHHHHhhcCC
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASR-VIGIDIDPKKFDRGMSCVS  240 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~-vi~~~~~~~~~~~~~~lg~  240 (246)
                      .+.+|.|+|.|.+|...++.++.+|+ + |++++++..+.+.+.++|+
T Consensus       163 ~g~tvgIIG~G~IG~~vA~~l~~~G~-~~V~~~d~~~~~~~~~~~~g~  209 (364)
T 2j6i_A          163 EGKTIATIGAGRIGYRVLERLVPFNP-KELLYYDYQALPKDAEEKVGA  209 (364)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGCC-SEEEEECSSCCCHHHHHHTTE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCC-cEEEEECCCccchhHHHhcCc
Confidence            67899999999999999999999999 6 9999988766666666654

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=92.43  E-value=0.17  Score=43.34  Aligned_cols=46  Identities=22%  Similarity=0.280  Sum_probs=38.4

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCC
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVS  240 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~  240 (246)
                      .+.+|.|+|.|.+|...++.++..|+ +|++++++.++.+.+.++|.
T Consensus       154 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~  199 (330)
T 2gcg_A          154 TQSTVGIIGLGRIGQAIARRLKPFGV-QRFLYTGRQPRPEEAAEFQA  199 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTC-CEEEEESSSCCHHHHHTTTC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCcchhHHHhcCc
Confidence            46799999999999999999999999 89999988766665555554

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=92.40  E-value=0.14  Score=42.98  Aligned_cols=41  Identities=22%  Similarity=0.161  Sum_probs=30.6

Q ss_pred             hCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          189 TAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       189 ~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      ..+.+++.+|||+|+ |.+|...++.+...|+ +|++++++++
T Consensus         8 ~~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~   49 (335)
T 1rpn_A            8 HHHGSMTRSALVTGITGQDGAYLAKLLLEKGY-RVHGLVARRS   49 (335)
T ss_dssp             -------CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCS
T ss_pred             ccccccCCeEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCCc
Confidence            345678899999998 9999999998888998 9999988764

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=92.39  E-value=0.12  Score=42.33  Aligned_cols=37  Identities=27%  Similarity=0.202  Sum_probs=31.4

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~  231 (246)
                      .++++||+|+ |++|...++.+...|+ +|+++++++++
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~   57 (253)
T 2nm0_A           20 MSRSVLVTGGNRGIGLAIARAFADAGD-KVAITYRSGEP   57 (253)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHh
Confidence            3578999998 9999999998888999 89998887554

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=92.30  E-value=0.22  Score=40.61  Aligned_cols=43  Identities=21%  Similarity=0.259  Sum_probs=34.2

Q ss_pred             CCCCCEEEEECC---CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          192 VEPGSIVAVFGL---GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       192 ~~~~~~VlI~Ga---g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      ...++++||+|+   +++|...++.+...|+ +|++++++++..+.+
T Consensus        11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   56 (271)
T 3ek2_A           11 FLDGKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRI   56 (271)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHH
T ss_pred             ccCCCEEEEeCCCCCCcHHHHHHHHHHHcCC-CEEEEecchhhHHHH
Confidence            456789999974   6899998888888999 899998886544433

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=92.26  E-value=0.13  Score=42.45  Aligned_cols=36  Identities=17%  Similarity=0.056  Sum_probs=31.7

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      .|+++||+|+ +++|.+.++.+...|+ +|+.++++++
T Consensus        10 ~GK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~   46 (261)
T 4h15_A           10 RGKRALITAGTKGAGAATVSLFLELGA-QVLTTARARP   46 (261)
T ss_dssp             TTCEEEESCCSSHHHHHHHHHHHHTTC-EEEEEESSCC
T ss_pred             CCCEEEEeccCcHHHHHHHHHHHHcCC-EEEEEECCch
Confidence            5789999988 8999999999999999 9999988653

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=92.25  E-value=0.19  Score=43.03  Aligned_cols=45  Identities=20%  Similarity=0.273  Sum_probs=37.7

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCC
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVS  240 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~  240 (246)
                      .+.+|.|+|.|.+|...++.++..|+ +|++++++.++ +.+.++|.
T Consensus       145 ~g~~vgIIG~G~iG~~vA~~l~~~G~-~V~~~d~~~~~-~~~~~~g~  189 (333)
T 2d0i_A          145 YGKKVGILGMGAIGKAIARRLIPFGV-KLYYWSRHRKV-NVEKELKA  189 (333)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCCH-HHHHHHTE
T ss_pred             CcCEEEEEccCHHHHHHHHHHHHCCC-EEEEECCCcch-hhhhhcCc
Confidence            56799999999999999999999999 99999998876 54444443

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=92.16  E-value=0.19  Score=41.42  Aligned_cols=38  Identities=18%  Similarity=0.293  Sum_probs=29.6

Q ss_pred             CCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          190 AKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       190 ~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      .+.++..+|||+|+ |.+|...+..+...|+ +|++++++
T Consensus         7 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   45 (292)
T 1vl0_A            7 HHHHHHMKILITGANGQLGREIQKQLKGKNV-EVIPTDVQ   45 (292)
T ss_dssp             -----CEEEEEESTTSHHHHHHHHHHTTSSE-EEEEECTT
T ss_pred             ccccccceEEEECCCChHHHHHHHHHHhCCC-eEEeccCc
Confidence            44567789999998 9999999998888898 89999765

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=92.15  E-value=0.089  Score=42.69  Aligned_cols=37  Identities=27%  Similarity=0.246  Sum_probs=31.6

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~  231 (246)
                      .++++||+|+ |++|...++.+...|+ +|+++++++++
T Consensus        14 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~   51 (247)
T 1uzm_A           14 VSRSVLVTGGNRGIGLAIAQRLAADGH-KVAVTHRGSGA   51 (247)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHH
Confidence            4578999988 9999999998888999 89999887654

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=92.15  E-value=0.25  Score=42.69  Aligned_cols=45  Identities=24%  Similarity=0.328  Sum_probs=37.7

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCC
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVS  240 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~  240 (246)
                      .|++|.|+|.|.+|...++.++..|+ +|++.+++. +.+.+.+.|.
T Consensus       159 ~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~~~~~g~  203 (352)
T 3gg9_A          159 KGQTLGIFGYGKIGQLVAGYGRAFGM-NVLVWGREN-SKERARADGF  203 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSHH-HHHHHHHTTC
T ss_pred             CCCEEEEEeECHHHHHHHHHHHhCCC-EEEEECCCC-CHHHHHhcCc
Confidence            47899999999999999999999999 999998875 3355555565

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=92.15  E-value=0.06  Score=44.41  Aligned_cols=38  Identities=37%  Similarity=0.441  Sum_probs=32.3

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKF  232 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~  232 (246)
                      .++++||+|+ |++|...++.+...|+ +|++++++.++.
T Consensus        27 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~   65 (266)
T 3uxy_A           27 EGKVALVTGAAGGIGGAVVTALRAAGA-RVAVADRAVAGI   65 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECSSCCTTS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHH
Confidence            4688999988 8999999988888999 899998876543

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=92.13  E-value=0.3  Score=44.01  Aligned_cols=40  Identities=25%  Similarity=0.263  Sum_probs=33.6

Q ss_pred             CCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          191 KVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       191 ~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      .++++.++||+|+ |++|...+..+...|+.+|+.++++..
T Consensus       222 ~~~~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~  262 (486)
T 2fr1_A          222 EWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGP  262 (486)
T ss_dssp             CCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGG
T ss_pred             CcCCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCC
Confidence            3578899999988 999999888887889966999988864

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=92.10  E-value=0.29  Score=40.41  Aligned_cols=43  Identities=14%  Similarity=0.305  Sum_probs=34.0

Q ss_pred             CCCEEEEECC-CH--HHHHHHHHHHHcCCCeEEEEcCCh--hHHHHHhh
Q 025895          194 PGSIVAVFGL-GT--VGLAVAEGAKAAGASRVIGIDIDP--KKFDRGMS  237 (246)
Q Consensus       194 ~~~~VlI~Ga-g~--~G~~ai~~a~~~G~~~vi~~~~~~--~~~~~~~~  237 (246)
                      .++++||+|+ |.  +|...++.+...|+ +|+++++++  ++.+.+.+
T Consensus        25 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~l~~   72 (280)
T 3nrc_A           25 AGKKILITGLLSNKSIAYGIAKAMHREGA-ELAFTYVGQFKDRVEKLCA   72 (280)
T ss_dssp             TTCEEEECCCCSTTCHHHHHHHHHHHTTC-EEEEEECTTCHHHHHHHHG
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHcCC-EEEEeeCchHHHHHHHHHH
Confidence            4688999986 44  99998888888999 899998887  55555543

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=92.04  E-value=0.18  Score=44.06  Aligned_cols=35  Identities=23%  Similarity=0.352  Sum_probs=32.6

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      .+.+|+|+|+|..|..+++++..+|+++|+++|++
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            55799999999999999999999999899999998

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=91.96  E-value=0.19  Score=41.93  Aligned_cols=39  Identities=18%  Similarity=0.229  Sum_probs=30.0

Q ss_pred             CCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          191 KVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       191 ~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      ..++..+|||+|+ |.+|...++.+...|+ +|++++++++
T Consensus         8 ~~~~~~~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~r~~~   47 (321)
T 2pk3_A            8 HHHGSMRALITGVAGFVGKYLANHLTEQNV-EVFGTSRNNE   47 (321)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCTT
T ss_pred             cccCcceEEEECCCChHHHHHHHHHHHCCC-EEEEEecCCc
Confidence            3466789999998 9999999998888998 8999987653

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=91.88  E-value=0.35  Score=40.47  Aligned_cols=39  Identities=28%  Similarity=0.399  Sum_probs=33.0

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .+|.|+|+|.+|...++.+...|+ +|+++++++++++.+
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~   54 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKS   54 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHH
Confidence            579999999999976666667798 999999999887754

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=91.87  E-value=0.38  Score=43.70  Aligned_cols=38  Identities=26%  Similarity=0.358  Sum_probs=32.9

Q ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       192 ~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      +++++++||+|+ |++|...+..+...|+.+|+.++++.
T Consensus       256 ~~~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~  294 (511)
T 2z5l_A          256 WQPSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRG  294 (511)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSG
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCC
Confidence            578899999988 99999988888888996788888876

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=91.84  E-value=0.16  Score=46.21  Aligned_cols=42  Identities=31%  Similarity=0.333  Sum_probs=33.5

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~  236 (246)
                      .+++++|+|+|++|.+++..+...|+ +|++++++.++.+.+.
T Consensus       363 ~~k~vlV~GaGGig~aia~~L~~~G~-~V~i~~R~~~~a~~la  404 (523)
T 2o7s_A          363 ASKTVVVIGAGGAGKALAYGAKEKGA-KVVIANRTYERALELA  404 (523)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHHHCC--CEEEESSHHHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            35689999999999999999999999 8999999988876553

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=91.78  E-value=0.31  Score=41.03  Aligned_cols=45  Identities=24%  Similarity=0.224  Sum_probs=40.1

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      .+|.|+|.|.+|...++.+...|+ +|++.++++++.+.+.+.|..
T Consensus        22 ~~I~iIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~   66 (310)
T 3doj_A           22 MEVGFLGLGIMGKAMSMNLLKNGF-KVTVWNRTLSKCDELVEHGAS   66 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSGGGGHHHHHTTCE
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHCCCe
Confidence            579999999999999888888999 999999999999888877754

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=91.74  E-value=0.26  Score=40.04  Aligned_cols=38  Identities=29%  Similarity=0.403  Sum_probs=30.7

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKF  232 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~  232 (246)
                      .++++||+|+ +++|...++.+...|+ +|++++++.++.
T Consensus         8 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~   46 (257)
T 3tl3_A            8 RDAVAVVTGGASGLGLATTKRLLDAGA-QVVVLDIRGEDV   46 (257)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSCHHH
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCchHHH
Confidence            3578999998 8999998888888899 899988866543

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=91.72  E-value=0.31  Score=39.97  Aligned_cols=40  Identities=30%  Similarity=0.288  Sum_probs=34.7

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .+ +++|+|+|.+|...+..+...|+ +|++++++.++.+.+
T Consensus       116 ~~-~v~iiG~G~~g~~~a~~l~~~g~-~v~v~~r~~~~~~~l  155 (263)
T 2d5c_A          116 KG-PALVLGAGGAGRAVAFALREAGL-EVWVWNRTPQRALAL  155 (263)
T ss_dssp             CS-CEEEECCSHHHHHHHHHHHHTTC-CEEEECSSHHHHHHH
T ss_pred             CC-eEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            45 89999999999999999999999 899999998875543

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=91.71  E-value=0.38  Score=37.65  Aligned_cols=51  Identities=24%  Similarity=0.360  Sum_probs=40.9

Q ss_pred             hhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHhh
Q 025895          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       186 l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~-~~vi~~~~~~~~~~~~~~  237 (246)
                      +.......++++||-+|+| .|..+..+++..|. .+|++++.+++.++.+++
T Consensus        69 ~~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~  120 (215)
T 2yxe_A           69 MCELLDLKPGMKVLEIGTG-CGYHAAVTAEIVGEDGLVVSIERIPELAEKAER  120 (215)
T ss_dssp             HHHHTTCCTTCEEEEECCT-TSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHH
T ss_pred             HHHhhCCCCCCEEEEECCC-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Confidence            3455677889999999987 58888888888862 389999999988877765

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=91.66  E-value=0.16  Score=41.57  Aligned_cols=37  Identities=16%  Similarity=0.263  Sum_probs=31.5

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~  231 (246)
                      .++++||+|+ |++|...+..+...|+ +|++++++.++
T Consensus        27 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~   64 (260)
T 3un1_A           27 QQKVVVITGASQGIGAGLVRAYRDRNY-RVVATSRSIKP   64 (260)
T ss_dssp             TCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChhh
Confidence            4578999988 8999999998888999 89999887543

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=91.62  E-value=0.38  Score=40.71  Aligned_cols=46  Identities=17%  Similarity=0.226  Sum_probs=40.1

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      ..+|.|+|.|.+|...++.+...|+ +|++.++++++.+.+.+.|..
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~   76 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCEAGY-ALQVWNRTPARAASLAALGAT   76 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTTCE
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCC-eEEEEcCCHHHHHHHHHCCCE
Confidence            3589999999999998888888999 999999999999888776653

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=91.62  E-value=0.27  Score=40.26  Aligned_cols=39  Identities=21%  Similarity=0.211  Sum_probs=31.2

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEc-CChhHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID-IDPKKFD  233 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~-~~~~~~~  233 (246)
                      .++++||+|+ +++|...++.+...|+ +|++++ ++.++.+
T Consensus        24 ~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~   64 (269)
T 3gk3_A           24 AKRVAFVTGGMGGLGAAISRRLHDAGM-AVAVSHSERNDHVS   64 (269)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEECSCHHHHH
T ss_pred             cCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCchHHHH
Confidence            4578899988 8999999888888999 888887 5554443

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=91.62  E-value=0.38  Score=40.31  Aligned_cols=51  Identities=18%  Similarity=0.327  Sum_probs=42.1

Q ss_pred             hhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhc
Q 025895          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSC  238 (246)
Q Consensus       186 l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~l  238 (246)
                      +.....++++++||-+|.|. |..+..+++..|+ +|++++.+++.++.+++.
T Consensus        82 ~~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~  132 (318)
T 2fk8_A           82 NLDKLDLKPGMTLLDIGCGW-GTTMRRAVERFDV-NVIGLTLSKNQHARCEQV  132 (318)
T ss_dssp             HHTTSCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHH
T ss_pred             HHHhcCCCCcCEEEEEcccc-hHHHHHHHHHCCC-EEEEEECCHHHHHHHHHH
Confidence            44566788999999999875 7788888888788 999999999988877653

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=91.51  E-value=0.29  Score=42.44  Aligned_cols=38  Identities=26%  Similarity=0.490  Sum_probs=33.7

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       191 ~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      ...++++|+|+|+|.+|...++.++.+|+ ++++++..+
T Consensus         8 ~~~~~~~IlIlG~G~lg~~la~aa~~lG~-~viv~d~~~   45 (377)
T 3orq_A            8 KLKFGATIGIIGGGQLGKMMAQSAQKMGY-KVVVLDPSE   45 (377)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCT
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCC
Confidence            34578999999999999999999999999 899988754

>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}

Probab=91.41  E-value=0.3  Score=44.51  Aligned_cols=38  Identities=16%  Similarity=0.078  Sum_probs=31.5

Q ss_pred             CCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEE-cCC
Q 025895          191 KVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI-DID  228 (246)
Q Consensus       191 ~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~-~~~  228 (246)
                      .+++++++||+|+ |++|...++.+...|+..++.+ +++
T Consensus       247 ~~~~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~  286 (525)
T 3qp9_A          247 WWQADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPS  286 (525)
T ss_dssp             SSCTTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred             eecCCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCC
Confidence            3578899999987 9999998888888899557777 777

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=91.38  E-value=0.3  Score=38.79  Aligned_cols=44  Identities=20%  Similarity=0.302  Sum_probs=36.3

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcC
Q 025895          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCV  239 (246)
Q Consensus       195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg  239 (246)
                      ..+|.|+|+|.+|...+..+...|. +|+++++++++.+.+.+.|
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~g   71 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGF-KVVVGSRNPKRTARLFPSA   71 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTC-CEEEEESSHHHHHHHSBTT
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcC
Confidence            3579999999999998888888898 8999999998877665444

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=91.34  E-value=0.44  Score=37.14  Aligned_cols=49  Identities=18%  Similarity=0.066  Sum_probs=39.8

Q ss_pred             hhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       186 l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      +......+++++||-+|+| .|..+..+++. +. +|++++.+++.++.+++
T Consensus        69 ~~~~l~~~~~~~vLdiG~G-~G~~~~~la~~-~~-~v~~vD~~~~~~~~a~~  117 (210)
T 3lbf_A           69 MTELLELTPQSRVLEIGTG-SGYQTAILAHL-VQ-HVCSVERIKGLQWQARR  117 (210)
T ss_dssp             HHHHTTCCTTCEEEEECCT-TSHHHHHHHHH-SS-EEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEEcCC-CCHHHHHHHHh-CC-EEEEEecCHHHHHHHHH
Confidence            3455677899999999987 47778888887 66 99999999998887765

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=91.27  E-value=0.16  Score=42.94  Aligned_cols=37  Identities=32%  Similarity=0.549  Sum_probs=29.6

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       193 ~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      ..+.+|||+|+ |.+|...++.+...|+ +|++++++++
T Consensus        17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~   54 (347)
T 4id9_A           17 RGSHMILVTGSAGRVGRAVVAALRTQGR-TVRGFDLRPS   54 (347)
T ss_dssp             ----CEEEETTTSHHHHHHHHHHHHTTC-CEEEEESSCC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCC-EEEEEeCCCC
Confidence            45678999998 9999999999999998 8999988753

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=91.26  E-value=0.17  Score=41.08  Aligned_cols=38  Identities=24%  Similarity=0.279  Sum_probs=28.8

Q ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEc-CChh
Q 025895          192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID-IDPK  230 (246)
Q Consensus       192 ~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~-~~~~  230 (246)
                      ..+++++||+|+ |++|...+..+...|+ +|++++ ++.+
T Consensus        10 ~~~~k~vlITGas~giG~~ia~~l~~~G~-~v~~~~~~~~~   49 (256)
T 3ezl_A           10 VMSQRIAYVTGGMGGIGTSICQRLHKDGF-RVVAGCGPNSP   49 (256)
T ss_dssp             ---CEEEEETTTTSHHHHHHHHHHHHTTE-EEEEEECTTCS
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHH
Confidence            356688999988 8999998888888999 788776 4443

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=91.25  E-value=0.32  Score=42.23  Aligned_cols=38  Identities=26%  Similarity=0.448  Sum_probs=33.7

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       191 ~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      .+.++++|+|+|+|.+|...++.++.+|+ +|++++.++
T Consensus        10 ~~~~~k~IlIlG~G~~g~~la~aa~~~G~-~vi~~d~~~   47 (389)
T 3q2o_A           10 IILPGKTIGIIGGGQLGRMMALAAKEMGY-KIAVLDPTK   47 (389)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESST
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCC
Confidence            35678999999999999999999999999 899988654

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=91.24  E-value=0.45  Score=40.01  Aligned_cols=44  Identities=20%  Similarity=0.231  Sum_probs=36.8

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhc
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSC  238 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~l  238 (246)
                      ...++|.|+|+|.+|...++.+. .|+ +|++.++++++++.+.+.
T Consensus        10 ~~~~~V~vIG~G~MG~~iA~~la-aG~-~V~v~d~~~~~~~~~~~~   53 (293)
T 1zej_A           10 HHHMKVFVIGAGLMGRGIAIAIA-SKH-EVVLQDVSEKALEAAREQ   53 (293)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHH-TTS-EEEEECSCHHHHHHHHHH
T ss_pred             cCCCeEEEEeeCHHHHHHHHHHH-cCC-EEEEEECCHHHHHHHHHH
Confidence            45688999999999988777777 899 999999999998877664

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=91.20  E-value=0.25  Score=37.25  Aligned_cols=50  Identities=16%  Similarity=0.220  Sum_probs=40.3

Q ss_pred             hhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       187 ~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      .....++++++||-+|.|. |..+..+++..+..+|+++|.+++.++.+++
T Consensus        18 ~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~   67 (178)
T 3hm2_A           18 ISALAPKPHETLWDIGGGS-GSIAIEWLRSTPQTTAVCFEISEERRERILS   67 (178)
T ss_dssp             HHHHCCCTTEEEEEESTTT-THHHHHHHTTSSSEEEEEECSCHHHHHHHHH
T ss_pred             HHHhcccCCCeEEEeCCCC-CHHHHHHHHHCCCCeEEEEeCCHHHHHHHHH
Confidence            3455678889999999875 8888888888744499999999998887764

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=91.17  E-value=0.3  Score=39.10  Aligned_cols=49  Identities=20%  Similarity=0.245  Sum_probs=40.8

Q ss_pred             hhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       187 ~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      .....++++++||-+|.| .|..+..+++..+. +|++++.+++..+.+++
T Consensus        84 ~~~l~~~~~~~vLdiG~G-~G~~~~~la~~~~~-~v~~vD~~~~~~~~a~~  132 (235)
T 1jg1_A           84 LEIANLKPGMNILEVGTG-SGWNAALISEIVKT-DVYTIERIPELVEFAKR  132 (235)
T ss_dssp             HHHHTCCTTCCEEEECCT-TSHHHHHHHHHHCS-CEEEEESCHHHHHHHHH
T ss_pred             HHhcCCCCCCEEEEEeCC-cCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHH
Confidence            445577889999999988 78888899998874 99999999988877765

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=91.05  E-value=0.52  Score=39.02  Aligned_cols=44  Identities=23%  Similarity=0.362  Sum_probs=38.3

Q ss_pred             CEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCC
Q 025895          196 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVS  240 (246)
Q Consensus       196 ~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~  240 (246)
                      .+|.|+|+ |.+|...+..+...|. +|+++++++++.+.+.+.|.
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~g~   56 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAH-HLAAIEIAPEGRDRLQGMGI   56 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSS-EEEEECCSHHHHHHHHHTTC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHhcCC
Confidence            47999999 9999998888888998 89999999999888776664

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=90.96  E-value=0.39  Score=42.39  Aligned_cols=39  Identities=31%  Similarity=0.498  Sum_probs=34.3

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       191 ~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      .+.++++|+|+|+|.+|...++.++.+|+ +|++++..+.
T Consensus        31 ~~~~~~~IlIlG~G~lg~~~~~aa~~lG~-~v~v~d~~~~   69 (419)
T 4e4t_A           31 PILPGAWLGMVGGGQLGRMFCFAAQSMGY-RVAVLDPDPA   69 (419)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCTT
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCCc
Confidence            35688999999999999999999999999 8999986644

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=90.86  E-value=0.36  Score=39.41  Aligned_cols=38  Identities=24%  Similarity=0.174  Sum_probs=30.1

Q ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCeEEE-EcCChhHHH
Q 025895          195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIG-IDIDPKKFD  233 (246)
Q Consensus       195 ~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~-~~~~~~~~~  233 (246)
                      ++++||+|+ |++|...++.+...|+ +|++ ..+++++.+
T Consensus        26 ~k~vlVTGas~gIG~~la~~l~~~G~-~v~i~~~r~~~~~~   65 (267)
T 4iiu_A           26 SRSVLVTGASKGIGRAIARQLAADGF-NIGVHYHRDAAGAQ   65 (267)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCchHHHH
Confidence            578999988 9999999999889999 6755 556665544

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=90.84  E-value=0.37  Score=39.80  Aligned_cols=36  Identities=19%  Similarity=0.319  Sum_probs=30.7

Q ss_pred             CCCEEEEECC---CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          194 PGSIVAVFGL---GTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       194 ~~~~VlI~Ga---g~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      .++++||+|+   |++|...++.+...|+ +|++++++++
T Consensus        20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~   58 (285)
T 2p91_A           20 EGKRALITGVANERSIAYGIAKSFHREGA-QLAFTYATPK   58 (285)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEESSGG
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCCHH
Confidence            4678999986   5999999888888999 8999988875

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=90.83  E-value=0.51  Score=39.19  Aligned_cols=50  Identities=18%  Similarity=0.387  Sum_probs=41.9

Q ss_pred             hhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       186 l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      +.....++++++||-+|.|. |..+..+++..|+ +|++++.+++.++.+++
T Consensus        64 ~~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~  113 (302)
T 3hem_A           64 ALDKLNLEPGMTLLDIGCGW-GSTMRHAVAEYDV-NVIGLTLSENQYAHDKA  113 (302)
T ss_dssp             HHHTTCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEECCHHHHHHHHH
T ss_pred             HHHHcCCCCcCEEEEeeccC-cHHHHHHHHhCCC-EEEEEECCHHHHHHHHH
Confidence            45667788999999999874 7888889998887 99999999998877765

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=90.80  E-value=0.39  Score=42.10  Aligned_cols=35  Identities=31%  Similarity=0.379  Sum_probs=32.0

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      +..+|+|.|+|..|..+++++..+|+++|+++|++
T Consensus       187 ~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~  221 (398)
T 2a9f_A          187 DEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKF  221 (398)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence            44689999999999999999999999999999886

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=90.75  E-value=0.56  Score=39.58  Aligned_cols=34  Identities=24%  Similarity=0.258  Sum_probs=30.2

Q ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       195 ~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      +.+|||+|+ |.+|...+..+...|. +|++++++.
T Consensus        25 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~   59 (351)
T 3ruf_A           25 PKTWLITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFS   59 (351)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCS
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence            478999998 9999999999999998 999998854

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=90.72  E-value=0.58  Score=42.33  Aligned_cols=38  Identities=26%  Similarity=0.259  Sum_probs=31.3

Q ss_pred             CCCC--CEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          192 VEPG--SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       192 ~~~~--~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      +++.  +++||+|+ |++|...++.+...|+.+|+.+.++.
T Consensus       234 ~~~~~~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~  274 (496)
T 3mje_A          234 KRPPVHGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRG  274 (496)
T ss_dssp             CCCCCCSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSG
T ss_pred             CCCCCCCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCC
Confidence            3455  89999987 99999988888888987888888863

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=90.66  E-value=0.39  Score=40.68  Aligned_cols=33  Identities=36%  Similarity=0.426  Sum_probs=28.3

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcC
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI  227 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~  227 (246)
                      .++++||+|+ |++|...++.+...|+ +|+++++
T Consensus         8 ~gk~~lVTGas~GIG~~~a~~La~~Ga-~Vv~~~~   41 (319)
T 1gz6_A            8 DGRVVLVTGAGGGLGRAYALAFAERGA-LVVVNDL   41 (319)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcC
Confidence            3578999998 8999999998888999 8988754

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=90.63  E-value=0.37  Score=40.88  Aligned_cols=33  Identities=21%  Similarity=0.139  Sum_probs=29.6

Q ss_pred             CEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          196 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       196 ~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      .+|||+|+ |.+|...+..+...|. +|+++++++
T Consensus        11 ~~IlVtGatG~iG~~l~~~L~~~g~-~V~~l~R~~   44 (346)
T 3i6i_A           11 GRVLIAGATGFIGQFVATASLDAHR-PTYILARPG   44 (346)
T ss_dssp             CCEEEECTTSHHHHHHHHHHHHTTC-CEEEEECSS
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCCC-CEEEEECCC
Confidence            57999998 9999999999988998 899998876

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=90.55  E-value=0.57  Score=37.67  Aligned_cols=53  Identities=25%  Similarity=0.240  Sum_probs=43.3

Q ss_pred             hhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCC
Q 025895          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVS  240 (246)
Q Consensus       186 l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~  240 (246)
                      +.....++++.+||-+|.| .|..+..+++..+. +|+++|.+++.++.+++...
T Consensus        47 ~~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~   99 (266)
T 3ujc_A           47 ILSDIELNENSKVLDIGSG-LGGGCMYINEKYGA-HTHGIDICSNIVNMANERVS   99 (266)
T ss_dssp             HTTTCCCCTTCEEEEETCT-TSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHTCC
T ss_pred             HHHhcCCCCCCEEEEECCC-CCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhh
Confidence            4455678889999999886 67778888887787 99999999999998887543

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=90.38  E-value=0.44  Score=39.03  Aligned_cols=39  Identities=28%  Similarity=0.293  Sum_probs=30.8

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcC-ChhHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFD  233 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~-~~~~~~  233 (246)
                      .++++||+|+ +++|...++.+...|+ +|+++++ ++++.+
T Consensus        17 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~~~~~~~~~   57 (270)
T 3is3_A           17 DGKVALVTGSGRGIGAAVAVHLGRLGA-KVVVNYANSTKDAE   57 (270)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHH
Confidence            4688999988 8999999998889999 8887655 444443

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=90.31  E-value=0.39  Score=39.16  Aligned_cols=35  Identities=17%  Similarity=0.247  Sum_probs=30.0

Q ss_pred             CCCEEEEECC---CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          194 PGSIVAVFGL---GTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       194 ~~~~VlI~Ga---g~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      .++++||+|+   |++|...++.+...|+ +|+++++++
T Consensus         8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~   45 (265)
T 1qsg_A            8 SGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQND   45 (265)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESST
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEcCcH
Confidence            4578999986   5999999988888999 899998886

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=90.24  E-value=0.28  Score=41.26  Aligned_cols=36  Identities=28%  Similarity=0.393  Sum_probs=31.2

Q ss_pred             EEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 025895          197 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (246)
Q Consensus       197 ~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~  233 (246)
                      +|||+|+ |.+|...++.+...|+ +|+++++++.+.+
T Consensus        15 ~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~   51 (342)
T 2x4g_A           15 KYAVLGATGLLGHHAARAIRAAGH-DLVLIHRPSSQIQ   51 (342)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTC-EEEEEECTTSCGG
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCC-EEEEEecChHhhh
Confidence            7999998 9999999998888998 9999998876543

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=90.24  E-value=0.26  Score=39.40  Aligned_cols=37  Identities=16%  Similarity=0.207  Sum_probs=32.2

Q ss_pred             CEEEEECC-CHHHHHHHHHHHHcC-CCeEEEEcCChhHHH
Q 025895          196 SIVAVFGL-GTVGLAVAEGAKAAG-ASRVIGIDIDPKKFD  233 (246)
Q Consensus       196 ~~VlI~Ga-g~~G~~ai~~a~~~G-~~~vi~~~~~~~~~~  233 (246)
                      .+|||+|+ |.+|...++.+...| + +|+++++++++.+
T Consensus        24 k~vlVtGatG~iG~~l~~~L~~~G~~-~V~~~~R~~~~~~   62 (236)
T 3qvo_A           24 KNVLILGAGGQIARHVINQLADKQTI-KQTLFARQPAKIH   62 (236)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTTE-EEEEEESSGGGSC
T ss_pred             cEEEEEeCCcHHHHHHHHHHHhCCCc-eEEEEEcChhhhc
Confidence            57999998 999999999999999 7 9999999887643

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=90.21  E-value=0.72  Score=39.85  Aligned_cols=45  Identities=13%  Similarity=0.222  Sum_probs=40.1

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      .+|.|+|.|.+|...+..+...|+ +|+++++++++.+.+.+.|+.
T Consensus        23 mkIgiIGlG~mG~~~A~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~   67 (358)
T 4e21_A           23 MQIGMIGLGRMGADMVRRLRKGGH-ECVVYDLNVNAVQALEREGIA   67 (358)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTTCB
T ss_pred             CEEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHCCCE
Confidence            579999999999999888889998 999999999999988877654

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=90.13  E-value=0.35  Score=41.06  Aligned_cols=36  Identities=28%  Similarity=0.261  Sum_probs=31.1

Q ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 025895          195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (246)
Q Consensus       195 ~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~  231 (246)
                      +.+|||+|+ |.+|...++.+...|+ +|+++++++++
T Consensus         9 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~   45 (357)
T 1rkx_A            9 GKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLTAPT   45 (357)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCSS
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCC-eEEEEeCCCcc
Confidence            468999998 9999999998888998 89999887643

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=90.09  E-value=0.29  Score=41.87  Aligned_cols=38  Identities=18%  Similarity=0.442  Sum_probs=31.9

Q ss_pred             CCEEEEECC-CHHHHHHHHHHHHc-CCCeEEEEcCChhHHH
Q 025895          195 GSIVAVFGL-GTVGLAVAEGAKAA-GASRVIGIDIDPKKFD  233 (246)
Q Consensus       195 ~~~VlI~Ga-g~~G~~ai~~a~~~-G~~~vi~~~~~~~~~~  233 (246)
                      ..+|||+|+ |.+|...++.+... |+ +|+++++++++.+
T Consensus        24 ~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~   63 (372)
T 3slg_A           24 AKKVLILGVNGFIGHHLSKRILETTDW-EVFGMDMQTDRLG   63 (372)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHHSSC-EEEEEESCCTTTG
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCC-EEEEEeCChhhhh
Confidence            468999998 99999988888877 88 9999999876544

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=89.92  E-value=0.44  Score=41.41  Aligned_cols=45  Identities=20%  Similarity=0.108  Sum_probs=36.9

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCC
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVS  240 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~  240 (246)
                      .|++|.|+|.|.+|...++.++..|+ +|++.+++. +.+.+.+.|+
T Consensus       175 ~gktvGIIGlG~IG~~vA~~l~~fG~-~V~~~d~~~-~~~~~~~~g~  219 (365)
T 4hy3_A          175 AGSEIGIVGFGDLGKALRRVLSGFRA-RIRVFDPWL-PRSMLEENGV  219 (365)
T ss_dssp             SSSEEEEECCSHHHHHHHHHHTTSCC-EEEEECSSS-CHHHHHHTTC
T ss_pred             CCCEEEEecCCcccHHHHHhhhhCCC-EEEEECCCC-CHHHHhhcCe
Confidence            47899999999999999999999999 999999875 3344445554

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=89.85  E-value=0.48  Score=42.36  Aligned_cols=40  Identities=15%  Similarity=0.042  Sum_probs=32.4

Q ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHc---CCCeEEEEcCChhHH
Q 025895          192 VEPGSIVAVFGL-GTVGLAVAEGAKAA---GASRVIGIDIDPKKF  232 (246)
Q Consensus       192 ~~~~~~VlI~Ga-g~~G~~ai~~a~~~---G~~~vi~~~~~~~~~  232 (246)
                      ...+.+|||+|+ |.+|...+..+...   |. +|+++++++++.
T Consensus        70 ~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~-~V~~l~R~~~~~  113 (478)
T 4dqv_A           70 SPELRTVLLTGATGFLGRYLVLELLRRLDVDG-RLICLVRAESDE  113 (478)
T ss_dssp             CSCCCEEEEECTTSHHHHHHHHHHHHHSCTTC-EEEEEECSSSHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhcCCCCC-EEEEEECCCCcH
Confidence            345789999998 99999887777766   77 999999987644

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=89.70  E-value=0.44  Score=40.06  Aligned_cols=35  Identities=23%  Similarity=0.142  Sum_probs=30.2

Q ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       195 ~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      +.+|||+|+ |.+|...+..+...|+ +|+++.++.+
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~-~V~~~~r~~~   44 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGY-AVNTTVRDPD   44 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTC-EEEEEESCTT
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCC-EEEEEEcCcc
Confidence            678999997 9999999998888999 8888777654

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=89.67  E-value=0.84  Score=36.57  Aligned_cols=50  Identities=20%  Similarity=0.318  Sum_probs=40.3

Q ss_pred             hhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       186 l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      +.....++++.+||=+|.|. |..+..+++..+. +++++|.+++.++.+++
T Consensus        28 l~~~~~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~l~~a~~   77 (256)
T 1nkv_A           28 LGRVLRMKPGTRILDLGSGS-GEMLCTWARDHGI-TGTGIDMSSLFTAQAKR   77 (256)
T ss_dssp             HHHHTCCCTTCEEEEETCTT-CHHHHHHHHHTCC-EEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEECCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHH
Confidence            34556788999999998865 6778888888888 99999999988777654

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=89.67  E-value=0.7  Score=37.12  Aligned_cols=52  Identities=21%  Similarity=0.227  Sum_probs=41.8

Q ss_pred             hhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCChhHHHHHhhc
Q 025895          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRGMSC  238 (246)
Q Consensus       186 l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G-~~~vi~~~~~~~~~~~~~~l  238 (246)
                      +.....++++++||-+|+|. |..+..+++..+ ..+|++++.+++.++.+++.
T Consensus        88 ~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~  140 (258)
T 2pwy_A           88 MVTLLDLAPGMRVLEAGTGS-GGLTLFLARAVGEKGLVESYEARPHHLAQAERN  140 (258)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEECCCc-CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Confidence            44556788999999999874 888888998853 34999999999988877654

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=89.62  E-value=0.42  Score=41.20  Aligned_cols=45  Identities=33%  Similarity=0.255  Sum_probs=36.2

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCC
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVS  240 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~  240 (246)
                      .+.+|.|+|.|.+|...++.++..|+ +|++.+++.++. ..+++|+
T Consensus       167 ~g~tvGIIG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~-~~~~~g~  211 (347)
T 1mx3_A          167 RGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDPYLSDG-VERALGL  211 (347)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSCTT-HHHHHTC
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCC-EEEEECCCcchh-hHhhcCC
Confidence            56899999999999999999999999 899998876542 2344454

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=89.60  E-value=0.58  Score=40.00  Aligned_cols=44  Identities=23%  Similarity=0.137  Sum_probs=36.8

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhH-HHHHhhcCC
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK-FDRGMSCVS  240 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~-~~~~~~lg~  240 (246)
                      .+|.|+|.|.+|...++.++..|. +|++.++++++ .+.+.+.|.
T Consensus        17 ~~I~IIG~G~mG~alA~~L~~~G~-~V~~~~~~~~~~~~~a~~~G~   61 (338)
T 1np3_A           17 KKVAIIGYGSQGHAHACNLKDSGV-DVTVGLRSGSATVAKAEAHGL   61 (338)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC-CEEEECCTTCHHHHHHHHTTC
T ss_pred             CEEEEECchHHHHHHHHHHHHCcC-EEEEEECChHHHHHHHHHCCC
Confidence            479999999999999999999998 88899888765 666666664

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=89.57  E-value=0.51  Score=39.58  Aligned_cols=44  Identities=18%  Similarity=0.209  Sum_probs=37.6

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCC
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVS  240 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~  240 (246)
                      .+|.|+|+|.+|...+..+...|. +|+++++++++.+.+.+.|.
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~   74 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGH-TVTVWNRTAEKCDLFIQEGA   74 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC-CEEEECSSGGGGHHHHHTTC
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHcCC
Confidence            469999999999998888888898 89999999998887776654

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=89.54  E-value=0.36  Score=40.65  Aligned_cols=35  Identities=20%  Similarity=0.196  Sum_probs=30.2

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      .+.+|||+|+ |.+|...+..+...|+ +|++++++.
T Consensus        19 ~~~~vlVTGasG~iG~~l~~~L~~~g~-~V~~~~r~~   54 (330)
T 2pzm_A           19 SHMRILITGGAGCLGSNLIEHWLPQGH-EILVIDNFA   54 (330)
T ss_dssp             TCCEEEEETTTSHHHHHHHHHHGGGTC-EEEEEECCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCC
Confidence            4568999998 9999999988888898 899998854

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=89.41  E-value=0.48  Score=41.49  Aligned_cols=37  Identities=32%  Similarity=0.346  Sum_probs=32.8

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      .+..+++|+|+|.++...+++++.+|+ +|+++|..++
T Consensus       202 ~P~~rL~IfGAGhva~ala~~a~~lg~-~V~v~D~R~~  238 (386)
T 2we8_A          202 APRPRMLVFGAIDFAAAVAQQGAFLGY-RVTVCDARPV  238 (386)
T ss_dssp             CCCCEEEEECCSTHHHHHHHHHHHTTC-EEEEEESCTT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCchh
Confidence            466799999999999999999999999 8999987654

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=89.26  E-value=0.44  Score=40.78  Aligned_cols=38  Identities=29%  Similarity=0.369  Sum_probs=34.2

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHH
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF  232 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~  232 (246)
                      .+.+|.|+|.|.+|...++.++.+|+ +|++++++.++.
T Consensus       145 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~  182 (333)
T 1j4a_A          145 RDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDIFRNPE  182 (333)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCHH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCC-EEEEECCCcchh
Confidence            46799999999999999999999999 999999887654

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=89.13  E-value=0.59  Score=40.28  Aligned_cols=38  Identities=29%  Similarity=0.183  Sum_probs=30.0

Q ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       192 ~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      .+.+.+|||+|+ |.+|...+..+...|+ +|+++++...
T Consensus         8 ~~~~~~vlVTG~tGfIG~~l~~~L~~~G~-~V~~~~r~~~   46 (404)
T 1i24_A            8 HHHGSRVMVIGGDGYCGWATALHLSKKNY-EVCIVDNLVR   46 (404)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCHH
T ss_pred             ccCCCeEEEeCCCcHHHHHHHHHHHhCCC-eEEEEEecCc
Confidence            456789999988 9999999988888898 9999987654

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=89.11  E-value=0.51  Score=40.21  Aligned_cols=36  Identities=22%  Similarity=0.207  Sum_probs=30.3

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHH--cCCCeEEEEcCChh
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKA--AGASRVIGIDIDPK  230 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~--~G~~~vi~~~~~~~  230 (246)
                      .+.+|||+|+ |.+|...+..+..  .|+ +|++++++..
T Consensus         9 ~~~~vlVTGatG~IG~~l~~~L~~~~~g~-~V~~~~r~~~   47 (362)
T 3sxp_A            9 ENQTILITGGAGFVGSNLAFHFQENHPKA-KVVVLDKFRS   47 (362)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHCTTS-EEEEEECCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhhCCCC-eEEEEECCCc
Confidence            3578999988 9999998888888  899 9999987553

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=89.10  E-value=0.37  Score=41.20  Aligned_cols=37  Identities=38%  Similarity=0.477  Sum_probs=33.1

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~  231 (246)
                      .+.+|.|+|.|.+|...++.++..|+ +|++++++.++
T Consensus       145 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~  181 (331)
T 1xdw_A          145 RNCTVGVVGLGRIGRVAAQIFHGMGA-TVIGEDVFEIK  181 (331)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCccH
Confidence            46789999999999999999999999 89999887654

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=89.10  E-value=0.5  Score=41.85  Aligned_cols=41  Identities=24%  Similarity=0.233  Sum_probs=31.8

Q ss_pred             hCCC-CCCCEEEEECC-CHHHHHHHHHHHH-cCCCeEEEEcCChh
Q 025895          189 TAKV-EPGSIVAVFGL-GTVGLAVAEGAKA-AGASRVIGIDIDPK  230 (246)
Q Consensus       189 ~~~~-~~~~~VlI~Ga-g~~G~~ai~~a~~-~G~~~vi~~~~~~~  230 (246)
                      ...+ +.++++||+|+ +++|++.+..+.. .|+ +|++++++.+
T Consensus        54 ~~~~~~~gKvaLVTGASsGIG~AiA~~LA~~~GA-~Vv~~~r~~~   97 (422)
T 3s8m_A           54 RGVRNDGPKKVLVIGASSGYGLASRITAAFGFGA-DTLGVFFEKP   97 (422)
T ss_dssp             TCCCSSSCSEEEEESCSSHHHHHHHHHHHHHHCC-EEEEEECCCC
T ss_pred             ccccccCCCEEEEECCChHHHHHHHHHHHHhCCC-EEEEEeCCch
Confidence            3445 45788999998 8999987777766 899 8998877654

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=89.10  E-value=0.48  Score=39.91  Aligned_cols=35  Identities=31%  Similarity=0.420  Sum_probs=30.1

Q ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       195 ~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      +.+|||+|+ |.+|...+..+...|+ +|+++++++.
T Consensus        21 ~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~   56 (333)
T 2q1w_A           21 MKKVFITGICGQIGSHIAELLLERGD-KVVGIDNFAT   56 (333)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSS
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECCCc
Confidence            468999998 9999999988888898 9999988643

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=89.03  E-value=0.88  Score=38.57  Aligned_cols=46  Identities=20%  Similarity=0.070  Sum_probs=38.0

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcC
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCV  239 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg  239 (246)
                      ...-+|.|+|+|.+|.+.+..+...|. +|++.++++++.+.+++.|
T Consensus        12 ~~~~kI~iIG~G~mG~ala~~L~~~G~-~V~~~~r~~~~~~~l~~~g   57 (335)
T 1z82_A           12 HMEMRFFVLGAGSWGTVFAQMLHENGE-EVILWARRKEIVDLINVSH   57 (335)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHS
T ss_pred             ccCCcEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHhC
Confidence            344689999999999988887777898 8999999999988887765

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=88.88  E-value=0.48  Score=41.06  Aligned_cols=35  Identities=23%  Similarity=0.191  Sum_probs=30.5

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      .-.|+|+|+|+.|++++..+...|. +|+++++.+.
T Consensus        23 ~~dV~IVGaG~aGl~~A~~La~~G~-~V~v~E~~~~   57 (407)
T 3rp8_A           23 HMKAIVIGAGIGGLSAAVALKQSGI-DCDVYEAVKE   57 (407)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCCC
Confidence            3579999999999999999999999 8999988753

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=88.74  E-value=0.46  Score=42.65  Aligned_cols=42  Identities=19%  Similarity=0.081  Sum_probs=34.7

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCChhHHHHHhh
Q 025895          195 GSIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       195 ~~~VlI~Gag~~G~~ai~~a~~~-G~~~vi~~~~~~~~~~~~~~  237 (246)
                      +.+|+|+|+|.+|..++..+... ++ +|++++++.++.+.+.+
T Consensus        23 ~k~VlIiGAGgiG~aia~~L~~~~g~-~V~v~~R~~~ka~~la~   65 (467)
T 2axq_A           23 GKNVLLLGSGFVAQPVIDTLAANDDI-NVTVACRTLANAQALAK   65 (467)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHTSTTE-EEEEEESSHHHHHHHHG
T ss_pred             CCEEEEECChHHHHHHHHHHHhCCCC-eEEEEECCHHHHHHHHH
Confidence            46899999999999988888877 67 89999999988765543

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=88.67  E-value=0.42  Score=40.92  Aligned_cols=37  Identities=35%  Similarity=0.438  Sum_probs=33.3

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~  231 (246)
                      .+.+|.|+|.|.+|...++.++.+|+ +|++.+++.++
T Consensus       144 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~  180 (333)
T 1dxy_A          144 GQQTVGVMGTGHIGQVAIKLFKGFGA-KVIAYDPYPMK  180 (333)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCS
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCcch
Confidence            56899999999999999999999999 99999887653

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=88.64  E-value=0.53  Score=40.17  Aligned_cols=37  Identities=30%  Similarity=0.589  Sum_probs=33.3

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~  231 (246)
                      .|++|.|+|.|.+|...++.++..|+ +|++++++.++
T Consensus       136 ~gktvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~  172 (324)
T 3evt_A          136 TGQQLLIYGTGQIGQSLAAKASALGM-HVIGVNTTGHP  172 (324)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSCCC
T ss_pred             cCCeEEEECcCHHHHHHHHHHHhCCC-EEEEECCCcch
Confidence            47899999999999999999999999 99999887643

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=88.63  E-value=0.48  Score=39.76  Aligned_cols=37  Identities=35%  Similarity=0.468  Sum_probs=33.5

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~  231 (246)
                      .|.+|.|+|.|.+|...++.++..|+ +|++.+++.++
T Consensus       121 ~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~  157 (290)
T 3gvx_A          121 YGKALGILGYGGIGRRVAHLAKAFGM-RVIAYTRSSVD  157 (290)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSCCC
T ss_pred             ecchheeeccCchhHHHHHHHHhhCc-EEEEEeccccc
Confidence            46899999999999999999999999 99999987654

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=88.61  E-value=0.94  Score=38.27  Aligned_cols=34  Identities=21%  Similarity=0.327  Sum_probs=29.9

Q ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       195 ~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      +.+|||+|+ |.+|...+..+...|+ +|+++++++
T Consensus        27 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~   61 (352)
T 1sb8_A           27 PKVWLITGVAGFIGSNLLETLLKLDQ-KVVGLDNFA   61 (352)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCS
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence            368999998 9999999998888898 899998865

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=88.55  E-value=0.94  Score=38.19  Aligned_cols=42  Identities=29%  Similarity=0.273  Sum_probs=35.7

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcC
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCV  239 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg  239 (246)
                      .+|.|+|+|.+|.+.+..+...|. +|..+ +++++.+.+++.|
T Consensus        20 ~kI~IiGaGa~G~~~a~~L~~~G~-~V~l~-~~~~~~~~i~~~g   61 (318)
T 3hwr_A           20 MKVAIMGAGAVGCYYGGMLARAGH-EVILI-ARPQHVQAIEATG   61 (318)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTC-EEEEE-CCHHHHHHHHHHC
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCC-eEEEE-EcHhHHHHHHhCC
Confidence            579999999999988888888898 89988 8888888877655

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=88.55  E-value=0.45  Score=39.66  Aligned_cols=34  Identities=21%  Similarity=0.294  Sum_probs=29.9

Q ss_pred             CEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          196 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       196 ~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      .+|||+|+ |.+|...+..+...|. +|+++++++.
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~l~R~~~   46 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGH-PTYVFTRPNS   46 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTC-CEEEEECTTC
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCC-cEEEEECCCC
Confidence            57999998 9999999999988998 8999988764

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=88.46  E-value=0.79  Score=40.99  Aligned_cols=40  Identities=38%  Similarity=0.623  Sum_probs=34.8

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~  236 (246)
                      .+|.|+|+|.+|...++.+...|+ .|+++++++++++.++
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~D~~~~~~~~~~   77 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGI-SVVAVESDPKQLDAAK   77 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHH
Confidence            579999999999998888888899 9999999998877554

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=88.46  E-value=0.33  Score=40.61  Aligned_cols=45  Identities=18%  Similarity=0.155  Sum_probs=39.1

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      .+|.|+|.|.+|...++.+...|+ +|++.++++++.+.+.+.|..
T Consensus        16 ~~I~vIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~   60 (296)
T 3qha_A           16 LKLGYIGLGNMGAPMATRMTEWPG-GVTVYDIRIEAMTPLAEAGAT   60 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHTTSTT-CEEEECSSTTTSHHHHHTTCE
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHCCCE
Confidence            479999999999998888888898 899999999998888776654

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=88.43  E-value=0.57  Score=39.64  Aligned_cols=38  Identities=37%  Similarity=0.494  Sum_probs=33.6

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~  231 (246)
                      -.+.+|.|+|.|.+|...++.++..|+ +|++.+++.++
T Consensus       142 l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~  179 (311)
T 2cuk_A          142 LQGLTLGLVGMGRIGQAVAKRALAFGM-RVVYHARTPKP  179 (311)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCS
T ss_pred             CCCCEEEEEEECHHHHHHHHHHHHCCC-EEEEECCCCcc
Confidence            356799999999999999999999999 99999987654

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=88.41  E-value=1  Score=36.94  Aligned_cols=50  Identities=14%  Similarity=0.292  Sum_probs=40.5

Q ss_pred             hhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       186 l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      +....+++++.+||-+|.|. |..+..+++..|. +|++++.+++.++.+++
T Consensus        56 ~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~  105 (287)
T 1kpg_A           56 ALGKLGLQPGMTLLDVGCGW-GATMMRAVEKYDV-NVVGLTLSKNQANHVQQ  105 (287)
T ss_dssp             HHTTTTCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHH
T ss_pred             HHHHcCCCCcCEEEEECCcc-cHHHHHHHHHcCC-EEEEEECCHHHHHHHHH
Confidence            34556778899999998864 6777888877798 99999999998877765

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=88.40  E-value=0.47  Score=41.07  Aligned_cols=34  Identities=32%  Similarity=0.380  Sum_probs=30.1

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      ...|+|+|+|+.|++++..+...|. +|+++++.+
T Consensus        26 ~~dV~IVGaG~aGl~~A~~L~~~G~-~v~v~E~~~   59 (398)
T 2xdo_A           26 DKNVAIIGGGPVGLTMAKLLQQNGI-DVSVYERDN   59 (398)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTC-EEEEEECSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            3579999999999999999999999 999998765

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=88.29  E-value=0.65  Score=39.96  Aligned_cols=38  Identities=24%  Similarity=0.406  Sum_probs=33.7

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHH
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF  232 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~  232 (246)
                      .|++|.|+|.|.+|...++.++..|+ +|++.+++..+.
T Consensus       172 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~  209 (345)
T 4g2n_A          172 TGRRLGIFGMGRIGRAIATRARGFGL-AIHYHNRTRLSH  209 (345)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHTTTC-EEEEECSSCCCH
T ss_pred             CCCEEEEEEeChhHHHHHHHHHHCCC-EEEEECCCCcch
Confidence            46799999999999999999999999 999999886443

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=88.24  E-value=0.78  Score=39.57  Aligned_cols=44  Identities=20%  Similarity=0.186  Sum_probs=37.9

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCC
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVS  240 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~  240 (246)
                      .+|.|+|+|.+|.+.+..+...|. +|...++++++.+.+++.+.
T Consensus        30 mkI~VIGaG~mG~alA~~La~~G~-~V~l~~r~~~~~~~i~~~~~   73 (356)
T 3k96_A           30 HPIAILGAGSWGTALALVLARKGQ-KVRLWSYESDHVDEMQAEGV   73 (356)
T ss_dssp             SCEEEECCSHHHHHHHHHHHTTTC-CEEEECSCHHHHHHHHHHSS
T ss_pred             CeEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCC
Confidence            469999999999998888888898 89999999999888877553

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=88.19  E-value=1  Score=35.81  Aligned_cols=49  Identities=16%  Similarity=0.236  Sum_probs=39.3

Q ss_pred             hhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       188 ~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      ....++++++||-+|+|. |..+..+++..|..+|++++.+++.++.+++
T Consensus        68 ~~~~~~~~~~VLDlGcG~-G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~  116 (230)
T 1fbn_A           68 KVMPIKRDSKILYLGASA-GTTPSHVADIADKGIVYAIEYAPRIMRELLD  116 (230)
T ss_dssp             CCCCCCTTCEEEEESCCS-SHHHHHHHHHTTTSEEEEEESCHHHHHHHHH
T ss_pred             cccCCCCCCEEEEEcccC-CHHHHHHHHHcCCcEEEEEECCHHHHHHHHH
Confidence            445677889999999875 7888888888774599999999988876654

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=88.10  E-value=0.6  Score=37.13  Aligned_cols=38  Identities=21%  Similarity=0.253  Sum_probs=31.0

Q ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCC-eEEEEcCChhHH
Q 025895          195 GSIVAVFGL-GTVGLAVAEGAKAAGAS-RVIGIDIDPKKF  232 (246)
Q Consensus       195 ~~~VlI~Ga-g~~G~~ai~~a~~~G~~-~vi~~~~~~~~~  232 (246)
                      +.++||+|+ |.+|...++.+...|+. +|+++++++++.
T Consensus        18 ~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~   57 (242)
T 2bka_A           18 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTF   57 (242)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCc
Confidence            478999998 99999988888888862 788888877543

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=88.04  E-value=0.57  Score=40.16  Aligned_cols=35  Identities=23%  Similarity=0.260  Sum_probs=30.4

Q ss_pred             CEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 025895          196 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (246)
Q Consensus       196 ~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~  231 (246)
                      .+|||+|+ |.+|...+..+...|+ +|++++++.++
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~-~V~~~~r~~~~   64 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGY-EVHGLIRRSSN   64 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCSS
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC-EEEEEecCCcc
Confidence            58999998 9999999998888998 89999887543

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=88.01  E-value=1.3  Score=35.79  Aligned_cols=37  Identities=38%  Similarity=0.451  Sum_probs=32.8

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~  231 (246)
                      ...+|.|+|+|.+|...++.+...|. +|++.++++++
T Consensus        18 ~~~kIgiIG~G~mG~alA~~L~~~G~-~V~~~~r~~~~   54 (245)
T 3dtt_A           18 QGMKIAVLGTGTVGRTMAGALADLGH-EVTIGTRDPKA   54 (245)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCChhh
Confidence            34789999999999999998888998 89999999987

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=87.95  E-value=0.4  Score=42.03  Aligned_cols=38  Identities=16%  Similarity=0.137  Sum_probs=32.0

Q ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       192 ~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      ..+..+|||+|+ |.+|...+..+...|+ +|++++++++
T Consensus        66 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~R~~~  104 (427)
T 4f6c_A           66 HRPLGNTLLTGATGFLGAYLIEALQGYSH-RIYCFIRADN  104 (427)
T ss_dssp             CCCCEEEEEECTTSHHHHHHHHHHTTTEE-EEEEEEECSS
T ss_pred             CCCCCEEEEecCCcHHHHHHHHHHHcCCC-EEEEEECCCC
Confidence            345568999998 9999998888877888 9999988877

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=87.87  E-value=0.61  Score=40.03  Aligned_cols=34  Identities=26%  Similarity=0.157  Sum_probs=30.0

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      ...|+|+|+|+.|+.++..+...|. +|+++++.+
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~-~v~viE~~~   44 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGW-DVRLHEKSS   44 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Confidence            3579999999999999999999999 999998765

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=87.86  E-value=1.1  Score=35.27  Aligned_cols=46  Identities=24%  Similarity=0.274  Sum_probs=37.7

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-----CCeEEEEcCChhHHHHHhh
Q 025895          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAG-----ASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       191 ~~~~~~~VlI~Gag~~G~~ai~~a~~~G-----~~~vi~~~~~~~~~~~~~~  237 (246)
                      .++++++||-+|.|. |..+..+++..+     ..+|++++.+++..+.+++
T Consensus        77 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~  127 (227)
T 2pbf_A           77 VLKPGSRAIDVGSGS-GYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLE  127 (227)
T ss_dssp             TSCTTCEEEEESCTT-SHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHH
T ss_pred             hCCCCCEEEEECCCC-CHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHH
Confidence            578889999999876 788888888876     2389999999988877765

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=87.70  E-value=1.2  Score=37.28  Aligned_cols=41  Identities=27%  Similarity=0.257  Sum_probs=34.1

Q ss_pred             CCCCEEEEECCC-HHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 025895          193 EPGSIVAVFGLG-TVGLAVAEGAKAAGASRVIGIDIDPKKFDR  234 (246)
Q Consensus       193 ~~~~~VlI~Gag-~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~  234 (246)
                      -.|++++|+|.| .+|..++.++...|+ +|.++.+..+.++.
T Consensus       158 l~Gk~vvVvGrs~iVG~p~A~lL~~~gA-tVtv~h~~t~~L~~  199 (285)
T 3p2o_A          158 LEGKDAVIIGASNIVGRPMATMLLNAGA-TVSVCHIKTKDLSL  199 (285)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTCSCHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCchhHHH
Confidence            478999999985 589999999999999 89988776655543

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=87.69  E-value=1.2  Score=37.29  Aligned_cols=40  Identities=23%  Similarity=0.194  Sum_probs=33.0

Q ss_pred             CCCCEEEEECCC-HHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 025895          193 EPGSIVAVFGLG-TVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (246)
Q Consensus       193 ~~~~~VlI~Gag-~~G~~ai~~a~~~G~~~vi~~~~~~~~~~  233 (246)
                      -.|++++|+|.| .+|..++.++...|+ +|.++.+....++
T Consensus       159 l~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs~t~~L~  199 (285)
T 3l07_A          159 TEGAYAVVVGASNVVGKPVSQLLLNAKA-TVTTCHRFTTDLK  199 (285)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTCSSHH
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCchhHH
Confidence            478999999985 589999999999999 8888876554444

>3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans}

Probab=87.64  E-value=0.44  Score=41.33  Aligned_cols=38  Identities=21%  Similarity=0.265  Sum_probs=33.4

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      ..+..+++|+|+|.++...+++++.+|+ +|+++|..++
T Consensus       196 ~~p~~~L~I~GaGhva~aLa~la~~lgf-~V~v~D~R~~  233 (362)
T 3on5_A          196 YSPKERLIIFGAGPDVPPLVTFASNVGF-YTVVTDWRPN  233 (362)
T ss_dssp             ECCCEEEEEECCSTTHHHHHHHHHHHTE-EEEEEESCGG
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEECCCcc
Confidence            3456789999999999999999999999 8999987765

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=87.63  E-value=0.67  Score=39.05  Aligned_cols=35  Identities=20%  Similarity=0.148  Sum_probs=29.9

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      .+.+|||+|+ |.+|...++.+...|+ +|++++++.
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~   61 (343)
T 2b69_A           26 DRKRILITGGAGFVGSHLTDKLMMDGH-EVTVVDNFF   61 (343)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCS
T ss_pred             CCCEEEEEcCccHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence            3478999998 9999999998888898 899998764

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=87.50  E-value=0.76  Score=39.39  Aligned_cols=36  Identities=25%  Similarity=0.198  Sum_probs=30.9

Q ss_pred             CCEEEEECC-CHHHHHHHHHHHHcC-CCeEEEEcCChhH
Q 025895          195 GSIVAVFGL-GTVGLAVAEGAKAAG-ASRVIGIDIDPKK  231 (246)
Q Consensus       195 ~~~VlI~Ga-g~~G~~ai~~a~~~G-~~~vi~~~~~~~~  231 (246)
                      +.+|||+|+ |.+|...+..+...| . +|+++++++++
T Consensus        32 ~~~ilVtGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~   69 (377)
T 2q1s_A           32 NTNVMVVGGAGFVGSNLVKRLLELGVN-QVHVVDNLLSA   69 (377)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCS-EEEEECCCTTC
T ss_pred             CCEEEEECCccHHHHHHHHHHHHcCCc-eEEEEECCCCC
Confidence            468999998 999999999888899 8 99999887543

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=87.46  E-value=0.49  Score=37.68  Aligned_cols=44  Identities=25%  Similarity=0.252  Sum_probs=35.2

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEE-EcCChhHHHHHh-hcCC
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIG-IDIDPKKFDRGM-SCVS  240 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~-~~~~~~~~~~~~-~lg~  240 (246)
                      .+|.|+|+|.+|...+..+...|. +|+. .++++++.+.+. ++|.
T Consensus        24 mkI~IIG~G~mG~~la~~l~~~g~-~V~~v~~r~~~~~~~l~~~~g~   69 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERFTAAQI-PAIIANSRGPASLSSVTDRFGA   69 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHTTC-CEEEECTTCGGGGHHHHHHHTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCCHHHHHHHHHHhCC
Confidence            368999999999998888888898 6777 899998877653 4554

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=87.44  E-value=1.4  Score=35.71  Aligned_cols=50  Identities=26%  Similarity=0.326  Sum_probs=40.2

Q ss_pred             hhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       186 l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      +....+++++.+||-+|.|. |..+..+++..+. +|++++.+++.++.+++
T Consensus        53 l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~  102 (273)
T 3bus_A           53 MIALLDVRSGDRVLDVGCGI-GKPAVRLATARDV-RVTGISISRPQVNQANA  102 (273)
T ss_dssp             HHHHSCCCTTCEEEEESCTT-SHHHHHHHHHSCC-EEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEeCCCC-CHHHHHHHHhcCC-EEEEEeCCHHHHHHHHH
Confidence            44667788999999998864 6777788887787 99999999988776654

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=87.41  E-value=0.94  Score=40.76  Aligned_cols=36  Identities=28%  Similarity=0.314  Sum_probs=30.9

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      .....|+|+|+|+.|+.++..+...|. +|++++..+
T Consensus        90 ~~~~dVvIVGgG~aGl~aA~~La~~G~-~V~liEk~~  125 (497)
T 2bry_A           90 CTNTKCLVVGAGPCGLRAAVELALLGA-RVVLVEKRI  125 (497)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCS
T ss_pred             cCCCCEEEECccHHHHHHHHHHHHCCC-eEEEEEecc
Confidence            445789999999999999888888999 899998764

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=87.30  E-value=0.57  Score=41.22  Aligned_cols=33  Identities=18%  Similarity=0.181  Sum_probs=29.5

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      ..|+|+|+|+.|+.++..+...|. +|++++..+
T Consensus        23 ~~ViIVGaGpaGl~~A~~La~~G~-~V~viE~~~   55 (430)
T 3ihm_A           23 KRIGIVGAGTAGLHLGLFLRQHDV-DVTVYTDRK   55 (430)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHTTC-EEEEEESCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCC-eEEEEcCCC
Confidence            579999999999999999989999 899998765

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=87.26  E-value=0.93  Score=38.06  Aligned_cols=35  Identities=31%  Similarity=0.436  Sum_probs=31.5

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      ..+|+|+|+|++|..++..+-+.|..++..+|...
T Consensus        36 ~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           36 TFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             GCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            46899999999999999999999999999998765

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=87.25  E-value=1.2  Score=37.37  Aligned_cols=46  Identities=24%  Similarity=0.255  Sum_probs=38.4

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC--hhHHHHHhhcCCC
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID--PKKFDRGMSCVSS  241 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~--~~~~~~~~~lg~~  241 (246)
                      .+|.|+|.|.+|...++.+...|+.+|++.+++  +++.+.+++.|..
T Consensus        25 ~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~   72 (312)
T 3qsg_A           25 MKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVS   72 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCE
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCE
Confidence            479999999999998888888887689999996  6788888777754

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=87.24  E-value=0.69  Score=39.77  Aligned_cols=37  Identities=38%  Similarity=0.486  Sum_probs=33.6

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~  231 (246)
                      .|++|.|+|.|.+|...++.++..|+ +|++.+++.++
T Consensus       147 ~gktvgIiGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~  183 (343)
T 2yq5_A          147 YNLTVGLIGVGHIGSAVAEIFSAMGA-KVIAYDVAYNP  183 (343)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCG
T ss_pred             CCCeEEEEecCHHHHHHHHHHhhCCC-EEEEECCChhh
Confidence            47899999999999999999999999 99999988654

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=87.22  E-value=0.52  Score=43.73  Aligned_cols=33  Identities=27%  Similarity=0.321  Sum_probs=27.4

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcC
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI  227 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~  227 (246)
                      .++++||+|+ +++|...+..+...|+ +|+++++
T Consensus        18 ~gk~~lVTGas~GIG~aiA~~La~~Ga-~Vv~~~r   51 (613)
T 3oml_A           18 DGRVAVVTGAGAGLGREYALLFAERGA-KVVVNDL   51 (613)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEC--
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            4678999988 8999998888888999 8999876

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=87.06  E-value=0.72  Score=39.57  Aligned_cols=42  Identities=19%  Similarity=0.117  Sum_probs=35.8

Q ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcC
Q 025895          197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCV  239 (246)
Q Consensus       197 ~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg  239 (246)
                      +|.|+|+|.+|...+..+...|. +|+++++++++.+.+.+.+
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~-~V~~~~r~~~~~~~l~~~~   58 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCR-EVCVWHMNEEEVRLVNEKR   58 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEE-EEEEECSCHHHHHHHHHHT
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHcC
Confidence            69999999999988777777788 8999999999888776654

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=87.02  E-value=0.98  Score=34.07  Aligned_cols=48  Identities=25%  Similarity=0.238  Sum_probs=38.1

Q ss_pred             hhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       187 ~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      .......++++||-+|+|. |..+..+++.. . ++++++.+++.++.+++
T Consensus        26 ~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~-~-~v~~~D~~~~~~~~a~~   73 (192)
T 1l3i_A           26 MCLAEPGKNDVAVDVGCGT-GGVTLELAGRV-R-RVYAIDRNPEAISTTEM   73 (192)
T ss_dssp             HHHHCCCTTCEEEEESCTT-SHHHHHHHTTS-S-EEEEEESCHHHHHHHHH
T ss_pred             HHhcCCCCCCEEEEECCCC-CHHHHHHHHhc-C-EEEEEECCHHHHHHHHH
Confidence            3445678889999999876 77777777766 4 99999999988877765

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=86.96  E-value=1.2  Score=42.75  Aligned_cols=38  Identities=21%  Similarity=0.253  Sum_probs=31.6

Q ss_pred             CCCCCEEEEECC-CHHHHHHHHHHH-HcCCCeEEEEcCCh
Q 025895          192 VEPGSIVAVFGL-GTVGLAVAEGAK-AAGASRVIGIDIDP  229 (246)
Q Consensus       192 ~~~~~~VlI~Ga-g~~G~~ai~~a~-~~G~~~vi~~~~~~  229 (246)
                      +.+++++||+|+ |++|...++.+- ..|++.|+.++++.
T Consensus       527 ~~~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~  566 (795)
T 3slk_A          527 WDAAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRG  566 (795)
T ss_dssp             CCTTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSG
T ss_pred             cccccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCc
Confidence            467899999987 999998877665 78997799998883

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=86.95  E-value=1.5  Score=34.44  Aligned_cols=45  Identities=29%  Similarity=0.414  Sum_probs=36.5

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHhh
Q 025895          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~-~~vi~~~~~~~~~~~~~~  237 (246)
                      ++++++||-+|+|. |..+..+++..|. .+|++++.+++.++.+++
T Consensus        75 ~~~~~~vLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~  120 (226)
T 1i1n_A           75 LHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVN  120 (226)
T ss_dssp             SCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEEcCCc-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Confidence            77889999998874 7777888888763 289999999998877654

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=86.92  E-value=0.64  Score=41.90  Aligned_cols=37  Identities=27%  Similarity=0.416  Sum_probs=30.3

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      .+..-.|+|+|+|+.|++++..+...|. +|+++++.+
T Consensus         9 ~~~~~dVlIVGaGpaGl~~A~~La~~G~-~v~vlE~~~   45 (499)
T 2qa2_A            9 HRSDASVIVVGAGPAGLMLAGELRLGGV-DVMVLEQLP   45 (499)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESCS
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCC
Confidence            3445579999999999999999999999 899998754

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=86.89  E-value=0.73  Score=41.62  Aligned_cols=36  Identities=31%  Similarity=0.352  Sum_probs=32.2

Q ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 025895          195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (246)
Q Consensus       195 ~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~  231 (246)
                      +.+|||+|+ |.+|...+..+...|. +|+++++++.+
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~-~V~~l~R~~~~  183 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGH-EVIQLVRKEPK  183 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCCC
Confidence            578999998 9999999999999999 99999988654

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=86.88  E-value=0.6  Score=42.09  Aligned_cols=38  Identities=24%  Similarity=0.350  Sum_probs=31.0

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       191 ~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      +..+.-.|+|+|+|+.|++++..+...|. +|+++++.+
T Consensus         7 ~~~~~~dVlIVGaGpaGl~~A~~La~~G~-~v~vlE~~~   44 (500)
T 2qa1_A            7 HHRSDAAVIVVGAGPAGMMLAGELRLAGV-EVVVLERLV   44 (500)
T ss_dssp             -CCSBCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCC
T ss_pred             CccCCCCEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            34445569999999999999999989999 899998754

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=86.79  E-value=0.76  Score=39.46  Aligned_cols=36  Identities=22%  Similarity=0.305  Sum_probs=30.8

Q ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 025895          195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (246)
Q Consensus       195 ~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~  231 (246)
                      ..+|||+|+ |.+|...++.+...|+ +|+++++++.+
T Consensus        29 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~   65 (379)
T 2c5a_A           29 NLKISITGAGGFIASHIARRLKHEGH-YVIASDWKKNE   65 (379)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCS
T ss_pred             CCeEEEECCccHHHHHHHHHHHHCCC-eEEEEECCCcc
Confidence            468999998 9999999988888898 89999887543

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=86.74  E-value=0.66  Score=36.89  Aligned_cols=46  Identities=15%  Similarity=0.352  Sum_probs=37.1

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       191 ~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      ...++++||-+|.| .|..++.+++..+..+|++++.+++.++.+++
T Consensus        51 ~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~   96 (233)
T 2gpy_A           51 KMAAPARILEIGTA-IGYSAIRMAQALPEATIVSIERDERRYEEAHK   96 (233)
T ss_dssp             HHHCCSEEEEECCT-TSHHHHHHHHHCTTCEEEEECCCHHHHHHHHH
T ss_pred             hccCCCEEEEecCC-CcHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Confidence            34577899999987 68888889988743499999999998887765

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=86.72  E-value=0.75  Score=39.28  Aligned_cols=34  Identities=26%  Similarity=0.292  Sum_probs=29.7

Q ss_pred             CEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          196 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       196 ~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      .+|||+|+ |.+|...++.+...|+ +|++++++++
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~   59 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGY-EVHGIVRRSS   59 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCS
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCcc
Confidence            57999998 9999999998888998 9999988754

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=86.56  E-value=0.85  Score=38.88  Aligned_cols=36  Identities=25%  Similarity=0.567  Sum_probs=32.7

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      .|.+|.|+|.|.+|...++.++..|+ +|++.+++.+
T Consensus       139 ~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~~  174 (324)
T 3hg7_A          139 KGRTLLILGTGSIGQHIAHTGKHFGM-KVLGVSRSGR  174 (324)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             ccceEEEEEECHHHHHHHHHHHhCCC-EEEEEcCChH
Confidence            47899999999999999999999999 9999988753

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=86.49  E-value=1.1  Score=38.40  Aligned_cols=36  Identities=25%  Similarity=0.344  Sum_probs=32.0

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      .+.+|+|+|+|++|..++..+-..|..++..+|...
T Consensus        33 ~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~   68 (340)
T 3rui_A           33 KNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT   68 (340)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             hCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence            457999999999999999999999999999987753

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=86.48  E-value=1.6  Score=38.57  Aligned_cols=34  Identities=44%  Similarity=0.480  Sum_probs=29.6

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEE-EEcC
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVI-GIDI  227 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi-~~~~  227 (246)
                      -.+.+|+|.|.|.+|..+++++...|+ +|+ +.|+
T Consensus       216 l~gk~vaVqG~GnVG~~~a~~L~~~Ga-kVVavsD~  250 (419)
T 3aoe_E          216 LRGARVVVQGLGQVGAAVALHAERLGM-RVVAVATS  250 (419)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEEET
T ss_pred             ccCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEEcC
Confidence            357899999999999999999999999 888 5555

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=86.47  E-value=0.68  Score=39.26  Aligned_cols=36  Identities=19%  Similarity=0.366  Sum_probs=29.3

Q ss_pred             CCEEEEECC-CHHHHHHHHHHHHcC-CCeEEEEcCChhH
Q 025895          195 GSIVAVFGL-GTVGLAVAEGAKAAG-ASRVIGIDIDPKK  231 (246)
Q Consensus       195 ~~~VlI~Ga-g~~G~~ai~~a~~~G-~~~vi~~~~~~~~  231 (246)
                      +.+|||+|+ |.+|...+..+...| . +|+++++++.+
T Consensus        46 ~~~vlVtGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~   83 (357)
T 2x6t_A           46 GRMIIVTGGAGFIGSNIVKALNDKGIT-DILVVDNLKDG   83 (357)
T ss_dssp             --CEEEETTTSHHHHHHHHHHHHTTCC-CEEEEECCSSG
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCc-EEEEEecCCCc
Confidence            467999998 999999999888889 6 89999886543

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=86.45  E-value=0.6  Score=39.65  Aligned_cols=36  Identities=28%  Similarity=0.282  Sum_probs=32.8

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      .+.+|.|+|.|.+|...++.++..|+ +|++.+++++
T Consensus       138 ~g~tvGIiG~G~IG~~vA~~l~~~G~-~V~~~dr~~~  173 (315)
T 3pp8_A          138 EEFSVGIMGAGVLGAKVAESLQAWGF-PLRCWSRSRK  173 (315)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTC-CEEEEESSCC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCCch
Confidence            47899999999999999999999999 8999988765

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=86.42  E-value=0.75  Score=37.04  Aligned_cols=35  Identities=26%  Similarity=0.279  Sum_probs=30.2

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      .+.+|||+|+|.+|...+..+...|+ .|++++...
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~GA-~VtVvap~~   64 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQEGA-AITVVAPTV   64 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGGCC-CEEEECSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCC
Confidence            35789999999999999999999999 788886554

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=86.39  E-value=1  Score=40.14  Aligned_cols=36  Identities=33%  Similarity=0.514  Sum_probs=30.4

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      +++++||+|+ |++|...++.+...|+ +|+.+++++.
T Consensus       212 ~gk~~LVTGgsgGIG~aiA~~La~~Ga-~Vvl~~r~~~  248 (454)
T 3u0b_A          212 DGKVAVVTGAARGIGATIAEVFARDGA-TVVAIDVDGA  248 (454)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECGGG
T ss_pred             CCCEEEEeCCchHHHHHHHHHHHHCCC-EEEEEeCCcc
Confidence            5688999987 9999998888888899 8999988643

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=86.38  E-value=1.6  Score=36.71  Aligned_cols=51  Identities=20%  Similarity=0.251  Sum_probs=40.0

Q ss_pred             hhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHhh
Q 025895          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       186 l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~-~~vi~~~~~~~~~~~~~~  237 (246)
                      +.....++++++||-+|.|. |..+..+++..+. .+|++++.+++.++.+++
T Consensus        67 l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~  118 (317)
T 1dl5_A           67 FMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKR  118 (317)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCcCEEEEecCCc-hHHHHHHHHhcCCCCEEEEEECCHHHHHHHHH
Confidence            44566788999999999875 7777888877542 379999999998887765

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=86.34  E-value=1.7  Score=36.50  Aligned_cols=41  Identities=24%  Similarity=0.179  Sum_probs=33.5

Q ss_pred             CCCCCEEEEECCC-HHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 025895          192 VEPGSIVAVFGLG-TVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (246)
Q Consensus       192 ~~~~~~VlI~Gag-~~G~~ai~~a~~~G~~~vi~~~~~~~~~~  233 (246)
                      --.|++++|+|.| .+|..++.++...|+ +|.++.+....++
T Consensus       162 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~~~~T~~l~  203 (300)
T 4a26_A          162 EMAGKRAVVLGRSNIVGAPVAALLMKENA-TVTIVHSGTSTED  203 (300)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTSCHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCCCCch
Confidence            3478999999985 589999999999999 8999987544443

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=86.11  E-value=1.2  Score=39.45  Aligned_cols=40  Identities=25%  Similarity=0.261  Sum_probs=33.7

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      -+|.|+|+|.+|+..+..+.. |. +|+++++++++.+.+++
T Consensus        37 mkIaVIGlG~mG~~lA~~La~-G~-~V~~~D~~~~~v~~l~~   76 (432)
T 3pid_A           37 MKITISGTGYVGLSNGVLIAQ-NH-EVVALDIVQAKVDMLNQ   76 (432)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT-TS-EEEEECSCHHHHHHHHT
T ss_pred             CEEEEECcCHHHHHHHHHHHc-CC-eEEEEecCHHHhhHHhc
Confidence            479999999999886666555 88 99999999999887765

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=86.10  E-value=1.7  Score=36.54  Aligned_cols=47  Identities=9%  Similarity=0.047  Sum_probs=36.7

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCChhHHHHHhh-cC
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRGMS-CV  239 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~-G~~~vi~~~~~~~~~~~~~~-lg  239 (246)
                      ....+|.|+|+|.+|...+..+... |+++|.+.++++++.+.+.+ ++
T Consensus       133 ~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~  181 (312)
T 2i99_A          133 PSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQ  181 (312)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSS
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhh
Confidence            4567899999999998877766554 87789999999988775543 34

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=86.10  E-value=1  Score=36.74  Aligned_cols=34  Identities=32%  Similarity=0.388  Sum_probs=30.1

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      +.+|+|+|+|++|..++..+...|..++..+|..
T Consensus        28 ~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d   61 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDD   61 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCC
T ss_pred             cCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            4689999999999999999999999888888654

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=86.09  E-value=1.1  Score=39.70  Aligned_cols=37  Identities=30%  Similarity=0.366  Sum_probs=31.7

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      ......|+|+|+|..|+.++..++..|. +|++++..+
T Consensus         8 ~~~~~~v~IIGaG~aGl~aA~~L~~~g~-~v~v~E~~~   44 (489)
T 2jae_A            8 VKGSHSVVVLGGGPAGLCSAFELQKAGY-KVTVLEART   44 (489)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             ccCCCCEEEECCCHHHHHHHHHHHHCCC-CEEEEeccC
Confidence            3455689999999999999999999998 899997664

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=86.07  E-value=0.74  Score=41.94  Aligned_cols=32  Identities=22%  Similarity=0.261  Sum_probs=28.7

Q ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       197 ~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      .|+|+|+|+.|++++..+...|. +|+++++.+
T Consensus        28 dVlIVGaGpaGl~~A~~La~~G~-~V~vlEr~~   59 (549)
T 2r0c_A           28 DVLILGGGPVGMALALDLAHRQV-GHLVVEQTD   59 (549)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            69999999999999999988999 899998765

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=86.01  E-value=1.1  Score=36.38  Aligned_cols=42  Identities=12%  Similarity=0.087  Sum_probs=34.4

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      -+|.|+|+|.+|...+..+...|...|.++++++++.+.+.+
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~   52 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQ   52 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHH
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHH
Confidence            368899999999988888777898338899999988876654

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=85.77  E-value=0.9  Score=38.70  Aligned_cols=33  Identities=18%  Similarity=0.125  Sum_probs=28.4

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      -.|+|+|+|..|+.++..+...|. +|++++..+
T Consensus        18 ~dvvIIGgG~~Gl~~A~~La~~G~-~V~llE~~~   50 (382)
T 1ryi_A           18 YEAVVIGGGIIGSAIAYYLAKENK-NTALFESGT   50 (382)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCC-cEEEEeCCC
Confidence            468999999999998888888899 899998753

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=85.62  E-value=0.91  Score=35.92  Aligned_cols=46  Identities=24%  Similarity=0.400  Sum_probs=36.9

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC------CeEEEEcCChhHHHHHhh
Q 025895          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGA------SRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       191 ~~~~~~~VlI~Gag~~G~~ai~~a~~~G~------~~vi~~~~~~~~~~~~~~  237 (246)
                      .++++++||-+|.|. |..+..+++..+.      .+|++++.+++.++.+++
T Consensus        81 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~  132 (227)
T 1r18_A           81 HLKPGARILDVGSGS-GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKA  132 (227)
T ss_dssp             TCCTTCEEEEESCTT-SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHH
T ss_pred             hCCCCCEEEEECCCc-cHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHH
Confidence            477889999999875 7888888887662      389999999988777654

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=85.57  E-value=1.7  Score=36.53  Aligned_cols=40  Identities=20%  Similarity=0.169  Sum_probs=33.4

Q ss_pred             CCCCEEEEECCC-HHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 025895          193 EPGSIVAVFGLG-TVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (246)
Q Consensus       193 ~~~~~VlI~Gag-~~G~~ai~~a~~~G~~~vi~~~~~~~~~~  233 (246)
                      -.+.+++|+|.| .+|.-+++++...|+ +|.++.+..+.++
T Consensus       163 l~gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs~t~~L~  203 (301)
T 1a4i_A          163 IAGRHAVVVGRSKIVGAPMHDLLLWNNA-TVTTCHSKTAHLD  203 (301)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTCSSHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHhCCC-eEEEEECCcccHH
Confidence            478999999997 689999999999999 8998876655443

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=85.55  E-value=2.2  Score=36.09  Aligned_cols=44  Identities=18%  Similarity=0.206  Sum_probs=35.4

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHH-cCCCeEEEEcCChhHHHHHh
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKA-AGASRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~-~G~~~vi~~~~~~~~~~~~~  236 (246)
                      ....+++|+|+|.+|...+..+.. .+..+|.+.+++++|.+.+.
T Consensus       123 ~~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la  167 (322)
T 1omo_A          123 KNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFV  167 (322)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHH
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHH
Confidence            466799999999999887776655 56779999999998876554

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=85.55  E-value=0.76  Score=37.28  Aligned_cols=36  Identities=28%  Similarity=0.372  Sum_probs=29.4

Q ss_pred             CCCEEEEECCC---HHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          194 PGSIVAVFGLG---TVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       194 ~~~~VlI~Gag---~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      .++++||+|++   ++|...++.+...|+ +|++++++.+
T Consensus        19 ~~k~vlITGas~~~giG~~~a~~l~~~G~-~v~~~~~~~~   57 (267)
T 3gdg_A           19 KGKVVVVTGASGPKGMGIEAARGCAEMGA-AVAITYASRA   57 (267)
T ss_dssp             TTCEEEETTCCSSSSHHHHHHHHHHHTSC-EEEECBSSSS
T ss_pred             CCCEEEEECCCCCCChHHHHHHHHHHCCC-eEEEEeCCcc
Confidence            35789999864   899998888888999 8888877754

>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*

Probab=85.46  E-value=1.2  Score=39.09  Aligned_cols=42  Identities=24%  Similarity=0.282  Sum_probs=31.7

Q ss_pred             hhCCC-CCCCEEEEECC-CHHHHHHHHHHHH-cCCCeEEEEcCChh
Q 025895          188 NTAKV-EPGSIVAVFGL-GTVGLAVAEGAKA-AGASRVIGIDIDPK  230 (246)
Q Consensus       188 ~~~~~-~~~~~VlI~Ga-g~~G~~ai~~a~~-~G~~~vi~~~~~~~  230 (246)
                      ....+ ..++++||+|+ +++|++.+..+.. .|+ +|++++++.+
T Consensus        39 ~~~~~~~~gKvaLVTGas~GIG~AiA~~LA~g~GA-~Vv~~~~~~~   83 (405)
T 3zu3_A           39 TEGPIANGPKRVLVIGASTGYGLAARITAAFGCGA-DTLGVFFERP   83 (405)
T ss_dssp             HHCCCTTCCSEEEEESCSSHHHHHHHHHHHHHHCC-EEEEEECCCC
T ss_pred             hcCCcCCCCCEEEEeCcchHHHHHHHHHHHHhcCC-EEEEEeCCch
Confidence            34444 56678899988 8999987777777 899 8888876543

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=85.38  E-value=0.99  Score=38.73  Aligned_cols=37  Identities=32%  Similarity=0.417  Sum_probs=33.2

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~  231 (246)
                      .|++|.|+|.|.+|...++.++..|+ +|++.++++++
T Consensus       170 ~gktiGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~  206 (340)
T 4dgs_A          170 KGKRIGVLGLGQIGRALASRAEAFGM-SVRYWNRSTLS  206 (340)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCCT
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCccc
Confidence            46899999999999999999999999 99999887654

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=85.36  E-value=1.1  Score=37.74  Aligned_cols=36  Identities=44%  Similarity=0.637  Sum_probs=32.4

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      .+.+|.|+|.|.+|...++.++..|+ +|++.+++.+
T Consensus       123 ~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~dr~~~  158 (303)
T 1qp8_A          123 QGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRTPK  158 (303)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCC-EEEEECCCcc
Confidence            56799999999999999999999999 8999987754

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=85.16  E-value=2.2  Score=33.50  Aligned_cols=50  Identities=20%  Similarity=0.331  Sum_probs=39.5

Q ss_pred             hhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhc
Q 025895          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSC  238 (246)
Q Consensus       186 l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~l  238 (246)
                      +......+++++||-+|.|. |..+..+++.. . +|++++.+++.++.+++.
T Consensus        62 ~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~-~-~v~~vD~~~~~~~~a~~~  111 (231)
T 1vbf_A           62 MLDELDLHKGQKVLEIGTGI-GYYTALIAEIV-D-KVVSVEINEKMYNYASKL  111 (231)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHS-S-EEEEEESCHHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEEcCCC-CHHHHHHHHHc-C-EEEEEeCCHHHHHHHHHH
Confidence            34556778889999999875 77777787764 5 999999999988877754

>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*

Probab=85.12  E-value=2.5  Score=36.03  Aligned_cols=55  Identities=13%  Similarity=0.125  Sum_probs=43.0

Q ss_pred             hCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHhhcCCCcc
Q 025895          189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRGMSCVSSSK  243 (246)
Q Consensus       189 ~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~--~~~~~~~~~~lg~~~~  243 (246)
                      ...++++++|+..++|..|.+.+..++.+|.+-++++..  ++.|++.++.+|+++.
T Consensus        72 ~g~~~~g~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~  128 (343)
T 2pqm_A           72 DGRLKPGMEIIESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELI  128 (343)
T ss_dssp             HTSSCTTCEEEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEE
T ss_pred             cCCCCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEE
Confidence            344567777777788999999999999999965665643  4678999999999853

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=85.08  E-value=1.1  Score=39.23  Aligned_cols=32  Identities=28%  Similarity=0.356  Sum_probs=29.7

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEc
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID  226 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~  226 (246)
                      ++.+|+|+|+|.+|...++.++.+|+ ++++++
T Consensus        23 ~~~~I~ilGgG~lg~~l~~aa~~lG~-~v~~~d   54 (403)
T 3k5i_A           23 NSRKVGVLGGGQLGRMLVESANRLNI-QVNVLD   54 (403)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEE
Confidence            46899999999999999999999999 888888

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=85.02  E-value=1.5  Score=39.88  Aligned_cols=47  Identities=19%  Similarity=0.164  Sum_probs=36.9

Q ss_pred             CCCEEEEECCCHHHHH-HHHHHHHcCCCeEEEEcCCh--hHHHHHhhcCCC
Q 025895          194 PGSIVAVFGLGTVGLA-VAEGAKAAGASRVIGIDIDP--KKFDRGMSCVSS  241 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~-ai~~a~~~G~~~vi~~~~~~--~~~~~~~~lg~~  241 (246)
                      ...+|.++|.|++|+. ++.+++..|+ +|.+.|..+  ...+.+++.|..
T Consensus        18 ~~~~i~~iGiGg~Gms~lA~~l~~~G~-~V~~sD~~~~~~~~~~L~~~gi~   67 (524)
T 3hn7_A           18 QGMHIHILGICGTFMGSLALLARALGH-TVTGSDANIYPPMSTQLEQAGVT   67 (524)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCCTTHHHHHHHTTCE
T ss_pred             cCCEEEEEEecHhhHHHHHHHHHhCCC-EEEEECCCCCcHHHHHHHHCCCE
Confidence            4578999999999997 5888999999 999999864  345667776665

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=84.85  E-value=0.9  Score=37.76  Aligned_cols=33  Identities=18%  Similarity=0.057  Sum_probs=29.0

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      ..+|+|+|+|+.|+.++..+...|. +|++++..
T Consensus        22 ~~~vvIIG~G~aGl~aA~~l~~~g~-~v~vie~~   54 (338)
T 3itj_A           22 HNKVTIIGSGPAAHTAAIYLARAEI-KPILYEGM   54 (338)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CCEEECCS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEecC
Confidence            3579999999999999999999999 89999874

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=84.77  E-value=1.1  Score=34.19  Aligned_cols=40  Identities=23%  Similarity=0.233  Sum_probs=33.4

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC---------CeEEEEcCChhH
Q 025895          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGA---------SRVIGIDIDPKK  231 (246)
Q Consensus       191 ~~~~~~~VlI~Gag~~G~~ai~~a~~~G~---------~~vi~~~~~~~~  231 (246)
                      .++++++||-+|+|. |..+..+++..|.         .+|+++|.++.+
T Consensus        19 ~~~~~~~vLDlGcG~-G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~   67 (196)
T 2nyu_A           19 ILRPGLRVLDCGAAP-GAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF   67 (196)
T ss_dssp             CCCTTCEEEEETCCS-CHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC
T ss_pred             CCCCCCEEEEeCCCC-CHHHHHHHHHhccccccccCCCceEEEEechhcc
Confidence            367889999999987 8889999999874         489999998753

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=84.59  E-value=0.88  Score=40.04  Aligned_cols=34  Identities=32%  Similarity=0.424  Sum_probs=29.6

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      ..|+|+|+|+.|+.++..+...|. +|++++..+.
T Consensus        28 ~dViIIGgG~AGl~aA~~La~~G~-~V~llEk~~~   61 (417)
T 3v76_A           28 QDVVIIGAGAAGMMCAIEAGKRGR-RVLVIDHARA   61 (417)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCC
Confidence            468899999999999888888999 8999988764

>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A*

Probab=84.58  E-value=1.7  Score=38.40  Aligned_cols=40  Identities=20%  Similarity=0.301  Sum_probs=29.4

Q ss_pred             hCCCCCCCEEEEECC-CHHHHH--HHHHHHHcCCCeEEEEcCCh
Q 025895          189 TAKVEPGSIVAVFGL-GTVGLA--VAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       189 ~~~~~~~~~VlI~Ga-g~~G~~--ai~~a~~~G~~~vi~~~~~~  229 (246)
                      ......++++||+|+ +++|++  .+......|+ +|++++++.
T Consensus        54 ~~~~~~gK~aLVTGassGIG~A~aia~ala~~Ga-~Vi~~~r~~   96 (418)
T 4eue_A           54 AIGFRGPKKVLIVGASSGFGLATRISVAFGGPEA-HTIGVSYET   96 (418)
T ss_dssp             SCCCCCCSEEEEESCSSHHHHHHHHHHHHSSSCC-EEEEEECCC
T ss_pred             cCcCCCCCEEEEECCCcHHHHHHHHHHHHHhCCC-EEEEEecCc
Confidence            344577899999998 899998  4444444599 898887754

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=84.52  E-value=1.2  Score=40.10  Aligned_cols=47  Identities=19%  Similarity=0.303  Sum_probs=37.4

Q ss_pred             CCCEEEEECCCHHHHH-HHHHHHHcCCCeEEEEcCChh-HHHHHhhcCCC
Q 025895          194 PGSIVAVFGLGTVGLA-VAEGAKAAGASRVIGIDIDPK-KFDRGMSCVSS  241 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~-ai~~a~~~G~~~vi~~~~~~~-~~~~~~~lg~~  241 (246)
                      ..++|+|+|.|.+|+. ++++++.+|+ +|.+.|..+. ..+.++++|..
T Consensus        21 ~~~~v~viGiG~sG~s~~A~~l~~~G~-~V~~~D~~~~~~~~~l~~~gi~   69 (494)
T 4hv4_A           21 RVRHIHFVGIGGAGMGGIAEVLANEGY-QISGSDLAPNSVTQHLTALGAQ   69 (494)
T ss_dssp             -CCEEEEETTTSTTHHHHHHHHHHTTC-EEEEECSSCCHHHHHHHHTTCE
T ss_pred             cCCEEEEEEEcHhhHHHHHHHHHhCCC-eEEEEECCCCHHHHHHHHCCCE
Confidence            3478999999999996 6999999999 9999997654 34566777765

>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*

Probab=84.50  E-value=2.5  Score=35.32  Aligned_cols=55  Identities=15%  Similarity=0.128  Sum_probs=42.2

Q ss_pred             hCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHhhcCCCcc
Q 025895          189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRGMSCVSSSK  243 (246)
Q Consensus       189 ~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~--~~~~~~~~~~lg~~~~  243 (246)
                      ...++++++|+..++|..|.+.+..++.+|..-++++..  ++.|++.++.+|+++.
T Consensus        55 ~g~~~~g~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~  111 (303)
T 2v03_A           55 RGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELI  111 (303)
T ss_dssp             TTCCCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEE
T ss_pred             cCCCCCCCEEEEECCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEE
Confidence            344566777777788999999999999999954555533  4678899999999853

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=84.40  E-value=0.95  Score=40.32  Aligned_cols=36  Identities=42%  Similarity=0.437  Sum_probs=30.9

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      ..+.+|+|+|+|+.|+.++..+...|+ +|++++..+
T Consensus       120 ~~~~~V~IIGgGpAGl~aA~~L~~~G~-~V~v~e~~~  155 (456)
T 2vdc_G          120 ELGLSVGVIGAGPAGLAAAEELRAKGY-EVHVYDRYD  155 (456)
T ss_dssp             SCCCCEEEECCSHHHHHHHHHHHHHTC-CEEEECSSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeccC
Confidence            346789999999999999998888999 899998764

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=84.22  E-value=0.95  Score=38.69  Aligned_cols=37  Identities=38%  Similarity=0.510  Sum_probs=32.9

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~  231 (246)
                      .+.+|.|+|.|.+|...++.++..|+ +|++.+++.++
T Consensus       163 ~g~~vgIIG~G~iG~~vA~~l~~~G~-~V~~~dr~~~~  199 (333)
T 3ba1_A          163 SGKRVGIIGLGRIGLAVAERAEAFDC-PISYFSRSKKP  199 (333)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTC-CEEEECSSCCT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCchh
Confidence            46789999999999999999999999 89999887654

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=84.16  E-value=2  Score=35.67  Aligned_cols=40  Identities=13%  Similarity=0.019  Sum_probs=33.7

Q ss_pred             CCCCEEEEECCC-HHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 025895          193 EPGSIVAVFGLG-TVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (246)
Q Consensus       193 ~~~~~VlI~Gag-~~G~~ai~~a~~~G~~~vi~~~~~~~~~~  233 (246)
                      -.|++++|+|.| .+|..++.++...|+ +|+++.+..+.++
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~gA-tVtv~~~~t~~L~  188 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRNY-TVSVCHSKTKDIG  188 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTCSCHH
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCCC-eEEEEeCCcccHH
Confidence            678999999985 699999999999999 8998877555444

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=84.14  E-value=1.3  Score=36.49  Aligned_cols=32  Identities=19%  Similarity=0.107  Sum_probs=28.3

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      ..|+|+|+|+.|+.++..+...|. +|++++.+
T Consensus        16 ~~vvIIG~G~aGl~aA~~l~~~g~-~v~lie~~   47 (323)
T 3f8d_A           16 FDVIIVGLGPAAYGAALYSARYML-KTLVIGET   47 (323)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             cCEEEECccHHHHHHHHHHHHCCC-cEEEEecc
Confidence            479999999999999988888999 79988874

>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A*

Probab=84.13  E-value=1.1  Score=37.55  Aligned_cols=35  Identities=34%  Similarity=0.354  Sum_probs=29.2

Q ss_pred             CCCEEEEECC---CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          194 PGSIVAVFGL---GTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       194 ~~~~VlI~Ga---g~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      .++++||+|+   +++|...++.+...|+ +|+++++++
T Consensus         8 ~gk~~lVTGa~~s~GIG~aia~~la~~G~-~Vv~~~r~~   45 (315)
T 2o2s_A            8 RGQTAFVAGVADSHGYGWAIAKHLASAGA-RVALGTWPP   45 (315)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHHHTTTC-EEEEEECHH
T ss_pred             CCCEEEEeCCCCCCChHHHHHHHHHHCCC-EEEEEeccc
Confidence            3678999985   7999998888888899 899987653

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=84.11  E-value=1.4  Score=38.35  Aligned_cols=35  Identities=23%  Similarity=0.387  Sum_probs=30.8

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      ....+|+|+|+|..|+.++..++..|. +|++++.+
T Consensus        42 ~~~~~V~IIGAGiaGL~aA~~L~~~G~-~V~VlE~~   76 (376)
T 2e1m_A           42 GPPKRILIVGAGIAGLVAGDLLTRAGH-DVTILEAN   76 (376)
T ss_dssp             CSCCEEEEECCBHHHHHHHHHHHHTSC-EEEEECSC
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHCCC-cEEEEecc
Confidence            345689999999999999999999998 99999877

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=84.08  E-value=1.1  Score=36.98  Aligned_cols=33  Identities=27%  Similarity=0.317  Sum_probs=27.8

Q ss_pred             CEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCh
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDP  229 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~-G~~~vi~~~~~~  229 (246)
                      -.|+|+|+|+.|+.++..+... |. +|++++..+
T Consensus        40 ~dVvIIGgG~aGl~aA~~la~~~G~-~V~viEk~~   73 (284)
T 1rp0_A           40 TDVVVVGAGSAGLSAAYEISKNPNV-QVAIIEQSV   73 (284)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTS-CEEEEESSS
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCC-eEEEEECCC
Confidence            3689999999999988888776 98 888887764

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=84.03  E-value=1.1  Score=39.79  Aligned_cols=36  Identities=25%  Similarity=0.324  Sum_probs=30.8

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      ....+|+|+|+|..|+.++..+...|. +|++++.++
T Consensus        31 ~~~~~v~IiGaG~~Gl~aA~~l~~~g~-~v~vlE~~~   66 (498)
T 2iid_A           31 SNPKHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEASE   66 (498)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCC-eEEEEECCC
Confidence            345689999999999999999999998 899997764

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=84.03  E-value=2.1  Score=35.61  Aligned_cols=48  Identities=21%  Similarity=0.335  Sum_probs=38.0

Q ss_pred             hhCC-CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          188 NTAK-VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       188 ~~~~-~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      .... ++++++||=+|.|. |..+..+++..|+ +|+++|.+++.++.+++
T Consensus       110 ~~l~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~  158 (312)
T 3vc1_A          110 DHLGQAGPDDTLVDAGCGR-GGSMVMAHRRFGS-RVEGVTLSAAQADFGNR  158 (312)
T ss_dssp             TTSCCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHH
T ss_pred             HHhccCCCCCEEEEecCCC-CHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH
Confidence            4444 78899999998753 6777778887787 99999999998877665

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=84.03  E-value=1.8  Score=38.37  Aligned_cols=45  Identities=31%  Similarity=0.510  Sum_probs=37.2

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhc
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSC  238 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~l  238 (246)
                      ..|.++-|+|.|-+|+..+..+...|+ +|++++++++|.+.+.+-
T Consensus         9 ~~~~~~~ViGlGyvGlp~A~~La~~G~-~V~~~D~~~~kv~~L~~g   53 (431)
T 3ojo_A            9 HHGSKLTVVGLGYIGLPTSIMFAKHGV-DVLGVDINQQTIDKLQNG   53 (431)
T ss_dssp             ---CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTT
T ss_pred             ccCCccEEEeeCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHCC
Confidence            456788899999999987777777899 999999999999988763

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=83.94  E-value=1.7  Score=36.58  Aligned_cols=44  Identities=20%  Similarity=0.276  Sum_probs=35.8

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCh-------hHHHHHhhcCC
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDP-------KKFDRGMSCVS  240 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~G-~~~vi~~~~~~-------~~~~~~~~lg~  240 (246)
                      .+|.|+|.|.+|...+..+...| . +|++.++++       ++.+.+.+.|.
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~-~V~~~dr~~~~~~~~~~~~~~~~~~g~   76 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAA-RLAAYDLRFNDPAASGALRARAAELGV   76 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCS-EEEEECGGGGCTTTHHHHHHHHHHTTC
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCC-eEEEEeCCCccccchHHHHHHHHHCCC
Confidence            57999999999999988888889 7 999999987       45555555553

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=83.91  E-value=1.5  Score=37.05  Aligned_cols=45  Identities=22%  Similarity=0.296  Sum_probs=36.0

Q ss_pred             EEEEECCCHHHHHHHHHHHHcCC---CeEEEEcCChh--HHHHHhhcCCC
Q 025895          197 IVAVFGLGTVGLAVAEGAKAAGA---SRVIGIDIDPK--KFDRGMSCVSS  241 (246)
Q Consensus       197 ~VlI~Gag~~G~~ai~~a~~~G~---~~vi~~~~~~~--~~~~~~~lg~~  241 (246)
                      +|.|+|+|.+|...+..+...|.   .+|++++++++  +.+.+++.|..
T Consensus        24 kI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~   73 (322)
T 2izz_A           24 SVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVK   73 (322)
T ss_dssp             CEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCE
Confidence            58999999999988888878882   38999999886  77777766654

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=83.89  E-value=1.6  Score=32.99  Aligned_cols=46  Identities=20%  Similarity=0.229  Sum_probs=35.7

Q ss_pred             hCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       189 ~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      ...++++++||=+|.|. |..+..+++. +. +|+++|.+++.++.+++
T Consensus        17 ~~~~~~~~~vLDiGcG~-G~~~~~la~~-~~-~v~~vD~s~~~l~~a~~   62 (185)
T 3mti_A           17 AEVLDDESIVVDATMGN-GNDTAFLAGL-SK-KVYAFDVQEQALGKTSQ   62 (185)
T ss_dssp             HTTCCTTCEEEESCCTT-SHHHHHHHTT-SS-EEEEEESCHHHHHHHHH
T ss_pred             HHhCCCCCEEEEEcCCC-CHHHHHHHHh-CC-EEEEEECCHHHHHHHHH
Confidence            34567889988878753 6777778877 66 99999999988877654

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=83.89  E-value=0.79  Score=38.51  Aligned_cols=35  Identities=26%  Similarity=0.399  Sum_probs=29.1

Q ss_pred             CCEEEEECC-CHHHHHHHHHHHHcC-------CCeEEEEcCChh
Q 025895          195 GSIVAVFGL-GTVGLAVAEGAKAAG-------ASRVIGIDIDPK  230 (246)
Q Consensus       195 ~~~VlI~Ga-g~~G~~ai~~a~~~G-------~~~vi~~~~~~~  230 (246)
                      +.+|||+|+ |.+|...+..+...|       . +|++++++++
T Consensus        14 ~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~-~V~~~~r~~~   56 (342)
T 2hrz_A           14 GMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVE-KFTLIDVFQP   56 (342)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHCEETTEEEE-EEEEEESSCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhcCCcccCCCc-eEEEEEccCC
Confidence            458999998 999999888888888       6 8888887653

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=83.85  E-value=1.7  Score=39.60  Aligned_cols=45  Identities=33%  Similarity=0.352  Sum_probs=37.0

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCC
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVS  240 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~  240 (246)
                      .+.+|.|+|.|.+|...++.++..|+ +|++++++..+ +.+.++|+
T Consensus       141 ~g~~vgIIG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~-~~a~~~g~  185 (529)
T 1ygy_A          141 FGKTVGVVGLGRIGQLVAQRIAAFGA-YVVAYDPYVSP-ARAAQLGI  185 (529)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSCH-HHHHHHTC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEECCCCCh-hHHHhcCc
Confidence            46899999999999999999999999 99999887643 44555554

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=83.83  E-value=2.1  Score=35.83  Aligned_cols=40  Identities=20%  Similarity=0.129  Sum_probs=33.7

Q ss_pred             CCCCEEEEECCC-HHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 025895          193 EPGSIVAVFGLG-TVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (246)
Q Consensus       193 ~~~~~VlI~Gag-~~G~~ai~~a~~~G~~~vi~~~~~~~~~~  233 (246)
                      -.|++++|+|.| .+|.-+++++...|+ +|.++.+..+.++
T Consensus       157 l~gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs~t~~L~  197 (288)
T 1b0a_A          157 TFGLNAVVIGASNIVGRPMSMELLLAGC-TTTVTHRFTKNLR  197 (288)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHTTTC-EEEEECSSCSCHH
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHHCCC-eEEEEeCCchhHH
Confidence            477999999997 589999999999999 8998877765554

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=83.72  E-value=1.2  Score=37.65  Aligned_cols=33  Identities=18%  Similarity=0.169  Sum_probs=28.8

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      ..|+|+|+|+.|+.++..+...|+ +|++++..+
T Consensus        15 ~dvvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~   47 (360)
T 3ab1_A           15 RDLTIIGGGPTGIFAAFQCGMNNI-SCRIIESMP   47 (360)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence            479999999999999888888899 899998764

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=83.66  E-value=1.7  Score=37.27  Aligned_cols=41  Identities=22%  Similarity=0.280  Sum_probs=33.5

Q ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcC
Q 025895          197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCV  239 (246)
Q Consensus       197 ~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg  239 (246)
                      +|+|+|+|.+|..++..+.. .. .|.+.+++.++++.+++..
T Consensus        18 kilvlGaG~vG~~~~~~L~~-~~-~v~~~~~~~~~~~~~~~~~   58 (365)
T 3abi_A           18 KVLILGAGNIGRAIAWDLKD-EF-DVYIGDVNNENLEKVKEFA   58 (365)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TS-EEEEEESCHHHHHHHTTTS
T ss_pred             EEEEECCCHHHHHHHHHHhc-CC-CeEEEEcCHHHHHHHhccC
Confidence            69999999999988877753 45 8889999999988876543

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=83.61  E-value=1.6  Score=33.45  Aligned_cols=47  Identities=30%  Similarity=0.304  Sum_probs=36.5

Q ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCChhHHHHHhh
Q 025895          190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       190 ~~~~~~~~VlI~Gag~~G~~ai~~a~~~G-~~~vi~~~~~~~~~~~~~~  237 (246)
                      ..++++++||-+|.|. |..+..+++..+ ..+++++|.+++.++.+++
T Consensus        18 ~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~   65 (197)
T 3eey_A           18 MFVKEGDTVVDATCGN-GNDTAFLASLVGENGRVFGFDIQDKAIANTTK   65 (197)
T ss_dssp             HHCCTTCEEEESCCTT-SHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH
T ss_pred             hcCCCCCEEEEcCCCC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence            4567889999888765 677778888764 2399999999988877655

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=83.57  E-value=1.1  Score=41.15  Aligned_cols=33  Identities=30%  Similarity=0.373  Sum_probs=28.5

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      -.|+|+|+|+.|++++..+...|. +|+++++.+
T Consensus        50 ~DVvIVGaG~aGL~~A~~La~~G~-~V~VlEr~~   82 (570)
T 3fmw_A           50 TDVVVVGGGPVGLMLAGELRAGGV-GALVLEKLV   82 (570)
T ss_dssp             -CEEEECCSHHHHHHHHHHHHTTC-CEEEEBSCS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC-CEEEEcCCC
Confidence            358999999999999888888999 899998764

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=83.54  E-value=2.1  Score=38.14  Aligned_cols=41  Identities=37%  Similarity=0.617  Sum_probs=34.4

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      .+|-|+|.|-+|+-.+......|. +|+++|.+++|.+.+++
T Consensus        22 ~~IaViGlGYVGLp~A~~~A~~G~-~V~g~Did~~kV~~ln~   62 (444)
T 3vtf_A           22 ASLSVLGLGYVGVVHAVGFALLGH-RVVGYDVNPSIVERLRA   62 (444)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHHHHHHHHT
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHC
Confidence            579999999999876666666788 99999999999887754

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=83.44  E-value=0.91  Score=40.12  Aligned_cols=39  Identities=31%  Similarity=0.391  Sum_probs=29.4

Q ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       190 ~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      +......+|+|+|+|..|+.++..+...|. +|.+++.++
T Consensus        11 ~~~~~~~~v~iiG~G~~Gl~aa~~l~~~g~-~v~v~E~~~   49 (478)
T 2ivd_A           11 MPRTTGMNVAVVGGGISGLAVAHHLRSRGT-DAVLLESSA   49 (478)
T ss_dssp             ------CCEEEECCBHHHHHHHHHHHTTTC-CEEEECSSS
T ss_pred             CCCCCCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEEcCC
Confidence            445556679999999999999999998999 899987765

>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*

Probab=83.26  E-value=2.6  Score=35.37  Aligned_cols=54  Identities=15%  Similarity=0.046  Sum_probs=41.1

Q ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHhhcCCCcc
Q 025895          190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRGMSCVSSSK  243 (246)
Q Consensus       190 ~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~--~~~~~~~~~~lg~~~~  243 (246)
                      ..++++++|+..++|..|++.+..++.+|.+-++.+..  ++.|++.++.+|+++.
T Consensus        57 g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~  112 (316)
T 1y7l_A           57 GTLTKGKEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLV  112 (316)
T ss_dssp             TSSCTTCEEEESCCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEE
T ss_pred             CCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEE
Confidence            34456666665567999999999999999965665643  5678999999999853

>3nx6_A 10KDA chaperonin; bacterial blight, XOO4289, groes, xanthomonas oryzae PV. ORY KACC10331, chaperone; 1.97A {Xanthomonas oryzae PV} SCOP: b.35.1.0

Probab=83.25  E-value=2.1  Score=29.60  Aligned_cols=25  Identities=36%  Similarity=0.469  Sum_probs=19.8

Q ss_pred             eEEEEEEcCCCCC---------ccCCCCEEEeeC
Q 025895           71 AAGIVESVGEGVT---------EVQPGDHVIPCY   95 (246)
Q Consensus        71 ~vG~V~~vG~~~~---------~~~~Gd~V~~~~   95 (246)
                      ..|+|+++|++..         .+++||+|+...
T Consensus        36 ~~G~VvAVG~G~~~~~G~~~p~~VkvGD~Vl~~k   69 (95)
T 3nx6_A           36 TKGEVVAIGAGKPLDNGSLHAPVVKVGDKVIYGQ   69 (95)
T ss_dssp             EEEEEEEECSCEECTTSCEECCSCCTTCEEEECT
T ss_pred             cccEEEEECCCeECCCCCEEccccCCCCEEEECC
Confidence            3699999999753         489999998553

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=83.20  E-value=3.2  Score=31.97  Aligned_cols=47  Identities=15%  Similarity=0.015  Sum_probs=37.6

Q ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcC
Q 025895          190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCV  239 (246)
Q Consensus       190 ~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg  239 (246)
                      ....++.+||-+|.|. |..+..+++. |. +++++|.+++.++.+++.+
T Consensus        42 ~~~~~~~~vLdiG~G~-G~~~~~l~~~-~~-~v~~~D~s~~~~~~a~~~~   88 (218)
T 3ou2_A           42 RAGNIRGDVLELASGT-GYWTRHLSGL-AD-RVTALDGSAEMIAEAGRHG   88 (218)
T ss_dssp             TTTTSCSEEEEESCTT-SHHHHHHHHH-SS-EEEEEESCHHHHHHHGGGC
T ss_pred             hcCCCCCeEEEECCCC-CHHHHHHHhc-CC-eEEEEeCCHHHHHHHHhcC
Confidence            3467788999998764 6666677776 77 9999999999999988865

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=82.93  E-value=2.7  Score=35.11  Aligned_cols=40  Identities=20%  Similarity=0.112  Sum_probs=32.9

Q ss_pred             CCCCEEEEECCC-HHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 025895          193 EPGSIVAVFGLG-TVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (246)
Q Consensus       193 ~~~~~VlI~Gag-~~G~~ai~~a~~~G~~~vi~~~~~~~~~~  233 (246)
                      -.|++++|+|.| .+|..++.++...|+ +|.++.+....++
T Consensus       159 l~Gk~vvVvGrs~iVG~plA~lL~~~gA-tVtv~hs~T~~L~  199 (286)
T 4a5o_A          159 LYGMDAVVVGASNIVGRPMALELLLGGC-TVTVTHRFTRDLA  199 (286)
T ss_dssp             CTTCEEEEECTTSTTHHHHHHHHHHTTC-EEEEECTTCSCHH
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCCcCHH
Confidence            478999999985 699999999999999 8888876544443

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=82.67  E-value=1.1  Score=35.68  Aligned_cols=46  Identities=13%  Similarity=0.089  Sum_probs=36.7

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCChhHHHHHhh
Q 025895          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       191 ~~~~~~~VlI~Gag~~G~~ai~~a~~~G-~~~vi~~~~~~~~~~~~~~  237 (246)
                      ...++++||-+|.| .|..+..+++..+ ..+|++++.+++..+.+++
T Consensus        57 ~~~~~~~VLdiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~  103 (239)
T 2hnk_A           57 KISGAKRIIEIGTF-TGYSSLCFASALPEDGKILCCDVSEEWTNVARK  103 (239)
T ss_dssp             HHHTCSEEEEECCT-TCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHH
T ss_pred             HhhCcCEEEEEeCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH
Confidence            34567899999987 5888889999874 3399999999998877665

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=82.51  E-value=1.6  Score=37.32  Aligned_cols=36  Identities=28%  Similarity=0.355  Sum_probs=32.4

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      .+.+|.|+|.|.+|...++.++..|+ +|++.++...
T Consensus       140 ~g~tvGIiG~G~IG~~va~~~~~fg~-~v~~~d~~~~  175 (334)
T 3kb6_A          140 NRLTLGVIGTGRIGSRVAMYGLAFGM-KVLCYDVVKR  175 (334)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             cCcEEEEECcchHHHHHHHhhcccCc-eeeecCCccc
Confidence            46799999999999999999999999 9999987653

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=82.49  E-value=1.5  Score=36.26  Aligned_cols=32  Identities=28%  Similarity=0.303  Sum_probs=28.0

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      ..|+|+|+|+.|+.++..+...|. +|++++..
T Consensus        17 ~dvvIIG~G~aGl~aA~~l~~~g~-~v~lie~~   48 (319)
T 3cty_A           17 FDVVIVGAGAAGFSAAVYAARSGF-SVAILDKA   48 (319)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCC-cEEEEeCC
Confidence            469999999999999988888999 88888764

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=82.43  E-value=3.1  Score=33.15  Aligned_cols=46  Identities=22%  Similarity=0.205  Sum_probs=38.0

Q ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       190 ~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      ..++++.+||-+|.|. |..+..+++..+. +|+++|.+++.++.+++
T Consensus        42 ~~~~~~~~vLDiG~G~-G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~   87 (257)
T 3f4k_A           42 NELTDDAKIADIGCGT-GGQTLFLADYVKG-QITGIDLFPDFIEIFNE   87 (257)
T ss_dssp             CCCCTTCEEEEETCTT-SHHHHHHHHHCCS-EEEEEESCHHHHHHHHH
T ss_pred             hcCCCCCeEEEeCCCC-CHHHHHHHHhCCC-eEEEEECCHHHHHHHHH
Confidence            3677888999998864 7888889998887 99999999988877654

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=82.39  E-value=2.1  Score=36.36  Aligned_cols=35  Identities=26%  Similarity=0.297  Sum_probs=30.4

Q ss_pred             CCCCEEEEECCC-HHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          193 EPGSIVAVFGLG-TVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       193 ~~~~~VlI~Gag-~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      -.+.+++|+|+| .+|..+++++...|+ +|++++++
T Consensus       175 l~gk~vvVIG~G~iVG~~~A~~L~~~gA-tVtv~nR~  210 (320)
T 1edz_A          175 LYGKKCIVINRSEIVGRPLAALLANDGA-TVYSVDVN  210 (320)
T ss_dssp             TTTCEEEEECCCTTTHHHHHHHHHTTSC-EEEEECSS
T ss_pred             CCCCEEEEECCCcchHHHHHHHHHHCCC-EEEEEeCc
Confidence            367899999998 579999999999998 89888765

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=82.22  E-value=1.4  Score=38.90  Aligned_cols=32  Identities=41%  Similarity=0.471  Sum_probs=28.1

Q ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       197 ~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      .|+|+|+|..|+.++..+...|. +|++++..+
T Consensus        28 dVvIIGgG~aGl~aA~~la~~G~-~V~llEk~~   59 (447)
T 2i0z_A           28 DVIVIGGGPSGLMAAIGAAEEGA-NVLLLDKGN   59 (447)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHHCCC-CEEEEECCC
Confidence            58889999999998888888898 899998765

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=82.15  E-value=2.5  Score=37.52  Aligned_cols=49  Identities=18%  Similarity=0.182  Sum_probs=37.7

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh--------HHHHHhhcCCC
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK--------KFDRGMSCVSS  241 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~--------~~~~~~~lg~~  241 (246)
                      ..+++|+|+|+|.+|.-++..+...|+++|..+.+.+.        ..+.+++.|..
T Consensus       262 ~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~~~p~~~~e~~~~~~~Gv~  318 (456)
T 2vdc_G          262 AAGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRKNMPGSQREVAHAEEEGVE  318 (456)
T ss_dssp             CCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCSTTCSSCHHHHHHHHHTTCE
T ss_pred             cCCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCccCCCCCHHHHHHHHHCCCE
Confidence            56889999999999999999888999866888866542        24456666654

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=82.14  E-value=1.7  Score=38.66  Aligned_cols=34  Identities=38%  Similarity=0.311  Sum_probs=30.3

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI  227 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~  227 (246)
                      -.|.+|+|.|.|.+|..+++.+...|+ +|++++.
T Consensus       233 l~Gk~vaVQG~GnVG~~aa~~L~e~Ga-kvVavsD  266 (450)
T 4fcc_A          233 FEGMRVSVSGSGNVAQYAIEKAMEFGA-RVITASD  266 (450)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEEE
T ss_pred             cCCCEEEEeCCChHHHHHHHHHHhcCC-eEEEEec
Confidence            358899999999999999999999999 8887763

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=82.00  E-value=1.9  Score=38.05  Aligned_cols=35  Identities=26%  Similarity=0.397  Sum_probs=32.0

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.++++
T Consensus       155 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~yd~~~  189 (416)
T 3k5p_A          155 RGKTLGIVGYGNIGSQVGNLAESLGM-TVRYYDTSD  189 (416)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECTTC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCcc
Confidence            46899999999999999999999999 999998764

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=81.99  E-value=1.3  Score=36.79  Aligned_cols=35  Identities=20%  Similarity=0.254  Sum_probs=30.7

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      .+.+|||+|+|.+|...+..+...|+ +|++++...
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~Ga-~VtViap~~   46 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSPDL   46 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCC-EEEEEcCCC
Confidence            46899999999999999999999999 888887554

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=81.94  E-value=1.9  Score=37.08  Aligned_cols=34  Identities=29%  Similarity=0.419  Sum_probs=30.9

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      ..+|+|+|+|++|..++..+-..|..++..+|..
T Consensus       118 ~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D  151 (353)
T 3h5n_A          118 NAKVVILGCGGIGNHVSVILATSGIGEIILIDND  151 (353)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCC
Confidence            4789999999999999999999999999999875

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=81.65  E-value=3.2  Score=31.43  Aligned_cols=48  Identities=19%  Similarity=0.053  Sum_probs=35.3

Q ss_pred             hhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       187 ~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      .......++.+||-+|.| .|..+..+++. |. ++++++.+++.++.+++
T Consensus        25 ~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~   72 (199)
T 2xvm_A           25 LEAVKVVKPGKTLDLGCG-NGRNSLYLAAN-GY-DVDAWDKNAMSIANVER   72 (199)
T ss_dssp             HHHTTTSCSCEEEEETCT-TSHHHHHHHHT-TC-EEEEEESCHHHHHHHHH
T ss_pred             HHHhhccCCCeEEEEcCC-CCHHHHHHHHC-CC-eEEEEECCHHHHHHHHH
Confidence            344455677899988875 35666677766 77 99999999988777654

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=81.64  E-value=1.2  Score=38.86  Aligned_cols=37  Identities=32%  Similarity=0.394  Sum_probs=26.4

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       191 ~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      ...++++||-+|+|. |++++.+| ..|+++|++++.++
T Consensus        80 ~~~~~k~VLDvG~Gt-GiLs~~Aa-~aGA~~V~ave~s~  116 (376)
T 4hc4_A           80 AALRGKTVLDVGAGT-GILSIFCA-QAGARRVYAVEASA  116 (376)
T ss_dssp             HHHTTCEEEEETCTT-SHHHHHHH-HTTCSEEEEEECST
T ss_pred             HhcCCCEEEEeCCCc-cHHHHHHH-HhCCCEEEEEeChH
Confidence            345788999888753 55554444 46888999999885

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=81.64  E-value=2.1  Score=38.59  Aligned_cols=43  Identities=19%  Similarity=0.225  Sum_probs=37.5

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      ...+|.|+|.|.+|...+..+...|+ +|++.++++++.+.+.+
T Consensus         9 ~~~~IgvIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~   51 (497)
T 2p4q_A            9 MSADFGLIGLAVMGQNLILNAADHGF-TVCAYNRTQSKVDHFLA   51 (497)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSHHHHHHHH
T ss_pred             CCCCEEEEeeHHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHc
Confidence            34679999999999998888888899 89999999999887765

>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*

Probab=81.59  E-value=2.2  Score=36.23  Aligned_cols=56  Identities=16%  Similarity=0.120  Sum_probs=42.2

Q ss_pred             hhCCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHhhcCCCcc
Q 025895          188 NTAKVEPGSIVAVF-GLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRGMSCVSSSK  243 (246)
Q Consensus       188 ~~~~~~~~~~VlI~-Gag~~G~~ai~~a~~~G~~~vi~~~~--~~~~~~~~~~lg~~~~  243 (246)
                      ....+++|++|+|. ++|..|++.+..++.+|+.-++++..  +..|++.++.+|+++.
T Consensus        64 ~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~  122 (334)
T 3tbh_A           64 KEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVI  122 (334)
T ss_dssp             HTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEE
T ss_pred             HcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEE
Confidence            34456788887554 66999999999999999955555543  4578889999999853

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=81.52  E-value=1.6  Score=38.76  Aligned_cols=33  Identities=27%  Similarity=0.411  Sum_probs=30.3

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC--CeEEEEc
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGA--SRVIGID  226 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~--~~vi~~~  226 (246)
                      .+.+++|+|+|..|.+++..+...|+  ++|++++
T Consensus       185 ~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd  219 (439)
T 2dvm_A          185 SEITLALFGAGAAGFATLRILTEAGVKPENVRVVE  219 (439)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred             cCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEE
Confidence            56789999999999999999999998  7899998

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=81.47  E-value=1.4  Score=38.14  Aligned_cols=33  Identities=21%  Similarity=0.248  Sum_probs=27.5

Q ss_pred             CEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCh
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAA--GASRVIGIDIDP  229 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~--G~~~vi~~~~~~  229 (246)
                      -.|+|+|+|.+|++++..+...  |. +|++++..+
T Consensus        37 ~dVvIIGaGi~Gls~A~~La~~~pG~-~V~vlE~~~   71 (405)
T 3c4n_A           37 FDIVVIGAGRMGAACAFYLRQLAPGR-SLLLVEEGG   71 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTS-CEEEECSSC
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCC-eEEEEeCCC
Confidence            3689999999999987777777  98 899998653

>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A

Probab=81.46  E-value=3.8  Score=34.27  Aligned_cols=55  Identities=16%  Similarity=0.108  Sum_probs=40.7

Q ss_pred             hCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHhhcCCCcc
Q 025895          189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRGMSCVSSSK  243 (246)
Q Consensus       189 ~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~--~~~~~~~~~~lg~~~~  243 (246)
                      ...++++++|+....|..|++.+..++.+|++-++.+..  ++.|++.++.+|+++.
T Consensus        61 ~g~~~~g~~vv~assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~  117 (313)
T 2q3b_A           61 AGLIKPDTIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELI  117 (313)
T ss_dssp             TTCCCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEE
T ss_pred             cCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEE
Confidence            334566667666455999999999999999954555533  4678899999999853

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=81.38  E-value=4.7  Score=35.98  Aligned_cols=36  Identities=28%  Similarity=0.271  Sum_probs=32.0

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 025895          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (246)
Q Consensus       195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~  231 (246)
                      -.+|.|+|+|.+|...++.+...|+ +|++.++++++
T Consensus        54 i~kVaVIGaG~MG~~IA~~la~aG~-~V~l~D~~~e~   89 (460)
T 3k6j_A           54 VNSVAIIGGGTMGKAMAICFGLAGI-ETFLVVRNEQR   89 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECcHHH
Confidence            3689999999999998888888899 99999999884

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=81.35  E-value=1.6  Score=40.75  Aligned_cols=34  Identities=24%  Similarity=0.167  Sum_probs=29.8

Q ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       195 ~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      +.+|||+|+ |.+|...++.+...|+ +|++++++.
T Consensus        11 ~~~ilVTGatG~IG~~l~~~L~~~G~-~V~~~~r~~   45 (699)
T 1z45_A           11 SKIVLVTGGAGYIGSHTVVELIENGY-DCVVADNLS   45 (699)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEECCC
Confidence            578999998 9999999998888998 899998754

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=81.30  E-value=2.1  Score=38.93  Aligned_cols=34  Identities=18%  Similarity=0.127  Sum_probs=27.9

Q ss_pred             CCEEEEECCCHHHHHHHHHHHH---cCCCeEEEEcCCh
Q 025895          195 GSIVAVFGLGTVGLAVAEGAKA---AGASRVIGIDIDP  229 (246)
Q Consensus       195 ~~~VlI~Gag~~G~~ai~~a~~---~G~~~vi~~~~~~  229 (246)
                      ...|+|+|+|..|++++..+..   .|. +|+++++.+
T Consensus        25 ~~dVvIVGgG~aGl~aA~~La~~~~~G~-~V~liE~~~   61 (550)
T 2e4g_A           25 IDKILIVGGGTAGWMAASYLGKALQGTA-DITLLQAPD   61 (550)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTTTSS-EEEEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCC-cEEEEeCCC
Confidence            3579999999999887777776   788 899998753

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=81.30  E-value=2.7  Score=34.33  Aligned_cols=49  Identities=16%  Similarity=0.211  Sum_probs=37.0

Q ss_pred             hhhCCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCChhHHHHHhh
Q 025895          187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAA--GASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       187 ~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~--G~~~vi~~~~~~~~~~~~~~  237 (246)
                      .....++++++||-+|+| .|..+..+++..  +. +|+++|.+++.++.+++
T Consensus       103 ~~~~~~~~~~~VLD~G~G-~G~~~~~la~~~~~~~-~v~~vD~s~~~~~~a~~  153 (275)
T 1yb2_A          103 IMRCGLRPGMDILEVGVG-SGNMSSYILYALNGKG-TLTVVERDEDNLKKAMD  153 (275)
T ss_dssp             ---CCCCTTCEEEEECCT-TSHHHHHHHHHHTTSS-EEEEECSCHHHHHHHHH
T ss_pred             HHHcCCCCcCEEEEecCC-CCHHHHHHHHHcCCCC-EEEEEECCHHHHHHHHH
Confidence            455678899999999876 466777788773  45 99999999998887765

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=81.24  E-value=2.5  Score=33.17  Aligned_cols=47  Identities=15%  Similarity=0.262  Sum_probs=37.4

Q ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       190 ~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      ..++++++||=+|.|..|..++.+++..+. +|+++|.+++.++.+++
T Consensus        51 ~~~~~~~~vLDlG~G~~G~~~~~la~~~~~-~v~~vD~s~~~~~~a~~   97 (230)
T 3evz_A           51 TFLRGGEVALEIGTGHTAMMALMAEKFFNC-KVTATEVDEEFFEYARR   97 (230)
T ss_dssp             TTCCSSCEEEEECCTTTCHHHHHHHHHHCC-EEEEEECCHHHHHHHHH
T ss_pred             hhcCCCCEEEEcCCCHHHHHHHHHHHhcCC-EEEEEECCHHHHHHHHH
Confidence            345788999988888667777788877666 99999999998877654

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=81.13  E-value=2  Score=40.31  Aligned_cols=35  Identities=26%  Similarity=0.322  Sum_probs=30.6

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      ...+|+|+|+|+.|+.++..+...|. +|++++.++
T Consensus       390 ~~~~VvIIGgG~AGl~aA~~La~~G~-~V~liE~~~  424 (690)
T 3k30_A          390 SDARVLVVGAGPSGLEAARALGVRGY-DVVLAEAGR  424 (690)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence            34689999999999999988888899 899998864

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=81.06  E-value=1.6  Score=37.37  Aligned_cols=33  Identities=24%  Similarity=0.128  Sum_probs=27.3

Q ss_pred             CEEEEECCCHHHHHHHHHHHH-cC-CCeEEEEcCCh
Q 025895          196 SIVAVFGLGTVGLAVAEGAKA-AG-ASRVIGIDIDP  229 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~-~G-~~~vi~~~~~~  229 (246)
                      -.|+|+|+|..|+.++..+.. .| . +|++++..+
T Consensus        22 ~dVvIIG~G~~Gl~~A~~La~~~G~~-~V~vlE~~~   56 (405)
T 2gag_B           22 YDAIIVGGGGHGLATAYFLAKNHGIT-NVAVLEKGW   56 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCCC-CEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHhcCCC-cEEEEeCCC
Confidence            468999999999987777777 89 7 899998754

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=81.04  E-value=1.9  Score=33.51  Aligned_cols=47  Identities=21%  Similarity=0.272  Sum_probs=35.5

Q ss_pred             hhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       188 ~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      ....+.++.+||-+|.| .|..+..+++. |+ +|+++|.+++-++.+++
T Consensus        16 ~~l~~~~~~~vLD~GCG-~G~~~~~la~~-g~-~V~gvD~S~~~l~~a~~   62 (203)
T 1pjz_A           16 SSLNVVPGARVLVPLCG-KSQDMSWLSGQ-GY-HVVGAELSEAAVERYFT   62 (203)
T ss_dssp             HHHCCCTTCEEEETTTC-CSHHHHHHHHH-CC-EEEEEEECHHHHHHHHH
T ss_pred             HhcccCCCCEEEEeCCC-CcHhHHHHHHC-CC-eEEEEeCCHHHHHHHHH
Confidence            34456788899998764 24556667765 88 99999999998887765

>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A*

Probab=81.00  E-value=3.9  Score=36.25  Aligned_cols=56  Identities=18%  Similarity=0.228  Sum_probs=42.5

Q ss_pred             hhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEc--CChhHHHHHhhcCCCcc
Q 025895          188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID--IDPKKFDRGMSCVSSSK  243 (246)
Q Consensus       188 ~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~--~~~~~~~~~~~lg~~~~  243 (246)
                      +...++++++|+...+|..|++.+.+++.+|+.-++++.  .+..|++.++.+||.+.
T Consensus       154 ~~G~l~~g~tVV~aSsGN~G~AlA~aaa~~Gi~~~IvmP~~~s~~k~~~l~~~GAeVv  211 (435)
T 1jbq_A          154 RDGTLKPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIV  211 (435)
T ss_dssp             HHTCSCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEECSCCCHHHHHHHHHTTCEEE
T ss_pred             HcCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHhCCCEEE
Confidence            344567777777667799999999999999994444443  24678999999999854

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=80.99  E-value=2  Score=38.55  Aligned_cols=41  Identities=24%  Similarity=0.196  Sum_probs=33.0

Q ss_pred             CEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCChhHHHHHhh
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAA--GASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~--G~~~vi~~~~~~~~~~~~~~  237 (246)
                      .+|.|+|+|.+|+..+..+...  |. +|++++++++|.+.+++
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~-~V~~~D~~~~~v~~l~~   52 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHI-TVTVVDMNTAKIAEWNS   52 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTS-EEEEECSCHHHHHHHTS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCC-EEEEEECCHHHHHHHHC
Confidence            4799999999998755544444  67 89999999999988765

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=80.86  E-value=1.8  Score=39.90  Aligned_cols=32  Identities=25%  Similarity=0.231  Sum_probs=28.6

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      ..|+|+|+|+.|++++..+...|. +|+++++.
T Consensus        24 ~DVvIVGgG~AGl~aA~~Lar~G~-~V~LiEr~   55 (591)
T 3i3l_A           24 SKVAIIGGGPAGSVAGLTLHKLGH-DVTIYERS   55 (591)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHcCCC-CEEEEcCC
Confidence            579999999999998888888899 99999876

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=80.86  E-value=1.6  Score=39.88  Aligned_cols=33  Identities=39%  Similarity=0.557  Sum_probs=28.8

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      -.|+|+|+|..|+.++..+...|+ +|++++..+
T Consensus       127 ~DVvVVGaG~aGl~aA~~la~~G~-~V~vlEk~~  159 (571)
T 1y0p_A          127 VDVVVVGSGGAGFSAAISATDSGA-KVILIEKEP  159 (571)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            468999999999999998888999 899997765

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=80.85  E-value=1.2  Score=41.41  Aligned_cols=33  Identities=24%  Similarity=0.308  Sum_probs=28.8

Q ss_pred             CEEEEECCCHHHHHHHHHHHH-cCCCeEEEEcCCh
Q 025895          196 SIVAVFGLGTVGLAVAEGAKA-AGASRVIGIDIDP  229 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~-~G~~~vi~~~~~~  229 (246)
                      -.|+|+|+|+.|++++..+.. .|. +|+++++.+
T Consensus        33 ~dVlIVGaGpaGL~~A~~La~~~G~-~V~viEr~~   66 (639)
T 2dkh_A           33 VDVLIVGCGPAGLTLAAQLAAFPDI-RTCIVEQKE   66 (639)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCTTS-CEEEECSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence            369999999999999888888 899 899998764

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=80.84  E-value=2.9  Score=34.23  Aligned_cols=45  Identities=18%  Similarity=0.157  Sum_probs=36.8

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       191 ~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      .+.++.+||-+|.| .|..+..+++..|+ ++++++.+++.++.+++
T Consensus        79 ~~~~~~~vLDiGcG-~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~  123 (297)
T 2o57_A           79 VLQRQAKGLDLGAG-YGGAARFLVRKFGV-SIDCLNIAPVQNKRNEE  123 (297)
T ss_dssp             CCCTTCEEEEETCT-TSHHHHHHHHHHCC-EEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCC-CCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHH
Confidence            67888999999886 56777778887788 99999999988776654

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=80.79  E-value=2.4  Score=39.24  Aligned_cols=36  Identities=25%  Similarity=0.344  Sum_probs=32.2

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      .+.+|+|+|+|++|..++..+-..|..++..+|...
T Consensus       325 ~~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~  360 (615)
T 4gsl_A          325 KNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT  360 (615)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCC
Confidence            457899999999999999999999999999998754

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=80.73  E-value=2  Score=37.74  Aligned_cols=36  Identities=28%  Similarity=0.413  Sum_probs=32.5

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      .|+++.|+|.|.+|...++.++.+|+ +|++.+++.+
T Consensus       144 ~gktlGiIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~  179 (404)
T 1sc6_A          144 RGKKLGIIGYGHIGTQLGILAESLGM-YVYFYDIENK  179 (404)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCC-EEEEEcCCch
Confidence            57899999999999999999999999 9999988653

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=80.71  E-value=1.5  Score=39.94  Aligned_cols=33  Identities=42%  Similarity=0.596  Sum_probs=28.7

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      -.|+|+|+|..|+.++..+...|+ +|++++..+
T Consensus       122 ~DVvVVG~G~aGl~aA~~la~~G~-~V~vlEk~~  154 (566)
T 1qo8_A          122 TQVLVVGAGSAGFNASLAAKKAGA-NVILVDKAP  154 (566)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHTC-CEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            368999999999999888888899 899997665

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=80.65  E-value=3.3  Score=33.40  Aligned_cols=50  Identities=16%  Similarity=0.380  Sum_probs=39.9

Q ss_pred             hhCCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHhhc
Q 025895          188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRGMSC  238 (246)
Q Consensus       188 ~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~-~~vi~~~~~~~~~~~~~~l  238 (246)
                      +...+++|++||=+|+| .|..+..+|+..|. .+|++++.+++.++.+++.
T Consensus        71 ~~l~ikpG~~VldlG~G-~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~  121 (233)
T 4df3_A           71 IELPVKEGDRILYLGIA-SGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTV  121 (233)
T ss_dssp             SCCCCCTTCEEEEETCT-TSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHH
T ss_pred             hhcCCCCCCEEEEecCc-CCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Confidence            55789999999988874 36777788887764 4899999999988877654

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=80.49  E-value=4  Score=36.25  Aligned_cols=34  Identities=38%  Similarity=0.570  Sum_probs=29.2

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      .+.+|+|.|.|.+|..+++++...|+ +|+++..+
T Consensus       234 ~g~~vaVqGfGnVG~~~a~~L~e~Ga-kvVavsD~  267 (440)
T 3aog_A          234 EGARVAIQGFGNVGNAAARAFHDHGA-RVVAVQDH  267 (440)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEECS
T ss_pred             cCCEEEEeccCHHHHHHHHHHHHCCC-EEEEEEcC
Confidence            57899999999999999999999999 88855433

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=80.45  E-value=2.8  Score=31.45  Aligned_cols=49  Identities=14%  Similarity=0.118  Sum_probs=37.0

Q ss_pred             hhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       186 l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      +......+++++||-+|.| .|..+..+++. +. ++++++.+++..+.+++
T Consensus        44 l~~~~~~~~~~~vLdiG~G-~G~~~~~~~~~-~~-~v~~~D~~~~~~~~a~~   92 (194)
T 1dus_A           44 LVENVVVDKDDDILDLGCG-YGVIGIALADE-VK-STTMADINRRAIKLAKE   92 (194)
T ss_dssp             HHHHCCCCTTCEEEEETCT-TSHHHHHHGGG-SS-EEEEEESCHHHHHHHHH
T ss_pred             HHHHcccCCCCeEEEeCCC-CCHHHHHHHHc-CC-eEEEEECCHHHHHHHHH
Confidence            3455666788899988875 35666677776 66 99999999988877665

>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella}

Probab=80.42  E-value=1.9  Score=36.05  Aligned_cols=34  Identities=32%  Similarity=0.348  Sum_probs=28.6

Q ss_pred             CCCEEEEECC---CHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          194 PGSIVAVFGL---GTVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       194 ~~~~VlI~Ga---g~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      .++++||+|+   +++|...+..+...|+ +|++++++
T Consensus         8 ~~k~~lVTGa~~s~GIG~aia~~la~~G~-~Vv~~~r~   44 (319)
T 2ptg_A            8 RGKTAFVAGVADSNGYGWAICKLLRAAGA-RVLVGTWP   44 (319)
T ss_dssp             TTCEEEEECCCCTTSHHHHHHHHHHHTTC-EEEEEECH
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHHCCC-EEEEEecc
Confidence            3578999985   7999998888888999 89988754

>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*

Probab=80.39  E-value=4  Score=34.49  Aligned_cols=56  Identities=13%  Similarity=0.090  Sum_probs=42.3

Q ss_pred             hhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHhhcCCCcc
Q 025895          188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRGMSCVSSSK  243 (246)
Q Consensus       188 ~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~--~~~~~~~~~~lg~~~~  243 (246)
                      ....++++++|+...+|..|++.+..++.+|++-++++..  ++.|++.++.+|+++.
T Consensus        66 ~~g~l~~~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~  123 (325)
T 3dwg_A           66 ADGLLRPGATILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQII  123 (325)
T ss_dssp             HTTCCCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEE
T ss_pred             HcCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEE
Confidence            3445677778777677999999999999999954555433  4578889999999853

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=80.32  E-value=4.2  Score=33.36  Aligned_cols=50  Identities=24%  Similarity=0.298  Sum_probs=39.1

Q ss_pred             hhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhc
Q 025895          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSC  238 (246)
Q Consensus       186 l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~l  238 (246)
                      +.....+.++.+||=+|.| .|..++.+++. |+ +|+++|.+++-++.+++.
T Consensus        37 il~~l~l~~g~~VLDlGcG-tG~~a~~La~~-g~-~V~gvD~S~~ml~~Ar~~   86 (261)
T 3iv6_A           37 DIFLENIVPGSTVAVIGAS-TRFLIEKALER-GA-SVTVFDFSQRMCDDLAEA   86 (261)
T ss_dssp             HHHTTTCCTTCEEEEECTT-CHHHHHHHHHT-TC-EEEEEESCHHHHHHHHHH
T ss_pred             HHHhcCCCCcCEEEEEeCc-chHHHHHHHhc-CC-EEEEEECCHHHHHHHHHH
Confidence            3455678889999988875 46677777764 77 999999999988888764

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=80.22  E-value=1.7  Score=37.89  Aligned_cols=37  Identities=24%  Similarity=0.257  Sum_probs=32.7

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      -.+.+|.|+|.|.+|...++.++..|+ +|++.+++.+
T Consensus       114 l~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~  150 (380)
T 2o4c_A          114 LAERTYGVVGAGQVGGRLVEVLRGLGW-KVLVCDPPRQ  150 (380)
T ss_dssp             GGGCEEEEECCSHHHHHHHHHHHHTTC-EEEEECHHHH
T ss_pred             cCCCEEEEEeCCHHHHHHHHHHHHCCC-EEEEEcCChh
Confidence            367899999999999999999999999 9999976554

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=80.21  E-value=1.4  Score=38.56  Aligned_cols=36  Identities=19%  Similarity=0.333  Sum_probs=31.1

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCC--eEEEEcCCh
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGAS--RVIGIDIDP  229 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~--~vi~~~~~~  229 (246)
                      +..+|+|+|+ |.+|+.|++.++.+|+.  .|.+.|.++
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~  251 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKE  251 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHH
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccc
Confidence            4568899999 99999999999999985  688887765

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=80.06  E-value=2.4  Score=40.04  Aligned_cols=37  Identities=24%  Similarity=0.217  Sum_probs=31.8

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      +...+|+|+|+|+.|+.++..++..|. +|++++.++.
T Consensus       387 ~~~~~VvIIGgGpAGl~aA~~L~~~G~-~Vtlie~~~~  423 (729)
T 1o94_A          387 KNKDSVLIVGAGPSGSEAARVLMESGY-TVHLTDTAEK  423 (729)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSS
T ss_pred             cCCceEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCC
Confidence            345689999999999999999999999 8999987653

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=80.05  E-value=1.5  Score=36.72  Aligned_cols=34  Identities=18%  Similarity=0.130  Sum_probs=28.0

Q ss_pred             CCEEEEECC-CHHHHHHHHHHHHcC--CCeEEEEcCCh
Q 025895          195 GSIVAVFGL-GTVGLAVAEGAKAAG--ASRVIGIDIDP  229 (246)
Q Consensus       195 ~~~VlI~Ga-g~~G~~ai~~a~~~G--~~~vi~~~~~~  229 (246)
                      +.+|||+|+ |.+|...+..+...|  . +|+++++..
T Consensus        24 ~~~vlVtGatG~iG~~l~~~L~~~g~~~-~v~~~~~~~   60 (346)
T 4egb_A           24 AMNILVTGGAGFIGSNFVHYMLQSYETY-KIINFDALT   60 (346)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHCTTE-EEEEEECCC
T ss_pred             CCeEEEECCccHHHHHHHHHHHhhCCCc-EEEEEeccc
Confidence            468999998 999999999888888  5 777776653

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=80.02  E-value=3.2  Score=33.53  Aligned_cols=43  Identities=30%  Similarity=0.630  Sum_probs=34.4

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      ++++++||-+|.|. |..++.+++ .|+ +|+++|.++...+.+++
T Consensus       118 ~~~~~~VLDiGcG~-G~l~~~la~-~g~-~v~gvDi~~~~v~~a~~  160 (254)
T 2nxc_A          118 LRPGDKVLDLGTGS-GVLAIAAEK-LGG-KALGVDIDPMVLPQAEA  160 (254)
T ss_dssp             CCTTCEEEEETCTT-SHHHHHHHH-TTC-EEEEEESCGGGHHHHHH
T ss_pred             cCCCCEEEEecCCC-cHHHHHHHH-hCC-eEEEEECCHHHHHHHHH
Confidence            57789999998865 667777666 577 99999999988877665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	246
d1cdoa1	199	b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase	3e-51
d2fzwa1	197	b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase	4e-49
d1p0fa1	198	b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydro	2e-45
d1e3ia1	202	b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase	3e-45
d2jhfa1	198	b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase	1e-43
d1f8fa1	194	b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydr	1e-32
d1uufa1	179	b.35.1.2 (A:3-144,A:313-349) Hypothetical protein	1e-23
d1vj0a1	184	b.35.1.2 (A:2-155,A:338-367) Hypothetical protein	4e-23
d1llua1	175	b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase	1e-22
d1piwa1	192	b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehy	5e-22
d1d1ta2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	7e-19
d1e3ja1	178	b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sor	1e-17
d1jvba1	177	b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase	2e-17
d1e3ia2	174	c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (	4e-17
d1kola1	201	b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrog	1e-16
d1rjwa1	171	b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase	2e-15
d1p0fa2	174	c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog	4e-15
d1h2ba1	171	b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenas	1e-13
d1pl8a1	185	b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sor	1e-13
d2jhfa2	176	c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (	2e-13
d2fzwa2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	8e-12
d1jqba1	177	b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secon	2e-11
d1cdoa2	175	c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Ga	7e-11
d1f8fa2	174	c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {	1e-10
d1yb5a1	150	b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductas	5e-07
d1iz0a1	131	b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase	1e-06
d1jqba2	174	c.2.1.1 (A:1140-1313) Bacterial secondary alcohol	9e-06
d1vj0a2	182	c.2.1.1 (A:156-337) Hypothetical protein TM0436 {T	1e-05
d1xa0a1	152	b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homo	2e-05
d1gu7a1	175	b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA redu	5e-05
d1kola2	195	c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Ps	1e-04
d1mv8a2	202	c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pse	4e-04
d1qora1	147	b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductas	7e-04
d1dlja2	196	c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGD	9e-04

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 199

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score =  163 bits (414), Expect = 3e-51
 Identities = 95/200 (47%), Positives = 129/200 (64%), Gaps = 1/200 (0%)

Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           +T G+VI CKAAVAWE NKPLVIE+++V  P A E+RIKI+ T +CHTD Y       + 
Sbjct: 1   ATVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKD 60

Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
            FP +LGHE AGIVESVG GVTE QPG+ VIP + ++C EC+FC+S KTN C K   A  
Sbjct: 61  GFPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGW-ANE 119

Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
           +  +M+ +++RF+  G+ +  F+GTSTFSQYTVV+ ++VAKIDP   LD+       + +
Sbjct: 120 SPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSVKLDEFITHRMPLES 179

Query: 182 GLGAVWNTAKVEPGSIVAVF 201
              A+      +    V   
Sbjct: 180 VNDAIDLMKHGKCIRTVLSL 199

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 197

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score =  158 bits (400), Expect = 4e-49
 Identities = 111/196 (56%), Positives = 132/196 (67%), Gaps = 1/196 (0%)

Query: 5   GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFP 64
            +VI CKAAVAWE  KPL IE+++VAPP+A EVRIKI+ TA+CHTDAYT SG DPEG FP
Sbjct: 2   NEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFP 61

Query: 65  CILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGV 124
            ILGH  AGIVESVGEGVT+++ GD VIP Y  +C ECKFC + KTNLC K+R   G G 
Sbjct: 62  VILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG- 120

Query: 125 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 184
           +M D  SRF+  GK I H+MGTSTFS+YTVV D+SVAKIDP   +D+             
Sbjct: 121 LMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLIKVDEFVTHNLSFDEINK 180

Query: 185 AVWNTAKVEPGSIVAV 200
           A       +    V  
Sbjct: 181 AFELMHSGKSIRTVVK 196

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score =  148 bits (374), Expect = 2e-45
 Identities = 92/208 (44%), Positives = 125/208 (60%), Gaps = 12/208 (5%)

Query: 3   TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL 62
           T G+ ITCKAAVAWEP+KPL +E + VAPP+A EVRIKIL + +C +D+       P   
Sbjct: 2   TAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPSK- 60

Query: 63  FPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGA 122
           FP ILGHEA G+VES+G GVT V+PGD VIP +  +C  C+ CKS  +N C K       
Sbjct: 61  FPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAK- 119

Query: 123 GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTG 182
             +M D  SRF+  GKPIY+ MGTSTF++YTVV D++VAKIDP+  ++ +      +   
Sbjct: 120 TGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKINVNFLVSTKLTL--- 176

Query: 183 LGAVWNTAKVEPGSIVAVFGLGTVGLAV 210
                   ++     +   G G   + +
Sbjct: 177 -------DQINKAFELLSSGQGVRSIMI 197

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 202

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score =  148 bits (374), Expect = 3e-45
 Identities = 89/201 (44%), Positives = 126/201 (62%), Gaps = 7/201 (3%)

Query: 3   TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL 62
           T+G+VI CKAA+AW+   PL IE+++V+PP+A EVRI+++ T +C TD         + L
Sbjct: 2   TQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATD-PKKKAL 60

Query: 63  FPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGA 122
           FP +LGHE AGIVESVG GVT  +PGD VIP +  +C+ CK C S  TNLCGK+R     
Sbjct: 61  FPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYP 120

Query: 123 GV---MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGV 179
            +   +M DR SRF+  G+ IYHFMG S+FSQYTVV + ++A++D +  LD +       
Sbjct: 121 TIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEFDLDLLVTHALPF 180

Query: 180 PTGLGAVWNTAKVEPGSIVAV 200
            +   A+     ++ G  +  
Sbjct: 181 ESINDAI---DLMKEGKSIRT 198

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score =  144 bits (363), Expect = 1e-43
 Identities = 97/201 (48%), Positives = 121/201 (60%), Gaps = 5/201 (2%)

Query: 2   STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           ST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++ T +C +D +  SG     
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP 60

Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
             P I GHEAAGIVES+GEGVT V+PGD VIP +  +C +C+ CK  + N C K   +  
Sbjct: 61  -LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMP 119

Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
            G M  D  SRF+  GKPI+HF+GTSTFSQYTVV ++SVAKID    LD    L   V  
Sbjct: 120 RGTMQ-DGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAAFALD---PLITHVLP 175

Query: 182 GLGAVWNTAKVEPGSIVAVFG 202
                     +  G  +    
Sbjct: 176 FEKINEGFDLLRSGESIRTIL 196

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 194

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score =  115 bits (289), Expect = 1e-32
 Identities = 50/194 (25%), Positives = 85/194 (43%), Gaps = 5/194 (2%)

Query: 9   TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILG 68
              AAV         ++ +++  PQ  EV +K++ T +CHTD      K P    P +LG
Sbjct: 3   DIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPVP-LPAVLG 61

Query: 69  HEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128
           HE +GI+E++G  VTE+Q GDHV+  Y   C +C  C +G    C +  G   +G     
Sbjct: 62  HEGSGIIEAIGPNVTELQVGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGADSEG 120

Query: 129 RKSRFSINGK--PIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
                  + +     HF   S+F+ Y +  + +  K+    P D++            A+
Sbjct: 121 N-HALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDFPFDQLVKFYAFDEINQAAI 179

Query: 187 WNTAKVEPGSIVAV 200
            +   +    I+ +
Sbjct: 180 DSRKGITLKPIIKI 193

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 179

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

 Score = 91.9 bits (227), Expect = 1e-23
 Identities = 45/177 (25%), Positives = 73/177 (41%), Gaps = 16/177 (9%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           KA  A+   +PL   D+    P   +V+I+I +  +CH+D +    +    ++PC+ GHE
Sbjct: 2   KAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHE 61

Query: 71  AAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDR 129
             G V +VG+ V +  PGD V + C    C+ C+ C+ G  N C  + G T         
Sbjct: 62  IVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTG-TYNSPT---- 116

Query: 130 KSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ-APLDKVCLLGCGVPTGLGA 185
                    P         +SQ  VVH+  V +I      + +   +       L  
Sbjct: 117 ---------PDEPGHTLGGYSQQIVVHERYVLRIRVADIEMIRADQINEAYERMLRG 164

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 184

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 90.7 bits (224), Expect = 4e-23
 Identities = 42/200 (21%), Positives = 74/200 (37%), Gaps = 26/200 (13%)

Query: 8   ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
           +   A V  + N+PLV ++ +++    G + ++IL   +C +D + + G+DP    P IL
Sbjct: 3   LKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIIL 62

Query: 68  GHEAAGIVESVGEGVTEVQPGD-----HVIPCYQAECRECKFCKSGKTNLCGKVRGATGA 122
           GHE AG V  V     ++          ++      C EC +CK  K       R   G 
Sbjct: 63  GHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYG- 121

Query: 123 GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH-DVSVAKIDPQAPLDKVCLLGCGVPT 181
              +N   S +        H  G   +S + V+  +  V K+  +        L      
Sbjct: 122 ---INRGCSEYP-------HLRG--CYSSHIVLDPETDVLKVSEKITHRLP--LKEAN-- 165

Query: 182 GLGAVWNTAKVEPGSIVAVF 201
                    +      V ++
Sbjct: 166 ---KALELMESREALKVILY 182

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 89.2 bits (220), Expect = 1e-22
 Identities = 53/196 (27%), Positives = 78/196 (39%), Gaps = 30/196 (15%)

Query: 9   TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCIL 67
           T KAAV      PL IE+V+V  P  G+V +KI  + +CHTD +   G  P +   P I 
Sbjct: 5   TMKAAVVHAYGAPLRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPFIP 64

Query: 68  GHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           GHE  G V +VG GVT V+ GD V IP     C  C+ C +G   LC             
Sbjct: 65  GHEGVGYVAAVGSGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLC------------- 111

Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
                      +    +     +++Y +     V  +    P +    +  G    +  +
Sbjct: 112 ---------ESQQNTGYSVNGGYAEYVLADPNYVGIL----PKNVKATIHPGKLDDINQI 158

Query: 187 WNTAK--VEPGSIVAV 200
            +  +     G IV  
Sbjct: 159 LDQMRAGQIEGRIVLE 174

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 192

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 88.0 bits (217), Expect = 5e-22
 Identities = 30/196 (15%), Positives = 60/196 (30%), Gaps = 20/196 (10%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPP--QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILG 68
           +             +  +  P      ++ IKI    +C +D +  +G       P ++G
Sbjct: 8   EGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPLVVG 67

Query: 69  HEAAGIVESVGEGVTE-VQPGDH-VIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           HE  G V  +G      ++ G    +      C EC  CK+     C             
Sbjct: 68  HEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYC------------- 114

Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
              K   + +      ++    ++ Y  VH+  V  I     ++ + +   GV      +
Sbjct: 115 --TKFVTTYSQPYEDGYVSQGGYANYVRVHEHFVVPIPENIWVETLPVGEAGVHEAFERM 172

Query: 187 WNTAKVEPGSIVAVFG 202
                V     +  + 
Sbjct: 173 -EKGDVRYRFTLVGYD 187

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 79.1 bits (194), Expect = 7e-19
 Identities = 42/72 (58%), Positives = 53/72 (73%)

Query: 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 226
           AP +KVCL+GCG  TG GA   T KV+PGS   VFGLG VGL+V  G K+AGASR+IGID
Sbjct: 2   APPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGID 61

Query: 227 IDPKKFDRGMSC 238
           ++  KF++ M+ 
Sbjct: 62  LNKDKFEKAMAV 73

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 178

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score = 75.4 bits (184), Expect = 1e-17
 Identities = 41/194 (21%), Positives = 75/194 (38%), Gaps = 26/194 (13%)

Query: 12  AAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSG---KDPEGLFPCILG 68
           +AV ++ N  L +E   +  P+  EV +++ +  +C +D + +      D     P ++G
Sbjct: 4   SAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIG 62

Query: 69  HEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128
           HEA+G V  VG+ V  ++ GD V       CR C+FCK GK NLC               
Sbjct: 63  HEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLC--------------- 107

Query: 129 RKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN 188
                  +             ++Y V       K+     + ++      +   + A   
Sbjct: 108 ------PDLTFCATPPDDGNLARYYVHAADFCHKLPDNCNVKQLVTHSFKLEQTVDAF-E 160

Query: 189 TAKVEPGSIVAVFG 202
            A+ +  + + V  
Sbjct: 161 AARKKADNTIKVMI 174

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 75.4 bits (184), Expect = 2e-17
 Identities = 38/185 (20%), Positives = 66/185 (35%), Gaps = 31/185 (16%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL-------- 62
           +A    E  KPL ++++ V  P+  +V IK+    +CH+D +   G+             
Sbjct: 2   RAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVK 61

Query: 63  FPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGA 122
            P  LGHE AG +E VG+ V     GD V          C +C+ G+ +LC   R     
Sbjct: 62  LPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPR----- 116

Query: 123 GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVS-VAKIDPQAPLDKVCLLGCGVPT 181
                                     +++Y +V     + K+    P+    +       
Sbjct: 117 -----------------WLGINFDGAYAEYVIVPHYKYMYKLRRVKPMITKTMKLEEANE 159

Query: 182 GLGAV 186
            +  +
Sbjct: 160 AIDNL 164

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score = 74.2 bits (181), Expect = 4e-17
 Identities = 41/66 (62%), Positives = 49/66 (74%)

Query: 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 226
           A L++VCL+GCG  +G GA  NTAKV PGS  AVFGLG VGL+   G K AGASR+I ID
Sbjct: 1   ANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAID 60

Query: 227 IDPKKF 232
           I+ +KF
Sbjct: 61  INGEKF 66

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 201

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 73.8 bits (180), Expect = 1e-16
 Identities = 41/218 (18%), Positives = 73/218 (33%), Gaps = 28/218 (12%)

Query: 11  KAAVAWEPNKPLVIEDVQV-------APPQAGEVRIKILFTALCHTDAYTWSGKDPEGLF 63
           +  V     K + ++ +                V +K++ T +C +D +   G       
Sbjct: 3   RGVVYLGSGK-VEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRG-RTTAQV 60

Query: 64  PCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAG 123
             +LGHE  G V   G  V  +Q GD V   +   C  C+ CK   T +C  V  A   G
Sbjct: 61  GLVLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGG 120

Query: 124 VMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH--DVSVAKIDPQAPLDKVCLLGCGVPT 181
                    ++               ++Y +V   D ++ K+  +    +   +   V  
Sbjct: 121 AYGYVDMGDWTG------------GQAEYVLVPYADFNLLKLPDRDKAMEKINIAEVVGV 168

Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA 219
            + ++ + A    G     F  G     V +  K   A
Sbjct: 169 QVISLDD-APRGYG----EFDAGVPKKFVIDPHKTFSA 201

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 69.6 bits (169), Expect = 2e-15
 Identities = 50/196 (25%), Positives = 75/196 (38%), Gaps = 32/196 (16%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL-GH 69
           KAAV  +  +PL I++V+      GEV ++I    +CHTD +   G  P      ++ GH
Sbjct: 2   KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGH 61

Query: 70  EAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128
           E  GIVE VG GVT ++ GD V IP   + C  C +C SG+  LC               
Sbjct: 62  EGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLC--------------- 106

Query: 129 RKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCL--LGCGVPTGLGAV 186
                    +    +     +++Y       V KI     ++   L  +       L   
Sbjct: 107 -------EHQKNAGYSVDGGYAEYCRAAADYVVKIPDNTIIEVQPLEKINEVFDRMLKGQ 159

Query: 187 WNTAKVEPGSIVAVFG 202
                   G +V    
Sbjct: 160 I------NGRVVLTLE 169

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score = 68.7 bits (167), Expect = 4e-15
 Identities = 40/68 (58%), Positives = 46/68 (67%), Gaps = 1/68 (1%)

Query: 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 226
           APL+  CL+GCG  TG GA  NTAKV PGS  AVFGLG VG +   G KAAGASR+IG+ 
Sbjct: 1   APLES-CLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVG 59

Query: 227 IDPKKFDR 234
               KF +
Sbjct: 60  THKDKFPK 67

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 65.1 bits (157), Expect = 1e-13
 Identities = 47/194 (24%), Positives = 68/194 (35%), Gaps = 28/194 (14%)

Query: 11  KAAVAWEPNKPLVIEDVQV-APPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFP---CI 66
           KAA   E NKPL IEDV         +V ++I    +CHTD +   G   E L P     
Sbjct: 1   KAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYT 60

Query: 67  LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
           LGHE  G +E V EGV  ++ GD VI         C  C++G+   C  +          
Sbjct: 61  LGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLE--------- 111

Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
                                 F+++      SV K+     ++        +   L  +
Sbjct: 112 -------------FPGLNIDGGFAEFMRTSHRSVIKLPKDVRVEVDIHKLDEINDVLERL 158

Query: 187 WNTAKVEPGSIVAV 200
                   G  V +
Sbjct: 159 EKGEV--LGRAVLI 170

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.3 bits (158), Expect = 1e-13
 Identities = 38/193 (19%), Positives = 62/193 (32%), Gaps = 28/193 (14%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL---FPCIL 67
            + V   P   L +E+  +  P   EV +++    +C +D + W            P +L
Sbjct: 9   LSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVL 67

Query: 68  GHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMN 127
           GHEA+G VE VG  V  ++PGD V     A     +FCK G+ NL   +          N
Sbjct: 68  GHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGN 127

Query: 128 DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW 187
                                  ++   +     K+                       +
Sbjct: 128 ---------------------LCRFYKHNAAFCYKLPDNVKPLVTHRFPLEKAL---EAF 163

Query: 188 NTAKVEPGSIVAV 200
            T K   G  + +
Sbjct: 164 ETFKKGLGLKIML 176

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 64.2 bits (155), Expect = 2e-13
 Identities = 40/72 (55%), Positives = 50/72 (69%)

Query: 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 226
           +PL+KVCL+GCG  TG G+    AKV  GS  AVFGLG VGL+V  G KAAGA+R+IG+D
Sbjct: 1   SPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVD 60

Query: 227 IDPKKFDRGMSC 238
           I+  KF +    
Sbjct: 61  INKDKFAKAKEV 72

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 60.0 bits (144), Expect = 8e-12
 Identities = 48/67 (71%), Positives = 54/67 (80%)

Query: 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 226
           APLDKVCLLGCG+ TG GA  NTAK+EPGS+ AVFGLG VGLAV  G K AGASR+IG+D
Sbjct: 1   APLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVD 60

Query: 227 IDPKKFD 233
           I+  KF 
Sbjct: 61  INKDKFA 67

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 58.8 bits (141), Expect = 2e-11
 Identities = 35/203 (17%), Positives = 60/203 (29%), Gaps = 33/203 (16%)

Query: 11  KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
           K       NK L   + +     + +  ++ L  + C +D +T            ILGHE
Sbjct: 2   KGFAMLGINK-LGWIEKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGALGDRKNMILGHE 60

Query: 71  AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRK 130
           A G V  VG  V + +PGD VI             ++G                      
Sbjct: 61  AVGEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFQQHSNG--------------- 105

Query: 131 SRFSINGKPIYHFMGTSTFSQYTVVH--DVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN 188
               +     +       F +Y  V+  D+++A +     L K+         G   +  
Sbjct: 106 ----MLAGWKFSNFKDGVFGEYFHVNDADMNLAILPKDVDLSKLVTHVY---HGFDHIEE 158

Query: 189 TAKVEPGSIVAVFGLGTVGLAVA 211
                    + +       L  A
Sbjct: 159 A--------LLLMKDKPKDLIKA 173

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 57.3 bits (137), Expect = 7e-11
 Identities = 45/67 (67%), Positives = 51/67 (76%)

Query: 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 226
           APLD VCLLGCGV TG GA  NTAKVEPGS  AVFGLG VGLA   G  +AGA R+I +D
Sbjct: 1   APLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVD 60

Query: 227 IDPKKFD 233
           ++P KF+
Sbjct: 61  LNPDKFE 67

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 56.8 bits (136), Expect = 1e-10
 Identities = 27/66 (40%), Positives = 37/66 (56%)

Query: 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI 227
           P++ +  LGCG+ TG GA  N  KV P S    +G G VGL+    AK  GAS +I +DI
Sbjct: 2   PIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDI 61

Query: 228 DPKKFD 233
              + +
Sbjct: 62  VESRLE 67

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} Length = 150

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (107), Expect = 5e-07
 Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 4/99 (4%)

Query: 11  KAAVAWEPNKPLVIE---DVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCI 66
           +A   +E   P V++   D+ V  P+  +V IK+    +   + Y  SG    + L P  
Sbjct: 4   RAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYT 63

Query: 67  LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFC 105
            G + AG++E+VG+  +  + GD V           ++ 
Sbjct: 64  PGSDVAGVIEAVGDNASAFKKGDRVFTSSTISGGYAEYA 102

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Length = 131

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

 Score = 44.0 bits (103), Expect = 1e-06
 Identities = 14/59 (23%), Positives = 21/59 (35%)

Query: 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGH 69
          KA V      PL + D+     + GEV +++    L   D     G     L P  +  
Sbjct: 2  KAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPG 60

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 42.6 bits (99), Expect = 9e-06
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLA 209
           PL+   ++   + TG       A +E GS V V G+G VGL 
Sbjct: 2   PLENAVMITDMMTTGFHGA-ELADIEMGSSVVVIGIGAVGLM 42

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 42.2 bits (98), Expect = 1e-05
 Identities = 10/39 (25%), Positives = 15/39 (38%)

Query: 169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVG 207
           LD + +  C   T   A     +   G  V + G G +G
Sbjct: 3   LDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLG 41

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} Length = 152

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 41.8 bits (97), Expect = 2e-05
 Identities = 10/93 (10%), Positives = 26/93 (27%), Gaps = 3/93 (3%)

Query: 9  TCKAAVAWEPNKPLV--IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCI 66
            +A V  +        ++ + +     G+V +++ ++++ + D                
Sbjct: 3  AFQAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKT-YP 61

Query: 67 LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAEC 99
                     V       + GD VI       
Sbjct: 62 FVPGIDLAGVVVSSQHPRFREGDEVIATGYEIG 94

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score = 40.5 bits (93), Expect = 5e-05
 Identities = 16/104 (15%), Positives = 30/104 (28%), Gaps = 5/104 (4%)

Query: 7   VITCKAAVAWEPNKP-----LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
           +IT +A +  +  +P         ++        EV +K L + +  +D     G  P  
Sbjct: 1   MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSK 60

Query: 62  LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFC 105
                             EG+ EV      +   +A        
Sbjct: 61  PAKTTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSH 104

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 195

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 39.4 bits (91), Expect = 1e-04
 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGA 214
           +  +  L   +PTG       A V PGS V V G G VGLA A  A
Sbjct: 1   IRDLTCLSDILPTGYHGAVT-AGVGPGSTVYVAGAGPVGLAAAASA 45

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 202

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 38.1 bits (87), Expect = 4e-04
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           +++FGLG VG   A    A G   VIG+D+   K D 
Sbjct: 3   ISIFGLGYVGAVCAGCLSARG-HEVIGVDVSSTKIDL 38

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} Length = 147

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

 Score = 36.9 bits (84), Expect = 7e-04
 Identities = 26/84 (30%), Positives = 35/84 (41%)

Query: 22  LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 81
           L   +   A P   E++++     +   D Y  SG  P    P  LG EAAGIV  VG G
Sbjct: 15  LQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKVGSG 74

Query: 82  VTEVQPGDHVIPCYQAECRECKFC 105
           V  ++ GD V+    A        
Sbjct: 75  VKHIKAGDRVVYAQSALGAYSSVH 98

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} Length = 196

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 36.9 bits (84), Expect = 9e-04
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
           +AV G G VGL++      +  + V  +DI P K D+
Sbjct: 3   IAVAGSGYVGLSLG--VLLSLQNEVTIVDILPSKVDK 37

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	246
d1cdoa1	199	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	100.0
d2fzwa1	197	Alcohol dehydrogenase {Human (Homo sapiens), diffe	100.0
d1e3ia1	202	Alcohol dehydrogenase {Mouse (Mus musculus), class	100.0
d1f8fa1	194	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	100.0
d1p0fa1	198	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	100.0
d1e3ja1	178	Ketose reductase (sorbitol dehydrogenase) {Silverl	100.0
d2jhfa1	198	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	100.0
d1llua1	175	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	100.0
d1h2ba1	171	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	100.0
d1vj0a1	184	Hypothetical protein TM0436 {Thermotoga maritima [	100.0
d1pl8a1	185	Ketose reductase (sorbitol dehydrogenase) {Human (	100.0
d1jqba1	177	Bacterial secondary alcohol dehydrogenase {Clostri	100.0
d1piwa1	192	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	100.0
d1kola1	201	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	100.0
d1jvba1	177	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	100.0
d1rjwa1	171	Alcohol dehydrogenase {Bacillus stearothermophilus	100.0
d1uufa1	179	Hypothetical protein YahK {Escherichia coli [TaxId	100.0
d1yb5a1	150	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.97
d1qora1	147	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.96
d1xa0a1	152	B. subtilis YhfP homologue {Bacillus stearothermop	99.95
d1iz0a1	131	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.95
d1gu7a1	175	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.93
d1o89a1	146	Hypothetical protein YhdH {Escherichia coli [TaxId	99.92
d1tt7a1	162	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.92
d1v3va1	147	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.68
d1vj1a1	166	Putative zinc-binding alcohol dehydrogenase {Mouse	99.65
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.58
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.58
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.57
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.57
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.55
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.54
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.52
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	99.51
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.51
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.5
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.49
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	99.49
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.49
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	99.47
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.47
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	99.45
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	99.43
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	99.42
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	99.41
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	99.38
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.38
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.36
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.36
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.33
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.31
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	99.31
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.28
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	99.19
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.09
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.59
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.23
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	96.96
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	96.75
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.45
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	96.32
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	96.18
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.18
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.15
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	96.09
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	96.06
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	95.86
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	95.84
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	95.82
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	95.79
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	95.74
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	95.64
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	95.59
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	95.58
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	95.53
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	95.33
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	95.3
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	94.9
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	94.65
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	94.5
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.34
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	94.26
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	94.08
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	93.97
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	93.95
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	93.9
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	93.86
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	93.76
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	93.69
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	93.51
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	93.42
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	93.25
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	93.21
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	93.09
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	93.07
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	92.99
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	92.94
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	92.87
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	92.8
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	92.78
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	92.6
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	92.24
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	92.23
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	91.92
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	91.54
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	91.51
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	91.48
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	91.17
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	91.1
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	91.07
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	91.06
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	91.02
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	90.99
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	90.48
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	90.45
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	90.11
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	89.93
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	89.48
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	89.37
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	89.3
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	89.17
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	89.13
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	89.03
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	88.94
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	88.1
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	87.71
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	87.55
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	87.43
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	87.33
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	87.14
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	87.1
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	87.03
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	86.95
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	86.7
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	86.41
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	86.09
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	85.98
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	85.6
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	85.38
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	85.34
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	85.3
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	85.2
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	85.2
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	84.93
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	84.91
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	84.81
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	84.69
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	84.55
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	84.42
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	83.89
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	83.63
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	83.46
d1p3ha_	99	Chaperonin-10 (GroES) {Mycobacterium tuberculosis	83.3
d1jbqa_	355	Cystathionine beta-synthase {Human (Homo sapiens)	83.12
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	83.11
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	83.11
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	82.96
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	82.8
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	82.56
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	82.46
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	82.43
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	82.43
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	82.38
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	81.6
d2bhsa1	292	O-acetylserine sulfhydrylase (Cysteine synthase) {	81.41
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	81.05
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	80.69
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	80.3

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=100.00  E-value=1.3e-40  Score=269.37  Aligned_cols=198  Identities=48%  Similarity=0.776  Sum_probs=183.5

Q ss_pred             CCCcccceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCC
Q 025895            3 TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGV   82 (246)
Q Consensus         3 ~~~~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~   82 (246)
                      |.+..+|+||++++++++|++++|+|.|+|++|||+||++++|||++|++.+.+......+|.++|||++|+|+++|+++
T Consensus         2 ~~~~~~~~kAav~~~~~~pl~i~ev~~P~p~~~eVlIkv~a~giCgsD~~~~~g~~~~~~~p~i~GhE~~G~v~~vG~~v   81 (199)
T d1cdoa1           2 TVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDGFPVVLGHEGAGIVESVGPGV   81 (199)
T ss_dssp             CTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCCTTSCSEECCCCEEEEEEEECTTC
T ss_pred             CCCCceEEEEEEEecCCCCcEEEEEECCCCCCCEEEEEEEEEEEecchhhhhhhcccccccccccccccceEEEEEcCCC
Confidence            56788999999999999999999999999999999999999999999999999977777889999999999999999999


Q ss_pred             CccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEE
Q 025895           83 TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAK  162 (246)
Q Consensus        83 ~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  162 (246)
                      ++|++||||++.+...|+.|.+|.+++.+.|.+.+.....+.. .++..+...+|...+.....|+|+||+++|.+++++
T Consensus        82 ~~~~~GdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~Ggfaey~~v~~~~~~~  160 (199)
T d1cdoa1          82 TEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVM-SPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAK  160 (199)
T ss_dssp             CSCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTT-SCSCCCEEETTEEEEEGGGTCCSBSEEEEEGGGEEE
T ss_pred             ceecCCCEEEEeeeccccccccccCCCcccccccccccccccc-cCcccceeeccceeecccccCCceEEEEEchHHEEE
Confidence            9999999999999999999999999999999987766555554 677777888888888888899999999999999999


Q ss_pred             cCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEE
Q 025895          163 IDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF  201 (246)
Q Consensus       163 ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~  201 (246)
                      +|+++++++++++.+++.|++.++......+.|++|||+
T Consensus       161 iP~~~~~~~aa~l~~~l~t~~~av~~~~~~~~G~tVlv~  199 (199)
T d1cdoa1         161 IDPSVKLDEFITHRMPLESVNDAIDLMKHGKCIRTVLSL  199 (199)
T ss_dssp             CCTTSCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEeC
Confidence            999999999999999999999998888889999999984

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=100.00  E-value=4.9e-39  Score=259.46  Aligned_cols=196  Identities=57%  Similarity=0.886  Sum_probs=174.7

Q ss_pred             CcccceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCc
Q 025895            5 GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTE   84 (246)
Q Consensus         5 ~~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~   84 (246)
                      .++++|||++++++++||+++|+|.|+|+++|||||++++|||++|+++++|.+....+|.++|||++|+|+++|++++.
T Consensus         2 ~~~~~~kAav~~~~g~~l~i~evp~P~p~~~eVLVkv~a~gic~sD~~~~~G~~~~~~~p~v~GhE~~G~V~~vG~~V~~   81 (197)
T d2fzwa1           2 NEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHLGAGIVESVGEGVTK   81 (197)
T ss_dssp             CCCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCTTCCSSBCCCCEEEEEEEEECTTCCS
T ss_pred             CCceEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEecCCCCcHHHHcCCcccccccccCCcceeeEEEeecCCcee
Confidence            46789999999999999999999999999999999999999999999999998777789999999999999999999999


Q ss_pred             cCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcC
Q 025895           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (246)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip  164 (246)
                      +++||+|++.+...|+.|.+|.++....|.+.......+.. .+...++..+|..+++..+.|+|+||+++|+.+++++|
T Consensus        82 ~~~GdrV~v~~~~~cg~c~~c~~g~~~~C~~~~~~~~~~~~-~~~~~~~~~~g~~v~~~~g~GgfAey~vvp~~~~~~vp  160 (197)
T d2fzwa1          82 LKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLM-PDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKID  160 (197)
T ss_dssp             CCTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCC-TTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEECC
T ss_pred             cCCCCEEEEccccccccccccccCccccCcccccccccccc-CCccceeccCCcceecccccccceeEEEechHHEEECC
Confidence            99999999999999999999999999999986554334444 55555666778888888888999999999999999999


Q ss_pred             CCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEE
Q 025895          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF  201 (246)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~  201 (246)
                      +++++++++.+.+++.|++.++.....-+.+++|||+
T Consensus       161 ~~l~~~~aa~~~~~~~t~~~a~~~~~~g~~~~tvvvi  197 (197)
T d2fzwa1         161 PLIKVDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI  197 (197)
T ss_dssp             TTSCSGGGEEEEEEGGGHHHHHHHHHHTCCSEEEEEC
T ss_pred             CCCCHHHHhhhhhHHHHHHHHHHhccCCCcCCEEEeC
Confidence            9999999999999999988876554555678888874

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=100.00  E-value=1.8e-37  Score=251.37  Aligned_cols=194  Identities=46%  Similarity=0.831  Sum_probs=168.3

Q ss_pred             CCcccceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCC
Q 025895            4 EGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVT   83 (246)
Q Consensus         4 ~~~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~   83 (246)
                      ...++||||++++++++|++++|+|.|+|+++||||||+++|||++|+++++|.++. .+|.++|||++|+|+++|++++
T Consensus         3 ~~~~~~~KAaV~~~~g~pl~i~evp~P~p~~geVlVkv~a~gic~sD~~~~~G~~~~-~~P~v~GHE~~G~V~~vG~~V~   81 (202)
T d1e3ia1           3 QGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKKA-LFPVVLGHECAGIVESVGPGVT   81 (202)
T ss_dssp             TTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHTTCTTSCC-CSSBCCCCEEEEEEEEECTTCC
T ss_pred             CCCeEEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEEEEeccccceeeeeccc-ccccccccccceEEeeecCCce
Confidence            355789999999999999999999999999999999999999999999999987654 6799999999999999999999


Q ss_pred             ccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCC---CCceecCCCccccccCCcceeeccCCcceeeeEEeecCce
Q 025895           84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT---GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSV  160 (246)
Q Consensus        84 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~---~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  160 (246)
                      ++++||||++.+...|+.|.+|..+..+.|.+.+...   ..+....++..++..+|..+++..+.|+|+||+++|+.++
T Consensus        82 ~~~~GdrV~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~G~faey~~v~~~~l  161 (202)
T d1e3ia1          82 NFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANL  161 (202)
T ss_dssp             SCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGE
T ss_pred             eccCCCEEEEEeeccccccccccCCcccccccccccccCccceecccccccccccCceeeecccccCCceEEEEEehhhE
Confidence            9999999999999999999999999999999766531   1222234556667777888888888999999999999999


Q ss_pred             EEcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEE
Q 025895          161 AKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF  201 (246)
Q Consensus       161 ~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~  201 (246)
                      +++|++++++.++.+.+++.+.+.++ +  .+++|++|.|+
T Consensus       162 ~~lP~~~~~~~~~~~~~~~~~~~~a~-~--~~k~G~~V~vi  199 (202)
T d1e3ia1         162 ARVDDEFDLDLLVTHALPFESINDAI-D--LMKEGKSIRTI  199 (202)
T ss_dssp             EECCTTSCGGGGEEEEEEGGGHHHHH-H--HHHTTCCSEEE
T ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHH-H--hCCCCCEEEEE
Confidence            99999999998888887777777654 2  25788888775

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=100.00  E-value=2.2e-37  Score=249.10  Aligned_cols=191  Identities=27%  Similarity=0.511  Sum_probs=158.4

Q ss_pred             ccceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccC
Q 025895            7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQ   86 (246)
Q Consensus         7 ~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~   86 (246)
                      |++|+|+++.+++++|+++|+|.|+|++||||||+.+++||++|++++.|.++. ++|.++|||++|+|+++|+++++|+
T Consensus         1 ~k~~~Aav~~~~g~~l~l~~v~~P~p~~geVlVkv~a~gic~sD~~~~~G~~~~-~~P~i~GHE~~G~V~~vG~~v~~~~   79 (194)
T d1f8fa1           1 LKDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPV-PLPAVLGHEGSGIIEAIGPNVTELQ   79 (194)
T ss_dssp             CEEEEEEEBCSTTCCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSCC-CSSBCCCCEEEEEEEEECTTCCSCC
T ss_pred             CceeEEEEEcCCCCCcEEEEeeCCCCCCCEEEEEEEEEEecCchHhhhhhcccc-cCCcccccceEEEeeecCccceeEc
Confidence            578999999999999999999999999999999999999999999999988654 6899999999999999999999999


Q ss_pred             CCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCC--cceeeccCCcceeeeEEeecCceEEcC
Q 025895           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSING--KPIYHFMGTSTFSQYTVVHDVSVAKID  164 (246)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~ip  164 (246)
                      +||||+. +..+|++|.+|.++.++.|.+.......|.. .+|...+....  ....+..+.|+|+||.+++..+++++|
T Consensus        80 vGDrVv~-~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~-~dg~~~~~~~~~~~~~~~~~~~g~fae~~~v~~~~~~~ip  157 (194)
T d1f8fa1          80 VGDHVVL-SYGYCGKCTQCNTGNPAYCSEFFGRNFSGAD-SEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVT  157 (194)
T ss_dssp             TTCEEEE-CCCCCSSSHHHHTTCGGGCTTHHHHSSSSSC-SSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEEEEC
T ss_pred             cCceeee-ecccccCChhhhCCCcccccccccceecccc-ccceeeeecCCceeeccccccccccceeEEEehHHEEECC
Confidence            9999955 4558999999999999999986444334443 44433333222  223334566899999999999999999


Q ss_pred             CCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Q 025895          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI  225 (246)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~  225 (246)
                      ++++++++                         ++|.|+|++|++++|+++.+|+.+|+++
T Consensus       158 ~~i~~~~~-------------------------~~i~g~g~~g~~aiq~a~~~g~~~iiaV  193 (194)
T d1f8fa1         158 KDFPFDQL-------------------------VKFYAFDEINQAAIDSRKGITLKPIIKI  193 (194)
T ss_dssp             TTCCGGGG-------------------------EEEEEGGGHHHHHHHHHHTSCSEEEEEC
T ss_pred             CCCCcccE-------------------------EEEeCcHHHHHHHHHHHHHcCCCEEEEe
Confidence            99886543                         4456889999999999999999777765

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=100.00  E-value=1.1e-36  Score=245.89  Aligned_cols=192  Identities=48%  Similarity=0.833  Sum_probs=164.2

Q ss_pred             CcccceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCc
Q 025895            5 GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTE   84 (246)
Q Consensus         5 ~~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~   84 (246)
                      .+..||||++++++++||+++|+|.|+|+++|||||+.++|||++|+++++|.++. .+|.++|||++|+|+++|+++.+
T Consensus         4 ~~~~~~KAav~~~~g~~l~i~ev~~P~p~~~eVlVkv~a~gICgsDlh~~~G~~~~-~~P~i~GHE~~G~Vv~~G~~v~~   82 (198)
T d1p0fa1           4 GKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPS-KFPVILGHEAVGVVESIGAGVTC   82 (198)
T ss_dssp             TSCEEEEEEEBSSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSCC-CSSBCCCCCEEEEEEEECTTCCS
T ss_pred             CCceEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEEEEecccceeeeecccc-ccccccceeeeeeeeecCccccc
Confidence            45689999999999999999999999999999999999999999999999987654 68999999999999999999999


Q ss_pred             cCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcC
Q 025895           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (246)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip  164 (246)
                      +++||||++.+..+|+.|.+|.++..+.|.+.......|.. .++..++..++..++.....++|+||+.++..+++++|
T Consensus        83 ~~~GdrV~~~~~~~Cg~c~~c~~g~~~~C~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~g~faey~~v~~~~~~kip  161 (198)
T d1p0fa1          83 VKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLM-ADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKID  161 (198)
T ss_dssp             CCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSC-TTSCCSEEETTEEEBCSTTTCCSBSEEEEETTSEEEEC
T ss_pred             CcCCCEEEEEeeccccccccccccccccchhhhcccccccc-CCCceeEeeCCeeccccCCCccceeeEEecHHHEEECC
Confidence            99999999999999999999999999999987765545544 55556667778888887888999999999999999999


Q ss_pred             CCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHH
Q 025895          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGL  208 (246)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~  208 (246)
                      ++++++.++...+.+.          .+.++++|||.|+|++|+
T Consensus       162 ~~~~~~~~~~~~~~~~----------~v~~~~~vlv~G~G~iGl  195 (198)
T d1p0fa1         162 PKINVNFLVSTKLTLD----------QINKAFELLSSGQGVRSI  195 (198)
T ss_dssp             TTSCGGGGEEEEECGG----------GHHHHHHHTTTSSCSEEE
T ss_pred             CCCCHHHHHHhhcchh----------hcCCCCEEEEECCCcceE
Confidence            9999776554433322          223334578888887765

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=100.00  E-value=6.2e-37  Score=243.43  Aligned_cols=170  Identities=24%  Similarity=0.417  Sum_probs=150.8

Q ss_pred             eeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCC---CCCCCcccccceEEEEEEcCCCCCccCC
Q 025895           11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGEGVTEVQP   87 (246)
Q Consensus        11 ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~---~~~~p~v~G~e~vG~V~~vG~~~~~~~~   87 (246)
                      .|++++++++ ++++|+|.|+|+++|||||+++++||++|++++.+...   ..++|.++|||++|+|+++|+++++|++
T Consensus         3 maAVl~g~~~-l~~~e~~~P~~~~~evlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~Vv~vG~~v~~~~~   81 (178)
T d1e3ja1           3 LSAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKHLKK   81 (178)
T ss_dssp             EEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCCSCCT
T ss_pred             eEEEEEcCCc-EEEEEeECCCCCCCEEEEEEEEEcccCchhhhhccCccccccccCCeeeccccceEEEecCcccCCCCC
Confidence            3555677887 99999999999999999999999999999998876432   2367899999999999999999999999


Q ss_pred             CCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCC
Q 025895           88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA  167 (246)
Q Consensus        88 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~  167 (246)
                      ||||++.+...|+.|.+|..++.+.|.+....   |....+|                  +|+||+++|.++++++|+++
T Consensus        82 GdrV~~~~~~~~~~c~~c~~g~~~~c~~~~~~---~~~~~~G------------------~~aey~~v~~~~~~~iP~~~  140 (178)
T d1e3ja1          82 GDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFC---ATPPDDG------------------NLARYYVHAADFCHKLPDNC  140 (178)
T ss_dssp             TCEEEECCEECCSSSHHHHTTCGGGCTTCEET---TBTTBCC------------------SCBSEEEEEGGGEEECCTTC
T ss_pred             CCEEEECcccccCCccccccCCccccccccce---ecccccc------------------ccceeeeecccceeeCCCCC
Confidence            99999999999999999999999999987652   2222344                  99999999999999999999


Q ss_pred             CchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC
Q 025895          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL  203 (246)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga  203 (246)
                      ++++++.+.+++.|+|+++ +.+++++|++|+|+|+
T Consensus       141 ~~~~aa~~~~~~~ta~~a~-~~~~~~~g~~VlVig~  175 (178)
T d1e3ja1         141 NVKQLVTHSFKLEQTVDAF-EAARKKADNTIKVMIS  175 (178)
T ss_dssp             CCGGGEEEEEEGGGHHHHH-HHHHHCCTTCSEEEEE
T ss_pred             CHHHHHHHHhHHHHHHHHH-HHhCCCCCCEEEEEcc
Confidence            9999999999999999985 6789999999999975

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=100.00  E-value=1.6e-35  Score=239.03  Aligned_cols=195  Identities=49%  Similarity=0.771  Sum_probs=166.6

Q ss_pred             CCCCcccceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCC
Q 025895            2 STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG   81 (246)
Q Consensus         2 ~~~~~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~   81 (246)
                      ||....++|||++++++++||+++|+|.|+|+++||||||.++|||++|++.++|.++. .+|.++|||++|+|+++|++
T Consensus         1 ~~~~~~~k~KAavl~~~~~~l~i~ev~~P~p~~~eVlVkV~a~giC~sDl~~~~G~~~~-~~P~i~GHE~~G~Vv~vG~~   79 (198)
T d2jhfa1           1 STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVT-PLPVIAGHEAAGIVESIGEG   79 (198)
T ss_dssp             CCTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSCC-CSSBCCCCSEEEEEEEECTT
T ss_pred             CCCCCceEEEEEEEecCCCCCEEEEEECCCCCCCEEEEEEEEEecccccceeecCCccc-ccceecccceeEEEEecCcc
Confidence            34566799999999999999999999999999999999999999999999999998664 68999999999999999999


Q ss_pred             CCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceE
Q 025895           82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVA  161 (246)
Q Consensus        82 ~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  161 (246)
                      ++++++||||++.+...|+.|.+|..+..+.|.+.+.....|.. .++...+..+|..++..+..|+|+||+++|..+++
T Consensus        80 v~~~~vGdrV~v~~~~~c~~c~~c~~g~~~~C~~~~~~~~~g~~-~~~~~~~~~~g~~~~~~~~~G~fAEy~~v~~~~~~  158 (198)
T d2jhfa1          80 VTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTM-QDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVA  158 (198)
T ss_dssp             CCSCCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSC-TTSCCSEEETTEEEBCSTTTCCSBSEEEEEGGGEE
T ss_pred             ccCcCCCCEEEEeeeecccccccccCCccceeccccccccCccc-cCccccccccCceeccCCCCCcccCeEEeCHHHeE
Confidence            99999999999999999999999999999999998876555554 56666777888888888889999999999999999


Q ss_pred             EcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEE
Q 025895          162 KIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF  201 (246)
Q Consensus       162 ~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~  201 (246)
                      ++|+.++++.++...+++.+...   ....+++|++|+|+
T Consensus       159 ~~p~~~~~e~l~~~~~~~~~v~~---g~~~l~~G~~VaVi  195 (198)
T d2jhfa1         159 KIDAAFALDPLITHVLPFEKINE---GFDLLRSGESIRTI  195 (198)
T ss_dssp             ECCTTSCCGGGEEEEEEGGGHHH---HHHHHHTTCCSEEE
T ss_pred             ECCCCCCHHHHHHHHHHHHhhhh---CCceeeCCCEEEEE
Confidence            99999988766554433333221   11235678888775

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=6.8e-36  Score=236.71  Aligned_cols=172  Identities=30%  Similarity=0.408  Sum_probs=151.9

Q ss_pred             cccceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCCc
Q 025895            6 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTE   84 (246)
Q Consensus         6 ~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~~   84 (246)
                      ++.||||++++++++|++++|+|.|.|++||||||+++++||++|++.+.|.++. ..+|.++|||++|+|+++|+++++
T Consensus         2 ~P~tMkA~v~~~~g~pl~l~evp~P~~~~~evlVkv~a~gic~~D~~~~~G~~~~~~~~P~i~GhE~~G~V~~~G~~v~~   81 (175)
T d1llua1           2 LPQTMKAAVVHAYGAPLRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPFIPGHEGVGYVAAVGSGVTR   81 (175)
T ss_dssp             CCSEEEEEEBCSTTSCCEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCS
T ss_pred             cchhcEEEEEEeCCCCCEEEEeECCCCCCCEEEEEEEEecCcccchhhhccCccccccCCcCCCCcceEEEEEeCCCccc
Confidence            5789999999999999999999999999999999999999999999999998753 478999999999999999999999


Q ss_pred             cCCCCEEEeeC-CCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEc
Q 025895           85 VQPGDHVIPCY-QAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI  163 (246)
Q Consensus        85 ~~~Gd~V~~~~-~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i  163 (246)
                      +++||||.+.+ ...|+.|.+|..+..+.|.+...   .|.. .+|                  +|+||+.+++++++++
T Consensus        82 ~~~GdrV~~~~~~~~~g~~~~~~~g~~~~~~~~~~---~G~~-~~g------------------g~aey~~v~~~~~~~i  139 (175)
T d1llua1          82 VKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQN---TGYS-VNG------------------GYAEYVLADPNYVGIL  139 (175)
T ss_dssp             CCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEE---BTTT-BCC------------------SSBSEEEECTTTSEEC
T ss_pred             cccCCEEEeccccccCCccccccCCcccccccccc---cccc-ccc------------------ccceEEEechHHEEEC
Confidence            99999998765 46899999999999999998765   3433 344                  8999999999999999


Q ss_pred             CCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEE
Q 025895          164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF  201 (246)
Q Consensus       164 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~  201 (246)
                      |++++++.++.+..++.|+++.+ +.. ..+|++|||+
T Consensus       140 Pd~l~~~~a~~~~~~~~t~~~~~-~~g-~~~G~~VLVl  175 (175)
T d1llua1         140 PKNVKATIHPGKLDDINQILDQM-RAG-QIEGRIVLEM  175 (175)
T ss_dssp             CTTCCCCEEEECGGGHHHHHHHH-HTT-CCSSEEEEEC
T ss_pred             CCCCChhHHHHHHhHHHHHHHHH-HhC-CCCCCEEEeC
Confidence            99999988888878888888765 333 4469999984

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=100.00  E-value=1.7e-35  Score=233.55  Aligned_cols=166  Identities=29%  Similarity=0.371  Sum_probs=150.1

Q ss_pred             eeeEeecCCCCeEEEEeecCCC-CCCeEEEEEeeeecchhhhhhhcCCCC---CCCCCcccccceEEEEEEcCCCCCccC
Q 025895           11 KAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGEGVTEVQ   86 (246)
Q Consensus        11 ka~~~~~~~~~~~~~e~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~~~~~---~~~~p~v~G~e~vG~V~~vG~~~~~~~   86 (246)
                      ||+++++.++||+++|+|.|++ .++|||||+.+++||++|++.+.|.+.   .+.+|.++|||++|+|+++|+++++++
T Consensus         1 kA~~~~~~g~pl~i~~v~~P~~~~~~eVlVkv~a~gic~sD~~~~~g~~~~~~~~~~P~v~GhE~~G~V~~vG~~v~~~~   80 (171)
T d1h2ba1           1 KAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEGVEGLE   80 (171)
T ss_dssp             CEEEESSTTSCCEEECCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEECTTCCSCC
T ss_pred             CEEEEEeCCCCCEEEEeeCCCCCCCCEEEEEEEecccceeeehccCCCcccccCCccccccceeeeeeeecccCCCCcCC
Confidence            7999999999999999999986 689999999999999999999988763   346899999999999999999999999


Q ss_pred             CCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCC
Q 025895           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (246)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~  166 (246)
                      +||||++.+...|+.|..|.++..++|.+...   .|.. .+|                  +|+||+.++.++++++|++
T Consensus        81 ~GdrV~~~~~~~cg~~~~c~~g~~~~c~~~~~---~g~~-~~G------------------~~aey~~v~~~~~~~iP~~  138 (171)
T d1h2ba1          81 KGDPVILHPAVTDGTCLACRAGEDMHCENLEF---PGLN-IDG------------------GFAEFMRTSHRSVIKLPKD  138 (171)
T ss_dssp             TTCEEEECSCBCCSCSHHHHTTCGGGCTTCBC---BTTT-BCC------------------SSBSEEEECGGGEEECCTT
T ss_pred             CCCEEEEcCccCCCCccccccccccccccccc---ceee-ccc------------------ccceeeeehhhcceecCCC
Confidence            99999999999999999999999999998765   3433 344                  9999999999999999999


Q ss_pred             CCchhhhhccccchhhhhhhhhhCCCCCCCEEEE
Q 025895          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAV  200 (246)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI  200 (246)
                      ++++.++.+.+++.|+|+++ +..++ .|++|||
T Consensus       139 ~~~e~aa~~~~~~~ta~~al-~~~~~-~G~~VlI  170 (171)
T d1h2ba1         139 VRVEVDIHKLDEINDVLERL-EKGEV-LGRAVLI  170 (171)
T ss_dssp             CCCCEEEEEGGGHHHHHHHH-HTTCC-SSEEEEE
T ss_pred             CCHHHHHHHHhHHHHHHHHH-HhcCC-CCCEEEe
Confidence            99998888888999999987 55777 8999998

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=4.9e-35  Score=233.08  Aligned_cols=175  Identities=23%  Similarity=0.359  Sum_probs=145.8

Q ss_pred             cccceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCC--
Q 025895            6 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVT--   83 (246)
Q Consensus         6 ~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~--   83 (246)
                      |.++|||+++++++++++++|+|.|+|+++||||||.++|||++|++++.|.++..++|.++|||++|+|+++|+++.  
T Consensus         1 m~~k~kA~v~~~~~~pl~i~ev~~P~~~~~evlVkv~a~gIC~sD~~~~~G~~~~~~~P~vlGHE~~G~V~~vG~~v~~~   80 (184)
T d1vj0a1           1 MGLKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIILGHEGAGRVVEVNGEKRDL   80 (184)
T ss_dssp             CCEEEEEEEBCSTTSCCEEEEEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCTTCCSSBCCCCEEEEEEEEESSCCBCT
T ss_pred             CCceEEEEEEecCCCCcEEEEeeCCCCCCCEEEEEEEEECCCCCchhheeccCCccccccccceeeeeeeeEEecccccc
Confidence            348899999999999999999999999999999999999999999999999887778999999999999999999986  


Q ss_pred             ---ccCCCCEEEeeCCCCCCCChhhhCCCCCC-CCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEee-cC
Q 025895           84 ---EVQPGDHVIPCYQAECRECKFCKSGKTNL-CGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH-DV  158 (246)
Q Consensus        84 ---~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~-c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~  158 (246)
                         .+++||+|++.+..+|+.|.+|..++..+ |.+....   |+.           +..-......|+|+||+.++ ..
T Consensus        81 ~~~~~~~Gd~V~~~~~~~Cg~C~~C~~g~~~~~c~~~~~~---G~~-----------~~~~~~~~~~Gg~ae~~~v~~~~  146 (184)
T d1vj0a1          81 NGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVY---GIN-----------RGCSEYPHLRGCYSSHIVLDPET  146 (184)
T ss_dssp             TSCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEET---TTT-----------CCSSSTTCCCSSSBSEEEECTTC
T ss_pred             ccccccceeeeEeccccccccChhHhCccccccCCCceee---ccC-----------CCCCCCCCcceeCcCcEEechhH
Confidence               46899999999999999999999999765 6665542   211           00000012345999999995 57


Q ss_pred             ceEEcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEE
Q 025895          159 SVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF  201 (246)
Q Consensus       159 ~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~  201 (246)
                      +++++|++++++.      ++.+|++++ +...+++|++|||+
T Consensus       147 ~v~~ip~~l~~~~------pl~~A~~a~-~~~~~~~G~~VlI~  182 (184)
T d1vj0a1         147 DVLKVSEKITHRL------PLKEANKAL-ELMESREALKVILY  182 (184)
T ss_dssp             CEEEECTTCCEEE------EGGGHHHHH-HHHHHTSCSCEEEE
T ss_pred             cEEECCCCCCHHH------HHHHHHHHH-HHhCCCcCCEEEEe
Confidence            9999999999753      345677765 67889999999997

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-35  Score=232.75  Aligned_cols=172  Identities=23%  Similarity=0.296  Sum_probs=148.3

Q ss_pred             ccceeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCC---CCCCCcccccceEEEEEEcCCCCC
Q 025895            7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGEGVT   83 (246)
Q Consensus         7 ~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~---~~~~p~v~G~e~vG~V~~vG~~~~   83 (246)
                      +..++|++++++++ ++++|+|.|+|+++||||||++++||++|++.+.+...   ...+|.++|||++|+|+++|++++
T Consensus         5 ~p~~~a~V~~gp~~-l~l~evp~P~p~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~   83 (185)
T d1pl8a1           5 KPNNLSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVK   83 (185)
T ss_dssp             CCCCEEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTCC
T ss_pred             CCCCEEEEEeCCCe-EEEEEeECCCCCCCEEEEEEEEEEeeCchhhhhccccccccCCCCCeeeeeeeeeeEEEecccee
Confidence            45788999999988 99999999999999999999999999999999875432   236789999999999999999999


Q ss_pred             ccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEc
Q 025895           84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI  163 (246)
Q Consensus        84 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i  163 (246)
                      +|++||||++.+...|+.|.+|..|+.+.|.+...   .|....+|                  +|+||++++.++++++
T Consensus        84 ~~~~GdrV~~~~~~~cg~c~~c~~G~~~~c~~~~~---~g~~~~~G------------------~~aey~~~~~~~~~~l  142 (185)
T d1pl8a1          84 HLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFF---CATPPDDG------------------NLCRFYKHNAAFCYKL  142 (185)
T ss_dssp             SCCTTCEEEECSEECSSCCHHHHTTCGGGCTTCEE---TTBTTBCC------------------SCBSEEEEEGGGEEEC
T ss_pred             eecccccceecceeccccchhhccchhchhcccee---eecccccc------------------cceEEEEEchHHEEEC
Confidence            99999999999999999999999999999998765   33322344                  8999999999999999


Q ss_pred             CCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCC
Q 025895          164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLG  204 (246)
Q Consensus       164 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag  204 (246)
                      |+++++++++.++  +.++++++ +..++++|++||| |+|
T Consensus       143 P~~~~~~~aa~~p--l~~a~~a~-~~~~~~~G~~VlI-g~G  179 (185)
T d1pl8a1         143 PDNVKPLVTHRFP--LEKALEAF-ETFKKGLGLKIML-KCD  179 (185)
T ss_dssp             CTTCGGGEEEEEE--GGGHHHHH-HHHHTTCCSEEEE-ECC
T ss_pred             CCCCCHHHHHHHH--HHHHHHHH-HHhCCCCCCEEEE-EeC
Confidence            9999999987654  45667654 5677899999998 544

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=100.00  E-value=9.9e-36  Score=235.92  Aligned_cols=170  Identities=21%  Similarity=0.192  Sum_probs=140.6

Q ss_pred             eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCCC
Q 025895           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (246)
Q Consensus        10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd   89 (246)
                      |||+++.++++ ++++|+|.|.|+++||+||+++++||++|++.+.+......+|.++|||++|+|+++|+++++|++||
T Consensus         1 MKa~v~~~~~~-l~i~e~p~P~~~~~eVlIkv~a~gic~sD~~~~~~~~~~~~~P~i~GhE~~G~V~~vG~~v~~~~vGd   79 (177)
T d1jqba1           1 MKGFAMLGINK-LGWIEKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGALGDRKNMILGHEAVGEVVEVGSEVKDFKPGD   79 (177)
T ss_dssp             CEEEEEEETTE-EEEEECCCCCCCTTCEEEEEEEECCCHHHHHHHHHCTTCCCSSEECCCCEEEEEEEECTTCCSCCTTC
T ss_pred             CeEEEEEeCCC-eEEEEeeCCCCCCCEEEEEEEEEecCCCcccccccCCCCCCCCccCcceeeEEeeecccccceecCCC
Confidence            89999999999 99999999999999999999999999999988876555567899999999999999999999999999


Q ss_pred             EEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeec--CceEEcCCCC
Q 025895           90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD--VSVAKIDPQA  167 (246)
Q Consensus        90 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~ip~~~  167 (246)
                      ||++.+..+|++|.+|.++..+.|.+.......|.. .+                  |+|+||+++|.  .+++++|+++
T Consensus        80 rV~v~~~~~cg~c~~C~~g~~~~c~~~~~~~~~g~~-~~------------------G~~aEy~~vp~a~~~l~~iP~~~  140 (177)
T d1jqba1          80 RVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNF-KD------------------GVFGEYFHVNDADMNLAILPKDV  140 (177)
T ss_dssp             EEEECSCCCCSSSHHHHTTCGGGTTSTTTTCCBTTT-BC------------------CSSBSSEEESSHHHHCEECCTTS
T ss_pred             cEEEeeeeccccccchhhhhhcccccccccccccCC-CC------------------hhcCeeEEEEhhhCeEEECCCCc
Confidence            999999999999999999999999976543222221 23                  49999999986  4699999999


Q ss_pred             CchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHH
Q 025895          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAV  210 (246)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~a  210 (246)
                      ++++++...   .+++..+        ++.++|+|+|++|+.+
T Consensus       141 ~~~~~~~~~---~~~~~~~--------~~~vlv~g~gp~gl~a  172 (177)
T d1jqba1         141 DLSKLVTHV---YHGFDHI--------EEALLLMKDKPKDLIK  172 (177)
T ss_dssp             CGGGGEEEE---EESGGGH--------HHHHHHHHHCCTTCSE
T ss_pred             chHHHHHHH---HHHHHHh--------cCceEEECCCHHHhhe
Confidence            988765432   2233322        2347777887777654

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6e-34  Score=228.37  Aligned_cols=181  Identities=18%  Similarity=0.244  Sum_probs=151.2

Q ss_pred             CcccceeeeEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCC
Q 025895            5 GQVITCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGV   82 (246)
Q Consensus         5 ~~~~~~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~   82 (246)
                      +.+.||||+++..+++.  +++.+++.++++++|||||++++|||++|++++.+.++...+|.++|||++|+|+++|+++
T Consensus         2 ~~P~~~ka~~~~~~~~~~~~~~~~~~p~p~~~~eVlVkv~a~giC~sDl~~~~g~~~~~~~P~i~GHE~~G~Vv~vG~~v   81 (192)
T d1piwa1           2 SYPEKFEGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPLVVGHEIVGKVVKLGPKS   81 (192)
T ss_dssp             CTTTCEEEEEECCSSSTTSCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTSCCCSSEECCCCEEEEEEEECTTC
T ss_pred             CCCceeEEEEEeCCCcCCcceEeeccCCCCCCCeEEEEEeeeCCCcchHHHHcCCCCCCCCCcCcccccccchhhccccc
Confidence            35789999999887765  6788887677899999999999999999999999988777899999999999999999987


Q ss_pred             -CccCCCCEEEeeCC-CCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCce
Q 025895           83 -TEVQPGDHVIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSV  160 (246)
Q Consensus        83 -~~~~~Gd~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  160 (246)
                       +.+++||||.+.+. ..|+.|.+|..++.+.|.+.........  .+|             ....|+|+||++++++++
T Consensus        82 ~~~~k~GdrV~~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~~~--~~G-------------~~~~Ggfaey~~v~~~~~  146 (192)
T d1piwa1          82 NSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPY--EDG-------------YVSQGGYANYVRVHEHFV  146 (192)
T ss_dssp             CSSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBC--TTS-------------CBCCCSSBSEEEEEGGGE
T ss_pred             ccccCCCCeeeEeeeccCCCCchhhhcCCccccccccccccccc--ccc-------------cccccceeeEEEeehHHe
Confidence             56999999987764 5799999999999999998654311100  111             223459999999999999


Q ss_pred             EEcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEE
Q 025895          161 AKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF  201 (246)
Q Consensus       161 ~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~  201 (246)
                      +++|++++++.|+.+...+.|||+++ +..+++++++|||+
T Consensus       147 ~~iP~~l~~e~Aal~~~~~~ta~~~l-~~~~vk~g~~Vvv~  186 (192)
T d1piwa1         147 VPIPENIWVETLPVGEAGVHEAFERM-EKGDVRYRFTLVGY  186 (192)
T ss_dssp             EECCTTCCEEEEESSHHHHHHHHHHH-HHTCCSSEEEEECC
T ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEE
Confidence            99999999988776655577899976 67999999999985

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=100.00  E-value=3.2e-36  Score=243.37  Aligned_cols=191  Identities=21%  Similarity=0.254  Sum_probs=154.3

Q ss_pred             eeeeEeecCCCCeEEEEeecCCC-------CCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCC
Q 025895           10 CKAAVAWEPNKPLVIEDVQVAPP-------QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGV   82 (246)
Q Consensus        10 ~ka~~~~~~~~~~~~~e~~~p~~-------~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~   82 (246)
                      +||++++++++ ++++|+|.|++       ++|||+||+.+++||++|++++.|.++. .+|.++|||++|+|+++|+++
T Consensus         2 ~kA~v~~~~~~-le~~e~~~P~~~~p~~~p~~~eVlVkv~a~giC~sDl~~~~G~~~~-~~P~v~GHE~~G~Vv~vG~~V   79 (201)
T d1kola1           2 NRGVVYLGSGK-VEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTA-QVGLVLGHEITGEVIEKGRDV   79 (201)
T ss_dssp             EEEEEEEETTE-EEEEEECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSCC-CTTCBCCCCEEEEEEEECTTC
T ss_pred             cEEEEEeCCCc-eEEEEecCCcccCCCCCCCCCEEEEEEEEEEEcchhhhhhcCCccc-ccceeccceeeeeeecccccc
Confidence            69999999998 99999999865       4699999999999999999999987764 689999999999999999999


Q ss_pred             CccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeec--Cce
Q 025895           83 TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD--VSV  160 (246)
Q Consensus        83 ~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~  160 (246)
                      ++|++||||.+.+..+|++|.+|..++.+.|.+.......|.... .           ......|+|+||+++|.  .++
T Consensus        80 ~~~~vGdrV~v~~~~~Cg~C~~C~~g~~~~~~~~~~~~~~~~~g~-~-----------~~~~~~Gg~aeyv~vp~~~~~l  147 (201)
T d1kola1          80 ENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGY-V-----------DMGDWTGGQAEYVLVPYADFNL  147 (201)
T ss_dssp             CSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTC-T-----------TSCCBCCCSBSEEEESSHHHHC
T ss_pred             ccccccceeEEeeeeeccCChhhhCCCcccccccccccccccccc-c-----------CCCccccccccEEEeehHHCeE
Confidence            999999999999999999999999999999987654322222100 0           00122469999999985  379


Q ss_pred             EEcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCC
Q 025895          161 AKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA  219 (246)
Q Consensus       161 ~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~  219 (246)
                      ++|||+.++.+++.+...+.++++++ ...+.+.+    ++|+|++|++++|+||++|+
T Consensus       148 ~~iPd~~~~~~~~~~~~~~~~~~~a~-~~~~~~~g----~~g~G~vG~~~i~~ak~~GA  201 (201)
T d1kola1         148 LKLPDRDKAMEKINIAEVVGVQVISL-DDAPRGYG----EFDAGVPKKFVIDPHKTFSA  201 (201)
T ss_dssp             EECSCHHHHHHTCCHHHHHTEEEECG-GGHHHHHH----HHHHTCSCEEEECTTCSSCC
T ss_pred             EECCCCCChHHHHHHHHHHHHHHHHH-HhCCCCCe----EEeeCHHHHHHHHHHHHcCC
Confidence            99999877666666666777777754 33433333    35889999999999999885

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=2.7e-33  Score=222.01  Aligned_cols=167  Identities=26%  Similarity=0.414  Sum_probs=140.4

Q ss_pred             eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCC--------CCCCCcccccceEEEEEEcCCC
Q 025895           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP--------EGLFPCILGHEAAGIVESVGEG   81 (246)
Q Consensus        10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~--------~~~~p~v~G~e~vG~V~~vG~~   81 (246)
                      |||++++++|+||+++|+|.|+|++|||+||+.+++||++|++++.|.+.        ..++|.++|||++|+|+++|+.
T Consensus         1 MKA~~~~~~G~pl~i~dv~~P~p~~~eVlVkv~a~gic~~D~~~~~G~~~~~~~~~~~~~~~P~v~GhE~~G~V~~~g~~   80 (177)
T d1jvba1           1 MRAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDE   80 (177)
T ss_dssp             CEEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEECTT
T ss_pred             CeEEEEEeCCCCCEEEEeeCCCCCCCEEEEEEEEEecccceeeeecCcccccccccccccCCCccccceEEEEEeeeccC
Confidence            89999999999999999999999999999999999999999999988642        2368999999999999999999


Q ss_pred             CCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCc-e
Q 025895           82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVS-V  160 (246)
Q Consensus        82 ~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~  160 (246)
                      +++|++||||.+.+...|+.|.+|.+++.+.|.+...   .|.. .+|                  +|+||+.+|..+ +
T Consensus        81 v~~~~~GdrV~~~~~~~c~~c~~~~~g~~~~c~~~~~---~g~~-~~G------------------~~aey~~vp~~~~~  138 (177)
T d1jvba1          81 VVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRW---LGIN-FDG------------------AYAEYVIVPHYKYM  138 (177)
T ss_dssp             CCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEE---BTTT-BCC------------------SSBSEEEESCGGGE
T ss_pred             ccccccCceEeeeeccccccccccccccccccCCcce---eeec-ccc------------------ccccEEEEEhHHeE
Confidence            9999999999999999999999999999999998764   3333 344                  999999998655 5


Q ss_pred             EEcCCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEE
Q 025895          161 AKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAV  200 (246)
Q Consensus       161 ~~ip~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI  200 (246)
                      +++|+..+.+.++....++.++++++ ...++ .|++|||
T Consensus       139 ~~~~~~~~~~~a~~~~~~~~~a~~~~-~~~~~-~G~~VlI  176 (177)
T d1jvba1         139 YKLRRVKPMITKTMKLEEANEAIDNL-ENFKA-IGRQVLI  176 (177)
T ss_dssp             EECSSSCCCCEEEEEGGGHHHHHHHH-HTTCC-CSEEEEE
T ss_pred             EECCCCChHHHHHHHHHHHHHHHHHH-Hhhcc-cCCceEC
Confidence            66665555544444455777888865 45555 5889987

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=9.6e-33  Score=217.60  Aligned_cols=168  Identities=30%  Similarity=0.472  Sum_probs=142.6

Q ss_pred             eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCC-CCCCCCcccccceEEEEEEcCCCCCccCCC
Q 025895           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD-PEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (246)
Q Consensus        10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~-~~~~~p~v~G~e~vG~V~~vG~~~~~~~~G   88 (246)
                      |||+++++.++|++++|+|.|+|++||||||+++++||++|++.+.+.. ....+|.++|||++|+|+++|++++++++|
T Consensus         1 MkA~v~~~~g~pl~i~~v~~P~~~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~p~v~GhE~~G~Vv~vG~~v~~~~vG   80 (171)
T d1rjwa1           1 MKAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVG   80 (171)
T ss_dssp             CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCSCCTT
T ss_pred             CeEEEEecCCCCcEEEEeECCCCCCCeEEEEEEEeeccccceeeeecccccccccccccCCEEEEEEEEecccccCceee
Confidence            8999999999999999999999999999999999999999999887654 345789999999999999999999999999


Q ss_pred             CEEEeeCC-CCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCC
Q 025895           89 DHVIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA  167 (246)
Q Consensus        89 d~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~  167 (246)
                      |||.+.+. ..|+.|..|..+..+.|.+...   .|.. .+|                  +|+||+++++++++++|+++
T Consensus        81 drV~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~-~~G------------------~~aey~~v~~~~~~~iP~~~  138 (171)
T d1rjwa1          81 DRVGIPWLYSACGHCDYCLSGQETLCEHQKN---AGYS-VDG------------------GYAEYCRAAADYVVKIPDNT  138 (171)
T ss_dssp             CEEEECSEEECCSCSHHHHTTCGGGCTTCEE---BTTT-BCC------------------SSBSEEEEEGGGCEECCTTC
T ss_pred             eEEeeccccccccccccccCCCccccccccc---ccee-ccC------------------ccccceEecHHHEEECCCCC
Confidence            99987664 5688999999999999988664   3333 344                  99999999999999999999


Q ss_pred             CchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC
Q 025895          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL  203 (246)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga  203 (246)
                      +++.|++ . .+.++++++. ...+ +|++|||+|.
T Consensus       139 ~~e~A~l-~-~~~~~~~~~~-~~~~-~G~tVlViG~  170 (171)
T d1rjwa1         139 IIEVQPL-E-KINEVFDRML-KGQI-NGRVVLTLED  170 (171)
T ss_dssp             CEEEEEG-G-GHHHHHHHHH-TTCC-SSEEEEECCC
T ss_pred             CHHHHHH-H-HHHHHHHHHH-hcCC-CCCEEEEeCC
Confidence            9876653 3 3556666553 3455 4999999984

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.9e-32  Score=216.22  Aligned_cols=160  Identities=26%  Similarity=0.425  Sum_probs=132.5

Q ss_pred             eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCCC
Q 025895           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD   89 (246)
Q Consensus        10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~Gd   89 (246)
                      |||++.+++++||+++|+|.|+|++||||||+.++|||++|++.+.+......+|.++|||++|+|+++|++++++++||
T Consensus         1 m~a~~~~~~~~pl~i~ev~~P~pg~geVlVkv~a~gic~sDl~~~~g~~~~~~~P~i~GhE~~G~V~~vG~~V~~~~vGd   80 (179)
T d1uufa1           1 IKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHEIVGRVVAVGDQVEKYAPGD   80 (179)
T ss_dssp             CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTSCCCSSBCCCCCEEEEEEEECTTCCSCCTTC
T ss_pred             CeEEEEccCCCCCEEEEecCCCCCCCEEEEEEEEECCCCCcceeeeeeeccccccccccccccccchhhccccccCCCCC
Confidence            89999999999999999999999999999999999999999999999887778999999999999999999999999999


Q ss_pred             EEEeeC-CCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCC
Q 025895           90 HVIPCY-QAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP  168 (246)
Q Consensus        90 ~V~~~~-~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~  168 (246)
                      +|.+.+ ...|++|.+|..++.++|.+..... .+.....+             ....|+|+||+.+|+++++++|+...
T Consensus        81 rV~v~~~~~~cg~C~~C~~g~~~~C~~~~~~~-~~~~~~~~-------------~~~~GgfaEy~~v~~~~~~~ip~~~~  146 (179)
T d1uufa1          81 LVGVGCIVDSCKHCEECEDGLENYCDHMTGTY-NSPTPDEP-------------GHTLGGYSQQIVVHERYVLRIRVADI  146 (179)
T ss_dssp             EEEECSEEECCSSSHHHHTTCGGGCTTCEETT-TSBCSSTT-------------SBCCCSSBSEEEEEGGGCEECCCCCE
T ss_pred             EEEEcccccccCccccccCcccccCCCccccc-cccCCCCC-------------cccccccceEEEechHHEEECCCCCc
Confidence            998877 4689999999999999999865321 11110111             12346999999999999999996654


Q ss_pred             chhhhhccccchhhhhhh
Q 025895          169 LDKVCLLGCGVPTGLGAV  186 (246)
Q Consensus       169 ~~~aa~l~~~~~ta~~~l  186 (246)
                      ....+   .++.++++++
T Consensus       147 ~~~~a---~~l~~a~~a~  161 (179)
T d1uufa1         147 EMIRA---DQINEAYERM  161 (179)
T ss_dssp             EEECG---GGHHHHHHHH
T ss_pred             ChhHh---chhHHHHHHH
Confidence            33222   2456677765

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.4e-30  Score=199.55  Aligned_cols=145  Identities=20%  Similarity=0.302  Sum_probs=130.8

Q ss_pred             ceeeeEeecCCCC--eEEE-EeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCCc
Q 025895            9 TCKAAVAWEPNKP--LVIE-DVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTE   84 (246)
Q Consensus         9 ~~ka~~~~~~~~~--~~~~-e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~~   84 (246)
                      .|||+++++.|+|  ++++ |+|.|+|++|||+|||++++||++|.+.+.|.+.. ..+|.++|||++|+|+++|+++++
T Consensus         2 ~MkAv~~~~~G~p~~l~~~~~~~~P~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~i~G~e~~G~V~~vG~~v~~   81 (150)
T d1yb5a1           2 LMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNASA   81 (150)
T ss_dssp             EEEEEEESSCSSGGGEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSBCCCSCEEEEEEEECTTCTT
T ss_pred             ceeEEEEEccCCcceEEEEeecCCCCCCCCeEEEEEEEecCcccchhhhcCCcCccccccccCccceeeeeEeecceeec
Confidence            6899999998877  7774 68999999999999999999999999999987754 468899999999999999999999


Q ss_pred             cCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcC
Q 025895           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (246)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip  164 (246)
                      |++||||+..+.                              .+|                  +|+||+.++.+.++++|
T Consensus        82 ~~vGdrV~~~~~------------------------------~~G------------------~~ae~~~v~~~~~~~iP  113 (150)
T d1yb5a1          82 FKKGDRVFTSST------------------------------ISG------------------GYAEYALAADHTVYKLP  113 (150)
T ss_dssp             CCTTCEEEESCC------------------------------SSC------------------SSBSEEEEEGGGEEECC
T ss_pred             cccCcccccccc------------------------------ccc------------------ccccccccccccccccc
Confidence            999999986532                              233                  99999999999999999


Q ss_pred             CCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEE
Q 025895          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF  201 (246)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~  201 (246)
                      +++++++|+.++++..|+|+++......+.|+++||+
T Consensus       114 ~~ls~~~Aa~~~~~~~ta~~~~~~~g~~~~G~~vliL  150 (150)
T d1yb5a1         114 EKLKPVIGSQYPLEKVAEAHENIIHGSGATGKMILLL  150 (150)
T ss_dssp             TTCCCCEEEEEEGGGHHHHHHHHHHSSCCSSEEEEEC
T ss_pred             CCCCHHHHHHhhhhhhhehhhheEEcCcccCCEEEEC
Confidence            9999999999999999999988888889999999874

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=1.7e-28  Score=188.48  Aligned_cols=141  Identities=22%  Similarity=0.284  Sum_probs=122.5

Q ss_pred             eeeEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCCCCCccCCC
Q 025895           11 KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG   88 (246)
Q Consensus        11 ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~~~~~~~~G   88 (246)
                      +++.|+++|+|  |+++|.|.|+|++|||+||+++++||++|++++.|.++...+|.++|||++|+|+++|+++++|++|
T Consensus         2 ~~i~~~~~G~pe~l~~~e~~~P~p~~~eVlVkv~a~~in~~D~~~~~G~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~vG   81 (147)
T d1qora1           2 TRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKVGSGVKHIKAG   81 (147)
T ss_dssp             EEEEBSSCCSGGGCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCSSSSBCCCSCEEEEEEEECTTCCSCCTT
T ss_pred             eEEEEcccCCCceeEEEEecCCCCCCCEEEEEEEEecccceeeeeecCCCCCCcceeeeccccccceeeeeeeccccccc
Confidence            57889999988  9999999999999999999999999999999999998877899999999999999999999999999


Q ss_pred             CEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCC
Q 025895           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP  168 (246)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~  168 (246)
                      |||+....                              ..                  |+|+||..++.+.++++|++++
T Consensus        82 drV~~~~~------------------------------~~------------------G~~ae~~~v~~~~~~~~P~~~~  113 (147)
T d1qora1          82 DRVVYAQS------------------------------AL------------------GAYSSVHNIIADKAAILPAAIK  113 (147)
T ss_dssp             CEEEESCC------------------------------SS------------------CCSBSEEEEEGGGEEECCTTSC
T ss_pred             ceeeeecc------------------------------cc------------------ccceeEEEEehHHeEEcCcccc
Confidence            99963211                              22                  3899999999999999999998


Q ss_pred             chhhh--hccccchhhhhhhhhhCCCCCCCEEEE
Q 025895          169 LDKVC--LLGCGVPTGLGAVWNTAKVEPGSIVAV  200 (246)
Q Consensus       169 ~~~aa--~l~~~~~ta~~~l~~~~~~~~~~~VlI  200 (246)
                      ++.++  .+++...++++++++ .++++|++|||
T Consensus       114 ~~~a~a~~~~~~~~~~~~~l~~-~~~~~G~~VLI  146 (147)
T d1qora1         114 VDVAEQQKYPLKDAQRAHEILE-SRATQGSSLLI  146 (147)
T ss_dssp             CCCCGGGEEEGGGHHHHHHHHH-TTCCCBCCEEE
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH-hCCCCCCEEEe
Confidence            87554  445566677776654 67899999998

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.95  E-value=2.7e-28  Score=188.35  Aligned_cols=149  Identities=15%  Similarity=0.186  Sum_probs=125.0

Q ss_pred             ccceeeeEeecCCCCe--EEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCC
Q 025895            7 VITCKAAVAWEPNKPL--VIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVT   83 (246)
Q Consensus         7 ~~~~ka~~~~~~~~~~--~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~   83 (246)
                      |.+|||+++.+.++++  +++|+|.|+|++|||||||.+++||++|++.+.+.++. ...|.++|+|++|+|++  ..+.
T Consensus         1 m~~~KA~v~~~~~~~~~~~i~~v~~P~~~~~eVlVkV~a~gin~~D~~~~~g~~~~~~~~p~v~g~e~~G~v~~--~~~~   78 (152)
T d1xa0a1           1 MSAFQAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVS--SQHP   78 (152)
T ss_dssp             CCEEEEEEEEEETTEEEEEEEEEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSSCCSSSBCCCSEEEEEEEE--CCSS
T ss_pred             CCceEEEEEEecCCceEEEEEEccCCCCCCCEEEEEEEEeCCChHHHHHHhhcccccccccceeeeeeeeeeec--cCCC
Confidence            4689999999999874  58899999999999999999999999999988887653 46899999999999999  4456


Q ss_pred             ccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEc
Q 025895           84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI  163 (246)
Q Consensus        84 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i  163 (246)
                      .+++||+|......                        .+.. .+                  |+|+||+.+|.++++++
T Consensus        79 ~~~~g~~v~~~~~~------------------------~~~~-~~------------------G~~aEy~~v~~~~~~~i  115 (152)
T d1xa0a1          79 RFREGDEVIATGYE------------------------IGVT-HF------------------GGYSEYARLHGEWLVPL  115 (152)
T ss_dssp             SCCTTCEEEEESTT------------------------BTTT-BC------------------CSSBSEEEECGGGCEEC
T ss_pred             ccccCCEEEEecCc------------------------cccc-cC------------------CCcceeeeehhhccccC
Confidence            89999999754321                        0101 23                  49999999999999999


Q ss_pred             CCCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEEC
Q 025895          164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFG  202 (246)
Q Consensus       164 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~G  202 (246)
                      |++++. +|+.++++..|++.++....+++ |++|||+|
T Consensus       116 P~~l~~-~aa~l~~a~~ta~~~~~~~~~~~-G~tVL~l~  152 (152)
T d1xa0a1         116 PKGLER-IAQEISLAELPQALKRILRGELR-GRTVVRLA  152 (152)
T ss_dssp             CTTHHH-HEEEEEGGGHHHHHHHHHHTCCC-SEEEEECC
T ss_pred             CCCCCH-HHHHHHHHHHHHHHHHHHhcCCC-CCEEEEcC
Confidence            999984 67888888899888888888876 99999975

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.95  E-value=3.9e-28  Score=182.70  Aligned_cols=130  Identities=18%  Similarity=0.198  Sum_probs=117.1

Q ss_pred             eeeeEeecCCCCeEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCCccCCC
Q 025895           10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQPG   88 (246)
Q Consensus        10 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~~~~~G   88 (246)
                      |||+++++.|++++++|+|.|.|++|||+||+++++||+.|++++.|.+.. ..+|.++|||++|+|           +|
T Consensus         1 MkA~~~~~~G~~l~~~e~~~p~p~~~eVlVkv~a~gin~~D~~~~~G~~~~~~~~P~v~G~E~~G~V-----------vG   69 (131)
T d1iz0a1           1 MKAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVV-----------EG   69 (131)
T ss_dssp             CEEEEECSTTSCEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCCEEEEEE-----------TT
T ss_pred             CcEEEEccCCCCCEEEEccCCCCCCCEEEEEEEEEeccccccccccccccccccceeEeeeeeEEee-----------cc
Confidence            899999999999999999999999999999999999999999999998755 478999999999999           39


Q ss_pred             CEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCCCC
Q 025895           89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP  168 (246)
Q Consensus        89 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~  168 (246)
                      |+|+...                               .+|                  +|+||+.++.+.++++|++++
T Consensus        70 d~V~~~~-------------------------------~~G------------------~~aey~~v~~~~~~~~P~~~~  100 (131)
T d1iz0a1          70 RRYAALV-------------------------------PQG------------------GLAERVAVPKGALLPLPEGRP  100 (131)
T ss_dssp             EEEEEEC-------------------------------SSC------------------CSBSEEEEEGGGCEECCTTCC
T ss_pred             ceEEEEe-------------------------------ccC------------------ccceeeeeCHHHeEEccCCCC
Confidence            9997543                               223                  999999999999999999999


Q ss_pred             chhhhhccccchhhhhhhhhhCCCCCCCEEEEE
Q 025895          169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF  201 (246)
Q Consensus       169 ~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~  201 (246)
                      +++|+.+++++.|||++++++.  +.|++||++
T Consensus       101 ~~~aa~~~~~~~Ta~~al~~~g--~~g~tvl~l  131 (131)
T d1iz0a1         101 VVGPVFPFAEAEAAFRALLDRG--HTGKVVVRL  131 (131)
T ss_dssp             CEEEEEEGGGHHHHHHHTTCTT--CCBEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcc--cCCCEEEEC
Confidence            9999999999999999987766  458888863

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.93  E-value=1.2e-27  Score=188.58  Aligned_cols=157  Identities=20%  Similarity=0.124  Sum_probs=129.7

Q ss_pred             ccceeeeEeecCCCC-----eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC----------CCCCcccccce
Q 025895            7 VITCKAAVAWEPNKP-----LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE----------GLFPCILGHEA   71 (246)
Q Consensus         7 ~~~~ka~~~~~~~~~-----~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~----------~~~p~v~G~e~   71 (246)
                      |.||||+++.+.|+|     ++..|+|.|+|+++||||||++++||++|++.++|.++.          ..+|.++|+|+
T Consensus         1 m~t~kA~v~~~~G~p~~~l~l~~~~~p~p~~~~~eVlVkv~a~~i~~~D~~~~~G~~~~~~~~~~~~~~~~~~~v~G~e~   80 (175)
T d1gu7a1           1 MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEG   80 (175)
T ss_dssp             CEEEEEEEESSCSCHHHHCEEEEEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCC
T ss_pred             CceeEEEEEccCCCcccccEEEEEECCCCCCCcCEEEEEEEEeccCcceeEEEecCcccccccccccCCCCCCccccccc
Confidence            679999999999987     445677788889999999999999999999999876532          14678999999


Q ss_pred             EEEEEEcCCCCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceee
Q 025895           72 AGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQ  151 (246)
Q Consensus        72 vG~V~~vG~~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~  151 (246)
                      +|+|+++|..+..++.||+|.....                              ..                  |+|+|
T Consensus        81 ~g~V~~~~~~~~~~~~g~~v~~~~~------------------------------~~------------------g~~ae  112 (175)
T d1gu7a1          81 LFEVIKVGSNVSSLEAGDWVIPSHV------------------------------NF------------------GTWRT  112 (175)
T ss_dssp             EEEEEEECTTCCSCCTTCEEEESSS------------------------------CC------------------CCSBS
T ss_pred             ccccccccccccccccccceecccc------------------------------cc------------------ccccc
Confidence            9999999999999999999975432                              22                  38999


Q ss_pred             eEEeecCceEEcCCCCCchhhhhccccchhhhhhhhh-hCCCCCCCEEEEEC-C-CHHHHHHHHH
Q 025895          152 YTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN-TAKVEPGSIVAVFG-L-GTVGLAVAEG  213 (246)
Q Consensus       152 ~~~~~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~l~~-~~~~~~~~~VlI~G-a-g~~G~~ai~~  213 (246)
                      |+.+++++++++|++++.+.+  +.+...|+|+++.. ...+++|++|||.| + |++|++++|+
T Consensus       113 y~~v~~~~~~~iP~~~~~~~a--~~~~~~ta~~~l~~~~~~~~~g~~vli~gaa~~gvG~~~iQ~  175 (175)
T d1gu7a1         113 HALGNDDDFIKLPNPAQSKAN--GKPNGLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLITY  175 (175)
T ss_dssp             EEEEEGGGEEEECCHHHHHHT--TCSCCCCCCCCEEEECCSSSCHHHHHHHHHHTGGGSCEEEEC
T ss_pred             eeeehhhhccCCCccchhhhh--ccchHHHHHHHHHHHhcCCCCCCEEEEECccchhhhheEEeC
Confidence            999999999999998764444  44577888887654 46799999999997 4 6799887763

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=4.7e-25  Score=168.78  Aligned_cols=130  Identities=15%  Similarity=0.171  Sum_probs=108.9

Q ss_pred             eeeeEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCCccC
Q 025895           10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ   86 (246)
Q Consensus        10 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~~~~   86 (246)
                      |||+++.+++++  ++++|++.|+|++|||+|||.+++||+.|.....|.++. ..+|.++|+|++|+|+++|..  .++
T Consensus         1 MkA~v~~~~~~~~~l~i~~v~~p~~~~geVlVkV~a~gin~~D~~~~~G~~~~~~~~p~v~G~e~~G~V~~~~~~--~~~   78 (146)
T d1o89a1           1 LQALLLEQQDGKTLASVQTLDESRLPEGDVTVDVHWSSLNYKDALAITGKGKIIRNFPMIPGIDFAGTVRTSEDP--RFH   78 (146)
T ss_dssp             CEEEEEECC---CEEEEEECCGGGSCSCSEEEEEEEEECCHHHHHHHHTCSSCCCSSSBCCCSEEEEEEEEECST--TCC
T ss_pred             CeEEEEEcCCCceEEEEEEcCCCCCCCCEEEEEEeeccCccceeeEEEeecccccccceeccccccccceeeccC--Ccc
Confidence            899999999887  778999999999999999999999999999999988754 468999999999999998764  689


Q ss_pred             CCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcCCC
Q 025895           87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ  166 (246)
Q Consensus        87 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~  166 (246)
                      +||+|......                        .|.. .+                  |+|+||+.+|.+.++++|++
T Consensus        79 ~g~~v~~~~~~------------------------~g~~-~~------------------G~~Aey~~v~~~~vv~lP~~  115 (146)
T d1o89a1          79 AGQEVLLTGWG------------------------VGEN-HW------------------GGLAEQARVKGDWLVAMPQG  115 (146)
T ss_dssp             TTCEEEEECTT------------------------BTTT-BC------------------CSSBSEEEECGGGCEECCTT
T ss_pred             ceeeEEeeccc------------------------ceec-CC------------------CcceeeeeeeeeeEEECCCC
Confidence            99999865321                        1111 23                  49999999999999999999


Q ss_pred             CCchhhhhccccchhhhh
Q 025895          167 APLDKVCLLGCGVPTGLG  184 (246)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~  184 (246)
                      +|+++||.++++..||+.
T Consensus       116 ls~~eAA~l~~a~~tA~~  133 (146)
T d1o89a1         116 QAAKEISLSEAPNFAEAI  133 (146)
T ss_dssp             SCCEEECGGGHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHH
Confidence            999999999887777754

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.92  E-value=1.5e-26  Score=180.28  Aligned_cols=150  Identities=17%  Similarity=0.147  Sum_probs=125.3

Q ss_pred             cceeeeEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCC-CCCCcccccceEEEEEEcCCCCCc
Q 025895            8 ITCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTE   84 (246)
Q Consensus         8 ~~~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~-~~~p~v~G~e~vG~V~~vG~~~~~   84 (246)
                      .+|||+++++++++  +++++++.|++++|||||||+|++||++|++.+.+.++. ..+|.++|+|++|+|++  +...+
T Consensus         2 ~~~ka~~~~~~g~~~~l~~~~v~~p~l~~~eVLVkV~a~gin~~D~~~~~g~~~~~~~~~~~~g~e~~G~v~~--~~~~~   79 (162)
T d1tt7a1           2 TLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVS--SNDPR   79 (162)
T ss_dssp             CEEEEEEECCGGGSCCCEEEEEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTTCSSCSEECCSEEEEEEEE--CSSTT
T ss_pred             CcEEEEEEEecCCCeEEEEEEcCCCCCCCCEEEEEEEEecccchhhheeeecccccccceeeeeeeccccccc--ccccc
Confidence            58999999986666  899999999999999999999999999999999888764 36789999999999998  45568


Q ss_pred             cCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCceEEcC
Q 025895           85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID  164 (246)
Q Consensus        85 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip  164 (246)
                      +++||+|......                        .|.. .+                  |+|+||+.+|++.++++|
T Consensus        80 ~~~g~~v~~~~~~------------------------~g~~-~~------------------G~~aey~~v~~~~l~~iP  116 (162)
T d1tt7a1          80 FAEGDEVIATSYE------------------------LGVS-RD------------------GGLSEYASVPGDWLVPLP  116 (162)
T ss_dssp             CCTTCEEEEESTT------------------------BTTT-BC------------------CSSBSSEEECGGGEEECC
T ss_pred             cccceeeEeeecc------------------------ceec-cc------------------cccceEEEecHHHEEECC
Confidence            9999999865431                        1111 23                  399999999999999999


Q ss_pred             CCCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC
Q 025895          165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL  203 (246)
Q Consensus       165 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga  203 (246)
                      +++|+++|+.+++...|+|.++. ......+++|||.|+
T Consensus       117 ~~ls~~~Aa~~~~~~~ta~~~~~-~~~~~~~~~Vli~ga  154 (162)
T d1tt7a1         117 QNLSLKEAMVDQLLTIVDREVSL-EETPGALKDILQNRI  154 (162)
T ss_dssp             TTCCHHHHHHSCSTTSEEEEECS-TTHHHHHHHTTTTCC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEECC
Confidence            99999999999999999998653 344555677888776

>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.68  E-value=5.9e-16  Score=117.46  Aligned_cols=134  Identities=14%  Similarity=0.144  Sum_probs=100.5

Q ss_pred             ccceeeeEeecC--CCC----eEEEEeecCCCCCCeEEEEEeeeecchhhhhhhcCCCCCCCCCcccccceEEEEEEcCC
Q 025895            7 VITCKAAVAWEP--NKP----LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGE   80 (246)
Q Consensus         7 ~~~~ka~~~~~~--~~~----~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~~~~~~~~~p~v~G~e~vG~V~~vG~   80 (246)
                      |.+.|+|++.+.  |.|    |+++|.+.|+|++||||||+++.++++.........    ....++..+++|+|++  |
T Consensus         1 M~~~k~~vl~~~P~G~P~~~~f~l~e~~ip~~~~gevLvk~~~~svDp~~R~~~~~~----~~g~~~~g~~vg~Vv~--S   74 (147)
T d1v3va1           1 MVKAKSWTLKKHFQGKPTQSDFELKTVELPPLKNGEVLLEALFLSVDPYMRIASKRL----KEGAVMMGQQVARVVE--S   74 (147)
T ss_dssp             CCEEEEEEESSCCCSSCCGGGEEEEEEECCCCCTTCEEEEEEEEECCTHHHHHGGGS----CTTSBCCCCEEEEEEE--E
T ss_pred             CcccEEEEEccCCCCCCcccceEEEEEECCCCCCCEEEEEEEEEeEccccccccccc----ccCCccccceEEEEEE--e
Confidence            467899999875  444    999999999999999999999999998765433221    2234566789999998  6


Q ss_pred             CCCccCCCCEEEeeCCCCCCCChhhhCCCCCCCCCccCCCCCceecCCCccccccCCcceeeccCCcceeeeEEeecCce
Q 025895           81 GVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSV  160 (246)
Q Consensus        81 ~~~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  160 (246)
                      +.++|++||+|...                                  +                  +|+||.+.+...+
T Consensus        75 ~~~~f~~GD~V~g~----------------------------------~------------------gw~ey~v~~~~~l  102 (147)
T d1v3va1          75 KNSAFPAGSIVLAQ----------------------------------S------------------GWTTHFISDGKGL  102 (147)
T ss_dssp             SCTTSCTTCEEEEC----------------------------------C------------------CSBSEEEECSSSC
T ss_pred             CCCcccCCCEEEEc----------------------------------c------------------CCEeEEEecccee
Confidence            66789999999722                                  2                  7999999999999


Q ss_pred             EEcCCCCCc-----hhhhhccccchhh-hhhhhhhCCCCCCCEEEE
Q 025895          161 AKIDPQAPL-----DKVCLLGCGVPTG-LGAVWNTAKVEPGSIVAV  200 (246)
Q Consensus       161 ~~ip~~~~~-----~~aa~l~~~~~ta-~~~l~~~~~~~~~~~VlI  200 (246)
                      .++|++.+.     ...+.+....+|| |..+..  ..+.|++||+
T Consensus       103 ~kv~~~~~~~~~~~~~~~~lG~~Gmtaay~gl~~--~~k~Getvv~  146 (147)
T d1v3va1         103 EKLLTEWPDKKIQYHEHVTKGFENMPAAFIEMLN--GANLGKAVVT  146 (147)
T ss_dssp             EECCTTCCTTSSCCCEEEEECGGGHHHHHHHHHT--TCCSSEEEEE
T ss_pred             eEccccccccccchhhhHhccccchHHHHHHhhC--CCCCCCEEEe
Confidence            999876432     2344566666664 545543  3567999986

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.58  E-value=2.4e-15  Score=117.60  Aligned_cols=77  Identities=55%  Similarity=0.956  Sum_probs=72.9

Q ss_pred             CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCcc
Q 025895          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSSK  243 (246)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~~  243 (246)
                      .+++.|+.++|++.|+|+++.+..++++|++|+|+|+|++|+.++|+++.+|+.+||+++.+++|+++++++||+..
T Consensus         2 ~P~e~aa~l~Ca~~T~~~Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~   78 (176)
T d1d1ta2           2 APPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATEC   78 (176)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEE
T ss_pred             cCHHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEE
Confidence            35889999999999999998888999999999999999999999999999998899999999999999999999954

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.58  E-value=2.5e-15  Score=117.28  Aligned_cols=75  Identities=49%  Similarity=0.806  Sum_probs=71.0

Q ss_pred             chhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCcc
Q 025895          169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSSK  243 (246)
Q Consensus       169 ~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~~  243 (246)
                      +.+|+++.|++.|+|+++.+..++++|++|+|+|+|++|++++|+++++|+.+|++++++++|+++++++|++..
T Consensus         2 P~eaa~lgCa~~Ta~~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~   76 (174)
T d1p0fa2           2 PLESCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATEC   76 (174)
T ss_dssp             CGGGGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEE
T ss_pred             HHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEE
Confidence            467899999999999998889999999999999999999999999999999899999999999999999999943

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.57  E-value=2.1e-15  Score=117.49  Aligned_cols=76  Identities=63%  Similarity=1.030  Sum_probs=71.9

Q ss_pred             CchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCcc
Q 025895          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSSK  243 (246)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~~  243 (246)
                      |+++||.++|++.|+|+++.+..++++|++|||+|+|++|++++|+++.+|+.+|++++++++|+++++++|++..
T Consensus         2 P~e~aa~l~ca~~Tay~al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~   77 (176)
T d2fzwa2           2 PLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATEC   77 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEE
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEE
Confidence            5788999999999999999888999999999999999999999999999999899999999999999999999943

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.57  E-value=3.7e-15  Score=116.34  Aligned_cols=77  Identities=52%  Similarity=0.869  Sum_probs=72.5

Q ss_pred             CchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCccc
Q 025895          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSSKY  244 (246)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~~~  244 (246)
                      ++++||.++|++.|+|+++.+..++++|++|+|+|+|++|++++|+++.+|+++|++++.+++|+++++++|++..+
T Consensus         2 ~Le~aa~l~Ca~~T~~~a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i   78 (174)
T d1e3ia2           2 NLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCL   78 (174)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEE
T ss_pred             CHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCccc
Confidence            46789999999999999988899999999999999999999999999999998999999999999999999998543

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=2.4e-15  Score=117.53  Aligned_cols=75  Identities=20%  Similarity=0.165  Sum_probs=71.3

Q ss_pred             CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      +|+++||+++++..|||+++.+..+++++++|||+|+ |++|++++|+|+..|+ +|++++++++|+++++++|++.
T Consensus         1 isfe~AA~~~~~~~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga-~Vi~~~~s~~k~~~~~~lGa~~   76 (179)
T d1qora2           1 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGAWQ   76 (179)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCC-eEeecccchHHHHHHHhcCCeE
Confidence            5899999999999999999988889999999999977 7899999999999999 9999999999999999999994

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=5e-15  Score=115.36  Aligned_cols=76  Identities=24%  Similarity=0.250  Sum_probs=71.7

Q ss_pred             CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCcc
Q 025895          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSSK  243 (246)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~~  243 (246)
                      +|+++||.+++++.|||+++++..+++++++|||+|+ |++|++++|+|+.+|+ +||+++++++|++.++++|++..
T Consensus         1 ls~~~AA~l~~~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~~~~~~~~~Ga~~v   77 (174)
T d1yb5a2           1 LDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQNGAHEV   77 (174)
T ss_dssp             SCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEE
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccCc-ccccccccccccccccccCcccc
Confidence            5889999999999999999988899999999999997 9999999999999999 89999999999999999999843

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.52  E-value=1.2e-14  Score=112.27  Aligned_cols=75  Identities=25%  Similarity=0.373  Sum_probs=70.3

Q ss_pred             CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCcc
Q 025895          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSSK  243 (246)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~~  243 (246)
                      ++++++|.++|++.|+|+++ +..+++++++|+|+|+|++|++++|++|.+|+ +|++++++++|++.++++|++..
T Consensus         1 v~f~~aA~l~ca~~Ta~~al-~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~-~Vi~~~~~~~~~~~a~~~Ga~~~   75 (166)
T d1llua2           1 VEFAEIAPILCAGVTVYKGL-KQTNARPGQWVAISGIGGLGHVAVQYARAMGL-HVAAIDIDDAKLELARKLGASLT   75 (166)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEE
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEeeccccHHHHHHHHHHcCC-ccceecchhhHHHhhhccCcccc
Confidence            57899999999999999987 56899999999999999999999999999998 99999999999999999999844

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.51  E-value=1.2e-14  Score=113.38  Aligned_cols=76  Identities=32%  Similarity=0.481  Sum_probs=71.1

Q ss_pred             CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCcc
Q 025895          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSSK  243 (246)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~~  243 (246)
                      +|+++|+.+++++.|+|+++ +.++++++++|+|+|+|++|++++|++|.+|+.+|++++.+++|++.++++|++..
T Consensus         1 ip~e~A~~l~~~~~ta~~a~-~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~   76 (174)
T d1jqba2           1 MPLENAVMITDMMTTGFHGA-ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDI   76 (174)
T ss_dssp             SCHHHHHTTTTHHHHHHHHH-HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEE
T ss_pred             CCHHHHHHhhhHHHHHHHHH-HHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCcccc
Confidence            57899999999999999986 67899999999999999999999999999999889999999999999999999843

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=1.1e-14  Score=112.72  Aligned_cols=74  Identities=26%  Similarity=0.286  Sum_probs=68.3

Q ss_pred             CchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCcc
Q 025895          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSSK  243 (246)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~~  243 (246)
                      |.+.||.+.|+..|+|+++ +..+++++++|+|+|+|++|++++|++|.+|+ +||+++++++|++.++++|++..
T Consensus         2 p~e~AApl~cag~Ta~~al-~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~lGa~~~   75 (168)
T d1piwa2           2 PSHLAAPLLCGGLTVYSPL-VRNGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKMGADHY   75 (168)
T ss_dssp             CHHHHGGGGTHHHHHHHHH-HHTTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCSEE
T ss_pred             CHHHHHHHHHHHHHHHHHH-HHhCcCCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhccCCcEE
Confidence            5577889999999999987 56899999999999999999999999999999 89999999999999999999844

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.50  E-value=2.4e-14  Score=111.53  Aligned_cols=76  Identities=53%  Similarity=0.908  Sum_probs=72.2

Q ss_pred             CchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCcc
Q 025895          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSSK  243 (246)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~~  243 (246)
                      |+++||.++|++.|+|+++++..++++|++|||+|+|++|++++++++.+|+.+|++++++++|+++++++|++.+
T Consensus         2 Ple~aa~l~ca~~Tay~al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~   77 (176)
T d2jhfa2           2 PLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATEC   77 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEE
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeE
Confidence            5788999999999999999999999999999999999999999999999998899999999999999999999943

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.49  E-value=3.2e-14  Score=110.64  Aligned_cols=76  Identities=58%  Similarity=1.000  Sum_probs=72.0

Q ss_pred             CchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCcc
Q 025895          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSSK  243 (246)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~~  243 (246)
                      |+++||.++|++.|+|+++++.++++++++|+|+|+|++|+.++++++..|+.+|++++++++|++.++++||+..
T Consensus         2 P~e~aa~l~ca~~Tay~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~   77 (175)
T d1cdoa2           2 PLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDF   77 (175)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEE
T ss_pred             CHHHHHHhhcHHHHHHHHHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEE
Confidence            5788999999999999999888999999999999999999999999999999899999999999999999999944

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=1.2e-14  Score=97.56  Aligned_cols=73  Identities=16%  Similarity=0.127  Sum_probs=66.2

Q ss_pred             CCchhhhhccccchhhhhhhh---hhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCC
Q 025895          167 APLDKVCLLGCGVPTGLGAVW---NTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVS  240 (246)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~l~---~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~  240 (246)
                      +|+++|+.++++..|||.+++   +....+++++|||+|+ |++|.+++|+++.+|+ +|+++.++++|.++++++||
T Consensus         1 ls~~eAa~lg~aGlTA~~al~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~-~Vi~~t~s~~k~~~~~~lGA   77 (77)
T d1o8ca2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLKSLGA   77 (77)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCC-eEEEEECCHHHHHHHHHCCC
Confidence            578999999999999987654   4566789999999987 9999999999999999 89999999999999999996

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.49  E-value=1.3e-14  Score=112.80  Aligned_cols=75  Identities=23%  Similarity=0.280  Sum_probs=69.8

Q ss_pred             CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCcc
Q 025895          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSSK  243 (246)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~~  243 (246)
                      +++++||++++++.|||+++. ..+++++++|||+|+ |++|++++|+||.+|+ +|++++++++|++.++++|++..
T Consensus         1 ls~eeAA~l~~~~~TA~~al~-~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~~~~~~~~~lGa~~~   76 (171)
T d1iz0a2           1 LSPEEAAAFPVSFLTAYLALK-RAQARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLALGAEEA   76 (171)
T ss_dssp             CCHHHHHTSHHHHHHHHHHHH-HTTCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHHTTCSEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHH-HhCCCCCCEEEEEeccccchhhhhhhhccccc-cccccccccccccccccccccee
Confidence            578999999999999999874 589999999999997 9999999999999999 89999999999999999999843

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.47  E-value=4e-14  Score=110.90  Aligned_cols=76  Identities=24%  Similarity=0.250  Sum_probs=70.1

Q ss_pred             CchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCcc
Q 025895          168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSSK  243 (246)
Q Consensus       168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~~  243 (246)
                      +++.+|.+.|+..|||+++.+..++++|++|||+|+|++|++++|+|+++|+++|++++++++|++.++++|++..
T Consensus         2 d~~~~a~~~c~~~ta~~al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~v   77 (182)
T d1vj0a2           2 DLDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLT   77 (182)
T ss_dssp             CHHHHHHHTTHHHHHHHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEE
T ss_pred             cHHHHHHhhcHHHHHHHHHHHHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEE
Confidence            3466888899999999998888899999999999999999999999999999889999999999999999999843

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.47  E-value=6.2e-14  Score=109.11  Aligned_cols=76  Identities=36%  Similarity=0.592  Sum_probs=71.5

Q ss_pred             CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      ++++.|+.++|++.|+|+++++..+++++++|+|+|+|++|++++|+++.+|+++|++++.+++|++.++++|++.
T Consensus         1 vP~e~aapl~ca~~Ta~~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~   76 (174)
T d1f8fa2           1 VPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATH   76 (174)
T ss_dssp             SCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSE
T ss_pred             CCHHHHHHHhhHHHHHHHHHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeE
Confidence            4677899999999999999999999999999999999999999999999999988889999999999999999984

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=7.5e-14  Score=107.98  Aligned_cols=76  Identities=25%  Similarity=0.291  Sum_probs=68.6

Q ss_pred             CCCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCcc
Q 025895          166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSSK  243 (246)
Q Consensus       166 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~~  243 (246)
                      ..+++.+|.+.|+..|+|+++ +..++++|++|+|+|+|++|++++|+||.+|+ ++|+++++++|+++++++|++..
T Consensus         3 ~~~~a~~Apl~Cag~Tay~al-~~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga-~~i~~~~~~~~~~~a~~lGad~~   78 (168)
T d1uufa2           3 QEQLAAVAPLLCAGITTYSPL-RHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKALGADEV   78 (168)
T ss_dssp             GGGHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTCSEE
T ss_pred             cccHHHHHHHHhHHHHHHHHH-HHhCCCCCCEEEEeccchHHHHHHHHhhcccc-cchhhccchhHHHHHhccCCcEE
Confidence            345677888899999999987 67999999999999999999999999999999 78889999999999999999943

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.43  E-value=3.3e-14  Score=110.92  Aligned_cols=76  Identities=16%  Similarity=0.013  Sum_probs=69.5

Q ss_pred             CCchhhhhccccchhhhhh---hhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          167 APLDKVCLLGCGVPTGLGA---VWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~---l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      +|+++||.+++++.|||++   +++....+++++|||+|+ |++|.+++|+|+..|+ +|+++.++++|.++++++|++.
T Consensus         1 lS~~eAAal~~aglTA~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga-~Viat~~s~~k~~~~~~lGa~~   79 (176)
T d1xa0a2           1 LTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVLGAKE   79 (176)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHTTCSE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCC-ceEEecCchHHHHHHHhcccce
Confidence            5889999999999999965   445678899999999987 9999999999999999 9999999999999999999994


Q ss_pred             c
Q 025895          243 K  243 (246)
Q Consensus       243 ~  243 (246)
                      +
T Consensus        80 v   80 (176)
T d1xa0a2          80 V   80 (176)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.42  E-value=1.4e-13  Score=106.02  Aligned_cols=75  Identities=24%  Similarity=0.403  Sum_probs=70.2

Q ss_pred             CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCcc
Q 025895          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSSK  243 (246)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~~  243 (246)
                      +|+++||.+++++.|+|+++ +..+++++++|||.|+|++|++++++++..|+ +|++++++++|++.++++|++..
T Consensus         1 ls~eeAA~l~~~~~Ta~~al-~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~~~~r~~~~k~~Ga~~~   75 (168)
T d1rjwa2           1 LSFEEAAPIFCAGVTTYKAL-KVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADLV   75 (168)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHHTCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSEE
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEeecccchhhhhHHHhcCCC-eEeccCCCHHHhhhhhhcCccee
Confidence            58899999999999999986 56889999999999999999999999999999 89999999999999999999843

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.41  E-value=1e-13  Score=108.31  Aligned_cols=73  Identities=21%  Similarity=0.226  Sum_probs=68.4

Q ss_pred             hhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCcc
Q 025895          170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSSK  243 (246)
Q Consensus       170 ~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~~  243 (246)
                      ++||++++++.|||+++++..++++|++|||+|+ |++|++++|+|+.+|+ ++++++++++|.+.++++|++..
T Consensus         1 eeAA~l~~~~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~-~vi~~~~~~~~~~~l~~~Ga~~v   74 (183)
T d1pqwa_           1 NEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSRLGVEYV   74 (183)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHTTCCSEE
T ss_pred             CchhhhhHHHHHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhccccc-cceeeeccccccccccccccccc
Confidence            4789999999999999999999999999999987 9999999999999999 99999999999999999999943

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.9e-13  Score=104.07  Aligned_cols=76  Identities=22%  Similarity=0.343  Sum_probs=68.3

Q ss_pred             CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCccc
Q 025895          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSSKY  244 (246)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~~~  244 (246)
                      +|+++||.+. ++.++|+++ ++.+++++++|+|+|+|++|++++|+++.+|+.+|++++.+++|+++++++|++..+
T Consensus         1 vS~e~Aal~e-pla~a~~a~-~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~   76 (171)
T d1pl8a2           1 VTFEEGALIE-PLSVGIHAC-RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVL   76 (171)
T ss_dssp             SCHHHHHHHH-HHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEE
T ss_pred             CCHHHHHHHH-HHHHHHHHH-HHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccc
Confidence            4788888664 788899975 678999999999999999999999999999998899999999999999999998543

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.38  E-value=4.1e-13  Score=103.71  Aligned_cols=75  Identities=29%  Similarity=0.453  Sum_probs=67.3

Q ss_pred             CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCccc
Q 025895          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSSKY  244 (246)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~~~  244 (246)
                      +|+++||++. ++.++|+++ ++.+++++++|+|+|+|++|++++|+++.+|+ +|++++++++|+++++++|++..+
T Consensus         1 VS~e~Aal~e-Pla~a~~a~-~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~~~ga~~~~   75 (170)
T d1e3ja2           1 VSLEEGALLE-PLSVGVHAC-RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGADVTL   75 (170)
T ss_dssp             SCHHHHHTHH-HHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEE
T ss_pred             CCHHHHHHHH-HHHHHHHHH-HHhCCCCCCEEEEEcccccchhhHhhHhhhcc-cccccchHHHHHHHHHHcCCcEEE
Confidence            4788888763 778899976 66889999999999999999999999999999 999999999999999999998543

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.36  E-value=7.3e-13  Score=102.32  Aligned_cols=76  Identities=22%  Similarity=0.315  Sum_probs=70.5

Q ss_pred             CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCcc
Q 025895          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSSK  243 (246)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~~  243 (246)
                      +++.+||.++|++.|||+++ +..+++++++|+|+|+ |++|++++|+++.+|+.+|++++.+++|++.++++|++..
T Consensus         1 l~~~eAA~l~c~~~Ta~~al-~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~   77 (170)
T d1jvba2           1 LNAVEAAPLTCSGITTYRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYV   77 (170)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEE
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCcee
Confidence            57889999999999999986 6689999999999996 9999999999999998799999999999999999999843

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.36  E-value=6.3e-13  Score=103.97  Aligned_cols=70  Identities=23%  Similarity=0.183  Sum_probs=65.2

Q ss_pred             hhccccchhhhhhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCcc
Q 025895          173 CLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSSK  243 (246)
Q Consensus       173 a~l~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~~  243 (246)
                      ++++++..|||+++.+..++++|++|||+|+ |.+|++++|+||..|+ +||+++++++|.++++++|++..
T Consensus         8 ~~lg~~glTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~Ga~~v   78 (182)
T d1v3va2           8 GTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQIGFDAA   78 (182)
T ss_dssp             TTTSHHHHHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEE
T ss_pred             HHHhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCC-EEEEeCCCHHHHHHHHhhhhhhh
Confidence            4577889999999999999999999999988 8999999999999999 99999999999999999999943

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.33  E-value=1.2e-12  Score=101.34  Aligned_cols=75  Identities=24%  Similarity=0.286  Sum_probs=68.5

Q ss_pred             chhhhhccccchhhhhhhhhhC-CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCcc
Q 025895          169 LDKVCLLGCGVPTGLGAVWNTA-KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSSK  243 (246)
Q Consensus       169 ~~~aa~l~~~~~ta~~~l~~~~-~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~~  243 (246)
                      +.++|.+++++.|+|+++.+.. .++++++|+|.|+|++|++++|+++.+|+.+|++++++++|++.++++|++..
T Consensus         6 l~eaA~l~~~~~Ta~~al~~~~~~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~   81 (172)
T d1h2ba2           6 LVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHV   81 (172)
T ss_dssp             HHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEE
T ss_pred             HHHHhHHHhHHHHHHHHHHHhhhccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhccccee
Confidence            5678899999999999987655 48999999999999999999999999999899999999999999999999843

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.31  E-value=1.2e-12  Score=103.10  Aligned_cols=76  Identities=13%  Similarity=0.039  Sum_probs=66.2

Q ss_pred             CCchhhhhccccchhhhhhhhhhCCCCCCCEEEEE-CC-CHHHHHHHHHHHHcCCCeEEEEcCCh----hHHHHHhhcCC
Q 025895          167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF-GL-GTVGLAVAEGAKAAGASRVIGIDIDP----KKFDRGMSCVS  240 (246)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~-Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~----~~~~~~~~lg~  240 (246)
                      +|+++||+++++++|||+++.+..++++|++|+|+ |+ |++|++++|+||++|+ +||++.+++    ++.++++++|+
T Consensus         1 ls~~~AA~l~~~~~TA~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga-~vI~~v~~~~~~~~~~~~~~~lGa   79 (189)
T d1gu7a2           1 LTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGA   79 (189)
T ss_dssp             CCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTC
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCC-eEEEEEecccccchHHhhhhhccc
Confidence            58899999999999999999899999999999887 55 9999999999999999 888876553    45667889999


Q ss_pred             Ccc
Q 025895          241 SSK  243 (246)
Q Consensus       241 ~~~  243 (246)
                      +..
T Consensus        80 d~v   82 (189)
T d1gu7a2          80 TQV   82 (189)
T ss_dssp             SEE
T ss_pred             cEE
Confidence            843

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=6.8e-13  Score=103.48  Aligned_cols=75  Identities=17%  Similarity=0.133  Sum_probs=65.5

Q ss_pred             CCchhhhhccccchhhhhhhh---hhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          167 APLDKVCLLGCGVPTGLGAVW---NTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       167 ~~~~~aa~l~~~~~ta~~~l~---~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      +|+.+|+.++++..|||++++   +....+++++|||+|+ |++|++++|+||.+|+ +||++.++++|.+.++++|+|.
T Consensus         1 l~~~~Aa~lg~aGlTA~~a~~~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga-~Via~~~~~~k~~~~~~lGad~   79 (177)
T d1o89a2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLKSLGASR   79 (177)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTEEE
T ss_pred             CCHHHHHHcccHHHHHHHHHHHHHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCC-CeEEEecchhHHHHHHhhcccc
Confidence            578899999999999997653   3344555679999987 9999999999999999 8999999999999999999994

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.28  E-value=3.9e-12  Score=100.63  Aligned_cols=73  Identities=36%  Similarity=0.413  Sum_probs=67.1

Q ss_pred             hhhhhccccchhhhhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCcc
Q 025895          170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSSK  243 (246)
Q Consensus       170 ~~aa~l~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~~  243 (246)
                      ++.+.+...+.|+|+++ +.+++++|++|||+|+|++|++++++++.+|+.+|++++.+++|++.++++|++..
T Consensus         2 ~d~~~l~d~~~ta~~a~-~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~   74 (195)
T d1kola2           2 RDLTCLSDILPTGYHGA-VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIA   74 (195)
T ss_dssp             HHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEE
T ss_pred             chHHhcccHHHHHHHHH-HHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEE
Confidence            45677788999999986 67999999999999999999999999999999899999999999999999999844

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.19  E-value=8e-12  Score=98.04  Aligned_cols=76  Identities=21%  Similarity=0.155  Sum_probs=62.7

Q ss_pred             CCCchhhhhccccchhhhhhhhhhCCCCCC--CEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHH-HHhhcCCC
Q 025895          166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPG--SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD-RGMSCVSS  241 (246)
Q Consensus       166 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~--~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~-~~~~lg~~  241 (246)
                      ++|+.+.+ ++++..|||+++++..+++++  ++|||+|+ |++|++++|+||.+|+++|++++.++++.. +++++|++
T Consensus         1 ~~~~~~ga-lg~~glTA~~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad   79 (187)
T d1vj1a2           1 HLSYFLGA-IGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFD   79 (187)
T ss_dssp             CGGGGGTT-TSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCS
T ss_pred             CccHHHHH-hhcHHHHHHHHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccce
Confidence            35666654 677899999999999999887  88999987 999999999999999977887777766655 55679999


Q ss_pred             c
Q 025895          242 S  242 (246)
Q Consensus       242 ~  242 (246)
                      .
T Consensus        80 ~   80 (187)
T d1vj1a2          80 A   80 (187)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.09  E-value=2.9e-11  Score=93.11  Aligned_cols=66  Identities=17%  Similarity=-0.004  Sum_probs=56.0

Q ss_pred             cchhhh---hhhhhhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCccc
Q 025895          178 GVPTGL---GAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSSKY  244 (246)
Q Consensus       178 ~~~ta~---~~l~~~~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~~~  244 (246)
                      +..|||   +++.+....+++++|||+|+ |++|++++|+||.+|+ +||++.++++|.++++++|++..+
T Consensus         4 aGlTA~~a~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga-~Viat~~s~~k~~~~~~lGad~vi   73 (167)
T d1tt7a2           4 AGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQLGASEVI   73 (167)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHHTCSEEE
T ss_pred             hHHHHHHHHHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCC-ceEEEecCHHHHHHHHhhcccceE
Confidence            345665   44556666778889999987 9999999999999999 999999999999999999999543

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.59  E-value=5.7e-05  Score=57.53  Aligned_cols=47  Identities=30%  Similarity=0.343  Sum_probs=44.3

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCCc
Q 025895          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSSS  242 (246)
Q Consensus       195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~~  242 (246)
                      ..+|+|+|+|..|+.|+..|+.+|+ .|.++|.+.++++.++++++.+
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~~~~~~l~~l~~~~   75 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLGGKF   75 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTTCEE
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhhcce
Confidence            4689999999999999999999999 9999999999999999999864

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.23  E-value=0.00024  Score=53.20  Aligned_cols=47  Identities=28%  Similarity=0.292  Sum_probs=42.3

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      +..+|+|+|+|..|+.|++.|+.+|+ .|.++|.+.++++.++...+.
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~~~~l~~l~~~~~~   77 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGS   77 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGG
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCcHHHHHHHHHhhcc
Confidence            34789999999999999999999999 999999999999988876544

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=96.96  E-value=0.00092  Score=49.93  Aligned_cols=52  Identities=17%  Similarity=0.114  Sum_probs=44.3

Q ss_pred             hhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       186 l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      +.+.....++++|+|+|+|+.+.+++..++..|++++.++.|+.+|.+.+.+
T Consensus         8 ~l~~~~~~~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~   59 (167)
T d1npya1           8 LIEKYHLNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAA   59 (167)
T ss_dssp             HHHHTTCCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHH
T ss_pred             HHHHcCCCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHH
Confidence            3456666678899999999999999999999999899999999998776543

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.75  E-value=0.0015  Score=49.69  Aligned_cols=45  Identities=22%  Similarity=0.194  Sum_probs=39.1

Q ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       192 ~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      --+++++||+|+ |++|...++.+...|+ +|+.+++++++.+.+.+
T Consensus        20 ~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~   65 (191)
T d1luaa1          20 SVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAAD   65 (191)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHHH
Confidence            346799999998 9999999999999999 99999999998876543

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=96.45  E-value=0.0053  Score=45.63  Aligned_cols=51  Identities=12%  Similarity=0.072  Sum_probs=41.3

Q ss_pred             hhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       186 l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      +.+..-..++++|||+|+|+.+.+++..+..+|+ +|+++.|+.+|.+.+.+
T Consensus         9 l~~~~~~~~~k~vlIlGaGGaarai~~al~~~g~-~i~I~nRt~~ka~~l~~   59 (170)
T d1nyta1           9 LERLSFIRPGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTVSRAEELAK   59 (170)
T ss_dssp             HHHHTCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHH
T ss_pred             HHHcCCCCCCCEEEEECCcHHHHHHHHHhcccce-EEEeccchHHHHHHHHH
Confidence            4333334578899999999999999999999999 79999999988776544

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.32  E-value=0.0028  Score=50.74  Aligned_cols=42  Identities=21%  Similarity=0.245  Sum_probs=37.6

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~  236 (246)
                      +|+++||+|+ +++|.+.+..+...|+ +|+.+++++++++.+.
T Consensus        13 ~GK~alITGassGIG~aiA~~la~~G~-~Vil~~r~~~~l~~~~   55 (269)
T d1xu9a_          13 QGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVV   55 (269)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            5789999998 8999998888888999 9999999999987664

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.0051  Score=48.90  Aligned_cols=42  Identities=24%  Similarity=0.302  Sum_probs=36.9

Q ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       193 ~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      -+++++||+|+ +++|.+.+..+...|+ +|+.+++++++++.+
T Consensus         8 lk~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~   50 (257)
T d1xg5a_           8 WRDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEEL   50 (257)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            35689999998 8999999998889999 999999999987764

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.18  E-value=0.0024  Score=42.65  Aligned_cols=36  Identities=28%  Similarity=0.343  Sum_probs=32.2

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      .+++|+|+|.|..|+.+++++...|+ +|++.|.++.
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~-~v~~~D~~~~   39 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGV-TPRVMDTRMT   39 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTC-CCEEEESSSS
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCC-EEEEeeCCcC
Confidence            46789999999999999999999999 8999988654

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.15  E-value=0.0031  Score=44.70  Aligned_cols=45  Identities=27%  Similarity=0.431  Sum_probs=40.6

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      ++++|.|.|.+|...++.+...|. .|++++.++++.+.+++.|..
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~-~vvvid~d~~~~~~~~~~~~~   45 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYASYATH   45 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHHTTTTCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-eEEEecCcHHHHHHHHHhCCc
Confidence            357888999999999999999999 999999999999999887764

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=96.09  E-value=0.0083  Score=45.03  Aligned_cols=43  Identities=16%  Similarity=0.337  Sum_probs=37.2

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~  236 (246)
                      .+++|+|+|+|+.+.+++..+..+|++.++.+.+++++.+.+.
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~   59 (182)
T d1vi2a1          17 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKAL   59 (182)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHH
Confidence            5689999999999999999999999989999999887665443

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=96.06  E-value=0.006  Score=49.21  Aligned_cols=41  Identities=12%  Similarity=0.130  Sum_probs=36.1

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      +|+++||+|+ +++|.+.+..+...|+ +|+.+++++++++.+
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~~~l~~~   65 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKAT   65 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHH
Confidence            5799999988 8999999999999999 999999999876543

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=95.86  E-value=0.01  Score=45.44  Aligned_cols=48  Identities=31%  Similarity=0.392  Sum_probs=44.2

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      -.|.+|+|.|-|.+|..+++++...|+ +|++++.+.++++....+|++
T Consensus        25 L~gk~v~IqG~G~VG~~~A~~L~~~Ga-kvvv~d~d~~~~~~~~~~g~~   72 (201)
T d1c1da1          25 LDGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTDTERVAHAVALGHT   72 (201)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEecchHHHHHHHHhhccc
Confidence            367899999999999999999999999 999999999999988888876

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=95.84  E-value=0.0085  Score=49.19  Aligned_cols=46  Identities=30%  Similarity=0.302  Sum_probs=38.7

Q ss_pred             CCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895          190 AKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       190 ~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~  236 (246)
                      .-+.+|++|||+|+ |.+|...+..+...|+ +|+++.++.++.+.++
T Consensus         6 ~~~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~-~V~~~vR~~~~~~~~~   52 (342)
T d1y1pa1           6 AVLPEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARSASKLANLQ   52 (342)
T ss_dssp             CSSCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH
T ss_pred             CCCCCcCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeCCchhHHHHH
Confidence            34677999999998 9999999988888899 9999999887766544

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.82  E-value=0.0088  Score=48.57  Aligned_cols=43  Identities=16%  Similarity=0.238  Sum_probs=37.4

Q ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       192 ~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .-+|+++||+|+ +++|.+.++.+...|+ +|+++++++++++.+
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r~~~~l~~~   52 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSA   52 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            346799999988 8999999999999999 999999999887644

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.79  E-value=0.0059  Score=48.47  Aligned_cols=41  Identities=24%  Similarity=0.312  Sum_probs=36.2

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++++.+
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~   51 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHV   51 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            5789999988 8999999999999999 999999999887654

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.74  E-value=0.012  Score=41.64  Aligned_cols=43  Identities=23%  Similarity=0.430  Sum_probs=37.8

Q ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh-cCC
Q 025895          197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS-CVS  240 (246)
Q Consensus       197 ~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~-lg~  240 (246)
                      +|+|.|.|.+|...++.+...|. .|++++.++++.+.+.+ ++.
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~~~~~~   45 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEIDA   45 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCSS
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-CcceecCChhhhhhhhhhhhh
Confidence            58899999999999999999999 99999999999887754 444

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=95.64  E-value=0.018  Score=42.28  Aligned_cols=51  Identities=18%  Similarity=0.119  Sum_probs=42.1

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHH-HHhhcCCC
Q 025895          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD-RGMSCVSS  241 (246)
Q Consensus       191 ~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~-~~~~lg~~  241 (246)
                      .--.+.+|||+|+|.+|...+..+...|+..+.++.++.+|.+ +++++|..
T Consensus        20 ~~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~   71 (159)
T d1gpja2          20 GSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGE   71 (159)
T ss_dssp             SCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCE
T ss_pred             CCcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcc
Confidence            3346689999999999999999999999988999999987765 56666654

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=95.59  E-value=0.0068  Score=48.16  Aligned_cols=40  Identities=28%  Similarity=0.230  Sum_probs=35.0

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR  234 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~  234 (246)
                      .|+++||+|+ +++|.+.++.+...|+ +|+.+++++++++.
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~   48 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVE   48 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHH
Confidence            4689999988 8999999999999999 99999999877653

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=95.58  E-value=0.0066  Score=47.97  Aligned_cols=40  Identities=25%  Similarity=0.266  Sum_probs=33.5

Q ss_pred             CCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          190 AKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       190 ~~~~~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      -.++|+.++||+|+ +++|+..+..+-..|++.|+.+.+++
T Consensus         4 ~~~~p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~   44 (259)
T d2fr1a1           4 DEWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSG   44 (259)
T ss_dssp             CCCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSG
T ss_pred             cccCCcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            46789999999988 99999988888888986678777764

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.53  E-value=0.0095  Score=47.06  Aligned_cols=42  Identities=21%  Similarity=0.219  Sum_probs=35.9

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~  236 (246)
                      +++.+||+|+ +++|.+.++.+...|+ +|+.+++++++++.+.
T Consensus         9 enKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~   51 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVV   51 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHH
Confidence            3678899988 8999999988889999 9999999998876543

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=95.33  E-value=0.021  Score=42.36  Aligned_cols=45  Identities=16%  Similarity=0.107  Sum_probs=36.9

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      ..++++|+|+|+|+.+.+++..+...+ .+|+++.|+.+|.+.+.+
T Consensus        15 ~~~~k~vlIlGaGGaarai~~aL~~~~-~~i~I~nR~~~~a~~l~~   59 (171)
T d1p77a1          15 LRPNQHVLILGAGGATKGVLLPLLQAQ-QNIVLANRTFSKTKELAE   59 (171)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHHTT-CEEEEEESSHHHHHHHHH
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHcccC-ceeeeccchHHHHHHHHH
Confidence            447789999999999999888877655 499999999988775543

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=95.30  E-value=0.012  Score=44.21  Aligned_cols=38  Identities=34%  Similarity=0.369  Sum_probs=33.8

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       191 ~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      .....++|+|+|+|+.|+.|+..+..+|. +|+.++.++
T Consensus        39 ~~~~~k~V~IIGaGPAGL~AA~~la~~G~-~Vtl~E~~~   76 (179)
T d1ps9a3          39 PAVQKKNLAVVGAGPAGLAFAINAAARGH-QVTLFDAHS   76 (179)
T ss_dssp             SCSSCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSS
T ss_pred             CCCCCcEEEEECccHHHHHHHHHHHhhcc-ceEEEeccC
Confidence            34556899999999999999999999999 999998875

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.90  E-value=0.02  Score=39.37  Aligned_cols=34  Identities=29%  Similarity=0.431  Sum_probs=30.7

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      .+|.|+|+|.+|...++.|+.+|+ ++++++.+++
T Consensus        12 ~kigIlGgGQL~rMla~aA~~lG~-~v~v~d~~~~   45 (111)
T d1kjqa2          12 TRVMLLGSGELGKEVAIECQRLGV-EVIAVDRYAD   45 (111)
T ss_dssp             CEEEEESCSHHHHHHHHHHHTTTC-EEEEEESSTT
T ss_pred             CEEEEEeCCHHHHHHHHHHHHCCC-EEEEEcCCCC
Confidence            469999999999999999999999 8999987754

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=94.65  E-value=0.044  Score=37.68  Aligned_cols=44  Identities=23%  Similarity=0.221  Sum_probs=37.0

Q ss_pred             hhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       186 l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      +.+.....++++|+|+|+|.+|+-.+..+...|. .|..+.+.+.
T Consensus        13 ~~~~l~~~~~~~vvVvGgG~ig~E~A~~l~~~g~-~vt~i~~~~~   56 (121)
T d1mo9a2          13 LVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGR-RTVMLVRTEP   56 (121)
T ss_dssp             HHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCT
T ss_pred             HHHHHhhCCCCEEEEECCCHHHHHHHHHHHhcch-hheEeeccch
Confidence            3455667788999999999999999999999999 8888887753

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=94.50  E-value=0.022  Score=45.31  Aligned_cols=38  Identities=24%  Similarity=0.303  Sum_probs=32.6

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       191 ~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      .....++|+|+|+|..|+.++..+...|. +|++++.++
T Consensus        26 ~~~~pkkV~IIGaG~aGLsaA~~L~~~G~-~V~vlE~~~   63 (370)
T d2iida1          26 ATSNPKHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEASE   63 (370)
T ss_dssp             CCSSCCEEEEECCBHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            34555799999999999999998888999 999998765

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.34  E-value=0.032  Score=43.06  Aligned_cols=39  Identities=23%  Similarity=0.219  Sum_probs=34.0

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       191 ~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      ..+..++|+|+|+|+.|+.++..++..|+ +|.+++.+++
T Consensus        45 ~~~~~k~VvIIGaGpAGl~aA~~l~~~G~-~v~l~E~~~~   83 (233)
T d1djqa3          45 QTKNKDSVLIVGAGPSGSEAARVLMESGY-TVHLTDTAEK   83 (233)
T ss_dssp             CCSSCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSS
T ss_pred             cccCCceEEEEcccHHHHHHHHHHHHhcc-ceeeEeeccc
Confidence            34567899999999999999999999999 8999987664

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=94.26  E-value=0.033  Score=44.19  Aligned_cols=39  Identities=21%  Similarity=0.253  Sum_probs=32.0

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCC-hhHHH
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID-PKKFD  233 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~-~~~~~  233 (246)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.++++ +++.+
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~   57 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAE   57 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHH
Confidence            3689999998 8999999999999999 88888766 44443

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.08  E-value=0.022  Score=36.62  Aligned_cols=34  Identities=24%  Similarity=0.440  Sum_probs=30.4

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      ++|.|+|+|.+|...++.++.+|+ ++++++.+++
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~-~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGI-AVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTE-EEEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCC-EEEEEcCCCC
Confidence            478999999999999999999999 8999986654

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.97  E-value=0.056  Score=39.96  Aligned_cols=41  Identities=17%  Similarity=0.145  Sum_probs=32.8

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      -++++|||+|+|+++.+++..+..  ..+|.++.|+.+|.+.+
T Consensus        16 ~~~k~vlIlGaGG~arai~~aL~~--~~~i~I~nR~~~ka~~l   56 (177)
T d1nvta1          16 VKDKNIVIYGAGGAARAVAFELAK--DNNIIIANRTVEKAEAL   56 (177)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHTS--SSEEEEECSSHHHHHHH
T ss_pred             cCCCEEEEECCcHHHHHHHHHHcc--ccceeeehhhhhHHHHH
Confidence            467899999999999987766643  44899999998887654

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=93.95  E-value=0.052  Score=37.39  Aligned_cols=38  Identities=11%  Similarity=0.181  Sum_probs=32.9

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       191 ~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      .++..++|+|+|+|.+|.-.+..+..+|. +|..+.+++
T Consensus        18 ~l~~p~~v~IiGgG~iG~E~A~~l~~~g~-~Vtlv~~~~   55 (117)
T d1onfa2          18 NIKESKKIGIVGSGYIAVELINVIKRLGI-DSYIFARGN   55 (117)
T ss_dssp             TCCCCSEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSS
T ss_pred             ccCCCCEEEEECCchHHHHHHHHHHhccc-cceeeehhc
Confidence            34456899999999999999999999999 899998765

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=93.90  E-value=0.076  Score=34.82  Aligned_cols=45  Identities=18%  Similarity=0.240  Sum_probs=37.3

Q ss_pred             EEEEECCCHHHHHH-HHHHHHcCCCeEEEEcCCh-hHHHHHhhcCCCc
Q 025895          197 IVAVFGLGTVGLAV-AEGAKAAGASRVIGIDIDP-KKFDRGMSCVSSS  242 (246)
Q Consensus       197 ~VlI~Gag~~G~~a-i~~a~~~G~~~vi~~~~~~-~~~~~~~~lg~~~  242 (246)
                      +|-++|.|++|+.+ +++++..|+ .|.+.|..+ +..+.++++|..+
T Consensus         3 ~ihfiGIgG~GMs~LA~~L~~~G~-~VsGSD~~~~~~t~~L~~~Gi~i   49 (89)
T d1j6ua1           3 KIHFVGIGGIGMSAVALHEFSNGN-DVYGSNIEETERTAYLRKLGIPI   49 (89)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEECSSCCHHHHHHHHTTCCE
T ss_pred             EEEEEeECHHHHHHHHHHHHhCCC-eEEEEeCCCChhHHHHHHCCCeE
Confidence            56677999899865 688999999 999999987 4667888999875

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.86  E-value=0.05  Score=37.25  Aligned_cols=35  Identities=17%  Similarity=0.272  Sum_probs=31.4

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      .++++|+|+|.+|+-+++.+..+|. +|..+.+.+.
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~-~Vtlve~~~~   56 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGT-KVTILEGAGE   56 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred             CCeEEEECCCccceeeeeeeccccc-EEEEEEecce
Confidence            4789999999999999999999999 8988877764

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=93.76  E-value=0.065  Score=37.13  Aligned_cols=41  Identities=32%  Similarity=0.347  Sum_probs=33.9

Q ss_pred             hhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       188 ~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      ....-..+++|+|+|+|.+|+-++..+..+|. +|..+.+.+
T Consensus        23 ~~~~~~~~k~vvViGgG~iG~E~A~~l~~~g~-~Vtlie~~~   63 (123)
T d1nhpa2          23 QKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGK-KVTVIDILD   63 (123)
T ss_dssp             HHHTCTTCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             HHhhccCCCEEEEECChHHHHHHHHHhhccce-EEEEEEecC
Confidence            33334556899999999999999999999999 898887765

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=93.69  E-value=0.062  Score=35.73  Aligned_cols=50  Identities=20%  Similarity=0.209  Sum_probs=40.2

Q ss_pred             CCCCCEEEEECCCHHHHHH-HHHHHHcCCCeEEEEcCCh-hHHHHHhhcCCCc
Q 025895          192 VEPGSIVAVFGLGTVGLAV-AEGAKAAGASRVIGIDIDP-KKFDRGMSCVSSS  242 (246)
Q Consensus       192 ~~~~~~VlI~Gag~~G~~a-i~~a~~~G~~~vi~~~~~~-~~~~~~~~lg~~~  242 (246)
                      .+..+++.++|.|++|+.+ +++++..|+ .|.+.|..+ ...+.+++.|..+
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~-~VsGSD~~~~~~~~~L~~~Gi~v   56 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNEGY-QISGSDIADGVVTQRLAQAGAKI   56 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHHTC-EEEEEESCCSHHHHHHHHTTCEE
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhCCC-EEEEEeCCCChhhhHHHHCCCeE
Confidence            4556789999999999887 799999999 999999874 3556677788764

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=93.51  E-value=0.09  Score=40.77  Aligned_cols=48  Identities=23%  Similarity=0.349  Sum_probs=41.1

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh-cCCC
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS-CVSS  241 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~-lg~~  241 (246)
                      -.|.+|+|.|-|.+|..+++++...|+ ++++++.+..+++.+.. .|+.
T Consensus        37 l~g~~v~IqG~GnVG~~~a~~L~~~Ga-kvv~~d~~~~~~~~~~~~~g~~   85 (230)
T d1leha1          37 LEGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDVNKAAVSAAVAEEGAD   85 (230)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCCE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEeecccHHHHHHHHHhcCCc
Confidence            468999999999999999999999999 99999999888876553 4443

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=93.42  E-value=0.071  Score=36.90  Aligned_cols=38  Identities=32%  Similarity=0.588  Sum_probs=33.2

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      ++++++++|+|+|.+|.-.+..++.+|. +|..+++++.
T Consensus        27 ~~~~~~vvIIGgG~iG~E~A~~l~~~g~-~Vtli~~~~~   64 (121)
T d1d7ya2          27 LRPQSRLLIVGGGVIGLELAATARTAGV-HVSLVETQPR   64 (121)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred             hhcCCeEEEECcchhHHHHHHHhhcccc-eEEEEeeccc
Confidence            4567899999999999999999999999 8998887763

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.25  E-value=0.1  Score=35.37  Aligned_cols=35  Identities=23%  Similarity=0.096  Sum_probs=30.0

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      .+++|||+|+|.+|..-++.+...|+ .|++++...
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga-~v~v~~~~~   45 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGA-RLTVNALTF   45 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTB-EEEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeccC
Confidence            35899999999999999999999999 777775544

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.21  E-value=0.13  Score=37.65  Aligned_cols=53  Identities=28%  Similarity=0.371  Sum_probs=41.9

Q ss_pred             hhhhCC-CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcC
Q 025895          186 VWNTAK-VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCV  239 (246)
Q Consensus       186 l~~~~~-~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg  239 (246)
                      +.+..+ .-.|++++|.|-|-+|...++.++.+|+ +|++++..+-+.-.+.--|
T Consensus        14 ~~r~t~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~-~V~v~e~dp~~al~A~~dG   67 (163)
T d1li4a1          14 IKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGA-RVIITEIDPINALQAAMEG   67 (163)
T ss_dssp             HHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTT
T ss_pred             HHHHhCceecCCEEEEeccccccHHHHHHHHhCCC-eeEeeecccchhHHhhcCc
Confidence            334333 4589999999999999999999999999 9999999986644443333

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=93.09  E-value=0.083  Score=36.14  Aligned_cols=34  Identities=24%  Similarity=0.303  Sum_probs=31.0

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      .++|+|+|+|.+|+-+++.++.+|. +|..+.+.+
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~-~Vtlve~~~   54 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGA-KTHLFEMFD   54 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCEEEEECCChhhHHHHHHhhcccc-EEEEEeecc
Confidence            3789999999999999999999999 899998876

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=93.07  E-value=0.05  Score=40.00  Aligned_cols=49  Identities=22%  Similarity=0.337  Sum_probs=39.3

Q ss_pred             hhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhc
Q 025895          187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSC  238 (246)
Q Consensus       187 ~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~l  238 (246)
                      +....+.++.+||..|.| .|..++.+|+ .|+ +|+++|.|++-++.+++.
T Consensus        13 ~~~l~~~~~~rvLd~GCG-~G~~a~~la~-~G~-~V~gvD~S~~~i~~a~~~   61 (201)
T d1pjza_          13 WSSLNVVPGARVLVPLCG-KSQDMSWLSG-QGY-HVVGAELSEAAVERYFTE   61 (201)
T ss_dssp             HHHHCCCTTCEEEETTTC-CSHHHHHHHH-HCC-EEEEEEECHHHHHHHHHH
T ss_pred             HHHcCCCCCCEEEEecCc-CCHHHHHHHH-cCC-ceEeecccHHHHHHHHHH
Confidence            455678899999999874 2467777776 499 999999999999888763

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=92.99  E-value=0.094  Score=36.84  Aligned_cols=38  Identities=29%  Similarity=0.354  Sum_probs=33.5

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      ++.+++|+|+|+|.+|+-++..++.+|. +|..+++.+.
T Consensus        32 ~~~~k~v~VIGgG~iG~E~A~~l~~~g~-~Vtvie~~~~   69 (133)
T d1q1ra2          32 LIADNRLVVIGGGYIGLEVAATAIKANM-HVTLLDTAAR   69 (133)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSS
T ss_pred             hccCCEEEEECCchHHHHHHHHHHhhCc-ceeeeeeccc
Confidence            4567899999999999999999999999 8999987763

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.94  E-value=0.088  Score=36.41  Aligned_cols=34  Identities=21%  Similarity=0.440  Sum_probs=30.9

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      .++++|+|+|.+|+-.++++..+|. +|..+.+.+
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~-~Vtii~~~~   56 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGS-KVTVVEFQP   56 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCc-ceeEEEecc
Confidence            4789999999999999999999999 899887766

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=92.87  E-value=0.09  Score=36.15  Aligned_cols=35  Identities=23%  Similarity=0.293  Sum_probs=30.7

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      ..++++|+|+|.+|+-.++++..+|. +|..+.+++
T Consensus        21 ~p~~i~IiG~G~ig~E~A~~l~~~G~-~Vtiv~~~~   55 (119)
T d3lada2          21 VPGKLGVIGAGVIGLELGSVWARLGA-EVTVLEAMD   55 (119)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             CCCeEEEECCChHHHHHHHHHHHcCC-ceEEEEeec
Confidence            34889999999999999999999999 788887665

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.80  E-value=0.11  Score=39.59  Aligned_cols=51  Identities=20%  Similarity=0.251  Sum_probs=41.8

Q ss_pred             hhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHhh
Q 025895          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       186 l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~-~~vi~~~~~~~~~~~~~~  237 (246)
                      +.+..+++++++||-+|+|. |..++.+++..|. .+|++++.+++..+.+++
T Consensus        67 ~l~~l~l~~g~~VLdiG~Gt-G~~s~~la~~~~~~g~V~~id~~~~~~~~a~~  118 (213)
T d1dl5a1          67 FMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKR  118 (213)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHH
T ss_pred             HHHhhhccccceEEEecCcc-chhHHHHHHHhCCCCcEEEeecchhhHHHhhh
Confidence            45778899999999999865 7888888888763 379999999988777665

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=92.78  E-value=0.12  Score=37.04  Aligned_cols=45  Identities=24%  Similarity=0.188  Sum_probs=34.5

Q ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh-cCCC
Q 025895          197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS-CVSS  241 (246)
Q Consensus       197 ~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~-lg~~  241 (246)
                      +|.++|+|.+|.+.++-+...|..++++.++++++.+.+++ +|..
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~   47 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVE   47 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCE
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhcccc
Confidence            47888999999987774444554499999999999887664 5654

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=92.60  E-value=0.091  Score=35.79  Aligned_cols=34  Identities=24%  Similarity=0.339  Sum_probs=30.8

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      .++++|+|+|.+|+-++..+..+|. +|..+.+.+
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~-~Vtlve~~~   54 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGA-QVSVVEARE   54 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhccc-ceEEEeeec
Confidence            3789999999999999999999999 899998776

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=92.24  E-value=0.11  Score=36.16  Aligned_cols=36  Identities=19%  Similarity=0.305  Sum_probs=31.8

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      +..++++|+|+|.+|+=.+++.+.+|. +|..+.+.+
T Consensus        24 ~~p~~vvIiGgG~IG~E~A~~~~~~G~-~Vtive~~~   59 (125)
T d1ojta2          24 EVPGKLLIIGGGIIGLEMGTVYSTLGS-RLDVVEMMD   59 (125)
T ss_dssp             CCCSEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             ccCCeEEEECCCHHHHHHHHHhhcCCC-EEEEEEeec
Confidence            345899999999999999999999999 898887766

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.23  E-value=0.12  Score=35.72  Aligned_cols=33  Identities=15%  Similarity=0.152  Sum_probs=30.7

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      ++++|+|+|.+|+-.+..++.+|. +|..+.+++
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~-~Vtlv~~~~   55 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGS-KTSLMIRHD   55 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCc-EEEEEeecc
Confidence            789999999999999999999999 899998875

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=91.92  E-value=0.086  Score=36.49  Aligned_cols=36  Identities=19%  Similarity=0.303  Sum_probs=32.2

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      ..++++|+|+|.+|+-.+++...+|. +|.++.+++.
T Consensus        24 ~p~~~viiG~G~iglE~A~~~~~~G~-~Vtvi~~~~~   59 (123)
T d1dxla2          24 IPKKLVVIGAGYIGLEMGSVWGRIGS-EVTVVEFASE   59 (123)
T ss_dssp             CCSEEEESCCSHHHHHHHHHHHHHTC-EEEEECSSSS
T ss_pred             cCCeEEEEccchHHHHHHHHHHhcCC-eEEEEEEccc
Confidence            34799999999999999999999999 8999988774

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.54  E-value=0.12  Score=35.59  Aligned_cols=33  Identities=21%  Similarity=0.079  Sum_probs=28.8

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      .++++|+|+|.+|+-.++.++.+|. +|..+.++
T Consensus        20 P~~vvIIGgG~iG~E~A~~l~~lG~-~Vtii~~~   52 (122)
T d1h6va2          20 PGKTLVVGASYVALECAGFLAGIGL-DVTVMVRS   52 (122)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             CCeEEEECCCccHHHHHHHHhhcCC-eEEEEEec
Confidence            3689999999999999999999999 77777665

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=91.51  E-value=0.099  Score=39.51  Aligned_cols=36  Identities=33%  Similarity=0.421  Sum_probs=32.4

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      .+++|.|+|.|.+|...++.++..|+ +|+++++...
T Consensus        44 ~~ktvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~~   79 (199)
T d1dxya1          44 GQQTVGVMGTGHIGQVAIKLFKGFGA-KVIAYDPYPM   79 (199)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             cceeeeeeecccccccccccccccce-eeeccCCccc
Confidence            46799999999999999999999999 9999987653

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=91.48  E-value=0.16  Score=38.21  Aligned_cols=37  Identities=30%  Similarity=0.414  Sum_probs=33.0

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~  231 (246)
                      .|++|.|+|-|.+|...++.++..|+ +|++.+.....
T Consensus        42 ~gk~vgIiG~G~IG~~va~~l~~fg~-~V~~~d~~~~~   78 (197)
T d1j4aa1          42 RDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDIFRNP   78 (197)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCH
T ss_pred             cCCeEEEecccccchhHHHhHhhhcc-cccccCccccc
Confidence            47899999999999999999999999 99999876543

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=91.17  E-value=0.14  Score=37.99  Aligned_cols=36  Identities=44%  Similarity=0.637  Sum_probs=32.9

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      .+++|.|+|.|.+|...+++++.+|+ +|++.+++..
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~~~g~-~v~~~d~~~~   76 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRTPK   76 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             cCceEEEeccccccccceeeeecccc-cccccccccc
Confidence            57899999999999999999999999 9999988753

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.10  E-value=0.19  Score=36.16  Aligned_cols=37  Identities=27%  Similarity=0.271  Sum_probs=31.5

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      .-+++|+|+|+|.+|.-++..+...|++.|+++.+.+
T Consensus        43 ~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          43 SIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             cCCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            3467899999999999999999999997888886654

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.07  E-value=0.19  Score=40.07  Aligned_cols=50  Identities=14%  Similarity=0.298  Sum_probs=41.4

Q ss_pred             hhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       186 l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      +.+..++++|++||=+|.| .|..++.+|+..|+ +|++++.+++..+.+++
T Consensus        54 ~~~~l~l~~G~~VLDiGCG-~G~~a~~~a~~~g~-~v~git~s~~Q~~~a~~  103 (285)
T d1kpga_          54 ALGKLGLQPGMTLLDVGCG-WGATMMRAVEKYDV-NVVGLTLSKNQANHVQQ  103 (285)
T ss_dssp             HHTTTTCCTTCEEEEETCT-TSHHHHHHHHHHCC-EEEEEESCHHHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEecCc-chHHHHHHHhcCCc-ceEEEeccHHHHHHHHH
Confidence            5678899999999999874 34667788888999 99999999988776654

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.06  E-value=0.1  Score=37.24  Aligned_cols=32  Identities=19%  Similarity=0.280  Sum_probs=28.8

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEc
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID  226 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~  226 (246)
                      .+++|||+|+|.+|.--+..+...|+ +|++++
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~GA-~VtVva   43 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVS   43 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEe
Confidence            46899999999999999999999999 888884

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.02  E-value=0.13  Score=39.35  Aligned_cols=49  Identities=20%  Similarity=0.257  Sum_probs=38.1

Q ss_pred             hhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       186 l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~  236 (246)
                      +.+..+++++++||.+|+| .|..++.+++..|. +|++++..++-.+.++
T Consensus        70 ml~~L~l~~g~~VLeIGsG-sGY~taila~l~g~-~V~~ie~~~~l~~~a~  118 (215)
T d1jg1a_          70 MLEIANLKPGMNILEVGTG-SGWNAALISEIVKT-DVYTIERIPELVEFAK  118 (215)
T ss_dssp             HHHHHTCCTTCCEEEECCT-TSHHHHHHHHHHCS-CEEEEESCHHHHHHHH
T ss_pred             HHHhhccCccceEEEecCC-CChhHHHHHHhhCc-eeEEEeccHHHHHHHH
Confidence            4577889999999999874 36777788887785 7999999987555443

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=90.99  E-value=0.22  Score=35.84  Aligned_cols=41  Identities=17%  Similarity=0.139  Sum_probs=33.4

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD  233 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~  233 (246)
                      ++..+|.|+|+|.+|...+.++...+..+++.+|.++++.+
T Consensus         5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~   45 (154)
T d1pzga1           5 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPE   45 (154)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHH
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccch
Confidence            44578999999999988888878888778999998876543

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=90.48  E-value=0.19  Score=34.50  Aligned_cols=36  Identities=25%  Similarity=0.265  Sum_probs=31.5

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      .+++++|+|+|.+|+-.+..+..+|. +|..+.+++.
T Consensus        31 ~~~~vvIiGgG~iG~E~A~~l~~~g~-~Vtlv~~~~~   66 (122)
T d1xhca2          31 NSGEAIIIGGGFIGLELAGNLAEAGY-HVKLIHRGAM   66 (122)
T ss_dssp             HHSEEEEEECSHHHHHHHHHHHHTTC-EEEEECSSSC
T ss_pred             cCCcEEEECCcHHHHHHHHHhhcccc-eEEEEecccc
Confidence            34789999999999999999999999 8998987763

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=90.45  E-value=0.2  Score=35.59  Aligned_cols=45  Identities=16%  Similarity=0.213  Sum_probs=37.6

Q ss_pred             CEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhcCCC
Q 025895          196 SIVAVFG-LGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSCVSS  241 (246)
Q Consensus       196 ~~VlI~G-ag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~lg~~  241 (246)
                      ++|.|+| .|.+|...+..++..|+ .|.+.+++++........+++
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~-~V~~~d~~~~~~~~~~~~~~~   55 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGY-PISILDREDWAVAESILANAD   55 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTTCGGGHHHHHTTCS
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCC-CcEecccccccccchhhhhcc
Confidence            5799999 69999999999999999 999999988776665555555

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=90.11  E-value=0.19  Score=37.69  Aligned_cols=37  Identities=41%  Similarity=0.420  Sum_probs=32.9

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      -.|++|.|+|.|.+|...++.++..|+ +|++.++...
T Consensus        47 L~gktvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~~   83 (193)
T d1mx3a1          47 IRGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDPYLS   83 (193)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSC
T ss_pred             eeCceEEEeccccccccceeeeecccc-ceeeccCccc
Confidence            357899999999999999999999999 9999987643

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=89.93  E-value=0.32  Score=37.28  Aligned_cols=50  Identities=20%  Similarity=0.355  Sum_probs=40.2

Q ss_pred             hhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhc
Q 025895          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSC  238 (246)
Q Consensus       186 l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~l  238 (246)
                      +.+...++++++||-+|.| .|..++.+++.. . +|++++.+++..+.+++.
T Consensus        62 ml~~L~l~~g~~VLdIG~G-sGy~ta~La~l~-~-~V~aiE~~~~~~~~A~~~  111 (224)
T d1vbfa_          62 MLDELDLHKGQKVLEIGTG-IGYYTALIAEIV-D-KVVSVEINEKMYNYASKL  111 (224)
T ss_dssp             HHHHTTCCTTCEEEEECCT-TSHHHHHHHHHS-S-EEEEEESCHHHHHHHHHH
T ss_pred             HHHHhhhcccceEEEecCC-CCHHHHHHHHHh-c-ccccccccHHHHHHHHHH
Confidence            4567889999999999886 467777788764 4 899999999988877764

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=89.48  E-value=0.23  Score=38.62  Aligned_cols=35  Identities=34%  Similarity=0.383  Sum_probs=31.2

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      -.|.+|+|.|-|.+|..+++++..+|+ +|++++.+
T Consensus        29 l~g~~v~IqGfGnVG~~~a~~L~~~Ga-kvv~vsD~   63 (242)
T d1v9la1          29 IEGKTVAIQGMGNVGRWTAYWLEKMGA-KVIAVSDI   63 (242)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEEECS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEeecc
Confidence            468999999999999999999999999 88887643

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.37  E-value=0.38  Score=38.56  Aligned_cols=32  Identities=22%  Similarity=0.391  Sum_probs=28.7

Q ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcC
Q 025895          195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI  227 (246)
Q Consensus       195 ~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~  227 (246)
                      .+++||+|+ |.+|...+..+...|. +|+++++
T Consensus        16 ~k~iLVTG~tGfIGs~lv~~L~~~g~-~V~~~d~   48 (341)
T d1sb8a_          16 PKVWLITGVAGFIGSNLLETLLKLDQ-KVVGLDN   48 (341)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEEC
Confidence            378999998 9999999999999999 9999975

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=89.30  E-value=0.34  Score=37.82  Aligned_cols=51  Identities=16%  Similarity=0.251  Sum_probs=38.0

Q ss_pred             hhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHhh
Q 025895          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       186 l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~-~~vi~~~~~~~~~~~~~~  237 (246)
                      +....++++|++||=.|+|. |.++..+|++.|. .+|++++.+++..+.+++
T Consensus        77 Ii~~l~i~pG~rVLEiG~Gs-G~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~  128 (250)
T d1yb2a1          77 IIMRCGLRPGMDILEVGVGS-GNMSSYILYALNGKGTLTVVERDEDNLKKAMD  128 (250)
T ss_dssp             ----CCCCTTCEEEEECCTT-SHHHHHHHHHHTTSSEEEEECSCHHHHHHHHH
T ss_pred             HHHHcCCCCcCEEEEeeeeC-cHHHHHHHHHhCCCcEEEEEECCHHHHHHHHH
Confidence            34678899999999888753 5667778887653 389999999998887765

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=89.17  E-value=0.44  Score=34.04  Aligned_cols=39  Identities=21%  Similarity=0.225  Sum_probs=32.9

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHH
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF  232 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~  232 (246)
                      |..+|.|+|+|.+|...+.++...+..+++.+|.++++.
T Consensus         2 p~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~   40 (150)
T d1t2da1           2 PKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMP   40 (150)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcc
Confidence            446899999999999888888888988999999887653

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.13  E-value=0.26  Score=39.48  Aligned_cols=44  Identities=27%  Similarity=0.453  Sum_probs=32.5

Q ss_pred             hhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 025895          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (246)
Q Consensus       186 l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~  231 (246)
                      +.+.....++++||-+|.| .|.+++.+|+ .|+++|++++.++.-
T Consensus        27 i~~~~~~~~~~~VLDiGcG-~G~lsl~aa~-~Ga~~V~aid~s~~~   70 (311)
T d2fyta1          27 IYQNPHIFKDKVVLDVGCG-TGILSMFAAK-AGAKKVLGVDQSEIL   70 (311)
T ss_dssp             HHHCGGGTTTCEEEEETCT-TSHHHHHHHH-TTCSEEEEEESSTHH
T ss_pred             HHhccccCCcCEEEEECCC-CCHHHHHHHH-cCCCEEEEEeCHHHH
Confidence            4444456788999999886 5666666666 477799999999853

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.03  E-value=0.4  Score=35.47  Aligned_cols=37  Identities=38%  Similarity=0.447  Sum_probs=33.1

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~  231 (246)
                      .+.++.|+|.|.+|...++.++..|+ +|++.++...+
T Consensus        43 ~~k~vgiiG~G~IG~~va~~~~~fg~-~v~~~d~~~~~   79 (184)
T d1ygya1          43 FGKTVGVVGLGRIGQLVAQRIAAFGA-YVVAYDPYVSP   79 (184)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSCH
T ss_pred             cceeeeeccccchhHHHHHHhhhccc-eEEeecCCCCh
Confidence            56899999999999999999999999 99999876544

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=88.94  E-value=0.52  Score=34.17  Aligned_cols=43  Identities=37%  Similarity=0.495  Sum_probs=38.0

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 025895          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRG  235 (246)
Q Consensus       192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~  235 (246)
                      .-.|++++|.|=|-+|...++-++.+|+ +|++++..+-+.-.+
T Consensus        20 ~laGk~vvV~GYG~vGrG~A~~~rg~Ga-~V~V~E~DPi~alqA   62 (163)
T d1v8ba1          20 LISGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDPICAIQA   62 (163)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHHHHHHH
T ss_pred             eecCCEEEEecccccchhHHHHHHhCCC-EEEEEecCchhhHHH
Confidence            4688999999999999999999999999 999999998664443

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=88.10  E-value=0.28  Score=36.41  Aligned_cols=38  Identities=18%  Similarity=0.100  Sum_probs=33.3

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHH
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF  232 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~  232 (246)
                      .+.+|.|+|.|.+|...++.++..|. +|+..++.....
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~   80 (188)
T d2naca1          43 EAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHRLPE   80 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCCCH
T ss_pred             cccceeeccccccchhhhhhhhccCc-eEEEEeeccccc
Confidence            57899999999999999999999999 999998765433

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=87.71  E-value=0.28  Score=38.77  Aligned_cols=32  Identities=41%  Similarity=0.585  Sum_probs=27.9

Q ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       197 ~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      .|||+|+|..|+.++..+...|+ +|++++..+
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~-~V~lvEK~~   49 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGA-KVILIEKEP   49 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence            48899999999999999999999 899997654

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=87.55  E-value=0.48  Score=35.25  Aligned_cols=36  Identities=19%  Similarity=0.390  Sum_probs=32.3

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      .++++.|+|.|.+|...++.++..|+ ++++.+....
T Consensus        46 ~g~tvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~~   81 (191)
T d1gdha1          46 DNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHRA   81 (191)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCC
T ss_pred             cccceEEeecccchHHHHHHHHhhcc-cccccccccc
Confidence            47899999999999999999999999 8999987544

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=87.43  E-value=0.38  Score=37.06  Aligned_cols=35  Identities=31%  Similarity=0.468  Sum_probs=31.1

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      ..+|+|+|+|++|..++..+-.+|.++++.+|...
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   64 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   64 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence            36899999999999999999999999999997543

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.33  E-value=0.33  Score=36.91  Aligned_cols=36  Identities=22%  Similarity=0.248  Sum_probs=29.9

Q ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCC-CeEEEEcCChh
Q 025895          195 GSIVAVFGL-GTVGLAVAEGAKAAGA-SRVIGIDIDPK  230 (246)
Q Consensus       195 ~~~VlI~Ga-g~~G~~ai~~a~~~G~-~~vi~~~~~~~  230 (246)
                      +++|||+|+ |.+|...++.+...|. .+|+++.|++.
T Consensus        14 ~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~   51 (232)
T d2bkaa1          14 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKL   51 (232)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChh
Confidence            368999998 9999999988887774 58999988654

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.14  E-value=0.39  Score=38.37  Aligned_cols=33  Identities=27%  Similarity=0.377  Sum_probs=30.1

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI  227 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~  227 (246)
                      .+.+|+|.|-|.+|..+++.+...|+ +|++++.
T Consensus        35 ~gktvaIqGfGnVG~~~A~~L~e~Ga-kvv~vsD   67 (293)
T d1hwxa1          35 GDKTFAVQGFGNVGLHSMRYLHRFGA-KCVAVGE   67 (293)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEEc
Confidence            57899999999999999999999999 8888863

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=87.10  E-value=0.72  Score=36.13  Aligned_cols=51  Identities=22%  Similarity=0.239  Sum_probs=41.4

Q ss_pred             hhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHhh
Q 025895          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       186 l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~-~~vi~~~~~~~~~~~~~~  237 (246)
                      +....++++|++||=.|.|. |.+++.+|+..|. .+|++++.+++..+.+++
T Consensus        95 Ii~~l~i~pG~~VLDiG~Gs-G~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~  146 (266)
T d1o54a_          95 IAMMLDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAES  146 (266)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHH
T ss_pred             HHHhhCCCCCCEEEECCCCC-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Confidence            56788999999999888754 6777788888753 389999999998887765

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.03  E-value=0.71  Score=32.73  Aligned_cols=40  Identities=28%  Similarity=0.366  Sum_probs=32.3

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCChhHH
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKF  232 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~-~~vi~~~~~~~~~  232 (246)
                      ..+.+|.|+|+|.+|...+..+...+. .+++.+|..+++.
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~   44 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKA   44 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHH
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccc
Confidence            345689999999999988877777774 5799999988773

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.95  E-value=0.65  Score=35.34  Aligned_cols=45  Identities=29%  Similarity=0.400  Sum_probs=35.7

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHh
Q 025895          191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       191 ~~~~~~~VlI~Gag~~G~~ai~~a~~~G~-~~vi~~~~~~~~~~~~~  236 (246)
                      .+++|++||-+|.| .|..++.+|+..|. .+|++++.+++-.+.++
T Consensus        73 ~l~~g~~VLdiG~G-sGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~  118 (224)
T d1i1na_          73 QLHEGAKALDVGSG-SGILTACFARMVGCTGKVIGIDHIKELVDDSV  118 (224)
T ss_dssp             TSCTTCEEEEETCT-TSHHHHHHHHHHCTTCEEEEEESCHHHHHHHH
T ss_pred             ccCCCCeEEEecCC-CCHHHHHHHHHhCCCceEEEEcCCHHHHHHHH
Confidence            68999999999874 36777788887663 48999999998776654

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=86.70  E-value=0.73  Score=32.46  Aligned_cols=36  Identities=17%  Similarity=0.148  Sum_probs=30.9

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 025895          195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK  231 (246)
Q Consensus       195 ~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~  231 (246)
                      .+.++|.|.|.+|...++.++..|. .+++++.++++
T Consensus         3 knHiII~G~g~~g~~l~~~L~~~~~-~v~vId~d~~~   38 (153)
T d1id1a_           3 KDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPED   38 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-CEEEEeccchh
Confidence            3578999999999999999999999 78888877654

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.41  E-value=0.35  Score=36.70  Aligned_cols=47  Identities=19%  Similarity=0.149  Sum_probs=36.9

Q ss_pred             hhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       188 ~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      ......++.+||..|.|. |..+..+|+ .|+ +|+++|.|+.-++.+++
T Consensus        39 ~~l~~~~~~rvLd~GCG~-G~~a~~LA~-~G~-~V~gvD~S~~ai~~a~~   85 (229)
T d2bzga1          39 TFLKGKSGLRVFFPLCGK-AVEMKWFAD-RGH-SVVGVEISELGIQEFFT   85 (229)
T ss_dssp             HHHTTCCSCEEEETTCTT-CTHHHHHHH-TTC-EEEEECSCHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEeCCCC-cHHHHHHHh-CCC-cEEEEeCCHHHHHHHHH
Confidence            445678889999998753 566777775 699 99999999998887765

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=86.09  E-value=0.33  Score=38.71  Aligned_cols=33  Identities=42%  Similarity=0.596  Sum_probs=28.2

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      -.|||+|+|..|+.++..+...|+ +|++++..+
T Consensus        20 ~DVvVIGaG~aGl~AA~~aa~~G~-~V~vlEK~~   52 (317)
T d1qo8a2          20 TQVLVVGAGSAGFNASLAAKKAGA-NVILVDKAP   52 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHTC-CEEEECSSS
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            348899999999999999999999 899997643

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=85.98  E-value=0.44  Score=35.76  Aligned_cols=49  Identities=14%  Similarity=0.110  Sum_probs=38.1

Q ss_pred             hhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       186 l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      +.+..+++++++||=+|.| .|..+..+++. |. +|+++|.+++-++.+++
T Consensus         7 ll~~~~l~~~~rVLDiGcG-~G~~~~~l~~~-~~-~v~gvD~s~~~i~~A~~   55 (231)
T d1vl5a_           7 LMQIAALKGNEEVLDVATG-GGHVANAFAPF-VK-KVVAFDLTEDILKVARA   55 (231)
T ss_dssp             HHHHHTCCSCCEEEEETCT-TCHHHHHHGGG-SS-EEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCcCEEEEeccc-CcHHHHHHHHh-CC-EEEEEECCHHHHhhhhh
Confidence            5677899999999999875 56666666654 66 89999999987776643

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.60  E-value=0.39  Score=38.77  Aligned_cols=35  Identities=23%  Similarity=0.290  Sum_probs=29.8

Q ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       194 ~~~~VlI~Ga-g~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      ..-+|||+|+ |.+|...+..+...|. .|+++++..
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~-~V~~~d~~~   49 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGH-YVIASDWKK   49 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeCCC
Confidence            4567999988 9999999999999998 899987543

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=85.38  E-value=0.99  Score=34.27  Aligned_cols=52  Identities=19%  Similarity=0.297  Sum_probs=40.0

Q ss_pred             hhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          184 GAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       184 ~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      ..+....+++++++||=+|.| .|..+..+++..|+ +|++++.+++-++.+++
T Consensus        23 ~~l~~~~~l~pg~~VLDiGCG-~G~~~~~la~~~~~-~v~GvD~s~~~~~~ar~   74 (245)
T d1nkva_          23 ATLGRVLRMKPGTRILDLGSG-SGEMLCTWARDHGI-TGTGIDMSSLFTAQAKR   74 (245)
T ss_dssp             HHHHHHTCCCTTCEEEEETCT-TCHHHHHHHHHTCC-EEEEEESCHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCEEEEEcCC-CCHHHHHHHHhcCC-EEEEEecccchhhHHHH
Confidence            346678899999999877764 23456678888898 99999999987766554

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=85.34  E-value=0.55  Score=36.69  Aligned_cols=34  Identities=26%  Similarity=0.380  Sum_probs=30.3

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI  227 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~  227 (246)
                      -.+.+|+|.|-|.+|..+++++..+|+ +|++++.
T Consensus        34 l~g~~v~IQGfGnVG~~~a~~L~e~Ga-kvvavsD   67 (255)
T d1bgva1          34 LVGKTVALAGFGNVAWGAAKKLAELGA-KAVTLSG   67 (255)
T ss_dssp             STTCEEEECCSSHHHHHHHHHHHHHTC-EEEEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEec
Confidence            467899999999999999999999999 8887754

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=85.30  E-value=0.91  Score=32.09  Aligned_cols=37  Identities=41%  Similarity=0.582  Sum_probs=30.1

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCChhHH
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKF  232 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~G-~~~vi~~~~~~~~~  232 (246)
                      ++|.|+|+|.+|...+..+...| +.+++.+|.++++.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~   39 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKV   39 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchh
Confidence            57889999999988777777666 46899999988874

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=85.20  E-value=0.8  Score=34.97  Aligned_cols=50  Identities=16%  Similarity=0.232  Sum_probs=38.5

Q ss_pred             hhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhhc
Q 025895          188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMSC  238 (246)
Q Consensus       188 ~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~l  238 (246)
                      +...+++|++||=+|+| .|..+..+++...-..|+++|.+++-++.++++
T Consensus        68 ~~l~ikpG~~VLDlGcG-sG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~  117 (230)
T d1g8sa_          68 KVMPIKRDSKILYLGAS-AGTTPSHVADIADKGIVYAIEYAPRIMRELLDA  117 (230)
T ss_dssp             CCCCCCTTCEEEEESCC-SSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHH
T ss_pred             HhCCCCCCCEEEEeCEE-cCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHH
Confidence            56789999999998874 256666777765445899999999988877664

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=85.20  E-value=0.93  Score=32.05  Aligned_cols=38  Identities=24%  Similarity=0.300  Sum_probs=30.7

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCChhHH
Q 025895          195 GSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKF  232 (246)
Q Consensus       195 ~~~VlI~Gag~~G~~ai~~a~~~G-~~~vi~~~~~~~~~  232 (246)
                      ..+|.|+|+|.+|...+..+...| +.+++.+|..+++.
T Consensus         5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~   43 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRT   43 (146)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchh
Confidence            357999999999998777777766 46899999988764

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=84.93  E-value=0.84  Score=35.55  Aligned_cols=50  Identities=18%  Similarity=0.135  Sum_probs=39.3

Q ss_pred             hhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       186 l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      +.....+.++.+||=+|.| .|..+..+++..|+ +|++++.++..++.+++
T Consensus        59 l~~~~~l~~~~~vLDiGcG-~G~~~~~la~~~~~-~v~gvD~s~~~i~~a~~  108 (282)
T d2o57a1          59 LAMTGVLQRQAKGLDLGAG-YGGAARFLVRKFGV-SIDCLNIAPVQNKRNEE  108 (282)
T ss_dssp             HHHTTCCCTTCEEEEETCT-TSHHHHHHHHHHCC-EEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEeCCC-CcHHHhhhhccCCc-EEEEEeccchhhhhhhc
Confidence            4456788999999988875 45566778887898 99999999987766654

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=84.91  E-value=0.42  Score=38.04  Aligned_cols=32  Identities=44%  Similarity=0.662  Sum_probs=27.8

Q ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       197 ~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      -|+|+|+|..|+.++..+...|+ +|++++..+
T Consensus        25 DVvVIG~G~aGl~aA~~la~~G~-~V~llEk~~   56 (322)
T d1d4ca2          25 DVVIIGSGGAGLAAAVSARDAGA-KVILLEKEP   56 (322)
T ss_dssp             SEEEECSSHHHHHHHHHHHTTTC-CEEEECSSS
T ss_pred             eEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            38899999999999888888999 899997654

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=84.81  E-value=0.59  Score=34.50  Aligned_cols=35  Identities=26%  Similarity=0.394  Sum_probs=31.9

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      .+.+|.|+|.|.+|...++.++..|+ +|+..++..
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~-~v~~~d~~~   77 (188)
T d1sc6a1          43 RGKKLGIIGYGHIGTQLGILAESLGM-YVYFYDIEN   77 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             cceEEEEeecccchhhhhhhcccccc-eEeeccccc
Confidence            56899999999999999999999999 999998754

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=84.69  E-value=0.41  Score=37.34  Aligned_cols=33  Identities=30%  Similarity=0.337  Sum_probs=26.9

Q ss_pred             CEEEEECCCHHHHHHHH-HHHHcCCCeEEEEcCCh
Q 025895          196 SIVAVFGLGTVGLAVAE-GAKAAGASRVIGIDIDP  229 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~-~a~~~G~~~vi~~~~~~  229 (246)
                      ..|+|+|+|+.|+.++. +|+..|. +|.+++..+
T Consensus        34 ~DViVIGaGpaGL~aA~~LA~~~G~-~V~vlE~~~   67 (278)
T d1rp0a1          34 TDVVVVGAGSAGLSAAYEISKNPNV-QVAIIEQSV   67 (278)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTS-CEEEEESSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHccCC-eEEEEecCC
Confidence            44899999999998765 5666799 999998775

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.55  E-value=0.9  Score=36.04  Aligned_cols=50  Identities=18%  Similarity=0.372  Sum_probs=39.7

Q ss_pred             hhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHh
Q 025895          185 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGM  236 (246)
Q Consensus       185 ~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~  236 (246)
                      -+.+..++++|++||=+|.|- |..+..+|+..|+ +|++++.+++..+.++
T Consensus        52 ~~~~~l~l~~G~~VLDiGCG~-G~~~~~~a~~~g~-~v~git~s~~q~~~a~  101 (291)
T d1kpia_          52 LALDKLNLEPGMTLLDIGCGW-GSTMRHAVAEYDV-NVIGLTLSENQYAHDK  101 (291)
T ss_dssp             HHHHTTCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHH
T ss_pred             HHHHhcCCCCCCEEEEecCcc-hHHHHHHHHhcCc-ceeeccchHHHHHHHH
Confidence            356888999999999888742 3356788888899 9999999998766544

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=84.42  E-value=0.83  Score=32.10  Aligned_cols=37  Identities=22%  Similarity=0.229  Sum_probs=29.7

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHH
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF  232 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~  232 (246)
                      .+|.|+|+|.+|...+.++...+..+++.+|..+++.
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~   38 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVP   38 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccc
Confidence            3688889999998877666667776899999887754

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=83.89  E-value=1.1  Score=34.11  Aligned_cols=44  Identities=25%  Similarity=0.273  Sum_probs=34.6

Q ss_pred             hhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 025895          185 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID  228 (246)
Q Consensus       185 ~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~  228 (246)
                      ++.....--...+++++|+|..|....++....+.++++.+|+.
T Consensus        16 a~~~~g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~   59 (222)
T d1vl6a1          16 ALKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK   59 (222)
T ss_dssp             HHHHHTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             HHHHhCCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecce
Confidence            33333333455789999999999998899989999999999876

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=83.63  E-value=0.89  Score=30.45  Aligned_cols=34  Identities=18%  Similarity=0.016  Sum_probs=26.5

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHc---CCCeEEEEcCCh
Q 025895          195 GSIVAVFGLGTVGLAVAEGAKAA---GASRVIGIDIDP  229 (246)
Q Consensus       195 ~~~VlI~Gag~~G~~ai~~a~~~---G~~~vi~~~~~~  229 (246)
                      .++++|+|+|.+|.-.+.++..+   |. .|..+.+++
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~-~Vtli~~~~   54 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGG-QVDLAYRGD   54 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTC-EEEEEESSS
T ss_pred             CCeEEEECCChHHHHHHHHhHhhccccc-ccceecccc
Confidence            47899999999998877765544   66 788887765

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.46  E-value=1.3  Score=35.62  Aligned_cols=51  Identities=18%  Similarity=0.230  Sum_probs=41.4

Q ss_pred             hhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       186 l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      +.+..+++++++||=+|.| .|..++++|+..++.++++++.+++..+.+++
T Consensus       143 ~~~~~~l~~~~~vlD~GcG-~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~  193 (328)
T d1nw3a_         143 MIDEIKMTDDDLFVDLGSG-VGQVVLQVAAATNCKHHYGVEKADIPAKYAET  193 (328)
T ss_dssp             HHHHSCCCTTCEEEEETCT-TSHHHHHHHHHCCCSEEEEEECSHHHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEcCCC-CCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH
Confidence            5677889999988877764 46777889999998789999999987766643

>d1p3ha_ b.35.1.1 (A:) Chaperonin-10 (GroES) {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.30  E-value=0.96  Score=29.75  Aligned_cols=25  Identities=40%  Similarity=0.504  Sum_probs=19.8

Q ss_pred             eEEEEEEcCCCCC----------ccCCCCEEEeeC
Q 025895           71 AAGIVESVGEGVT----------EVQPGDHVIPCY   95 (246)
Q Consensus        71 ~vG~V~~vG~~~~----------~~~~Gd~V~~~~   95 (246)
                      ..|+|+++|++..          .+++||+|+...
T Consensus        38 ~~G~VvavG~g~~~~~~~~~~~~~vk~GD~Vl~~~   72 (99)
T d1p3ha_          38 QEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSK   72 (99)
T ss_dssp             EEEEEEEECCCEECSSSSCEECCSCCTTCEEEEEC
T ss_pred             eEEEEEEECCceEcCCCCEecCCeeecCCEEEEcc
Confidence            4699999998742          378999998654

>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.12  E-value=1.9  Score=34.94  Aligned_cols=56  Identities=18%  Similarity=0.228  Sum_probs=42.7

Q ss_pred             hhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEc--CChhHHHHHhhcCCCcc
Q 025895          188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID--IDPKKFDRGMSCVSSSK  243 (246)
Q Consensus       188 ~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~--~~~~~~~~~~~lg~~~~  243 (246)
                      +...+++...|+...+|..|.+.+.+|+.+|.+-++++.  .+++|.+.++.+||++.
T Consensus        90 ~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~Gi~~~iv~p~~~~~~k~~~i~~~GA~vv  147 (355)
T d1jbqa_          90 RDGTLKPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIV  147 (355)
T ss_dssp             HHTCSCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEECSCCCHHHHHHHHHTTCEEE
T ss_pred             HcCCcccCceEEEecccchhhHHHHHHHhccCCeEEEeeccchHHHHHHHHhcCCeEE
Confidence            445566777777667799999999999999994444443  34578999999999853

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.11  E-value=0.45  Score=38.14  Aligned_cols=39  Identities=36%  Similarity=0.476  Sum_probs=29.3

Q ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 025895          190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK  230 (246)
Q Consensus       190 ~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~  230 (246)
                      ..+.++++||-+|+|. |++++.+|+ .|+.+|++++.++.
T Consensus        29 ~~~~~~~~VLDiGcG~-G~ls~~aa~-~Ga~~V~avd~s~~   67 (316)
T d1oria_          29 RHLFKDKVVLDVGSGT-GILCMFAAK-AGARKVIGIECSSI   67 (316)
T ss_dssp             HHHHTTCEEEEETCTT-SHHHHHHHH-TTCSEEEEEECSTT
T ss_pred             cccCCcCEEEEEecCC-cHHHHHHHH-hCCCEEEEEcCcHH
Confidence            3456789999898864 666666666 68778999998874

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=83.11  E-value=1.5  Score=30.75  Aligned_cols=37  Identities=30%  Similarity=0.433  Sum_probs=30.5

Q ss_pred             CEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCChhHH
Q 025895          196 SIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKF  232 (246)
Q Consensus       196 ~~VlI~Gag~~G~~ai~~a~~~G~-~~vi~~~~~~~~~  232 (246)
                      .+|.|+|+|.+|..++..+...+. .+++.+|.++++.
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~   39 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERV   39 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccc
Confidence            468888999999998877777775 6799999888764

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=82.96  E-value=1.1  Score=31.49  Aligned_cols=47  Identities=19%  Similarity=0.082  Sum_probs=37.0

Q ss_pred             hhhhhhhhhhCCCCCCCEEEEE--CCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          180 PTGLGAVWNTAKVEPGSIVAVF--GLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       180 ~ta~~~l~~~~~~~~~~~VlI~--Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      .|+...+  .....+++.++|+  |+|.+|+-+++++..+|. +|..+.+.+
T Consensus        26 ~t~~d~l--~~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~-~Vtlv~~~~   74 (156)
T d1djqa2          26 LTPEQVM--DGKKKIGKRVVILNADTYFMAPSLAEKLATAGH-EVTIVSGVH   74 (156)
T ss_dssp             ECHHHHH--HTCSCCCSEEEEEECCCSSHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             ECHHHHh--cCccccCCceEEEecCCChHHHHHHHHHHHcCC-eEEEEecCC
Confidence            3555533  3566788888887  778999999999999999 888887765

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=82.80  E-value=0.6  Score=38.44  Aligned_cols=32  Identities=28%  Similarity=0.364  Sum_probs=24.8

Q ss_pred             EEEEECCCHHHHHHHHHHHH------cCCCeEEEEcCCh
Q 025895          197 IVAVFGLGTVGLAVAEGAKA------AGASRVIGIDIDP  229 (246)
Q Consensus       197 ~VlI~Gag~~G~~ai~~a~~------~G~~~vi~~~~~~  229 (246)
                      .|+|+|+|+.|+.++..+..      .|+ +|.+++..+
T Consensus        34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl-~VlllEK~~   71 (380)
T d2gmha1          34 DVVIVGAGPAGLSAATRLKQLAAQHEKDL-RVCLVEKAA   71 (380)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHTTCCC-CEEEECSSS
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhhcCCC-EEEEEcCCC
Confidence            58889999999886544433      688 899998765

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=82.56  E-value=1.1  Score=30.03  Aligned_cols=36  Identities=19%  Similarity=0.058  Sum_probs=27.7

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCC--eEEEEcCCh
Q 025895          194 PGSIVAVFGLGTVGLAVAEGAKAAGAS--RVIGIDIDP  229 (246)
Q Consensus       194 ~~~~VlI~Gag~~G~~ai~~a~~~G~~--~vi~~~~~~  229 (246)
                      ..++++|+|+|.+|.-.+..+..++..  .|..+.+.+
T Consensus        19 ~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          19 PPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             cCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            347999999999999887777766542  688887765

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=82.46  E-value=1.9  Score=30.94  Aligned_cols=41  Identities=24%  Similarity=0.395  Sum_probs=33.7

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCChhHH
Q 025895          192 VEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKF  232 (246)
Q Consensus       192 ~~~~~~VlI~Gag~~G~~ai~~a~~~G~-~~vi~~~~~~~~~  232 (246)
                      ..+..+|.|+|+|.+|...+..+...|. .+++.+|.++++.
T Consensus        17 ~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a   58 (160)
T d1i0za1          17 TVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKL   58 (160)
T ss_dssp             CCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHH
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchh
Confidence            3445789999999999998888888875 6799999887664

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.43  E-value=1.1  Score=37.23  Aligned_cols=51  Identities=24%  Similarity=0.369  Sum_probs=41.7

Q ss_pred             hhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       186 l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      +.+..++++++++|=+|.| +|..++++|+..|+.++++++.++...+.+++
T Consensus       208 Il~~l~Lkpgd~fLDLGCG-~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~  258 (406)
T d1u2za_         208 VYQQCQLKKGDTFMDLGSG-VGNCVVQAALECGCALSFGCEIMDDASDLTIL  258 (406)
T ss_dssp             HHHHTTCCTTCEEEEESCT-TSHHHHHHHHHHCCSEEEEEECCHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEeCCCC-CcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence            5677889999987766764 57888899999998789999999987776654

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=82.43  E-value=0.92  Score=34.17  Aligned_cols=49  Identities=20%  Similarity=0.203  Sum_probs=37.0

Q ss_pred             hhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       186 l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      +...++++++++||=+|.| .|..+..+++. +. +|+++|.+++-++.+++
T Consensus         8 l~~~~~~~~~~rILDiGcG-tG~~~~~la~~-~~-~v~gvD~S~~~l~~A~~   56 (234)
T d1xxla_           8 MIKTAECRAEHRVLDIGAG-AGHTALAFSPY-VQ-ECIGVDATKEMVEVASS   56 (234)
T ss_dssp             HHHHHTCCTTCEEEEESCT-TSHHHHHHGGG-SS-EEEEEESCHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEeCCc-CcHHHHHHHHh-CC-eEEEEeCChhhhhhhhh
Confidence            5678899999999888874 25556666664 56 89999999987766543

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.38  E-value=1.6  Score=34.26  Aligned_cols=53  Identities=15%  Similarity=0.258  Sum_probs=41.5

Q ss_pred             hhhhhhhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          183 LGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       183 ~~~l~~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      +..+.+..++++|++||=+|.|-=| .+..+++..|+ +|++++.+++..+.+++
T Consensus        41 ~~~~~~~l~l~~g~~VLDiGCG~G~-~a~~~a~~~g~-~v~gi~ls~~q~~~a~~   93 (280)
T d2fk8a1          41 VDLNLDKLDLKPGMTLLDIGCGWGT-TMRRAVERFDV-NVIGLTLSKNQHARCEQ   93 (280)
T ss_dssp             HHHHHTTSCCCTTCEEEEESCTTSH-HHHHHHHHHCC-EEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCEEEEecCCchH-HHHHHHHhCce-eEEEecchHHHHHHHHH
Confidence            3346678899999999999875223 45678888899 99999999998876654

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=81.60  E-value=1.4  Score=30.80  Aligned_cols=37  Identities=19%  Similarity=0.209  Sum_probs=29.8

Q ss_pred             EEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCChhHHH
Q 025895          197 IVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFD  233 (246)
Q Consensus       197 ~VlI~Gag~~G~~ai~~a~~~G~-~~vi~~~~~~~~~~  233 (246)
                      +|.|+|+|.+|...+..+...+. .+++.+|.++++.+
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~   39 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQ   39 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccch
Confidence            47788999999887777777774 68999998887654

>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Escherichia coli, isoform B (CysM) [TaxId: 562]

Probab=81.41  E-value=1.9  Score=33.62  Aligned_cols=55  Identities=15%  Similarity=0.183  Sum_probs=41.6

Q ss_pred             hhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEc--CChhHHHHHhhcCCCc
Q 025895          188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID--IDPKKFDRGMSCVSSS  242 (246)
Q Consensus       188 ~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~--~~~~~~~~~~~lg~~~  242 (246)
                      +.....+..+|+...+|..|++.+..++.+|..-+|.+.  .++.|.+.++.+||.+
T Consensus        53 ~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v  109 (292)
T d2bhsa1          53 KRGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAEL  109 (292)
T ss_dssp             HTTSCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEEEESCCCHHHHHHHHHTTCEE
T ss_pred             HhCCcCCCceeeeecccchhHHHHHHHHhcCcceEeeeccCchhhhhHHHHHhCCCc
Confidence            445556666766667799999999999999994444443  3557889999999984

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=81.05  E-value=1.6  Score=32.52  Aligned_cols=49  Identities=16%  Similarity=0.281  Sum_probs=37.7

Q ss_pred             hhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHhh
Q 025895          188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRGMS  237 (246)
Q Consensus       188 ~~~~~~~~~~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~~~~~~~~~  237 (246)
                      ....++||++||=+|+|. |..+..+++..+-.+|+++|.+++.++.+++
T Consensus        50 ~~l~lkpg~~VLDlGcG~-G~~~~~la~~v~~g~V~gvDis~~~i~~a~~   98 (209)
T d1nt2a_          50 HRLKLRGDERVLYLGAAS-GTTVSHLADIVDEGIIYAVEYSAKPFEKLLE   98 (209)
T ss_dssp             CCCCCCSSCEEEEETCTT-SHHHHHHHHHTTTSEEEEECCCHHHHHHHHH
T ss_pred             ccCCCCCCCEEEEeCCcC-CHHHHHHHHhccCCeEEEEeCCHHHHHHHHH
Confidence            356799999999888742 4566677777765589999999988876654

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=80.69  E-value=0.87  Score=34.97  Aligned_cols=32  Identities=25%  Similarity=0.227  Sum_probs=27.3

Q ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 025895          197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP  229 (246)
Q Consensus       197 ~VlI~Gag~~G~~ai~~a~~~G~~~vi~~~~~~  229 (246)
                      .++|+|+|+.|+.++..+..+|. +|.+++..+
T Consensus        44 DvvVIGgG~aG~~aA~~~a~~G~-kv~vve~~~   75 (261)
T d1mo9a1          44 DAIFIGGGAAGRFGSAYLRAMGG-RQLIVDRWP   75 (261)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-eEEEEeccC
Confidence            47888999999999999999999 788887644

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=80.30  E-value=1  Score=34.54  Aligned_cols=34  Identities=29%  Similarity=0.381  Sum_probs=28.5

Q ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcC
Q 025895          193 EPGSIVAVFGLGTVGLAVAEGA-KAAGASRVIGIDI  227 (246)
Q Consensus       193 ~~~~~VlI~Gag~~G~~ai~~a-~~~G~~~vi~~~~  227 (246)
                      -.+.+|+|.|-|.+|..+++.+ +..|+ ++++++.
T Consensus        29 l~g~~vaIqG~GnVG~~~a~~L~~e~Ga-~vv~vsd   63 (234)
T d1b26a1          29 PKKATVAVQGFGNVGQFAALLISQELGS-KVVAVSD   63 (234)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHHCC-EEEEEEE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHhcCC-ceEEeec
Confidence            3678999999999999988877 67899 8887763