Citrus Sinensis ID: 025932

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240------
MENYGRSKNGAEAQTVLNCIDLSSPDIQQSVSLLKQACLDCGFFYVVNHGISQEFMEEVFSQSKRFFKMPLNEKMKVLRNEKHRGYTPVLDELLDPDTQVRGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDCLPGWRETMERFQREALEVAKAVARIIALALDLDADFFDKPEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKG
ccccccccccccccccccccccccccHHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHHcccHHHHHcccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccEEEccccccccEEEcccccc
ccccccccccccccccccEEEcccccHHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHHccccccccccccccccccccccccccEEEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccccccHEEEEEEcccccccccccEEEcccccccccEEEEEEccccccEEEEEcccccccEEEEEccccc
menygrskngaeaQTVLncidlsspdiQQSVSLLKQACLDCGFFYVVNHGISQEFMEEVFSQSKRFFKMPLNEKMKVLRnekhrgytpvldelldpdtqvrgdykegyyigvevpegdpesekpfygpnvwpapdclpgwRETMERFQREALEVAKAVARIIALALdldadffdkpeMLGQAIATLRLLHyegqisdpskgmygagahsdyGLITLLATdevaglqickdrdakpqlwedvapmkg
menygrskngaeAQTVLNCIDLSSPDIQQSVSLLKQACLDCGFFYVVNHGISQEFMEEVFSQSKRFFKMPLNEKMKVlrnekhrgytpvldelldpdtqvrgDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDCLPGWRETMERFQREALEVAKAVARIIALALDLDADFFDKPEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQICKdrdakpqlwedvapmkg
MENYGRSKNGAEAQTVLNCIDLSSPDIQQSVSLLKQACLDCGFFYVVNHGISQEFMEEVFSQSKRFFKMPLNEKMKVLRNEKHRGYTPVLDELLDPDTQVRGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDCLPGWRETMERFQREALEVAKAVARIIalaldldadFFDKPEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKG
**************TVLNCIDLSSPDIQQSVSLLKQACLDCGFFYVVNHGISQEFMEEVFSQSKRFFKMPLNEKMKVLRNEKHRGYTPVLDELLDPDTQVRGDYKEGYYIGVEV**********FYGPNVWPAPDCLPGWRETMERFQREALEVAKAVARIIALALDLDADFFDKPEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDR***************
****************LNCIDLSSPDIQQSVSLLKQACLDCGFFYVVNHGISQEFMEEVFSQSKRFFKMPLNEKMKVLRNEKHRGYTPVLDELL***TQVRGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDCLPGWRETMERFQREALEVAKAVARIIALALDLDADFFDKPEMLGQAIATLRLLHYEGQIS*******GAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPMK*
**********AEAQTVLNCIDLSSPDIQQSVSLLKQACLDCGFFYVVNHGISQEFMEEVFSQSKRFFKMPLNEKMKVLRNEKHRGYTPVLDELLDPDTQVRGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDCLPGWRETMERFQREALEVAKAVARIIALALDLDADFFDKPEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKG
***********EAQTVLNCIDLSSPDIQQSVSLLKQACLDCGFFYVVNHGISQEFMEEVFSQSKRFFKMPLNEKMKVLRNEKHRGYTPVLDELLDPDTQVRGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDCLPGWRETMERFQREALEVAKAVARIIALALDLDADFFDKPEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPM**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MENYGRSKNGAEAQTVLNCIDLSSPDIQQSVSLLKQACLDCGFFYVVNHGISQEFMEEVFSQSKRFFKMPLNEKMKVLRNEKHRGYTPVLDELLDPDTQVRGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDCLPGWRETMERFQREALEVAKAVARIIALALDLDADFFDKPEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query246 2.2.26 [Sep-21-2011]
Q54RA4363 Probable iron/ascorbate o yes no 0.825 0.559 0.296 8e-22
Q7LL04321 UPF0676 protein C1494.01 yes no 0.784 0.601 0.341 2e-18
A6BM06 368 1-aminocyclopropane-1-car N/A no 0.898 0.600 0.278 4e-17
Q76NT9 368 1-aminocyclopropane-1-car no no 0.898 0.600 0.278 4e-17
Q40062339 2'-deoxymugineic-acid 2'- N/A no 0.861 0.625 0.282 4e-13
P40902397 Sexual differentiation pr no no 0.833 0.516 0.262 2e-12
Q96330336 Flavonol synthase/flavano no no 0.764 0.559 0.277 8e-12
Q9M547334 Flavonol synthase/flavano N/A no 0.760 0.559 0.282 1e-11
Q39224358 Protein SRG1 OS=Arabidops no no 0.780 0.536 0.295 1e-11
A2A1A0352 S-norcoclaurine synthase N/A no 0.808 0.565 0.280 3e-11
>sp|Q54RA4|Y3291_DICDI Probable iron/ascorbate oxidoreductase DDB_G0283291 OS=Dictyostelium discoideum GN=DDB_G0283291 PE=3 SV=1 Back     alignment and function desciption
 Score =  103 bits (258), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 118/236 (50%), Gaps = 33/236 (13%)

Query: 34  LKQACLDCGFFYVVNHGISQEFMEEVFSQSKRFFKMPLNEKMKV---LRNEKHRGYTPVL 90
           ++ AC + GFFY+  HGI QE ++ +   SK+FF +  + KMK    L  +  RGY  V 
Sbjct: 38  IENACKNFGFFYIKGHGIDQELIDRLERLSKKFFSLDQSIKMKYRMELAQKAWRGYFVVG 97

Query: 91  DELLDPDTQVRGDYKEGYYIGVEVPEGDPE--SEKPFYGPNVWPAPD-----CLPGWRET 143
            EL    T    D+KEG Y+G E+ +  P   ++ P +G N++P  +      + G+++T
Sbjct: 98  GEL----TSGLKDWKEGLYLGTELNDDHPLVIAQTPLHGLNLFPTLEEEIEYDIVGFKDT 153

Query: 144 MERFQREALEVAKAVARIIALALDLDADFFDKPEMLGQAIATLRLLHYEGQIS------- 196
           +  +  +  ++  ++  +IA++L+L AD+F         +   R+ +Y   IS       
Sbjct: 154 ILTYIDKVTKLGHSLMELIAISLNLSADYF-SSRYTKDPLILYRIFNYPSIISSGDDNKT 212

Query: 197 ------DPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKG 246
                 D  K  +G G H+DYG++T+L  D+V GLQ+          W    P+KG
Sbjct: 213 TGESSDDNDKVEWGVGEHTDYGVLTILYQDDVGGLQVHSKNG-----WISAPPIKG 263

Dictyostelium discoideum (taxid: 44689)
EC: 1EC: .EC: 1EC: 4EC: .EC: -EC: .EC: -
>sp|Q7LL04|YQK1_SCHPO UPF0676 protein C1494.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1494.01 PE=3 SV=2 Back     alignment and function description
>sp|A6BM06|ACCO1_DICMU 1-aminocyclopropane-1-carboxylate oxidase OS=Dictyostelium mucoroides GN=aco PE=3 SV=1 Back     alignment and function description
>sp|Q76NT9|ACCO1_DICDI 1-aminocyclopropane-1-carboxylate oxidase OS=Dictyostelium discoideum GN=aco PE=2 SV=1 Back     alignment and function description
>sp|Q40062|IDS3_HORVU 2'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vulgare GN=IDS3 PE=1 SV=3 Back     alignment and function description
>sp|P40902|ISP7_SCHPO Sexual differentiation process protein isp7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=isp7 PE=2 SV=1 Back     alignment and function description
>sp|Q96330|FLS1_ARATH Flavonol synthase/flavanone 3-hydroxylase OS=Arabidopsis thaliana GN=FLS1 PE=1 SV=1 Back     alignment and function description
>sp|Q9M547|FLS_EUSER Flavonol synthase/flavanone 3-hydroxylase OS=Eustoma exaltatum subsp. russellianum GN=FLS PE=2 SV=1 Back     alignment and function description
>sp|Q39224|SRG1_ARATH Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1 Back     alignment and function description
>sp|A2A1A0|NCS1_COPJA S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query246
224143627268 2-oxoglutarate-dependent dioxygenase [Po 1.0 0.917 0.795 1e-114
225445104 358 PREDICTED: probable iron/ascorbate oxido 0.975 0.670 0.813 1e-113
297738763330 unnamed protein product [Vitis vinifera] 0.975 0.727 0.813 1e-113
255546339340 Hyoscyamine 6-dioxygenase, putative [Ric 1.0 0.723 0.772 1e-112
224143624336 predicted protein [Populus trichocarpa] 0.943 0.690 0.819 1e-112
388522983340 unknown [Medicago truncatula] 0.943 0.682 0.818 1e-112
225445102 364 PREDICTED: probable iron/ascorbate oxido 0.975 0.659 0.793 1e-111
255641899331 unknown [Glycine max] 0.943 0.700 0.819 1e-110
356495885331 PREDICTED: probable iron/ascorbate oxido 0.943 0.700 0.797 1e-110
255636224331 unknown [Glycine max] 0.943 0.700 0.793 1e-109
>gi|224143627|ref|XP_002325021.1| 2-oxoglutarate-dependent dioxygenase [Populus trichocarpa] gi|222866455|gb|EEF03586.1| 2-oxoglutarate-dependent dioxygenase [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  415 bits (1067), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 198/249 (79%), Positives = 222/249 (89%), Gaps = 3/249 (1%)

Query: 1   MENYGRSKNGAEAQTV--LNCIDLSSPDIQQSVSLLKQACLDCGFFYVVNHGISQEFMEE 58
           MEN  +  +  E  T+  LNCIDLS+PD+QQSVSLLKQACLDCGFFYV NHGISQEFMEE
Sbjct: 1   MENMPKQDDTPEPTTISFLNCIDLSTPDVQQSVSLLKQACLDCGFFYVTNHGISQEFMEE 60

Query: 59  VFSQSKRFFKMPLNEKMKVLRNEKHRGYTPVLDELLDPDTQVR-GDYKEGYYIGVEVPEG 117
           VFSQSK+FF++PL+EKMKVLRNEKHRGYTPVLDELLDPD Q+  GDYKEGYYIGVEVPE 
Sbjct: 61  VFSQSKKFFELPLSEKMKVLRNEKHRGYTPVLDELLDPDNQIHVGDYKEGYYIGVEVPED 120

Query: 118 DPESEKPFYGPNVWPAPDCLPGWRETMERFQREALEVAKAVARIIALALDLDADFFDKPE 177
           DPE++KPFYGPNVWPA   LPGWR+TME+F ++AL VA+AVARIIALALDL+ADFFDKPE
Sbjct: 121 DPEADKPFYGPNVWPADGILPGWRQTMEKFHQQALGVARAVARIIALALDLEADFFDKPE 180

Query: 178 MLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQL 237
           MLG  IA +RLLHY GQISDPSKG+YGAGAHSDYGLITLLATD V GLQICKD+DA+PQ+
Sbjct: 181 MLGHPIAVMRLLHYAGQISDPSKGLYGAGAHSDYGLITLLATDNVYGLQICKDKDAQPQV 240

Query: 238 WEDVAPMKG 246
           WE VAP+KG
Sbjct: 241 WEFVAPLKG 249

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225445104|ref|XP_002283713.1| PREDICTED: probable iron/ascorbate oxidoreductase DDB_G0283291-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297738763|emb|CBI28008.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255546339|ref|XP_002514229.1| Hyoscyamine 6-dioxygenase, putative [Ricinus communis] gi|223546685|gb|EEF48183.1| Hyoscyamine 6-dioxygenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224143624|ref|XP_002325020.1| predicted protein [Populus trichocarpa] gi|222866454|gb|EEF03585.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|388522983|gb|AFK49553.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|225445102|ref|XP_002283708.1| PREDICTED: probable iron/ascorbate oxidoreductase DDB_G0283291-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255641899|gb|ACU21218.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356495885|ref|XP_003516801.1| PREDICTED: probable iron/ascorbate oxidoreductase DDB_G0283291-like [Glycine max] Back     alignment and taxonomy information
>gi|255636224|gb|ACU18453.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query246
TAIR|locus:2203325329 AT1G35190 [Arabidopsis thalian 0.930 0.696 0.669 4.3e-86
TAIR|locus:2075125330 AT3G46490 [Arabidopsis thalian 0.995 0.742 0.577 2.4e-76
TAIR|locus:2078241286 AT3G46480 [Arabidopsis thalian 0.443 0.381 0.609 1.1e-56
TAIR|locus:2075130251 AT3G46500 [Arabidopsis thalian 0.666 0.653 0.540 1.4e-48
TAIR|locus:504955434247 AT4G16765 [Arabidopsis thalian 0.670 0.668 0.412 3e-30
ASPGD|ASPL0000035942 349 AN11188 [Emericella nidulans ( 0.845 0.595 0.372 9.1e-29
UNIPROTKB|G4NB73346 MGG_00611 "2OG-Fe(II) oxygenas 0.784 0.557 0.352 7.6e-25
ASPGD|ASPL0000060477332 AN0526 [Emericella nidulans (t 0.756 0.560 0.325 2.1e-20
TIGR_CMR|SPO_2669317 SPO_2669 "oxidoreductase, 2OG- 0.780 0.605 0.311 1.2e-19
TAIR|locus:2074800332 AT3G50210 [Arabidopsis thalian 0.906 0.671 0.279 3.1e-19
TAIR|locus:2203325 AT1G35190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 861 (308.1 bits), Expect = 4.3e-86, P = 4.3e-86
 Identities = 154/230 (66%), Positives = 187/230 (81%)

Query:    17 LNCIDLSSPDIQQSVSLLKQACLDCGFFYVVNHGISQEFMEEVFSQSKRFFKMPLNEKMK 76
             LNCIDL++ D+  SV  LKQACLDCGFFYV+NHGIS+EFM++VF QSK+ F +PL EKMK
Sbjct:    12 LNCIDLANDDLNHSVVSLKQACLDCGFFYVINHGISEEFMDDVFEQSKKLFALPLEEKMK 71

Query:    77 VLRNEKHRGYTPVLDELLDPDTQVRGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDC 136
             VLRNEKHRGYTPVLDELLDP  Q+ GD+KEGYYIG+EVP+ DP  +KPFYGPN WP  D 
Sbjct:    72 VLRNEKHRGYTPVLDELLDPKNQINGDHKEGYYIGIEVPKDDPHWDKPFYGPNPWPDADV 131

Query:   137 LPGWRETMERFQREALEVAKAVARIIXXXXXXXXXFFDKPEMLGQAIATLRLLHYEGQIS 196
             LPGWRETME++ +EAL V+ A+AR++         +FD+ EMLG+ IAT+RLL Y+G IS
Sbjct:   132 LPGWRETMEKYHQEALRVSMAIARLLALALDLDVGYFDRTEMLGKPIATMRLLRYQG-IS 190

Query:   197 DPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKG 246
             DPSKG+Y  GAHSD+G++TLLATD V GLQICKD++A PQ WE V P+KG
Sbjct:   191 DPSKGIYACGAHSDFGMMTLLATDGVMGLQICKDKNAMPQKWEYVPPIKG 240
GO:0005506 "iron ion binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0009821 "alkaloid biosynthetic process" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2075125 AT3G46490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078241 AT3G46480 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075130 AT3G46500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504955434 AT4G16765 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000035942 AN11188 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|G4NB73 MGG_00611 "2OG-Fe(II) oxygenase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ASPGD|ASPL0000060477 AN0526 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2669 SPO_2669 "oxidoreductase, 2OG-Fe(II) oxygenase family" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TAIR|locus:2074800 AT3G50210 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query246
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 1e-123
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 2e-56
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 2e-47
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 9e-41
PLN02485329 PLN02485, PLN02485, oxidoreductase 2e-32
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 3e-20
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 1e-19
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 2e-18
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 1e-17
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 2e-16
PLN02216357 PLN02216, PLN02216, protein SRG1 2e-14
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 7e-14
PLN02704335 PLN02704, PLN02704, flavonol synthase 9e-14
PLN02997325 PLN02997, PLN02997, flavonol synthase 1e-13
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 1e-12
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 4e-12
PLN02515 358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 3e-11
PLN02299 321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 4e-11
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 2e-10
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 4e-10
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 2e-08
PLN02904357 PLN02904, PLN02904, oxidoreductase 3e-08
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 6e-08
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 2e-07
PLN02947374 PLN02947, PLN02947, oxidoreductase 5e-07
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 2e-05
PLN02947374 PLN02947, PLN02947, oxidoreductase 4e-04
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 4e-04
PLN03176120 PLN03176, PLN03176, flavanone-3-hydroxylase; Provi 9e-04
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information 
 Score =  352 bits (903), Expect = e-123
 Identities = 163/246 (66%), Positives = 203/246 (82%), Gaps = 3/246 (1%)

Query: 1   MENYGRSKNGAEAQTVLNCIDLSSPDIQQSVSLLKQACLDCGFFYVVNHGISQEFMEEVF 60
           MEN+  +K+     + LNCIDL++ D+  SV+ LKQACLDCGFFYV+NHGI++EFM++VF
Sbjct: 1   MENH--TKDSTMKVSSLNCIDLANDDLNHSVASLKQACLDCGFFYVINHGINEEFMDDVF 58

Query: 61  SQSKRFFKMPLNEKMKVLRNEKHRGYTPVLDELLDPDTQVRGDYKEGYYIGVEVPEGDPE 120
            QSK+FF +PL EKMKVLRNEKHRGYTPVLDE LDP  Q+ GD+KEGYYIG+EVP+ DP 
Sbjct: 59  EQSKKFFALPLEEKMKVLRNEKHRGYTPVLDEKLDPKNQINGDHKEGYYIGIEVPKDDPH 118

Query: 121 SEKPFYGPNVWPAPDCLPGWRETMERFQREALEVAKAVARIIALALDLDADFFDKPEMLG 180
            +KPFYGPN WP  D LPGWRETME++ +EAL V+ A+A+++ALALDLD  +FD+ EMLG
Sbjct: 119 WDKPFYGPNPWPDADVLPGWRETMEKYHQEALRVSMAIAKLLALALDLDVGYFDRTEMLG 178

Query: 181 QAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWED 240
           + IAT+RLL Y+G ISDPSKG+Y  GAHSD+G++TLLATD V GLQICKD++A PQ WE 
Sbjct: 179 KPIATMRLLRYQG-ISDPSKGIYACGAHSDFGMMTLLATDGVMGLQICKDKNAMPQKWEY 237

Query: 241 VAPMKG 246
           V P+KG
Sbjct: 238 VPPIKG 243

Length = 332
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178720 PLN03176, PLN03176, flavanone-3-hydroxylase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 246
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02485329 oxidoreductase 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02997325 flavonol synthase 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN02216357 protein SRG1 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02515 358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02947374 oxidoreductase 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02704335 flavonol synthase 100.0
PLN02299 321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02904357 oxidoreductase 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.94
PLN03176120 flavanone-3-hydroxylase; Provisional 99.77
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.11
PRK08130213 putative aldolase; Validated 84.5
PRK08333184 L-fuculose phosphate aldolase; Provisional 83.44
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information 
Probab=100.00  E-value=3e-54  Score=372.92  Aligned_cols=243  Identities=65%  Similarity=1.171  Sum_probs=198.9

Q ss_pred             CCCccCCCCCCCCCCccceeeCCCcchHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHHHhHhhCCCHHHHhhhccC
Q 025932            1 MENYGRSKNGAEAQTVLNCIDLSSPDIQQSVSLLKQACLDCGFFYVVNHGISQEFMEEVFSQSKRFFKMPLNEKMKVLRN   80 (246)
Q Consensus         1 ~~~~~~~~~~~~~~~~iPvIDls~~~~~~~~~~l~~A~~~~Gff~l~~hgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~   80 (246)
                      |||.-.-.  ++....||+|||+..++..++++|.+||+++|||||+||||+.++++++++++++||+||.|+|+++...
T Consensus         1 ~~~~~~~~--~~~~~~iP~IDl~~~~~~~~~~~l~~Ac~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~LP~e~K~k~~~~   78 (332)
T PLN03002          1 MENHTKDS--TMKVSSLNCIDLANDDLNHSVASLKQACLDCGFFYVINHGINEEFMDDVFEQSKKFFALPLEEKMKVLRN   78 (332)
T ss_pred             CCcccccc--cCCCCCCCEEeCCchhHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccC
Confidence            55554333  3456799999999766667889999999999999999999999999999999999999999999999776


Q ss_pred             CCCcccccCcccccCCCCCCCCCcceeeeecccCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 025932           81 EKHRGYTPVLDELLDPDTQVRGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDCLPGWRETMERFQREALEVAKAVAR  160 (246)
Q Consensus        81 ~~~~GY~~~~~e~~~~~~~~~~d~~E~~~~~~~~~~~~~~~~~~~~~~n~~P~~~~~~~~~~~~~~y~~~~~~l~~~ll~  160 (246)
                      ...+||.+.+.+..........|++|.|.++.+.+.+.+.....++.+|.||.++.+|+|++++++|+++|.+|+..||+
T Consensus        79 ~~~~GY~~~~~e~~~~~~~~~~d~kE~f~~~~~~p~~~~~~~~~~~~~n~wP~~~~~p~fr~~~~~y~~~~~~l~~~ll~  158 (332)
T PLN03002         79 EKHRGYTPVLDEKLDPKNQINGDHKEGYYIGIEVPKDDPHWDKPFYGPNPWPDADVLPGWRETMEKYHQEALRVSMAIAK  158 (332)
T ss_pred             CCCCCcCcccccccccccCCCCcceeeeEecccCCCCCccccccccCCCCCcCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence            66899998877665433223479999999986554443332334567899997555789999999999999999999999


Q ss_pred             HHHHhCCCCcccccCcccccCcccceEecccCCCCCCCCCCccccccccccCceeEEeeCCCCceeEeeCCCCCCCCeEe
Q 025932          161 IIALALDLDADFFDKPEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWED  240 (246)
Q Consensus       161 ~l~~~Lgl~~~~~~~~~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~~~HtD~g~lTiL~qd~~~GLqv~~~~~~~~~~W~~  240 (246)
                      +|+++||+++++|.+.+.+..+.+.||++|||+++.. ....+|+++|||+|+||||+||+++||||+.+++..+++|++
T Consensus       159 ~la~~Lgl~~~~f~~~~~~~~~~~~lrl~~YP~~~~~-~~~~~g~~~HTD~g~lTlL~qd~v~GLQV~~~~~~~~g~Wi~  237 (332)
T PLN03002        159 LLALALDLDVGYFDRTEMLGKPIATMRLLRYQGISDP-SKGIYACGAHSDFGMMTLLATDGVMGLQICKDKNAMPQKWEY  237 (332)
T ss_pred             HHHHHcCCChHHhccccccCCCchheeeeeCCCCCCc-ccCccccccccCCCeEEEEeeCCCCceEEecCCCCCCCcEEE
Confidence            9999999999999843355666789999999998654 235789999999999999999999999998764212347999


Q ss_pred             CCCCCC
Q 025932          241 VAPMKG  246 (246)
Q Consensus       241 V~p~~g  246 (246)
                      |+|+||
T Consensus       238 Vpp~pg  243 (332)
T PLN03002        238 VPPIKG  243 (332)
T ss_pred             CCCCCC
Confidence            999987

>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02216 protein SRG1 Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PRK08130 putative aldolase; Validated Back     alignment and domain information
>PRK08333 L-fuculose phosphate aldolase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query246
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 3e-07
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 9e-07
1ips_A331 Isopenicillin N Synthase From Aspergillus Nidulans 7e-06
2bjs_A325 Isopenicillin N Synthase C-Terminal Truncation Muta 7e-06
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 5e-05
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 5e-05
1w9y_A 319 The Structure Of Acc Oxidase Length = 319 1e-04
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 2e-04
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure 
Iteration: 1

 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 84/206 (40%), Gaps = 15/206 (7%)
Query: 42  GFFYVVNHGISQEFMEEVFSQSKRFFKMPLNEKMKVLRNEK-HRGYTPVLDELLDPDTQV 100
           GF  + ++ + Q  ++     +K FF +P+  K +    +   RGY P   E        
Sbjct: 34  GFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYIPFGVETAKGADHY 93
Query: 101 RGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDCLPGWRETMERFQREALEVAKAVAR 160
             D KE ++ G ++P G     +     NVWPA   +P ++  +             V  
Sbjct: 94  --DLKEFWHXGRDLPPG--HRFRAHXADNVWPAE--IPAFKHDVSWLYNSLDGXGGKVLE 147
Query: 161 IIXXXXXXXXXFFDKPEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLITLLATD 220
            I         FF      G ++  LRLLHY   I   + G+  AGAH D   ITLL   
Sbjct: 148 AIATYLKLERDFFKPTVQDGNSV--LRLLHYP-PIPKDATGVR-AGAHGDINTITLLLGA 203
Query: 221 EVAGLQICKDRDAKPQLWEDVAPMKG 246
           E  GL++  DRD +   W  + P  G
Sbjct: 204 EEGGLEVL-DRDGQ---WLPINPPPG 225
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Manganese Complex) Length = 331 Back     alignment and structure
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant Length = 325 Back     alignment and structure
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query246
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 3e-90
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 2e-79
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 7e-73
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 3e-70
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 1e-37
1w9y_A 319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 2e-37
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
 Score =  268 bits (687), Expect = 3e-90
 Identities = 60/237 (25%), Positives = 96/237 (40%), Gaps = 17/237 (7%)

Query: 13  AQTVLNCIDLS--SPDIQQSVSLLKQACLDCGFFYVVNHGISQEFMEEVFSQSKRFFKMP 70
           + + ++ +  S  + D  +    L  +    GF  + ++ + Q  ++     +K FF +P
Sbjct: 3   STSAIDPVSFSLYAKDFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALP 62

Query: 71  LNEKMKVLR-NEKHRGYTPVLDELLDPDTQVRGDYKEGYYIGVEVPEGDPESEKPFYGPN 129
           +  K +        RGY P   E          D KE +++G ++P G     +     N
Sbjct: 63  VETKKQYAGVKGGARGYIPFGVETAKGAD--HYDLKEFWHMGRDLPPGHR--FRAHMADN 118

Query: 130 VWPAPDCLPGWRETMERFQREALEVAKAVARIIALALDLDADFFDKPEMLGQAIATLRLL 189
           VW  P  +P ++  +         +   V   IA  L L+ DFF     +    + LRLL
Sbjct: 119 VW--PAEIPAFKHDVSWLYNSLDGMGGKVLEAIATYLKLERDFFK--PTVQDGNSVLRLL 174

Query: 190 HYEGQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKG 246
           HY     D       AGAH D   ITLL   E  GL++  DRD +   W  + P  G
Sbjct: 175 HYPPIPKDA--TGVRAGAHGDINTITLLLGAEEGGLEVL-DRDGQ---WLPINPPPG 225
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query246
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1w9y_A 319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
Probab=100.00  E-value=2e-52  Score=358.66  Aligned_cols=220  Identities=27%  Similarity=0.419  Sum_probs=186.7

Q ss_pred             CCCccceeeCCCc--chHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHHHhHhhCCCHHHHhhhccC-CCCcccccC
Q 025932           13 AQTVLNCIDLSSP--DIQQSVSLLKQACLDCGFFYVVNHGISQEFMEEVFSQSKRFFKMPLNEKMKVLRN-EKHRGYTPV   89 (246)
Q Consensus        13 ~~~~iPvIDls~~--~~~~~~~~l~~A~~~~Gff~l~~hgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~-~~~~GY~~~   89 (246)
                      ++.+||||||+..  .+.+++++|.+||++||||||+||||+.++++++++.+++||+||.|+|+++... ...+||++.
T Consensus         3 ~~~~iPvIDls~~~~~~~~~~~~l~~A~~~~GFf~v~nHGi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~Gy~~~   82 (312)
T 3oox_A            3 STSAIDPVSFSLYAKDFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYIPF   82 (312)
T ss_dssp             -CCSSCCEETHHHHHCHHHHHHHHHHHHHHHSEEEEESCCSCHHHHHHHHHHHHHHHTSCHHHHGGGBSSGGGTSEEECC
T ss_pred             CCCCCCeEEChHhcccHHHHHHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHhhhccCCCCccccccc
Confidence            4678999999853  4567899999999999999999999999999999999999999999999998774 458999998


Q ss_pred             cccccCCCCCCCCCcceeeeecccCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 025932           90 LDELLDPDTQVRGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDCLPGWRETMERFQREALEVAKAVARIIALALDLD  169 (246)
Q Consensus        90 ~~e~~~~~~~~~~d~~E~~~~~~~~~~~~~~~~~~~~~~n~~P~~~~~~~~~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~  169 (246)
                      +.+....  ....|++|.|.++.+.+.+.+..  ....+|.||.  .+++|++++++|+++|.+++.+||++|+++||++
T Consensus        83 g~e~~~~--~~~~D~kE~~~~~~~~~~~~~~~--~~~~~n~wP~--~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~  156 (312)
T 3oox_A           83 GVETAKG--ADHYDLKEFWHMGRDLPPGHRFR--AHMADNVWPA--EIPAFKHDVSWLYNSLDGMGGKVLEAIATYLKLE  156 (312)
T ss_dssp             CCCCSTT--SCSCCCCEEEEECCCCCTTCGGG--GTSCCCCCCT--TSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             cceecCC--CCCCCceeeeEeecCCCcCCcch--hccCCCCCCC--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            8776432  23579999999986543332211  1345799997  4899999999999999999999999999999999


Q ss_pred             cccccCcccccCcccceEecccCCCCCCCCCCccccccccccCceeEEeeCCCCceeEeeCCCCCCCCeEeCCCCCC
Q 025932          170 ADFFDKPEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKG  246 (246)
Q Consensus       170 ~~~~~~~~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~~~HtD~g~lTiL~qd~~~GLqv~~~~~~~~~~W~~V~p~~g  246 (246)
                      +++|.  ..+..+.+.||++||||++.+. .. +|+++|||+|+||||+||+++||||++++|    +|++|+|+||
T Consensus       157 ~~~f~--~~~~~~~~~lr~~~Ypp~~~~~-~~-~g~~~HtD~g~lTlL~qd~v~GLqV~~~~g----~W~~V~p~pg  225 (312)
T 3oox_A          157 RDFFK--PTVQDGNSVLRLLHYPPIPKDA-TG-VRAGAHGDINTITLLLGAEEGGLEVLDRDG----QWLPINPPPG  225 (312)
T ss_dssp             TTTTH--HHHTTCCCEEEEEEECCCSSCC-C---CEEEECCCSSEEEEECCTTSCEEEECTTS----CEEECCCCSS
T ss_pred             HHHHH--HHhcCCcceeeeEecCCCCCCc-CC-cCccceecCceEEEEeEcCcCceEEECCCC----cEEECCCCCC
Confidence            99998  5667778899999999987652 33 999999999999999999999999998876    4999999997
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 246
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 8e-31
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 4e-28
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 5e-26
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 2e-21
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Deacetoxycephalosporin C synthase
species: Streptomyces clavuligerus [TaxId: 1901]

 Score =  113 bits (284), Expect = 8e-31
 Identities = 27/230 (11%), Positives = 63/230 (27%), Gaps = 20/230 (8%)

Query: 20  IDLSSPDIQQSVSLLKQACLDCGFFYVVNHGISQEFMEEVFSQSKRFFKMPLNEKMKVLR 79
             L+           ++   D G FY+ + G++   ++        FF+     + + + 
Sbjct: 8   FSLAELQQGLHQDEFRRCLRDKGLFYLTDCGLTDTELKSAKDLVIDFFEHGSEAEKRAVT 67

Query: 80  NEKHR---GYTPVLDELLDPDTQVRGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDC 136
           +       G+T +  E     T                  G        Y          
Sbjct: 68  SPVPTMRRGFTGLESESTAQIT----------------NTGSYSDYSMCYSMGTADNLFP 111

Query: 137 LPGWRETMERFQREALEVAKAVARIIALALDLDADFFDKPEMLGQAIATLRLLHYEGQIS 196
              +     ++       ++AVAR +  A   + D   +  +  + +   R      +  
Sbjct: 112 SGDFERIWTQYFDRQYTASRAVAREVLRATGTEPDGGVEAFLDCEPLLRFRYFPQVPEHR 171

Query: 197 DPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKG 246
              +       H D  ++TL+     A   +    +     + D+     
Sbjct: 172 SAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAE-VGGAFTDLPYRPD 220
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query246
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d2csga1 417 Hypothetical protein YbiU {Salmonella typhimurium 88.16
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Isopenicillin N synthase
species: Emericella nidulans [TaxId: 162425]

Probab=100.00  E-value=4.5e-44  Score=307.29  Aligned_cols=226  Identities=21%  Similarity=0.303  Sum_probs=171.9

Q ss_pred             CCCCCccceeeCCCc------chHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHHHhHhhCCCHHHHhhhccCC---
Q 025932           11 AEAQTVLNCIDLSSP------DIQQSVSLLKQACLDCGFFYVVNHGISQEFMEEVFSQSKRFFKMPLNEKMKVLRNE---   81 (246)
Q Consensus        11 ~~~~~~iPvIDls~~------~~~~~~~~l~~A~~~~Gff~l~~hgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~---   81 (246)
                      +++.++||||||+..      .+.+++++|.+||+++|||||+||||+.+++.++.+.  .||.+|.|+|.++....   
T Consensus         1 s~s~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nHGI~~~~i~~~~~~--ff~~l~~eek~~~~~~~~~~   78 (329)
T d1odma_           1 SVSKANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKE--FHMSITPEEKWDLAIRAYNK   78 (329)
T ss_dssp             CCCBCCCCEEECGGGGSSCHHHHHHHHHHHHHHHHTTSEEEEESCCCCHHHHHHHHHH--HHHHCCHHHHHHHBCTTTCT
T ss_pred             CCCCCCCCcEEchhhcCCCHHHHHHHHHHHHHHHHcCeEEEEEeCCCCHHHHHHHHHH--hcccCCHHHHHhhccccccc
Confidence            467789999999831      2356789999999999999999999998888777653  35789999999987542   


Q ss_pred             CCcccccCcccccCCCCCCCCCcceeeeecccCCCCCCC--CCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHH
Q 025932           82 KHRGYTPVLDELLDPDTQVRGDYKEGYYIGVEVPEGDPE--SEKPFYGPNVWPAPDCLPGWRETMERFQREALEVAKAVA  159 (246)
Q Consensus        82 ~~~GY~~~~~e~~~~~~~~~~d~~E~~~~~~~~~~~~~~--~~~~~~~~n~~P~~~~~~~~~~~~~~y~~~~~~l~~~ll  159 (246)
                      ..+||.+.+....   ..+..+.++.+....+.+.+.+.  .....+.+|.||.+..+|+|++.+++|+++|.+|+..||
T Consensus        79 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~wP~~~~~p~fr~~~~~y~~~~~~la~~ll  155 (329)
T d1odma_          79 EHQDQVRAGYYLS---IPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALL  155 (329)
T ss_dssp             TCTTCSSSEEECC---BTTTBCCEEEEECCTTCCTTSHHHHTTCTTCCCCCCCCTTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCccccccccc---CCCccccceeeecccccccccccccccCCccccccCccccccchHHHHHHHHHHHhhhhheeeh
Confidence            2444444332221   11224555566555444333321  233456899999876789999999999999999999999


Q ss_pred             HHHHHhCCCCcccccCcccccCcccceEecccCCCCCC--------CCCCccccccccccCceeEEeeCCCCceeEeeCC
Q 025932          160 RIIALALDLDADFFDKPEMLGQAIATLRLLHYEGQISD--------PSKGMYGAGAHSDYGLITLLATDEVAGLQICKDR  231 (246)
Q Consensus       160 ~~l~~~Lgl~~~~~~~~~~~~~~~~~lr~~~Yp~~~~~--------~~~~~~~~~~HtD~g~lTiL~qd~~~GLqv~~~~  231 (246)
                      ++|+++||+++++|.......++.+.+|+++||+.+..        .+...+|+++|||+|+||||+||.++||||++++
T Consensus       156 ~~la~~Lgl~~~~f~~~~~~~~~~~~~~~l~y~~~~~~~~~~~~~~~~~~~~g~~~HtD~g~lTlL~qd~~~GLqv~~~~  235 (329)
T d1odma_         156 KGYALALGKEENFFARHFKPDDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAA  235 (329)
T ss_dssp             HHHHHHTTSCTTTTGGGCCTTTCCCEEEEEEECCCSSCCGGGCEECTTSCEEEEEEECCSSSEEEEEECSSCCEEEEETT
T ss_pred             hhhHhhcCccHHHHHHHhhccccchhhhccccccCCCCCchhccccccccccccccCCCccccceeecccceeeeeeccC
Confidence            99999999999999843333456777888888765421        1235789999999999999999999999999975


Q ss_pred             CCCCCCeEeCCCCCC
Q 025932          232 DAKPQLWEDVAPMKG  246 (246)
Q Consensus       232 ~~~~~~W~~V~p~~g  246 (246)
                           .|++|+|+||
T Consensus       236 -----~W~~v~~~~~  245 (329)
T d1odma_         236 -----GYQDIEADDT  245 (329)
T ss_dssp             -----EEEECCCCTT
T ss_pred             -----Cceeeccccc
Confidence                 3999999987
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d2csga1 b.82.2.12 (A:3-419) Hypothetical protein YbiU {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure