Citrus Sinensis ID: 025950

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-----
Protein Sequence
MDRYQRVEKPKAEAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKDLDTSSTGYQPPLPADQVKPWNEFEDEGEGSPRGRGRGRGGRGRGRGRGGDYNVDGWDGGRGFGGRGRGRGRGRSFRGRGWGYGSQSGGYYDYGELEAPPVGRGRGRGRARGRGRGRNPRSGGPFQAVGA
Secondary Structure (PSIPRED)
ccccEEEEcccccccccccEEEEccccccHHHHHHHHHHHccccccEEEEEEEcHHHHHHHHHHHHHHHHHcccEEEEEEEEEEEEEEEccccccccccEEEEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEccccccccccccEEEEccccHHHHHHHHHHHHHHcccccEEEEEEcHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEEEEEcccccccccEEEEEEEcEEEEEEEccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccEEcc
Coil and Loop (DISEMBL)
mdryqrvekpkaeapineneiRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAglhqntsigstditdmwepleegllplettrHVSMITITLSkkdldtsstgyqpplpadqvkpwnefedegegsprgrgrgrggrgrgrgrggdynvdgwdggrgfggrgrgrgrgrsfrgrgwgygsqsggyydygeleappvgrgrgrgrargrgrgrnprsggpfqavga
Flexible Loop (DISEMBL)
mdryqrvekpkaeapineneirittqgrmRNYITYATtllqekgsnEIVLKAMGRAINKTVMIAELIKRRiaglhqntsigstditdMWEPLEEGLLPLETTRHVSMITITlskkdldtsstgyqpplpadqvkpWNEFEdegegsprgrgrgrggrgrgrgrggdynvdgwdggrgfggrgrgrgrgrsfrgrgwgygsqsggyydygeleappvgrgrgrgrargrgrgrnprsggpfqavga
Low Complexity Region (SEG)
MDRYQRVEKPKAEAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWepleegllpleTTRHVSMITITLSKKDLDTSSTGYQPPLPADQVKPWNEFEDEGEGSPrgrgrgrggrgrgrgrggDYNVdgwdggrgfggrgrgrgrgrsfrgrgwgygsqsggyydygELEAPPVgrgrgrgrargrgrgrnprsggPFQAVGA
Disordered region (IsUnstruct)
********************IRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITL*************************************************************************************Y*****GYYDY*************************************
Disordered Region (DISOPRED)
**RYQRVEKP*AE*PINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKDLDTSSTGYQ**L*********************************************************************************************************************
Disordered Region (DISEMBL)
************EAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKDLDTSSTGYQPPLPADQVKPWNE************************RGGDYNVDGWDGGRGFGGRGRGRGRGRSFRGRGWGYGSQSGGYYDYGELEAPPV*****************************
Disordered Region (DISPRO)
**RYQRVEKPKAEAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKDLDTSSTGYQPPLPADQV***************************************************************GYGSQSGGYYDYGELEAPPVG**********RGRGRNPRSGGPFQAVG*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDRYQRVEKPKAEAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKDLDTSSTGYQPPLPADQVKPWNEFEDEGEGSPRGRGRGRGGRGRGRGRGGDYNVDGWDGGRGFGGRGRGRGRGRSFRGRGWGYGSQSGGYYDYGELEAPPVGRGRGRGRARGRGRGRNPRSGGPFQAVGA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	245	2.2.26 [Sep-21-2011]
Q99JH1	163	Ribonuclease P protein su	yes	no	0.518	0.779	0.345	4e-15
Q8N5L8	163	Ribonuclease P protein su	yes	no	0.485	0.730	0.355	2e-14
Q9BUL9	199	Ribonuclease P protein su	no	no	0.448	0.552	0.35	1e-13
Q5PPN2	199	Ribonuclease P protein su	no	no	0.440	0.542	0.330	2e-13
Q91WE3	199	Ribonuclease P protein su	no	no	0.436	0.537	0.333	3e-13
Q2KIR4	163	Ribonuclease P protein su	no	no	0.481	0.723	0.341	4e-13

>sp|Q99JH1|RP25L_MOUSE Ribonuclease P protein subunit p25-like protein OS=Mus musculus GN=Rpp25l PE=2 SV=1

 Score = 81.6 bits (200), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 68/136 (50%), Gaps = 9/136 (6%)

Query: 1   MDRYQRV-------EKPKAEAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAM 53
           M++Y+R          P  + P +  E+R+    ++RN +  A   L+   +  +V    
Sbjct: 1   MEQYRRAGSVELPASSPMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSTRHVVFSGS 60

Query: 54  GRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPL--EEGLLPLETTRHVSMITIT 111
           GRA  K V  AE++KRR+ GLHQ T +      D W P   + GL PL   RHV  + + 
Sbjct: 61  GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVL 120

Query: 112 LSKKDLDTSSTGYQPP 127
           LS+  LD S  GYQPP
Sbjct: 121 LSRDPLDPSECGYQPP 136

May be a component of ribonuclease P or MRP.
Mus musculus (taxid: 10090)

>sp|Q8N5L8|RP25L_HUMAN Ribonuclease P protein subunit p25-like protein OS=Homo sapiens GN=RPP25L PE=1 SV=1

 Score = 79.7 bits (195), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 9   KPKAEAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIK 68
            P  + P +  E+R+    ++RN +  A   L+   +  +V    GRA  K V  AE++K
Sbjct: 16  SPMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGSGRAAGKAVSCAEIVK 75

Query: 69  RRIAGLHQNTSIGSTDITDMWEPL--EEGLLPLETTRHVSMITITLSKKDLDTSSTGYQP 126
           RR+ GLHQ T +      D W P   + GL PL   RHV  + + LS+  LD +  GYQP
Sbjct: 76  RRVPGLHQLTKLRFLQTEDSWVPASPDTGLDPLTVRRHVPAVWVLLSRDPLDPNECGYQP 135

Query: 127 P 127
           P
Sbjct: 136 P 136

May be a component of ribonuclease P or MRP.

Homo sapiens (taxid: 9606)

>sp|Q9BUL9|RPP25_HUMAN Ribonuclease P protein subunit p25 OS=Homo sapiens GN=RPP25 PE=1 SV=1

 Score = 77.0 bits (188), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 63/120 (52%), Gaps = 10/120 (8%)

Query: 20  EIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTS 79
            +R+    ++RN + +AT  + +  +  IV    GRA  KTV  AE++KRR+AGLHQ T 
Sbjct: 37  HMRVKEGSKIRNLMAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTR 96

Query: 80  IGSTDITDMWEPLE----EGLLP------LETTRHVSMITITLSKKDLDTSSTGYQPPLP 129
           +    + ++W+ L     +G  P      L   ++V  + I LSK  LD    GYQPP P
Sbjct: 97  LRYRSVREVWQSLPPGPTQGQTPGEPAASLSVLKNVPGLAILLSKDALDPRQPGYQPPNP 156

Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of RNase MRP. This subunit binds to RNA.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: 5

>sp|Q5PPN2|RPP25_RAT Ribonuclease P protein subunit p25 OS=Rattus norvegicus GN=Rpp25 PE=2 SV=1

 Score = 75.9 bits (185), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 10/118 (8%)

Query: 20  EIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTS 79
            +R+    ++RN + +AT  + +  +  IV    GRA  KTV  AE++KRR+AGLHQ T 
Sbjct: 37  HMRVKEGSKIRNLLAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTR 96

Query: 80  IGSTDITDMWEPL----------EEGLLPLETTRHVSMITITLSKKDLDTSSTGYQPP 127
           +    + ++W+ L           +    L   ++V  + I LSK  LD    GYQPP
Sbjct: 97  LRYRSVREVWQSLPPGPTPGQTPSDPAASLSVLKNVPSLAILLSKDALDPRQLGYQPP 154

Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of RNase MRP. This subunit binds to RNA.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: 5

>sp|Q91WE3|RPP25_MOUSE Ribonuclease P protein subunit p25 OS=Mus musculus GN=Rpp25 PE=2 SV=1

 Score = 75.9 bits (185), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 60/117 (51%), Gaps = 10/117 (8%)

Query: 21  IRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSI 80
           +R+    ++RN + +AT  + +  +  IV    GRA  KTV  AE++KRR+AGLHQ T +
Sbjct: 38  MRVKEGSKIRNLLAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRL 97

Query: 81  GSTDITDMWEPL----------EEGLLPLETTRHVSMITITLSKKDLDTSSTGYQPP 127
               + ++W+ L           +    L   ++V  + I LSK  LD    GYQPP
Sbjct: 98  RYRSVREVWQSLPPGPTPGQTPSDPAASLSVLKNVPSLAILLSKDALDPRQLGYQPP 154

Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of RNase MRP. This subunit binds to RNA.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: 5

>sp|Q2KIR4|RP25L_BOVIN Ribonuclease P protein subunit p25-like protein OS=Bos taurus GN=RPP25L PE=2 SV=1

 Score = 75.1 bits (183), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 61/120 (50%), Gaps = 2/120 (1%)

Query: 10  PKAEAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKR 69
           P  + P +  E+R+    ++RN +  A   L+   +  +V    GRA  K V  AE++KR
Sbjct: 17  PMPQLPPDTLEMRVRAGSKIRNLLGLALERLEGGSARHVVFSGSGRAAGKAVSCAEIVKR 76

Query: 70  RIAGLHQNTSIGSTDITDMWEPL--EEGLLPLETTRHVSMITITLSKKDLDTSSTGYQPP 127
           R+ GL+Q T +      D W P   + GL PL    HV  + + LS+  LD +  GYQPP
Sbjct: 77  RVPGLYQLTKLRFLQTEDSWVPTSPDTGLDPLTVRSHVPAVWVLLSRDPLDPNEYGYQPP 136


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.139    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,697,413
Number of Sequences: 539616
Number of extensions: 6031473
Number of successful extensions: 52969
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 764
Number of HSP's that attempted gapping in prelim test: 20202
Number of HSP's gapped (non-prelim): 11585
length of query: 245
length of database: 191,569,459
effective HSP length: 114
effective length of query: 131
effective length of database: 130,053,235
effective search space: 17036973785
effective search space used: 17036973785
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)

May be a component of ribonuclease P or MRP.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
357464479	351	Ribonuclease P protein subunit p25 [Medi	0.865	0.603	0.811	5e-79
449448448	254	PREDICTED: ribonuclease P protein subuni	0.881	0.850	0.832	2e-76
255585648	257	conserved hypothetical protein [Ricinus	1.0	0.953	0.731	2e-75
356516323	241	PREDICTED: alba-like protein C9orf23 hom	0.869	0.883	0.819	2e-74
296082548	282	unnamed protein product [Vitis vinifera]	0.995	0.865	0.707	3e-74
356509014	261	PREDICTED: uncharacterized protein LOC10	0.869	0.816	0.807	6e-74
225438471	255	PREDICTED: uncharacterized protein LOC10	0.995	0.956	0.707	7e-74
357464475	245	Ribonuclease P protein subunit p25 [Medi	0.861	0.861	0.741	5e-73
84468342	248	hypothetical protein [Trifolium pratense	0.877	0.866	0.783	1e-72
225460634	259	PREDICTED: uncharacterized protein LOC10	0.6	0.567	0.884	1e-70

>gi|357464479|ref|XP_003602521.1| Ribonuclease P protein subunit p25 [Medicago truncatula] gi|355491569|gb|AES72772.1| Ribonuclease P protein subunit p25 [Medicago truncatula]

 Score =  300 bits (767), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 176/217 (81%), Positives = 186/217 (85%), Gaps = 5/217 (2%)

Query: 1   MDRYQRVEKPKAEAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKT 60
           MDRYQRVEKPKA++PINENEIRITTQGRMRNYITYATTL QEKGS+EIV+KAMGRAINKT
Sbjct: 107 MDRYQRVEKPKADSPINENEIRITTQGRMRNYITYATTLFQEKGSDEIVVKAMGRAINKT 166

Query: 61  VMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKDLDTS 120
           VMI ELIKRRI GLHQNT IGSTDITD WEPLEEGLLPLETTRHVSMITITLSKK+LDTS
Sbjct: 167 VMITELIKRRIVGLHQNTQIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELDTS 226

Query: 121 STGYQPPLPADQVKPWNEFEDEGEGSPRGRGRGRGGRGRGRGRGGDYN-----VDGWDGG 175
           STGYQPPLPADQVKP NE+EDEGEGSPR RGRGRG         G YN      DGWDGG
Sbjct: 227 STGYQPPLPADQVKPLNEYEDEGEGSPRMRGRGRGRGRGRGRGRGMYNGGMEYGDGWDGG 286

Query: 176 RGFGGRGRGRGRGRSFRGRGWGYGSQSGGYYDYGELE 212
           RG+GGRGRGR  G +FRGRG GYG+Q  G YDYGE +
Sbjct: 287 RGYGGRGRGRAWGHAFRGRGRGYGAQPVGQYDYGEYD 323

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448448|ref|XP_004141978.1| PREDICTED: ribonuclease P protein subunit p25-like protein-like [Cucumis sativus] gi|449497693|ref|XP_004160481.1| PREDICTED: ribonuclease P protein subunit p25-like protein-like [Cucumis sativus]

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 184/221 (83%), Positives = 193/221 (87%), Gaps = 5/221 (2%)

Query: 1   MDRYQRVEKPKAE-APINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINK 59
           MDRYQRVEKPK+E  PINENEIRITTQGRMRNYITYATTLLQEKGSNEIV+K MGRAINK
Sbjct: 1   MDRYQRVEKPKSENTPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVVKGMGRAINK 60

Query: 60  TVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKDLDT 119
           TVMIAELIKRRI GLHQNT+IGSTDITDMWEPLEEGLLPLETTRHVSM++ITLSKK+LDT
Sbjct: 61  TVMIAELIKRRIVGLHQNTAIGSTDITDMWEPLEEGLLPLETTRHVSMVSITLSKKELDT 120

Query: 120 SSTGYQPPLPADQVKPWNEFEDEGEGSPRGRGRGRGGRGRGRGRG----GDYNVDGWDGG 175
           SSTGYQ PLP DQVKPWNEFEDEG+GSPR RGRGRG              +Y  DGWDGG
Sbjct: 121 SSTGYQSPLPVDQVKPWNEFEDEGDGSPRIRGRGRGRGRGRGRGNYNGPSEYQGDGWDGG 180

Query: 176 RGFGGRGRGRGRGRSFRGRGWGYGSQSGGYYDYGELEAPPV 216
           RGFG RGRGRGRGR+FRGRG GYG QSGGYYDYGE  APPV
Sbjct: 181 RGFGPRGRGRGRGRAFRGRGRGYGRQSGGYYDYGEPMAPPV 221

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585648|ref|XP_002533510.1| conserved hypothetical protein [Ricinus communis] gi|223526634|gb|EEF28879.1| conserved hypothetical protein [Ricinus communis]

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 188/257 (73%), Positives = 195/257 (75%), Gaps = 12/257 (4%)

Query: 1   MDRYQRVEKPKAEAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKT 60
           MDRYQRVEK KA+ PINENEIRITTQGRMRNYITYATTLL EKGS+EIVLKAMGRAINKT
Sbjct: 1   MDRYQRVEKAKADTPINENEIRITTQGRMRNYITYATTLLLEKGSDEIVLKAMGRAINKT 60

Query: 61  VMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKDLDTS 120
           VMIAELIKRR+ GLHQNTSI STDITD WEPLEEGLLPLETTRHVSM+TIT SKK+LDTS
Sbjct: 61  VMIAELIKRRVVGLHQNTSITSTDITDTWEPLEEGLLPLETTRHVSMLTITFSKKELDTS 120

Query: 121 STGYQPPLPADQVKPWNEFEDEGEGS-------PRGRGRGRGGRGRGRGRGGDYNVDGWD 173
           STGYQPPLP DQVKP NEFEDEGEGS         G GRGRG         G+YN DGWD
Sbjct: 121 STGYQPPLPVDQVKPLNEFEDEGEGSLRMRGRGRGGWGRGRGRNRGNFNGAGEYNGDGWD 180

Query: 174 ----GGRGFGGRGRGRGRGRSFRGRGWGYGSQSGGYYDYGELEAPPV-GRGRGRGRARGR 228
                     GRGRGR      RGRG G+G QS GYYDYGE EA PV GRG GR R RGR
Sbjct: 181 GGRGYSGRGQGRGRGRFFQGRGRGRGRGFGGQSSGYYDYGESEALPVPGRGHGRWRGRGR 240

Query: 229 GRGRNPRSGGPFQAVGA 245
             GR  RS GP QA  A
Sbjct: 241 SGGRGFRSDGPIQASAA 257

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516323|ref|XP_003526845.1| PREDICTED: alba-like protein C9orf23 homolog [Glycine max]

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 177/216 (81%), Positives = 185/216 (85%), Gaps = 3/216 (1%)

Query: 1   MDRYQRVEKPKAEAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKT 60
           MDRYQRVEKPKAE PINENEIR+TTQGRMRNYITYATTLLQEKGS+EIVLKAMGRAINKT
Sbjct: 1   MDRYQRVEKPKAETPINENEIRVTTQGRMRNYITYATTLLQEKGSSEIVLKAMGRAINKT 60

Query: 61  VMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKDLDTS 120
           VMIAELIKRRI GLHQNT IGSTDITD WEPLEEGLLPLETTRHVSMITITLSKK+LDTS
Sbjct: 61  VMIAELIKRRIVGLHQNTQIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELDTS 120

Query: 121 STGYQPPLPADQVKPWNEFEDEGEGSPRGRGRGRGGRGRGRG---RGGDYNVDGWDGGRG 177
           S GYQ PLP DQVKP NE+E+EGEGSPR RGRGRG           GG    D WDGGRG
Sbjct: 121 SAGYQHPLPVDQVKPLNEYEEEGEGSPRMRGRGRGRGRGRGRGFYNGGMEYGDDWDGGRG 180

Query: 178 FGGRGRGRGRGRSFRGRGWGYGSQSGGYYDYGELEA 213
           +GGRGRGR RGR+FRGRG GYG Q  GYYDYGE +A
Sbjct: 181 YGGRGRGRARGRAFRGRGRGYGVQPVGYYDYGEYDA 216

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082548|emb|CBI21553.3| unnamed protein product [Vitis vinifera]

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 181/256 (70%), Positives = 192/256 (75%), Gaps = 12/256 (4%)

Query: 1   MDRYQRVEKPKAEAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKT 60
           MDRYQRVEKP+ E PINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKT
Sbjct: 28  MDRYQRVEKPRTETPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKT 87

Query: 61  VMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKDLDTS 120
           VMI+ELIKRRI GLHQNTSIGSTDITDMWEPLE+GLLPLETTRHVSMITITLSKK+LDTS
Sbjct: 88  VMISELIKRRIVGLHQNTSIGSTDITDMWEPLEDGLLPLETTRHVSMITITLSKKELDTS 147

Query: 121 STGYQPPLPADQVKPWNEFEDEGEGSP-----RGRGRGRGGRGRGRGRGGDYN------V 169
           STGYQPP+P DQVKP NE E EG+ SP             GRG   G GG+YN       
Sbjct: 148 STGYQPPIPVDQVKPLNELEYEGD-SPGMRGRGRGRGRGRGRGNYNGVGGEYNNGDGWDG 206

Query: 170 DGWDGGRGFGGRGRGRGRGRSFRGRGWGYGSQSGGYYDYGELEAPPVGRGRGRGRARGRG 229
               GGRG G       RGR     G     +SGGYYDYG+ E P  GRGRGR R RGRG
Sbjct: 207 GRGFGGRGRGRGRGRGFRGRGRGYGGGDMQYESGGYYDYGDSEVPAQGRGRGRSRGRGRG 266

Query: 230 RGRNPRSGGPFQAVGA 245
           RGRN R+ GP QA+ A
Sbjct: 267 RGRNFRTEGPPQAIAA 282

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509014|ref|XP_003523247.1| PREDICTED: uncharacterized protein LOC100792158 [Glycine max]

 Score =  283 bits (723), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 176/218 (80%), Positives = 187/218 (85%), Gaps = 5/218 (2%)

Query: 1   MDRYQRVEKPKAEAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKT 60
           MDRYQRVEKPKAE+PINENEIR+T+QGR RNYITYATTLLQEKGS+EIVLKAMGRAINKT
Sbjct: 1   MDRYQRVEKPKAESPINENEIRVTSQGRTRNYITYATTLLQEKGSSEIVLKAMGRAINKT 60

Query: 61  VMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKDLDTS 120
           VMIAELIKRRI GLHQNT IGSTDITD WEPLEEGLLPLETTRHVSMITITLSKK+LDTS
Sbjct: 61  VMIAELIKRRIVGLHQNTQIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELDTS 120

Query: 121 STGYQPPLPADQVKPWNEFEDEGEGSPRGRGRGRGGRGRGRG---RGGDYNVDGWDGGRG 177
           STGYQPPLP DQVKP NE+++EGEGSPR RGRGRG           GG    DGWDGGRG
Sbjct: 121 STGYQPPLPVDQVKPLNEYDEEGEGSPRIRGRGRGRGRGRGRGFYNGGMEYGDGWDGGRG 180

Query: 178 FGGRGRGRGRGRSF--RGRGWGYGSQSGGYYDYGELEA 213
           +GGRGRGR RG +F  RGRG GYG Q  GYYDYGE +A
Sbjct: 181 YGGRGRGRARGHAFRGRGRGRGYGVQPVGYYDYGEYDA 218

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438471|ref|XP_002277849.1| PREDICTED: uncharacterized protein LOC100254260 [Vitis vinifera] gi|147856397|emb|CAN82465.1| hypothetical protein VITISV_002662 [Vitis vinifera]

 Score =  283 bits (723), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 181/256 (70%), Positives = 192/256 (75%), Gaps = 12/256 (4%)

Query: 1   MDRYQRVEKPKAEAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKT 60
           MDRYQRVEKP+ E PINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKT
Sbjct: 1   MDRYQRVEKPRTETPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKT 60

Query: 61  VMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKDLDTS 120
           VMI+ELIKRRI GLHQNTSIGSTDITDMWEPLE+GLLPLETTRHVSMITITLSKK+LDTS
Sbjct: 61  VMISELIKRRIVGLHQNTSIGSTDITDMWEPLEDGLLPLETTRHVSMITITLSKKELDTS 120

Query: 121 STGYQPPLPADQVKPWNEFEDEGEGSP-----RGRGRGRGGRGRGRGRGGDYN------V 169
           STGYQPP+P DQVKP NE E EG+ SP             GRG   G GG+YN       
Sbjct: 121 STGYQPPIPVDQVKPLNELEYEGD-SPGMRGRGRGRGRGRGRGNYNGVGGEYNNGDGWDG 179

Query: 170 DGWDGGRGFGGRGRGRGRGRSFRGRGWGYGSQSGGYYDYGELEAPPVGRGRGRGRARGRG 229
               GGRG G       RGR     G     +SGGYYDYG+ E P  GRGRGR R RGRG
Sbjct: 180 GRGFGGRGRGRGRGRGFRGRGRGYGGGDMQYESGGYYDYGDSEVPAQGRGRGRSRGRGRG 239

Query: 230 RGRNPRSGGPFQAVGA 245
           RGRN R+ GP QA+ A
Sbjct: 240 RGRNFRTEGPPQAIAA 255

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464475|ref|XP_003602519.1| Ribonuclease P protein subunit p25 [Medicago truncatula] gi|355491567|gb|AES72770.1| Ribonuclease P protein subunit p25 [Medicago truncatula]

 Score =  280 bits (715), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 166/224 (74%), Positives = 174/224 (77%), Gaps = 13/224 (5%)

Query: 1   MDRYQRVEKPKAEAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKT 60
           MDRYQRVEKPKA++PINENEIRITTQGRMRNYITYATTL QEKG+ EIVLKAMGRAINKT
Sbjct: 1   MDRYQRVEKPKADSPINENEIRITTQGRMRNYITYATTLFQEKGTEEIVLKAMGRAINKT 60

Query: 61  VMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKDLDTS 120
           V I ELIKRRI GLHQNT IGSTDITD WEPLEEGLLPLETTRHVSMITITLSKK+LDTS
Sbjct: 61  VTITELIKRRIVGLHQNTIIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELDTS 120

Query: 121 STGYQPPLPADQVKPWNEFEDEGEGSPRGRGRGRGGRGRGRGRGGDYNVDGWDGGRGFGG 180
           STGYQPPLPADQVKP NE+E+EGEGSPR RGRGRG         G YN     G     G
Sbjct: 121 STGYQPPLPADQVKPLNEYEEEGEGSPRMRGRGRGRGRGRGRGRGMYN----GGMEYGDG 176

Query: 181 RGRGRGRGRSFRGRGW---------GYGSQSGGYYDYGELEAPP 215
              GRG G   RGR W         GYG+Q  GYYD GE +APP
Sbjct: 177 YDGGRGYGGRGRGRAWGRAFRGRGRGYGAQPVGYYDNGEYDAPP 220

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|84468342|dbj|BAE71254.1| hypothetical protein [Trifolium pratense]

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 174/222 (78%), Positives = 186/222 (83%), Gaps = 7/222 (3%)

Query: 1   MDRYQRVEKPKAEAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKT 60
           MDRYQRVEKPKA+ PINENEIRITTQGRMRNYITYATTL QEKG++EIVLKAMGRAINKT
Sbjct: 1   MDRYQRVEKPKADGPINENEIRITTQGRMRNYITYATTLFQEKGTDEIVLKAMGRAINKT 60

Query: 61  VMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKDLDTS 120
           V I ELIKRRI GLHQNT IGSTDITD WEPLEEGLLPLETTRHVSMITITLSKK+LDTS
Sbjct: 61  VTITELIKRRIVGLHQNTVIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELDTS 120

Query: 121 STGYQPPLPADQVKPWNEFEDEGEGSPRGRGRGRGGRGRGRGRGGDYNVDGWD------- 173
           STGYQPPLPADQVKP NE+E++GEGSPR RGRGRG         G YN  G +       
Sbjct: 121 STGYQPPLPADQVKPLNEYEEDGEGSPRMRGRGRGRGRGRGRGRGMYNNGGMEYGGDGWD 180

Query: 174 GGRGFGGRGRGRGRGRSFRGRGWGYGSQSGGYYDYGELEAPP 215
           GGRG+GGRGRGR  GR+FRGRG GYG+Q  GYYD GE +APP
Sbjct: 181 GGRGYGGRGRGRAWGRAFRGRGRGYGAQPAGYYDNGEYDAPP 222

Source: Trifolium pratense

Species: Trifolium pratense

Genus: Trifolium

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460634|ref|XP_002264932.1| PREDICTED: uncharacterized protein LOC100265751 [Vitis vinifera] gi|296081198|emb|CBI18224.3| unnamed protein product [Vitis vinifera]

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 130/147 (88%), Positives = 139/147 (94%)

Query: 1   MDRYQRVEKPKAEAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKT 60
           MDRYQRVEKP+ E PINENEIRIT QGRMRNYITYATTLLQ+KGS+EI LKAMGRAINKT
Sbjct: 1   MDRYQRVEKPRPETPINENEIRITAQGRMRNYITYATTLLQDKGSDEIALKAMGRAINKT 60

Query: 61  VMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKDLDTS 120
           VMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVS+I ITLSKK+LD S
Sbjct: 61  VMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSVIAITLSKKELDIS 120

Query: 121 STGYQPPLPADQVKPWNEFEDEGEGSP 147
           STGYQPP+PADQV+PW E++ EGEGSP
Sbjct: 121 STGYQPPIPADQVRPWTEYDYEGEGSP 147

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
TAIR|locus:2204400	350	AT1G76010 [Arabidopsis thalian	0.6	0.42	0.695	2.3e-48
TAIR|locus:2198551	315	AT1G20220 [Arabidopsis thalian	0.6	0.466	0.682	1.6e-47
TAIR|locus:2077547	405	AT3G07030 [Arabidopsis thalian	0.551	0.333	0.6	5.5e-38
DICTYBASE|DDB_G0281409	369	drpp25 "RNase MRP protein subu	0.542	0.360	0.374	2.3e-16
UNIPROTKB|E1BQE8	164	RPP25 "Uncharacterized protein	0.534	0.798	0.295	5.4e-15
RGD|1306576	163	Rpp25l "ribonuclease P/MRP 25	0.518	0.779	0.330	6.2e-14
MGI|MGI:1917211	163	Rpp25l "ribonuclease P/MRP 25	0.518	0.779	0.330	7.9e-14
UNIPROTKB|Q8N5L8	163	RPP25L "Ribonuclease P protein	0.481	0.723	0.325	2.7e-13
UNIPROTKB|F1SEB9	163	RPP25L "Uncharacterized protei	0.481	0.723	0.325	2.7e-13
UNIPROTKB|E2R227	163	LOC486757 "Uncharacterized pro	0.481	0.723	0.325	3.4e-13

TAIR|locus:2204400 AT1G76010 [Arabidopsis thaliana (taxid:3702)]

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 103/148 (69%), Positives = 115/148 (77%)

Query:     1 MDRYQRVEKPKAEAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKT 60
             MD+YQRV KPKA+ PI+ NEIRIT+QGR RNYITYA TLLQ+KGS E+V KAMGRAINKT
Sbjct:     1 MDKYQRVVKPKADTPIDANEIRITSQGRARNYITYAMTLLQDKGSTEVVFKAMGRAINKT 60

Query:    61 VMIAELIKRRIAGLHQNTSIGSTDITDMWXXXXXXXXXXXTTRHVSMITITLSKKDLDTS 120
             V I ELIKRRI  LHQNTSIGSTDITD W           TTRHVSMITITLSK +L+TS
Sbjct:    61 VTIVELIKRRIPDLHQNTSIGSTDITDTWEPTEEGLLPLETTRHVSMITITLSKIELNTS 120

Query:   121 STGYQPPLPADQVKPWNEFEDEG-EGSP 147
             S GYQ P+P + VKP  + + EG EGSP
Sbjct:   121 SVGYQCPIPIELVKPMGDIDYEGREGSP 148

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2198551 AT1G20220 [Arabidopsis thaliana (taxid:3702)]

 Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
 Identities = 101/148 (68%), Positives = 113/148 (76%)

Query:     1 MDRYQRVEKPKAEAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKT 60
             MD+YQRVEKPKA+ PI ENEIRIT+ GR RNYITYA  LLQE  SNE++ KAMGRAINK+
Sbjct:     1 MDKYQRVEKPKADTPIAENEIRITSMGRARNYITYAMALLQENKSNEVIFKAMGRAINKS 60

Query:    61 VMIAELIKRRIAGLHQNTSIGSTDITDMWXXXXXXXXXXXTTRHVSMITITLSKKDLDTS 120
             V I ELIKRRI GLHQ TSIGSTDITD W           TTRHVSMITITLSK+ L+TS
Sbjct:    61 VTIVELIKRRIPGLHQITSIGSTDITDTWEPTEEGLQTIETTRHVSMITITLSKEQLNTS 120

Query:   121 STGYQPPLPADQVKPWNEFEDEGE-GSP 147
             S GYQ P+P + VKP  E + EG+ GSP
Sbjct:   121 SVGYQCPIPIEMVKPLAEIDYEGQDGSP 148

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2077547 AT3G07030 [Arabidopsis thaliana (taxid:3702)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 81/135 (60%), Positives = 101/135 (74%)

Query:     1 MDRYQRVEKPKAEAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKT 60
             MDRYQRV KPK E+PINENEIRIT++G +RNYI+YAT+LLQEK   +IVLKAMG+AI+KT
Sbjct:     1 MDRYQRVAKPKPESPINENEIRITSKGLIRNYISYATSLLQEKSVKDIVLKAMGQAISKT 60

Query:    61 VMIAELIKRRIAGLHQNTSIGSTDITDMWXXXXXXXXXXXTTRHVSMITITLSKKDLDTS 120
             V I+E++K +I GLHQ+ +I S  ITD+W            TRHVSMI+ITLS  +L+  
Sbjct:    61 VAISEILKNKIPGLHQDIAISSISITDVWEPTEEGLFPVELTRHVSMISITLSLSELNKD 120

Query:   121 STGYQPPLPADQVKP 135
             S GYQ P  +DQ KP
Sbjct:   121 SPGYQAPAQSDQSKP 135

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

DICTYBASE|DDB_G0281409 drpp25 "RNase MRP protein subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 207 (77.9 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 52/139 (37%), Positives = 76/139 (54%)

Query:     1 MDRYQRVEKPKAEAPINENEIRIT-TQGRMRNYITYATTLLQEKGSNEIVLKAMG-RAIN 58
             MD+Y RV +   +     NE+RI     ++ + I Y   L   K  + I++KA+G + I+
Sbjct:     1 MDKYYRVPRTY-DNDTEANEVRIGGVHSQVSSSIEYGLNLFN-KPHDSIIVKAIGSKMIS 58

Query:    59 KTVMIAELIKRRIAGLHQNTSIGSTDITDMWXXXXXXXXXXXTTRHVSMITITLSKKDLD 118
             K +  AE+IK R+ GLHQ T IG+T+I   +            ++  + I ITLSK  LD
Sbjct:    59 KAIFTAEIIKLRVPGLHQITEIGTTEIVTQYMPKEEGLDKVEISKKSAFIKITLSKTPLD 118

Query:   119 TSSTGYQPPLPAD--QVKP 135
             T++ GYQPPLP    Q KP
Sbjct:   119 TTNPGYQPPLPESETQKKP 137

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|E1BQE8 RPP25 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 42/142 (29%), Positives = 75/142 (52%)

Query:     1 MDRYQRVEKPKAEAPIN-EN------EIRITTQGRMRNYITYATTLLQEKGSNEIVLKAM 53
             M+ +++V   + E+P+   N      E+++    ++RN +++A   ++ KGS +IV    
Sbjct:     1 MENFRKVRTSEEESPLPFPNLPPGVVEMKVKEGSKIRNLMSFAMAQMELKGSRQIVFSGC 60

Query:    54 GRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWXXXX----XXXXXXXTTRHVSMIT 109
             GRA+ KT+   E++KR++ GLHQ T +    + ++W                 ++V  I 
Sbjct:    61 GRAVTKTITCVEIMKRKLGGLHQVTKVRYKTLLEVWENQDPLPGGAAQNLTVHKNVPSIC 120

Query:   110 ITLSKKDLDTSSTGYQPPLPAD 131
             I LS+  LD + TGYQPP P +
Sbjct:   121 ILLSRDPLDPNQTGYQPPEPRE 142

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

RGD|1306576 Rpp25l "ribonuclease P/MRP 25 subunit-like" [Rattus norvegicus (taxid:10116)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 45/136 (33%), Positives = 65/136 (47%)

Query:     1 MDRYQR---VEKPKA----EAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAM 53
             M+ Y+R   VE P +    + P +  E+R+    ++RN +  A   L+   +  +V    
Sbjct:     1 MEHYRRAGSVELPASSPMPQLPPDTLEMRVRDGSKIRNLLGLALARLEGGSTRHVVFSGS 60

Query:    54 GRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWXXXXXXXXXXXTT--RHVSMITIT 111
             GRA  K V  AE++KRR+ GLHQ T +      D W            T  RHV  + + 
Sbjct:    61 GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVL 120

Query:   112 LSKKDLDTSSTGYQPP 127
             LS+  LD S  GYQPP
Sbjct:   121 LSRDPLDPSECGYQPP 136

GO:0003676 "nucleic acid binding" evidence=IEA

MGI|MGI:1917211 Rpp25l "ribonuclease P/MRP 25 subunit-like" [Mus musculus (taxid:10090)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 45/136 (33%), Positives = 66/136 (48%)

Query:     1 MDRYQR---VEKPKA----EAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAM 53
             M++Y+R   VE P +    + P +  E+R+    ++RN +  A   L+   +  +V    
Sbjct:     1 MEQYRRAGSVELPASSPMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSTRHVVFSGS 60

Query:    54 GRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWXXXXXXXXXXXTT--RHVSMITIT 111
             GRA  K V  AE++KRR+ GLHQ T +      D W            T  RHV  + + 
Sbjct:    61 GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVL 120

Query:   112 LSKKDLDTSSTGYQPP 127
             LS+  LD S  GYQPP
Sbjct:   121 LSRDPLDPSECGYQPP 136

GO:0003674 "molecular_function" evidence=ND

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8N5L8 RPP25L "Ribonuclease P protein subunit p25-like protein" [Homo sapiens (taxid:9606)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 39/120 (32%), Positives = 57/120 (47%)

Query:    10 PKAEAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKR 69
             P  + P +  E+R+    ++RN +  A   L+   +  +V    GRA  K V  AE++KR
Sbjct:    17 PMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGSGRAAGKAVSCAEIVKR 76

Query:    70 RIAGLHQNTSIGSTDITDMWXXXXXXXXXXXTT--RHVSMITITLSKKDLDTSSTGYQPP 127
             R+ GLHQ T +      D W            T  RHV  + + LS+  LD +  GYQPP
Sbjct:    77 RVPGLHQLTKLRFLQTEDSWVPASPDTGLDPLTVRRHVPAVWVLLSRDPLDPNECGYQPP 136

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1SEB9 RPP25L "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 39/120 (32%), Positives = 57/120 (47%)

Query:    10 PKAEAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKR 69
             P  + P +  E+R+    ++RN +  A   L+   +  +V    GRA  K V  AE++KR
Sbjct:    17 PMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGSGRAAGKAVSCAEIVKR 76

Query:    70 RIAGLHQNTSIGSTDITDMWXXXXXXXXXXXTT--RHVSMITITLSKKDLDTSSTGYQPP 127
             R+ GLHQ T +      D W            T  RHV  + + LS+  LD +  GYQPP
Sbjct:    77 RVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVLLSRDPLDPNECGYQPP 136

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E2R227 LOC486757 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 39/120 (32%), Positives = 57/120 (47%)

Query:    10 PKAEAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKR 69
             P  + P +  E+R+    ++RN +  A   L+   +  +V    GRA  K V  AE++KR
Sbjct:    17 PMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGSGRAAGKAVSCAEIVKR 76

Query:    70 RIAGLHQNTSIGSTDITDMWXXXXXXXXXXXTT--RHVSMITITLSKKDLDTSSTGYQPP 127
             R+ GLHQ T +      D W            T  RHV  + + LS+  LD +  GYQPP
Sbjct:    77 RVPGLHQLTKLHFLQTEDSWVPISPDTGLDPLTVRRHVPAVWVLLSRDPLDPNECGYQPP 136

GO:0003676 "nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	245
pfam01918	67	pfam01918, Alba, Alba	2e-22
PRK04015	91	PRK04015, PRK04015, DNA/RNA-binding protein albA;	3e-11
COG1581	91	COG1581, Ssh10b, Archaeal DNA-binding protein [Tra	1e-09
pfam12328	108	pfam12328, Rpp20, Rpp20 subunit of nuclear RNase M	9e-08
TIGR00285	87	TIGR00285, TIGR00285, DNA-binding protein Alba	2e-06
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	6e-06
PRK12678	672	PRK12678, PRK12678, transcription termination fact	1e-05
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	2e-05
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	5e-05
pfam05918	543	pfam05918, API5, Apoptosis inhibitory protein 5 (A	1e-04
PTZ00034	124	PTZ00034, PTZ00034, 40S ribosomal protein S10; Pro	0.002
PRK04537	572	PRK04537, PRK04537, ATP-dependent RNA helicase Rhl	0.002
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	0.003
PRK12678	672	PRK12678, PRK12678, transcription termination fact	0.003
PRK10590	456	PRK10590, PRK10590, ATP-dependent RNA helicase Rhl	0.003

>gnl|CDD|216785 pfam01918, Alba, Alba

 Score = 86.5 bits (215), Expect = 2e-22
 Identities = 30/66 (45%), Positives = 45/66 (68%), Gaps = 1/66 (1%)

Query: 19 NEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRI-AGLHQN 77
          N I ++++  + NY+  A  LL+  G++E+VLK +GRAI+K V +AE++KRR   GLHQ 
Sbjct: 1  NVIYVSSKSPIMNYVKRALKLLENGGADEVVLKGLGRAISKAVSVAEILKRRFLKGLHQV 60

Query: 78 TSIGST 83
            I ST
Sbjct: 61 NVITST 66

Alba is a novel chromosomal protein that coats archaeal DNA without compacting it. Length = 67

>gnl|CDD|235199 PRK04015, PRK04015, DNA/RNA-binding protein albA; Provisional

 Score = 58.1 bits (141), Expect = 3e-11
 Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 14/103 (13%)

Query: 15  PINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRR-IAG 73
              EN + +  +  M NY+    T   + G+ E+V+KA GRAI+K V +AE+++ R +  
Sbjct: 1   MAEENVVLVGKKPVM-NYVLAVLTQFNQ-GAKEVVIKARGRAISKAVDVAEIVRNRFLPD 58

Query: 74  LH-QNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKK 115
           +  +   IG+ ++T      E+G        +VS I I L KK
Sbjct: 59  VEIKEIKIGTEEVTS-----EDG-----RESNVSTIEIVLEKK 91

Length = 91

>gnl|CDD|224497 COG1581, Ssh10b, Archaeal DNA-binding protein [Transcription]

 Score = 53.9 bits (130), Expect = 1e-09
 Identities = 34/100 (34%), Positives = 57/100 (57%), Gaps = 14/100 (14%)

Query: 18  ENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRR-IAGLH- 75
           EN + +  +  M NY+    T   E G++E+++KA GRAI+K V +AE+++ R I  +  
Sbjct: 4   ENVVLVGKKPVM-NYVLAVLTQFNE-GADEVIIKARGRAISKAVDVAEIVRNRFIPDVQI 61

Query: 76  QNTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKK 115
           ++  IG+ ++       E+G      TR+VS I I L+KK
Sbjct: 62  KDIKIGTEEL-----EGEDG-----RTRNVSTIEIVLAKK 91

Length = 91

>gnl|CDD|221532 pfam12328, Rpp20, Rpp20 subunit of nuclear RNase MRP and P

 Score = 48.8 bits (117), Expect = 9e-08
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 41  QEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITD---MWEPLEEGLL 97
           +     E+V+K MG+AI K + +A   +R       +   G+ ++ D     E  ++   
Sbjct: 36  EGLKLEEVVVKGMGKAIEKALSLALHFQRE-KNYKVDVRTGTVEVVDEIVEDEDDDDDEE 94

Query: 98  PLETTRHVSMITI 110
           P    R VS + +
Sbjct: 95  PETRKRTVSAVEV 107

The nuclear RNase P of Saccharomyces cerevisiae is made up of at least nine protein subunits; Pop1, Pop3, Pop4, Pop5, Pop6, Pop7, Pop8, Rpr2 and Rpp1. Many of these subunits seem to be present also in the RNase MRP, with the exception of Rpr2 (Rpp21) which is unique to RNase P. Human nuclear RNase P and MRP appear to contain at least 10 protein subunits, Rpp14, Rpp20, Rpp21, Rpp25, Rpp29, Rpp30, Rpp38, Rpp40, hPop1 and hPop5, although there is recent evidence that not all of these subunits are shared between P and MRP. Archaeal RNase P has at least four protein subunits homologous to eukaryotic RNase P/MRP proteins. In the yeast RNase P, Pop6 and Pop7 (the Rpp20 homologue) interact with each other and they are both interaction partners of Pop4; in the human MRP Rpp25 and Rpp20 interact with each other and Rpp25 binds to Rpp29 (Pop4). Length = 108

>gnl|CDD|129386 TIGR00285, TIGR00285, DNA-binding protein Alba

 Score = 44.4 bits (105), Expect = 2e-06
 Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 10/97 (10%)

Query: 18  ENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQN 77
           EN + I  +  M NY+    T L   G++E+++KA GRAI++ V +AE+++ R       
Sbjct: 1   ENVVYIGNKPVM-NYVLAVLTQLNS-GADEVIIKARGRAISRAVDVAEIVRNRF------ 52

Query: 78  TSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSK 114
             I    I  +    EE         +VS I I L+K
Sbjct: 53  --IPDIKIKKIKIGTEEIKSEQGREVNVSTIEIVLAK 87

Alba has been shown to bind DNA and affect DNA supercoiling in a temperature dependent manner. It is regulated by acetylation (alba = acetylation lowers binding affinity) by the Sir2 protein. Alba is proposed to play a role in establishment or maintenace of chromatin architecture and thereby in transcription repression. This protein appears so far only in the Archaea, but may be universal there. There is a single member in three of the first four completed archaeal genomes, and a second copy in A. fulgidus. In Sulfolobus shibatae there is a tandem second copy that is poorly conserved and scores below the trusted cutoff; all other members of the family are conserved at greater than 50 % pairwise identity [DNA metabolism, Chromosome-associated proteins]. Length = 87

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 45.9 bits (109), Expect = 6e-06
 Identities = 27/57 (47%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 148 RGRGRGRGGRGRGRGRGGDYNVDGWDGGRGFGGRGRGRGRGRSFRGRGWGYGSQSGG 204
            G G GRGG   G G GG     G  G  G  G GRGRGRG    GRG G G   G 
Sbjct: 4   GGFGGGRGGGRGGGGGGGR----GGGGRGGGRGGGRGRGRGGGGGGRGGGGGGGPGK 56

Length = 293

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 29/99 (29%), Positives = 34/99 (34%), Gaps = 1/99 (1%)

Query: 140 EDEGEGSPRGRGRGRGGRGRGRGRGGDYNVDGWDGGRGFGGRGRGRGRGRSFRGRGWGYG 199
           E E     R   RGR G  R R    +      + GR  GG  RGR R R  R    G  
Sbjct: 184 EAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRD-RRDARGDD 242

Query: 200 SQSGGYYDYGELEAPPVGRGRGRGRARGRGRGRNPRSGG 238
           ++       G+      GR   R R R R   R    G 
Sbjct: 243 NREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDGGN 281

Length = 672

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 28/55 (50%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 150 RGRGRGGRGRGRGRGGDYNVDGWDGGRGFGGRGRGRGRGRSFRGRGWGYGSQSGG 204
              G  G GRG GRGG        GGRG GGRG GRGRGR   G G G G   G 
Sbjct: 1   GMGGGFGGGRGGGRGGGGGGGRGGGGRG-GGRGGGRGRGRGGGGGGRGGGGGGGP 54

Length = 293

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 43.2 bits (102), Expect = 5e-05
 Identities = 24/51 (47%), Positives = 24/51 (47%), Gaps = 7/51 (13%)

Query: 143 GEGSPRGRGRGRGGRGRGRGRGGDYNVDGWDGGRGFGGRGRGRGRGRSFRG 193
           G G   G GRG GGRG GRG G          GRG GG GRG G G     
Sbjct: 13  GRGGGGGGGRGGGGRGGGRGGGR-------GRGRGGGGGGRGGGGGGGPGK 56

Length = 293

>gnl|CDD|218811 pfam05918, API5, Apoptosis inhibitory protein 5 (API5)

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 21/46 (45%), Positives = 22/46 (47%), Gaps = 11/46 (23%)

Query: 143 GEGSPRGRGRGRGGRGRGRGRGGDYNVDGWDGGRGFGGRGRGRGRG 188
           GEG  +      GGRGR RGRG            G GGRGRG  RG
Sbjct: 507 GEGISKVGQSY-GGRGRTRGRGR----------GGGGGRGRGYNRG 541

This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterized by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in human chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors. Length = 543

>gnl|CDD|173331 PTZ00034, PTZ00034, 40S ribosomal protein S10; Provisional

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 17/37 (45%), Positives = 18/37 (48%)

Query: 128 LPADQVKPWNEFEDEGEGSPRGRGRGRGGRGRGRGRG 164
            PA   K    FE + E      GRG  GRGRG GRG
Sbjct: 88  FPATHKKKSVNFERKTEEEGSRGGRGGRGRGRGYGRG 124

Length = 124

>gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional

 Score = 38.8 bits (90), Expect = 0.002
 Identities = 25/89 (28%), Positives = 28/89 (31%), Gaps = 3/89 (3%)

Query: 148 RGRGRGRGGRGRGRGRGGDYNVDGWDGGRGFGGRGRGRGRGRSFRGRGWGYGSQSGGYYD 207
           RG GR   G G   G  G     G   G G  G+ R R + R                  
Sbjct: 432 RGGGRSGPGGGSRSGSVGG---GGRRDGAGADGKPRPRRKPRVEGEADAAAAGAETPVVA 488

Query: 208 YGELEAPPVGRGRGRGRARGRGRGRNPRS 236
               +AP V    G    R R R RN R 
Sbjct: 489 AAAAQAPGVVAADGERAPRKRRRRRNGRP 517

Length = 572

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 32/96 (33%), Positives = 34/96 (35%), Gaps = 38/96 (39%)

Query: 148 RGRGRGRGGRGRGRGRGGDYNVDGWDGGRGFGGRGRGRGRGRSFRGRGWGYGSQSGGYYD 207
              G   GGRG GRG GG        GGRG GGRG GRG GR                  
Sbjct: 1   GMGGGFGGGRGGGRGGGGG-------GGRGGGGRGGGRGGGR------------------ 35

Query: 208 YGELEAPPVGRGRGRGRARGRGRGRNPRSGGPFQAV 243
                        GRGR  G G       GGP + +
Sbjct: 36  -------------GRGRGGGGGGRGGGGGGGPGKVI 58

Length = 293

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 38.3 bits (90), Expect = 0.003
 Identities = 21/58 (36%), Positives = 24/58 (41%)

Query: 137 NEFEDEGEGSPRGRGRGRGGRGRGRGRGGDYNVDGWDGGRGFGGRGRGRGRGRSFRGR 194
            +  +E      G  RGR  R   R   GD N +      G  G GRG  RGR FR R
Sbjct: 212 GDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDR 269

Length = 672

>gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 19/65 (29%), Positives = 26/65 (40%)

Query: 174 GGRGFGGRGRGRGRGRSFRGRGWGYGSQSGGYYDYGELEAPPVGRGRGRGRARGRGRGRN 233
             RG GGRG+G GRG+       G G          E  +  +G  +  G  + R R R 
Sbjct: 392 QQRGGGGRGQGGGRGQQQGQPRRGEGGAKSASAKPAEKPSRRLGDAKPAGEQQRRRRPRK 451

Query: 234 PRSGG 238
           P +  
Sbjct: 452 PAAAQ 456

Length = 456

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	245
KOG2567	179	consensus Uncharacterized conserved protein [Funct	100.0
PRK04015	91	DNA/RNA-binding protein albA; Provisional	99.84
TIGR00285	87	DNA-binding protein Alba. This protein appears so	99.81
COG1581	91	Ssh10b Archaeal DNA-binding protein [Transcription	99.79
PF01918	70	Alba: Alba; InterPro: IPR002775 Members of this fa	99.69
PF12328	144	Rpp20: Rpp20 subunit of nuclear RNase MRP and P; P	99.43
KOG0921	1282	consensus Dosage compensation complex, subunit MLE	96.88
KOG3973	465	consensus Uncharacterized conserved glycine-rich p	95.7
PF04232	86	SpoVS: Stage V sporulation protein S (SpoVS); Inte	90.6
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	82.82

>KOG2567 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=3.4e-46  Score=314.34  Aligned_cols=144  Identities=44%  Similarity=0.682  Sum_probs=139.4

Q ss_pred             CCCceeccCCCCCCCCCCCeEEEcCCcchHHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHhCCceeeeEE
Q 025950            1 MDRYQRVEKPKAEAPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSI   80 (245)
Q Consensus         1 Md~Y~rV~kp~~~~p~~~NeIrVt~k~~i~~yV~~A~~lL~~~g~~eVvIka~G~AIsKAV~vAEILKrri~GLhQ~t~I   80 (245)
                      ||.|++|.||.+++|++.|+|||+.+++++|||.||+.+|+++.++.|||+|||+||+|+|+||||||+|+++|||+|.|
T Consensus         1 ~~~e~~~~kP~~d~pp~a~emrV~~g~kirN~i~~A~~~L~~~~~r~VVfsg~Grai~KTVscaEilKrRipgLhQ~t~l   80 (179)
T KOG2567|consen    1 MSVEQPASKPFPDLPPDANEMRVKSGSKIRNLIEFATELLQKGSHRCVVFSGSGRAIVKTVSCAEILKRRIPGLHQVTRL   80 (179)
T ss_pred             CccccccCCCcccCCCCcceEEEccCchHHHHHHHHHHHhhCCCeeEEEEecCCcceeeeeeHHHHHhhhCcchhhhcee
Confidence            89999999999999999999999999999999999999999989999999999999999999999999999999999999


Q ss_pred             EEEEecccccccccCCCcceeeeeeeeEEEEEecCCCCCCCCCCCCCCCcCCCCCCCccccCCC
Q 025950           81 GSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKDLDTSSTGYQPPLPADQVKPWNEFEDEGE  144 (245)
Q Consensus        81 ~sv~i~d~~ePleEGl~~~~~~R~Vs~I~ItLsk~~lD~~~pGYQ~Pl~~~~vk~~~~~~~~~~  144 (245)
                      .+++|+|.|+|++|||++++++||||+|+|+||+++||++++|||+|.|..+.+.+...+|+..
T Consensus        81 ~~~sv~d~W~p~~eGl~pl~vtRhVp~l~IlLS~deL~~~~~GyQ~P~~~p~p~~~~~~p~~~~  144 (179)
T KOG2567|consen   81 RYTSVEDVWEPTEEGLEPLEVTRHVPMLHILLSLDELDPTSPGYQPPNPQPHPRSQPRHPYSPR  144 (179)
T ss_pred             eeeehhhcccccccCccceEEeeccceEEEEEecccCCCCCCCccCCCCCCCCCCcccCCcccc
Confidence            9999999999999999999999999999999999999999999999999888888777777653

>PRK04015 DNA/RNA-binding protein albA; Provisional

Probab=99.84  E-value=1.5e-20  Score=146.12  Aligned_cols=90  Identities=33%  Similarity=0.450  Sum_probs=72.8

Q ss_pred             CCCCeEEEcCCcchHHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHhCCceeeeEEEEEEecccccccccC
Q 025950           16 INENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEG   95 (245)
Q Consensus        16 ~~~NeIrVt~k~~i~~yV~~A~~lL~~~g~~eVvIka~G~AIsKAV~vAEILKrri~GLhQ~t~I~sv~i~d~~ePleEG   95 (245)
                      ..+|+|+|++|+ +.+||.+++.+|++ +.++|+|||+|+||+|||+||||||+||...++   +..+++.++-...++|
T Consensus         2 ~~en~i~Ig~kp-vmnYV~~~~~~l~~-g~~eV~iKa~G~aIskAV~vaEilk~r~~~~v~---v~~I~i~se~i~~~~g   76 (91)
T PRK04015          2 AEENVVLVGKKP-VMNYVLAVLTQFNQ-GAKEVVIKARGRAISKAVDVAEIVRNRFLPDVE---IKEIKIGTEEVTSEDG   76 (91)
T ss_pred             CCCCEEEEcCCc-HHHHHHHHHHHHhC-CCCeEEEEEeccccchhhhHHHHHHHhccCCeE---EEEEEeccEEeecCCC
Confidence            357999999985 55999999999994 899999999999999999999999999865554   4444444433333455


Q ss_pred             CCcceeeeeeeeEEEEEecC
Q 025950           96 LLPLETTRHVSMITITLSKK  115 (245)
Q Consensus        96 l~~~~~~R~Vs~I~ItLsk~  115 (245)
                           .+++||+|+|+|+++
T Consensus        77 -----~~~~VS~IEI~l~k~   91 (91)
T PRK04015         77 -----RESNVSTIEIVLEKK   91 (91)
T ss_pred             -----cEEEEEEEEEEEecC
Confidence                 679999999999874

>TIGR00285 DNA-binding protein Alba

Probab=99.81  E-value=2.6e-19  Score=138.03  Aligned_cols=87  Identities=34%  Similarity=0.454  Sum_probs=74.7

Q ss_pred             CCeEEEcCCcchHHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHhCCceeeeEEEEEEecccccccccCCC
Q 025950           18 ENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLL   97 (245)
Q Consensus        18 ~NeIrVt~k~~i~~yV~~A~~lL~~~g~~eVvIka~G~AIsKAV~vAEILKrri~GLhQ~t~I~sv~i~d~~ePleEGl~   97 (245)
                      +|.|+|++|+-| +||..++.+|++ +.++|+|||+|+||+|||+|||+||+||...+   ++..+++.++-.+.++|  
T Consensus         1 e~~i~vG~KPvm-nYVlavlt~fn~-g~~eV~iKarG~aIskAVdvaeiik~r~~~~v---~v~~I~i~te~~~~~~G--   73 (87)
T TIGR00285         1 ENVVYIGNKPVM-NYVLAVLTQLNS-GADEVIIKARGRAISRAVDVAEIVRNRFIPDI---KIKKIKIGTEEIKSEQG--   73 (87)
T ss_pred             CCEEEEcCCcHH-HHHHHHHHHHhC-CCCeEEEEEecchhhhHHHHHHHHHHhccCCc---eEEEEEeccEEeecCCC--
Confidence            589999999666 999999999986 89999999999999999999999999986554   56666666665566677  


Q ss_pred             cceeeeeeeeEEEEEec
Q 025950           98 PLETTRHVSMITITLSK  114 (245)
Q Consensus        98 ~~~~~R~Vs~I~ItLsk  114 (245)
                         .+++||+|+|+|++
T Consensus        74 ---~~~~VStIEI~l~~   87 (87)
T TIGR00285        74 ---REVNVSTIEIVLAK   87 (87)
T ss_pred             ---ceeeEEEEEEEEeC
Confidence               67899999999975

This protein appears so far only in the Archaea, but may be universal there. There is a single member in three of the first four completed archaeal genomes, and a second copy in A. fulgidus. In Sulfolobus shibatae there is a tandem second copy that is poorly conserved and scores below the trusted cutoff; all other members of the family are conserved at greater than 50 % pairwise identity.

>COG1581 Ssh10b Archaeal DNA-binding protein [Transcription]

Probab=99.79  E-value=1.1e-18  Score=134.00  Aligned_cols=89  Identities=37%  Similarity=0.523  Sum_probs=76.4

Q ss_pred             CCCeEEEcCCcchHHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHhCCceeeeEEEEEEecccccccccCC
Q 025950           17 NENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGL   96 (245)
Q Consensus        17 ~~NeIrVt~k~~i~~yV~~A~~lL~~~g~~eVvIka~G~AIsKAV~vAEILKrri~GLhQ~t~I~sv~i~d~~ePleEGl   96 (245)
                      ++|.|+|.+|+-| |||..++.+|++ +.++|+|||.|+||||||++||||++||--   .++|..++|.++-...++| 
T Consensus         3 ~envV~vG~KPvm-NYVlAvlt~fn~-g~~eViiKARGraIskAVDvaeivRnrf~p---~v~ik~Iki~se~~~~~~g-   76 (91)
T COG1581           3 EENVVLVGKKPVM-NYVLAVLTQFNE-GADEVIIKARGRAISKAVDVAEIVRNRFIP---DVQIKDIKIGTEELEGEDG-   76 (91)
T ss_pred             CccEEEEcCcchH-HHHHHHHHHHHc-CCCEEEEEecchhhHhhHhHHHHHHHhcCC---CceEEEEEecceeeecCCC-
Confidence            4699999999666 999999999997 799999999999999999999999999832   3477788887766666666 


Q ss_pred             CcceeeeeeeeEEEEEecC
Q 025950           97 LPLETTRHVSMITITLSKK  115 (245)
Q Consensus        97 ~~~~~~R~Vs~I~ItLsk~  115 (245)
                          .+++||+|+|.|.+.
T Consensus        77 ----r~~~VS~IeI~L~k~   91 (91)
T COG1581          77 ----RTRNVSTIEIVLAKK   91 (91)
T ss_pred             ----ceeeEEEEEEEEecC
Confidence                578999999999863

>PF01918 Alba: Alba; InterPro: IPR002775 Members of this family include the archaeal protein Alba and a number of eukaryotic proteins with no known function

Probab=99.69  E-value=1.6e-16  Score=116.40  Aligned_cols=64  Identities=39%  Similarity=0.654  Sum_probs=57.2

Q ss_pred             CeEEEcCCcchHHHHHHHHHHH---hhcCCCeEEEEEcChhHHHHHHHHHHHHHHhC-CceeeeEEEE
Q 025950           19 NEIRITTQGRMRNYITYATTLL---QEKGSNEIVLKAMGRAINKTVMIAELIKRRIA-GLHQNTSIGS   82 (245)
Q Consensus        19 NeIrVt~k~~i~~yV~~A~~lL---~~~g~~eVvIka~G~AIsKAV~vAEILKrri~-GLhQ~t~I~s   82 (245)
                      |+|+|++++++.+||.+|+++|   ++.+.++|+|+|+|+||+|||+||||||+++. +|||++.+.+
T Consensus         1 n~I~V~~~~~~~~~v~~~~~~L~~~~~~~~~~V~l~g~G~aI~kaI~vaei~K~~~~~~~~qv~~~t~   68 (70)
T PF01918_consen    1 NEIYVSSNSPIKSYVKRALKLLEGRENGKNDEVVLKGRGKAISKAISVAEILKRRFGEGLYQVNKITS   68 (70)
T ss_dssp             SEEEE-STS-HHHHHHHHHHHHT-TTHTTCSEEEEEEECCHHHHHHHHHHHHHHHTSTTTEEEEEEEE
T ss_pred             CEEEECCCCCHHHHHHHHHHHHhhhhcCCCCEEEEEEEcHHHHHHHHHHHHHHHhhcCCCEEEEEEec
Confidence            7999999999999999999999   44479999999999999999999999999995 8999988764

The DNA/RNA-binding protein Alba binds double-stranded DNA tightly but without sequence specificity. It binds rRNA and mRNA in vivo, and may play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes. It is distributed uniformly and abundantly on the chromosome. Alba has been shown to bind DNA and affect DNA supercoiling in a temperature dependent manner []. It is regulated by acetylation (alba = acetylation lowers binding affinity) by the Sir2 protein. Alba is proposed to play a role in establishment or maintenance of chromatin architecture and thereby in transcription repression. For further information see [].; GO: 0003676 nucleic acid binding; PDB: 3TOE_B 3IAB_A 1NFJ_A 1NFH_B 2Q3V_B 1VM0_B 1NH9_A 1Y9X_A 3U6Y_C 2H9U_A ....

>PF12328 Rpp20: Rpp20 subunit of nuclear RNase MRP and P; PDB: 3IAB_B

Probab=99.43  E-value=6.3e-13  Score=111.34  Aligned_cols=93  Identities=25%  Similarity=0.369  Sum_probs=67.1

Q ss_pred             CCeEEEcCCcchHHHHHHHHHHHhhc-------------------C------------CCeEEEEEcChhHHHHHHHHHH
Q 025950           18 ENEIRITTQGRMRNYITYATTLLQEK-------------------G------------SNEIVLKAMGRAINKTVMIAEL   66 (245)
Q Consensus        18 ~NeIrVt~k~~i~~yV~~A~~lL~~~-------------------g------------~~eVvIka~G~AIsKAV~vAEI   66 (245)
                      ++.|+|+++++|-..|..+.+||..-                   .            .++|+|||||+||.|||+||.-
T Consensus         3 ~~~iyVss~TPfmSavKRv~K~L~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~gtGkAIeKal~la~~   82 (144)
T PF12328_consen    3 PKVIYVSSKTPFMSAVKRVRKLLDKAEKRATSSVNLAKKKKSQKKKIAQLAEGSEALKSEEVTVKGTGKAIEKALSLALW   82 (144)
T ss_dssp             TTEEE--SS--HHHHHHHHHHHHHHHHHH----------------T-------------SEEEEEEEGGGHHHHHHHHHH
T ss_pred             CcEEEEecCCchHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccCccEEEEEeccHHHHHHHHHHHH
Confidence            58999999999999999999999631                   1            2799999999999999999999


Q ss_pred             HHHHhCCceeeeEEEEEEecccccccc------------------cCCCcceeeeeeeeEEEE
Q 025950           67 IKRRIAGLHQNTSIGSTDITDMWEPLE------------------EGLLPLETTRHVSMITIT  111 (245)
Q Consensus        67 LKrri~GLhQ~t~I~sv~i~d~~ePle------------------EGl~~~~~~R~Vs~I~It  111 (245)
                      |++.. ++--.+.++||.+.|++++.+                  +..++..++|+||+|+|.
T Consensus        83 Fq~~~-~~~V~V~TgTV~vvDdi~~~e~~~~~~~~~~~~~~~~~~~~~~~esR~R~vS~VEv~  144 (144)
T PF12328_consen   83 FQRKK-GYKVEVRTGTVEVVDDIVEDEDEDEDEEESEEREDDDDDEDEEPESRTRWVSMVEVA  144 (144)
T ss_dssp             HHHTT----EEEEEEEEEEEEE-----------------------------EEEEEEEEEEEE
T ss_pred             HhhcC-CeEEEEEeceEEEEEEEeeccccccccccccccccCccccccCccceEEeeEEEEEC
Confidence            98875 677779999999999998763                  456778999999999984

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]

Probab=96.88  E-value=0.0049  Score=64.94  Aligned_cols=9  Identities=56%  Similarity=1.003  Sum_probs=3.5

Q ss_pred             CCCCCCCCC
Q 025950          218 RGRGRGRAR  226 (245)
Q Consensus       218 rgrgr~rg~  226 (245)
                      |++||+++.
T Consensus      1258 rgggrgagg 1266 (1282)
T KOG0921|consen 1258 RGGGRGAGG 1266 (1282)
T ss_pred             CCCCCCCCC
Confidence            333333333

>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]

Probab=95.70  E-value=0.096  Score=50.30  Aligned_cols=14  Identities=21%  Similarity=0.010  Sum_probs=7.9

Q ss_pred             eeeeeeeEEEEEec
Q 025950          101 TTRHVSMITITLSK  114 (245)
Q Consensus       101 ~~R~Vs~I~ItLsk  114 (245)
                      .++..|+|+=.+--
T Consensus       287 Re~Taski~k~~ig  300 (465)
T KOG3973|consen  287 RERTASKIHKLSIG  300 (465)
T ss_pred             hhhhhhhhcccccc
Confidence            34566677655543

>PF04232 SpoVS: Stage V sporulation protein S (SpoVS); InterPro: IPR007347 In Bacillus subtilis this protein interferes with sporulation at an early stage and this inhibitory effect is overcome by SpoIIB and SpoVG

Probab=90.60  E-value=4.3  Score=31.61  Aligned_cols=66  Identities=18%  Similarity=0.314  Sum_probs=40.9

Q ss_pred             CeEEEcCCcchHHHHHHHHHHHhhcCCCeEEEEEcC-hhHHHHHHHHHHHHHHhC--C--ceeeeEEEEEEec
Q 025950           19 NEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMG-RAINKTVMIAELIKRRIA--G--LHQNTSIGSTDIT   86 (245)
Q Consensus        19 NeIrVt~k~~i~~yV~~A~~lL~~~g~~eVvIka~G-~AIsKAV~vAEILKrri~--G--LhQ~t~I~sv~i~   86 (245)
                      +.++|+++++....-......|.+  ...|.|.|+| .|++.||.-.-|-+.-+.  |  |+..-.+..+++.
T Consensus         2 e~LKVSs~S~p~~vAgAIa~~lre--~~~v~lqaiGa~AvnqAvKAIAiAR~~l~~~g~dl~~~P~F~~v~i~   72 (86)
T PF04232_consen    2 EVLKVSSKSNPNAVAGAIAGVLRE--GGKVELQAIGAGAVNQAVKAIAIARGYLAPDGIDLVCVPAFIDVEID   72 (86)
T ss_dssp             -EEEE-TT--HHHHHHHHHHHHHH--TSEEEEEE-SHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEEET
T ss_pred             ceEEEcCCCCHHHHHHHHHHHHhc--CCcEEEEEECHHHHHHHHHHHHHHHHhhhhhCceEEEEeeEEEEeeC
Confidence            468999998886665555556765  3599999999 788888887766665542  3  4444444444443

SpoVS seems to play a positive role in allowing progression beyond stage V of sporulation. Null mutations in the spoVS gene block sporulation at stage V, impairing the development of heat resistance and coat assembly [].; PDB: 2EH1_B 2EK0_B.

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=82.82  E-value=0.39  Score=48.61  Aligned_cols=19  Identities=21%  Similarity=0.190  Sum_probs=7.6

Q ss_pred             HHHHHHHHHHHHhCCceee
Q 025950           59 KTVMIAELIKRRIAGLHQN   77 (245)
Q Consensus        59 KAV~vAEILKrri~GLhQ~   77 (245)
                      .|+.+++=|-.-+..||-.
T Consensus       429 ~aLkt~~NI~~lik~L~~~  447 (556)
T PF05918_consen  429 TALKTTNNILALIKDLFHN  447 (556)
T ss_dssp             HHHHHHHHHHHHHCC----
T ss_pred             HHHHHHhhHHHHHHHHhhC
Confidence            4554444444555555433

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	245
2h9u_A	102	Crystal Structure Of The Archaea Specific Dna Bindi		1e-05

>pdb|2H9U|A Chain A, Crystal Structure Of The Archaea Specific Dna Binding Protein Length = 102

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 20  EIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTS 79
           E+RI  +  M NY+    T L E+G+N++V+KA GR IN+ V   E++++R A   +N  
Sbjct: 8   EVRIGRKPVM-NYVLAILTTLMEQGTNQVVVKARGRNINRAVDAVEIVRKRFA---KNIE 63
Query: 80  IGSTDITDMWXXXXXXXXXXXTTRHVSMITITLSK 114
           I    I D              TR VS I I L K
Sbjct: 64  IKDIKI-DSQEIEVQTPEGQTRTRRVSSIEICLEK 97

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	245
2h9u_A	102	DNA/RNA-binding protein ALBA 2; archaea, DNA bindi	99.93
1nfj_A	89	ALBA, conserved hypothetical protein AF1956; SIR2,	99.92
2bky_A	97	DNA/RNA-binding protein ALBA 1; archaeal DNA bindi	99.92
1nh9_A	87	MJA10B, DNA-binding protein ALBA; 2.00A {Methanoca	99.92
3toe_A	91	MTH10B, DNA/RNA-binding protein ALBA; SAC10B famil	99.88
2bky_X	89	DNA/RNA-binding protein ALBA 2; archaeal DNA bindi	99.86
1vm0_A	130	Unknown protein; structural genomics, protein stru	99.77
3iab_B	140	Ribonucleases P/MRP protein subunit POP7; RNAse P,	99.74
3iab_A	158	Ribonucleases P/MRP protein subunit POP6; RNAse P,	98.16
1b34_A	119	Protein (small nuclear ribonucleoprotein SM D1); s	93.6
2ek0_A	90	Stage V sporulation protein S (spovs) related Pro;	85.74

>2h9u_A DNA/RNA-binding protein ALBA 2; archaea, DNA binding protein, structural G NPPSFA, national project on protein structural and function analyses; 2.00A {Aeropyrum pernix} PDB: 3u6y_A*

Probab=99.93  E-value=4.5e-26  Score=179.41  Aligned_cols=92  Identities=35%  Similarity=0.518  Sum_probs=84.5

Q ss_pred             CCeEEEcCCcchHHHHHHHH-HHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHh-CCce-eeeEEEEEEeccccccccc
Q 025950           18 ENEIRITTQGRMRNYITYAT-TLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRI-AGLH-QNTSIGSTDITDMWEPLEE   94 (245)
Q Consensus        18 ~NeIrVt~k~~i~~yV~~A~-~lL~~~g~~eVvIka~G~AIsKAV~vAEILKrri-~GLh-Q~t~I~sv~i~d~~ePleE   94 (245)
                      +|+|+|++|+. ++||.+|+ .||++ ++++|+|||+|+||+|||+||||||+|| ++|| |.++|+|+++.|+|+   +
T Consensus         6 ~n~I~V~~k~~-~nyV~~a~~~ll~~-g~~eV~ikA~G~AIskAV~vaEilk~r~~~gl~~q~i~i~s~~i~d~~e---~   80 (102)
T 2h9u_A            6 APEVRIGRKPV-MNYVLAILTTLMEQ-GTNQVVVKARGRNINRAVDAVEIVRKRFAKNIEIKDIKIDSQEIEVQTP---E   80 (102)
T ss_dssp             CCEEECCSSCH-HHHHHHHHHHHTST-TCCEEEEEEETTHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEEEEECT---T
T ss_pred             CCEEEEcCCCH-HHHHHHHHHHHHhC-CCCEEEEEEechhhhHHHHHHHHHHHhccCCceEEEEEEeeEEEecccc---C
Confidence            59999999988 59999999 99994 8999999999999999999999999999 8999 999999999999854   5


Q ss_pred             CCCcceeeeeeeeEEEEEecCCC
Q 025950           95 GLLPLETTRHVSMITITLSKKDL  117 (245)
Q Consensus        95 Gl~~~~~~R~Vs~I~ItLsk~~l  117 (245)
                      |+   ..+|+||+|+|+|+++|.
T Consensus        81 g~---~~~r~vS~IeI~Lsk~~~  100 (102)
T 2h9u_A           81 GQ---TRTRRVSSIEICLEKAGE  100 (102)
T ss_dssp             SC---EEEEEEEEEEEEEEECSS
T ss_pred             Cc---cceeEeeeEEEEEEccCC
Confidence            63   379999999999999875

>1nfj_A ALBA, conserved hypothetical protein AF1956; SIR2, HDAC, gene regulation, transcription; 2.00A {Archaeoglobus fulgidus} SCOP: d.68.6.1 PDB: 1nfh_A 2z7c_A*

Probab=99.92  E-value=3.4e-25  Score=170.43  Aligned_cols=86  Identities=34%  Similarity=0.601  Sum_probs=78.5

Q ss_pred             CCCeEEEcCCcchHHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHh-CCce-eeeEEEEEEeccccccccc
Q 025950           17 NENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRI-AGLH-QNTSIGSTDITDMWEPLEE   94 (245)
Q Consensus        17 ~~NeIrVt~k~~i~~yV~~A~~lL~~~g~~eVvIka~G~AIsKAV~vAEILKrri-~GLh-Q~t~I~sv~i~d~~ePleE   94 (245)
                      .+|+|+|++|+ +.+||.+|+.||++ ++++|+|||+|+||+|||+||||||+|+ ++|| |.++|+|+++.|     +|
T Consensus         2 ~~n~I~V~~k~-v~~yV~~~~~~l~~-g~~eV~ika~G~AIskAV~vaeilk~r~~~gl~i~~i~i~s~~i~~-----e~   74 (89)
T 1nfj_A            2 AEHVVYVGNKP-VMNYVLATLTQLNE-GADEVVIKARGRAISRAVDVAEIVRNRFMPGVKVKEIKIDTEELES-----EQ   74 (89)
T ss_dssp             -CEEEECCSSC-HHHHHHHHHHHHHT-TCSEEEEEEETTHHHHHHHHHHHHHHHTCTTCEEEEEEEEEEECCC-----BT
T ss_pred             CCCEEEEcCCC-HHHHHHHHHHHHhC-CCCEEEEEEecHHHHHHHHHHHHHHHhccCCcEEEEEEEeEEEEEc-----CC
Confidence            57999999998 77999999999995 8999999999999999999999999999 8899 999999988865     35


Q ss_pred             CCCcceeeeeeeeEEEEEec
Q 025950           95 GLLPLETTRHVSMITITLSK  114 (245)
Q Consensus        95 Gl~~~~~~R~Vs~I~ItLsk  114 (245)
                      |     .+|+||+|+|+|++
T Consensus        75 g-----~~r~vs~IeI~L~k   89 (89)
T 1nfj_A           75 G-----RRSNVSTIEIVLAK   89 (89)
T ss_dssp             T-----BCCEEEEEEEEEEC
T ss_pred             C-----cEEEeeEEEEEEEC
Confidence            5     78999999999986

>2bky_A DNA/RNA-binding protein ALBA 1; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 1h0x_A* 1h0y_A* 1y9x_A

Probab=99.92  E-value=5.6e-25  Score=171.75  Aligned_cols=89  Identities=37%  Similarity=0.552  Sum_probs=79.6

Q ss_pred             CCCCCeEEEcCCcchHHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHhCC--c-eeeeEEEEEEecccccc
Q 025950           15 PINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAG--L-HQNTSIGSTDITDMWEP   91 (245)
Q Consensus        15 p~~~NeIrVt~k~~i~~yV~~A~~lL~~~g~~eVvIka~G~AIsKAV~vAEILKrri~G--L-hQ~t~I~sv~i~d~~eP   91 (245)
                      +.++|+|+|++|+ +.+||.+|+.||++ ++++|+|||+|+||+|||+||||||+||.+  | ||.++|+|+++.|+   
T Consensus         6 ~~~~n~I~V~~k~-v~~YV~~a~~ll~~-g~~eV~ikA~G~AIskAV~vaeilk~r~~~~~l~~~~i~i~s~~i~~e---   80 (97)
T 2bky_A            6 PTPSNVVLIGKKP-VMNYVLAALTLLNQ-GVSEIVIKARGRAISKAVDTVEIVRNRFLPDKIEIKEIRVGSQVVTSQ---   80 (97)
T ss_dssp             ---CCEEECCSSC-HHHHHHHHHHHHHT-TCCEEEEEEETTHHHHHHHHHHHHHHHTSTTTEEEEEEEEEEEEEEET---
T ss_pred             CCCCCEEEEcCcC-HHHHHHHHHHHHhC-CCCEEEEEEechHHHHHHHHHHHHHHhccCCceEEEEEEeeeEEEecC---
Confidence            5578999999998 88999999999995 899999999999999999999999999955  8 89999999999873   


Q ss_pred             cccCCCcceeeeeeeeEEEEEecC
Q 025950           92 LEEGLLPLETTRHVSMITITLSKK  115 (245)
Q Consensus        92 leEGl~~~~~~R~Vs~I~ItLsk~  115 (245)
                        ||     .+|+||+|+|+|+++
T Consensus        81 --~G-----~~r~vS~IeI~L~k~   97 (97)
T 2bky_A           81 --DG-----RQSRVSTIEIAIRKK   97 (97)
T ss_dssp             --TS-----CEEEEEEEEEEEEEC
T ss_pred             --CC-----cEEEeeEEEEEEEcC
Confidence              55     789999999999974

>1nh9_A MJA10B, DNA-binding protein ALBA; 2.00A {Methanocaldococcus jannaschii} SCOP: d.68.6.1

Probab=99.92  E-value=6.9e-25  Score=168.09  Aligned_cols=84  Identities=33%  Similarity=0.567  Sum_probs=73.5

Q ss_pred             CCeEEEcCCcchHHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHh-CCce-eeeEEEEEEecccccccccC
Q 025950           18 ENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRI-AGLH-QNTSIGSTDITDMWEPLEEG   95 (245)
Q Consensus        18 ~NeIrVt~k~~i~~yV~~A~~lL~~~g~~eVvIka~G~AIsKAV~vAEILKrri-~GLh-Q~t~I~sv~i~d~~ePleEG   95 (245)
                      +|+|+|++| ++.+||.+|+.||++ + ++|+|||+|+||+|||+||||||+|+ ++|| |.++|+|.++.|+     ||
T Consensus         2 ~n~I~V~~k-~v~~YV~~~~~~l~~-g-~eV~ikA~G~AIskAV~vaeilk~r~~~~l~v~~i~i~s~~i~~e-----~g   73 (87)
T 1nh9_A            2 DNVVLIGKK-PVMNYVVAVLTQLTS-N-DEVIIKARGKAINKAVDVAEMIRNRFIKDIKIKKIEIGTDKVKNP-----DG   73 (87)
T ss_dssp             CSEEEECSS-CHHHHHHHHHHHHHH-C-SEEEEEEEGGGHHHHHHHHHHHHHHTCTTCEEEEEEEEEEC-----------
T ss_pred             CCEEEEeCc-chHHHHHHHHHHhcC-C-CEEEEEEechHHHHHHHHHHHHHHhccCCeEEEEEEEeEEEEEcC-----CC
Confidence            699999999 999999999999996 6 99999999999999999999999999 7799 9999999998873     45


Q ss_pred             CCcceeeeeeeeEEEEEec
Q 025950           96 LLPLETTRHVSMITITLSK  114 (245)
Q Consensus        96 l~~~~~~R~Vs~I~ItLsk  114 (245)
                           .+|+||+|+|+|++
T Consensus        74 -----~~r~vS~IeI~L~k   87 (87)
T 1nh9_A           74 -----REVNVSTIEIVLAK   87 (87)
T ss_dssp             ------CCCEEEEEEEEEC
T ss_pred             -----cEEEeeEEEEEEEC
Confidence                 68999999999986

>3toe_A MTH10B, DNA/RNA-binding protein ALBA; SAC10B family, alpha/beta mixed, homodimer, unknown function; 2.20A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=99.88  E-value=1.7e-22  Score=155.98  Aligned_cols=89  Identities=34%  Similarity=0.461  Sum_probs=79.7

Q ss_pred             CCCeEEEcCCcchHHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHhCCceeeeEEEEEEecccccccccCC
Q 025950           17 NENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGL   96 (245)
Q Consensus        17 ~~NeIrVt~k~~i~~yV~~A~~lL~~~g~~eVvIka~G~AIsKAV~vAEILKrri~GLhQ~t~I~sv~i~d~~ePleEGl   96 (245)
                      ++|.|+|.+| ++.+||.+++.||++ ++++|+|||+|+||+|||+||||||+||..   .+++++++|.++|.+.++| 
T Consensus         3 ~~~vv~vg~K-pv~~YV~~~i~~~n~-g~~eV~ikA~G~aIskAVdvaei~k~R~~~---~v~v~~I~I~se~~~~e~G-   76 (91)
T 3toe_A            3 EENVVYIGNK-PVMNYVLAVVTQMNG-GTSEVILKARGIAISRAVDVAEIVRNRFIP---DIQIENIDICTEEIIGNEG-   76 (91)
T ss_dssp             --CCEECCSS-CHHHHHHHHHHHHHT-TCCEEEEEEETTHHHHHHHHHHHHHHHTCT---TCEEEEEEEEEEEEECTTS-
T ss_pred             ccCEEEECCC-cHHHHHHHHHHHHhC-CCCEEEEEEehhHHHHHHHHHHHHHHhccC---CcEEEEEEeeeEEeecCCC-
Confidence            4689999988 566999999999995 899999999999999999999999999853   4689999999999999998 


Q ss_pred             CcceeeeeeeeEEEEEecC
Q 025950           97 LPLETTRHVSMITITLSKK  115 (245)
Q Consensus        97 ~~~~~~R~Vs~I~ItLsk~  115 (245)
                          .+|+||+|+|+|+++
T Consensus        77 ----~~r~VS~IeI~L~k~   91 (91)
T 3toe_A           77 ----TATNVSAIEIQLRKD   91 (91)
T ss_dssp             ----SEEEEEEEEEEEEC-
T ss_pred             ----ceeEeeEEEEEEECC
Confidence                789999999999984

>2bky_X DNA/RNA-binding protein ALBA 2; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 2a2y_A 1udv_A

Probab=99.86  E-value=2e-21  Score=149.58  Aligned_cols=84  Identities=21%  Similarity=0.307  Sum_probs=70.0

Q ss_pred             CCCeEEEcCCcchHHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHhCCceeeeEEEEEEecccccccccCC
Q 025950           17 NENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGL   96 (245)
Q Consensus        17 ~~NeIrVt~k~~i~~yV~~A~~lL~~~g~~eVvIka~G~AIsKAV~vAEILKrri~GLhQ~t~I~sv~i~d~~ePleEGl   96 (245)
                      ++|+|+|+++ ++.|||.+|+.||++ ++++|+|||+|+||+|||+||||||+||.++||+.+   +++.++     +  
T Consensus         5 ~~~iv~vg~k-pv~nYV~~~~~~ln~-g~~eV~ikA~G~aIskAVdvaeilk~R~~~~~~i~~---i~i~se-----~--   72 (89)
T 2bky_X            5 LNEIVVRKTK-NVEDHVLDVIVLFNQ-GIDEVILKGTGREISKAVDVYNSLKDRLGDGVQLVN---VQTGSE-----V--   72 (89)
T ss_dssp             CEEEECCTTS-CHHHHHHHHHHHHHT-TCCEEEEEEETTHHHHHHHHHHHHHHHHGGGEEEEE---EEEEEE-----E--
T ss_pred             CCCEEEECCC-CHHHHHHHHHHHHhC-CCCEEEEEEechHHHHHHHHHHHHHHhccCceEEEE---EEeccc-----c--
Confidence            4577777766 888999999999995 899999999999999999999999999988765544   344322     1  


Q ss_pred             CcceeeeeeeeEEEEEecC
Q 025950           97 LPLETTRHVSMITITLSKK  115 (245)
Q Consensus        97 ~~~~~~R~Vs~I~ItLsk~  115 (245)
                         ..+|+||+|+|+|+++
T Consensus        73 ---~~~r~VS~IeI~L~k~   88 (89)
T 2bky_X           73 ---RDRRRISYILLRLKRV   88 (89)
T ss_dssp             ---ETTEEEEEEEEEEEEC
T ss_pred             ---CcceEeeeEEEEEEec
Confidence               3679999999999974

>1vm0_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2 unknown function, nitrate; 1.80A {Arabidopsis thaliana} SCOP: d.68.6.2 PDB: 2q3v_A

Probab=99.77  E-value=1.4e-18  Score=141.71  Aligned_cols=91  Identities=24%  Similarity=0.348  Sum_probs=72.8

Q ss_pred             CCCCCeEEEcC-CcchHHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHhCCceeeeEEEEEEecccccccc
Q 025950           15 PINENEIRITT-QGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLE   93 (245)
Q Consensus        15 p~~~NeIrVt~-k~~i~~yV~~A~~lL~~~g~~eVvIka~G~AIsKAV~vAEILKrri~GLhQ~t~I~sv~i~d~~ePle   93 (245)
                      +.++|+|+|+. +.++++||.+|+.+|+  ++++|+|||||+||++||+||||||+|+-..++.+.|+++++.++     
T Consensus        17 ~~~~N~I~Vs~~kkP~~nYV~~a~~~l~--g~~eV~LkA~G~AIskAV~VAEiLkrr~l~~ikkI~t~t~~i~~~-----   89 (130)
T 1vm0_A           17 SQKKNRIQVSNTKKPLFFYVNLAKRYMQ--QYNDVELSALGMAIATVVTVTEILKNNGFAVEKKIMTSIVDIKDD-----   89 (130)
T ss_dssp             --CTTEEECCCTTSCHHHHHHHHHHHHH--HHSEEEEEEEGGGHHHHHHHHHHHHHTTSEEEEEEEEEEEEEC-------
T ss_pred             CCCCCEEEEecCCCCceeHHHHHHHHHc--CCCEEEEEechHHHHHHHHHHHHHHhcCcceEEEEEeeeEEeccC-----
Confidence            34689999996 4788899999999998  589999999999999999999999999766667777788887653     


Q ss_pred             cCCCcceeeeeeeeEEEEEecCC
Q 025950           94 EGLLPLETTRHVSMITITLSKKD  116 (245)
Q Consensus        94 EGl~~~~~~R~Vs~I~ItLsk~~  116 (245)
                      ++    ....++|.|+|+|.+.+
T Consensus        90 ~~----~r~v~~skIEI~L~k~~  108 (130)
T 1vm0_A           90 AR----GRPVQKAKIEITLVKSE  108 (130)
T ss_dssp             --------CEEEEEEEEEEEECT
T ss_pred             CC----CcccccceEEEEEEecC
Confidence            11    14456799999999864

>3iab_B Ribonucleases P/MRP protein subunit POP7; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}

Probab=99.74  E-value=2.1e-17  Score=136.10  Aligned_cols=110  Identities=15%  Similarity=0.160  Sum_probs=89.1

Q ss_pred             ceeccCCCCCCCCC----CCeEEEcCCcchHHHHHHHHHHHhhc---CCCeEEEEEcChhHHHHHHHHHHHHHHhCCcee
Q 025950            4 YQRVEKPKAEAPIN----ENEIRITTQGRMRNYITYATTLLQEK---GSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQ   76 (245)
Q Consensus         4 Y~rV~kp~~~~p~~----~NeIrVt~k~~i~~yV~~A~~lL~~~---g~~eVvIka~G~AIsKAV~vAEILKrri~GLhQ   76 (245)
                      .+.+.++.+..|..    +|+|+|+++++|...|..|.+||++-   +.++|+|||||+||.|||+||..|+++. ++.-
T Consensus        12 ~k~irk~P~~k~~s~~~~~~~iYV~skTpf~S~vkRi~KlL~~~~k~~~~eV~v~GmGkAIeKal~lAl~fq~~~-~~~V   90 (140)
T 3iab_B           12 TKRVTKHPSLKTLTHKQIHTTIFVKSTTPYVSALKRINKFLDSVHKQGSSYVAVLGMGKAVEKTLALGCHFQDQK-NKKI   90 (140)
T ss_dssp             --CCEECCCCCCCCHHHHTTEEECCSSCCHHHHHHHHHHHHHHHHHHTCSEEEEEEEGGGHHHHHHHHHHHHHTT-CCCE
T ss_pred             CCccCCCCCCcCccccccCceEEEecCCchHHHHHHHHHHHHHhhcCCCcEEEEEechHHHHHHHHHHHHHhhcC-CEEE
Confidence            45566665566654    89999999999999999999999751   6899999999999999999999999974 6888


Q ss_pred             eeEEEEEEecccccccccC------------CCcceeeeeeeeEEEEEec
Q 025950           77 NTSIGSTDITDMWEPLEEG------------LLPLETTRHVSMITITLSK  114 (245)
Q Consensus        77 ~t~I~sv~i~d~~ePleEG------------l~~~~~~R~Vs~I~ItLsk  114 (245)
                      .+.++||.+.|+++|.++.            .+...++|+||+|||.|+.
T Consensus        91 ~V~T~TV~vvDd~~~~~~~~~~~d~~~~d~d~e~~~rkR~vS~VeirIy~  140 (140)
T 3iab_B           91 EVYTKTIEVLDEVITEGQADIDMESDVEDDDKETQLKKRAVSGVELRIYV  140 (140)
T ss_dssp             EEEEEEEEEEEECC--------------------CEEEEEEEEEEEEEEC
T ss_pred             EEEeceEEEEEeeeecCCcccccccccccccccchheeeeeeeEEEEEeC
Confidence            8999999999999998765            5678999999999999863

>3iab_A Ribonucleases P/MRP protein subunit POP6; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}

Probab=98.16  E-value=2.8e-05  Score=64.93  Aligned_cols=91  Identities=15%  Similarity=0.178  Sum_probs=69.9

Q ss_pred             EEEcCCcchHHHHHHHHHHHhh-----cCCCeEEEEEcChhHHHHHHHHHHHHHHh----CCceeeeEEEEEEecccccc
Q 025950           21 IRITTQGRMRNYITYATTLLQE-----KGSNEIVLKAMGRAINKTVMIAELIKRRI----AGLHQNTSIGSTDITDMWEP   91 (245)
Q Consensus        21 IrVt~k~~i~~yV~~A~~lL~~-----~g~~eVvIka~G~AIsKAV~vAEILKrri----~GLhQ~t~I~sv~i~d~~eP   91 (245)
                      +.|++...|+..|+.-.++|+.     ...+.|.|.+.|..|.|+|++.||+|..+    +.|||++++.+.....+   
T Consensus        47 ~kIsKNDnIK~~V~kL~~~l~~~~~s~~~~~~V~l~syg~hIQKmLSIvEI~Kk~~~~~~~~l~Q~NkL~~f~~v~~---  123 (158)
T 3iab_A           47 HGISKNDNIKKSVNKLDKQINMADRSLGLQQVVCIFSYGPHIQKMLSILEIFKKGYIKNNKKIYQWNKLTSFDIKRE---  123 (158)
T ss_dssp             EECCTTCCHHHHHHHHHHHHTCSCTTTTCEEEEEEEEEGGGHHHHHHHHHHHHHHHHTTTCCCEEEEEEEEEEEC-----
T ss_pred             EEeccCchHHHHHHHHHHHHhhhccccccCceEEEEecChHHHHHHHHHHHHHHHhhcCCccHHHHhhhhhhccCCc---
Confidence            4499999999999999998851     24689999999999999999999999987    24999999998865432   


Q ss_pred             cccCCCcceeeeeeeeEEEEEecCC
Q 025950           92 LEEGLLPLETTRHVSMITITLSKKD  116 (245)
Q Consensus        92 leEGl~~~~~~R~Vs~I~ItLsk~~  116 (245)
                      .-..  -+++.-+||-+-+.+++++
T Consensus       124 grNE--Lle~r~~vPILi~~i~~~~  146 (158)
T 3iab_A          124 GRNE--LQEERLKVPILVTMVSDSE  146 (158)
T ss_dssp             -------CCCCEEEEEEEEEEESSS
T ss_pred             cccH--HHHhhcCCCEEEEEEeccc
Confidence            1111  1455668888888888764

>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A

Probab=93.60  E-value=0.013  Score=46.49  Aligned_cols=8  Identities=13%  Similarity=0.372  Sum_probs=3.8

Q ss_pred             eeeeeEEE
Q 025950          103 RHVSMITI  110 (245)
Q Consensus       103 R~Vs~I~I  110 (245)
                      +++..|.|
T Consensus        53 ~~lg~v~I   60 (119)
T 1b34_A           53 VQLETLSI   60 (119)
T ss_dssp             EEEEEEEE
T ss_pred             eEcceEEE
Confidence            44444444

>2ek0_A Stage V sporulation protein S (spovs) related Pro; structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} PDB: 2eh1_A

Probab=85.74  E-value=9.8  Score=28.82  Aligned_cols=65  Identities=18%  Similarity=0.359  Sum_probs=42.8

Q ss_pred             CeEEEcCCcchHHHHHHHHHHHhhcCCCeEEEEEcC-hhHHHHHHHHHHHHHHhC--C--ceeeeEEEEEEe
Q 025950           19 NEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMG-RAINKTVMIAELIKRRIA--G--LHQNTSIGSTDI   85 (245)
Q Consensus        19 NeIrVt~k~~i~~yV~~A~~lL~~~g~~eVvIka~G-~AIsKAV~vAEILKrri~--G--LhQ~t~I~sv~i   85 (245)
                      +.+.|+++++-...-...-.+|.+  ...|.|.|+| .|++.||.-.-|-+.-+.  |  |..+-.+..+++
T Consensus         2 e~LKVSs~S~P~~VAGAIA~~lRe--~~~veiqAIGa~AvNqAVKAIAIARg~l~~~g~Dl~~~PaF~~v~i   71 (90)
T 2ek0_A            2 ETLRVSSKSRPNSVAGAIAAMLRT--KGEVEVQAIGPQAVNQAVKAIAIARGYIAPDNLDLVVKPAFVKLEL   71 (90)
T ss_dssp             CEEEECTTCCHHHHHHHHHHHHHH--HSEEEEEECSHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEEE
T ss_pred             ceEEEcCCCChHHHHHHHHHHHhc--CCceEEEEECHHHHHHHHHHHHHHHHhhcccCceEEEeeeeEEEee
Confidence            468899998885544444446765  3599999999 789988876665555542  3  433344444444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	245
d2bkya1	89	d.68.6.1 (A:9-97) DNA-binding protein AlbA {Archae	5e-34
d1nfja_	87	d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon A	4e-32
d1nh9a_	87	d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon M	1e-29
d1vm0a_	99	d.68.6.2 (A:) Hypothetical protein At2g34160 {Thal	3e-26
d2bkyx1	86	d.68.6.1 (X:4-89) DNA-binding protein AlbA {Archae	4e-25

>d2bkya1 d.68.6.1 (A:9-97) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]} Length = 89

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]

 Score =  115 bits (290), Expect = 5e-34
 Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 9/97 (9%)

Query: 19  NEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNT 78
           N + I  +  M NY+  A TLL + G +EIV+KA GRAI+K V   E+++ R   L    
Sbjct: 2   NVVLIGKKPVM-NYVLAALTLLNQ-GVSEIVIKARGRAISKAVDTVEIVRNRF--LPDKI 57

Query: 79  SIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKK 115
            I    +       ++G         VS I I + KK
Sbjct: 58  EIKEIRVGSQVVTSQDG-----RQSRVSTIEIAIRKK 89

>d1nfja_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 87

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score =  110 bits (278), Expect = 4e-32
 Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 10/97 (10%)

Query: 18  ENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQN 77
           E+ + +  +  M NY+    T L E G++E+V+KA GRAI++ V +AE+++ R       
Sbjct: 1   EHVVYVGNKPVM-NYVLATLTQLNE-GADEVVIKARGRAISRAVDVAEIVRNR---FMPG 55

Query: 78  TSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSK 114
             +    I       E+G        +VS I I L+K
Sbjct: 56  VKVKEIKIDTEELESEQG-----RRSNVSTIEIVLAK 87

>d1nh9a_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 87

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  104 bits (261), Expect = 1e-29
 Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 11/97 (11%)

Query: 18  ENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQN 77
           +N + I  +  M NY+    T L     +E+++KA G+AINK V +AE+I+ R     ++
Sbjct: 2   DNVVLIGKKPVM-NYVVAVLTQLTSN--DEVIIKARGKAINKAVDVAEMIRNR---FIKD 55

Query: 78  TSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSK 114
             I   +I        +G        +VS I I L+K
Sbjct: 56  IKIKKIEIGTDKVKNPDG-----REVNVSTIEIVLAK 87

>d1vm0a_ d.68.6.2 (A:) Hypothetical protein At2g34160 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 99

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: Hypothetical protein At2g34160
domain: Hypothetical protein At2g34160
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 96.1 bits (239), Expect = 3e-26
 Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 12/100 (12%)

Query: 18  ENEIRITTQGR-MRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQ 76
           +N I+++   + +  Y+  A   +Q+   N++ L A+G AI   V + E++K     + +
Sbjct: 2   KNRIQVSNTKKPLFFYVNLAKRYMQQY--NDVELSALGMAIATVVTVTEILKNNGFAVEK 59

Query: 77  NTSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKD 116
                  DI D                  + I ITL K +
Sbjct: 60  KIMTSIVDIKDDAR---------GRPVQKAKIEITLVKSE 90

>d2bkyx1 d.68.6.1 (X:4-89) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b2 [TaxId: 2287]} Length = 86

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Sulfolobus solfataricus, Sso10b2 [TaxId: 2287]

 Score = 92.9 bits (231), Expect = 4e-25
 Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 14/98 (14%)

Query: 18  ENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQN 77
            NEI +     + +++     L  + G +E++LK  GR I+K V +   +K R+    Q 
Sbjct: 2   LNEIVVRKTKNVEDHVLDVIVLFNQ-GIDEVILKGTGREISKAVDVYNSLKDRLGDGVQL 60

Query: 78  TSIGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKK 115
            ++ +          E         R +S I + L + 
Sbjct: 61  VNVQTGS--------EVR-----DRRRISYILLRLKRV 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	245
d2bkya1	89	DNA-binding protein AlbA {Archaeon Sulfolobus solf	99.93
d1nfja_	87	DNA-binding protein AlbA {Archaeon Archaeoglobus f	99.92
d1nh9a_	87	DNA-binding protein AlbA {Archaeon Methanococcus j	99.9
d2bkyx1	86	DNA-binding protein AlbA {Archaeon Sulfolobus solf	99.85
d1vm0a_	99	Hypothetical protein At2g34160 {Thale cress (Arabi	99.79

>d2bkya1 d.68.6.1 (A:9-97) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]

Probab=99.93  E-value=3.9e-26  Score=173.86  Aligned_cols=89  Identities=36%  Similarity=0.500  Sum_probs=84.0

Q ss_pred             CCeEEEcCCcchHHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHhCCceeeeEEEEEEecccccccccCCC
Q 025950           18 ENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLL   97 (245)
Q Consensus        18 ~NeIrVt~k~~i~~yV~~A~~lL~~~g~~eVvIka~G~AIsKAV~vAEILKrri~GLhQ~t~I~sv~i~d~~ePleEGl~   97 (245)
                      .|+|+|++|+.| +||.+|+.||++ +.++|+|||+|+||+|||+|||+||+||  |||.++|++++|.++|+|.+||  
T Consensus         1 ~n~I~IG~Kp~m-nYV~a~~~~l~~-g~~~V~iKArG~aIskAVdVaEiik~R~--l~~~~~i~~i~I~se~~~~~~G--   74 (89)
T d2bkya1           1 SNVVLIGKKPVM-NYVLAALTLLNQ-GVSEIVIKARGRAISKAVDTVEIVRNRF--LPDKIEIKEIRVGSQVVTSQDG--   74 (89)
T ss_dssp             CCEEECCSSCHH-HHHHHHHHHHHT-TCCEEEEEEETTHHHHHHHHHHHHHHHT--STTTEEEEEEEEEEEEEEETTS--
T ss_pred             CCEEEECCCcHH-HHHHHHHHHHhC-CCCeEEEEEehhhhHHHHHHHHHHHHhc--ccCceEEEEEEeccEEeecCCC--
Confidence            389999999755 999999999986 8999999999999999999999999998  9999999999999999999999  


Q ss_pred             cceeeeeeeeEEEEEecC
Q 025950           98 PLETTRHVSMITITLSKK  115 (245)
Q Consensus        98 ~~~~~R~Vs~I~ItLsk~  115 (245)
                         .+|+||+|+|+|+++
T Consensus        75 ---~~r~VS~IeI~L~kk   89 (89)
T d2bkya1          75 ---RQSRVSTIEIAIRKK   89 (89)
T ss_dssp             ---CEEEEEEEEEEEEEC
T ss_pred             ---cEEEEEEEEEEEEcC
Confidence               689999999999985

>d1nfja_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.92  E-value=4e-25  Score=167.71  Aligned_cols=87  Identities=32%  Similarity=0.474  Sum_probs=81.5

Q ss_pred             CCeEEEcCCcchHHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHhCCceeeeEEEEEEecccccccccCCC
Q 025950           18 ENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLL   97 (245)
Q Consensus        18 ~NeIrVt~k~~i~~yV~~A~~lL~~~g~~eVvIka~G~AIsKAV~vAEILKrri~GLhQ~t~I~sv~i~d~~ePleEGl~   97 (245)
                      +|+|+|++|+. .+||.+|+.||++ +.++|+|||+|+||++||+|||+||+|   |||.++|++++|.++|+|.+||  
T Consensus         1 en~I~Ig~Kp~-~~YV~~~~~~l~~-g~~eV~ikArG~aIs~AVdVaEi~k~r---~~~~~~i~~i~i~se~~~~e~g--   73 (87)
T d1nfja_           1 EHVVYVGNKPV-MNYVLATLTQLNE-GADEVVIKARGRAISRAVDVAEIVRNR---FMPGVKVKEIKIDTEELESEQG--   73 (87)
T ss_dssp             CEEEECCSSCH-HHHHHHHHHHHHT-TCSEEEEEEETTHHHHHHHHHHHHHHH---TCTTCEEEEEEEEEEECCCBTT--
T ss_pred             CCEEEEcCCcH-HHHHHHHHHHHhC-CCCEEEEEEehhHHHHHHHHHHHHHHh---ccCCcEEEEEEEccEEEecCCC--
Confidence            69999999965 5999999999986 899999999999999999999999999   5788899999999999999999  


Q ss_pred             cceeeeeeeeEEEEEec
Q 025950           98 PLETTRHVSMITITLSK  114 (245)
Q Consensus        98 ~~~~~R~Vs~I~ItLsk  114 (245)
                         .+|+||+|+|+|+|
T Consensus        74 ---~~r~VS~IeI~L~K   87 (87)
T d1nfja_          74 ---RRSNVSTIEIVLAK   87 (87)
T ss_dssp             ---BCCEEEEEEEEEEC
T ss_pred             ---ceeEEEEEEEEEeC
Confidence               67999999999986

>d1nh9a_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.90  E-value=1.2e-23  Score=159.45  Aligned_cols=86  Identities=34%  Similarity=0.433  Sum_probs=71.9

Q ss_pred             CCeEEEcCCcchHHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHhCCceeeeEEEEEEecccccccccCCC
Q 025950           18 ENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLL   97 (245)
Q Consensus        18 ~NeIrVt~k~~i~~yV~~A~~lL~~~g~~eVvIka~G~AIsKAV~vAEILKrri~GLhQ~t~I~sv~i~d~~ePleEGl~   97 (245)
                      +|+|+|++|+.| +||.+|+.+|++ + ++|+|||+|+||++||+|||+||+||...|   +|.+++|.++|+|.+||  
T Consensus         2 en~I~Ig~KP~m-~YV~~~~~~~~~-~-~eV~lKArG~aIsrAVdVaEiik~R~~~~~---~i~~i~i~se~~~~~~g--   73 (87)
T d1nh9a_           2 DNVVLIGKKPVM-NYVVAVLTQLTS-N-DEVIIKARGKAINKAVDVAEMIRNRFIKDI---KIKKIEIGTDKVKNPDG--   73 (87)
T ss_dssp             CSEEEECSSCHH-HHHHHHHHHHHH-C-SEEEEEEEGGGHHHHHHHHHHHHHHTCTTC---EEEEEEEEEEC--------
T ss_pred             CCEEEEcCCCHH-HHHHHHHHHhcc-C-CeEEEEEcchhhhHHHHHHHHHHHhccCCe---EEEEEEecceEEecCCC--
Confidence            699999999655 999999999997 4 899999999999999999999999986655   67778899999999999  


Q ss_pred             cceeeeeeeeEEEEEec
Q 025950           98 PLETTRHVSMITITLSK  114 (245)
Q Consensus        98 ~~~~~R~Vs~I~ItLsk  114 (245)
                         .+|+||+|+|+|+|
T Consensus        74 ---~~r~VS~IeI~L~k   87 (87)
T d1nh9a_          74 ---REVNVSTIEIVLAK   87 (87)
T ss_dssp             ----CCCEEEEEEEEEC
T ss_pred             ---ceeEEEEEEEEEeC
Confidence               68999999999986

>d2bkyx1 d.68.6.1 (X:4-89) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b2 [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Sulfolobus solfataricus, Sso10b2 [TaxId: 2287]

Probab=99.85  E-value=1.2e-21  Score=147.78  Aligned_cols=84  Identities=24%  Similarity=0.349  Sum_probs=73.7

Q ss_pred             CCeEEEcCCcchHHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHhCCceeeeEEEEEEecccccccccCCC
Q 025950           18 ENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLL   97 (245)
Q Consensus        18 ~NeIrVt~k~~i~~yV~~A~~lL~~~g~~eVvIka~G~AIsKAV~vAEILKrri~GLhQ~t~I~sv~i~d~~ePleEGl~   97 (245)
                      .|+|+|+.+.++.|||.+|+.||++ +.++|+|||+|+||+|||+|||+||+||.++||+++|+   +.++     +   
T Consensus         2 ~nei~~~~~kp~~nYV~a~i~~f~~-g~~eV~iKArG~aIskAVdVaEiir~R~~~~v~i~~I~---i~sE-----~---   69 (86)
T d2bkyx1           2 LNEIVVRKTKNVEDHVLDVIVLFNQ-GIDEVILKGTGREISKAVDVYNSLKDRLGDGVQLVNVQ---TGSE-----V---   69 (86)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHHT-TCCEEEEEEETTHHHHHHHHHHHHHHHHGGGEEEEEEE---EEEE-----E---
T ss_pred             CceEEEEcCCchHHHHHHHHHHHHC-CCCEEEEEEechhhHHHHHHHHHHHHhccCCeEEEEEE---eccc-----c---
Confidence            5999999999999999999999986 89999999999999999999999999998888766554   4433     2   


Q ss_pred             cceeeeeeeeEEEEEecC
Q 025950           98 PLETTRHVSMITITLSKK  115 (245)
Q Consensus        98 ~~~~~R~Vs~I~ItLsk~  115 (245)
                        ...|+||+|+|+|.+.
T Consensus        70 --~~~r~VS~IeI~l~k~   85 (86)
T d2bkyx1          70 --RDRRRISYILLRLKRV   85 (86)
T ss_dssp             --ETTEEEEEEEEEEEEC
T ss_pred             --CCceEEEEEEEEEEec
Confidence              2579999999999874

>d1vm0a_ d.68.6.2 (A:) Hypothetical protein At2g34160 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: Hypothetical protein At2g34160
domain: Hypothetical protein At2g34160
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.79  E-value=3e-19  Score=137.89  Aligned_cols=91  Identities=26%  Similarity=0.407  Sum_probs=77.1

Q ss_pred             CCCeEEEcC-CcchHHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHHhCCceeeeEEEEEEecccccccccC
Q 025950           17 NENEIRITT-QGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEG   95 (245)
Q Consensus        17 ~~NeIrVt~-k~~i~~yV~~A~~lL~~~g~~eVvIka~G~AIsKAV~vAEILKrri~GLhQ~t~I~sv~i~d~~ePleEG   95 (245)
                      .+|+|+|++ |.++.+||.+|+.||++  .++|+|+|+|+||++||+|||+||++...+|+.++|++.++.++.    ++
T Consensus         1 k~n~i~vs~~KkP~~~YV~~a~~~l~~--~~eV~l~a~G~AI~~aV~vaeil~~r~~~~i~~I~t~s~~~~~~~----~g   74 (99)
T d1vm0a_           1 KKNRIQVSNTKKPLFFYVNLAKRYMQQ--YNDVELSALGMAIATVVTVTEILKNNGFAVEKKIMTSIVDIKDDA----RG   74 (99)
T ss_dssp             CTTEEECCCTTSCHHHHHHHHHHHHHH--HSEEEEEEEGGGHHHHHHHHHHHHHTTSEEEEEEEEEEEEEC---------
T ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhcc--CCeEEEEecHHHHHHHHHHHHHHHhcCceEEEEEEeeeEEeecCC----CC
Confidence            379999997 66789999999999987  479999999999999999999999998889999999999987642    22


Q ss_pred             CCcceeeeeeeeEEEEEecCC-CC
Q 025950           96 LLPLETTRHVSMITITLSKKD-LD  118 (245)
Q Consensus        96 l~~~~~~R~Vs~I~ItLsk~~-lD  118 (245)
                           .+++||.|+|.|.+.+ ||
T Consensus        75 -----r~~~vs~IEI~L~K~~~F~   93 (99)
T d1vm0a_          75 -----RPVQKAKIEITLVKSEKFD   93 (99)
T ss_dssp             ------CEEEEEEEEEEEECTTHH
T ss_pred             -----cccccceEEEEEeeCccHH
Confidence                 5799999999999874 44