Citrus Sinensis ID: 026005

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-----
Protein Sequence
MINFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKESGGIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGDNKASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAVEKCKNRS
Secondary Structure (PSIPRED)
ccccHHHHccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccEEEEEEccccccEEEcccccccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHccccccccEEEcccccEEEcccccHHHHHHHccccEEEcccHHccccHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccHEEEEccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccEEEcccccHHHHHHHHHccccccccccHcccccccccEEEEEEccccccEHHEcHHHHccHHHHHHHHHHHHcccEEcccccccccccccHHHHHHHccccccEcEEEcccccEEEEccccHHHHHHHHHHHHEccccHHHcccHHHHHHHcccc
Coil and Loop (DISEMBL)
MINFEATElrlglpggnggsseggggggggekaknnningmkrgFADTVVDLKLnlstkesggidviektkgksasatgatdlskppaksqvvgwppvrsfRKNIMAVQkdneegdnkassssssnVAFVKVsmdgapylrKVDLKLYKSYQELSDALGKMfssftigncgsqgmkdfmnesklidllngsdyvptyedkdgdwmlvgdvpwdmfVDSCKRLRIMKgseaiglapravekcknrs
Flexible Loop (DISEMBL)
MINFEATELrlglpggnggssegggggggGEKAKNNNINGMKRGFADTVVDLKLNlstkesggidviektkgksasatgatdlskppaksqvvgwppvrSFRKNIMAVQKdneegdnkassssssnvafVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKgseaiglapravekcknrs
Low Complexity Region (SEG)
MINFEATELRLGLPggnggsseggggggggekaknnningMKRGFADTVVDLKLNLSTKESGGIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGDNKAssssssNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAVEKCKNRS
Disordered region (IsUnstruct)
********************************************FADTVVDLKLN************************************************************************AFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGL************
Disordered Region (DISOPRED)
MINFEATELRLGL********************************************************************************************************************VKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIG*******************LNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIM********************
Disordered Region (DISEMBL)
MINFEATELRLGLPGGNG************EKAKNNNINGMKRGFADTVVDLKLNLSTKESGGIDVIEKT**********************VGWPPVRSFRKNIMAVQ****************NVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRA********
Disordered Region (DISPRO)
MINFEATELRLGLPG*********************************************************************KPPAKSQVVGWPPVRSFRKNIMAVQ***************SNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAVE******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MINFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKESGGIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGDNKASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAVEKCKNRS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	245	2.2.26 [Sep-21-2011]
O24407	236	Auxin-responsive protein	yes	no	0.914	0.949	0.684	1e-86
P13089	243	Auxin-induced protein AUX	no	no	0.918	0.925	0.637	2e-81
Q38832	228	Auxin-responsive protein	no	no	0.930	1.0	0.639	4e-80
Q38825	243	Auxin-responsive protein	no	no	0.942	0.950	0.600	2e-77
P0C132	277	Auxin-responsive protein	yes	no	0.951	0.841	0.559	5e-71
P93830	229	Auxin-responsive protein	no	no	0.885	0.947	0.576	7e-70
Q9ZSY8	305	Auxin-responsive protein	no	no	0.975	0.783	0.498	3e-61
Q38826	321	Auxin-responsive protein	no	no	0.975	0.744	0.485	5e-61
Q75GK0	233	Auxin-responsive protein	no	no	0.840	0.884	0.484	9e-59
Q38827	338	Auxin-responsive protein	no	no	0.971	0.704	0.464	2e-56

>sp|O24407|IAA16_ARATH Auxin-responsive protein IAA16 OS=Arabidopsis thaliana GN=IAA16 PE=1 SV=1

 Score =  319 bits (818), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 176/257 (68%), Positives = 197/257 (76%), Gaps = 33/257 (12%)

Query: 1   MINFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKE 60
           MINFEATELRLGLPGGN G          GE A  NN    KRGF++TV DLKLNLS   
Sbjct: 1   MINFEATELRLGLPGGNHG----------GEMAGKNN---GKRGFSETV-DLKLNLS--- 43

Query: 61  SGGIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQK----DNEEGD 116
           S  +D + K   ++        + KPPAK+QVVGWPPVRSFRKN+M+ QK    D  EG+
Sbjct: 44  STAMDSVSKVDLENMKEK----VVKPPAKAQVVGWPPVRSFRKNVMSGQKPTTGDATEGN 99

Query: 117 NKASSSS--------SSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIG 168
           +K S SS         + VA+VKVSMDGAPYLRK+DLKLYK+YQ+LS+AL KMFSSFTIG
Sbjct: 100 DKTSGSSGATSSASACATVAYVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIG 159

Query: 169 NCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGS 228
           N G QGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPW+MFVDSCKR+RIMKGS
Sbjct: 160 NYGPQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIMKGS 219

Query: 229 EAIGLAPRAVEKCKNRS 245
           EAIGLAPRA+EKCKNRS
Sbjct: 220 EAIGLAPRALEKCKNRS 236

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.
Arabidopsis thaliana (taxid: 3702)

>sp|P13089|AUX28_SOYBN Auxin-induced protein AUX28 OS=Glycine max GN=AUX28 PE=2 SV=1

 Score =  301 bits (771), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 167/262 (63%), Positives = 187/262 (71%), Gaps = 37/262 (14%)

Query: 2   INFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADT----------VVD 51
           + FE TELRLGLPG NGG+ E               +   KRGF++T           VD
Sbjct: 1   MGFEETELRLGLPG-NGGTEE---------------VLIRKRGFSETETGHEDESATTVD 44

Query: 52  LKLNLSTKESGGI-----DVIEKTKGKSASATG-ATDLSKPPAKSQVVGWPPVRSFRKNI 105
           L LNLS+KE+        D  +K K      T    D +KPPAK+QVVGWPPVRSFRKN+
Sbjct: 45  LMLNLSSKEAATTAAAAADPTDKHKTLPKEKTLLPADPAKPPAKTQVVGWPPVRSFRKNM 104

Query: 106 MAVQKDNEEGDNKASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSF 165
           +AVQK   E   K   +SS N +FVKVSMDGAPYLRKVDLK+YKSY+ELSD+LGKMFSSF
Sbjct: 105 LAVQKSVGEESEK---NSSPNASFVKVSMDGAPYLRKVDLKMYKSYRELSDSLGKMFSSF 161

Query: 166 TIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIM 225
           T GNC SQGMKDFMNESKL DLLN SDYVPTYEDKDGDWMLVGDVPW+MFV+SCKRLRIM
Sbjct: 162 TFGNCESQGMKDFMNESKLNDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIM 221

Query: 226 KGSEAI--GLAPRAVEKCKNRS 245
           KG EAI  GLAPRA+ KCKNRS
Sbjct: 222 KGKEAIGLGLAPRAMAKCKNRS 243

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Glycine max (taxid: 3847)

>sp|Q38832|IAA14_ARATH Auxin-responsive protein IAA14 OS=Arabidopsis thaliana GN=IAA14 PE=1 SV=2

 Score =  297 bits (761), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 156/244 (63%), Positives = 181/244 (74%), Gaps = 16/244 (6%)

Query: 2   INFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKES 61
           +N + TEL LGLPGG          G G            KRGF++TV DLKLNL + + 
Sbjct: 1   MNLKETELCLGLPGGTETVESPAKSGVGN-----------KRGFSETV-DLKLNLQSNKQ 48

Query: 62  GGIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGDNKASS 121
           G +D+   T G     T   D SKPPAK+QVVGWPPVR++RKN+MA QK  E    +A S
Sbjct: 49  GHVDL--NTNGAPKEKTFLKDPSKPPAKAQVVGWPPVRNYRKNVMANQKSGEA--EEAMS 104

Query: 122 SSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNE 181
           S    VAFVKVSMDGAPYLRKVDLK+Y SY++LSDAL KMFSSFT+G+ G+QGM DFMNE
Sbjct: 105 SGGGTVAFVKVSMDGAPYLRKVDLKMYTSYKDLSDALAKMFSSFTMGSYGAQGMIDFMNE 164

Query: 182 SKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAVEKC 241
           SK++DLLN S+YVP+YEDKDGDWMLVGDVPW MFV+SCKRLRIMKGSEAIGLAPRA+EK 
Sbjct: 165 SKVMDLLNSSEYVPSYEDKDGDWMLVGDVPWPMFVESCKRLRIMKGSEAIGLAPRAMEKF 224

Query: 242 KNRS 245
           KNRS
Sbjct: 225 KNRS 228

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38825|IAA7_ARATH Auxin-responsive protein IAA7 OS=Arabidopsis thaliana GN=IAA7 PE=1 SV=1

 Score =  289 bits (739), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 152/253 (60%), Positives = 182/253 (71%), Gaps = 22/253 (8%)

Query: 1   MINFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKE 60
           ++N +ATEL LGLPGG            G            KRGF++TV DL LNL + +
Sbjct: 5   LMNLKATELCLGLPGGAEAVESPAKSAVGS-----------KRGFSETV-DLMLNLQSNK 52

Query: 61  SGGIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGDNKAS 120
            G +D ++         T   D SKPPAK+QVVGWPPVR++RKN+M  QK +  G  +AS
Sbjct: 53  EGSVD-LKNVSAVPKEKTTLKDPSKPPAKAQVVGWPPVRNYRKNMMTQQKTSS-GAEEAS 110

Query: 121 SS-------SSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQ 173
           S         ++    VKVSMDGAPYLRKVDLK+YKSYQ+LSDAL KMFSSFT+GN G+Q
Sbjct: 111 SEKAGNFGGGAAGAGLVKVSMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFTMGNYGAQ 170

Query: 174 GMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGL 233
           GM DFMNESKL++LLN S+YVP+YEDKDGDWMLVGDVPW+MFV+SCKRLRIMKGSEA+GL
Sbjct: 171 GMIDFMNESKLMNLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAVGL 230

Query: 234 APRAVEK-CKNRS 245
           APRA+EK CKNRS
Sbjct: 231 APRAMEKYCKNRS 243

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|P0C132|IAA30_ORYSJ Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica GN=IAA30 PE=2 SV=1

 Score =  267 bits (682), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 159/284 (55%), Positives = 186/284 (65%), Gaps = 51/284 (17%)

Query: 2   INFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLS---- 57
           + FEATELRLGLPGG G              A     +  KRGFA+T +DLKL L     
Sbjct: 5   LAFEATELRLGLPGGGGDGD---------AAAAAARSSSGKRGFAET-IDLKLKLEPAAA 54

Query: 58  -------------TKESGGIDVI------------------EKTKGKSASATGATDLSKP 86
                              +D++                  +++  +S+  T A D  KP
Sbjct: 55  AVDDDDDKEEAAADDREKKVDIVGADNDDASPPAAAAAGGMKRSPSQSSVVTAAADPEKP 114

Query: 87  PA-KSQVVGWPPVRSFRKNIMAVQ----KDNEEGDNKASSSSSSNVAFVKVSMDGAPYLR 141
            A K+QVVGWPPVRS+RKNI+AVQ    KD  +G    S + ++  AFVKVSMDGAPYLR
Sbjct: 115 RAPKAQVVGWPPVRSYRKNILAVQADKGKDAADGGGDKSGAGAAAAAFVKVSMDGAPYLR 174

Query: 142 KVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKD 201
           KVDLK+YKSY ELS AL KMFSSFTIGNCGS G+ + MNESK+ DLLNGS+YVPTYEDKD
Sbjct: 175 KVDLKMYKSYLELSKALEKMFSSFTIGNCGSHGV-NGMNESKIADLLNGSEYVPTYEDKD 233

Query: 202 GDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAVEKCKNRS 245
           GDWMLVGDVPW+MFV+SCKRLRIMKGSEAIGLAPRA+EKCKNRS
Sbjct: 234 GDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAMEKCKNRS 277

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P93830|IAA17_ARATH Auxin-responsive protein IAA17 OS=Arabidopsis thaliana GN=IAA17 PE=1 SV=2

 Score =  263 bits (672), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 144/250 (57%), Positives = 173/250 (69%), Gaps = 33/250 (13%)

Query: 2   INFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNL----S 57
           +N   TEL LGLPGG+  +                 + G KRGF++TV DLKLNL    +
Sbjct: 7   LNLRETELCLGLPGGDTVAP----------------VTGNKRGFSETV-DLKLNLNNEPA 49

Query: 58  TKESGGIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIM-AVQKDNEEGD 116
            KE      +     K  SA    D +KPPAK+QVVGWPPVRS+RKN+M + QK      
Sbjct: 50  NKEGSTTHDVVTFDSKEKSAC-PKDPAKPPAKAQVVGWPPVRSYRKNVMVSCQK------ 102

Query: 117 NKASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIG-NCGSQGM 175
              SS      AFVKVSMDGAPYLRK+DL++YKSY ELS+AL  MFSSFT+G + G +GM
Sbjct: 103 ---SSGGPEAAAFVKVSMDGAPYLRKIDLRMYKSYDELSNALSNMFSSFTMGKHGGEEGM 159

Query: 176 KDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAP 235
            DFMNE KL+DL+N  DYVP+YEDKDGDWMLVGDVPW MFVD+CKRLR+MKGS+AIGLAP
Sbjct: 160 IDFMNERKLMDLVNSWDYVPSYEDKDGDWMLVGDVPWPMFVDTCKRLRLMKGSDAIGLAP 219

Query: 236 RAVEKCKNRS 245
           RA+EKCK+R+
Sbjct: 220 RAMEKCKSRA 229

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZSY8|IAA27_ARATH Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=1 SV=1

 Score =  234 bits (598), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 135/271 (49%), Positives = 170/271 (62%), Gaps = 32/271 (11%)

Query: 2   INFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNL----S 57
           +NF+ATELRLGLPG    S E            +  ++G KR F+D + D    +    S
Sbjct: 38  LNFKATELRLGLPGSE--SPERVDSRFLALNKSSCPVSGAKRVFSDAINDSNKWVFSPGS 95

Query: 58  TKESGGI--------DVIEKTKGKSASATGA--------TDLSKPPAKSQVVGWPPVRSF 101
           T  +G +         V++   GKS + T          +  + P +K+QVVGWPP+RSF
Sbjct: 96  TTATGDVGSGSGPRTSVVK--DGKSTTFTKPAVPVKEKKSSATAPASKAQVVGWPPIRSF 153

Query: 102 RKNIMAVQKDNEEGDN------KASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELS 155
           RKN MA  +  + G+N      +A S       +VKVSM+GAPYLRK+DLK YKSY ELS
Sbjct: 154 RKNSMASSQSQKPGNNSETEEAEAKSGPEQPCLYVKVSMEGAPYLRKIDLKTYKSYLELS 213

Query: 156 DALGKMFSSFTIGNCGSQG--MKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWD 213
            AL KMFS FTIG  GS G   +D +NES+L DLL GS+YV TYEDKD DWMLVGDVPW+
Sbjct: 214 SALEKMFSCFTIGQFGSHGGCGRDGLNESRLTDLLRGSEYVVTYEDKDSDWMLVGDVPWE 273

Query: 214 MFVDSCKRLRIMKGSEAIGLAPRAVEKCKNR 244
           MF+ SCK+LRIMK SEAIGLAPR +EKC++R
Sbjct: 274 MFICSCKKLRIMKSSEAIGLAPRVMEKCRSR 304

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38826|IAA8_ARATH Auxin-responsive protein IAA8 OS=Arabidopsis thaliana GN=IAA8 PE=1 SV=1

 Score =  234 bits (596), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 134/276 (48%), Positives = 170/276 (61%), Gaps = 37/276 (13%)

Query: 2   INFEATELRLGLPGGNGGSSEGGGG--------------------GGGGEKAKNNNINGM 41
           +NF+ATELRLGLP       E   G                     G       N ++G 
Sbjct: 47  LNFKATELRLGLPESQSPERETDFGLLSPRTPDEKLLFPLLPSKDNGSATTGHKNVVSGN 106

Query: 42  KRGFADTVVDLK-LNLSTKESGGIDVIEKTKGKSASATGATDLSK--------PPAKSQV 92
           KRGFADT  +   +  S +  GGI+++   K K  S +   + S         P AK+QV
Sbjct: 107 KRGFADTWDEFSGVKGSVRPGGGINMMLSPKVKDVSKSIQEERSHAKGGLNNAPAAKAQV 166

Query: 93  VGWPPVRSFRKNIMA--VQKDNEEGDNKASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKS 150
           VGWPP+RS+RKN MA    K+ +E D K        V FVKVSMDGAPYLRKVDL+ Y S
Sbjct: 167 VGWPPIRSYRKNTMASSTSKNTDEVDGKPGL----GVLFVKVSMDGAPYLRKVDLRTYTS 222

Query: 151 YQELSDALGKMFSSFTIGNCGSQGM--KDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVG 208
           YQ+LS AL KMFS FT+G CG  G   ++ M+E KL DLL+GS++V TYEDKDGDWMLVG
Sbjct: 223 YQQLSSALEKMFSCFTLGQCGLHGAQGRERMSEIKLKDLLHGSEFVLTYEDKDGDWMLVG 282

Query: 209 DVPWDMFVDSCKRLRIMKGSEAIGLAPRAVEKCKNR 244
           DVPW++F ++C++L+IMKGS++IGLAP AVEK KN+
Sbjct: 283 DVPWEIFTETCQKLKIMKGSDSIGLAPGAVEKSKNK 318

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q75GK0|IAA11_ORYSJ Auxin-responsive protein IAA11 OS=Oryza sativa subsp. japonica GN=IAA11 PE=2 SV=1

 Score =  226 bits (577), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 129/266 (48%), Positives = 155/266 (58%), Gaps = 60/266 (22%)

Query: 2   INFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKES 61
           + F+ TELRLGLPG    ++   G                KRGFA+T+ DLKL L     
Sbjct: 4   LGFDETELRLGLPGAGELAARSSG----------------KRGFAETI-DLKLKLQPAAP 46

Query: 62  GGID-----------------------VIEKTKGKSASATGATDLSKPPA-KSQVVGWPP 97
             +                         ++++  +S+  T   D  KP A K+QVVGWPP
Sbjct: 47  AAVSGEEGAQEDKEDADAAAAAADEKMSMKRSASQSSVVTAEPDPDKPRAPKAQVVGWPP 106

Query: 98  VRSFRKNIMAVQKDNEEGDNKASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDA 157
           VRSFRKN++A                    A VKVSMDGAPYLRK+D+ +YKSY ELS A
Sbjct: 107 VRSFRKNVLA--------------EKCKAAALVKVSMDGAPYLRKIDVAMYKSYPELSMA 152

Query: 158 LGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVD 217
              MF+SFTIG CGS   +     +KL D L   +YVPTYEDKDGDWMLVGDVPW+MFV+
Sbjct: 153 FQNMFTSFTIGKCGSH--QQLKESNKLRDDL---EYVPTYEDKDGDWMLVGDVPWEMFVE 207

Query: 218 SCKRLRIMKGSEAIGLAPRAVEKCKN 243
           SCKRLRIMKGSEAIGLAPRAVEKCK+
Sbjct: 208 SCKRLRIMKGSEAIGLAPRAVEKCKS 233

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q38827|IAA9_ARATH Auxin-responsive protein IAA9 OS=Arabidopsis thaliana GN=IAA9 PE=1 SV=1

 Score =  219 bits (558), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 132/284 (46%), Positives = 173/284 (60%), Gaps = 46/284 (16%)

Query: 2   INFEATELRLGLPGGNGGSSEGGGGGGGGEK-------------------AKNNNINGMK 42
           I+ +ATEL LGLPG    + +         K                   ++ NN +G K
Sbjct: 61  ISLKATELTLGLPGSQSPARDTELNLLSPAKLDEKPFFPLLPSKDEICSSSQKNNASGNK 120

Query: 43  RGFADTV---------VDLKLNLSTKESGGIDVIEK-------TKGKSASATGATDLSKP 86
           RGF+DT+         V  + N    E+     + K        KG+S++   ++     
Sbjct: 121 RGFSDTMDQFAEAKSSVYTEKNWMFPEAAATQSVTKKDVPQNIPKGQSSTTNNSSSPPA- 179

Query: 87  PAKSQVVGWPPVRSFRKNIMAVQ-KDNEEGDNKASSSSSSNVAFVKVSMDGAPYLRKVDL 145
            AK+Q+VGWPPVRS+RKN +A   K+++E D +  S +     FVKVSMDGAPYLRKVDL
Sbjct: 180 -AKAQIVGWPPVRSYRKNTLATTCKNSDEVDGRPGSGA----LFVKVSMDGAPYLRKVDL 234

Query: 146 KLYKSYQELSDALGKMFSSFTIGNCGSQGM--KDFMNESKLIDLLNGSDYVPTYEDKDGD 203
           + Y +Y ELS AL KMF++FT+G CGS G   KD ++E+KL DLLNG DYV TYEDKDGD
Sbjct: 235 RSYTNYGELSSALEKMFTTFTLGQCGSNGAAGKDMLSETKLKDLLNGKDYVLTYEDKDGD 294

Query: 204 WMLVGDVPWDMFVDSCKRLRIMKGSEAIGL--APRAVEKCKNRS 245
           WMLVGDVPW+MF+D CK+L+IMKG +AIGL  APRA+EK K R+
Sbjct: 295 WMLVGDVPWEMFIDVCKKLKIMKGCDAIGLAAAPRAMEKSKMRA 338

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
224123424	246	predicted protein [Populus trichocarpa]	0.942	0.939	0.775	1e-97
224131258	250	predicted protein [Populus trichocarpa]	0.951	0.932	0.729	8e-94
255580939	257	Auxin-responsive protein IAA16, putative	0.946	0.902	0.719	2e-93
20385508	249	auxin-regulated protein [Populus tremula	0.942	0.927	0.722	3e-93
110826446	258	auxin-regulated protein [Populus tomento	0.959	0.910	0.716	2e-91
332167939	246	auxin-responsive protein [Gossypium hirs	0.914	0.910	0.726	4e-91
312282545	234	unnamed protein product [Thellungiella h	0.906	0.948	0.684	5e-88
224066307	237	predicted protein [Populus trichocarpa]	0.922	0.953	0.693	7e-88
157849760	231	indoleacetic acid-induced protein 16 [Br	0.902	0.956	0.694	1e-86
113700411	251	AUX/IAA16 B [Malus x domestica]	0.946	0.924	0.7	2e-86

>gi|224123424|ref|XP_002319075.1| predicted protein [Populus trichocarpa] gi|222857451|gb|EEE94998.1| predicted protein [Populus trichocarpa]

 Score =  361 bits (927), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 190/245 (77%), Positives = 206/245 (84%), Gaps = 14/245 (5%)

Query: 1   MINFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKE 60
           MINFE TELRLGLPGG G        G  GE AK+N     KRGF++TV DLKLNLSTKE
Sbjct: 14  MINFEETELRLGLPGGIGN-------GNDGEVAKSNG----KRGFSETV-DLKLNLSTKE 61

Query: 61  SG-GIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGDNKA 119
           SG G D  +  K K+ +   +TD +KPPAK+QVVGWPP+RSFRKN+MAVQK++ +   K 
Sbjct: 62  SGKGGDEEKVMKEKTVAPPASTDPAKPPAKAQVVGWPPIRSFRKNVMAVQKNSNDNGEK- 120

Query: 120 SSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFM 179
           S SS + VAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFM
Sbjct: 121 SGSSGTGVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFM 180

Query: 180 NESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAVE 239
           NESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPW+MFVDSCKRLRIMKGSEAIGLAPRAVE
Sbjct: 181 NESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLAPRAVE 240

Query: 240 KCKNR 244
           KCKNR
Sbjct: 241 KCKNR 245

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131258|ref|XP_002328494.1| predicted protein [Populus trichocarpa] gi|118484744|gb|ABK94241.1| unknown [Populus trichocarpa] gi|222838209|gb|EEE76574.1| predicted protein [Populus trichocarpa]

 Score =  348 bits (894), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 181/248 (72%), Positives = 200/248 (80%), Gaps = 15/248 (6%)

Query: 1   MINFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKE 60
           MIN+E TELRLGLPGG          G  GE AK N     KRGF++TV DLKLNLSTKE
Sbjct: 15  MINYEETELRLGLPGG-------ASNGNDGEAAKGNG----KRGFSETV-DLKLNLSTKE 62

Query: 61  SG--GIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKD-NEEGDN 117
           +G  G D  +    +   A    D +KPP+K+QVVGWPP+RSFRKN+MAVQK+ N+EG+ 
Sbjct: 63  TGKDGSDQEKVVMKEKTVAPRPNDPAKPPSKAQVVGWPPIRSFRKNVMAVQKNSNDEGEK 122

Query: 118 KASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKD 177
            +SS ++   AFVKVSMDGAPYLRKVDLKLYKSY+ELSDALGKMFSSFTIGNCGSQG KD
Sbjct: 123 ASSSGTTGTAAFVKVSMDGAPYLRKVDLKLYKSYRELSDALGKMFSSFTIGNCGSQGTKD 182

Query: 178 FMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRA 237
           FMNESKLIDLLN S+YVPTYEDKDGDWMLVGDVPW MFVDSCKRLRIMKGSEAIGLAPRA
Sbjct: 183 FMNESKLIDLLNSSEYVPTYEDKDGDWMLVGDVPWGMFVDSCKRLRIMKGSEAIGLAPRA 242

Query: 238 VEKCKNRS 245
           VEKCKNRS
Sbjct: 243 VEKCKNRS 250

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580939|ref|XP_002531288.1| Auxin-responsive protein IAA16, putative [Ricinus communis] gi|223529121|gb|EEF31101.1| Auxin-responsive protein IAA16, putative [Ricinus communis]

 Score =  347 bits (891), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 185/257 (71%), Positives = 209/257 (81%), Gaps = 25/257 (9%)

Query: 1   MINFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKE 60
           MINFE TELRLGLPGG+  +          E AK   +NG KRGF++TV DLKLNLSTKE
Sbjct: 14  MINFEETELRLGLPGGSNVND--------SEFAK---VNG-KRGFSETV-DLKLNLSTKE 60

Query: 61  SGGIDVI---EKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDN-EEGD 116
             G DVI   E  K K+   + + D +KPPAK+QVVGWPP+RSFRKN+MAVQK++ +EG+
Sbjct: 61  PSGKDVIVGEETMKEKATVPSSSNDPAKPPAKAQVVGWPPIRSFRKNVMAVQKNSTDEGE 120

Query: 117 NKASSSSS--------SNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIG 168
              ++S+         ++ AFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIG
Sbjct: 121 KGTATSAPAAAATSGSTSAAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIG 180

Query: 169 NCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGS 228
           NCGSQGMKDFMNESKLIDLLNGS+YVPTYEDKDGDWMLVGDVPW+MFV+SCKRLRIMKGS
Sbjct: 181 NCGSQGMKDFMNESKLIDLLNGSEYVPTYEDKDGDWMLVGDVPWEMFVNSCKRLRIMKGS 240

Query: 229 EAIGLAPRAVEKCKNRS 245
           EAIGLAPRAVEKCKNRS
Sbjct: 241 EAIGLAPRAVEKCKNRS 257

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20385508|gb|AAM21317.1|AF373100_1 auxin-regulated protein [Populus tremula x Populus tremuloides]

 Score =  347 bits (889), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 180/249 (72%), Positives = 198/249 (79%), Gaps = 18/249 (7%)

Query: 1   MINFEATELRLGLPGG--NGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLST 58
           M+NFE TELRLGLPGG  NG  SE     G             KRGF++TV DLKLNLST
Sbjct: 15  MMNFEETELRLGLPGGVSNGNDSEAAKSNG-------------KRGFSETV-DLKLNLST 60

Query: 59  KESG--GIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGD 116
           KE+G  G D  +    +   A    D +KPP+K+QVVGWPP+RSFRKN+MAVQK++ +  
Sbjct: 61  KETGKDGSDQEKVVMKEKTVAPRPNDPAKPPSKAQVVGWPPIRSFRKNVMAVQKNSNDEG 120

Query: 117 NKASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMK 176
            KASSS ++  AFVKVSMDGAPYLRKVDLKLYKSY+ELSDALGKMFSSFTIGNCGSQG K
Sbjct: 121 EKASSSGATGAAFVKVSMDGAPYLRKVDLKLYKSYRELSDALGKMFSSFTIGNCGSQGTK 180

Query: 177 DFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPR 236
           DFMNESKLIDLLN S+YVPTYEDKDGDWMLVGDVPW MFVDSCKRLRIMKGSEAIGLAPR
Sbjct: 181 DFMNESKLIDLLNSSEYVPTYEDKDGDWMLVGDVPWGMFVDSCKRLRIMKGSEAIGLAPR 240

Query: 237 AVEKCKNRS 245
           AVEKCKNRS
Sbjct: 241 AVEKCKNRS 249

Source: Populus tremula x Populus tremuloides

Species: Populus tremula x Populus tremuloides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110826446|gb|ABH01143.1| auxin-regulated protein [Populus tomentosa]

 Score =  341 bits (874), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 177/247 (71%), Positives = 199/247 (80%), Gaps = 12/247 (4%)

Query: 1   MINFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKE 60
           M+NFE TELRLGLPGG          G   E AK+N   G +  F++TV DLKLNLSTK+
Sbjct: 15  MMNFEETELRLGLPGGVSN-------GNDPEAAKSNGKRGQR--FSETV-DLKLNLSTKD 64

Query: 61  SG--GIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGDNK 118
           +G  G D  +    + A A    D +KPP+K+QVVGWPP+RSFRKN+MAVQK++ +   K
Sbjct: 65  TGKDGSDQEKAAMKEKAVAPRPNDPAKPPSKAQVVGWPPIRSFRKNVMAVQKNSNDEGEK 124

Query: 119 ASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDF 178
           ASSS ++  AFVKVSMDGAPYLRKVDLKLYKSY+ELSDALGKMFSSFTIGNCGSQG K+F
Sbjct: 125 ASSSGATGAAFVKVSMDGAPYLRKVDLKLYKSYRELSDALGKMFSSFTIGNCGSQGTKEF 184

Query: 179 MNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAV 238
           MNESKLIDLLN S+YVPTYEDKDGDWMLVGDVPW MFVDSCKRLRIMKGSEAIGLAPRAV
Sbjct: 185 MNESKLIDLLNSSEYVPTYEDKDGDWMLVGDVPWGMFVDSCKRLRIMKGSEAIGLAPRAV 244

Query: 239 EKCKNRS 245
           EKCKNRS
Sbjct: 245 EKCKNRS 251

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|332167939|gb|AEE25654.1| auxin-responsive protein [Gossypium hirsutum]

 Score =  340 bits (871), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 183/252 (72%), Positives = 201/252 (79%), Gaps = 28/252 (11%)

Query: 2   INFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKES 61
           INFE TELRLGLPG NG           GE  KNN     KRGF++TV +LKLNLS+KE+
Sbjct: 15  INFEETELRLGLPGANGND---------GETTKNNG----KRGFSETV-NLKLNLSSKET 60

Query: 62  GGIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQK--DNEEGDNKA 119
              D  +K K KS+     TD +KPPAK+QVVGWPPVRSFRKNIMAVQK    EEG +K 
Sbjct: 61  VAEDS-DKMKEKSS-----TDPAKPPAKAQVVGWPPVRSFRKNIMAVQKASSEEEGGSKK 114

Query: 120 SSSSSSNVA------FVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQ 173
           + +S++ +       FVKVSMDGAPYLRKVDLKLYKSYQ+LSDAL KMFSSFTIGNCGS 
Sbjct: 115 AGNSAAAITTTTAAAFVKVSMDGAPYLRKVDLKLYKSYQQLSDALSKMFSSFTIGNCGSH 174

Query: 174 GMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGL 233
           GMKDFMNESKLIDLLNGS+YVPTYEDKDGDWMLVGDVPW+MFVDSCKRLRIMKGSEAIGL
Sbjct: 175 GMKDFMNESKLIDLLNGSEYVPTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGL 234

Query: 234 APRAVEKCKNRS 245
           APRAVEKCKNRS
Sbjct: 235 APRAVEKCKNRS 246

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282545|dbj|BAJ34138.1| unnamed protein product [Thellungiella halophila]

 Score =  330 bits (845), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 176/257 (68%), Positives = 196/257 (76%), Gaps = 35/257 (13%)

Query: 1   MINFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKE 60
           MINFEATELRLGLPGGN G         G   AKNN     KRGF++TV DLKLNLS+  
Sbjct: 1   MINFEATELRLGLPGGNHG---------GDIAAKNNG----KRGFSETV-DLKLNLSSTA 46

Query: 61  SGGIDV--IEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEE---- 114
              +    I+  KGK         + KPPAK+QVVGWPPVRSFRKN+M+ QK   E    
Sbjct: 47  LDSVSEVDIQNLKGK---------VVKPPAKTQVVGWPPVRSFRKNVMSGQKQTTEVAAE 97

Query: 115 ------GDNKASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIG 168
                 G + A+SS+++ VA+VKVSMDGAPYLRK+DLKLYK+YQ+LSDAL KMFSSFTIG
Sbjct: 98  GTEKTCGSSGATSSANAAVAYVKVSMDGAPYLRKIDLKLYKTYQDLSDALSKMFSSFTIG 157

Query: 169 NCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGS 228
           N G QGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPW MFVDSCKR+RIMKGS
Sbjct: 158 NYGPQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWKMFVDSCKRIRIMKGS 217

Query: 229 EAIGLAPRAVEKCKNRS 245
           EAIGLAPRA+EKCKNRS
Sbjct: 218 EAIGLAPRALEKCKNRS 234

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066307|ref|XP_002302075.1| predicted protein [Populus trichocarpa] gi|222843801|gb|EEE81348.1| predicted protein [Populus trichocarpa] gi|429326564|gb|AFZ78622.1| hypothetical protein [Populus tomentosa]

 Score =  329 bits (843), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 170/245 (69%), Positives = 190/245 (77%), Gaps = 19/245 (7%)

Query: 2   INFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKES 61
           + FE TELRLGLPG         GGG  GE  +       KRGF++TV DLKL LS+KES
Sbjct: 9   MGFEETELRLGLPGN--------GGGAEGEMVR-------KRGFSETV-DLKLKLSSKES 52

Query: 62  GGIDVIEKTKG-KSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGDNKAS 120
           G     EKT   +      ATD +KPPAK+QVVGWPPVRSFRKN++AVQK +   D +  
Sbjct: 53  GADPNHEKTSSLQREKNLLATDPAKPPAKAQVVGWPPVRSFRKNMLAVQKSST--DQECE 110

Query: 121 SSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMN 180
                N  FVKVSMDGAPYLRKVDLK+YK+YQELSDALGKMFSSFTIGNCGS G+KDF+N
Sbjct: 111 KVPGGNATFVKVSMDGAPYLRKVDLKMYKTYQELSDALGKMFSSFTIGNCGSHGLKDFLN 170

Query: 181 ESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAVEK 240
           ESKLIDLLNG+DYVPTYEDKDGDWMLVGDVPWDMFV+SCKRLRIMKG+EA GLAPRA+EK
Sbjct: 171 ESKLIDLLNGTDYVPTYEDKDGDWMLVGDVPWDMFVESCKRLRIMKGTEATGLAPRAMEK 230

Query: 241 CKNRS 245
           CKNRS
Sbjct: 231 CKNRS 235

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|157849760|gb|ABV89663.1| indoleacetic acid-induced protein 16 [Brassica rapa]

 Score =  325 bits (832), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 177/255 (69%), Positives = 196/255 (76%), Gaps = 34/255 (13%)

Query: 1   MINFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTK- 59
           MINFEATELRLGLPGGN G          G+ A  NN    KRGF++TV DLKLNLS+  
Sbjct: 1   MINFEATELRLGLPGGNHG----------GDMAMKNN---GKRGFSETV-DLKLNLSSTA 46

Query: 60  --ESGGIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQK----DNE 113
                G+D +E  K K         + KPPAK+QVVGWPPVRSFRKN+M+ QK    D  
Sbjct: 47  LDSVSGVD-LENMKEK---------VVKPPAKAQVVGWPPVRSFRKNVMSGQKPTAGDAT 96

Query: 114 EGDNKASSS---SSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNC 170
           EG  K SSS   +SS  A+VKVSMDGAPYLRK+DLKLYK+YQ+LSDAL KMFSSFT+GN 
Sbjct: 97  EGTEKTSSSNGATSSAAAYVKVSMDGAPYLRKIDLKLYKTYQDLSDALSKMFSSFTLGNY 156

Query: 171 GSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEA 230
           G QGMKDFMNES+LIDLLNGSDYVPTYEDKDGDWMLVGDVPW MFVDSCKR+RIMKGSEA
Sbjct: 157 GPQGMKDFMNESRLIDLLNGSDYVPTYEDKDGDWMLVGDVPWGMFVDSCKRIRIMKGSEA 216

Query: 231 IGLAPRAVEKCKNRS 245
           IGLAPRA+EKCKNRS
Sbjct: 217 IGLAPRALEKCKNRS 231

Source: Brassica rapa

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|113700411|gb|ABI36494.1| AUX/IAA16 B [Malus x domestica]

 Score =  324 bits (831), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 175/250 (70%), Positives = 198/250 (79%), Gaps = 18/250 (7%)

Query: 1   MINFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKE 60
           +INFE TELRLGLPGG   ++     G  GE +KN      KRGFA+TV DLKLN+S+++
Sbjct: 15  LINFEETELRLGLPGGILSTA-----GKDGEASKNTG----KRGFAETV-DLKLNISSED 64

Query: 61  SGGID---VIEKTKGKS-ASATGATDLSKP-PAKSQVVGWPPVRSFRKNIMAVQKDNEEG 115
               D   V++  K K  A    + D +KP  AK+QVVGWPPVRSFR NI+AVQKD  + 
Sbjct: 65  QSAGDEDQVVDMKKEKDVAPVPRSNDPTKPHAAKAQVVGWPPVRSFRXNILAVQKDVSDE 124

Query: 116 DNKASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGM 175
             K +S S+   AFVKVSMDGAPYLRKVDLKLYKSYQELS ALGKMFSSFTIG+ GSQGM
Sbjct: 125 GEKTNSXSA---AFVKVSMDGAPYLRKVDLKLYKSYQELSTALGKMFSSFTIGSYGSQGM 181

Query: 176 KDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAP 235
           KDFMNESKLIDLLNGS+YVPTYEDKDGDWMLVGDVPW+MFV+SCKRLRIM+GSEAIGLAP
Sbjct: 182 KDFMNESKLIDLLNGSEYVPTYEDKDGDWMLVGDVPWEMFVNSCKRLRIMRGSEAIGLAP 241

Query: 236 RAVEKCKNRS 245
           RAVEKCKNRS
Sbjct: 242 RAVEKCKNRS 251

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
TAIR|locus:2084933	236	IAA16 "indoleacetic acid-induc	0.8	0.830	0.694	1.1e-71
TAIR|locus:2129900	228	IAA14 "indole-3-acetic acid in	0.812	0.872	0.696	4.8e-71
TAIR|locus:2094598	243	IAA7 "indole-3-acetic acid 7"	0.946	0.954	0.587	2.4e-69
TAIR|locus:2018374	229	AXR3 "AT1G04250" [Arabidopsis	0.783	0.838	0.630	3.8e-62
TAIR|locus:2169955	338	IAA9 "indole-3-acetic acid ind	0.816	0.591	0.533	1.6e-55
UNIPROTKB|Q5Z749	266	IAA21 "Auxin-responsive protei	0.959	0.883	0.490	2.4e-53
TAIR|locus:2119976	305	PAP2 "AT4G29080" [Arabidopsis	0.689	0.554	0.606	5.6e-52
UNIPROTKB|Q75GK0	233	IAA11 "Auxin-responsive protei	0.640	0.673	0.625	8.5e-49
UNIPROTKB|Q75GB1	257	IAA17 "Auxin-responsive protei	0.893	0.852	0.462	7.9e-46
UNIPROTKB|Q5NB25	263	IAA3 "Auxin-responsive protein	0.885	0.825	0.463	3.1e-44

TAIR|locus:2084933 IAA16 "indoleacetic acid-induced protein 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
 Identities = 150/216 (69%), Positives = 171/216 (79%)

Query:    42 KRGFADTVVDLKLNLSTKESGGIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSF 101
             KRGF++TV DLKLNLS   S  +D + K   ++        + KPPAK+QVVGWPPVRSF
Sbjct:    29 KRGFSETV-DLKLNLS---STAMDSVSKVDLENMKEK----VVKPPAKAQVVGWPPVRSF 80

Query:   102 RKNIMAVQK----DNEEGDNK--------AXXXXXXNVAFVKVSMDGAPYLRKVDLKLYK 149
             RKN+M+ QK    D  EG++K        +       VA+VKVSMDGAPYLRK+DLKLYK
Sbjct:    81 RKNVMSGQKPTTGDATEGNDKTSGSSGATSSASACATVAYVKVSMDGAPYLRKIDLKLYK 140

Query:   150 SYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGD 209
             +YQ+LS+AL KMFSSFTIGN G QGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGD
Sbjct:   141 TYQDLSNALSKMFSSFTIGNYGPQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGD 200

Query:   210 VPWDMFVDSCKRLRIMKGSEAIGLAPRAVEKCKNRS 245
             VPW+MFVDSCKR+RIMKGSEAIGLAPRA+EKCKNRS
Sbjct:   201 VPWEMFVDSCKRIRIMKGSEAIGLAPRALEKCKNRS 236

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2129900 IAA14 "indole-3-acetic acid inducible 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 719 (258.2 bits), Expect = 4.8e-71, P = 4.8e-71
 Identities = 142/204 (69%), Positives = 165/204 (80%)

Query:    42 KRGFADTVVDLKLNLSTKESGGIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSF 101
             KRGF++TV DLKLNL + + G +D+   T G     T   D SKPPAK+QVVGWPPVR++
Sbjct:    30 KRGFSETV-DLKLNLQSNKQGHVDL--NTNGAPKEKTFLKDPSKPPAKAQVVGWPPVRNY 86

Query:   102 RKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKM 161
             RKN+MA QK  E    +A       VAFVKVSMDGAPYLRKVDLK+Y SY++LSDAL KM
Sbjct:    87 RKNVMANQKSGEA--EEAMSSGGGTVAFVKVSMDGAPYLRKVDLKMYTSYKDLSDALAKM 144

Query:   162 FSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKR 221
             FSSFT+G+ G+QGM DFMNESK++DLLN S+YVP+YEDKDGDWMLVGDVPW MFV+SCKR
Sbjct:   145 FSSFTMGSYGAQGMIDFMNESKVMDLLNSSEYVPSYEDKDGDWMLVGDVPWPMFVESCKR 204

Query:   222 LRIMKGSEAIGLAPRAVEKCKNRS 245
             LRIMKGSEAIGLAPRA+EK KNRS
Sbjct:   205 LRIMKGSEAIGLAPRAMEKFKNRS 228

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010102 "lateral root morphogenesis" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

TAIR|locus:2094598 IAA7 "indole-3-acetic acid 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 703 (252.5 bits), Expect = 2.4e-69, P = 2.4e-69
 Identities = 148/252 (58%), Positives = 177/252 (70%)

Query:     1 MINFEATELRLGLPXXXXXXXXXXXXXXXXXXXXXXXXXXMKRGFADTVVDLKLNLSTKE 60
             ++N +ATEL LGLP                           KRGF++TV DL LNL + +
Sbjct:     5 LMNLKATELCLGLPGGAEAVESPAKSAVGS-----------KRGFSETV-DLMLNLQSNK 52

Query:    61 SGGIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDN---EEGDN 117
              G +D ++         T   D SKPPAK+QVVGWPPVR++RKN+M  QK +   EE  +
Sbjct:    53 EGSVD-LKNVSAVPKEKTTLKDPSKPPAKAQVVGWPPVRNYRKNMMTQQKTSSGAEEASS 111

Query:   118 KAXXXXXXNVA---FVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQG 174
             +         A    VKVSMDGAPYLRKVDLK+YKSYQ+LSDAL KMFSSFT+GN G+QG
Sbjct:   112 EKAGNFGGGAAGAGLVKVSMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFTMGNYGAQG 171

Query:   175 MKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLA 234
             M DFMNESKL++LLN S+YVP+YEDKDGDWMLVGDVPW+MFV+SCKRLRIMKGSEA+GLA
Sbjct:   172 MIDFMNESKLMNLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAVGLA 231

Query:   235 PRAVEK-CKNRS 245
             PRA+EK CKNRS
Sbjct:   232 PRAMEKYCKNRS 243

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009733 "response to auxin stimulus" evidence=TAS

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009630 "gravitropism" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009269 "response to desiccation" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0009414 "response to water deprivation" evidence=IMP

TAIR|locus:2018374 AXR3 "AT1G04250" [Arabidopsis thaliana (taxid:3702)]

 Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
 Identities = 133/211 (63%), Positives = 162/211 (76%)

Query:    42 KRGFADTVVDLKLNLSTK---ESGGI--DVIE-KTKGKSASATGATDLSKPPAKSQVVGW 95
             KRGF++TV DLKLNL+ +   + G    DV+   +K KSA      D +KPPAK+QVVGW
Sbjct:    31 KRGFSETV-DLKLNLNNEPANKEGSTTHDVVTFDSKEKSACPK---DPAKPPAKAQVVGW 86

Query:    96 PPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELS 155
             PPVRS+RKN+M   + +  G   A        AFVKVSMDGAPYLRK+DL++YKSY ELS
Sbjct:    87 PPVRSYRKNVMVSCQKSSGGPEAA--------AFVKVSMDGAPYLRKIDLRMYKSYDELS 138

Query:   156 DALGKMFSSFTIG-NCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDM 214
             +AL  MFSSFT+G + G +GM DFMNE KL+DL+N  DYVP+YEDKDGDWMLVGDVPW M
Sbjct:   139 NALSNMFSSFTMGKHGGEEGMIDFMNERKLMDLVNSWDYVPSYEDKDGDWMLVGDVPWPM 198

Query:   215 FVDSCKRLRIMKGSEAIGLAPRAVEKCKNRS 245
             FVD+CKRLR+MKGS+AIGLAPRA+EKCK+R+
Sbjct:   199 FVDTCKRLRLMKGSDAIGLAPRAMEKCKSRA 229

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009734 "auxin mediated signaling pathway" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009733 "response to auxin stimulus" evidence=IEP;IMP;TAS

GO:0042802 "identical protein binding" evidence=IPI

TAIR|locus:2169955 IAA9 "indole-3-acetic acid inducible 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 546 (197.3 bits), Expect = 1.6e-55, Sum P(2) = 1.6e-55
 Identities = 119/223 (53%), Positives = 151/223 (67%)

Query:    42 KRGFADTV---VDLKLNLSTK------ESGGIDVIEKTK-----GKSASATGATDLSKPP 87
             KRGF+DT+    + K ++ T+      E+     + K        K  S+T     S P 
Sbjct:   120 KRGFSDTMDQFAEAKSSVYTEKNWMFPEAAATQSVTKKDVPQNIPKGQSSTTNNSSSPPA 179

Query:    88 AKSQVVGWPPVRSFRKNIMAVQ-KDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLK 146
             AK+Q+VGWPPVRS+RKN +A   K+++E D +          FVKVSMDGAPYLRKVDL+
Sbjct:   180 AKAQIVGWPPVRSYRKNTLATTCKNSDEVDGRPGS----GALFVKVSMDGAPYLRKVDLR 235

Query:   147 LYKSYQELSDALGKMFSSFTIGNCGSQGM--KDFMNESKLIDLLNGSDYVPTYEDKDGDW 204
              Y +Y ELS AL KMF++FT+G CGS G   KD ++E+KL DLLNG DYV TYEDKDGDW
Sbjct:   236 SYTNYGELSSALEKMFTTFTLGQCGSNGAAGKDMLSETKLKDLLNGKDYVLTYEDKDGDW 295

Query:   205 MLVGDVPWDMFVDSCKRLRIMKGSEAIGLA--PRAVEKCKNRS 245
             MLVGDVPW+MF+D CK+L+IMKG +AIGLA  PRA+EK K R+
Sbjct:   296 MLVGDVPWEMFIDVCKKLKIMKGCDAIGLAAAPRAMEKSKMRA 338

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009734 "auxin mediated signaling pathway" evidence=TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=TAS

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

UNIPROTKB|Q5Z749 IAA21 "Auxin-responsive protein IAA21" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
 Identities = 123/251 (49%), Positives = 154/251 (61%)

Query:     6 ATELRLGLPXXXXXXXXXXXXXXXXXXXXXXXXXX----MKRGFADTVVDLKLNLSTKES 61
             ATELRLGLP                               KRGFAD +V        + +
Sbjct:    21 ATELRLGLPGTAEEAESEGGGGGGTDAAPLTLELLPKGGAKRGFADAIVGGPAGQRREAA 80

Query:    62 GGIDVIEKTKGKSASATGATDLSK---PPAKSQVVGWPPVRSFRKNIMAVQKDNEEG--D 116
             GG     K    +A A    +  K   P AK+QVVGWPP+RS+RKN MA+ +   +G  D
Sbjct:    81 GG-----KAAAAAAEAEEEEEKKKAQAPAAKAQVVGWPPIRSYRKNTMAMSQPALKGKDD 135

Query:   117 NKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGM- 175
              +A         +VKVSMDGAPYLRKVDLK+YK+Y+ELS AL KMFS FT+G+  S G  
Sbjct:   136 GEAKQAPASGCLYVKVSMDGAPYLRKVDLKMYKNYKELSLALEKMFSCFTVGHGESNGKS 195

Query:   176 -KDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLA 234
              +D +++ +L+DL NG++ V TYEDKD DWMLVGDVPW MF DSC+RLRIMKGS+A+GLA
Sbjct:   196 GRDGLSDCRLMDLKNGTELVLTYEDKDEDWMLVGDVPWRMFTDSCRRLRIMKGSDAVGLA 255

Query:   235 PRAVEKCKNRS 245
             PRA +K KNR+
Sbjct:   256 PRATDKSKNRN 266

GO:0009733 "response to auxin stimulus" evidence=IC

TAIR|locus:2119976 PAP2 "AT4G29080" [Arabidopsis thaliana (taxid:3702)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 111/183 (60%), Positives = 133/183 (72%)

Query:    71 KGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGDN------KAXXXXX 124
             K K +SAT       P +K+QVVGWPP+RSFRKN MA  +  + G+N      +A     
Sbjct:   129 KEKKSSATA------PASKAQVVGWPPIRSFRKNSMASSQSQKPGNNSETEEAEAKSGPE 182

Query:   125 XNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGM--KDFMNES 182
                 +VKVSM+GAPYLRK+DLK YKSY ELS AL KMFS FTIG  GS G   +D +NES
Sbjct:   183 QPCLYVKVSMEGAPYLRKIDLKTYKSYLELSSALEKMFSCFTIGQFGSHGGCGRDGLNES 242

Query:   183 KLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAVEKCK 242
             +L DLL GS+YV TYEDKD DWMLVGDVPW+MF+ SCK+LRIMK SEAIGLAPR +EKC+
Sbjct:   243 RLTDLLRGSEYVVTYEDKDSDWMLVGDVPWEMFICSCKKLRIMKSSEAIGLAPRVMEKCR 302

Query:   243 NRS 245
             +R+
Sbjct:   303 SRN 305

GO:0005622 "intracellular" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006417 "regulation of translation" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=ISS;TAS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007389 "pattern specification process" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

UNIPROTKB|Q75GK0 IAA11 "Auxin-responsive protein IAA11" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 112/179 (62%), Positives = 133/179 (74%)

Query:    67 IEKTKGKSASATGATDLSKPPA-KSQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXX 125
             ++++  +S+  T   D  KP A K+QVVGWPPVRSFRKN++A +K       KA      
Sbjct:    75 MKRSASQSSVVTAEPDPDKPRAPKAQVVGWPPVRSFRKNVLA-EKC------KAA----- 122

Query:   126 NVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGS-QGMKDFMNESKL 184
               A VKVSMDGAPYLRK+D+ +YKSY ELS A   MF+SFTIG CGS Q +K+    +KL
Sbjct:   123 --ALVKVSMDGAPYLRKIDVAMYKSYPELSMAFQNMFTSFTIGKCGSHQQLKE---SNKL 177

Query:   185 IDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAVEKCKN 243
              D L   +YVPTYEDKDGDWMLVGDVPW+MFV+SCKRLRIMKGSEAIGLAPRAVEKCK+
Sbjct:   178 RDDL---EYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAVEKCKS 233

GO:0009733 "response to auxin stimulus" evidence=IC

UNIPROTKB|Q75GB1 IAA17 "Auxin-responsive protein IAA17" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
 Identities = 118/255 (46%), Positives = 146/255 (57%)

Query:     3 NFEATELRLGLPXXXXXXXXXXXXXXXXXXXXXXXXXXMKRGFADTVVDLKLNLSTKESG 62
             + + TELRLGLP                           KRGF+D    L  + +   + 
Sbjct:    27 DLKGTELRLGLPGSHSPDRSPPAATLDLLPAAKGA----KRGFSDEARPLPASAAAAAAA 82

Query:    63 GIDVIEKTKGKSASA----TGATDLSK--------PPAKSQVVGWPPVRSFRKNIMAVQK 110
             G       KGK A+A      A +  K        P AK+QVVGWPP+RS+RKN MA  +
Sbjct:    83 G-------KGKKAAAGEEDEDAEEEDKKVAAAPQAPAAKAQVVGWPPIRSYRKNTMATNQ 135

Query:   111 DNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNC 170
                  ++ A         +VKVSMDGAPYLRKVDLK YK+Y++LS AL KMF  FT G  
Sbjct:   136 LKSSKED-AEAKQGQGFLYVKVSMDGAPYLRKVDLKTYKNYKDLSTALEKMFIGFTTG-- 192

Query:   171 GSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEA 230
                  KD ++ES+        +YV TYEDKDGDWMLVGDVPW+MF +SC+RLRIMKGS+A
Sbjct:   193 -----KDGLSESR-----KDGEYVLTYEDKDGDWMLVGDVPWEMFANSCRRLRIMKGSDA 242

Query:   231 IGLAPRAVEKCKNRS 245
             IGLAPRAV+K KNR+
Sbjct:   243 IGLAPRAVDKSKNRN 257

GO:0009733 "response to auxin stimulus" evidence=ISS

UNIPROTKB|Q5NB25 IAA3 "Auxin-responsive protein IAA3" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 120/259 (46%), Positives = 144/259 (55%)

Query:     2 INFEATELRLGLPXXXXXXXXXXXXXXXXXXXXXXX---XXXMKRGFADTVVDLKLNLST 58
             ++ + TELRLGLP                              KR F D   +  L   T
Sbjct:    32 VDLKGTELRLGLPGSESPDRRPAAIAAAAATATTLELLPAKGAKRVFPD---EAALTPPT 88

Query:    59 KESGGIDVIEKTKGKSA---SATGATDLSK----PP---AKSQVVGWPPVRSFRKNIMAV 108
               +G        KGK+A      GA +  K    PP   AK+QVVGWPP+RS+RKN MA 
Sbjct:    89 AAAG--------KGKAAREGEEVGAEEEDKKVAAPPQPAAKAQVVGWPPIRSYRKNTMAT 140

Query:   109 Q--KDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFT 166
                K N+E D  A         +VKVSMDGAPYLRKVDLK YK+Y+++S  L KMF  F+
Sbjct:   141 NQIKSNKE-DVDAKQGQ--GFLYVKVSMDGAPYLRKVDLKTYKNYKDMSLGLEKMFIGFS 197

Query:   167 IGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMK 226
              G  G++  KD              +YV TYEDKDGDWMLVGDVPW+MF DSC+RLRIMK
Sbjct:   198 TGKEGAENQKD-------------GEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMK 244

Query:   227 GSEAIGLAPRAVEKCKNRS 245
             GS+AIGLAPRA EK KNR+
Sbjct:   245 GSDAIGLAPRAGEKSKNRN 263

GO:0009733 "response to auxin stimulus" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P0C132	IAA30_ORYSJ	No assigned EC number	0.5598	0.9510	0.8411	yes	no
O24407	IAA16_ARATH	No assigned EC number	0.6848	0.9142	0.9491	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0003037201 hypothetical protein (237 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	245
pfam02309	188	pfam02309, AUX_IAA, AUX/IAA family	8e-98

>gnl|CDD|216968 pfam02309, AUX_IAA, AUX/IAA family

 Score =  283 bits (725), Expect = 8e-98
 Identities = 127/235 (54%), Positives = 150/235 (63%), Gaps = 48/235 (20%)

Query: 3   NFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKESG 62
           N +ATELRLGLPGG+   SE             +++   KRGF++   D           
Sbjct: 2   NLKATELRLGLPGGSEPESEPST----------SSVTSNKRGFSEVTED----------- 40

Query: 63  GIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGDNKASSS 122
           GI         + S +   D +KPPAK+QVVGWPPVRS+RKN +  +K            
Sbjct: 41  GISSSLGEDKSTISVSSNGDSAKPPAKAQVVGWPPVRSYRKNSLREKK------------ 88

Query: 123 SSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNES 182
              + ++VKVSMDGAPYLRKVDLK+YKSY ELS AL KMFS FTIG            ES
Sbjct: 89  ---SGSYVKVSMDGAPYLRKVDLKMYKSYDELSSALEKMFSCFTIG------------ES 133

Query: 183 KLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRA 237
            L+DLLNGS+YVPTYEDKDGDWMLVGDVPW+MFV+SCKRLRIMKGSEAIGLAPR+
Sbjct: 134 GLLDLLNGSEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRS 188

Transcription of the AUX/IAA family of genes is rapidly induced by the plant hormone auxin. Some members of this family are longer and contain an N terminal DNA binding domain. The function of this region is uncertain. Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	245
PF02309	215	AUX_IAA: AUX/IAA family; InterPro: IPR003311 The A	100.0
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	97.55
cd06398	91	PB1_Joka2 The PB1 domain is present in the Nicotia	97.22
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	97.18
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	97.04
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	96.99
cd06396	81	PB1_NBR1 The PB1 domain is an essential part of NB	96.76
cd06401	81	PB1_TFG The PB1 domain found in TFG protein, an on	96.22
cd06403	80	PB1_Par6 The PB1 domain is an essential part of Pa	96.19
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	95.62
cd06402	87	PB1_p62 The PB1 domain is an essential part of p62	95.6
cd06404	83	PB1_aPKC PB1 domain is an essential modular domain	95.42
cd06397	82	PB1_UP1 Uncharacterized protein 1. The PB1 domain	94.51
cd06408	86	PB1_NoxR The PB1 domain is present in the Epichloe	92.07

>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []

Probab=100.00  E-value=7.2e-70  Score=476.34  Aligned_cols=212  Identities=56%  Similarity=0.914  Sum_probs=6.0

Q ss_pred             CCCcccccccCCCCCCCCCCCCCCCCCCCCCcccCccCCCCCCCchhhhhhhcccCCCCCCCc-cccccccCCcCCC-C-
Q 026005            2 INFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKESGGI-DVIEKTKGKSASA-T-   78 (245)
Q Consensus         2 lnlk~TELRLGLPG~~~~~~~~~~~~~~~~~~~~~~~~~~KRgfsdt~idl~~~~~~~~~~~~-~~~~~~~~~~~~~-~-   78 (245)
                      ||||+|||||||||+.+++.       ..........+++||+|+++ |+............. ............. . 
T Consensus         1 ln~~~TELrLGLPG~~~~~~-------~~~~~~~~~~~~~kR~F~~a-id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (215)
T PF02309_consen    1 LNLKATELRLGLPGSESPDA-------SSSSSSKKSSSGNKRGFSEA-IDSSSSNSQSSSSSSSDSSSSSSSSSTSSSSS   72 (215)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCchhhhhcccCCCCCCCCc-------ccccccccccCcccccchhh-hhhcccccccccccccccCccccccccccccc
Confidence            89999999999999987631       01112223458999999998 776441000000000 0000000000000 0 


Q ss_pred             CCCCCCCCCCCCCCCCCCCccchhhhhhhhcccCcccccccCCCCCCCcceEEEEecCccccceeecCCccCHHHHHHHH
Q 026005           79 GATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGDNKASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDAL  158 (245)
Q Consensus        79 ~~~~~~~p~akaqvVGWPPVrs~RkN~~~~~~~~~~~~~~~~~~~~~~~~~VKV~MdG~pigRKVDL~~~~sY~~L~~aL  158 (245)
                      .......|.+++|+||||||++||||.+....            ....++||||+|||+||||||||++|+||++|+.+|
T Consensus        73 ~~~~~~~p~~~~~~vgwpp~~s~r~n~~~~~~------------~~~~~~~vKV~mdG~~igRkVDL~~~~sY~~L~~~L  140 (215)
T PF02309_consen   73 DSSSSSPPASKAQVVGWPPVRSFRKNSLSEKQ------------SSSSRSYVKVNMDGVPIGRKVDLSAYSSYEELSSAL  140 (215)
T ss_dssp             -------------BTTBS----S---------------------------------------------------------
T ss_pred             ccccCCCCcccccccCCCcccccccccccccc------------cccCCceeEEEecCcccceecCHHHhhCHHHHHHHH
Confidence            01122345578999999999999999876211            122479999999999999999999999999999999


Q ss_pred             HhhhcccccCCcCCCCCccccchhhhhhccCCCceeeEEEcCCCCeEeccCCChhhhhhcceeeEEecCCcccCCCchh
Q 026005          159 GKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRA  237 (245)
Q Consensus       159 e~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwMLVGDvPW~mFv~svKRLrImk~sea~gl~~~~  237 (245)
                      ++||.+|.|++|++++    .++..+.++.++++|+|||||+||||||||||||+|||++|||||||+.+|++||+||+
T Consensus       141 ~~MF~~~~i~~~~~~~----~~~~~~~~~~~~~~~~l~Y~D~egd~mlvGD~PW~~F~~~vkRl~I~~~~e~~~~~~r~  215 (215)
T PF02309_consen  141 EKMFSCFSIEQCGSHG----LNESGLLDLLNGSEYVLVYEDKEGDWMLVGDVPWEEFVKSVKRLRIMKSSEAKGLAPRA  215 (215)
T ss_dssp             -------------------------------------------------------------------------------
T ss_pred             HHhcCCCCcccccccc----ccchhhccccCCcceeEEEECCCCCEEEecCCCHHHHHHHhhccEEecHHHhcccCCCC
Confidence            9999988888888754    56677788888899999999999999999999999999999999999999999999996

The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=97.55  E-value=0.00017  Score=53.35  Aligned_cols=67  Identities=24%  Similarity=0.392  Sum_probs=54.6

Q ss_pred             eEEEEecCccccceeecCCccCHHHHHHHHHhhhcccccCCcCCCCCccccchhhhhhccCCCceeeEEEcCCCCeEecc
Q 026005          129 FVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVG  208 (245)
Q Consensus       129 ~VKV~MdG~pigRKVDL~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwMLVG  208 (245)
                      -|||...|.. =|.+.+..--+|++|...+++.|...                        ...+.+.|.|.||||..+-
T Consensus         3 ~vK~~~~~~~-~~~~~~~~~~s~~~L~~~i~~~~~~~------------------------~~~~~l~Y~D~dgD~V~i~   57 (84)
T PF00564_consen    3 RVKVRYGGDI-RRIISLPSDVSFDDLRSKIREKFGLL------------------------DEDFQLKYKDEDGDLVTIS   57 (84)
T ss_dssp             EEEEEETTEE-EEEEEECSTSHHHHHHHHHHHHHTTS------------------------TSSEEEEEEETTSSEEEES
T ss_pred             EEEEEECCee-EEEEEcCCCCCHHHHHHHHHHHhCCC------------------------CccEEEEeeCCCCCEEEeC
Confidence            4799999973 33588888889999999999999851                        3468999999999999887


Q ss_pred             C-CChhhhhhcce
Q 026005          209 D-VPWDMFVDSCK  220 (245)
Q Consensus       209 D-vPW~mFv~svK  220 (245)
                      + .=|++.++.++
T Consensus        58 sd~Dl~~a~~~~~   70 (84)
T PF00564_consen   58 SDEDLQEAIEQAK   70 (84)
T ss_dssp             SHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            5 45888887775

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein

Probab=97.22  E-value=0.0011  Score=51.93  Aligned_cols=68  Identities=25%  Similarity=0.302  Sum_probs=52.8

Q ss_pred             eEEEEecCccccceeecC---CccCHHHHHHHHHhhhcccccCCcCCCCCccccchhhhhhccCCCceeeEEEcCCCCeE
Q 026005          129 FVKVSMDGAPYLRKVDLK---LYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWM  205 (245)
Q Consensus       129 ~VKV~MdG~pigRKVDL~---~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwM  205 (245)
                      -|||..+|.-+=-++++.   ..-+|++|...+.+.|...                       ...+|+|.|.|.||||.
T Consensus         2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~-----------------------~~~~~~l~Y~Dedgd~V   58 (91)
T cd06398           2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLS-----------------------PDADLSLTYTDEDGDVV   58 (91)
T ss_pred             EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCC-----------------------CCCcEEEEEECCCCCEE
Confidence            489999998555555554   4679999999999999851                       23579999999999999


Q ss_pred             eccCCChhhhhhccee
Q 026005          206 LVGDVPWDMFVDSCKR  221 (245)
Q Consensus       206 LVGDvPW~mFv~svKR  221 (245)
                      .+-..  +.|...+.+
T Consensus        59 ~l~~D--~DL~~a~~~   72 (91)
T cd06398          59 TLVDD--NDLTDAIQY   72 (91)
T ss_pred             EEccH--HHHHHHHHH
Confidence            98766  666665554

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module

>smart00666 PB1 PB1 domain

Probab=97.18  E-value=0.0019  Score=47.79  Aligned_cols=65  Identities=20%  Similarity=0.415  Sum_probs=51.4

Q ss_pred             EEEEecCccccceeecCCccCHHHHHHHHHhhhcccccCCcCCCCCccccchhhhhhccCCCceeeEEEcCCCCeEeccC
Q 026005          130 VKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGD  209 (245)
Q Consensus       130 VKV~MdG~pigRKVDL~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwMLVGD  209 (245)
                      |||.-.|.  -|.+-+..--+|++|...+.+.|..                        ....+.|.|+|.||||..+.+
T Consensus         4 vK~~~~~~--~~~~~~~~~~s~~dL~~~i~~~~~~------------------------~~~~~~l~Y~Dedgd~v~l~s   57 (81)
T smart00666        4 VKLRYGGE--TRRLSVPRDISFEDLRSKVAKRFGL------------------------DNQSFTLKYQDEDGDLVSLTS   57 (81)
T ss_pred             EEEEECCE--EEEEEECCCCCHHHHHHHHHHHhCC------------------------CCCCeEEEEECCCCCEEEecC
Confidence            68877543  6777788888999999999999984                        123589999999999987765


Q ss_pred             -CChhhhhhcce
Q 026005          210 -VPWDMFVDSCK  220 (245)
Q Consensus       210 -vPW~mFv~svK  220 (245)
                       .=|.+.++.++
T Consensus        58 d~Dl~~a~~~~~   69 (81)
T smart00666       58 DEDLEEAIEEYD   69 (81)
T ss_pred             HHHHHHHHHHHH
Confidence             57777777665

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=97.04  E-value=0.0024  Score=49.11  Aligned_cols=56  Identities=23%  Similarity=0.338  Sum_probs=44.4

Q ss_pred             eEEEEecCccccceeecCCccCHHHHHHHHHhhhcccccCCcCCCCCccccchhhhhhccCCCceeeEEEcCCCCeEecc
Q 026005          129 FVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVG  208 (245)
Q Consensus       129 ~VKV~MdG~pigRKVDL~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwMLVG  208 (245)
                      =|||...|.  -+.+-|..--+|++|...+.++|..   .                    +.+.|.|-|.|.||||.++-
T Consensus         2 ~vK~~~~~d--~~r~~l~~~~~~~~L~~~i~~r~~~---~--------------------~~~~f~LkY~Ddegd~v~lt   56 (82)
T cd06407           2 RVKATYGEE--KIRFRLPPSWGFTELKQEIAKRFKL---D--------------------DMSAFDLKYLDDDEEWVLLT   56 (82)
T ss_pred             EEEEEeCCe--EEEEEcCCCCCHHHHHHHHHHHhCC---C--------------------CCCeeEEEEECCCCCeEEee
Confidence            389999887  4455556666999999999999985   0                    13579999999999999874


Q ss_pred             C
Q 026005          209 D  209 (245)
Q Consensus       209 D  209 (245)
                      -
T Consensus        57 s   57 (82)
T cd06407          57 C   57 (82)
T ss_pred             c
Confidence            3

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=96.99  E-value=0.0037  Score=45.88  Aligned_cols=66  Identities=20%  Similarity=0.367  Sum_probs=51.3

Q ss_pred             eEEEEecCccccceeecC-CccCHHHHHHHHHhhhcccccCCcCCCCCccccchhhhhhccCCCceeeEEEcCCCCeEec
Q 026005          129 FVKVSMDGAPYLRKVDLK-LYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLV  207 (245)
Q Consensus       129 ~VKV~MdG~pigRKVDL~-~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwMLV  207 (245)
                      -|||+-.|.  -|.+=+. ..-+|++|...|.+.|...                        ...+.+.|.|.||||..+
T Consensus         2 ~vK~~~~~~--~~~~~~~~~~~s~~~L~~~i~~~~~~~------------------------~~~~~l~y~D~e~d~v~l   55 (81)
T cd05992           2 RVKVKYGGE--IRRFVVVSRSISFEDLRSKIAEKFGLD------------------------AVSFKLKYPDEDGDLVTI   55 (81)
T ss_pred             cEEEEecCC--CEEEEEecCCCCHHHHHHHHHHHhCCC------------------------CCcEEEEeeCCCCCEEEe
Confidence            378888765  3444444 7889999999999999851                        135899999999999998


Q ss_pred             cC-CChhhhhhcce
Q 026005          208 GD-VPWDMFVDSCK  220 (245)
Q Consensus       208 GD-vPW~mFv~svK  220 (245)
                      .+ .=|++.++.++
T Consensus        56 ~sd~Dl~~a~~~~~   69 (81)
T cd05992          56 SSDEDLEEAIEEAR   69 (81)
T ss_pred             CCHHHHHHHHHHHh
Confidence            87 56777777665

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62

Probab=96.76  E-value=0.0044  Score=47.95  Aligned_cols=53  Identities=19%  Similarity=0.226  Sum_probs=46.2

Q ss_pred             EEEEecCccccceeecCCccCHHHHHHHHHhhhcccccCCcCCCCCccccchhhhhhccCCCceeeEEEcCCCCeEecc
Q 026005          130 VKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVG  208 (245)
Q Consensus       130 VKV~MdG~pigRKVDL~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwMLVG  208 (245)
                      |||...|.-+--+++-+..-+|++|...+.++|+.                        +  .|.|.|-|.||||.++-
T Consensus         3 vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l------------------------~--~f~lKYlDde~e~v~ls   55 (81)
T cd06396           3 LKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGL------------------------N--DIQIKYVDEENEEVSVN   55 (81)
T ss_pred             EEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCC------------------------C--cceeEEEcCCCCEEEEE
Confidence            79999998777788887788999999999999985                        1  47899999999998874

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.

>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK

Probab=96.22  E-value=0.021  Score=44.34  Aligned_cols=73  Identities=19%  Similarity=0.365  Sum_probs=49.2

Q ss_pred             EEEEecCccccceeecCCcc-CHHHHHHHHHhhhcccccCCcCCCCCccccchhhhhhccCCCceeeEEEcCCCCeEecc
Q 026005          130 VKVSMDGAPYLRKVDLKLYK-SYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVG  208 (245)
Q Consensus       130 VKV~MdG~pigRKVDL~~~~-sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwMLVG  208 (245)
                      +|+...|. | |.+=+..-. +|.+|...+.+.|...    .                 .....+.+.|.|.|||+.-+-
T Consensus         3 iK~~~g~D-i-R~~~~~~~~~t~~~L~~~v~~~F~~~----~-----------------~~~~~flIKYkD~dGDlVTIt   59 (81)
T cd06401           3 LKAQLGDD-I-RRIPIHNEDITYDELLLMMQRVFRGK----L-----------------GSSDDVLIKYKDEDGDLITIF   59 (81)
T ss_pred             EEEEeCCe-E-EEEeccCccccHHHHHHHHHHHhccc----c-----------------CCcccEEEEEECCCCCEEEec
Confidence            67666554 4 444444322 9999999999999841    1                 123479999999999999998


Q ss_pred             CC---ChhhhhhcceeeEEe
Q 026005          209 DV---PWDMFVDSCKRLRIM  225 (245)
Q Consensus       209 Dv---PW~mFv~svKRLrIm  225 (245)
                      +-   -|..-+...+||+|.
T Consensus        60 s~~dL~~A~~~~~~~~l~~~   79 (81)
T cd06401          60 DSSDLSFAIQCSRILKLTLF   79 (81)
T ss_pred             cHHHHHHHHhcCcceEEEEe
Confidence            74   444334445556553

The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.

>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=96.19  E-value=0.012  Score=45.46  Aligned_cols=72  Identities=21%  Similarity=0.294  Sum_probs=52.0

Q ss_pred             EEEEecCccccceeecCCccCHHHHHHHHHhhhcccccCCcCCCCCccccchhhhhhccCCCceeeEEEcCCCCeEecc-
Q 026005          130 VKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVG-  208 (245)
Q Consensus       130 VKV~MdG~pigRKVDL~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwMLVG-  208 (245)
                      ||...|..=-=-.+|.....+|+++++-|+.||..                        .+..|+|-|.|.+||.+-+- 
T Consensus         3 VKSkfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~l------------------------~~~~f~i~Y~D~~gDLLPInN   58 (80)
T cd06403           3 VKSKFDAEFRRFSLDRNKPGKFEDFYKLLEHLHHI------------------------PNVDFLIGYTDPHGDLLPINN   58 (80)
T ss_pred             eecccCCeEEEEEeccccCcCHHHHHHHHHHHhCC------------------------CCCcEEEEEeCCCCCEecccC
Confidence            56666665322245555669999999999999985                        23479999999999999775 


Q ss_pred             CCChhhhhhccee-eEEe
Q 026005          209 DVPWDMFVDSCKR-LRIM  225 (245)
Q Consensus       209 DvPW~mFv~svKR-LrIm  225 (245)
                      |+-+..=++++++ |||+
T Consensus        59 DdNf~kAlssa~plLRl~   76 (80)
T cd06403          59 DDNFLKALSSANPLLRIF   76 (80)
T ss_pred             cHHHHHHHHcCCCceEEE
Confidence            4555555667775 4553

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=95.62  E-value=0.027  Score=44.03  Aligned_cols=51  Identities=22%  Similarity=0.330  Sum_probs=38.3

Q ss_pred             ccccceeecC--CccCHHHHHHHHHhhhcccccCCcCCCCCccccchhhhhhccCCCceeeEEEcCCCCeEecc
Q 026005          137 APYLRKVDLK--LYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVG  208 (245)
Q Consensus       137 ~pigRKVDL~--~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwMLVG  208 (245)
                      .|-||.+=++  ...||.+|..++.+=|+.-.                     .-...|.|.|.|.||||.++-
T Consensus         7 ~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~---------------------~~~~~~~L~YlDDEgD~VllT   59 (86)
T cd06409           7 DPKGRVHRFRLRPSESLEELRTLISQRLGDDD---------------------FETHLYALSYVDDEGDIVLIT   59 (86)
T ss_pred             CCCCCEEEEEecCCCCHHHHHHHHHHHhCCcc---------------------ccCCcccEEEEcCCCCEEEEe
Confidence            4567765544  47899999999999997510                     012468999999999999875

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover

Probab=95.60  E-value=0.059  Score=42.21  Aligned_cols=59  Identities=24%  Similarity=0.460  Sum_probs=44.3

Q ss_pred             eEEEEecC---ccccceeec--CCccCHHHHHHHHHhhhcccccCCcCCCCCccccchhhhhhccCCCceeeEEEcCCCC
Q 026005          129 FVKVSMDG---APYLRKVDL--KLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGD  203 (245)
Q Consensus       129 ~VKV~MdG---~pigRKVDL--~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGD  203 (245)
                      .||.+..|   .+=-|++=|  ....+|++|...+.++|..                       +.+..|.+.|.|.|||
T Consensus         2 ~vkayl~~~~~~~EIRRf~l~~~~~~s~~~L~~~V~~~f~~-----------------------l~~~~ftlky~DeeGD   58 (87)
T cd06402           2 TVKAYLLGKDANAEIRRFAIDEDVSTSYEYLVEKVAAVFPS-----------------------LRGKNFQLFWKDEEGD   58 (87)
T ss_pred             eEEEeecCCCCccceEEEEecCCCCcCHHHHHHHHHHHccc-----------------------cCCCcEEEEEECCCCC
Confidence            57777766   333354444  6667999999999999974                       1245799999999999


Q ss_pred             eEeccCC
Q 026005          204 WMLVGDV  210 (245)
Q Consensus       204 wMLVGDv  210 (245)
                      ..-+...
T Consensus        59 lvtIssd   65 (87)
T cd06402          59 LVAFSSD   65 (87)
T ss_pred             EEeecCH
Confidence            9887653

The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=95.42  E-value=0.043  Score=42.80  Aligned_cols=55  Identities=22%  Similarity=0.349  Sum_probs=44.5

Q ss_pred             EEEEecCccccceeecCCccCHHHHHHHHHhhhcccccCCcCCCCCccccchhhhhhccCCCceeeEEEcCCCCeEeccC
Q 026005          130 VKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGD  209 (245)
Q Consensus       130 VKV~MdG~pigRKVDL~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwMLVGD  209 (245)
                      ||++..|.-.--.+|.  .-+|++|.+.+.+||...                       .+..|++.|.|.|||---+..
T Consensus         3 ~K~~y~gdi~it~~d~--~~s~e~L~~~v~~~c~~~-----------------------~~q~ft~kw~DEEGDp~tiSS   57 (83)
T cd06404           3 VKAAYNGDIMITSIDP--SISLEELCNEVRDMCRFH-----------------------NDQPFTLKWIDEEGDPCTISS   57 (83)
T ss_pred             EEEEecCcEEEEEcCC--CcCHHHHHHHHHHHhCCC-----------------------CCCcEEEEEECCCCCceeecC
Confidence            7899999865555665  778999999999999851                       245699999999999877664

PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,

>cd06397 PB1_UP1 Uncharacterized protein 1

Probab=94.51  E-value=0.13  Score=40.01  Aligned_cols=65  Identities=18%  Similarity=0.215  Sum_probs=48.8

Q ss_pred             EEEEecCccccceeecCCccCHHHHHHHHHhhhcccccCCcCCCCCccccchhhhhhccCCCceeeEEEcCCCCeEeccC
Q 026005          130 VKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGD  209 (245)
Q Consensus       130 VKV~MdG~pigRKVDL~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwMLVGD  209 (245)
                      -||+..|.  .|++-...-=+|..|.+.|+.+|....                       . .+.+||-|.|||..-+-|
T Consensus         3 fKv~~~g~--~RRf~~~~~pt~~~L~~kl~~Lf~lp~-----------------------~-~~~vtYiDeD~D~ITlss   56 (82)
T cd06397           3 FKSSFLGD--TRRIVFPDIPTWEALASKLENLYNLPE-----------------------I-KVGVTYIDNDNDEITLSS   56 (82)
T ss_pred             EEEEeCCc--eEEEecCCCccHHHHHHHHHHHhCCCh-----------------------h-HeEEEEEcCCCCEEEecc
Confidence            37777775  788888888899999999999999621                       1 279999999999886554


Q ss_pred             -CChhhhhhcce
Q 026005          210 -VPWDMFVDSCK  220 (245)
Q Consensus       210 -vPW~mFv~svK  220 (245)
                       .=-+.|..-..
T Consensus        57 d~eL~d~~~~~~   68 (82)
T cd06397          57 NKELQDFYRLSH   68 (82)
T ss_pred             hHHHHHHHHhcc
Confidence             44555554333

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.

>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA

Probab=92.07  E-value=0.55  Score=36.77  Aligned_cols=65  Identities=22%  Similarity=0.335  Sum_probs=49.6

Q ss_pred             ceEEEEecCccccceeecCCccCHHHHHHHHHhhhcccccCCcCCCCCccccchhhhhhccCCCceeeEEEcCCCCeEec
Q 026005          128 AFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLV  207 (245)
Q Consensus       128 ~~VKV~MdG~pigRKVDL~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwMLV  207 (245)
                      .-|||+-.|.  .|-|-+..--+|++|...+.++|+.                         ...+.+-|.|. ||..-+
T Consensus         3 ikVKv~~~~D--v~~i~v~~~i~f~dL~~kIrdkf~~-------------------------~~~~~iKykDE-GD~iti   54 (86)
T cd06408           3 IRVKVHAQDD--TRYIMIGPDTGFADFEDKIRDKFGF-------------------------KRRLKIKMKDD-GDMITM   54 (86)
T ss_pred             EEEEEEecCc--EEEEEcCCCCCHHHHHHHHHHHhCC-------------------------CCceEEEEEcC-CCCccc
Confidence            4589998888  5667777777899999999999985                         12589999999 999888


Q ss_pred             cCC-Chhhhhhcce
Q 026005          208 GDV-PWDMFVDSCK  220 (245)
Q Consensus       208 GDv-PW~mFv~svK  220 (245)
                      ++- =-++-+.++|
T Consensus        55 ~sq~DLd~Ai~~a~   68 (86)
T cd06408          55 GDQDDLDMAIDTAR   68 (86)
T ss_pred             cCHHHHHHHHHHHH
Confidence            873 3344444444

NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	245
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	96.24
1wmh_B	86	Partitioning defective-6 homolog alpha; kinase, PB	96.16
2kkc_A	102	Sequestosome-1; P62, PB1, autophagy, ubiquitin-pro	95.55
2ktr_A	117	Sequestosome-1; autophagy, NF-KB signaling, HOMO-o	94.57
1q1o_A	98	Cell division control protein 24; PB1 domain, PCCR	91.09
1pqs_A	77	Cell division control protein 24; alpha and beta p	80.58

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A

Probab=96.24  E-value=0.013  Score=44.86  Aligned_cols=59  Identities=20%  Similarity=0.193  Sum_probs=45.7

Q ss_pred             CcceEEEEecCccccceeecCCccCHHHHHHHHHhhhcccccCCcCCCCCccccchhhhhhccCCCceeeEEEcCCCCeE
Q 026005          126 NVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWM  205 (245)
Q Consensus       126 ~~~~VKV~MdG~pigRKVDL~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwM  205 (245)
                      +.+=|||+..|.-+  -+.+...-+|++|...|.++|...                       .+..+++.|.|.|||+.
T Consensus         5 ~~vkvK~~~~gdi~--~~~v~~~i~~~~L~~kv~~~~~~~-----------------------~~~~f~lky~DEeGD~i   59 (89)
T 1vd2_A            5 SQVRVKAYYRGDIM--ITHFEPSISFEGLCNEVRDMCSFD-----------------------NEQLFTMKWIDEEGDPC   59 (89)
T ss_dssp             SCEEEEEESSSCEE--EEEECTTCCHHHHHHHHHHHTTCC-----------------------SSCCEEEEECCSSSCCE
T ss_pred             CeEEEEEEeCCeEE--EEECCCCCCHHHHHHHHHHHhCCC-----------------------CCCeEEEEEECCCCCcc
Confidence            35788999999744  444445679999999999999841                       24468999999999997


Q ss_pred             eccC
Q 026005          206 LVGD  209 (245)
Q Consensus       206 LVGD  209 (245)
                      -+-.
T Consensus        60 tisS   63 (89)
T 1vd2_A           60 TVSS   63 (89)
T ss_dssp             ECCS
T ss_pred             cccC
Confidence            6643

>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2

Probab=96.16  E-value=0.012  Score=44.90  Aligned_cols=71  Identities=20%  Similarity=0.190  Sum_probs=53.8

Q ss_pred             CcceEEEEecCccccceeecCCccCHHHHHHHHHhhhcccccCCcCCCCCccccchhhhhhccCCCceeeEEEcCCCCeE
Q 026005          126 NVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWM  205 (245)
Q Consensus       126 ~~~~VKV~MdG~pigRKVDL~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwM  205 (245)
                      +..-||...|..--=-.||-....+|++|..-|+++|..                        ....|++.|.|.|||++
T Consensus         5 ~~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L------------------------~~~~f~i~Y~D~dGDLl   60 (86)
T 1wmh_B            5 SIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQI------------------------PGLDVLLGYTDAHGDLL   60 (86)
T ss_dssp             CEEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTC------------------------TTCCCEEEEECTTSCEE
T ss_pred             CEEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCC------------------------CCCCEEEEEECCCCCEe
Confidence            457789999888433455656778999999999999984                        13468999999999999


Q ss_pred             eccCC-Chhhhhhcce
Q 026005          206 LVGDV-PWDMFVDSCK  220 (245)
Q Consensus       206 LVGDv-PW~mFv~svK  220 (245)
                      -+=+. -..+=+.++|
T Consensus        61 pInnDdnl~~Al~~a~   76 (86)
T 1wmh_B           61 PLTNDDSLHRALASGP   76 (86)
T ss_dssp             ECCSHHHHHHHTTSSS
T ss_pred             eecCHHHHHHHHHhCC
Confidence            88764 3444455666

>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B

Probab=95.55  E-value=0.023  Score=44.45  Aligned_cols=62  Identities=15%  Similarity=0.248  Sum_probs=46.4

Q ss_pred             CcceEEEEecCc----cccceeecCC-----------ccCHHHHHHHHHhhhcccccCCcCCCCCccccchhhhhhccCC
Q 026005          126 NVAFVKVSMDGA----PYLRKVDLKL-----------YKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNG  190 (245)
Q Consensus       126 ~~~~VKV~MdG~----pigRKVDL~~-----------~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~  190 (245)
                      .++-||++..|.    .=-|++-|..           ..+|++|...++++|...                       .+
T Consensus         4 m~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l-----------------------~~   60 (102)
T 2kkc_A            4 MSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPAL-----------------------RP   60 (102)
T ss_dssp             CEEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTS-----------------------CS
T ss_pred             ceEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHcccc-----------------------CC
Confidence            367889998762    2346555532           248999999999999741                       24


Q ss_pred             CceeeEEEcCCCCeEeccCC
Q 026005          191 SDYVPTYEDKDGDWMLVGDV  210 (245)
Q Consensus       191 sey~ltYeDkeGDwMLVGDv  210 (245)
                      ..|.+.|.|.|||+.-+-+.
T Consensus        61 ~~f~l~Y~DedGDlItiSsD   80 (102)
T 2kkc_A           61 GGFQAHYRAERGDLVAFSSD   80 (102)
T ss_dssp             SCEEEEEECTTCCEEEECSH
T ss_pred             CcEEEEEECCCCCEEEecCH
Confidence            57999999999999887764

>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}

Probab=94.57  E-value=0.067  Score=42.89  Aligned_cols=62  Identities=15%  Similarity=0.220  Sum_probs=45.8

Q ss_pred             CcceEEEEecCc----cccceeecC-----------CccCHHHHHHHHHhhhcccccCCcCCCCCccccchhhhhhccCC
Q 026005          126 NVAFVKVSMDGA----PYLRKVDLK-----------LYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNG  190 (245)
Q Consensus       126 ~~~~VKV~MdG~----pigRKVDL~-----------~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~  190 (245)
                      .++-||++..|.    .==|++-|.           .-.+|++|...++++|...                       .+
T Consensus        19 ~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L-----------------------~~   75 (117)
T 2ktr_A           19 GSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPAL-----------------------RP   75 (117)
T ss_dssp             -CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTS-----------------------CS
T ss_pred             ccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHcccc-----------------------CC
Confidence            368899999752    223555554           1359999999999999741                       24


Q ss_pred             CceeeEEEcCCCCeEeccCC
Q 026005          191 SDYVPTYEDKDGDWMLVGDV  210 (245)
Q Consensus       191 sey~ltYeDkeGDwMLVGDv  210 (245)
                      ..|.+.|.|.|||+.-+-..
T Consensus        76 ~~f~l~YkDEdGDlItISsD   95 (117)
T 2ktr_A           76 GGFQAHYRAERGDLVAFSSD   95 (117)
T ss_dssp             SCEEEEEECTTCCEEEECSH
T ss_pred             CcEEEEEECCCCCEEEecCH
Confidence            57999999999999877654

>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B

Probab=91.09  E-value=0.55  Score=36.48  Aligned_cols=75  Identities=15%  Similarity=0.324  Sum_probs=54.5

Q ss_pred             cceEEEEecCcc----c--cceeecCCccCHHHHHHHHHhhhcccccCCcCCCCCccccchhhhhhccCCCceeeEEEcC
Q 026005          127 VAFVKVSMDGAP----Y--LRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDK  200 (245)
Q Consensus       127 ~~~VKV~MdG~p----i--gRKVDL~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDk  200 (245)
                      +.-|||+-+...    +  .+.|=+..--+|++|...+.+-|...+ +    +            + . .....+-|+|.
T Consensus         5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~-~----~------------~-i-~~~~klkYkDE   65 (98)
T 1q1o_A            5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTH-N----N------------N-I-SPITKIKYQDE   65 (98)
T ss_dssp             CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHC-S----S------------C-C-CCCCCEEEECS
T ss_pred             cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCc-c----c------------c-c-cceeEEEEEcC
Confidence            467888877421    2  366667788899999999999998531 0    0            0 0 12468999999


Q ss_pred             CCCeEeccC-CChhhhhhcce
Q 026005          201 DGDWMLVGD-VPWDMFVDSCK  220 (245)
Q Consensus       201 eGDwMLVGD-vPW~mFv~svK  220 (245)
                      |||+...++ .=|+|-+++++
T Consensus        66 dGD~Vtl~sddDl~~A~e~~~   86 (98)
T 1q1o_A           66 DGDFVVLGSDEDWNVAKEMLA   86 (98)
T ss_dssp             SSCEEEECSHHHHHHHHHHHH
T ss_pred             CCCEEEEcCHHHHHHHHHHHH
Confidence            999988876 58999888764

>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A

Probab=80.58  E-value=1.3  Score=32.82  Aligned_cols=57  Identities=18%  Similarity=0.341  Sum_probs=41.7

Q ss_pred             cCCccCHHHHHHHHHhhhcccccCCcCCCCCccccchhhhhhccCCCceeeEEEcCCCCeEeccC-CChhhhhhcce
Q 026005          145 LKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGD-VPWDMFVDSCK  220 (245)
Q Consensus       145 L~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwMLVGD-vPW~mFv~svK  220 (245)
                      ...--+|++|...+.+-|..+     .+.+              ......+-|+|.|||+...++ .=|+|-++++|
T Consensus         8 V~~~i~f~~L~~kI~~kl~~~-----~~~~--------------~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~~   65 (77)
T 1pqs_A            8 VEKVWNFDDLIMAINSKISNT-----HNNN--------------ISPITKIKYQDEDGDFVVLGSDEDWNVAKEMLA   65 (77)
T ss_dssp             CTTCCCSHHHHHHHHHHTTTT-----TSSC--------------SCSTTCCEEEETTTEEEECCSTTHHHHHHHHHH
T ss_pred             eCCCCCHHHHHHHHHHHHccc-----cccc--------------ccceeEEEEEcCCCCEEEEcCHHHHHHHHHHHH
Confidence            445568999999999999852     1111              013568999999999987765 68999988774

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	245
d2bkfa1	85	Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum	96.84
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	95.73
d1wmhb_	82	Partitioning defective-6 homolog alpha, PAR-6 alph	90.17

>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Next to BRCA1 gene 1 protein, NBR1 (KIAA0049)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.0011  Score=48.89  Aligned_cols=64  Identities=9%  Similarity=0.109  Sum_probs=50.4

Q ss_pred             ceEEEEecCccccceeecCCccCHHHHHHHHHhhhcccccCCcCCCCCccccchhhhhhccCCCceeeEEEcCCCCeEec
Q 026005          128 AFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLV  207 (245)
Q Consensus       128 ~~VKV~MdG~pigRKVDL~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwMLV  207 (245)
                      .=|||+..|..+=-+|-+....+|.+|...|...|+.                        .  ++.|.|.|.|+||.++
T Consensus         5 vtvKvtf~~dt~RF~ls~~~~~~~~~L~~~i~~rf~l------------------------~--~~~lkY~Ddd~e~v~l   58 (85)
T d2bkfa1           5 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDL------------------------N--TIQIKYLDEENEEVSI   58 (85)
T ss_dssp             EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTC------------------------S--SEEEEEECTTSCEEEE
T ss_pred             EEEEEEECCceEEEEecCCCCCcHHHHHHHHHHhcCc------------------------c--cceEEEEcCCCCEEEE
Confidence            4689999998766678777889999999999999984                        1  3689999999999987


Q ss_pred             cC-CChhhhhh
Q 026005          208 GD-VPWDMFVD  217 (245)
Q Consensus       208 GD-vPW~mFv~  217 (245)
                      .- .=.++.+.
T Consensus        59 ~~d~dl~E~~~   69 (85)
T d2bkfa1          59 NSQGEYEEALK   69 (85)
T ss_dssp             CSHHHHHHHHH
T ss_pred             ecHHHHHHHHH
Confidence            63 33444443

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.73  E-value=0.01  Score=42.75  Aligned_cols=73  Identities=11%  Similarity=0.130  Sum_probs=53.0

Q ss_pred             CCCcceEEEEecCccccceeecCCccCHHHHHHHHHhhhcccccCCcCCCCCccccchhhhhhccCCCceeeEEEcCCCC
Q 026005          124 SSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGD  203 (245)
Q Consensus       124 ~~~~~~VKV~MdG~pigRKVDL~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGD  203 (245)
                      +.+..-|||+..+.-+-  +=|..--+|.+|...+.+.|..   +                       .|+|-|.|.|||
T Consensus         9 ~~~~ikVKv~~~~D~~~--~~l~~~it~~dL~~kI~~rf~~---~-----------------------~~~lkY~Dedgd   60 (85)
T d1ip9a_           9 GLKTTKIKFYYKDDIFA--LMLKGDTTYKELRSKIAPRIDT---D-----------------------NFKLQTKLFDGS   60 (85)
T ss_dssp             CCCCEEEEECBTTCCEE--EEECSCCCHHHHHHHHHHHHTS---S-----------------------CEEEEECCSSSC
T ss_pred             CCCCEEEEEEECCcEEE--EEeCCCCCHHHHHHHHHHHhCC---C-----------------------ceEEEEEcCCCC
Confidence            34568899999988444  4445567899999999999963   1                       379999999999


Q ss_pred             eEeccC-CChhhhhhcceeeEE
Q 026005          204 WMLVGD-VPWDMFVDSCKRLRI  224 (245)
Q Consensus       204 wMLVGD-vPW~mFv~svKRLrI  224 (245)
                      |..+-+ .=+++-++...||.+
T Consensus        61 ~v~i~sD~Dl~~ai~~~~kl~v   82 (85)
T d1ip9a_          61 GEEIKTDSQVSNIIQAKLKISV   82 (85)
T ss_dssp             CSCCCSHHHHHHHHHTTCCEEE
T ss_pred             EEEEeCHHHHHHHHHhcCcEEE
Confidence            986654 455555555555443

>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha, PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Partitioning defective-6 homolog alpha, PAR-6 alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.17  E-value=0.35  Score=34.79  Aligned_cols=71  Identities=23%  Similarity=0.238  Sum_probs=49.4

Q ss_pred             EEEEecCccccceeecCCccCHHHHHHHHHhhhcccccCCcCCCCCccccchhhhhhccCCCceeeEEEcCCCCeEeccC
Q 026005          130 VKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGD  209 (245)
Q Consensus       130 VKV~MdG~pigRKVDL~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwMLVGD  209 (245)
                      ||=..|-+=-=-.+|....++|++.+.-|+.|-..                        .+.+|++.|.|.+||.+-+-.
T Consensus         5 VKSKFdAEfRRFsl~r~~~~~fe~F~~Lle~~H~l------------------------~~~~f~i~Y~D~hgDLLPINN   60 (82)
T d1wmhb_           5 VKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQI------------------------PGLDVLLGYTDAHGDLLPLTN   60 (82)
T ss_dssp             EEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTC------------------------TTCCCEEEEECTTSCEEECCS
T ss_pred             eecccCceEEEeeeccccccCHHHHHHHHHHHcCC------------------------CCCcEEEEEecCCCCcccccC
Confidence            44444444222357778889999999999999875                        245789999999999998764


Q ss_pred             C-Chhhhhhccee-eEE
Q 026005          210 V-PWDMFVDSCKR-LRI  224 (245)
Q Consensus       210 v-PW~mFv~svKR-LrI  224 (245)
                      . -+.-=+.+++- |||
T Consensus        61 DdNf~kA~~sa~PlLRi   77 (82)
T d1wmhb_          61 DDSLHRALASGPPPLRL   77 (82)
T ss_dssp             HHHHHHHTTSSSSCEEE
T ss_pred             chHHHHHHHhcCCceeE
Confidence            3 44444566663 444