Citrus Sinensis ID: 026023

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240----
Protein Sequence
MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC
Secondary Structure (PSIPRED)
ccccccccccccccccEEEEEccccHHHHHHHHHHcccEEEEEccccccccHHHHHHHHcccccEEEEcccccccHHHHHHcccccccEEEEEccccccccHHHHHHcccEEEcccccccHHHHHHHHHHHHHHcccHHHHHHHHHccccccccccccccccccccEEEEEcccHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHHHHHccccccccccccEEccHHHHHHHccEEEEcc
Secondary Structure Prediction (SSPRO)
cccccEEEEEccccccEEEEEccccHHHHHHHHHHcccEEEEEccccccccHHHHHHHHHccccEEEEEccccccHHHHHHcccccccEEEEEccccccEcHHHHHHcccEEEccccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccccEccccccEEEEEcccHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHcccHHHcccccccHccccEEccHHHHHHHccEEEEEc
Coil and Loop (DISEMBL)
makpvsievwnpngkyrvvstkpmpgtrWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAvgynnvdvnaankygiavgntpgvlTETTAELAASLSLAAARRIVEADEFMraglydgwlpnlfvgnllkgqtvgvigagrIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLkangeqpvtwkrASSMDEVLREADVVCTLC
Flexible Loop (DISEMBL)
makpvsievwnpngkyrvvstkpmpGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFlkangeqpvtwkRASSMDEVLREADVVCTLC
Low Complexity Region (SEG)
MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVltettaelaaslslaaaRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC
Disordered region (IsUnstruct)
******IEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA****EVLREADVVC***
Disordered Region (DISOPRED)
*****************VVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC
Disordered Region (DISEMBL)
MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC
Disordered Region (DISPRO)
**KPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	244	2.2.26 [Sep-21-2011]
P13443	382	Glycerate dehydrogenase O	N/A	no	0.987	0.630	0.941	1e-126
Q9C9W5	386	Glycerate dehydrogenase H	yes	no	0.987	0.624	0.921	1e-123
Q5JEZ2	333	Glyoxylate reductase OS=P	yes	no	0.770	0.564	0.347	2e-25
B6YWH0	334	Glyoxylate reductase OS=T	yes	no	0.848	0.619	0.341	1e-24
Q9YAW4	335	Glyoxylate reductase OS=A	yes	no	0.561	0.408	0.405	2e-24
B1L765	332	Glyoxylate reductase OS=K	yes	no	0.737	0.542	0.403	3e-24
Q8U3Y2	336	Glyoxylate reductase OS=P	yes	no	0.692	0.502	0.352	1e-23
A1RYE4	339	Glyoxylate reductase OS=T	yes	no	0.713	0.513	0.372	1e-22
Q9C4M5	331	Glyoxylate reductase OS=T	N/A	no	0.602	0.444	0.418	9e-21
O32264	325	Probable 2-ketogluconate	yes	no	0.737	0.553	0.338	9e-19

>sp|P13443|DHGY_CUCSA Glycerate dehydrogenase OS=Cucumis sativus GN=HPR-A PE=2 SV=1

 Score =  452 bits (1162), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 227/241 (94%), Positives = 236/241 (97%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPV IEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICT+KKTILSVEDI+ALIG
Sbjct: 1   MAKPVQIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTEKKTILSVEDILALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGE LF+ALSRAGGKAFSNMAVGYNNVDVNAANKYG+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGEVLFSALSRAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEADEFMRAG YDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRAGRYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240
           ARMMVEGFKMNLIY+DLYQ+TRLEKFVTAYG+FLKANGE PVTW+RASSMDEVLREADV+
Sbjct: 181 ARMMVEGFKMNLIYFDLYQSTRLEKFVTAYGEFLKANGEAPVTWRRASSMDEVLREADVI 240

Query: 241 C 241
            
Sbjct: 241 S 241

Cucumis sativus (taxid: 3659)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 9

>sp|Q9C9W5|HPR1_ARATH Glycerate dehydrogenase HPR, peroxisomal OS=Arabidopsis thaliana GN=HPR PE=1 SV=1

 Score =  440 bits (1132), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 222/241 (92%), Positives = 234/241 (97%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPVSIEV+NPNGKYRVVSTKPMPGTRWINLL++Q CRVEIC  KKTILSVEDII LIG
Sbjct: 1   MAKPVSIEVYNPNGKYRVVSTKPMPGTRWINLLVDQGCRVEICHLKKTILSVEDIIDLIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLF+ALS+AGGKAFSNMAVGYNNVDV AANKYGIAVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFSALSKAGGKAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEADEFMR GLY+GWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRGGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240
           ARMMVEGFKMNLIY+DLYQ+TRLEKFVTAYGQFLKANGEQPVTWKRASSM+EVLREAD++
Sbjct: 181 ARMMVEGFKMNLIYFDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADLI 240

Query: 241 C 241
            
Sbjct: 241 S 241

Catalyzes the NADH-dependent reduction of hydroxypyruvate into glycerate in the photorespiratory core cycle. Mediates fatty acid beta-oxidation in germinating seeds when malate dehydrogenase is absent.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q5JEZ2|GYAR_PYRKO Glyoxylate reductase OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=gyaR PE=3 SV=1

 Score =  115 bits (288), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/213 (34%), Positives = 117/213 (54%), Gaps = 25/213 (11%)

Query: 33  LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN 92
           ++++   VE+  +++ I   E ++  + D  D ++  L+E     +F A  R   +  +N
Sbjct: 18  MLKEHFEVEVWPEEREI-PREVLLKKVRD-VDALVTMLSERIDSEVFDAAPRL--RIVAN 73

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD- 151
            AVGY+N+DV  A + GI V NTP VLT+ TA+ A +L LA ARR++EAD F R+G +  
Sbjct: 74  YAVGYDNIDVEEATRRGIYVTNTPDVLTDATADFAWTLLLATARRLIEADHFTRSGEWKR 133

Query: 152 ---GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
               W P  F+G  + G+T+G++G GRIG A AR    GF M ++YY   +    EK + 
Sbjct: 134 RGIAWHPRWFLGYDVYGKTIGIVGFGRIGQAVAR-RARGFGMRILYYSRSRKPEAEKELG 192

Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVVC 241
           A  +F               S++++LRE+D V 
Sbjct: 193 A--EF--------------RSLEDLLRESDFVV 209

Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (taxid: 69014)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|B6YWH0|GYAR_THEON Glyoxylate reductase OS=Thermococcus onnurineus (strain NA1) GN=gyaR PE=3 SV=1

 Score =  113 bits (282), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/234 (34%), Positives = 128/234 (54%), Gaps = 27/234 (11%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           K +V+ T+ +P    I +L E    VE+   +  I S E ++  + D  D ++  L+E  
Sbjct: 2   KPKVLITRKIPEN-GIKMLREH-FEVEVWEDEHEI-SREVLLEKVRD-VDALVTMLSERI 57

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              +F A  R   K  +N AVGY+N+D+  A K G+ + NTP VLT  TA++A  L LA 
Sbjct: 58  DAEVFDAAPRL--KIVANYAVGYDNIDIEEATKMGVYITNTPDVLTNATADMAWVLLLAT 115

Query: 135 ARRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM 190
           ARR++EAD+F+R+G +      W P +F+G  + G+T+G++G GRIG A AR   +GF M
Sbjct: 116 ARRLIEADKFVRSGEWKKRGVAWHPLMFLGYDVYGRTIGIVGFGRIGQAIAR-RAKGFGM 174

Query: 191 NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244
            ++Y    +   +EK + A  +F+               +DE+L+E+D V  + 
Sbjct: 175 RILYNSRTRKPEVEKELGA--EFM--------------PLDELLKESDFVVLVV 212

Thermococcus onnurineus (strain NA1) (taxid: 523850)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9YAW4|GYAR_AERPE Glyoxylate reductase OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=gyaR PE=3 SV=2

 Score =  112 bits (280), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/158 (40%), Positives = 94/158 (59%), Gaps = 21/158 (13%)

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRA 147
           +  + MAVG++N+DV  A + GI V NTPGVLTE TAE   +L LAAARR+VEAD F+R 
Sbjct: 70  RIVAQMAVGFDNIDVECATRLGIYVTNTPGVLTEATAEFTWALILAAARRVVEADHFVRW 129

Query: 148 G----LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL 203
           G    L  GW P + +G  L+G+T+G++G GRIGS  A +  + F M +IY+   +   +
Sbjct: 130 GEWWRLRTGWHPMMMLGVELRGKTLGILGMGRIGSRVAEIG-KAFGMRIIYHSRSRKREI 188

Query: 204 EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC 241
           EK + A                   S++++LRE+D++ 
Sbjct: 189 EKELGA----------------EYRSLEDLLRESDILS 210

Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) (taxid: 272557)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|B1L765|GYAR_KORCO Glyoxylate reductase OS=Korarchaeum cryptofilum (strain OPF8) GN=gyaR PE=3 SV=1

 Score =  112 bits (279), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/196 (40%), Positives = 112/196 (57%), Gaps = 16/196 (8%)

Query: 15  KYRVVSTKPMP--GTRWINLLIEQDC-RVEICTQKKTILS-VEDIIALIGDKCDGVIGQL 70
           K RV  T+ +P  G   I    E D  + E    KK I+  V+D        CD ++  L
Sbjct: 2   KPRVFVTREIPERGLSKIEEHFELDLWKDEAPPSKKVIIERVKD--------CDALVSLL 53

Query: 71  TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASL 130
           T+     +F A  +   +  +  AVGY+N+DV  A K GI V NTPGVLTETTA+ A +L
Sbjct: 54  TDPIDAEVFEAAPKL--RIVAQYAVGYDNIDVKEATKRGIYVTNTPGVLTETTADFAFAL 111

Query: 131 SLAAARRIVEADEFMRAGLYD-GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFK 189
            +AAARR+VEAD ++R G +   W P + +G  + G+T+G++G GRIG+A AR   +GF 
Sbjct: 112 LMAAARRVVEADRYVREGKWKVAWHPMMMLGYDVYGRTLGIVGMGRIGAAVAR-RAKGFG 170

Query: 190 MNLIYYDLYQATRLEK 205
           M ++YYD  +    EK
Sbjct: 171 MRILYYDSIRREDFEK 186

Korarchaeum cryptofilum (strain OPF8) (taxid: 374847)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q8U3Y2|GYAR_PYRFU Glyoxylate reductase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=gyaR PE=3 SV=1

 Score =  109 bits (273), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/193 (35%), Positives = 105/193 (54%), Gaps = 24/193 (12%)

Query: 53  EDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAV 112
           E ++  + D  D ++  L+E   + +F    R   +  +N AVGY+N+DV  A + GI V
Sbjct: 37  EKLLEKVKD-VDALVTMLSERIDQEVFENAPRL--RIVANYAVGYDNIDVEEATRRGIYV 93

Query: 113 GNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTV 168
            NTP VLT  TA+ A +L LA AR +V+ D+F+R+G +      W P  F+G  L G+T+
Sbjct: 94  TNTPDVLTNATADHAFALLLATARHVVKGDKFVRSGEWKRKGIAWHPKWFLGYELYGKTI 153

Query: 169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS 228
           G++G GRIG A AR   +GF M ++YY   + ++ EK + A                   
Sbjct: 154 GIVGFGRIGQAIAR-RAKGFNMRILYYSRTRKSQAEKELGA----------------EYR 196

Query: 229 SMDEVLREADVVC 241
            ++EVL+E+D V 
Sbjct: 197 PLEEVLKESDFVI 209

Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|A1RYE4|GYAR_THEPD Glyoxylate reductase OS=Thermofilum pendens (strain Hrk 5) GN=gyaR PE=3 SV=1

 Score =  107 bits (266), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/185 (37%), Positives = 102/185 (55%), Gaps = 11/185 (5%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           K  V    P PG      ++++ C V +   K    S E+++  I DK D ++  LT+  
Sbjct: 5   KVYVTRIIPEPGLS----MLKECCDVVVHESKDWPPSREELLRNIRDK-DALLCLLTDKI 59

Query: 75  -GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLA 133
             E + AA      K  S  +VG++++D+  A K GI V +TPGVLT+  AE    L LA
Sbjct: 60  DAEVMDAA---PNLKVISTYSVGFDHIDIPEATKRGIYVTHTPGVLTDAVAEFTVGLILA 116

Query: 134 AARRIVEADEFMRAGLYD-GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNL 192
             RRIVEAD+ +R G +D  W P    G  LKG+T+G++G GRIG A A+ +   F + +
Sbjct: 117 VTRRIVEADKIIRTGQWDKPWNPYFLTGPELKGKTIGLVGLGRIGVATAKRL-SSFDVKI 175

Query: 193 IYYDL 197
           +YYD+
Sbjct: 176 LYYDI 180

Thermofilum pendens (strain Hrk 5) (taxid: 368408)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9C4M5|GYAR_THELI Glyoxylate reductase OS=Thermococcus litoralis GN=gyaR PE=1 SV=1

 Score =  100 bits (249), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 69/165 (41%), Positives = 99/165 (60%), Gaps = 18/165 (10%)

Query: 49  ILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKY 108
           +  V+ ++ L+ DK D    +L E+  +           K  +  AVGY+N+D+  A K 
Sbjct: 43  VREVDALVTLVTDKVDK---ELLENAPKL----------KIIAQYAVGYDNIDIEEATKR 89

Query: 109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD----GWLPNLFVGNLLK 164
           GI V NTPGVLT+ TA+LA +L LA ARRIVEAD F+R+G +     GW P +F+G  LK
Sbjct: 90  GIYVTNTPGVLTDATADLAFALLLAVARRIVEADAFVRSGEWKKSEVGWHPLMFLGYGLK 149

Query: 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA 209
           G+T+G++G GRIG A A+   +GF M +IYY   +    E+ + A
Sbjct: 150 GKTLGIVGFGRIGQALAK-RAKGFGMKIIYYSRTRKPEAEEEIGA 193

Thermococcus litoralis (taxid: 2265)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|O32264|TKRA_BACSU Probable 2-ketogluconate reductase OS=Bacillus subtilis (strain 168) GN=yvcT PE=3 SV=1

 Score = 94.0 bits (232), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 64/189 (33%), Positives = 99/189 (52%), Gaps = 9/189 (4%)

Query: 18  VVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGET 77
           V  TKP+P    I   I + CR E+  Q+ T+ S  D++     + +G++   T   G +
Sbjct: 6   VFITKPIP--EEIEAFIGEHCRYEVW-QEDTLPS--DVLFEKLKEAEGLLTSGTS--GPS 58

Query: 78  LFAALSRAGGK--AFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAA 135
           +   L     K    SN +VGY+N D+ A  + G+   +TP  L +T A+LA SL L++A
Sbjct: 59  INRELLEHAPKLKVVSNQSVGYDNFDIEAMKERGVVGTHTPYTLDDTVADLAFSLILSSA 118

Query: 136 RRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 195
           RR+ E D F+RAG +         G  +  QT+G+IG GRIG   AR    GF M ++Y+
Sbjct: 119 RRVAELDRFVRAGKWGTVEEEALFGIDVHHQTLGIIGMGRIGEQAARRAKFGFDMEVLYH 178

Query: 196 DLYQATRLE 204
           + ++    E
Sbjct: 179 NRHRKQETE 187

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
225428049	386	PREDICTED: glycerate dehydrogenase [Viti	0.983	0.621	0.941	1e-126
147805559	386	hypothetical protein VITISV_020147 [Viti	0.983	0.621	0.941	1e-126
13873334	386	hydroxypyruvate reductase [Bruguiera gym	0.983	0.621	0.95	1e-126
118489484	386	unknown [Populus trichocarpa x Populus d	0.987	0.624	0.950	1e-126
255581842	386	hydroxypyruvate reductase, putative [Ric	0.987	0.624	0.958	1e-126
224078341	386	predicted protein [Populus trichocarpa]	0.987	0.624	0.946	1e-125
449454213	382	PREDICTED: glycerate dehydrogenase-like	0.987	0.630	0.941	1e-125
388493492	388	unknown [Lotus japonicus]	0.987	0.621	0.925	1e-123
1304042	386	hydroxypyruvate reductase [Cucurbita cv.	0.983	0.621	0.933	1e-122
1304044	381	hydroxypyruvate reductase [Cucurbita cv.	0.983	0.629	0.933	1e-122

>gi|225428049|ref|XP_002279281.1| PREDICTED: glycerate dehydrogenase [Vitis vinifera] gi|297744600|emb|CBI37862.3| unnamed protein product [Vitis vinifera]

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 226/240 (94%), Positives = 239/240 (99%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPVSIEVWNP GKYRVVSTKPMPGTRWI+LL++QDCRVEICTQKKTILSVEDIIALIG
Sbjct: 1   MAKPVSIEVWNPCGKYRVVSTKPMPGTRWIDLLVQQDCRVEICTQKKTILSVEDIIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLF+ALSRAGG+AFSNMAVGYNNVDVNAANKYG+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFSALSRAGGRAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLS+AAARRIVEADEFMRAGLYDGWLP+LFVGNLL+GQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSMAAARRIVEADEFMRAGLYDGWLPHLFVGNLLRGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240
           ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA+GEQPVTWKRA+SMDEVLREAD++
Sbjct: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKASGEQPVTWKRAASMDEVLREADLI 240

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147805559|emb|CAN65023.1| hypothetical protein VITISV_020147 [Vitis vinifera]

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 226/240 (94%), Positives = 239/240 (99%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPVSIEVWNP GKYRVVSTKPMPGTRWI+LL++QDCRVEICTQKKTILSVEDIIALIG
Sbjct: 1   MAKPVSIEVWNPCGKYRVVSTKPMPGTRWIDLLVQQDCRVEICTQKKTILSVEDIIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLF+ALSRAGG+AFSNMAVGYNNVDVNAANKYG+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFSALSRAGGRAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLS+AAARRIVEADEFMRAGLYDGWLP+LFVGNLL+GQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSMAAARRIVEADEFMRAGLYDGWLPHLFVGNLLRGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240
           ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA+GEQPVTWKRA+SMDEVLREAD++
Sbjct: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKASGEQPVTWKRAASMDEVLREADLI 240

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13873334|dbj|BAB44155.1| hydroxypyruvate reductase [Bruguiera gymnorhiza]

 Score =  456 bits (1172), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 228/240 (95%), Positives = 239/240 (99%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPVSIEVWNP G+YRVVSTKPMPGTRWINLL++QDCR+EICT+KKTILSVEDIIAL+G
Sbjct: 1   MAKPVSIEVWNPRGRYRVVSTKPMPGTRWINLLVQQDCRLEICTEKKTILSVEDIIALMG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLFAALS+AGGKAFSNMAVGYNNVDVNAANKYG+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFAALSKAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240
           ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA++MDEVLREADV+
Sbjct: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAATMDEVLREADVI 240

Source: Bruguiera gymnorhiza

Species: Bruguiera gymnorhiza

Genus: Bruguiera

Family: Rhizophoraceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489484|gb|ABK96544.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  455 bits (1171), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 229/241 (95%), Positives = 239/241 (99%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKP+SIEV+NPNGKYRVVSTK MPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG
Sbjct: 1   MAKPISIEVYNPNGKYRVVSTKSMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANK+G+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKHGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEAD+FMRAGLYDGWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADQFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240
           ARMMVEGFKMNLIYYDLYQ+TRLEKFVTAYG+FLKANGEQPVTWKRA+SMDEVLREADV+
Sbjct: 181 ARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGEFLKANGEQPVTWKRAASMDEVLREADVI 240

Query: 241 C 241
            
Sbjct: 241 S 241

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581842|ref|XP_002531721.1| hydroxypyruvate reductase, putative [Ricinus communis] gi|223528624|gb|EEF30641.1| hydroxypyruvate reductase, putative [Ricinus communis]

 Score =  455 bits (1170), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 231/241 (95%), Positives = 236/241 (97%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPV IEVWNPNGKYRVVSTK MPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG
Sbjct: 1   MAKPVQIEVWNPNGKYRVVSTKSMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYG+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240
           ARMMVEGFKMNLIY+DLYQATRLEKFVTAYG FL+ANGEQPVTWKRASSMDEVLR ADV+
Sbjct: 181 ARMMVEGFKMNLIYFDLYQATRLEKFVTAYGAFLQANGEQPVTWKRASSMDEVLRVADVI 240

Query: 241 C 241
            
Sbjct: 241 S 241

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078341|ref|XP_002305524.1| predicted protein [Populus trichocarpa] gi|222848488|gb|EEE86035.1| predicted protein [Populus trichocarpa]

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 228/241 (94%), Positives = 239/241 (99%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKP+SIEV+NPNGKYRVVSTK MPGTRWINLLIEQDCRVEICTQ+KTILSVEDIIALIG
Sbjct: 1   MAKPISIEVYNPNGKYRVVSTKSMPGTRWINLLIEQDCRVEICTQQKTILSVEDIIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANK+G+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKHGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEAD+FMRAGLYDGWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADQFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240
           ARMMVEGFKMNLIYYDLYQ+TRLEKFVTAYG+FLKANGEQPVTWKRA+SMDEVLREADV+
Sbjct: 181 ARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGEFLKANGEQPVTWKRAASMDEVLREADVI 240

Query: 241 C 241
            
Sbjct: 241 S 241

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454213|ref|XP_004144850.1| PREDICTED: glycerate dehydrogenase-like [Cucumis sativus] gi|449508825|ref|XP_004163421.1| PREDICTED: glycerate dehydrogenase-like [Cucumis sativus] gi|118564|sp|P13443.1|DHGY_CUCSA RecName: Full=Glycerate dehydrogenase; Short=GDH; AltName: Full=NADH-dependent hydroxypyruvate reductase; Short=HPR gi|18264|emb|CAA41434.1| NADH-dependent hydroxypyruvate reductase [Cucumis sativus] gi|18275|emb|CAA32764.1| unnamed protein product [Cucumis sativus]

 Score =  452 bits (1162), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 227/241 (94%), Positives = 236/241 (97%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPV IEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICT+KKTILSVEDI+ALIG
Sbjct: 1   MAKPVQIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTEKKTILSVEDILALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGE LF+ALSRAGGKAFSNMAVGYNNVDVNAANKYG+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGEVLFSALSRAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEADEFMRAG YDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRAGRYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240
           ARMMVEGFKMNLIY+DLYQ+TRLEKFVTAYG+FLKANGE PVTW+RASSMDEVLREADV+
Sbjct: 181 ARMMVEGFKMNLIYFDLYQSTRLEKFVTAYGEFLKANGEAPVTWRRASSMDEVLREADVI 240

Query: 241 C 241
            
Sbjct: 241 S 241

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493492|gb|AFK34812.1| unknown [Lotus japonicus]

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 223/241 (92%), Positives = 236/241 (97%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPVSIEVWNP+GKYRVVSTKPMPGTRWINLLI+QDCR+EICT+KKTILSVEDIIALIG
Sbjct: 1   MAKPVSIEVWNPSGKYRVVSTKPMPGTRWINLLIQQDCRLEICTEKKTILSVEDIIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           +KCDGVIGQLTEDWGE LF+ALSRAGGKAFSNMAVGYNNVDVNAANKYG+AVGNTPGVLT
Sbjct: 61  EKCDGVIGQLTEDWGEELFSALSRAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASL+LAAARRIVEADEFMRAGLYDGWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLTLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240
           ARMMVEGFKMNLIYYDLYQ+TRLEKFVTAY  FLKANGE PVTWKRASSMDEVL+EAD++
Sbjct: 181 ARMMVEGFKMNLIYYDLYQSTRLEKFVTAYAAFLKANGETPVTWKRASSMDEVLQEADII 240

Query: 241 C 241
            
Sbjct: 241 S 241

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1304042|dbj|BAA08410.1| hydroxypyruvate reductase [Cucurbita cv. Kurokawa Amakuri]

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 224/240 (93%), Positives = 233/240 (97%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MA  V +EVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICT+KKTILSVEDI+ALIG
Sbjct: 1   MANRVQVEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTEKKTILSVEDIVALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGE LF+ALSRAG KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGEVLFSALSRAGCKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEADEFMRAG YDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRAGHYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240
           ARMMVEGFKMNLIY+DLYQ+TRLEKFVTAYG+FLKANGE PVTW+RASSMDEVLREADV+
Sbjct: 181 ARMMVEGFKMNLIYFDLYQSTRLEKFVTAYGEFLKANGEVPVTWRRASSMDEVLREADVI 240

Source: Cucurbita cv. Kurokawa Amakuri

Species: Cucurbita hybrid cultivar

Genus: Cucurbita

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1304044|dbj|BAA08411.1| hydroxypyruvate reductase [Cucurbita cv. Kurokawa Amakuri]

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 224/240 (93%), Positives = 233/240 (97%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MA  V +EVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICT+KKTILSVEDI+ALIG
Sbjct: 1   MANRVQVEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTEKKTILSVEDIVALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGE LF+ALSRAG KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGEVLFSALSRAGCKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEADEFMRAG YDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRAGHYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240
           ARMMVEGFKMNLIY+DLYQ+TRLEKFVTAYG+FLKANGE PVTW+RASSMDEVLREADV+
Sbjct: 181 ARMMVEGFKMNLIYFDLYQSTRLEKFVTAYGEFLKANGEVPVTWRRASSMDEVLREADVI 240

Source: Cucurbita cv. Kurokawa Amakuri

Species: Cucurbita hybrid cultivar

Genus: Cucurbita

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
TIGR_CMR|BA_1434	323	BA_1434 "D-isomer specific 2-h	0.651	0.492	0.337	4.6e-18
TIGR_CMR|SPO_0913	317	SPO_0913 "D-isomer specific 2-	0.713	0.548	0.297	4.1e-17
UNIPROTKB|Q0BWN7	328	gyaR "Glyoxylate reductase" [H	0.778	0.579	0.298	9.3e-17
UNIPROTKB|G4NFT6	349	MGG_08725 "D-lactate dehydroge	0.586	0.409	0.312	2.6e-15
TIGR_CMR|SPO_1570	330	SPO_1570 "D-isomer specific 2-	0.717	0.530	0.280	5.3e-15
TIGR_CMR|BA_5135	330	BA_5135 "D-isomer specific 2-h	0.774	0.572	0.274	1.6e-13
FB|FBgn0037370	362	CG1236 [Drosophila melanogaste	0.864	0.582	0.287	2.8e-13
TAIR|locus:2090649	588	AT3G19480 [Arabidopsis thalian	0.709	0.294	0.313	3.9e-13
UNIPROTKB|Q48MK5	324	PSPPH_1099 "D-isomer specific	0.553	0.416	0.317	5.4e-13
TIGR_CMR|CHY_2698	525	CHY_2698 "D-3-phosphoglycerate	0.688	0.32	0.305	1.4e-12

TIGR_CMR|BA_1434 BA_1434 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 56/166 (33%), Positives = 86/166 (51%)

Query:    30 INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL-TEDWGETLFAALSRAGGK 88
             I L + +D  VE+   K+ ++S++++   + DK D ++  L T+   E + AA S    K
Sbjct:    13 IGLELLKDHDVEMY-DKEELISLDELTERVKDK-DALLSLLSTKVTKEVIDAAPSL---K 67

Query:    89 AFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAG 148
               +N   GY+N+D   A + GIAV NTP V                 RRI E D   R  
Sbjct:    68 IVANYGAGYDNIDYTYAGEKGIAVTNTPKVSTEATAELTFALLLAAARRIPEGDTLCRTT 127

Query:   149 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
              ++GW P  F+G  + G+T+G+IG G IG A A+   + F MN++Y
Sbjct:   128 GFNGWAPLFFLGREVHGKTIGIIGLGEIGKAVAKR-AKAFGMNILY 172

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

TIGR_CMR|SPO_0913 SPO_0913 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 53/178 (29%), Positives = 84/178 (47%)

Query:    17 RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE 76
             +++  +PM  T  +      +   EI T    +   E + AL   + D V+  L + +  
Sbjct:     2 KLLIARPM--TAAVEARARAEFETEIRTSTTPLSEAEMLRAL--REFDIVMPTLGDMFSA 57

Query:    77 TLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXR 136
              +FA +     +  +N  VGYN++ V AA   G+AV NTPG                  R
Sbjct:    58 DVFAQVPEPRCRLLANFGVGYNHIAVAAARAAGVAVTNTPGAVTDATADIAMTLLLMTAR 117

Query:   137 RIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
             R  E +  +R+G ++GW P   +G+ + G+ VG++G GRIG A AR    GF M + Y
Sbjct:   118 RAGEGERLVRSGAWEGWHPTQMLGHHVTGKHVGIVGLGRIGQAIARRCHFGFGMQVSY 175

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

UNIPROTKB|Q0BWN7 gyaR "Glyoxylate reductase" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 208 (78.3 bits), Expect = 9.3e-17, P = 9.3e-17
 Identities = 60/201 (29%), Positives = 95/201 (47%)

Query:    12 PNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLT 71
             P  K +VV T+ +P    + +    D R+    +     SVE++   +    D ++  +T
Sbjct:     2 PASKLKVVVTRKLPAPVELRMKELFDARLN---ESDRPFSVEELAQAM-QTADVLVPTVT 57

Query:    72 EDWGETLFAALSRAGG--KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXX 129
             +     L A   RAG   +  +    G +N+DV +A + GI V NTPGV           
Sbjct:    58 DKIDGRLMA---RAGDQLRLIAQFGAGVDNIDVASAVQRGITVTNTPGVLTDDTADVAMA 114

Query:   130 XXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFK 189
                   RR+ E  + M AG +DGW P   +G  L G+ +G+IG GRIG A AR     F 
Sbjct:   115 LILAVPRRMHEGVQIMEAGKFDGWTPTWMMGRRLSGKRLGIIGMGRIGQAVARR-ARAFG 173

Query:   190 MNLIYYDLYQ-ATRLEKFVTA 209
             M + Y++    ++R+E+ + A
Sbjct:   174 MQIHYHNRKPVSSRIEESLEA 194

GO:0046487 "glyoxylate metabolic process" evidence=ISS

GO:0047964 "glyoxylate reductase activity" evidence=ISS

UNIPROTKB|G4NFT6 MGG_08725 "D-lactate dehydrogenase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 177 (67.4 bits), Expect = 2.6e-15, Sum P(2) = 2.6e-15
 Identities = 46/147 (31%), Positives = 71/147 (48%)

Query:    64 DGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXX 123
             + V   + ++    +   LS  G         G+NNVD++ A++ G++V N P       
Sbjct:    50 EAVCAFVNDNLSRPVLEGLSDLGVTTILLRCAGFNNVDLDCASQLGLSVANVPSYSPEAV 109

Query:   124 XXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARM 183
                         R+   A   +R G ++  L  L +G  L G+TVGV+G GRIG A+AR+
Sbjct:   110 GEFAVALLQTVNRKTHRAYNRVREGNFN--LDGL-LGRTLHGKTVGVVGTGRIGIAFARI 166

Query:   184 MVEGFKMNLIYYDLYQATRLEKFVTAY 210
             MV GF   L+ YD+YQ   + K   +Y
Sbjct:   167 MV-GFGCKLLAYDVYQNEEVGKLGGSY 192

GO:0005575 "cellular_component" evidence=ND

GO:0043581 "mycelium development" evidence=IEP

TIGR_CMR|SPO_1570 SPO_1570 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 193 (73.0 bits), Expect = 5.3e-15, P = 5.3e-15
 Identities = 51/182 (28%), Positives = 83/182 (45%)

Query:    13 NGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTE 72
             N K RV+ T+  P    +   + +    +       + S E   AL   + D ++  +T+
Sbjct:     8 NSKPRVLVTRRWPAA--VEAQLAERFDTQFNRTDTPLTSAEFRSALA--RFDAILPTVTD 63

Query:    73 DWG-ETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXX 131
               G E L     +   +  +N  VGY+++D +A   +GI V NTP V             
Sbjct:    64 KLGAEALDVTAPQT--RLLANYGVGYSHIDSDAVRAHGITVSNTPDVLSECTADIAMTLM 121

Query:   132 XXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMN 191
                 RR  E +  +RAG + GW P   VG+ + G+ +G++G GRIG A A+    GF M 
Sbjct:   122 LMVARRAGEGERELRAGQWTGWRPTHLVGSKVSGKVLGIVGFGRIGQAMAQRAHHGFGMK 181

Query:   192 LI 193
             ++
Sbjct:   182 IL 183

GO:0008152 "metabolic process" evidence=ISS

GO:0050578 "(R)-2-hydroxyacid dehydrogenase activity" evidence=ISS

TIGR_CMR|BA_5135 BA_5135 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 180 (68.4 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 54/197 (27%), Positives = 90/197 (45%)

Query:    15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
             K +V   +P+P   ++   + + C  E   Q + +   + ++  I DK DG++       
Sbjct:    12 KPKVYIAEPVP--TFVENYLSEHCDYEKWEQNEKVPR-DVLLEKIQDK-DGLLN-FGSAI 66

Query:    75 GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXX 134
              E L  A      K  SN++VGY+N D+ A  K+ +   NTP V                
Sbjct:    67 NEELLEAAPNL--KVVSNISVGYDNFDLQAMAKHNVIGTNTPYVLDDTVADLVFALMLSA 124

Query:   135 XRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
              RR+ E D +++ G ++  +     G  +   T+G+IG GRIG A A+    GF M+++Y
Sbjct:   125 GRRVCELDSYVKNGEWNAEIGKEHFGLDVHHSTIGIIGMGRIGEAVAKRAKFGFDMDVLY 184

Query:   195 YDLYQATRLE-KFVTAY 210
             Y+  +    E KF   Y
Sbjct:   185 YNRRRKEEAEQKFDATY 201

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

FB|FBgn0037370 CG1236 [Drosophila melanogaster (taxid:7227)]

 Score = 179 (68.1 bits), Expect = 2.8e-13, P = 2.8e-13
 Identities = 67/233 (28%), Positives = 102/233 (43%)

Query:    13 NGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTE 72
             + +++V  T+P      + LL  + C+V    +   +   E +I ++  K D +   LT+
Sbjct:    39 SSQHKVYVTRPDVDDSGLELL-RKSCQVSTWHETNPVPRSE-LIRVVAGK-DALYCALTD 95

Query:    73 DWG-ETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXX 131
                 E L AA  +   K  + ++VGY+++DV    K GI VG TP V             
Sbjct:    96 KVDKEVLDAAGPQL--KCVATISVGYDHIDVEECRKRGIRVGFTPDVLTDATAELTLALL 153

Query:   132 XXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMN 191
                 RR+ EA++ +  G +  W P    G  LKG  VG++G GRIG   A  +V  FK  
Sbjct:   154 LATNRRLFEANKQVYNGGWKSWAPMWMCGQGLKGSRVGLLGFGRIGQEIAARIVP-FKPT 212

Query:   192 LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244
              I Y     TR           L+      V   R    DE+LRE+D++   C
Sbjct:   213 EITY----TTRS----------LRPKEAAAVN-ARHVDFDEMLRESDLIVVCC 250

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

TAIR|locus:2090649 AT3G19480 [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 3.9e-13, P = 3.9e-13
 Identities = 58/185 (31%), Positives = 89/185 (48%)

Query:    14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTED 73
             GK  ++ T+ + G   I+LL ++   V+ C+     LS+E++   I   CD +I +    
Sbjct:    45 GKPTILVTEKL-GQAGIDLL-KKYANVD-CSYD---LSLEELCTKIS-LCDALIVRSGTK 97

Query:    74 WGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXX 133
              G  +F + SR   K      VG +NVD+ AA +YG  V N P                 
Sbjct:    98 VGRDVFES-SRGRLKVVGRAGVGIDNVDLAAATEYGCLVVNAPTANTVAAAEHGIALLTA 156

Query:   134 XXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI 193
               R I +AD  ++AG    W  N +VG  L G+T+ V+G G++GS  AR    G  M++I
Sbjct:   157 MARNIAQADASIKAGK---WTRNKYVGVSLVGKTLAVLGFGKVGSEVARR-ARGLGMHVI 212

Query:   194 YYDLY 198
              +D Y
Sbjct:   213 THDPY 217

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=IEA

GO:0006564 "L-serine biosynthetic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016597 "amino acid binding" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

UNIPROTKB|Q48MK5 PSPPH_1099 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 175 (66.7 bits), Expect = 5.4e-13, P = 5.4e-13
 Identities = 48/151 (31%), Positives = 75/151 (49%)

Query:    91 SNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLY 150
             S+++VGY+N DV+  ++ GI + NTP V                 RR+ E D + +AG +
Sbjct:    71 SSISVGYDNYDVDYLSERGILLTNTPDVLTESTADLGFSLIMSSARRVAELDAYTKAGQW 130

Query:   151 DGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY 210
                +     G  + G+T+G++G G IG+A AR    GF M ++Y    + T LE+ + A 
Sbjct:   131 TRSIEPPHFGTDVHGKTLGIVGMGNIGAAIARRGRLGFNMPILYSGNSRKTELEQELGA- 189

Query:   211 GQFLKANGEQPVTWKRASSMDEVLREADVVC 241
              QF               S+D++L EAD VC
Sbjct:   190 -QF--------------RSLDQLLAEADFVC 205

GO:0005575 "cellular_component" evidence=ND

TIGR_CMR|CHY_2698 CHY_2698 "D-3-phosphoglycerate dehydrogenase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 176 (67.0 bits), Expect = 1.4e-12, P = 1.4e-12
 Identities = 55/180 (30%), Positives = 90/180 (50%)

Query:    17 RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE 76
             R++++ P+   + +N+L E+   V+    +KT LS E++I +I      ++   T+    
Sbjct:     2 RILASDPI-AEKGLNILREEGFIVD----EKTKLSEEELIKIIPQYDALIVRSETKVTAR 56

Query:    77 TLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXR 136
              + AA +    K      VG +N+D+ AA+K GI V N+P                   R
Sbjct:    57 IIEAAENL---KIIGRAGVGVDNIDLAAASKKGIIVVNSPEGNTIAAAEHTFALMMALLR 113

Query:   137 RIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD 196
              I +A   ++ G    WL   F G  L+G+TVG+IG GRIG+A A+  V+ F+  +I YD
Sbjct:   114 NIPQAHAALKEGK---WLRKEFTGYELRGKTVGIIGLGRIGTAVAKR-VKAFETRVIGYD 169

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=ISS

GO:0006564 "L-serine biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C9W5	HPR1_ARATH	1, ., 1, ., 1, ., 2, 9	0.9211	0.9877	0.6243	yes	no
P13443	DHGY_CUCSA	1, ., 1, ., 1, ., 2, 9	0.9419	0.9877	0.6308	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.963

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00036132001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (418 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00022240001	SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (401 aa)	•			•			•		0.664
	GSVIVG00034383001	SubName- Full=Putative uncharacterized protein (Chromosome chr9 scaffold_7, whole genome shotgu [...] (144 aa)				•					0.442
	GSVIVG00025097001	SubName- Full=Putative uncharacterized protein (Chromosome chr4 scaffold_32, whole genome shotg [...] (221 aa)				•					0.416
	GSVIVG00015518001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (99 aa)				•					0.412
	GSVIVG00011932001	SubName- Full=Chromosome undetermined scaffold_2569, whole genome shotgun sequence; (393 aa)				•					0.412
	GSVIVG00015393001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (270 aa)				•					0.411
	GSVIVG00037644001	SubName- Full=Chromosome chr9 scaffold_90, whole genome shotgun sequence; (395 aa)				•					0.408
	GSVIVG00036212001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (397 aa)				•					0.406
	GSVIVG00026129001	SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (273 aa)				•					0.402
	GSVIVG00024835001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (329 aa)				•					0.400

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	244
PLN02306	386	PLN02306, PLN02306, hydroxypyruvate reductase	0.0
cd05301	309	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyr	2e-76
cd12172	306	cd12172, PGDH_like_2, Putative D-3-Phosphoglycerat	4e-43
cd12178	317	cd12178, 2-Hacid_dh_13, Putative D-isomer specific	2e-40
cd05198	302	cd05198, formate_dh_like, Formate/glycerate and re	5e-39
PRK13243	333	PRK13243, PRK13243, glyoxylate reductase; Reviewed	7e-39
COG1052	324	COG1052, LdhA, Lactate dehydrogenase and related d	1e-38
cd12173	304	cd12173, PGDH_4, Phosphoglycerate dehydrogenases,	2e-38
pfam00389	312	pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxy	3e-35
COG0111	324	COG0111, SerA, Phosphoglycerate dehydrogenase and	1e-33
cd05303	301	cd05303, PGDH_2, Phosphoglycerate dehydrogenase (P	2e-28
cd05299	312	cd05299, CtBP_dh, C-terminal binding protein (CtBP	3e-28
cd12186	329	cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydr	4e-28
cd12177	321	cd12177, 2-Hacid_dh_12, Putative D-isomer specific	2e-27
cd12157	318	cd12157, PTDH, Thermostable Phosphite Dehydrogenas	2e-27
cd12175	311	cd12175, 2-Hacid_dh_11, Putative D-isomer specific	3e-27
PRK13581	526	PRK13581, PRK13581, D-3-phosphoglycerate dehydroge	6e-27
cd12156	301	cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase,	1e-25
cd12171	310	cd12171, 2-Hacid_dh_10, Putative D-isomer specific	1e-25
cd12183	328	cd12183, LDH_like_2, D-Lactate and related Dehydro	1e-23
cd01619	323	cd01619, LDH_like, D-Lactate and related Dehydroge	1e-23
TIGR01327	525	TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenas	2e-23
cd12168	321	cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-l	2e-23
cd12174	305	cd12174, PGDH_like_3, Putative D-3-Phosphoglycerat	6e-23
PRK15409	323	PRK15409, PRK15409, bifunctional glyoxylate/hydrox	1e-22
pfam02826	175	pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro	1e-22
cd12187	329	cd12187, LDH_like_1, D-Lactate and related Dehydro	3e-20
cd12162	307	cd12162, 2-Hacid_dh_4, Putative D-isomer specific	3e-19
cd12161	315	cd12161, GDH_like_1, Putative glycerate dehydrogen	4e-19
cd12169	308	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerat	5e-19
cd12185	322	cd12185, HGDH_LDH_like, Putative Lactate dehydroge	1e-18
cd12176	304	cd12176, PGDH_3, Phosphoglycerate dehydrogenases,	2e-18
PRK08605	332	PRK08605, PRK08605, D-lactate dehydrogenase; Valid	6e-16
cd12167	330	cd12167, 2-Hacid_dh_8, Putative D-isomer specific	2e-15
cd12165	314	cd12165, 2-Hacid_dh_6, Putative D-isomer specific	2e-14
cd12184	330	cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydro	4e-14
PRK11790	409	PRK11790, PRK11790, D-3-phosphoglycerate dehydroge	5e-13
PRK08410	311	PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; P	1e-12
PLN02928	347	PLN02928, PLN02928, oxidoreductase family protein	4e-11
PRK06487	317	PRK06487, PRK06487, glycerate dehydrogenase; Provi	8e-11
cd12179	306	cd12179, 2-Hacid_dh_14, Putative D-isomer specific	8e-11
PRK12480	330	PRK12480, PRK12480, D-lactate dehydrogenase; Provi	1e-10
cd05302	348	cd05302, FDH, NAD-dependent Formate Dehydrogenase	6e-10
PRK07574	385	PRK07574, PRK07574, formate dehydrogenase; Provisi	3e-09
PRK06932	314	PRK06932, PRK06932, glycerate dehydrogenase; Provi	7e-08
cd12158	343	cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Deh	4e-07
cd12166	300	cd12166, 2-Hacid_dh_7, Putative D-isomer specific	7e-06
cd12159	303	cd12159, 2-Hacid_dh_2, Putative D-isomer specific	8e-06
PRK06436	303	PRK06436, PRK06436, glycerate dehydrogenase; Provi	9e-06
cd05300	313	cd05300, 2-Hacid_dh_1, Putative D-isomer specific	2e-05
PLN03139	386	PLN03139, PLN03139, formate dehydrogenase; Provisi	9e-05
cd12155	314	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2	0.001
cd12154	310	cd12154, FDH_GDH_like, Formate/glycerate dehydroge	0.002
TIGR03944	327	TIGR03944, dehyd_SbnB_fam, 2,3-diaminopropionate b	0.004

>gnl|CDD|177941 PLN02306, PLN02306, hydroxypyruvate reductase

 Score =  509 bits (1313), Expect = 0.0
 Identities = 228/240 (95%), Positives = 239/240 (99%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPVSIEV+NPNGKYRVVSTKPMPGTRWINLL++QDCRVEICT+KKTILSVEDIIALIG
Sbjct: 1   MAKPVSIEVYNPNGKYRVVSTKPMPGTRWINLLVDQDCRVEICTEKKTILSVEDIIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLF+ALS+AGGKAFSNMAVGYNNVDV AANKYGIAVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFSALSKAGGKAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEADEFMRAGLY+GWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240
           ARMMVEGFKMNLIYYDLYQ+TRLEKFVTAYGQFLKANGEQPVTWKRASSM+EVLREADV+
Sbjct: 181 ARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVI 240

Length = 386

>gnl|CDD|240626 cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH)

 Score =  233 bits (596), Expect = 2e-76
 Identities = 82/229 (35%), Positives = 123/229 (53%), Gaps = 23/229 (10%)

Query: 16  YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWG 75
            +V+ T+ +P    + LL  +   VE+   +   L  E+++       DG++  LT+   
Sbjct: 1   PKVLVTRRLPE-EALALL-REGFEVEVW-DEDRPLPREELLEAAKG-ADGLLCTLTDKID 56

Query: 76  ETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAA 135
             L  A      K  +N +VGY+++DV+AA   GI V NTP VLT+ TA+LA +L LAAA
Sbjct: 57  AELLDAAPPL--KVIANYSVGYDHIDVDAAKARGIPVTNTPDVLTDATADLAFALLLAAA 114

Query: 136 RRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 195
           RR+VE D F+RAG + GW P L +G  L G+T+G++G GRIG A AR    GF M ++Y+
Sbjct: 115 RRVVEGDRFVRAGEWKGWSPTLLLGTDLHGKTLGIVGMGRIGQAVARRAK-GFGMKILYH 173

Query: 196 DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244
           +  +    E+ + A                   S+DE+L E+D V   C
Sbjct: 174 NRSRKPEAEEELGAR----------------YVSLDELLAESDFVSLHC 206

D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 309

>gnl|CDD|240649 cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  147 bits (373), Expect = 4e-43
 Identities = 80/210 (38%), Positives = 111/210 (52%), Gaps = 29/210 (13%)

Query: 32  LLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVI-GQLTEDWGETLFAALSRAGGKAF 90
           LL      V +    +  L+ E++I L+ D  DGVI G   +   E + AA  R   K  
Sbjct: 19  LLEAAGFEVVLNPLGR-PLTEEELIELLKD-ADGVIAG--LDPITEEVLAAAPRL--KVI 72

Query: 91  SNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY 150
           S   VGY+N+D+ AA K GI V NTPG  + + AEL   L LA AR+I +AD  +RAG  
Sbjct: 73  SRYGVGYDNIDLEAAKKRGIVVTNTPGANSNSVAELTIGLMLALARQIPQADREVRAG-- 130

Query: 151 DGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY 210
            GW     VG  L G+T+G+IG GRIG A AR +  GF M ++ YD Y            
Sbjct: 131 -GWDR--PVGTELYGKTLGIIGLGRIGKAVARRLS-GFGMKVLAYDPYPDE--------- 177

Query: 211 GQFLKANGEQPVTWKRASSMDEVLREADVV 240
            +F K +G + V      S++E+L+E+D +
Sbjct: 178 -EFAKEHGVEFV------SLEELLKESDFI 200

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 306

>gnl|CDD|240655 cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  140 bits (356), Expect = 2e-40
 Identities = 73/214 (34%), Positives = 109/214 (50%), Gaps = 34/214 (15%)

Query: 34  IEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTE-------DWGETLFAALSRAG 86
           +E++  V        ++S E+++  I D  D +I  L+        D  + L        
Sbjct: 17  LEENFEV-TYYDGLGLISKEELLERIAD-YDALITPLSTPVDKEIIDAAKNL-------- 66

Query: 87  GKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMR 146
            K  +N   G++N+DV+ A + GI V NTP V TE TAEL   L LA ARRI E D  MR
Sbjct: 67  -KIIANYGAGFDNIDVDYAKEKGIPVTNTPAVSTEPTAELTFGLILALARRIAEGDRLMR 125

Query: 147 AGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF 206
            G + GW P  F+G+ L G+T+G+IG GRIG A AR   + F M ++YY+ ++ +   + 
Sbjct: 126 RGGFLGWAPLFFLGHELAGKTLGIIGMGRIGQAVAR-RAKAFGMKILYYNRHRLSEETE- 183

Query: 207 VTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240
               G           T+     +DE+L+E+D V
Sbjct: 184 -KELG----------ATYV---DLDELLKESDFV 203

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 317

>gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family

 Score =  136 bits (345), Expect = 5e-39
 Identities = 63/197 (31%), Positives = 91/197 (46%), Gaps = 23/197 (11%)

Query: 48  TILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANK 107
             L  +++ AL+ D  D +I   T      + A   +   K       G +N+D++AA K
Sbjct: 28  DDLLADELEALLAD-ADALIVSSTTPVTAEVLAKAPKL--KFIQVAGAGVDNIDLDAAKK 84

Query: 108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQT 167
            GI V N PG   E  AE A  L LA  RR+  AD  +R G    W    F G  L+G+T
Sbjct: 85  RGITVTNVPGANAEAVAEHALGLLLALLRRLPRADAAVRRGWGWLWAG--FPGYELEGKT 142

Query: 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA 227
           VG++G GRIG   A+ + + F M ++YYD  +    E+                    R 
Sbjct: 143 VGIVGLGRIGQRVAKRL-QAFGMKVLYYDRTRKPEPEED----------------LGFRV 185

Query: 228 SSMDEVLREADVVCTLC 244
            S+DE+L ++DVV  L 
Sbjct: 186 VSLDELLAQSDVV-VLH 201

Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302

>gnl|CDD|183914 PRK13243, PRK13243, glyoxylate reductase; Reviewed

 Score =  137 bits (346), Expect = 7e-39
 Identities = 84/230 (36%), Positives = 125/230 (54%), Gaps = 27/230 (11%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           K +V  T+ +P    I +L E+   VE+   ++ I   E ++  + D  D ++  L+E  
Sbjct: 2   KPKVFITREIP-ENGIEML-EEHFEVEVWEDEREI-PREVLLEKVRD-VDALVTMLSERI 57

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              +F A  R   +  +N AVGY+N+DV  A + GI V NTPGVLTE TA+ A +L LA 
Sbjct: 58  DCEVFEAAPRL--RIVANYAVGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLAT 115

Query: 135 ARRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM 190
           ARR+VEAD F+R+G +      W P +F+G  + G+T+G+IG GRIG A AR   +GF M
Sbjct: 116 ARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVAR-RAKGFGM 174

Query: 191 NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240
            ++YY   +    EK + A                    ++E+LRE+D V
Sbjct: 175 RILYYSRTRKPEAEKELGA----------------EYRPLEELLRESDFV 208

Length = 333

>gnl|CDD|223980 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

 Score =  136 bits (345), Expect = 1e-38
 Identities = 71/229 (31%), Positives = 110/229 (48%), Gaps = 25/229 (10%)

Query: 14  GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTED 73
            K  V+ST+ +P    +   +++   VE        L+ +  +A      D VI  + + 
Sbjct: 1   MKIVVLSTRKLP--PEVLERLKEKFEVERYEDD---LTPDTELAERLKDADAVITFVNDR 55

Query: 74  WGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLA 133
               +   L     K  +  + GY+NVD+ AA + GI V N PG  TE  AE A +L LA
Sbjct: 56  IDAEVLEKLPGL--KLIATRSAGYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILA 113

Query: 134 AARRIVEADEFMRAGLYDGW-LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNL 192
            ARRI E D  +R G +     P+  +G  L+G+T+G+IG GRIG A AR + +GF M +
Sbjct: 114 LARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRL-KGFGMKV 172

Query: 193 IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC 241
           +YYD       EK      +++               +DE+L E+D++ 
Sbjct: 173 LYYDRSPNPEAEK--ELGARYV--------------DLDELLAESDIIS 205

Length = 324

>gnl|CDD|240650 cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score =  135 bits (342), Expect = 2e-38
 Identities = 72/222 (32%), Positives = 102/222 (45%), Gaps = 49/222 (22%)

Query: 30  INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVI----GQLTEDWGETLFAA---- 81
           + LL E    V++       LS E+++A+I D  D +I     ++T +    +  A    
Sbjct: 13  LELLREAGIEVDV----APGLSEEELLAIIAD-ADALIVRSATKVTAE----VIEAAPRL 63

Query: 82  --LSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIV 139
             + RAG        VG +N+DV AA   GI V N PG  T + AE   +L LA AR I 
Sbjct: 64  KVIGRAG--------VGVDNIDVEAATARGILVVNAPGANTISVAEHTIALMLALARNIP 115

Query: 140 EADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY- 198
           +AD  +RAG    W    F+G  L+G+T+G++G GRIG   AR     F M ++ YD Y 
Sbjct: 116 QADASLRAG---KWDRKKFMGVELRGKTLGIVGLGRIGREVARRAR-AFGMKVLAYDPYI 171

Query: 199 QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240
            A R                          S+DE+L EAD +
Sbjct: 172 SAERAAAGGV-----------------ELVSLDELLAEADFI 196

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|215893 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain

 Score =  127 bits (320), Expect = 3e-35
 Identities = 58/182 (31%), Positives = 85/182 (46%), Gaps = 11/182 (6%)

Query: 33  LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN 92
           L+++   VE+  +    L  E+++    D  D +I + T      +  A      K  + 
Sbjct: 14  LLKEGGEVEVHDE----LLTEELLEAAKD-ADALIVRSTTPVTAEVLEAAPGL--KVIAR 66

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152
             VG +N+D++AA + GI V N PG  TE+ AEL   L LA ARRI EAD  +RAG +  
Sbjct: 67  RGVGVDNIDLDAATERGILVTNVPGYSTESVAELTVGLILALARRIPEADASVRAGDWKK 126

Query: 153 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
             P       L G+T+GVIG G IG   A +  +   M ++ YD Y      +       
Sbjct: 127 GGPIGL---ELYGKTLGVIGGGGIGGIGAAIA-KALGMGVVAYDPYPNPERAEEGGVEVL 182

Query: 213 FL 214
            L
Sbjct: 183 LL 184

This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain. Length = 312

>gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

 Score =  123 bits (311), Expect = 1e-33
 Identities = 65/189 (34%), Positives = 86/189 (45%), Gaps = 22/189 (11%)

Query: 52  VEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIA 111
            E+ +       D +I  +T    E + AA      KA      G +N+D+ AA K GI 
Sbjct: 35  DEEELLEALADADALIVSVTP-VTEEVLAAAPN--LKAIGRAGAGVDNIDLEAATKRGIL 91

Query: 112 VGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI 171
           V N PG    + AEL  +L LA ARRI +AD   R G    W    F G  L G+TVG+I
Sbjct: 92  VVNAPGGNAISVAELVLALLLALARRIPDADASQRRG---EWDRKAFRGTELAGKTVGII 148

Query: 172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD 231
           G GRIG A A+ + + F M +I YD Y            G                 S+D
Sbjct: 149 GLGRIGRAVAKRL-KAFGMKVIGYDPYSPRERAGVDGVVG---------------VDSLD 192

Query: 232 EVLREADVV 240
           E+L EAD++
Sbjct: 193 ELLAEADIL 201

Length = 324

>gnl|CDD|240628 cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains

 Score =  109 bits (274), Expect = 2e-28
 Identities = 48/147 (32%), Positives = 71/147 (48%), Gaps = 20/147 (13%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
           VG +N+DV  A K GI V NTPG  + + AEL   L L+ AR I  A+  M+ G    W 
Sbjct: 72  VGLDNIDVEYAKKKGIKVINTPGASSNSVAELVIGLMLSLARFIHRANREMKLG---KWN 128

Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
              + G  L+G+T+G+IG GRIG   A+ +     MN+I YD Y        +       
Sbjct: 129 KKKYKGIELRGKTLGIIGFGRIGREVAK-IARALGMNVIAYDPYPKDEQAVELGV----- 182

Query: 215 KANGEQPVTWKRASSMDEVLREADVVC 241
                      +  S++E+L+ +D + 
Sbjct: 183 -----------KTVSLEELLKNSDFIS 198

Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 301

>gnl|CDD|240624 cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

 Score =  108 bits (272), Expect = 3e-28
 Identities = 62/193 (32%), Positives = 92/193 (47%), Gaps = 33/193 (17%)

Query: 53  EDIIALIGDKCDGVIGQ---LTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYG 109
           +++I    D  D ++ Q   +T +    +  AL R   K      VG +NVDV AA + G
Sbjct: 36  DELIEAAAD-ADALLVQYAPVTAE----VIEALPR--LKVIVRYGVGVDNVDVAAATERG 88

Query: 110 IAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNL--LKGQT 167
           I V N P   TE  A+ A +L LA AR++   D  +RAG +D  +     G +  L+G T
Sbjct: 89  IPVCNVPDYCTEEVADHALALILALARKLPFLDRAVRAGGWDWTV----GGPIRRLRGLT 144

Query: 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA 227
           +G++G GRIG A A+   + F   +I YD Y                  +G   +   R 
Sbjct: 145 LGLVGFGRIGRAVAKRA-KAFGFRVIAYDPY----------------VPDGVAALGGVRV 187

Query: 228 SSMDEVLREADVV 240
            S+DE+L  +DVV
Sbjct: 188 VSLDELLARSDVV 200

The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity. Length = 312

>gnl|CDD|240662 cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains

 Score =  108 bits (273), Expect = 4e-28
 Identities = 54/178 (30%), Positives = 89/178 (50%), Gaps = 20/178 (11%)

Query: 63  CDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTET 122
            DGV+ Q T  + E ++  L+  G K  +  + G + +D++ A + G+ + N P      
Sbjct: 45  YDGVVVQQTLPYDEEVYEKLAEYGIKQIALRSAGVDMIDLDLAKENGLKITNVPAYSPRA 104

Query: 123 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYAR 182
            AE A + +L   R   E D  +  G +  W P L +G  ++  TVG+IG GRIGSA A+
Sbjct: 105 IAEFAVTQALNLLRNTPEIDRRVAKGDFR-WAPGL-IGREIRDLTVGIIGTGRIGSAAAK 162

Query: 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240
           +  +GF   +I YD Y    LEKF+  Y                  S++++L++AD++
Sbjct: 163 IF-KGFGAKVIAYDPYPNPELEKFLLYY-----------------DSLEDLLKQADII 202

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|240654 cd12177, 2-Hacid_dh_12, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  107 bits (268), Expect = 2e-27
 Identities = 56/177 (31%), Positives = 92/177 (51%), Gaps = 21/177 (11%)

Query: 66  VIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPG-VLTETTA 124
           +I  +T ++ +  F        K  +   +GY+NVD+ AA ++G+ V   PG V  +  A
Sbjct: 51  IIASVTPNFDKEFFEYNDGL--KLIARHGIGYDNVDLKAATEHGVIVTRVPGAVERDAVA 108

Query: 125 ELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMM 184
           E A +L L   R+I +A E ++ G +       FVG+ L G+TVG+IG G IGS  A ++
Sbjct: 109 EHAVALILTVLRKINQASEAVKEGKWT--ERANFVGHELSGKTVGIIGYGNIGSRVAEIL 166

Query: 185 VEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC 241
            EGF   ++ YD Y +           + +K  G +PV      S++E+L E+D++ 
Sbjct: 167 KEGFNAKVLAYDPYVSE----------EVIKKKGAKPV------SLEELLAESDIIS 207

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 321

>gnl|CDD|240634 cd12157, PTDH, Thermostable Phosphite Dehydrogenase

 Score =  106 bits (268), Expect = 2e-27
 Identities = 70/225 (31%), Positives = 103/225 (45%), Gaps = 23/225 (10%)

Query: 17  RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE 76
           +VV T  +     + LL +  C V      +  LS E+++    D  DG++  + +    
Sbjct: 3   KVVITHKVH-PEVLELL-KPHCEVISNQTDEP-LSREELLRRCKD-ADGLMAFMPDRIDA 58

Query: 77  TLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAAR 136
               A  R   K  +    GY+N DV A    GI V   P +LTE TAEL   L +   R
Sbjct: 59  DFLDACPRL--KIIACALKGYDNFDVEACTARGIWVTIVPDLLTEPTAELTIGLLIGLGR 116

Query: 137 RIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD 196
            I+  D F+R+G + GW P  + G  L G+TVG++G G +G A AR +  GF   L+YYD
Sbjct: 117 HILAGDRFVRSGKFGGWRPKFY-GTGLDGKTVGILGMGALGRAIARRLS-GFGATLLYYD 174

Query: 197 LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC 241
                 L++   A  Q L           R   +DE+L  +D + 
Sbjct: 175 ---PHPLDQ---AEEQALNL---------RRVELDELLESSDFLV 204

Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain. Length = 318

>gnl|CDD|240652 cd12175, 2-Hacid_dh_11, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  106 bits (266), Expect = 3e-27
 Identities = 71/228 (31%), Positives = 101/228 (44%), Gaps = 29/228 (12%)

Query: 17  RVVSTKPMPGTRW--INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           +V+   P        +  L+     VE+     T   +++  AL+ D  D ++  + +  
Sbjct: 1   KVLFLGPEFPDAEELLRALLPPAPGVEV----VTAAELDEEAALLAD-ADVLVPGMRKVI 55

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              L AA  R   +      VG + VD+ AA   GI V N PG   E+ AE A  L LA 
Sbjct: 56  DAELLAAAPRL--RLIQQPGVGLDGVDLEAATARGIPVANIPGGNAESVAEHAVMLMLAL 113

Query: 135 ARRIVEADEFMRAGLYDGW-LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI 193
            RR+ EAD  +RAG    W  P       L G+TVG++G G IG A AR +  GF + +I
Sbjct: 114 LRRLPEADRELRAG---RWGRPEGRPSRELSGKTVGIVGLGNIGRAVARRLR-GFGVEVI 169

Query: 194 YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC 241
           YYD               +F     E+     R   +DE+L E+DVV 
Sbjct: 170 YYD---------------RFRDPEAEEKDLGVRYVELDELLAESDVVS 202

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 311

>gnl|CDD|237436 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional

 Score =  107 bits (271), Expect = 6e-27
 Identities = 73/223 (32%), Positives = 104/223 (46%), Gaps = 55/223 (24%)

Query: 33  LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIG----QLTEDWGETLFAALS----- 83
           +++    VE+    KT L  E+++ +IGD  D +I     ++T +    +  A       
Sbjct: 16  ILKDAPGVEVDV--KTGLDKEELLEIIGD-YDALIVRSATKVTAE----VLEAAKNLKVI 68

Query: 84  -RAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEAD 142
            RAG        VG +NVDV AA + GI V N P   T + AE   +L LA AR I +A 
Sbjct: 69  GRAG--------VGVDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAH 120

Query: 143 EFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYA-RMMVEGFKMNLIYYDLY--- 198
             ++AG    W    F+G  L G+T+G+IG GRIGS  A R     F M +I YD Y   
Sbjct: 121 ASLKAGK---WERKKFMGVELYGKTLGIIGLGRIGSEVAKRAK--AFGMKVIAYDPYISP 175

Query: 199 -QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240
            +A +L              G + V      S+DE+L  AD +
Sbjct: 176 ERAAQL--------------GVELV------SLDELLARADFI 198

Length = 526

>gnl|CDD|240633 cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase

 Score =  101 bits (255), Expect = 1e-25
 Identities = 48/107 (44%), Positives = 65/107 (60%), Gaps = 5/107 (4%)

Query: 91  SNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY 150
           ++  VGY+ +D++AA   GI V NTPGVLT+  A+LA  L LA  RRI  AD F+RAG  
Sbjct: 69  ASFGVGYDGIDLDAARARGIRVTNTPGVLTDDVADLAVGLLLAVLRRIPAADRFVRAG-- 126

Query: 151 DGWLPNLF-VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD 196
             W    F +   + G+ VG++G GRIG A AR  +E F M + Y+ 
Sbjct: 127 -RWPKGAFPLTRKVSGKRVGIVGLGRIGRAIAR-RLEAFGMEIAYHG 171

Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 301

>gnl|CDD|240648 cd12171, 2-Hacid_dh_10, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  101 bits (254), Expect = 1e-25
 Identities = 49/146 (33%), Positives = 73/146 (50%), Gaps = 18/146 (12%)

Query: 96  GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP 155
           G  NVDV AA + GI V NTPG   E  AE    L LA  R I  A   ++ G +     
Sbjct: 77  GPENVDVEAATERGIPVLNTPGRNAEAVAEFTVGLMLAETRNIARAHAALKDGEWRKDYY 136

Query: 156 NL-FVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
           N    G  L+G+TVG++G G IG   A+ + + F   ++ YD         +V    + +
Sbjct: 137 NYDGYGPELRGKTVGIVGFGAIGRRVAKRL-KAFGAEVLVYD--------PYVDP--EKI 185

Query: 215 KANGEQPVTWKRASSMDEVLREADVV 240
           +A+G + V      S++E+L+ +DVV
Sbjct: 186 EADGVKKV------SLEELLKRSDVV 205

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|240659 cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score = 96.7 bits (242), Expect = 1e-23
 Identities = 52/146 (35%), Positives = 72/146 (49%), Gaps = 21/146 (14%)

Query: 96  GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP 155
           G+NNVD+ AA + GI V   P       AE A +L LA  R+I  A   +R G +   L 
Sbjct: 78  GFNNVDLKAAKELGITVVRVPAYSPYAVAEHAVALLLALNRKIHRAYNRVREGNFS--LD 135

Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 215
            L +G  L G+TVGVIG G+IG A+AR++  GF   ++ YD Y    L K    Y     
Sbjct: 136 GL-LGFDLHGKTVGVIGTGKIGQAFARILK-GFGCRVLAYDPYPNPELAKLGVEYV---- 189

Query: 216 ANGEQPVTWKRASSMDEVLREADVVC 241
                         +DE+L E+D++ 
Sbjct: 190 -------------DLDELLAESDIIS 202

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 328

>gnl|CDD|240620 cd01619, LDH_like, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score = 96.2 bits (240), Expect = 1e-23
 Identities = 57/211 (27%), Positives = 88/211 (41%), Gaps = 27/211 (12%)

Query: 30  INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKA 89
             +L      VEI T    +L+ ++   L     D ++   T+     L       G K 
Sbjct: 17  KEILKAGGVDVEIVT---YLLNDDETAELAKG-ADAILTAFTDKIDAELLDKA--PGLKF 70

Query: 90  FSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGL 149
            S  A GY+N+D++ A + GI V N P       AE   +L LA  R     DE  +   
Sbjct: 71  ISLRATGYDNIDLDYAKELGIGVTNVPEYSPNAVAEHTIALILALLRNRKYIDERDKNQD 130

Query: 150 YDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA 209
                  +  G  L+ QTVGV+G G+IG A A+   +GF M +I YD ++   LE     
Sbjct: 131 LQ-DAGVI--GRELEDQTVGVVGTGKIGRAVAQRA-KGFGMKVIAYDPFRNPELEDKGVK 186

Query: 210 YGQFLKANGEQPVTWKRASSMDEVLREADVV 240
           Y                  S++E+ + +D++
Sbjct: 187 Y-----------------VSLEELFKNSDII 200

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. D-HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. Similar to the structurally distinct L-HicDH, D-HicDH exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 323

>gnl|CDD|233358 TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase

 Score = 98.2 bits (245), Expect = 2e-23
 Identities = 73/239 (30%), Positives = 113/239 (47%), Gaps = 57/239 (23%)

Query: 17  RVVSTKPM-PGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVI----GQLT 71
           +V+   P+ P    I++L +    V++    +T LS E+++ +I D  D +I     ++T
Sbjct: 1   KVLIADPISPDG--IDILEDVGVEVDV----QTGLSREELLEIIPDY-DALIVRSATKVT 53

Query: 72  EDWGETLFAALS------RAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAE 125
           E+    + AA        RAG        VG +N+D+ AA   GI V N P   T + AE
Sbjct: 54  EE----VIAAAPKLKVIGRAG--------VGVDNIDIEAATARGILVVNAPTGNTISAAE 101

Query: 126 LAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMV 185
            A ++ LAAAR I +AD  ++ G    W    F+G  L G+T+GVIG GRIGS  A+   
Sbjct: 102 HALAMLLAAARNIPQADASLKEG---EWDRKAFMGTELYGKTLGVIGLGRIGSIVAK-RA 157

Query: 186 EGFKMNLIYYDLY----QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240
           + F M ++ YD Y    +A +L                     +    +DE+L  AD +
Sbjct: 158 KAFGMKVLAYDPYISPERAEQL-------------------GVELVDDLDELLARADFI 197

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli [Amino acid biosynthesis, Serine family]. Length = 525

>gnl|CDD|240645 cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-like dehydrogenases

 Score = 95.7 bits (239), Expect = 2e-23
 Identities = 55/176 (31%), Positives = 82/176 (46%), Gaps = 22/176 (12%)

Query: 65  GVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTA 124
           G  G   E+    L + L     K  ++   GY+ +DV+A  K GI V NTPG + E TA
Sbjct: 60  GETGPFDEE----LISPLP-PSLKIIAHAGAGYDQIDVDALTKRGIQVSNTPGAVDEATA 114

Query: 125 ELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMM 184
           + A  L L A R    A+   RAG + G+L      +  +G+T+G++G G IG A AR  
Sbjct: 115 DTALFLILGALRNFSRAERSARAGKWRGFLDLTLAHD-PRGKTLGILGLGGIGKAIARKA 173

Query: 185 VEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240
              F M +IY++  +     +   A                   S+DE+L ++DVV
Sbjct: 174 A-AFGMKIIYHNRSRLPEELEKALA---------------TYYVSLDELLAQSDVV 213

D-Mandelate dehydrogenase (D-ManDH), identified as an enzyme that interconverts benzoylformate and D-mandelate, is a D-2-hydroxyacid dehydrogenase family member that catalyzes the conversion of c3-branched 2-ketoacids. D-ManDH exhibits broad substrate specificities for 2-ketoacids with large hydrophobic side chains, particularly those with C3-branched side chains. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Glycerate dehydrogenase catalyzes the reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 321

>gnl|CDD|240651 cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score = 94.2 bits (235), Expect = 6e-23
 Identities = 55/167 (32%), Positives = 80/167 (47%), Gaps = 28/167 (16%)

Query: 81  ALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVE 140
           A++RAG         G NN+DV+AA+K GI V NTPG      AEL  ++ LA +R I++
Sbjct: 53  AIARAG--------AGVNNIDVDAASKRGIVVFNTPGANANAVAELVIAMMLALSRNIIQ 104

Query: 141 ADEFMRAGLYDG------WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
           A +++  G  D            FVG  L+G+T+GVIG G IG   A        M +I 
Sbjct: 105 AIKWVTNGDGDDISKGVEKGKKQFVGTELRGKTLGVIGLGNIGRLVAN-AALALGMKVIG 163

Query: 195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC 241
           YD Y +      ++   Q             R +S++E+L  AD + 
Sbjct: 164 YDPYLSVEAAWKLSVEVQ-------------RVTSLEELLATADYIT 197

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 305

>gnl|CDD|185307 PRK15409, PRK15409, bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

 Score = 94.0 bits (234), Expect = 1e-22
 Identities = 59/180 (32%), Positives = 91/180 (50%), Gaps = 23/180 (12%)

Query: 64  DGVIGQLTEDWGETLFAALSRAGGK--AFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTE 121
           +G++G      GE + AAL     K  A S ++VGY+N DV+A     I + +TP VLTE
Sbjct: 47  EGLLGS-----GEKVDAALLEKMPKLRAASTISVGYDNFDVDALTARKILLMHTPTVLTE 101

Query: 122 TTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYA 181
           T A+   +L L+ ARR+VE  E ++AG +   +   + G  +  +T+G++G GRIG A A
Sbjct: 102 TVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALA 161

Query: 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC 241
           +    GF M ++Y         E+   A                R   +D +L+E+D VC
Sbjct: 162 QRAHFGFNMPILYNARRHHKEAEERFNA----------------RYCDLDTLLQESDFVC 205

Length = 323

>gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

 Score = 90.2 bits (225), Expect = 1e-22
 Identities = 46/116 (39%), Positives = 58/116 (50%), Gaps = 21/116 (18%)

Query: 129 SLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF 188
           +L LA ARRI EAD  +RAG    W P+  +G  L G+TVG+IG GRIG A AR + + F
Sbjct: 2   ALLLALARRIPEADRQVRAG---RWRPDALLGRELSGKTVGIIGLGRIGRAVARRL-KAF 57

Query: 189 KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244
            M +I YD Y     E     Y                  S+DE+L E+DVV    
Sbjct: 58  GMKVIAYDRYPKAEAEALGARY-----------------VSLDELLAESDVVSLHL 96

This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175

>gnl|CDD|240663 cd12187, LDH_like_1, D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains

 Score = 87.3 bits (217), Expect = 3e-20
 Identities = 50/152 (32%), Positives = 76/152 (50%), Gaps = 32/152 (21%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADE------FMRAG 148
            G++++D+ A  + GIAV N P     T AE A +L LA +R++ EA E      F +AG
Sbjct: 72  TGFDHIDLEACRERGIAVCNVPDYGEATVAEHAFALLLALSRKLREAIERTRRGDFSQAG 131

Query: 149 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
           L          G  L G+T+GV+G GRIG   AR+   GF M ++ YD+      E+   
Sbjct: 132 L---------RGFELAGKTLGVVGTGRIGRRVARIAR-GFGMKVLAYDVVPD---EELAE 178

Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVV 240
             G              R  S++E+L+E+D++
Sbjct: 179 RLGF-------------RYVSLEELLQESDII 197

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|240639 cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 84.4 bits (210), Expect = 3e-19
 Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 26/156 (16%)

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY-- 150
           +A GYNNVD+ AA + GI V N PG  T++ A+   +L LA AR +   ++ ++AG +  
Sbjct: 72  LATGYNNVDLAAAKERGITVTNVPGYSTDSVAQHTFALLLALARLVAYHNDVVKAGEWQK 131

Query: 151 -DGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL-EKFVT 208
              +    +    L G+T+G+IG G IG A AR +   F M +++ +   A  L E +V 
Sbjct: 132 SPDFCFWDYPIIELAGKTLGIIGYGNIGQAVAR-IARAFGMKVLFAERKGAPPLREGYV- 189

Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244
                               S+DE+L ++DV+   C
Sbjct: 190 --------------------SLDELLAQSDVISLHC 205

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine yydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 307

>gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score = 83.8 bits (208), Expect = 4e-19
 Identities = 49/146 (33%), Positives = 71/146 (48%), Gaps = 22/146 (15%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
            G ++VD+ A  + GI V N  G  TE  AEL   L++   R IV  D  +RA    G  
Sbjct: 78  TGVDHVDLEACKERGITVSNAAGYSTEAVAELTIGLAIDLLRNIVPCDAAVRA----GGT 133

Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
               +G  L G+TVG++G G IG   AR + + F   ++ Y      R EK      +  
Sbjct: 134 KAGLIGRELAGKTVGIVGTGAIGLRVAR-LFKAFGCKVLAYS-----RSEK------EEA 181

Query: 215 KANGEQPVTWKRASSMDEVLREADVV 240
           KA G   + +    S+DE+L E+D+V
Sbjct: 182 KALG---IEYV---SLDELLAESDIV 201

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 315

>gnl|CDD|240646 cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases

 Score = 83.7 bits (208), Expect = 5e-19
 Identities = 50/153 (32%), Positives = 70/153 (45%), Gaps = 22/153 (14%)

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRA 147
           K      +   ++D+ AA + GI V  T G     TAEL  +L LA AR + E D  +RA
Sbjct: 71  KLLVTTGMRNASIDLAAAKERGIVVCGTGGG-PTATAELTWALILALARNLPEEDAALRA 129

Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
           G   GW   L  G  L G+T+G++G GRIG+  AR+  + F M                V
Sbjct: 130 G---GWQTTL--GTGLAGKTLGIVGLGRIGARVARIG-QAFGMR---------------V 168

Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240
            A+   L A        + A S +E+   +DVV
Sbjct: 169 IAWSSNLTAERAAAAGVEAAVSKEELFATSDVV 201

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 308

>gnl|CDD|240661 cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains

 Score = 83.0 bits (206), Expect = 1e-18
 Identities = 55/201 (27%), Positives = 86/201 (42%), Gaps = 33/201 (16%)

Query: 44  TQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVN 103
           T  K  L++E+     G     ++G         L   L  AG K  S  ++GY+++D++
Sbjct: 28  TLTKEPLTLENAHLAEGYDGISILG--KSKISAELLEKLKEAGVKYISTRSIGYDHIDLD 85

Query: 104 AANKYGIAVGNTP----GVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFV 159
           AA + GI V N       V     A+    L L A R+  +     RA + D  L  L  
Sbjct: 86  AAKELGIKVSNVTYSPNSV-----ADYTVMLMLMALRKYKQI--MKRAEVNDYSLGGL-Q 137

Query: 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE 219
           G  L+  TVGVIG GRIG A  + +  GF   ++ YD Y    ++K+   Y         
Sbjct: 138 GRELRNLTVGVIGTGRIGQAVIKNL-SGFGCKILAYDPYPNEEVKKYAE-Y--------- 186

Query: 220 QPVTWKRASSMDEVLREADVV 240
                     +D + +E+D++
Sbjct: 187 --------VDLDTLYKESDII 199

This group contains various putative dehydrogenases related to D-lactate dehydrogenase (LDH), (R)-2-hydroxyglutarate dehydrogenase (HGDH), and related enzymes, members of the 2-hydroxyacid dehydrogenases family. LDH catalyzes the interconversion of pyruvate and lactate, and HGDH catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Despite often low sequence identity within this 2-hydroxyacid dehydrogenase family, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 322

>gnl|CDD|240653 cd12176, PGDH_3, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score = 81.9 bits (203), Expect = 2e-18
 Identities = 46/146 (31%), Positives = 72/146 (49%), Gaps = 22/146 (15%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
           +G N VD++AA K GI V N P   T + AEL     +  ARR+ + +     G    W 
Sbjct: 73  IGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIIMLARRLPDRNAAAHRG---IWN 129

Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
            +    + ++G+T+G+IG G IGS  +  + E   M +I+YD+  A +L       G   
Sbjct: 130 KSATGSHEVRGKTLGIIGYGHIGSQLSV-LAEALGMRVIFYDI--AEKL-----PLG--- 178

Query: 215 KANGEQPVTWKRASSMDEVLREADVV 240
                     ++ SS++E+L EAD V
Sbjct: 179 --------NARQVSSLEELLAEADFV 196

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|181499 PRK08605, PRK08605, D-lactate dehydrogenase; Validated

 Score = 75.6 bits (186), Expect = 6e-16
 Identities = 40/178 (22%), Positives = 76/178 (42%), Gaps = 21/178 (11%)

Query: 64  DGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETT 123
           DG+         E ++  L+  G K  +  + G++  D+  A KY + + N P    E+ 
Sbjct: 47  DGLSLSQQIPLSEAIYKLLNELGIKQIAQRSAGFDTYDLELATKYNLIISNVPSYSPESI 106

Query: 124 AELAASLSLAAARRIVEADEFMRAGLYD-GWLPNLFVGNLLKGQTVGVIGAGRIGSAYAR 182
           AE   + ++   R   +    +R   +D  W P + +   +K   V VIG GRIG A A+
Sbjct: 107 AEFTVTQAINLVRHFNQIQTKVR--EHDFRWEPPI-LSRSIKDLKVAVIGTGRIGLAVAK 163

Query: 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240
           +  +G+  +++ YD +   +   +V                     +++E +  AD+V
Sbjct: 164 IFAKGYGSDVVAYDPFPNAKAATYVD-----------------YKDTIEEAVEGADIV 204

Length = 332

>gnl|CDD|240644 cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 74.1 bits (183), Expect = 2e-15
 Identities = 41/132 (31%), Positives = 56/132 (42%), Gaps = 18/132 (13%)

Query: 109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTV 168
           GI V +      E  AE   +  L A RRI       RAG  D   P    G  L G+TV
Sbjct: 95  GILVTSAADANAEPVAEFTLAAILLALRRIPRFAAAYRAG-RDWGWPTRRGGRGLYGRTV 153

Query: 169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS 228
           G++G GRIG A    ++  F + ++ YD         ++ A      A G          
Sbjct: 154 GIVGFGRIGRAVVE-LLRPFGLRVLVYD--------PYLPA--AEAAALGV------ELV 196

Query: 229 SMDEVLREADVV 240
           S+DE+L  +DVV
Sbjct: 197 SLDELLARSDVV 208

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 330

>gnl|CDD|240642 cd12165, 2-Hacid_dh_6, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 70.7 bits (174), Expect = 2e-14
 Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 22/153 (14%)

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152
            + G +++ +    + G+ V N  G  +   AE A +L LA A+RIVE D  +R G++ G
Sbjct: 67  PSAGVDHLPLERLPE-GVVVANNHG-NSPAVAEHALALILALAKRIVEYDNDLRRGIWHG 124

Query: 153 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
                     L+G+TVG++G G IG   AR++ + F M                V    +
Sbjct: 125 RAGEEPESKELRGKTVGILGYGHIGREIARLL-KAFGMR---------------VIGVSR 168

Query: 213 FLKANGEQPVTWKRASSM-DEVLREAD-VVCTL 243
             K   ++   +    S  DE L +AD VV  L
Sbjct: 169 SPKE--DEGADFVGTLSDLDEALEQADVVVVAL 199

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|240660 cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic domains

 Score = 70.4 bits (173), Expect = 4e-14
 Identities = 47/193 (24%), Positives = 81/193 (41%), Gaps = 27/193 (13%)

Query: 50  LSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYG 109
           L+ E++    G   D VI +      +         G K      VG+N++D+ AA + G
Sbjct: 34  LNDENVHLAKG--HDAVIVRGNCFADKENLEIYKEYGIKYVFTRTVGFNHIDLEAAKELG 91

Query: 110 IAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY--DGWLPNLFVGNLLKGQT 167
             +   P       AELA +L++  +R             +  D   P +F    ++  T
Sbjct: 92  FKMARVPSYSPNAIAELAFTLAMTLSRHTAYTASRTANKNFKVD---PFMF-SKEIRNST 147

Query: 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA 227
           VG+IG GRIG   A++  +G    +I YD+Y +   +  VT                   
Sbjct: 148 VGIIGTGRIGLTAAKLF-KGLGAKVIGYDIYPSDAAKDVVTFV----------------- 189

Query: 228 SSMDEVLREADVV 240
            S+DE+L+++D++
Sbjct: 190 -SLDELLKKSDII 201

(R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. HGDH is a member of the D-2-hydroxyacid NAD(+)-dependent dehydrogenase family; these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 330

>gnl|CDD|236985 PRK11790, PRK11790, D-3-phosphoglycerate dehydrogenase; Provisional

 Score = 67.5 bits (166), Expect = 5e-13
 Identities = 60/201 (29%), Positives = 91/201 (45%), Gaps = 39/201 (19%)

Query: 47  KTILSVEDIIALIGDKCDGVIG-----QLTEDWGETLFAALSR--AGGKAFSNMAVGYNN 99
           K  L  E++I  I D     IG     QLTE+    + AA  +  A G  F    +G N 
Sbjct: 39  KGALDEEELIEAIKDA--HFIGIRSRTQLTEE----VLAAAEKLVAIG-CFC---IGTNQ 88

Query: 100 VDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFV 159
           VD++AA K GI V N P   T + AEL     +   R I E +     G   GW  +   
Sbjct: 89  VDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRG---GWNKSAAG 145

Query: 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE 219
              ++G+T+G++G G IG+  + ++ E   M + +YD+    +L       G     N  
Sbjct: 146 SFEVRGKTLGIVGYGHIGTQLS-VLAESLGMRVYFYDI--EDKL-----PLG-----NAR 192

Query: 220 QPVTWKRASSMDEVLREADVV 240
           Q        S++E+L ++DVV
Sbjct: 193 Q------VGSLEELLAQSDVV 207

Length = 409

>gnl|CDD|181414 PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; Provisional

 Score = 65.4 bits (160), Expect = 1e-12
 Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 8/108 (7%)

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152
            A G NNVD+  A K GIAV N  G  TE+ A+   ++ L+   RI   D ++++G Y  
Sbjct: 70  TATGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSE 129

Query: 153 WLPNLFVG-----NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 195
               +F         +KG+  G+IG G IG   A+ + + F   ++YY
Sbjct: 130 --SPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAK-IAQAFGAKVVYY 174

Length = 311

>gnl|CDD|215501 PLN02928, PLN02928, oxidoreductase family protein

 Score = 61.6 bits (150), Expect = 4e-11
 Identities = 43/156 (27%), Positives = 63/156 (40%), Gaps = 18/156 (11%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLT---ETTAELAASLSLAAARRIVEADEFMRAGLYD 151
           VG   VDV+AA K+GI V   P   T    + AE+A  L L   R+  E    ++A    
Sbjct: 91  VGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLG 150

Query: 152 GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATR---LEKFVT 208
              P   +G+ L G+TV ++G G IG   A+ +   F + L+      ATR     +   
Sbjct: 151 E--P---IGDTLFGKTVFILGYGAIGIELAKRL-RPFGVKLL------ATRRSWTSEPED 198

Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244
                     +          + E   EAD+V   C
Sbjct: 199 GLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCC 234

Length = 347

>gnl|CDD|180588 PRK06487, PRK06487, glycerate dehydrogenase; Provisional

 Score = 60.5 bits (147), Expect = 8e-11
 Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 12/107 (11%)

Query: 94  AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW 153
           A G NNVD+ AA + GI V N  G  T + A+   +L LA A R+ +  + + AG    W
Sbjct: 74  ATGTNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAG---RW 130

Query: 154 -------LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI 193
                  L + F    L+G+T+G++G G +G A AR + E F M ++
Sbjct: 131 QQSSQFCLLD-FPIVELEGKTLGLLGHGELGGAVAR-LAEAFGMRVL 175

Length = 317

>gnl|CDD|240656 cd12179, 2-Hacid_dh_14, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score = 60.4 bits (147), Expect = 8e-11
 Identities = 43/145 (29%), Positives = 68/145 (46%), Gaps = 23/145 (15%)

Query: 96  GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP 155
           G  N+D+  A + GI + N P    +   E A  + LA   ++  AD+ +R G+   W  
Sbjct: 72  GLENIDLEYAKEKGIELFNAPEGNRDAVGEHALGMLLALFNKLNRADQEVRNGI---WDR 128

Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 215
               G  L G+TVG+IG G +G A+A+ +  GF   +I YD Y+             F  
Sbjct: 129 EGNRGVELMGKTVGIIGYGNMGKAFAKRL-SGFGCKVIAYDKYK------------NFGD 175

Query: 216 ANGEQPVTWKRASSMDEVLREADVV 240
           A  EQ        S++ + +EAD++
Sbjct: 176 AYAEQ-------VSLETLFKEADIL 193

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|183550 PRK12480, PRK12480, D-lactate dehydrogenase; Provisional

 Score = 59.9 bits (145), Expect = 1e-10
 Identities = 54/204 (26%), Positives = 93/204 (45%), Gaps = 30/204 (14%)

Query: 40  VEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE---TLFAALSRAGGKAFSNMAVG 96
           VE+ T K+ +LS   +     D+     G  T  +G+    ++  L   G K  +    G
Sbjct: 26  VEVTTSKE-LLSSATV-----DQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTAG 79

Query: 97  YNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPN 156
           ++  D++ A K+ I + N P    ET AE + S++L   RR  + +  ++A  +      
Sbjct: 80  FDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAE- 138

Query: 157 LFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA 216
             +   +K  TV +IG GRIG+A A++   GF   +  YD Y    L+        FL  
Sbjct: 139 -IMSKPVKNMTVAIIGTGRIGAATAKIYA-GFGATITAYDAYPNKDLD--------FL-- 186

Query: 217 NGEQPVTWKRASSMDEVLREADVV 240
                 T+K   S+ E +++AD++
Sbjct: 187 ------TYK--DSVKEAIKDADII 202

Length = 330

>gnl|CDD|240627 cd05302, FDH, NAD-dependent Formate Dehydrogenase (FDH)

 Score = 58.1 bits (141), Expect = 6e-10
 Identities = 43/148 (29%), Positives = 68/148 (45%), Gaps = 20/148 (13%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
           +G ++VD+ AAN  GI V    G    + AE    + L   R  V   E    G   GW 
Sbjct: 93  IGSDHVDLQAANDRGITVAEVTGSNVVSVAEHVVMMILILVRNYVPGHEQAIEG---GWN 149

Query: 155 PNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
               V     L+G+TVG +GAGRIG    R + + F ++L+YYD ++             
Sbjct: 150 VADVVKRAYDLEGKTVGTVGAGRIGLRVLRRL-KPFDVHLLYYDRHR------------- 195

Query: 213 FLKANGEQPVTWKRASSMDEVLREADVV 240
            L    E+ +   R + +++++ + DVV
Sbjct: 196 -LPEEVEKELGLTRHADLEDMVSKCDVV 222

NAD-dependent formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of a formate anion to carbon dioxide coupled with the reduction of NAD+ to NADH. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family have 2 highly similar subdomains of the alpha/beta form, with NAD binding occurring in the cleft between subdomains. NAD contacts are primarily to the Rossmann-fold NAD-binding domain which is inserted within the linear sequence of the more diverse flavodoxin-like catalytic subdomain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production from C1 compounds such as methanol, and in the stress responses of plants. NAD-dependent FDH is useful in cofactor regeneration in asymmetrical biocatalytic reduction processes, where FDH irreversibly oxidizes formate to carbon dioxide, while reducing the oxidized form of the cofactor to the reduced form. Length = 348

>gnl|CDD|181041 PRK07574, PRK07574, formate dehydrogenase; Provisional

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 46/154 (29%), Positives = 71/154 (46%), Gaps = 24/154 (15%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
           +G ++VD+ AA+++GI V    G  + + AE    + LA  R    +      G   GW 
Sbjct: 123 IGSDHVDLQAASEHGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEG---GW- 178

Query: 155 PNLF-VGNL---LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY 210
            N+    +    L+G TVG++GAGRIG A  R + + F + L Y D +   RL + V   
Sbjct: 179 -NIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRL-KPFDVKLHYTDRH---RLPEEVEQ- 232

Query: 211 GQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244
                   E  +T+    S D ++   DVV   C
Sbjct: 233 --------ELGLTYH--VSFDSLVSVCDVVTIHC 256

Length = 385

>gnl|CDD|235890 PRK06932, PRK06932, glycerate dehydrogenase; Provisional

 Score = 51.7 bits (124), Expect = 7e-08
 Identities = 40/160 (25%), Positives = 64/160 (40%), Gaps = 36/160 (22%)

Query: 94  AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW 153
           A G NNVD+ AA + GIAV N  G  + T  E    +  A    ++    + R  L D W
Sbjct: 73  ATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFALKHSLMG---WYRDQLSDRW 129

Query: 154 LPNLFVGNL---------LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE 204
                             ++G T+GV G G +G+   R + +   M ++Y +   A+   
Sbjct: 130 ATC---KQFCYFDYPITDVRGSTLGVFGKGCLGTEVGR-LAQALGMKVLYAEHKGASVCR 185

Query: 205 KFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244
           +  T +                    +EVL++AD+V   C
Sbjct: 186 EGYTPF--------------------EEVLKQADIVTLHC 205

Length = 314

>gnl|CDD|240635 cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains

 Score = 49.5 bits (119), Expect = 4e-07
 Identities = 36/147 (24%), Positives = 60/147 (40%), Gaps = 43/147 (29%)

Query: 96  GYNNVDVNAANKYGIAVGNTPGVLTETTAE-LAASLSLAAARRIVEADEFMRAGLYDGWL 154
           G +++D +   + GI   N PG    + AE + ++L + A R+                 
Sbjct: 67  GTDHIDTDYLKERGIGFANAPGCNANSVAEYVLSALLVLAQRQ----------------- 109

Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
                G  LKG+TVG++G G +GS  AR  +E   MN++  D  +A              
Sbjct: 110 -----GFSLKGKTVGIVGVGNVGSRLAR-RLEALGMNVLLCDPPRAEAEGDPGFV----- 158

Query: 215 KANGEQPVTWKRASSMDEVLREADVVC 241
                         S++E+L EAD++ 
Sbjct: 159 --------------SLEELLAEADIIT 171

D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 343

>gnl|CDD|240643 cd12166, 2-Hacid_dh_7, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 45.7 bits (109), Expect = 7e-06
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 8/81 (9%)

Query: 109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG-WLPNLFVGNLLKGQT 167
           G+ + N  GV   +TAELA +L LA+ R +         G ++    P+      L  + 
Sbjct: 81  GVTLCNARGVHDASTAELAVALILASLRGLPRFVRAQARGRWEPRRTPS------LADRR 134

Query: 168 VGVIGAGRIGSAYARMMVEGF 188
           V ++G G IG A  R +   F
Sbjct: 135 VLIVGYGSIGRAIERRL-APF 154

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 300

>gnl|CDD|240636 cd12159, 2-Hacid_dh_2, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 45.7 bits (109), Expect = 8e-06
 Identities = 37/131 (28%), Positives = 51/131 (38%), Gaps = 21/131 (16%)

Query: 114 NTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA 173
           N  G   ET AE A +L LA  R++       RA  +D       +  LL+G TV ++GA
Sbjct: 78  NAAGAYAETVAEHALALLLAGLRQLPA---RARATTWDPAEE-DDLVTLLRGSTVAIVGA 133

Query: 174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV 233
           G IG A   ++   F   +I             V   G+     G        A  +DEV
Sbjct: 134 GGIGRALIPLLA-PFGAKVIA------------VNRSGR--PVEGADETV--PADRLDEV 176

Query: 234 LREADVVCTLC 244
             +AD V    
Sbjct: 177 WPDADHVVLAA 187

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 303

>gnl|CDD|235800 PRK06436, PRK06436, glycerate dehydrogenase; Provisional

 Score = 45.3 bits (107), Expect = 9e-06
 Identities = 29/108 (26%), Positives = 56/108 (51%), Gaps = 7/108 (6%)

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRA 147
           K   +++ G +++DV+   +  + + +  G  + + AE A +L LA A+ I E +  M+ 
Sbjct: 51  KMIQSLSAGVDHIDVSGIPE-NVVLCSNAGAYSISVAEHAFALLLAWAKNICENNYNMKN 109

Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 195
           G +    P      LL  +++G++G G IG   A ++ + F MN+  Y
Sbjct: 110 GNFKQ-SPT----KLLYNKSLGILGYGGIGRRVA-LLAKAFGMNIYAY 151

Length = 303

>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase

 Score = 44.4 bits (106), Expect = 2e-05
 Identities = 35/155 (22%), Positives = 53/155 (34%), Gaps = 27/155 (17%)

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152
            + G + +      +  + + N  G+     AE      LA AR++              
Sbjct: 66  TSAGVDALLFPELLERDVVLTNARGIFGPPIAEYVLGYMLAFARKLPRYARNQAERR--- 122

Query: 153 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY-- 210
           W     V   L G+TV ++G G IG   AR   + F M                V     
Sbjct: 123 WQRRGPVR-ELAGKTVLIVGLGDIGREIARRA-KAFGMR---------------VIGVRR 165

Query: 211 -GQFLKANGEQPVTWKRASSMDEVLREAD-VVCTL 243
            G+      ++  T      +DE+L EAD VV  L
Sbjct: 166 SGRPAPPVVDEVYT---PDELDELLPEADYVVNAL 197

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313

>gnl|CDD|178684 PLN03139, PLN03139, formate dehydrogenase; Provisional

 Score = 42.5 bits (100), Expect = 9e-05
 Identities = 44/157 (28%), Positives = 65/157 (41%), Gaps = 38/157 (24%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRI------VEADEFMRAG 148
           +G +++D+ AA   G+ V    G    + AE      L   R        V + E+  AG
Sbjct: 130 IGSDHIDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAG 189

Query: 149 L----YDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD-LYQATRL 203
           +    YD           L+G+TVG +GAGRIG    + + + F  NL+Y+D L     L
Sbjct: 190 IAYRAYD-----------LEGKTVGTVGAGRIGRLLLQRL-KPFNCNLLYHDRLKMDPEL 237

Query: 204 EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240
           EK   A               K    +D +L + DVV
Sbjct: 238 EKETGA---------------KFEEDLDAMLPKCDVV 259

Length = 386

>gnl|CDD|240632 cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family

 Score = 38.7 bits (91), Expect = 0.001
 Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 5/101 (4%)

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152
            + G + + +    K GI + N  G+ +   AE      L   + + +A +  +      
Sbjct: 67  YSAGVDYLPLEYIKKKGILLTNNSGIHSIPIAEWIVGYILEIYKGLKKAYKNQKEKK--- 123

Query: 153 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI 193
           W  +  +  L  G+T+  +G G IG   A+ + + F M +I
Sbjct: 124 WKMDSSLLEL-YGKTILFLGTGSIGQEIAKRL-KAFGMKVI 162

Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|240631 cd12154, FDH_GDH_like, Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases

 Score = 38.4 bits (89), Expect = 0.002
 Identities = 35/167 (20%), Positives = 63/167 (37%), Gaps = 29/167 (17%)

Query: 80  AALSRAGGKAFSNMAVGYNNVDVNAAN-KYGIAVGNTPGVLTETT---AELAASLSLAAA 135
           A + + G +      +G ++ D+  A  + G+      GV        +  A  LS+   
Sbjct: 81  ALIQKLGDRLLFTYTIGADHRDLTEALARAGLTAIAVEGVELPLLTSNSIGAGELSVQFI 140

Query: 136 RRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 195
            R +E  +  R G              + G+TV V+GAG +G   A+M+  G    ++  
Sbjct: 141 ARFLEVQQPGRLGGAPD----------VAGKTVVVVGAGVVGKEAAQMLR-GLGAQVLIT 189

Query: 196 DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT 242
           D+      +               + +  K    ++E L EADV+ T
Sbjct: 190 DINVEALEQ--------------LEELGGKNVEELEEALAEADVIVT 222

The formate/glycerate dehydrogenase like family contains a diverse group of enzymes such as formate dehydrogenase (FDH), glycerate dehydrogenase (GDH), D-lactate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine hydrolase, that share a common 2-domain structure. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar domains of the alpha/beta Rossmann fold NAD+ binding form. The NAD(P) binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD(P) is bound, primarily to the C-terminal portion of the 2nd (internal) domain. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of a hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. Length = 310

>gnl|CDD|188459 TIGR03944, dehyd_SbnB_fam, 2,3-diaminopropionate biosynthesis protein SbnB

 Score = 37.6 bits (88), Expect = 0.004
 Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 15/83 (18%)

Query: 166 QTVGVIGAGRIGSAYARMMVEGF----KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP 221
             VG+IG G I     R ++       ++ L  YDL  A R E F        +  G   
Sbjct: 133 TRVGIIGCGPIAREILRFLLALGPEIRRVVL--YDLDPA-RAEAFA----ARCQELGPGK 185

Query: 222 VTWKRASSMDEVLREADVV--CT 242
           VT   A+S +  LR+AD+V   T
Sbjct: 186 VT--VAASAEAALRQADLVVTAT 206

Members of this protein family are probable NAD-dependent dehydrogenases related to the alanine dehydrogenase of Archaeoglobus fulgidus (see TIGR02371, PDB structure 1OMO and PMID:15313611) and more distantly to ornithine cyclodeaminase. Members include the staphylobactin biosynthesis protein SbnB and tend to occur in contexts suggesting non-ribosomal peptide synthesis, always adjacent to (occasionally fused with) a pyridoxal phosphate-dependent enzyme, SbnA. The pair appears to provide 2,3-diaminopropionate for biosynthesis of siderophores or other secondary metabolites [Cellular processes, Biosynthesis of natural products]. Length = 327

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	244
PLN02306	386	hydroxypyruvate reductase	100.0
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	100.0
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	100.0
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	100.0
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	100.0
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
PRK13243	333	glyoxylate reductase; Reviewed	100.0
PRK06487	317	glycerate dehydrogenase; Provisional	100.0
PRK06932	314	glycerate dehydrogenase; Provisional	100.0
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	100.0
PLN03139	386	formate dehydrogenase; Provisional	100.0
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	100.0
PRK07574	385	formate dehydrogenase; Provisional	100.0
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
PRK08605	332	D-lactate dehydrogenase; Validated	100.0
PLN02928	347	oxidoreductase family protein	100.0
PRK12480	330	D-lactate dehydrogenase; Provisional	100.0
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	100.0
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	100.0
PRK06436	303	glycerate dehydrogenase; Provisional	99.98
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	99.98
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	99.97
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	99.86
KOG0067	435	consensus Transcription factor CtBP [Transcription	99.8
PF00389	133	2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydr	99.78
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	99.77
PRK08306	296	dipicolinate synthase subunit A; Reviewed	99.59
PTZ00075	476	Adenosylhomocysteinase; Provisional	99.55
PRK13403	335	ketol-acid reductoisomerase; Provisional	99.09
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	98.88
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	98.78
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	98.76
PLN02494	477	adenosylhomocysteinase	98.74
PRK05479	330	ketol-acid reductoisomerase; Provisional	98.56
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	98.52
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	98.47
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	98.39
PLN02712	667	arogenate dehydrogenase	98.39
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.38
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	98.37
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.3
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.27
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	98.24
PLN02256	304	arogenate dehydrogenase	98.21
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.14
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.11
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	98.08
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.08
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.07
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	98.06
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.05
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.05
PLN02712	667	arogenate dehydrogenase	98.03
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	97.98
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	97.97
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	97.91
PRK06545	359	prephenate dehydrogenase; Validated	97.9
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	97.87
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.86
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	97.84
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	97.82
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.82
PRK05225	487	ketol-acid reductoisomerase; Validated	97.8
PRK07417	279	arogenate dehydrogenase; Reviewed	97.77
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	97.76
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	97.73
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	97.72
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	97.72
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	97.72
PRK15059	292	tartronate semialdehyde reductase; Provisional	97.7
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	97.7
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	97.7
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	97.7
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	97.68
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	97.67
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	97.65
PLN02688	266	pyrroline-5-carboxylate reductase	97.64
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	97.64
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.61
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	97.61
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.61
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.58
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	97.58
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	97.58
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	97.57
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.55
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.54
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	97.54
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.51
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.51
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.51
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	97.5
PRK08655	437	prephenate dehydrogenase; Provisional	97.49
PLN00203	519	glutamyl-tRNA reductase	97.48
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	97.47
PRK13304	265	L-aspartate dehydrogenase; Reviewed	97.47
PLN02858	1378	fructose-bisphosphate aldolase	97.46
KOG1370	434	consensus S-adenosylhomocysteine hydrolase [Coenzy	97.45
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	97.44
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.43
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	97.43
PRK07680	273	late competence protein ComER; Validated	97.41
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.4
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	97.38
PRK08507	275	prephenate dehydrogenase; Validated	97.37
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	97.37
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	97.37
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.34
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	97.34
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.34
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	97.33
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.32
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	97.32
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.32
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.31
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	97.3
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	97.3
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	97.3
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.29
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.28
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.27
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	97.27
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	97.27
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.26
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.25
PTZ00431	260	pyrroline carboxylate reductase; Provisional	97.25
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	97.25
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.23
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	97.23
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.23
KOG0409	327	consensus Predicted dehydrogenase [General functio	97.22
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.21
PLN02858	1378	fructose-bisphosphate aldolase	97.21
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	97.21
PRK07340	304	ornithine cyclodeaminase; Validated	97.21
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	97.18
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	97.18
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	97.17
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	97.17
PRK08618	325	ornithine cyclodeaminase; Validated	97.17
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.17
PRK06141	314	ornithine cyclodeaminase; Validated	97.16
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.16
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.14
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.13
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.13
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	97.13
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.12
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.11
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	97.1
PRK12548	289	shikimate 5-dehydrogenase; Provisional	97.1
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	97.08
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.08
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	97.08
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	97.07
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	97.05
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.05
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	97.05
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	97.04
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.04
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.03
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.03
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	97.01
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	97.01
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.0
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	97.0
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	96.98
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	96.96
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.96
PRK14982	340	acyl-ACP reductase; Provisional	96.95
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	96.94
PRK06407	301	ornithine cyclodeaminase; Provisional	96.92
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	96.91
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.91
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	96.91
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.91
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	96.9
PRK08291	330	ectoine utilization protein EutC; Validated	96.81
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	96.79
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	96.76
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	96.76
PRK06823	315	ornithine cyclodeaminase; Validated	96.72
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.72
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.71
PRK07589	346	ornithine cyclodeaminase; Validated	96.69
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	96.69
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	96.69
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	96.68
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	96.67
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.67
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	96.64
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	96.63
PLN02477	410	glutamate dehydrogenase	96.61
PRK00048	257	dihydrodipicolinate reductase; Provisional	96.6
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	96.6
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	96.58
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	96.56
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	96.54
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	96.52
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	96.51
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	96.5
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	96.47
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	96.42
PTZ00117	319	malate dehydrogenase; Provisional	96.38
PRK04284	332	ornithine carbamoyltransferase; Provisional	96.37
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	96.37
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.35
PRK06046	326	alanine dehydrogenase; Validated	96.34
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	96.33
PF00185	158	OTCace: Aspartate/ornithine carbamoyltransferase,	96.32
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	96.31
PRK02102	331	ornithine carbamoyltransferase; Validated	96.31
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	96.28
PRK03515	336	ornithine carbamoyltransferase subunit I; Provisio	96.27
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	96.22
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	96.22
PTZ00082	321	L-lactate dehydrogenase; Provisional	96.21
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	96.21
PRK12562	334	ornithine carbamoyltransferase subunit F; Provisio	96.21
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.2
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	96.19
PRK14031	444	glutamate dehydrogenase; Provisional	96.18
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	96.18
TIGR03316	357	ygeW probable carbamoyltransferase YgeW. Members o	96.17
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	96.16
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	96.14
PRK13303	265	L-aspartate dehydrogenase; Provisional	96.12
PRK00779	304	ornithine carbamoyltransferase; Provisional	96.11
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.11
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.08
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.08
PRK09414	445	glutamate dehydrogenase; Provisional	96.07
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	96.05
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	96.05
PLN02353	473	probable UDP-glucose 6-dehydrogenase	96.04
TIGR00658	304	orni_carb_tr ornithine carbamoyltransferase. Most	96.04
PRK04523	335	N-acetylornithine carbamoyltransferase; Reviewed	96.04
PRK06223	307	malate dehydrogenase; Reviewed	96.03
PRK01713	334	ornithine carbamoyltransferase; Provisional	96.03
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	96.02
TIGR00670	301	asp_carb_tr aspartate carbamoyltransferase. Ornith	95.99
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	95.99
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.98
PRK06199	379	ornithine cyclodeaminase; Validated	95.96
TIGR01161	352	purK phosphoribosylaminoimidazole carboxylase, Pur	95.91
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	95.87
PRK11891	429	aspartate carbamoyltransferase; Provisional	95.85
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.81
PLN02948	577	phosphoribosylaminoimidazole carboxylase	95.8
PF00044	151	Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase,	95.8
COG0569	225	TrkA K+ transport systems, NAD-binding component [	95.79
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.77
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	95.76
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	95.73
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.72
PRK05562	223	precorrin-2 dehydrogenase; Provisional	95.64
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	95.62
PRK11579	346	putative oxidoreductase; Provisional	95.61
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	95.58
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.57
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	95.56
TIGR00036	266	dapB dihydrodipicolinate reductase.	95.53
COG0057	335	GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt	95.51
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	95.51
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	95.48
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	95.47
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	95.46
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.45
PRK09496	453	trkA potassium transporter peripheral membrane com	95.43
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	95.42
PLN02527	306	aspartate carbamoyltransferase	95.36
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	95.35
PRK07806	248	short chain dehydrogenase; Provisional	95.35
PRK14030	445	glutamate dehydrogenase; Provisional	95.35
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.34
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	95.33
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	95.32
PRK02255	338	putrescine carbamoyltransferase; Provisional	95.31
PRK08818	370	prephenate dehydrogenase; Provisional	95.26
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	95.25
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.23
PRK06114	254	short chain dehydrogenase; Provisional	95.21
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	95.17
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	95.17
PRK07576	264	short chain dehydrogenase; Provisional	95.12
COG0673	342	MviM Predicted dehydrogenases and related proteins	95.05
PLN02272	421	glyceraldehyde-3-phosphate dehydrogenase	95.05
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	95.04
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	95.02
PRK07523	255	gluconate 5-dehydrogenase; Provisional	95.02
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	95.01
COG0540	316	PyrB Aspartate carbamoyltransferase, catalytic cha	94.93
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	94.91
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.89
PLN02214	342	cinnamoyl-CoA reductase	94.89
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	94.89
PRK07326	237	short chain dehydrogenase; Provisional	94.87
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	94.87
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	94.87
PRK07200	395	aspartate/ornithine carbamoyltransferase family pr	94.86
PF04016	147	DUF364: Domain of unknown function (DUF364); Inter	94.85
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	94.82
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	94.79
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	94.78
PRK06172	253	short chain dehydrogenase; Provisional	94.78
PLN02602	350	lactate dehydrogenase	94.76
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	94.75
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	94.74
PLN00106	323	malate dehydrogenase	94.74
PRK06949	258	short chain dehydrogenase; Provisional	94.73
PRK10637	457	cysG siroheme synthase; Provisional	94.62
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	94.58
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	94.55
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	94.54
PRK08589	272	short chain dehydrogenase; Validated	94.51
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	94.51
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.48
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.48
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	94.46
PLN02342	348	ornithine carbamoyltransferase	94.44
PRK05866	293	short chain dehydrogenase; Provisional	94.42
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	94.41
PLN03209	576	translocon at the inner envelope of chloroplast su	94.39
PRK07890	258	short chain dehydrogenase; Provisional	94.39
PF03720	106	UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen	94.37
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	94.36
PRK09189	240	uroporphyrinogen-III synthase; Validated	94.35
PRK12937	245	short chain dehydrogenase; Provisional	94.32
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	94.31
PRK14804	311	ornithine carbamoyltransferase; Provisional	94.3
PRK05867	253	short chain dehydrogenase; Provisional	94.3
PTZ00325	321	malate dehydrogenase; Provisional	94.26
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	94.25
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.24
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	94.22
PRK08300	302	acetaldehyde dehydrogenase; Validated	94.21
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	94.21
PRK08628	258	short chain dehydrogenase; Provisional	94.2
PRK00856	305	pyrB aspartate carbamoyltransferase catalytic subu	94.19
PRK12935	247	acetoacetyl-CoA reductase; Provisional	94.16
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	94.14
PRK05086	312	malate dehydrogenase; Provisional	94.11
PRK05876	275	short chain dehydrogenase; Provisional	94.1
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	94.04
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	94.03
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	93.98
PRK06523	260	short chain dehydrogenase; Provisional	93.98
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	93.97
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	93.93
PRK06701	290	short chain dehydrogenase; Provisional	93.92
PRK12939	250	short chain dehydrogenase; Provisional	93.9
PRK06057	255	short chain dehydrogenase; Provisional	93.89
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.89
COG2344	211	AT-rich DNA-binding protein [General function pred	93.85
PRK12367	245	short chain dehydrogenase; Provisional	93.8
PRK07239	381	bifunctional uroporphyrinogen-III synthetase/respo	93.79
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	93.78
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	93.78
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	93.76
PRK12938	246	acetyacetyl-CoA reductase; Provisional	93.74
PRK08192	338	aspartate carbamoyltransferase; Provisional	93.72
PRK09186	256	flagellin modification protein A; Provisional	93.72
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.71
PRK06270	341	homoserine dehydrogenase; Provisional	93.66
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	93.56
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	93.56
PRK07478	254	short chain dehydrogenase; Provisional	93.55
CHL00194	317	ycf39 Ycf39; Provisional	93.55
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	93.54
PRK15076	431	alpha-galactosidase; Provisional	93.54
PRK08862	227	short chain dehydrogenase; Provisional	93.53
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	93.52
PRK04148	134	hypothetical protein; Provisional	93.48
PRK07035	252	short chain dehydrogenase; Provisional	93.42
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	93.41
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	93.37
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	93.36
PLN02353	473	probable UDP-glucose 6-dehydrogenase	93.35
PRK06124	256	gluconate 5-dehydrogenase; Provisional	93.31
PLN02206	442	UDP-glucuronate decarboxylase	93.28
PRK07774	250	short chain dehydrogenase; Provisional	93.27
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	93.25
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	93.24
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	93.23
TIGR01142	380	purT phosphoribosylglycinamide formyltransferase 2	93.22
PRK08085	254	gluconate 5-dehydrogenase; Provisional	93.22
PRK06194	287	hypothetical protein; Provisional	93.19
PRK08339	263	short chain dehydrogenase; Provisional	93.17
PRK13814	310	pyrB aspartate carbamoyltransferase catalytic subu	93.16
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	93.16
PRK05872	296	short chain dehydrogenase; Provisional	93.15
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	93.14
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	93.13
PLN02427	386	UDP-apiose/xylose synthase	93.12
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	93.12
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	93.12
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	93.09
PRK08936	261	glucose-1-dehydrogenase; Provisional	93.09
PRK12742	237	oxidoreductase; Provisional	93.09
PRK06125	259	short chain dehydrogenase; Provisional	93.06
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	93.05
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	93.04
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	93.04
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	93.02
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	93.02
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	93.02
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	92.98
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	92.98
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.98
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	92.94
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	92.92
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	92.9
PLN02896	353	cinnamyl-alcohol dehydrogenase	92.9
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	92.87
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	92.87
PRK07060	245	short chain dehydrogenase; Provisional	92.84
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	92.83
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.83
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	92.83
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	92.8
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	92.8
PRK06398	258	aldose dehydrogenase; Validated	92.8
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	92.79
PRK08303	305	short chain dehydrogenase; Provisional	92.76
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	92.71
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	92.71
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	92.69
PLN02695	370	GDP-D-mannose-3',5'-epimerase	92.66
PRK03659	601	glutathione-regulated potassium-efflux system prot	92.65
PRK11730	715	fadB multifunctional fatty acid oxidation complex	92.62
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	92.56
PRK07454	241	short chain dehydrogenase; Provisional	92.56
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.55
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.55
PRK06139	330	short chain dehydrogenase; Provisional	92.54
PRK05928	249	hemD uroporphyrinogen-III synthase; Reviewed	92.53
PRK07825	273	short chain dehydrogenase; Provisional	92.53
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	92.51
PRK10206	344	putative oxidoreductase; Provisional	92.51
PRK08277	278	D-mannonate oxidoreductase; Provisional	92.5
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	92.49
PRK06196	315	oxidoreductase; Provisional	92.49
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	92.45
PRK07856	252	short chain dehydrogenase; Provisional	92.43
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.41
PRK05875	276	short chain dehydrogenase; Provisional	92.38
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	92.36
PRK06182	273	short chain dehydrogenase; Validated	92.35
PRK08213	259	gluconate 5-dehydrogenase; Provisional	92.34
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	92.34
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	92.32
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.31
PRK06198	260	short chain dehydrogenase; Provisional	92.22
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	92.21
PRK07814	263	short chain dehydrogenase; Provisional	92.19
PRK09291	257	short chain dehydrogenase; Provisional	92.14
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	92.14
PRK08324	681	short chain dehydrogenase; Validated	92.11
PRK06138	252	short chain dehydrogenase; Provisional	92.11
PRK08177	225	short chain dehydrogenase; Provisional	92.11
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	92.1
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	92.08
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	92.01
PRK09496	453	trkA potassium transporter peripheral membrane com	91.98
PRK14805	302	ornithine carbamoyltransferase; Provisional	91.97
PRK12859	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	91.95
PRK09242	257	tropinone reductase; Provisional	91.87
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	91.85
PRK07102	243	short chain dehydrogenase; Provisional	91.84
PRK03562	621	glutathione-regulated potassium-efflux system prot	91.83
PRK06392	326	homoserine dehydrogenase; Provisional	91.82
PRK06128	300	oxidoreductase; Provisional	91.78
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	91.78
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	91.72
PRK07453	322	protochlorophyllide oxidoreductase; Validated	91.71
PRK12828	239	short chain dehydrogenase; Provisional	91.69
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	91.69
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	91.68
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	91.67
PRK06349	426	homoserine dehydrogenase; Provisional	91.67
PRK06181	263	short chain dehydrogenase; Provisional	91.67
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	91.66
TIGR01829	242	AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy	91.64
PRK08226	263	short chain dehydrogenase; Provisional	91.64
PRK06841	255	short chain dehydrogenase; Provisional	91.61
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	91.6
PLN02240	352	UDP-glucose 4-epimerase	91.59
PLN00198	338	anthocyanidin reductase; Provisional	91.54
PRK09288	395	purT phosphoribosylglycinamide formyltransferase 2	91.53
PRK08703	239	short chain dehydrogenase; Provisional	91.51
COG0565	242	LasT rRNA methylase [Translation, ribosomal struct	91.5
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	91.49
PRK06197	306	short chain dehydrogenase; Provisional	91.41
PRK07063	260	short chain dehydrogenase; Provisional	91.33
PRK08278	273	short chain dehydrogenase; Provisional	91.31
PRK06940	275	short chain dehydrogenase; Provisional	91.29
PRK07097	265	gluconate 5-dehydrogenase; Provisional	91.24
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	91.1
PRK09135	249	pteridine reductase; Provisional	91.07
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	91.06

>PLN02306 hydroxypyruvate reductase

Probab=100.00  E-value=1.6e-44  Score=324.56  Aligned_cols=244  Identities=93%  Similarity=1.414  Sum_probs=196.0

Q ss_pred             CCCceeeeeeCCCCCeEEEEeCCCCchHHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHH
Q 026023            1 MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFA   80 (244)
Q Consensus         1 ~~~~~~~~~~~~~~~~~ilv~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~   80 (244)
                      |.||+.+.+-+|.++++|+++.++++....+.|++.+++++.....+...+.+++.+.+.+++|++++....++++++++
T Consensus         1 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~   80 (386)
T PLN02306          1 MAKPVSIEVYNPNGKYRVVSTKPMPGTRWINLLVDQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFS   80 (386)
T ss_pred             CCCCceeEeeCCCCCceEEEeCCCCcHHHHHHHHhcCceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHH
Confidence            89999999999999999999998876334677776666776443223336888999887545999998766789999999


Q ss_pred             HhhccCCcEEEEcccCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccc
Q 026023           81 ALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVG  160 (244)
Q Consensus        81 ~~p~l~~k~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~  160 (244)
                      ++|++++|+|++.|+|+||||.+++.++||.|+|++|+++.+||||++++||++.|++..+++.+++|.|.+|.+....+
T Consensus        81 ~~~~l~lk~I~~~~~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g  160 (386)
T PLN02306         81 ALSKAGGKAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVG  160 (386)
T ss_pred             hCCcCCceEEEECCcccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCC
Confidence            99976669999999999999999999999999999999999999999999999999999999999999998786543456


Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      .+|.|+||||+|+|+||+++|++++++|||+|++|||+++...+.+...+|.-....+.....+....+|+|+|++||+|
T Consensus       161 ~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV  240 (386)
T PLN02306        161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVI  240 (386)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEE
Confidence            78999999999999999999999624999999999998754322211122111111111111222346899999999999


Q ss_pred             EEeC
Q 026023          241 CTLC  244 (244)
Q Consensus       241 vl~~  244 (244)
                      ++||
T Consensus       241 ~lh~  244 (386)
T PLN02306        241 SLHP  244 (386)
T ss_pred             EEeC
Confidence            9997

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=100.00  E-value=4.1e-42  Score=302.29  Aligned_cols=206  Identities=35%  Similarity=0.535  Sum_probs=173.2

Q ss_pred             CeEEEEeCCCCchHHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEcc
Q 026023           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA   94 (244)
Q Consensus        15 ~~~ilv~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~   94 (244)
                      ++.++.+.++++. ..+.+.+. +++..+..+.. .+. ++.+.+. ++|++++....++++++++++|+|  |+|++.|
T Consensus         2 k~~~~~~~~~~~~-~~~~l~~~-~~~~~~~~~~~-~~~-~~~~~~~-~~~~i~~~~~~~i~~~~l~~~p~L--KlIa~~~   74 (324)
T COG1052           2 KIVVLSTRKLPPE-VLERLKEK-FEVERYEDDLT-PDT-ELAERLK-DADAVITFVNDRIDAEVLEKLPGL--KLIATRS   74 (324)
T ss_pred             CcEEEecCcCCHH-HHHHhhcc-EEEEEeccCCc-cch-HHHHHhc-CCcEEEEcCCCCcCHHHHHhCCCc--EEEEEec
Confidence            3457777887775 56777665 67766654422 223 6677777 499999987789999999999998  9999999


Q ss_pred             cCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCC-CCCcccccccCCCEEEEEcC
Q 026023           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW-LPNLFVGNLLKGQTVGVIGA  173 (244)
Q Consensus        95 aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~-~~~~~~~~~l~g~tvgIvG~  173 (244)
                      +||||||+++++++||.|+|+|++++++||||+++++|++.|++.++++.+++|.|..+ .+....+.+++|||+||+|+
T Consensus        75 ~G~D~vDl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~  154 (324)
T COG1052          75 AGYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGL  154 (324)
T ss_pred             cccCcccHHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECC
Confidence            99999999999999999999999999999999999999999999999999999999865 23334678999999999999


Q ss_pred             ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       174 G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      |+||+++|+++ ++|||+|+||+|+++++.++               ...+.+. +|+|++++||+|++||
T Consensus       155 GrIG~avA~r~-~~Fgm~v~y~~~~~~~~~~~---------------~~~~~y~-~l~ell~~sDii~l~~  208 (324)
T COG1052         155 GRIGQAVARRL-KGFGMKVLYYDRSPNPEAEK---------------ELGARYV-DLDELLAESDIISLHC  208 (324)
T ss_pred             CHHHHHHHHHH-hcCCCEEEEECCCCChHHHh---------------hcCceec-cHHHHHHhCCEEEEeC
Confidence            99999999997 89999999999998743322               1123344 4999999999999998

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=100.00  E-value=1.7e-40  Score=293.08  Aligned_cols=206  Identities=31%  Similarity=0.487  Sum_probs=170.2

Q ss_pred             CeEEEEeCCCCchHHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEcc
Q 026023           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA   94 (244)
Q Consensus        15 ~~~ilv~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~   94 (244)
                      +++|+++.+++++ ..+.|++. +++..... ....+.+++.+.+.+ +|++++. ..++++++++++|+|  |+|++.|
T Consensus         2 ~~~vl~~~~~~~~-~~~~l~~~-~~v~~~~~-~~~~~~~~~~~~~~~-ad~li~~-~~~~~~~~l~~~p~L--k~I~~~g   74 (323)
T PRK15409          2 KPSVILYKALPDD-LLQRLEEH-FTVTQVAN-LSPETVEQHAAAFAE-AEGLLGS-GEKVDAALLEKMPKL--RAASTIS   74 (323)
T ss_pred             CceEEEeCCCCHH-HHHHHHhc-CcEEEcCC-CCCCCHHHHHHHhcC-CeEEEEc-CCCCCHHHHhhCCCC--eEEEECc
Confidence            4789999887654 56777664 56654322 112367888888885 9999876 347999999999999  9999999


Q ss_pred             cCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCC
Q 026023           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG  174 (244)
Q Consensus        95 aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G  174 (244)
                      +|+||||.+++.++||.|+|+|++++.+||||++++||+++|++..+++.+++|.|..+......+.+|.|||+||+|+|
T Consensus        75 ~G~d~id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G  154 (323)
T PRK15409         75 VGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMG  154 (323)
T ss_pred             eecccccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEccc
Confidence            99999999999999999999999999999999999999999999999999999999754222224679999999999999


Q ss_pred             hHHHHHHHHHhc-cCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          175 RIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       175 ~IG~~vA~~la~-afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +||+++|+++ + +|||+|+||+|+.++..+.               ..+. ...+|+|++++||+|++||
T Consensus       155 ~IG~~va~~l-~~~fgm~V~~~~~~~~~~~~~---------------~~~~-~~~~l~ell~~sDvv~lh~  208 (323)
T PRK15409        155 RIGMALAQRA-HFGFNMPILYNARRHHKEAEE---------------RFNA-RYCDLDTLLQESDFVCIIL  208 (323)
T ss_pred             HHHHHHHHHH-HhcCCCEEEEECCCCchhhHH---------------hcCc-EecCHHHHHHhCCEEEEeC
Confidence            9999999997 8 9999999999986542211               0111 2358999999999999997

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=100.00  E-value=1.8e-40  Score=292.12  Aligned_cols=204  Identities=35%  Similarity=0.471  Sum_probs=171.0

Q ss_pred             CCeEEEEeCCCCchHHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEc
Q 026023           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (244)
Q Consensus        14 ~~~~ilv~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~   93 (244)
                      .++++++..++.++. .+.+.+. .++......  ..+.+++.+.+.+ +|++++ +..+++++.+..+|+|  |+|++.
T Consensus         2 ~~~~vl~~~~~~~~~-~~~l~~~-~~~~~~~~~--~~~~~~l~~~~~~-~d~~~~-~~~~v~~~~l~~~~~L--k~I~~~   73 (324)
T COG0111           2 MMIKVLVTDPLAPDA-LEELLAA-YDVEVPDGP--DLDEEELLEALAD-ADALIV-SVTPVTEEVLAAAPNL--KAIGRA   73 (324)
T ss_pred             CcceeeccCccCHHH-HHHHHhc-ccccccccc--ccchHHHHhhccc-CcEEEE-ecCCCCHHHHhhCCCc--eEEEEc
Confidence            467888888888764 5555554 333332222  3477788888885 999888 6678999999999999  999999


Q ss_pred             ccCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcC
Q 026023           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (244)
Q Consensus        94 ~aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~  173 (244)
                      |+|+||||.+++.++||.|+|+|+.|+.+||||+++++|++.|+++.+++.+++|.|++   ..+.+.+|.||||||+|+
T Consensus        74 g~Gvd~id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~---~~~~g~el~gkTvGIiG~  150 (324)
T COG0111          74 GAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDR---KAFRGTELAGKTVGIIGL  150 (324)
T ss_pred             cccccccCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccc---cccccccccCCEEEEECC
Confidence            99999999999999999999999999999999999999999999999999999999975   234567999999999999


Q ss_pred             ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       174 G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      |+||+++|+++ ++|||+|++|||+...+.+.               ..++...++|+++|++||||++|+
T Consensus       151 G~IG~~va~~l-~afgm~v~~~d~~~~~~~~~---------------~~~~~~~~~Ld~lL~~sDiv~lh~  205 (324)
T COG0111         151 GRIGRAVAKRL-KAFGMKVIGYDPYSPRERAG---------------VDGVVGVDSLDELLAEADILTLHL  205 (324)
T ss_pred             CHHHHHHHHHH-HhCCCeEEEECCCCchhhhc---------------cccceecccHHHHHhhCCEEEEcC
Confidence            99999999997 99999999999966553222               122345578999999999999996

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=100.00  E-value=5.7e-40  Score=288.69  Aligned_cols=198  Identities=25%  Similarity=0.365  Sum_probs=161.7

Q ss_pred             EEEEeCC--CCchHHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEcc
Q 026023           17 RVVSTKP--MPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA   94 (244)
Q Consensus        17 ~ilv~~~--~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~   94 (244)
                      ||++..+  +.+. ..+.|++.+ ++.....    .+++++.+.+.+ +|+++++ ..++++++++.+|+|  |+|++.|
T Consensus         2 ki~~~~~~~~~~~-~~~~l~~~~-~~~~~~~----~~~~~~~~~~~~-~d~ii~~-~~~~~~~~l~~~~~L--k~I~~~~   71 (311)
T PRK08410          2 KIVILDAKTLGDK-DLSVFEEFG-DFQIYPT----TSPEEVIERIKD-ANIIITN-KVVIDKEVLSQLPNL--KLICITA   71 (311)
T ss_pred             eEEEEecCCCChh-hHHHHhhCc-eEEEeCC----CCHHHHHHHhCC-CCEEEEC-CCCCCHHHHhhCCCC--eEEEEcc
Confidence            4555543  3333 356676653 6654321    256788888885 9999886 457999999999999  9999999


Q ss_pred             cCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCc---ccccccCCCEEEEE
Q 026023           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNL---FVGNLLKGQTVGVI  171 (244)
Q Consensus        95 aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~---~~~~~l~g~tvgIv  171 (244)
                      +|+||+|+++++++||.|+|+||+++.+||||+++++|+++|++..+++.+++|.|..+....   ..+.+|.||||||+
T Consensus        72 ~G~d~id~~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIi  151 (311)
T PRK08410         72 TGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGII  151 (311)
T ss_pred             cccccccHHHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEE
Confidence            999999999999999999999999999999999999999999999999999999997432111   12468999999999


Q ss_pred             cCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       172 G~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      |+|+||+++|+++ ++|||+|++|||+.+.. +.               .   ....+|+|++++||+|++||
T Consensus       152 G~G~IG~~vA~~~-~~fgm~V~~~d~~~~~~-~~---------------~---~~~~~l~ell~~sDvv~lh~  204 (311)
T PRK08410        152 GLGTIGKRVAKIA-QAFGAKVVYYSTSGKNK-NE---------------E---YERVSLEELLKTSDIISIHA  204 (311)
T ss_pred             CCCHHHHHHHHHH-hhcCCEEEEECCCcccc-cc---------------C---ceeecHHHHhhcCCEEEEeC
Confidence            9999999999997 99999999999975431 00               1   12468999999999999997

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=5.1e-40  Score=298.38  Aligned_cols=207  Identities=25%  Similarity=0.317  Sum_probs=175.0

Q ss_pred             eeCCCCCeEEEEeCCCCchHHHHHHHhCCC-eEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCC
Q 026023            9 VWNPNGKYRVVSTKPMPGTRWINLLIEQDC-RVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGG   87 (244)
Q Consensus         9 ~~~~~~~~~ilv~~~~~~~~~~~~l~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~   87 (244)
                      ++.|+.||+|+++.++.+. ..+.+++.++ ++.....   ..+++++.+.+.+ +|++++....++++++++.+|+|  
T Consensus         4 ~~~~~~~~~ili~~~~~~~-~~~~l~~~~~~~v~~~~~---~~~~~~~~~~~~~-~d~l~~~~~~~~~~~~l~~~~~L--   76 (409)
T PRK11790          4 VSLPKDKIKFLLLEGVHQS-AVEVLRAAGYTNIEYHKG---ALDEEELIEAIKD-AHFIGIRSRTQLTEEVLAAAEKL--   76 (409)
T ss_pred             CCCCCCCeEEEEECCCCHH-HHHHHHhcCCceEEECCC---CCCHHHHHHHcCC-CCEEEEeCCCCCCHHHHhhCCCC--
Confidence            4568888999999877654 4677777666 6654421   3477888888885 99987765667999999999999  


Q ss_pred             cEEEEcccCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCE
Q 026023           88 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQT  167 (244)
Q Consensus        88 k~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~t  167 (244)
                      |||++.|+|+||||.++++++||.|+|+||+++.+||||+++++|++.|++..+.+.+++|.|.++.   ..+.+|.|||
T Consensus        77 k~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~---~~~~~L~gkt  153 (409)
T PRK11790         77 VAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSA---AGSFEVRGKT  153 (409)
T ss_pred             eEEEECceecccccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccc---cCcccCCCCE
Confidence            9999999999999999999999999999999999999999999999999999999999999997432   3467899999


Q ss_pred             EEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       168 vgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      |||+|+|+||+++|+++ ++|||+|++|||++... .                 ..+....+|+|++++||+|++||
T Consensus       154 vGIiG~G~IG~~vA~~~-~~fGm~V~~~d~~~~~~-~-----------------~~~~~~~~l~ell~~sDiVslh~  211 (409)
T PRK11790        154 LGIVGYGHIGTQLSVLA-ESLGMRVYFYDIEDKLP-L-----------------GNARQVGSLEELLAQSDVVSLHV  211 (409)
T ss_pred             EEEECCCHHHHHHHHHH-HHCCCEEEEECCCcccc-c-----------------CCceecCCHHHHHhhCCEEEEcC
Confidence            99999999999999997 99999999999875321 0                 01223468999999999999997

>PRK13243 glyoxylate reductase; Reviewed

Probab=100.00  E-value=8.8e-39  Score=283.59  Aligned_cols=207  Identities=39%  Similarity=0.612  Sum_probs=169.7

Q ss_pred             CeEEEEeCCCCchHHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEcc
Q 026023           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA   94 (244)
Q Consensus        15 ~~~ilv~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~   94 (244)
                      +++|+++.++++. ..+.+++. +++..... ....+.+++.+.+.+ +|++++....++++++++++|+|  |||++.|
T Consensus         2 ~~kil~~~~~~~~-~~~~l~~~-~~~~~~~~-~~~~~~~~~~~~~~~-~d~~i~~~~~~~~~~~l~~~p~L--k~I~~~~   75 (333)
T PRK13243          2 KPKVFITREIPEN-GIEMLEEH-FEVEVWED-EREIPREVLLEKVRD-VDALVTMLSERIDCEVFEAAPRL--RIVANYA   75 (333)
T ss_pred             CceEEEECCCCHH-HHHHHhcC-ceEEEecC-CCCCCHHHHHHHhCC-CcEEEEeCCCCCCHHHHhhCCCC--eEEEecC
Confidence            3678888776554 45667654 46654322 223467888888885 99998875568999999999999  9999999


Q ss_pred             cCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCC----CCCcccccccCCCEEEE
Q 026023           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW----LPNLFVGNLLKGQTVGV  170 (244)
Q Consensus        95 aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~----~~~~~~~~~l~g~tvgI  170 (244)
                      +|+||+|.+++.++||.|+|++|+++.+||||++++||++.|+++.+++.+++|.|.+.    .+....+.+|.||||||
T Consensus        76 ~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgI  155 (333)
T PRK13243         76 VGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGI  155 (333)
T ss_pred             ccccccCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEE
Confidence            99999999999999999999999999999999999999999999999999999999742    22122467899999999


Q ss_pred             EcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       171 vG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +|+|+||+.+|++| ++|||+|++|||++++....   .            .+. ...++++++++||+|++|+
T Consensus       156 iG~G~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~~---~------------~~~-~~~~l~ell~~aDiV~l~l  212 (333)
T PRK13243        156 IGFGRIGQAVARRA-KGFGMRILYYSRTRKPEAEK---E------------LGA-EYRPLEELLRESDFVSLHV  212 (333)
T ss_pred             ECcCHHHHHHHHHH-HHCCCEEEEECCCCChhhHH---H------------cCC-EecCHHHHHhhCCEEEEeC
Confidence            99999999999997 99999999999987542111   0            111 2358999999999999996

>PRK06487 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=8e-39  Score=282.11  Aligned_cols=185  Identities=26%  Similarity=0.319  Sum_probs=155.8

Q ss_pred             HHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEcccCCCccChHHHhhCC
Q 026023           30 INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYG  109 (244)
Q Consensus        30 ~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~aG~d~id~~~~~~~g  109 (244)
                      .+.+++...++.....    .+.+++.+.+.+ +|+++++ ..++++++++++|+|  |||++.|+|+||+|.+++.++|
T Consensus        18 ~~~l~~~~~~~~~~~~----~~~~~~~~~~~~-~d~~i~~-~~~~~~~~l~~~~~L--k~I~~~~~G~d~id~~~~~~~g   89 (317)
T PRK06487         18 LSPLEQAFDELQLHDA----TTPEQVAERLRG-AQVAISN-KVALDAAALAAAPQL--KLILVAATGTNNVDLAAARERG   89 (317)
T ss_pred             hhHHHhhCCeEEEecC----CCHHHHHHHhCC-CeEEEEe-CCCCCHHHHhhCCCC--eEEEEcCccccccCHHHHHHCC
Confidence            3556544345544322    357888888885 9998876 457999999999999  9999999999999999999999


Q ss_pred             cEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCC---cccccccCCCEEEEEcCChHHHHHHHHHhc
Q 026023          110 IAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPN---LFVGNLLKGQTVGVIGAGRIGSAYARMMVE  186 (244)
Q Consensus       110 I~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~---~~~~~~l~g~tvgIvG~G~IG~~vA~~la~  186 (244)
                      |.|+|++|+++.+||||++++||++.|++..+.+.+++|.|..+...   ...+.+|.||||||+|+|+||+++|+++ +
T Consensus        90 I~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l-~  168 (317)
T PRK06487         90 ITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLA-E  168 (317)
T ss_pred             CEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHH-h
Confidence            99999999999999999999999999999999999999999755321   1234689999999999999999999997 9


Q ss_pred             cCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          187 GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       187 afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +|||+|++|+|+.++..                     ....+|+|++++||+|++||
T Consensus       169 ~fgm~V~~~~~~~~~~~---------------------~~~~~l~ell~~sDiv~l~l  205 (317)
T PRK06487        169 AFGMRVLIGQLPGRPAR---------------------PDRLPLDELLPQVDALTLHC  205 (317)
T ss_pred             hCCCEEEEECCCCCccc---------------------ccccCHHHHHHhCCEEEECC
Confidence            99999999998754310                     01358999999999999997

>PRK06932 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=1.6e-38  Score=279.69  Aligned_cols=170  Identities=26%  Similarity=0.338  Sum_probs=147.7

Q ss_pred             CCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEcccCCCccChHHHhhCCcEEEecCCCCCcchHHHHHH
Q 026023           50 LSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAAS  129 (244)
Q Consensus        50 ~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~  129 (244)
                      .+++++.+.+.+ +|++++. ..++++++++++|+|  |||++.|+|+||||.+++.++||.|+|+||+++.+||||+++
T Consensus        33 ~~~~~~~~~~~~-~d~ii~~-~~~~~~~~l~~~~~L--k~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~  108 (314)
T PRK06932         33 TSAEQTIERAKD-ADIVITS-KVLFTRETLAQLPKL--KLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLG  108 (314)
T ss_pred             CChHHHHHHhCC-CcEEEEe-CCCCCHHHHhhCcCC--eEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHH
Confidence            367888999985 9988875 457999999999999  999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhChHHHHHHHHcCCCCCCCCC---cccccccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHH
Q 026023          130 LSLAAARRIVEADEFMRAGLYDGWLPN---LFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF  206 (244)
Q Consensus       130 ~~L~~~R~~~~~~~~~~~~~w~~~~~~---~~~~~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~  206 (244)
                      ++|++.|+++.+.+.+++|.|..+...   ...+.+|.||||||+|+|+||+++|+++ ++|||+|++|+++.....   
T Consensus       109 l~l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l-~~fg~~V~~~~~~~~~~~---  184 (314)
T PRK06932        109 MIFALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLA-QALGMKVLYAEHKGASVC---  184 (314)
T ss_pred             HHHHHHhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHH-hcCCCEEEEECCCccccc---
Confidence            999999999999999999999753221   1234689999999999999999999997 999999999998643210   


Q ss_pred             HhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          207 VTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                                    .   ....+|+|+|++||+|++||
T Consensus       185 --------------~---~~~~~l~ell~~sDiv~l~~  205 (314)
T PRK06932        185 --------------R---EGYTPFEEVLKQADIVTLHC  205 (314)
T ss_pred             --------------c---cccCCHHHHHHhCCEEEEcC
Confidence                          0   02358999999999999997

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=100.00  E-value=2.9e-38  Score=270.72  Aligned_cols=203  Identities=31%  Similarity=0.463  Sum_probs=177.4

Q ss_pred             CeEEEEeCCCCchHHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEcc
Q 026023           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA   94 (244)
Q Consensus        15 ~~~ilv~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~   94 (244)
                      +-+||++.++... .++.|++.+..+++...    .+.||+.+.+++ +|++++++.+++++++|+...+ ++|+|.+.+
T Consensus         6 ~~~il~~e~~~~~-~~~~l~~~g~~v~~~~~----~~~eel~~~i~~-~~aviVrs~tkvtadvl~aa~~-~lkvVgrag   78 (406)
T KOG0068|consen    6 MRKILVAESLDQA-CIEILKDNGYQVEFKKN----LSLEELIEKIKD-CDALIVRSKTKVTADVLEAAAG-GLKVVGRAG   78 (406)
T ss_pred             cceEEEecccchH-HHHHHHhcCceEEEecc----CCHHHHHHHhcc-CCEEEEEeCCeecHHHHHhhcC-CeEEEEecc
Confidence            3379999998886 58999999888876543    367799999995 9999999999999999995433 459999999


Q ss_pred             cCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCC
Q 026023           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG  174 (244)
Q Consensus        95 aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G  174 (244)
                      +|+||+|++++.++||.|.|+|.+|+.++||++++++++++|++++....+++|+|++   ..+.+.+|+|||+||+|+|
T Consensus        79 ~G~dNVDL~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr---~~~~G~el~GKTLgvlG~G  155 (406)
T KOG0068|consen   79 IGVDNVDLKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWNR---VKYLGWELRGKTLGVLGLG  155 (406)
T ss_pred             cCccccChhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCceee---cceeeeEEeccEEEEeecc
Confidence            9999999999999999999999999999999999999999999999999999999874   3356889999999999999


Q ss_pred             hHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          175 RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       175 ~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +||+++|+++ ++|||+|++||+.......+               .+ .....+|+|+|+.||||++||
T Consensus       156 rIGseVA~r~-k~~gm~vI~~dpi~~~~~~~---------------a~-gvq~vsl~Eil~~ADFitlH~  208 (406)
T KOG0068|consen  156 RIGSEVAVRA-KAMGMHVIGYDPITPMALAE---------------AF-GVQLVSLEEILPKADFITLHV  208 (406)
T ss_pred             cchHHHHHHH-HhcCceEEeecCCCchHHHH---------------hc-cceeeeHHHHHhhcCEEEEcc
Confidence            9999999996 99999999999987653222               11 124569999999999999997

>PLN03139 formate dehydrogenase; Provisional

Probab=100.00  E-value=3.8e-37  Score=276.18  Aligned_cols=194  Identities=21%  Similarity=0.210  Sum_probs=162.2

Q ss_pred             HHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEecc--CccccHHHHHHhhccCCcEEEEcccCCCccChHHHhh
Q 026023           30 INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANK  107 (244)
Q Consensus        30 ~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~--~~~~~~~~l~~~p~l~~k~I~~~~aG~d~id~~~~~~  107 (244)
                      .+.|++.++++....+.  ..+++++.+.+.+ +|++++..  +.+++++.++++|+|  |||++.|+|+||||++++.+
T Consensus        68 ~~~l~~~g~~~v~~~~~--~~~~~~~~~~l~d-adili~~~~~~~~~~~e~l~~ap~L--K~I~~~g~G~D~iDl~aa~~  142 (386)
T PLN03139         68 RDWLESQGHQYIVTDDK--EGPDCELEKHIPD-LHVLITTPFHPAYVTAERIKKAKNL--ELLLTAGIGSDHIDLPAAAA  142 (386)
T ss_pred             HHHHHhcCCeEEEeCCC--CCCHHHHHHHhCC-CeEEEEcCccCCCCCHHHHhhCCCc--cEEEECCccccccCHHHHHH
Confidence            45567777888765433  3477888999985 99998853  246999999999999  99999999999999999999


Q ss_pred             CCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHhcc
Q 026023          108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG  187 (244)
Q Consensus       108 ~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~IG~~vA~~la~a  187 (244)
                      +||.|+|++|+|+.+||||++++||++.|++..+++.+++|.|... .....+.+|.|+||||+|+|+||+++|++| ++
T Consensus       143 ~gI~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~-~~~~~~~~L~gktVGIVG~G~IG~~vA~~L-~a  220 (386)
T PLN03139        143 AGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVA-GIAYRAYDLEGKTVGTVGAGRIGRLLLQRL-KP  220 (386)
T ss_pred             CCeEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccc-cccCCCcCCCCCEEEEEeecHHHHHHHHHH-HH
Confidence            9999999999999999999999999999999999999999999731 111345789999999999999999999998 89


Q ss_pred             CCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          188 FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       188 fG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      |||+|++|||+..+....  .            ..++...++++|++++||+|++||
T Consensus       221 fG~~V~~~d~~~~~~~~~--~------------~~g~~~~~~l~ell~~sDvV~l~l  263 (386)
T PLN03139        221 FNCNLLYHDRLKMDPELE--K------------ETGAKFEEDLDAMLPKCDVVVINT  263 (386)
T ss_pred             CCCEEEEECCCCcchhhH--h------------hcCceecCCHHHHHhhCCEEEEeC
Confidence            999999999986432111  0            112233468999999999999997

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=100.00  E-value=4.7e-37  Score=287.23  Aligned_cols=201  Identities=33%  Similarity=0.483  Sum_probs=168.8

Q ss_pred             EEEEeCCCCchHHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEcccC
Q 026023           17 RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVG   96 (244)
Q Consensus        17 ~ilv~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~aG   96 (244)
                      +|+++.++.+. ..+.|++.++++....    ..+++++.+.+++ +|++++++..++++++++++|+|  |||++.|+|
T Consensus         1 ~vli~~~~~~~-~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~-~d~li~~~~~~~~~~~l~~~~~L--k~I~~~~~G   72 (525)
T TIGR01327         1 KVLIADPISPD-GIDILEDVGVEVDVQT----GLSREELLEIIPD-YDALIVRSATKVTEEVIAAAPKL--KVIGRAGVG   72 (525)
T ss_pred             CEEEeCCCCHH-HHHHHHhcCcEEEeCC----CCCHHHHHHHhcC-CCEEEEcCCCCcCHHHHhhCCCc--eEEEECCcc
Confidence            46777776654 5677776666776421    2367889999985 99998876678999999999999  999999999


Q ss_pred             CCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCChH
Q 026023           97 YNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI  176 (244)
Q Consensus        97 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~I  176 (244)
                      +||+|++++.++||.|+|+|++++.+||||++++||+++|+++.+++.+++|.|.+.   .+.+.+|.||||||+|+|+|
T Consensus        73 ~d~id~~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~---~~~g~~l~gktvgIiG~G~I  149 (525)
T TIGR01327        73 VDNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRK---AFMGTELYGKTLGVIGLGRI  149 (525)
T ss_pred             cchhcHHHHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCcccc---ccCccccCCCEEEEECCCHH
Confidence            999999999999999999999999999999999999999999999999999999742   23467899999999999999


Q ss_pred             HHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       177 G~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      |+++|++| ++|||+|++|||+...+...               ..++...++++|++++||+|++||
T Consensus       150 G~~vA~~l-~~fG~~V~~~d~~~~~~~~~---------------~~g~~~~~~l~ell~~aDvV~l~l  201 (525)
T TIGR01327       150 GSIVAKRA-KAFGMKVLAYDPYISPERAE---------------QLGVELVDDLDELLARADFITVHT  201 (525)
T ss_pred             HHHHHHHH-HhCCCEEEEECCCCChhHHH---------------hcCCEEcCCHHHHHhhCCEEEEcc
Confidence            99999997 99999999999975432111               112223458999999999999997

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK07574 formate dehydrogenase; Provisional

Probab=100.00  E-value=1.4e-36  Score=272.60  Aligned_cols=193  Identities=25%  Similarity=0.270  Sum_probs=161.7

Q ss_pred             HHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEecc--CccccHHHHHHhhccCCcEEEEcccCCCccChHHHhhC
Q 026023           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKY  108 (244)
Q Consensus        31 ~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~--~~~~~~~~l~~~p~l~~k~I~~~~aG~d~id~~~~~~~  108 (244)
                      +.|++.++++.+..+  ...+++++.+.+.+ +|++++..  ..+++++.++++|+|  |||++.|+|+||+|++++.++
T Consensus        62 ~~l~~~g~e~~~~~~--~~~~~~~~~~~l~d-adili~~~~~~~~~~~e~l~~~p~L--K~I~~~g~G~D~id~~aa~~~  136 (385)
T PRK07574         62 KFLEERGHELVVTSD--KDGPDSDFEKELPD-ADVVISQPFWPAYLTAERIAKAPNL--KLAITAGIGSDHVDLQAASEH  136 (385)
T ss_pred             HHHHhcCcEEEEeCC--CCCCHHHHHHHcCC-CeEEEEecCCCCCCCHHHHhhCCCC--cEEEECCcccccccHHHHHHC
Confidence            557777788876432  23477888888985 99998853  357999999999999  999999999999999999999


Q ss_pred             CcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHhccC
Q 026023          109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF  188 (244)
Q Consensus       109 gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~IG~~vA~~la~af  188 (244)
                      ||.|+|++++|+.+||||+++++|++.|++..+++.+++|.|..+.. ...+.+|.|+||||+|+|+||+.+|++| ++|
T Consensus       137 gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~-~~~~~~L~gktVGIvG~G~IG~~vA~~l-~~f  214 (385)
T PRK07574        137 GITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADC-VSRSYDLEGMTVGIVGAGRIGLAVLRRL-KPF  214 (385)
T ss_pred             CcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccc-cccceecCCCEEEEECCCHHHHHHHHHH-HhC
Confidence            99999999999999999999999999999999999999999975321 1235789999999999999999999998 999


Q ss_pred             CcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          189 KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       189 G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      ||+|++|||+..+....  .            ..++....+++|++++||+|++||
T Consensus       215 G~~V~~~dr~~~~~~~~--~------------~~g~~~~~~l~ell~~aDvV~l~l  256 (385)
T PRK07574        215 DVKLHYTDRHRLPEEVE--Q------------ELGLTYHVSFDSLVSVCDVVTIHC  256 (385)
T ss_pred             CCEEEEECCCCCchhhH--h------------hcCceecCCHHHHhhcCCEEEEcC
Confidence            99999999987432111  0            112333568999999999999997

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=1.6e-36  Score=283.72  Aligned_cols=201  Identities=32%  Similarity=0.465  Sum_probs=168.0

Q ss_pred             eEEEEeCCCCchHHHHHHHhC-CCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEcc
Q 026023           16 YRVVSTKPMPGTRWINLLIEQ-DCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA   94 (244)
Q Consensus        16 ~~ilv~~~~~~~~~~~~l~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~   94 (244)
                      |+|+++.++++. ..+.|++. ++++...  .  ..+.+++.+.+++ +|++++++..++++++++++|+|  |||++.|
T Consensus         1 m~ili~~~~~~~-~~~~l~~~~~~~v~~~--~--~~~~~~~~~~~~~-~d~~i~~~~~~~~~~~l~~~~~L--k~I~~~~   72 (526)
T PRK13581          1 MKVLVSDPISPA-GLEILKDAPGVEVDVK--T--GLDKEELLEIIGD-YDALIVRSATKVTAEVLEAAKNL--KVIGRAG   72 (526)
T ss_pred             CeEEEeCCCCHH-HHHHHhccCCeEEEeC--C--CCCHHHHHHHhcC-CCEEEEcCCCCCCHHHHhhCCCC--eEEEECC
Confidence            468888777654 46677665 4566532  1  2367888888985 99998876668999999999999  9999999


Q ss_pred             cCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCC
Q 026023           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG  174 (244)
Q Consensus        95 aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G  174 (244)
                      +|+||+|.+++.++||.|+|+|++++.+||||++++||+++|+++.+++.+++|.|.++   .+.+.+|.||||||+|+|
T Consensus        73 ~G~d~id~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~---~~~g~~l~gktvgIiG~G  149 (526)
T PRK13581         73 VGVDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERK---KFMGVELYGKTLGIIGLG  149 (526)
T ss_pred             cccccccHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCcc---CccccccCCCEEEEECCC
Confidence            99999999999999999999999999999999999999999999999999999999742   134678999999999999


Q ss_pred             hHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          175 RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       175 ~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +||+.+|++| ++|||+|++|||+...+...               ..++.. .+++|++++||+|++||
T Consensus       150 ~IG~~vA~~l-~~fG~~V~~~d~~~~~~~~~---------------~~g~~~-~~l~ell~~aDiV~l~l  202 (526)
T PRK13581        150 RIGSEVAKRA-KAFGMKVIAYDPYISPERAA---------------QLGVEL-VSLDELLARADFITLHT  202 (526)
T ss_pred             HHHHHHHHHH-HhCCCEEEEECCCCChhHHH---------------hcCCEE-EcHHHHHhhCCEEEEcc
Confidence            9999999997 99999999999976432111               011222 38999999999999996

>PRK08605 D-lactate dehydrogenase; Validated

Probab=100.00  E-value=2.2e-36  Score=268.31  Aligned_cols=207  Identities=23%  Similarity=0.429  Sum_probs=165.3

Q ss_pred             CCeEEEEeCCCCchHHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEc
Q 026023           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (244)
Q Consensus        14 ~~~~ilv~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~   93 (244)
                      .+++++++.+.+.+ +.+.+.+. ++++...... ..+ +|..+.+.+ +|++++....++++++++++|++++|+|++.
T Consensus         2 ~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~-~~~-~e~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~lk~I~~~   76 (332)
T PRK08605          2 TKIKIMSVRDEDAP-YIKAWAEK-HHVEVDLTKE-ALT-DDNVEEVEG-FDGLSLSQQIPLSEAIYKLLNELGIKQIAQR   76 (332)
T ss_pred             cEEEEEecCHHHHH-HHHHHHHh-cCeEEEEecC-CCC-HHHHHHhcC-CCEEEEecCCCCCHHHHHhhhhcCceEEEEc
Confidence            34667777765544 56666554 2333222111 234 455677774 9999887667899999999998555999999


Q ss_pred             ccCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcC
Q 026023           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (244)
Q Consensus        94 ~aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~  173 (244)
                      |+|+||+|+++++++||.|+|+|++++.+||||+++++|++.|++..+++.+++|.|. |... ..+.+|.|++|||||+
T Consensus        77 ~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~-~~~~-~~~~~l~g~~VgIIG~  154 (332)
T PRK08605         77 SAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFR-WEPP-ILSRSIKDLKVAVIGT  154 (332)
T ss_pred             ccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcc-cccc-cccceeCCCEEEEECC
Confidence            9999999999999999999999999999999999999999999999999999999985 6442 2467899999999999


Q ss_pred             ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       174 G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      |+||+.+|++|+++|||+|++||+++.......                 .....++++++++||+|++|+
T Consensus       155 G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~-----------------~~~~~~l~ell~~aDvIvl~l  208 (332)
T PRK08605        155 GRIGLAVAKIFAKGYGSDVVAYDPFPNAKAATY-----------------VDYKDTIEEAVEGADIVTLHM  208 (332)
T ss_pred             CHHHHHHHHHHHhcCCCEEEEECCCccHhHHhh-----------------ccccCCHHHHHHhCCEEEEeC
Confidence            999999999974699999999999875432110                 112358999999999999986

>PLN02928 oxidoreductase family protein

Probab=100.00  E-value=1e-35  Score=265.16  Aligned_cols=216  Identities=23%  Similarity=0.237  Sum_probs=165.0

Q ss_pred             eCCCCCeEEEEeCCCCch--HH-HHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccC
Q 026023           10 WNPNGKYRVVSTKPMPGT--RW-INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAG   86 (244)
Q Consensus        10 ~~~~~~~~ilv~~~~~~~--~~-~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~   86 (244)
                      -|.+.+++|+++.+..++  .+ .+.+++.+  +..+..    .+.+++.+.+.+ +|+++++ ..++++++++.+|+| 
T Consensus        13 ~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~e~~~~~~~-~d~~i~~-~~~~~~~~l~~~~~L-   83 (347)
T PLN02928         13 HSDMRPTRVLFCGPEFPASYSYTREYLQKYP--FIQVDA----VAREDVPDVIAN-YDICVPK-MMRLDADIIARASQM-   83 (347)
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHhhcCC--eeEecC----CCHHHHHHHhcC-CcEEEEC-CCCCCHHHHhcCCCc-
Confidence            345677889999876553  12 34443333  222221    366788888885 9998876 447999999999999 


Q ss_pred             CcEEEEcccCCCccChHHHhhCCcEEEecCCC---CCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCccccccc
Q 026023           87 GKAFSNMAVGYNNVDVNAANKYGIAVGNTPGV---LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLL  163 (244)
Q Consensus        87 ~k~I~~~~aG~d~id~~~~~~~gI~v~n~~~~---~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l  163 (244)
                       |||++.++|+||+|++++.++||.|+|+|++   ++.+||||+++++|+++|++..+.+.++++.|..     ..+.+|
T Consensus        84 -k~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~-----~~~~~l  157 (347)
T PLN02928         84 -KLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGE-----PIGDTL  157 (347)
T ss_pred             -eEEEECCcccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCccc-----ccccCC
Confidence             9999999999999999999999999999985   7899999999999999999999999999999853     245789


Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      .|+|+||+|+|+||+.+|++| ++|||+|++|+|+.+........ +  ................+|+|++++||+|++|
T Consensus       158 ~gktvGIiG~G~IG~~vA~~l-~afG~~V~~~dr~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~  233 (347)
T PLN02928        158 FGKTVFILGYGAIGIELAKRL-RPFGVKLLATRRSWTSEPEDGLL-I--PNGDVDDLVDEKGGHEDIYEFAGEADIVVLC  233 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-hhCCCEEEEECCCCChhhhhhhc-c--ccccccccccccCcccCHHHHHhhCCEEEEC
Confidence            999999999999999999997 99999999999985432111000 0  0000000000011346999999999999999


Q ss_pred             C
Q 026023          244 C  244 (244)
Q Consensus       244 ~  244 (244)
                      |
T Consensus       234 l  234 (347)
T PLN02928        234 C  234 (347)
T ss_pred             C
Confidence            6

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=100.00  E-value=1.1e-35  Score=263.28  Aligned_cols=204  Identities=25%  Similarity=0.404  Sum_probs=162.8

Q ss_pred             CeEEEEeCCCCch-HHH-HHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEE
Q 026023           15 KYRVVSTKPMPGT-RWI-NLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN   92 (244)
Q Consensus        15 ~~~ilv~~~~~~~-~~~-~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~   92 (244)
                      ||||++.+..+.+ ++. +.+++.++++....  . ..+++ ..+.+.+ +|+++++...++++++++++|+.++|+|++
T Consensus         1 ~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~--~-~~~~~-~~~~~~~-~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~   75 (330)
T PRK12480          1 MTKIMFFGTRDYEKEMALNWGKKNNVEVTTSK--E-LLSSA-TVDQLKD-YDGVTTMQFGKLENDVYPKLESYGIKQIAQ   75 (330)
T ss_pred             CcEEEEEeCcHHHHHHHHHHHHhcCeEEEEcC--C-CCCHH-HHHHhCC-CCEEEEecCCCCCHHHHHhhhhcCceEEEe
Confidence            4788776543332 333 33455555554322  2 34555 4777874 999998766689999999998323399999


Q ss_pred             cccCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEc
Q 026023           93 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG  172 (244)
Q Consensus        93 ~~aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG  172 (244)
                      .++|+||+|.+++.++||.|+|+|++++++||||+++++|++.|+++.+.+.+++|.|. |... ..+.+|.|++|||+|
T Consensus        76 ~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~-w~~~-~~~~~l~g~~VgIIG  153 (330)
T PRK12480         76 RTAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFT-WQAE-IMSKPVKNMTVAIIG  153 (330)
T ss_pred             cccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcc-cccc-cCccccCCCEEEEEC
Confidence            99999999999999999999999999999999999999999999999999999999875 5332 246789999999999


Q ss_pred             CChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       173 ~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +|+||+.+|++| ++|||+|++||+++.... .+                 .....++++++++||+|++|+
T Consensus       154 ~G~IG~~vA~~L-~~~G~~V~~~d~~~~~~~-~~-----------------~~~~~~l~ell~~aDiVil~l  206 (330)
T PRK12480        154 TGRIGAATAKIY-AGFGATITAYDAYPNKDL-DF-----------------LTYKDSVKEAIKDADIISLHV  206 (330)
T ss_pred             CCHHHHHHHHHH-HhCCCEEEEEeCChhHhh-hh-----------------hhccCCHHHHHhcCCEEEEeC
Confidence            999999999998 899999999999875421 10                 112358999999999999996

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=100.00  E-value=5.7e-34  Score=248.64  Aligned_cols=176  Identities=36%  Similarity=0.559  Sum_probs=149.3

Q ss_pred             CCHHHHHHHhcCCccEEEeccCccccHHHHHHh-hccCCcEEEEcccCCCccChHHHhhCCcEEEecCCCCCcchHHHHH
Q 026023           50 LSVEDIIALIGDKCDGVIGQLTEDWGETLFAAL-SRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAA  128 (244)
Q Consensus        50 ~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~-p~l~~k~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l  128 (244)
                      ++..++.+.+.+...++.+......+.+.+... |++  |+|.++|+|+||||+++|++|||+|+|+|+.+..+|||+++
T Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~p~l--K~i~t~~vG~D~vDl~a~~krgI~V~nvp~~~~~~vAd~~~  126 (336)
T KOG0069|consen   49 LIKTDFLKRIADSRIAISVPFTGAFTKELISALSPNL--KLIVTMSVGYDHVDLEAARKRGIRVANVPDVLTDDVADLAV  126 (336)
T ss_pred             cchhhhhhhccceeeeeecccchHHhHhhhhhcCCCe--eEEEEeecccchhhHHHHHhcCceEeccCCcchHHHHHHHH
Confidence            455556666665344455555567788888877 888  99999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHh
Q 026023          129 SLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT  208 (244)
Q Consensus       129 ~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~  208 (244)
                      +++|.+.|++..+++++++|.| .|....+.+..+.||||||+|+|+||+.+|++| ++|||.+.|++|+.....+. .+
T Consensus       127 ~lil~~~R~~~~g~~~~~~g~w-~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL-~~Fg~~i~y~~r~~~~~~~~-~~  203 (336)
T KOG0069|consen  127 SLLLALLRRFSEGNEMVRNGGW-GWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRL-KPFGCVILYHSRTQLPPEEA-YE  203 (336)
T ss_pred             HHHHHHHhhhhhhhhhhhcCCc-cccCCccccccccCCEEEEecCcHHHHHHHHhh-hhccceeeeecccCCchhhH-HH
Confidence            9999999999999999999999 687777788999999999999999999999998 99999999999987643222 11


Q ss_pred             hhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          209 AYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                       |+             ....+++|++++||+||+||
T Consensus       204 -~~-------------~~~~d~~~~~~~sD~ivv~~  225 (336)
T KOG0069|consen  204 -YY-------------AEFVDIEELLANSDVIVVNC  225 (336)
T ss_pred             -hc-------------ccccCHHHHHhhCCEEEEec
Confidence             10             11469999999999999998

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=100.00  E-value=1.2e-32  Score=246.38  Aligned_cols=175  Identities=23%  Similarity=0.304  Sum_probs=141.9

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEccc
Q 026023           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (244)
Q Consensus        16 ~~ilv~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~a   95 (244)
                      |||++...++.  ..+.+.+. .++.+...  ...+.++    ++ ++|++++++.+++++++++ .|+|  |||++.++
T Consensus         1 mkIl~d~~~~~--~~~~~~~~-~ev~~~~~--~~~~~~~----l~-daD~liv~s~t~v~~~ll~-~~~L--k~I~~~~~   67 (378)
T PRK15438          1 MKILVDENMPY--ARELFSRL-GEVKAVPG--RPIPVAQ----LA-DADALMVRSVTKVNESLLA-GKPI--KFVGTATA   67 (378)
T ss_pred             CEEEEeCCcch--HHHHHhhc-CcEEEeCC--CCCCHHH----hC-CCcEEEEcCCCCCCHHHhc-CCCC--eEEEECcc
Confidence            57888876653  24556554 37766532  2334444    44 5999998776789999986 6888  99999999


Q ss_pred             CCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh
Q 026023           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR  175 (244)
Q Consensus        96 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~  175 (244)
                      |+||||.+++.++||.|+|+||+|+.+||||+++++|++.|+.                     +.+|.|+||||||+|+
T Consensus        68 G~D~iD~~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~~---------------------g~~L~gktvGIIG~G~  126 (378)
T PRK15438         68 GTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAERD---------------------GFSLHDRTVGIVGVGN  126 (378)
T ss_pred             cccccCHHHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhccC---------------------CCCcCCCEEEEECcCH
Confidence            9999999999999999999999999999999999999999861                     2369999999999999


Q ss_pred             HHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       176 IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      ||+++|++| ++|||+|++|||..... ..                  ...+.+|++++++||+|++|+
T Consensus       127 IG~~vA~~l-~a~G~~V~~~dp~~~~~-~~------------------~~~~~~L~ell~~sDiI~lh~  175 (378)
T PRK15438        127 VGRRLQARL-EALGIKTLLCDPPRADR-GD------------------EGDFRSLDELVQEADILTFHT  175 (378)
T ss_pred             HHHHHHHHH-HHCCCEEEEECCccccc-cc------------------ccccCCHHHHHhhCCEEEEeC
Confidence            999999997 99999999999864321 00                  012468999999999999996

>PRK06436 glycerate dehydrogenase; Provisional

Probab=99.98  E-value=1.6e-31  Score=233.72  Aligned_cols=148  Identities=22%  Similarity=0.358  Sum_probs=125.0

Q ss_pred             CccEEEeccCccccHHHHHHhhccCCcEEEEcccCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHH
Q 026023           62 KCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEA  141 (244)
Q Consensus        62 ~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~  141 (244)
                      ++|+++....       +...|+|  |||++.++|+||+|.+++.++++.++| ++.++.+||||+++++|++.|+++.+
T Consensus        34 ~a~~~~~~~~-------~~~~~~L--k~I~~~~aG~D~id~~~~~~~~i~~~~-~g~~~~~VAE~~l~l~L~l~R~i~~~  103 (303)
T PRK06436         34 DAEAILIKGR-------YVPGKKT--KMIQSLSAGVDHIDVSGIPENVVLCSN-AGAYSISVAEHAFALLLAWAKNICEN  103 (303)
T ss_pred             CCCEEEecCC-------cCCCCCe--EEEEECCcccCcccHHHHHhCCeEEEc-CCCCcHHHHHHHHHHHHHHHcChHHH
Confidence            4888865422       1235777  999999999999999999998887777 58889999999999999999999999


Q ss_pred             HHHHHcCCCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCC
Q 026023          142 DEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP  221 (244)
Q Consensus       142 ~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (244)
                      .+.+++|.|...     .+.+|+||||||+|+|+||+++|+++ ++|||+|++|+|+..+.               +   
T Consensus       104 ~~~~~~g~w~~~-----~~~~L~gktvgIiG~G~IG~~vA~~l-~afG~~V~~~~r~~~~~---------------~---  159 (303)
T PRK06436        104 NYNMKNGNFKQS-----PTKLLYNKSLGILGYGGIGRRVALLA-KAFGMNIYAYTRSYVND---------------G---  159 (303)
T ss_pred             HHHHHcCCCCCC-----CCCCCCCCEEEEECcCHHHHHHHHHH-HHCCCEEEEECCCCccc---------------C---
Confidence            999999998742     34689999999999999999999997 99999999999985431               0   


Q ss_pred             ccccccCCHHHHhhhCCEEEEeC
Q 026023          222 VTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       222 ~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      .. ....++++++++||+|++||
T Consensus       160 ~~-~~~~~l~ell~~aDiv~~~l  181 (303)
T PRK06436        160 IS-SIYMEPEDIMKKSDFVLISL  181 (303)
T ss_pred             cc-cccCCHHHHHhhCCEEEECC
Confidence            00 01358999999999999996

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=99.98  E-value=2e-31  Score=239.11  Aligned_cols=175  Identities=19%  Similarity=0.297  Sum_probs=141.1

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEccc
Q 026023           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (244)
Q Consensus        16 ~~ilv~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~a   95 (244)
                      |||++...++..  .+.+.+.+ ++.+....  ..+.    +.++ ++|++++++.+++++++++ .|+|  |||++.++
T Consensus         1 mkI~~d~~~p~~--~~~~~~~~-~v~~~~~~--~~~~----~~l~-daD~liv~~~t~v~~~ll~-~~~L--k~I~~~~~   67 (381)
T PRK00257          1 MKIVADENIPLL--DAFFAGFG-EIRRLPGR--AFDR----AAVR-DADVLLVRSVTRVDRALLE-GSRV--RFVGTCTI   67 (381)
T ss_pred             CEEEEecCchhH--HHHHhhCC-cEEEcCCc--ccCH----HHhC-CceEEEEeCCCCCCHHHhc-CCCC--eEEEECCc
Confidence            688888877532  34455543 66654321  2233    3455 5999988877789999997 5888  99999999


Q ss_pred             CCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh
Q 026023           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR  175 (244)
Q Consensus        96 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~  175 (244)
                      |+||+|.+++.++||.|+|+||+|+.+||||+++++|++.|+                     .+.++.|+||||||+|+
T Consensus        68 G~D~iD~~~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~---------------------~g~~l~gktvGIIG~G~  126 (381)
T PRK00257         68 GTDHLDLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER---------------------EGVDLAERTYGVVGAGH  126 (381)
T ss_pred             cccccCHHHHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcc---------------------cCCCcCcCEEEEECCCH
Confidence            999999999999999999999999999999999999999875                     12469999999999999


Q ss_pred             HHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       176 IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      ||+++|+++ ++|||+|++|||..... +                  ....+.+|+|++++||+|++|+
T Consensus       127 IG~~va~~l-~a~G~~V~~~Dp~~~~~-~------------------~~~~~~~l~ell~~aDiV~lh~  175 (381)
T PRK00257        127 VGGRLVRVL-RGLGWKVLVCDPPRQEA-E------------------GDGDFVSLERILEECDVISLHT  175 (381)
T ss_pred             HHHHHHHHH-HHCCCEEEEECCccccc-c------------------cCccccCHHHHHhhCCEEEEeC
Confidence            999999997 99999999999864321 0                  0113468999999999999996

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=99.97  E-value=7.6e-31  Score=230.65  Aligned_cols=188  Identities=17%  Similarity=0.197  Sum_probs=144.3

Q ss_pred             EEEEeCCC-CchHHHHHHHhC--CCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEc
Q 026023           17 RVVSTKPM-PGTRWINLLIEQ--DCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (244)
Q Consensus        17 ~ilv~~~~-~~~~~~~~l~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~   93 (244)
                      .+++..+. ....|.+.|++.  ++++..+...       +    .. ++|+++++..   +.+.++ .|+|  |||++.
T Consensus         2 ~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~-------~----~~-~a~~~~~~~~---~~~~l~-~~~L--k~I~~~   63 (312)
T PRK15469          2 DIIFYHPTFDTQWWIEALRKALPQARVRAWKSG-------D----ND-PADYALVWHP---PVEMLA-GRDL--KAVFAL   63 (312)
T ss_pred             EEEEeCCccCHHHHHHHHHHHCCCCeEEecCCC-------C----Cc-cCeEEEEeCC---ChHHhc-cCCc--eEEEEc
Confidence            56666554 444477888775  4455432221       1    13 5999998742   456665 5888  999999


Q ss_pred             ccCCCccChHH-----HhhCCcEEEecCC-CCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCE
Q 026023           94 AVGYNNVDVNA-----ANKYGIAVGNTPG-VLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQT  167 (244)
Q Consensus        94 ~aG~d~id~~~-----~~~~gI~v~n~~~-~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~t  167 (244)
                      |+|+|++|...     +.++||.|+|+++ .++.+||||+++++|++.|+++.+.+.++++.|...     ...++.|+|
T Consensus        64 ~aG~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~-----~~~~l~g~t  138 (312)
T PRK15469         64 GAGVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQPL-----PEYHREDFT  138 (312)
T ss_pred             ccccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCCC-----CCCCcCCCE
Confidence            99999998332     4458999999864 689999999999999999999999999999998642     235799999


Q ss_pred             EEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       168 vgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      |||+|+|+||+.+|++| ++|||+|++|+++++... .             ...  ....++|++++++||+|++|+
T Consensus       139 vgIvG~G~IG~~vA~~l-~afG~~V~~~~~~~~~~~-~-------------~~~--~~~~~~l~e~l~~aDvvv~~l  198 (312)
T PRK15469        139 IGILGAGVLGSKVAQSL-QTWGFPLRCWSRSRKSWP-G-------------VQS--FAGREELSAFLSQTRVLINLL  198 (312)
T ss_pred             EEEECCCHHHHHHHHHH-HHCCCEEEEEeCCCCCCC-C-------------cee--ecccccHHHHHhcCCEEEECC
Confidence            99999999999999998 899999999999765410 0             001  113468999999999999996

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=99.86  E-value=8.1e-22  Score=160.49  Aligned_cols=99  Identities=37%  Similarity=0.480  Sum_probs=78.9

Q ss_pred             HHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHH
Q 026023          128 ASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV  207 (244)
Q Consensus       128 l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~  207 (244)
                      ++++|++.|+++.+.+.++++.|  +......+.++.|+||||+|+|+||+++|+++ ++|||+|++|||+.++....  
T Consensus         1 i~l~L~~~R~~~~~~~~~~~~~W--~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l-~~fG~~V~~~d~~~~~~~~~--   75 (178)
T PF02826_consen    1 IALMLALLRRLPEYHEAQRNGEW--ASRERFPGRELRGKTVGIIGYGRIGRAVARRL-KAFGMRVIGYDRSPKPEEGA--   75 (178)
T ss_dssp             HHHHHHHHTTHHHHHHHHHTTBH--HHHTTTTBS-STTSEEEEESTSHHHHHHHHHH-HHTT-EEEEEESSCHHHHHH--
T ss_pred             ChHHHHHHhCHHHHHHHHHcCCC--CCCcCCCccccCCCEEEEEEEcCCcCeEeeee-ecCCceeEEecccCChhhhc--
Confidence            68999999999999999999998  12223467899999999999999999999997 99999999999998864311  


Q ss_pred             hhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      ..            . .....+++|++++||+|++||
T Consensus        76 ~~------------~-~~~~~~l~ell~~aDiv~~~~   99 (178)
T PF02826_consen   76 DE------------F-GVEYVSLDELLAQADIVSLHL   99 (178)
T ss_dssp             HH------------T-TEEESSHHHHHHH-SEEEE-S
T ss_pred             cc------------c-cceeeehhhhcchhhhhhhhh
Confidence            11            1 114569999999999999997

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>KOG0067 consensus Transcription factor CtBP [Transcription]

Probab=99.80  E-value=7.6e-20  Score=159.20  Aligned_cols=177  Identities=26%  Similarity=0.366  Sum_probs=150.6

Q ss_pred             CCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEcccCCCccChHHHhhCCcEEEecCCCCCcchHHHHHH
Q 026023           50 LSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAAS  129 (244)
Q Consensus        50 ~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~  129 (244)
                      .+..|+.+++-+++-+.+.+.+..++++.+++++.|  |++...+.|+|++|+.++.+.||.+||.|+..-+.+|+.++.
T Consensus        61 qstqeIhekvLneavgam~yh~i~l~reDlEkfkal--Rv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~  138 (435)
T KOG0067|consen   61 QSTQEIHEKVLNEAVGAMMYHTITLPREDLEKFKAL--RVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLC  138 (435)
T ss_pred             cchHHHHHHHHHHhhhcceeeecccchhhHHHhhhh--ceeeeeccccchhhhhhhhhheeeeecccchhHHHHHHHHHH
Confidence            477888887655566666776778999999999999  999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhChHHHHHHHHcCCCCCCCCC----cccccccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHH
Q 026023          130 LSLAAARRIVEADEFMRAGLYDGWLPN----LFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK  205 (244)
Q Consensus       130 ~~L~~~R~~~~~~~~~~~~~w~~~~~~----~~~~~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~  205 (244)
                      .+|.++|+.....+..++|.|.+-...    ......++|.++|++|+|++|+.++.+ |++||..|+.||++...-.+.
T Consensus       139 hIl~l~rrntw~cq~l~eg~~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~-A~afg~~~ifydp~~~~g~~~  217 (435)
T KOG0067|consen  139 HILNLYRRNTWLCQALREGTCTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALR-AKAFGFVVIFYDPYLIDGIDK  217 (435)
T ss_pred             HHHhhhcccchhhhhhcccceeechhhhhhhhhccccccccceeeeccccccceehhh-hhcccceeeeecchhhhhhhh
Confidence            999999999999999999998542111    112356899999999999999999999 699999999999998764443


Q ss_pred             HHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          206 FVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      ++               +.....+|.+++.++|.+++||
T Consensus       218 ~l---------------g~~rVytlqd~~~~sd~~S~hc  241 (435)
T KOG0067|consen  218 SL---------------GLQRVYTLQDLLYQSDCVSLHC  241 (435)
T ss_pred             hc---------------ccceecccchhhhhccceeeec
Confidence            22               2233457999999999999998

>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=99.78  E-value=2.1e-18  Score=133.84  Aligned_cols=101  Identities=32%  Similarity=0.441  Sum_probs=86.9

Q ss_pred             EEEeCCCCchHHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEcccCC
Q 026023           18 VVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGY   97 (244)
Q Consensus        18 ilv~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~aG~   97 (244)
                      ||++.+++++ .++.|++ ++++.+..    ..+.+++.+.+++ +|+++++...++++++++.+|+|  |||++.|+|+
T Consensus         1 ili~~~~~~~-~~~~l~~-~~~v~~~~----~~~~~~~~~~l~~-~d~ii~~~~~~~~~~~l~~~~~L--k~I~~~~~G~   71 (133)
T PF00389_consen    1 ILITDPLPDE-EIERLEE-GFEVEFCD----SPSEEELAERLKD-ADAIIVGSGTPLTAEVLEAAPNL--KLISTAGAGV   71 (133)
T ss_dssp             EEESSS-SHH-HHHHHHH-TSEEEEES----SSSHHHHHHHHTT-ESEEEESTTSTBSHHHHHHHTT---SEEEESSSSC
T ss_pred             eEEeccCCHH-HHHHHHC-CceEEEeC----CCCHHHHHHHhCC-CeEEEEcCCCCcCHHHHhcccee--EEEEEccccc
Confidence            6888888765 5788888 66887765    3588999999995 99999987767999999999999  9999999999


Q ss_pred             CccChHHHhhCCcEEEecCCCCCcchHHHH
Q 026023           98 NNVDVNAANKYGIAVGNTPGVLTETTAELA  127 (244)
Q Consensus        98 d~id~~~~~~~gI~v~n~~~~~~~~vAE~~  127 (244)
                      ||+|++++.++||.|+|+||+++.+||||+
T Consensus        72 d~id~~~a~~~gI~V~n~~g~~~~aVAE~a  101 (133)
T PF00389_consen   72 DNIDLEAAKERGIPVTNVPGYNAEAVAEHA  101 (133)
T ss_dssp             TTB-HHHHHHTTSEEEE-TTTTHHHHHHHH
T ss_pred             CcccHHHHhhCeEEEEEeCCcCCcchhccc
Confidence            999999999999999999999999999999

The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=99.77  E-value=4.2e-18  Score=148.39  Aligned_cols=173  Identities=19%  Similarity=0.191  Sum_probs=125.2

Q ss_pred             HHHHHHhCCCeEEEeccCCC-----CCCHHHHHHH-hcCCccEEEeccC----------------ccccHHHHHHhhccC
Q 026023           29 WINLLIEQDCRVEICTQKKT-----ILSVEDIIAL-IGDKCDGVIGQLT----------------EDWGETLFAALSRAG   86 (244)
Q Consensus        29 ~~~~l~~~~~~v~~~~~~~~-----~~~~~~~~~~-~~~~ad~ii~~~~----------------~~~~~~~l~~~p~l~   86 (244)
                      ..+.|.+.|..|..+..+..     ......+.+. +. ++|+++...+                .++++++++.+|   
T Consensus        16 ~~~~l~~~g~~v~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~p~~~~~~~~~i~~~~~~~~~~l~~~~l~~~~---   91 (287)
T TIGR02853        16 LIRKLEELDAKISLIGFDQLEDGFTGAVKCELLELDLT-TLDVVILPVPGTSHDGKVATVFSNEKVVLTPELLESTK---   91 (287)
T ss_pred             HHHHHHHCCCEEEEEeccccccccccceeecchhhhhc-cCCEEEECCccccCCceEecccccCCccccHHHHHhcC---
Confidence            45667778888766544311     0012223333 44 5898886321                125678888776   


Q ss_pred             CcEEEEcccCCCccChH-HHhhCCcEEE------ecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCccc
Q 026023           87 GKAFSNMAVGYNNVDVN-AANKYGIAVG------NTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFV  159 (244)
Q Consensus        87 ~k~I~~~~aG~d~id~~-~~~~~gI~v~------n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~  159 (244)
                        .++...+|+++.+++ +++++||+|+      |++.+|+.++||+++++++..                        .
T Consensus        92 --~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~------------------------~  145 (287)
T TIGR02853        92 --GHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEH------------------------T  145 (287)
T ss_pred             --CCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHh------------------------c
Confidence              356678889999988 9999999999      998999999999999988852                        1


Q ss_pred             ccccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (244)
Q Consensus       160 ~~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~  239 (244)
                      +.++.|++++|+|+|+||+.+|+.| ++||++|.+++|++... +... .       .+   ......++++++++++|+
T Consensus       146 ~~~l~gk~v~IiG~G~iG~avA~~L-~~~G~~V~v~~R~~~~~-~~~~-~-------~g---~~~~~~~~l~~~l~~aDi  212 (287)
T TIGR02853       146 DFTIHGSNVMVLGFGRTGMTIARTF-SALGARVFVGARSSADL-ARIT-E-------MG---LIPFPLNKLEEKVAEIDI  212 (287)
T ss_pred             CCCCCCCEEEEEcChHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHH-H-------CC---CeeecHHHHHHHhccCCE
Confidence            2368999999999999999999998 89999999999987542 1110 0       01   112234578999999999


Q ss_pred             EEEeC
Q 026023          240 VCTLC  244 (244)
Q Consensus       240 Vvl~~  244 (244)
                      |++|+
T Consensus       213 Vint~  217 (287)
T TIGR02853       213 VINTI  217 (287)
T ss_pred             EEECC
Confidence            99985

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=99.59  E-value=5.8e-14  Score=122.98  Aligned_cols=174  Identities=17%  Similarity=0.136  Sum_probs=122.7

Q ss_pred             HHHHHHhCCCeEEEeccCCCCCC-----H-HHHHHHhcCCccEEEeccC----------------ccccHHHHHHhhccC
Q 026023           29 WINLLIEQDCRVEICTQKKTILS-----V-EDIIALIGDKCDGVIGQLT----------------EDWGETLFAALSRAG   86 (244)
Q Consensus        29 ~~~~l~~~~~~v~~~~~~~~~~~-----~-~~~~~~~~~~ad~ii~~~~----------------~~~~~~~l~~~p~l~   86 (244)
                      ..++|.+.|++|.....++....     . +...+.+. ++|+++...+                ..++++.++.+|+. 
T Consensus        17 ~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~~~~~~~~-~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~-   94 (296)
T PRK08306         17 LIRKLVELGAKVSLVGFDQLDHGFTGATKSSSLEEALS-DVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTPEH-   94 (296)
T ss_pred             HHHHHHHCCCEEEEEeccccccccCCceeeccHHHHhc-cCCEEEECCccccCCceeeccccccCCcchHHHHHhcCCC-
Confidence            46678888999876544432110     0 01123344 5999886411                12367899999997 


Q ss_pred             CcEEEEcccCCCccChHHHhhCCcEEEecCCC------CCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccc
Q 026023           87 GKAFSNMAVGYNNVDVNAANKYGIAVGNTPGV------LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVG  160 (244)
Q Consensus        87 ~k~I~~~~aG~d~id~~~~~~~gI~v~n~~~~------~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~  160 (244)
                       ..+. .|.+.++++ +.+.++||.+.+....      ++.++||.++...+..                        .+
T Consensus        95 -~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~~ns~~~aegav~~a~~~------------------------~~  147 (296)
T PRK08306         95 -CTIF-SGIANPYLK-ELAKETNRKLVELFERDDVAILNSIPTAEGAIMMAIEH------------------------TP  147 (296)
T ss_pred             -CEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhhhhccHhHHHHHHHHHHHh------------------------CC
Confidence             6444 588899987 7889999999988864      8999999988765430                        11


Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      .++.|++++|+|+|.+|+.+++.| +.+|++|.+++|++...  +....+       +   .......++.+.++++|+|
T Consensus       148 ~~l~g~kvlViG~G~iG~~~a~~L-~~~Ga~V~v~~r~~~~~--~~~~~~-------G---~~~~~~~~l~~~l~~aDiV  214 (296)
T PRK08306        148 ITIHGSNVLVLGFGRTGMTLARTL-KALGANVTVGARKSAHL--ARITEM-------G---LSPFHLSELAEEVGKIDII  214 (296)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHH-HHCCCEEEEEECCHHHH--HHHHHc-------C---CeeecHHHHHHHhCCCCEE
Confidence            357899999999999999999997 99999999999996542  111111       1   1222345788999999999


Q ss_pred             EEeC
Q 026023          241 CTLC  244 (244)
Q Consensus       241 vl~~  244 (244)
                      +.++
T Consensus       215 I~t~  218 (296)
T PRK08306        215 FNTI  218 (296)
T ss_pred             EECC
Confidence            9763

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=99.55  E-value=2.7e-14  Score=130.76  Aligned_cols=119  Identities=18%  Similarity=0.282  Sum_probs=90.0

Q ss_pred             cccCCCccC-hHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEE
Q 026023           93 MAVGYNNVD-VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI  171 (244)
Q Consensus        93 ~~aG~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIv  171 (244)
                      ..+|+..+- .......+|+|+|+|++++.+++|+++++++++.      +..+|.+           +..+.|++|||+
T Consensus       198 TttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~------d~~~R~~-----------~~~LaGKtVgVI  260 (476)
T PTZ00075        198 TTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLI------DGIFRAT-----------DVMIAGKTVVVC  260 (476)
T ss_pred             chHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHH------HHHHHhc-----------CCCcCCCEEEEE
Confidence            456765442 2222346899999999999999999999999988      3333333           246999999999


Q ss_pred             cCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       172 G~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      |+|+||+.+|+++ ++|||+|+++++.+....+...              .++ ...+++++++.||+|++|+
T Consensus       261 G~G~IGr~vA~rL-~a~Ga~ViV~e~dp~~a~~A~~--------------~G~-~~~~leell~~ADIVI~at  317 (476)
T PTZ00075        261 GYGDVGKGCAQAL-RGFGARVVVTEIDPICALQAAM--------------EGY-QVVTLEDVVETADIFVTAT  317 (476)
T ss_pred             CCCHHHHHHHHHH-HHCCCEEEEEeCCchhHHHHHh--------------cCc-eeccHHHHHhcCCEEEECC
Confidence            9999999999997 9999999999887654211110              111 2357999999999999874

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=99.09  E-value=2.2e-10  Score=100.30  Aligned_cols=68  Identities=31%  Similarity=0.358  Sum_probs=53.3

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      ..|+||||||||+|+||+.+|++| ++||++|+++++..+. .+. ...            .++ ...+++|++++||+|
T Consensus        12 ~~LkgKtVGIIG~GsIG~amA~nL-~d~G~~ViV~~r~~~s-~~~-A~~------------~G~-~v~sl~Eaak~ADVV   75 (335)
T PRK13403         12 ELLQGKTVAVIGYGSQGHAQAQNL-RDSGVEVVVGVRPGKS-FEV-AKA------------DGF-EVMSVSEAVRTAQVV   75 (335)
T ss_pred             hhhCcCEEEEEeEcHHHHHHHHHH-HHCcCEEEEEECcchh-hHH-HHH------------cCC-EECCHHHHHhcCCEE
Confidence            469999999999999999999998 9999999999876432 111 111            011 224899999999999


Q ss_pred             EEeC
Q 026023          241 CTLC  244 (244)
Q Consensus       241 vl~~  244 (244)
                      ++||
T Consensus        76 ~llL   79 (335)
T PRK13403         76 QMLL   79 (335)
T ss_pred             EEeC
Confidence            9986

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=98.88  E-value=5.3e-08  Score=89.02  Aligned_cols=119  Identities=18%  Similarity=0.259  Sum_probs=77.0

Q ss_pred             EcccCCCccC-hHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEE
Q 026023           92 NMAVGYNNVD-VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGV  170 (244)
Q Consensus        92 ~~~aG~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgI  170 (244)
                      -..+|+..+- .....+.+++|.|.+..+....-|...+.-               ++.|.....  .....+.|++|+|
T Consensus       155 eTttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt~---------------~s~~~ai~r--at~~~l~Gk~VlV  217 (425)
T PRK05476        155 ETTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFDNRYGTG---------------ESLLDGIKR--ATNVLIAGKVVVV  217 (425)
T ss_pred             cchHHHHHHHHHHHcCCCCCCEEecCCcccCccccccHHHH---------------hhhHHHHHH--hccCCCCCCEEEE
Confidence            3566765542 222235689999999887766444222211               122211000  1123489999999


Q ss_pred             EcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       171 vG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      +|+|.||+.+|+++ +++|++|+++++.+....+...              .++ ...+++++++.+|+|+.+
T Consensus       218 iG~G~IG~~vA~~l-r~~Ga~ViV~d~dp~ra~~A~~--------------~G~-~v~~l~eal~~aDVVI~a  274 (425)
T PRK05476        218 AGYGDVGKGCAQRL-RGLGARVIVTEVDPICALQAAM--------------DGF-RVMTMEEAAELGDIFVTA  274 (425)
T ss_pred             ECCCHHHHHHHHHH-HhCCCEEEEEcCCchhhHHHHh--------------cCC-EecCHHHHHhCCCEEEEC
Confidence            99999999999997 9999999999998754222110              011 134789999999999865

>TIGR00936 ahcY adenosylhomocysteinase

Probab=98.78  E-value=2.3e-07  Score=84.36  Aligned_cols=67  Identities=27%  Similarity=0.343  Sum_probs=51.5

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      ..+.|++|+|+|+|.||+.+|+++ ++||++|+++++.+....+...              .+. ...+++++++.+|+|
T Consensus       191 ~~l~Gk~VvViG~G~IG~~vA~~a-k~~Ga~ViV~d~dp~r~~~A~~--------------~G~-~v~~leeal~~aDVV  254 (406)
T TIGR00936       191 LLIAGKTVVVAGYGWCGKGIAMRA-RGMGARVIVTEVDPIRALEAAM--------------DGF-RVMTMEEAAKIGDIF  254 (406)
T ss_pred             CCCCcCEEEEECCCHHHHHHHHHH-hhCcCEEEEEeCChhhHHHHHh--------------cCC-EeCCHHHHHhcCCEE
Confidence            358999999999999999999997 9999999999887644222110              111 234688999999998


Q ss_pred             EEe
Q 026023          241 CTL  243 (244)
Q Consensus       241 vl~  243 (244)
                      +..
T Consensus       255 Ita  257 (406)
T TIGR00936       255 ITA  257 (406)
T ss_pred             EEC
Confidence            764

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=98.76  E-value=1.9e-08  Score=79.92  Aligned_cols=67  Identities=27%  Similarity=0.503  Sum_probs=48.5

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      ..+.||++.|+|||.+|+.+|+.| +++|++|..++..|....+...+.|               ...+++++++++|++
T Consensus        19 ~~l~Gk~vvV~GYG~vG~g~A~~l-r~~Ga~V~V~e~DPi~alqA~~dGf---------------~v~~~~~a~~~adi~   82 (162)
T PF00670_consen   19 LMLAGKRVVVIGYGKVGKGIARAL-RGLGARVTVTEIDPIRALQAAMDGF---------------EVMTLEEALRDADIF   82 (162)
T ss_dssp             S--TTSEEEEE--SHHHHHHHHHH-HHTT-EEEEE-SSHHHHHHHHHTT----------------EEE-HHHHTTT-SEE
T ss_pred             eeeCCCEEEEeCCCcccHHHHHHH-hhCCCEEEEEECChHHHHHhhhcCc---------------EecCHHHHHhhCCEE
Confidence            468999999999999999999998 9999999999999876555544432               335899999999998


Q ss_pred             EEe
Q 026023          241 CTL  243 (244)
Q Consensus       241 vl~  243 (244)
                      +.+
T Consensus        83 vta   85 (162)
T PF00670_consen   83 VTA   85 (162)
T ss_dssp             EE-
T ss_pred             EEC
Confidence            864

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PLN02494 adenosylhomocysteinase

Probab=98.74  E-value=2.9e-08  Score=91.16  Aligned_cols=67  Identities=19%  Similarity=0.362  Sum_probs=52.1

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      ..+.|++|+|+|+|.||+.+|+++ ++|||+|+++++++....+....            .+   ...+++++++.+|+|
T Consensus       250 i~LaGKtVvViGyG~IGr~vA~~a-ka~Ga~VIV~e~dp~r~~eA~~~------------G~---~vv~leEal~~ADVV  313 (477)
T PLN02494        250 VMIAGKVAVICGYGDVGKGCAAAM-KAAGARVIVTEIDPICALQALME------------GY---QVLTLEDVVSEADIF  313 (477)
T ss_pred             CccCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCchhhHHHHhc------------CC---eeccHHHHHhhCCEE
Confidence            357999999999999999999997 99999999999987542221111            11   123789999999999


Q ss_pred             EEe
Q 026023          241 CTL  243 (244)
Q Consensus       241 vl~  243 (244)
                      +.+
T Consensus       314 I~t  316 (477)
T PLN02494        314 VTT  316 (477)
T ss_pred             EEC
Confidence            864

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=98.56  E-value=1.8e-07  Score=82.81  Aligned_cols=69  Identities=25%  Similarity=0.296  Sum_probs=53.1

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      ..|.|++|||||+|++|+.+|+.| +.+|++|+++++......+. ...            .++. ..+..+++++||+|
T Consensus        13 ~~L~gktIgIIG~GsmG~AlA~~L-~~sG~~Vvv~~r~~~~s~~~-A~~------------~G~~-~~s~~eaa~~ADVV   77 (330)
T PRK05479         13 SLIKGKKVAIIGYGSQGHAHALNL-RDSGVDVVVGLREGSKSWKK-AEA------------DGFE-VLTVAEAAKWADVI   77 (330)
T ss_pred             hhhCCCEEEEEeeHHHHHHHHHHH-HHCCCEEEEEECCchhhHHH-HHH------------CCCe-eCCHHHHHhcCCEE
Confidence            468999999999999999999998 89999999887764432221 111            1122 24899999999999


Q ss_pred             EEeC
Q 026023          241 CTLC  244 (244)
Q Consensus       241 vl~~  244 (244)
                      ++++
T Consensus        78 vLaV   81 (330)
T PRK05479         78 MILL   81 (330)
T ss_pred             EEcC
Confidence            9985

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=98.52  E-value=3.1e-06  Score=77.32  Aligned_cols=68  Identities=21%  Similarity=0.379  Sum_probs=51.7

Q ss_pred             ccccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (244)
Q Consensus       160 ~~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~  239 (244)
                      +..+.|++|+|+|+|.||+.+|+++ +++|++|+++++++......  ..            .++ ...++++.++.+|+
T Consensus       197 ~~~l~GktVvViG~G~IG~~va~~a-k~~Ga~ViV~d~d~~R~~~A--~~------------~G~-~~~~~~e~v~~aDV  260 (413)
T cd00401         197 DVMIAGKVAVVAGYGDVGKGCAQSL-RGQGARVIVTEVDPICALQA--AM------------EGY-EVMTMEEAVKEGDI  260 (413)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECChhhHHHH--Hh------------cCC-EEccHHHHHcCCCE
Confidence            3468999999999999999999996 99999999999886542111  11            111 12357889999999


Q ss_pred             EEEe
Q 026023          240 VCTL  243 (244)
Q Consensus       240 Vvl~  243 (244)
                      |+.+
T Consensus       261 VI~a  264 (413)
T cd00401         261 FVTT  264 (413)
T ss_pred             EEEC
Confidence            9865

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=98.47  E-value=4.8e-07  Score=79.93  Aligned_cols=67  Identities=28%  Similarity=0.364  Sum_probs=49.6

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       163 l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      |.|++|||||+|++|+++|+.| +.+|++|+++++...+..+... .            .++. ..+..+++++||+|++
T Consensus         1 l~~kkIgiIG~G~mG~AiA~~L-~~sG~~Viv~~~~~~~~~~~a~-~------------~Gv~-~~s~~ea~~~ADiVvL   65 (314)
T TIGR00465         1 LKGKTVAIIGYGSQGHAQALNL-RDSGLNVIVGLRKGGASWKKAT-E------------DGFK-VGTVEEAIPQADLIMN   65 (314)
T ss_pred             CCcCEEEEEeEcHHHHHHHHHH-HHCCCeEEEEECcChhhHHHHH-H------------CCCE-ECCHHHHHhcCCEEEE
Confidence            5789999999999999999998 8999998876655433222211 0            1111 2468899999999999


Q ss_pred             eC
Q 026023          243 LC  244 (244)
Q Consensus       243 ~~  244 (244)
                      ++
T Consensus        66 aV   67 (314)
T TIGR00465        66 LL   67 (314)
T ss_pred             eC
Confidence            85

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=98.39  E-value=2e-06  Score=71.29  Aligned_cols=68  Identities=24%  Similarity=0.350  Sum_probs=49.5

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh-hCCE
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADV  239 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~sD~  239 (244)
                      .++.|++++|+|+|++|+.+|++| ..+|++|+++|+++.. .+++.+.+            +... .+.++++. +||+
T Consensus        24 ~~l~gk~v~I~G~G~vG~~~A~~L-~~~G~~Vvv~D~~~~~-~~~~~~~~------------g~~~-v~~~~l~~~~~Dv   88 (200)
T cd01075          24 DSLEGKTVAVQGLGKVGYKLAEHL-LEEGAKLIVADINEEA-VARAAELF------------GATV-VAPEEIYSVDADV   88 (200)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCHHH-HHHHHHHc------------CCEE-EcchhhccccCCE
Confidence            468999999999999999999998 8999999999998643 22222211            1111 23456665 7999


Q ss_pred             EEEe
Q 026023          240 VCTL  243 (244)
Q Consensus       240 Vvl~  243 (244)
                      ++.+
T Consensus        89 ~vp~   92 (200)
T cd01075          89 FAPC   92 (200)
T ss_pred             EEec
Confidence            9854

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PLN02712 arogenate dehydrogenase

Probab=98.39  E-value=9.6e-07  Score=85.39  Aligned_cols=71  Identities=14%  Similarity=0.138  Sum_probs=54.3

Q ss_pred             ccccccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh-h
Q 026023          158 FVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-E  236 (244)
Q Consensus       158 ~~~~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~  236 (244)
                      ..+.++.+++|||||+|.||+.+|+.| +.+|.+|.+|+++....  . ...            .++....++++++. .
T Consensus       362 ~~~~~~~~~kIgIIGlG~mG~slA~~L-~~~G~~V~~~dr~~~~~--~-a~~------------~Gv~~~~~~~el~~~~  425 (667)
T PLN02712        362 GCVNDGSKLKIAIVGFGNFGQFLAKTM-VKQGHTVLAYSRSDYSD--E-AQK------------LGVSYFSDADDLCEEH  425 (667)
T ss_pred             hccCCCCCCEEEEEecCHHHHHHHHHH-HHCcCEEEEEECChHHH--H-HHH------------cCCeEeCCHHHHHhcC
Confidence            345678999999999999999999998 89999999999985321  1 111            11223468999886 5


Q ss_pred             CCEEEEeC
Q 026023          237 ADVVCTLC  244 (244)
Q Consensus       237 sD~Vvl~~  244 (244)
                      +|+|++++
T Consensus       426 aDvVILav  433 (667)
T PLN02712        426 PEVILLCT  433 (667)
T ss_pred             CCEEEECC
Confidence            99999985

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.38  E-value=1.2e-05  Score=69.92  Aligned_cols=144  Identities=19%  Similarity=0.220  Sum_probs=91.4

Q ss_pred             HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccH-HHHHHhhccCCcEEEEcccCCCccChHH
Q 026023           33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA  104 (244)
Q Consensus        33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~-~~l~~~p~l~~k~I~~~~aG~d~id~~~  104 (244)
                      .++.|++++.+..++ ..+++++.+.+..     .+|++++..+  ..+++ .+++..+..  |=       +|.+-...
T Consensus        57 ~~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i~~~I~p~--KD-------VDGl~~~n  126 (285)
T PRK14189         57 CEDNGFHSLKDRYPA-DLSEAELLARIDELNRDPKIHGILVQLPLPKHIDSHKVIEAIAPE--KD-------VDGFHVAN  126 (285)
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhhcCcc--cC-------cccCChhh
Confidence            355588877666543 3477777766542     4678888643  23443 355555444  32       22221111


Q ss_pred             HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCChH-HHHHHHH
Q 026023          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI-GSAYARM  183 (244)
Q Consensus       105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~I-G~~vA~~  183 (244)
                      .   |-...+. ..+.+.++.-++.++=.                         .+.++.||++.|+|.|.| |+-+|.+
T Consensus       127 ~---g~l~~~~-~~~~PcTp~aii~lL~~-------------------------~~i~l~Gk~vvViGrs~iVGkPla~l  177 (285)
T PRK14189        127 A---GALMTGQ-PLFRPCTPYGVMKMLES-------------------------IGIPLRGAHAVVIGRSNIVGKPMAML  177 (285)
T ss_pred             h---hHhhCCC-CCCcCCCHHHHHHHHHH-------------------------cCCCCCCCEEEEECCCCccHHHHHHH
Confidence            1   1111122 23456666665554322                         235699999999999999 9999999


Q ss_pred             HhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       184 la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      | ...|++|..+..+                            ..+|.+.+++||+|+..+
T Consensus       178 L-~~~~atVt~~hs~----------------------------t~~l~~~~~~ADIVV~av  209 (285)
T PRK14189        178 L-LQAGATVTICHSK----------------------------TRDLAAHTRQADIVVAAV  209 (285)
T ss_pred             H-HHCCCEEEEecCC----------------------------CCCHHHHhhhCCEEEEcC
Confidence            9 8999999987643                            147999999999999863

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=98.37  E-value=1.1e-06  Score=70.38  Aligned_cols=64  Identities=30%  Similarity=0.351  Sum_probs=48.9

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      ++|||||+|+.|..+|+.| ..-|.+|.+|||++... +++.+             .+....+++.|+.++||+|++++
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L-~~~g~~v~~~d~~~~~~-~~~~~-------------~g~~~~~s~~e~~~~~dvvi~~v   65 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNL-AKAGYEVTVYDRSPEKA-EALAE-------------AGAEVADSPAEAAEQADVVILCV   65 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHH-HHTTTEEEEEESSHHHH-HHHHH-------------TTEEEESSHHHHHHHBSEEEE-S
T ss_pred             CEEEEEchHHHHHHHHHHH-HhcCCeEEeeccchhhh-hhhHH-------------hhhhhhhhhhhHhhcccceEeec
Confidence            4899999999999999999 78899999999987542 22221             12445689999999999999875

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.30  E-value=2.4e-05  Score=68.05  Aligned_cols=144  Identities=15%  Similarity=0.194  Sum_probs=90.8

Q ss_pred             HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccHH-HHHHhhccCCcEEEEcccCCCccChHH
Q 026023           33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVNA  104 (244)
Q Consensus        33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~~-~l~~~p~l~~k~I~~~~aG~d~id~~~  104 (244)
                      .++.|++.+.+..++ ..+++++.+.+..     +++++++..+  ..+++. +++..+..  |=       +|.+....
T Consensus        57 a~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~d~~V~GIivq~Plp~~i~~~~i~~~I~p~--KD-------VDGl~~~n  126 (286)
T PRK14175         57 AEKIGMISEIVHLEE-TATEEEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINPE--KD-------VDGFHPIN  126 (286)
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cC-------cccCCccc
Confidence            344577776665544 3477777766542     4578888643  234443 44444443  32       22221110


Q ss_pred             HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHHH
Q 026023          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM  183 (244)
Q Consensus       105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~~  183 (244)
                      .   |-...+. ..+.+.++.-++.++-.                         .+.++.|+++.|+|.|. +|+.+|.+
T Consensus       127 ~---g~l~~~~-~~~~PcTp~ai~~ll~~-------------------------~~i~l~Gk~vvVIGrs~~VG~pla~l  177 (286)
T PRK14175        127 I---GKLYIDE-QTFVPCTPLGIMEILKH-------------------------ADIDLEGKNAVVIGRSHIVGQPVSKL  177 (286)
T ss_pred             h---HhHhcCC-CCCCCCcHHHHHHHHHH-------------------------cCCCCCCCEEEEECCCchhHHHHHHH
Confidence            0   1111111 23456666666554432                         12469999999999999 99999999


Q ss_pred             HhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       184 la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      | ...|++|..++++.                            .+|.+.+++||+|+..+
T Consensus       178 L-~~~gatVtv~~s~t----------------------------~~l~~~~~~ADIVIsAv  209 (286)
T PRK14175        178 L-LQKNASVTILHSRS----------------------------KDMASYLKDADVIVSAV  209 (286)
T ss_pred             H-HHCCCeEEEEeCCc----------------------------hhHHHHHhhCCEEEECC
Confidence            9 89999999988642                            36899999999999764

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.27  E-value=2.5e-05  Score=68.28  Aligned_cols=143  Identities=20%  Similarity=0.208  Sum_probs=90.5

Q ss_pred             HhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccHH-HHHHhhccCCcEEEEcccCCCccChHHH
Q 026023           34 IEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVNAA  105 (244)
Q Consensus        34 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~~-~l~~~p~l~~k~I~~~~aG~d~id~~~~  105 (244)
                      ++.|++.+....++ ..+++++.+.+..     .+|++++..+  ..+++. +++..+..  |       =+|.+.....
T Consensus        59 ~~~Gi~~~~~~l~~-~~t~~~l~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--K-------DVDGl~~~N~  128 (301)
T PRK14194         59 EEAGIRSLEHRLPA-DTSQARLLALIAELNADPSVNGILLQLPLPAHIDEARVLQAINPL--K-------DVDGFHSENV  128 (301)
T ss_pred             HHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhccCch--h-------ccCccChhhh
Confidence            44577776655543 3477777776532     4678888643  234443 44444433  3       2222221111


Q ss_pred             hhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCC-hHHHHHHHHH
Q 026023          106 NKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYARMM  184 (244)
Q Consensus       106 ~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G-~IG~~vA~~l  184 (244)
                         |-...+ ...+.+.++.-++.++=.                         .+.++.||+|+|+|.| .+|+.+|.+|
T Consensus       129 ---g~l~~~-~~~~~PcTp~aii~lL~~-------------------------~~i~l~Gk~V~vIG~s~ivG~PmA~~L  179 (301)
T PRK14194        129 ---GGLSQG-RDVLTPCTPSGCLRLLED-------------------------TCGDLTGKHAVVIGRSNIVGKPMAALL  179 (301)
T ss_pred             ---hHHhcC-CCCCCCCcHHHHHHHHHH-------------------------hCCCCCCCEEEEECCCCccHHHHHHHH
Confidence               111111 123456677666654432                         2357999999999996 9999999999


Q ss_pred             hccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          185 VEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       185 a~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                       ..-|++|..++++.                            .++.++.++||+|++++
T Consensus       180 -~~~gatVtv~~~~t----------------------------~~l~e~~~~ADIVIsav  210 (301)
T PRK14194        180 -LQAHCSVTVVHSRS----------------------------TDAKALCRQADIVVAAV  210 (301)
T ss_pred             -HHCCCEEEEECCCC----------------------------CCHHHHHhcCCEEEEec
Confidence             78899999998652                            36889999999999864

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=98.24  E-value=3.9e-06  Score=60.80  Aligned_cols=64  Identities=28%  Similarity=0.382  Sum_probs=47.7

Q ss_pred             EEEEEcCChHHHHHHHHHhccCC---cEEE-EEcCCcchHHHHHHhhhhhhhhcCCCCCccccccC-CHHHHhhhCCEEE
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFK---MNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS-SMDEVLREADVVC  241 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG---~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~ell~~sD~Vv  241 (244)
                      ++||+|+|++|+.+++.| ..-|   .+|. +++|++.. .++..+.+            +..... +..|++++||+|+
T Consensus         1 kI~iIG~G~mg~al~~~l-~~~g~~~~~v~~~~~r~~~~-~~~~~~~~------------~~~~~~~~~~~~~~~advvi   66 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGL-LASGIKPHEVIIVSSRSPEK-AAELAKEY------------GVQATADDNEEAAQEADVVI   66 (96)
T ss_dssp             EEEEESTSHHHHHHHHHH-HHTTS-GGEEEEEEESSHHH-HHHHHHHC------------TTEEESEEHHHHHHHTSEEE
T ss_pred             CEEEECCCHHHHHHHHHH-HHCCCCceeEEeeccCcHHH-HHHHHHhh------------ccccccCChHHhhccCCEEE
Confidence            699999999999999998 7899   8999 55888754 23333322            111223 7999999999999


Q ss_pred             EeC
Q 026023          242 TLC  244 (244)
Q Consensus       242 l~~  244 (244)
                      +++
T Consensus        67 lav   69 (96)
T PF03807_consen   67 LAV   69 (96)
T ss_dssp             E-S
T ss_pred             EEE
Confidence            985

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PLN02256 arogenate dehydrogenase

Probab=98.21  E-value=4.3e-06  Score=73.67  Aligned_cols=65  Identities=14%  Similarity=0.177  Sum_probs=49.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh-hhCCEEEE
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVVCT  242 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~sD~Vvl  242 (244)
                      .+++|||+|+|.||+.+|+.| +..|.+|.+++++.....+   ..+            ++....++++++ ..+|+|++
T Consensus        35 ~~~kI~IIG~G~mG~slA~~L-~~~G~~V~~~d~~~~~~~a---~~~------------gv~~~~~~~e~~~~~aDvVil   98 (304)
T PLN02256         35 RKLKIGIVGFGNFGQFLAKTF-VKQGHTVLATSRSDYSDIA---AEL------------GVSFFRDPDDFCEEHPDVVLL   98 (304)
T ss_pred             CCCEEEEEeeCHHHHHHHHHH-HhCCCEEEEEECccHHHHH---HHc------------CCeeeCCHHHHhhCCCCEEEE
Confidence            667999999999999999998 8899999999998632111   111            122346788887 47999999


Q ss_pred             eC
Q 026023          243 LC  244 (244)
Q Consensus       243 ~~  244 (244)
                      ++
T Consensus        99 av  100 (304)
T PLN02256         99 CT  100 (304)
T ss_pred             ec
Confidence            75

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.14  E-value=5.7e-06  Score=64.18  Aligned_cols=73  Identities=26%  Similarity=0.343  Sum_probs=56.6

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCcE-EEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      ++.|+++.|+|.|.+|+.++..| ...|++ |..++|+... .++..+.+       ....+....++++.+.+.++|+|
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L-~~~g~~~i~i~nRt~~r-a~~l~~~~-------~~~~~~~~~~~~~~~~~~~~Div   79 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAAL-AALGAKEITIVNRTPER-AEALAEEF-------GGVNIEAIPLEDLEEALQEADIV   79 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHH-HHTTSSEEEEEESSHHH-HHHHHHHH-------TGCSEEEEEGGGHCHHHHTESEE
T ss_pred             CcCCCEEEEECCHHHHHHHHHHH-HHcCCCEEEEEECCHHH-HHHHHHHc-------CccccceeeHHHHHHHHhhCCeE
Confidence            68999999999999999999998 799997 9999998754 33333322       22233455667899999999999


Q ss_pred             EEe
Q 026023          241 CTL  243 (244)
Q Consensus       241 vl~  243 (244)
                      +.+
T Consensus        80 I~a   82 (135)
T PF01488_consen   80 INA   82 (135)
T ss_dssp             EE-
T ss_pred             EEe
Confidence            875

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.11  E-value=7.2e-05  Score=64.98  Aligned_cols=144  Identities=18%  Similarity=0.251  Sum_probs=91.0

Q ss_pred             HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccH-HHHHHhhccCCcEEEEcccCCCccChHH
Q 026023           33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA  104 (244)
Q Consensus        33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~-~~l~~~p~l~~k~I~~~~aG~d~id~~~  104 (244)
                      .++.|++.+.+..++ ..+++++.+.+..     .+|++++..+  ..+++ .+++..+..  |=       +|.+....
T Consensus        57 ~~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~d~~V~GIivqlPlp~~i~~~~i~~~I~p~--KD-------VDGl~~~N  126 (284)
T PRK14179         57 ALAAGFKSEVVRLPE-TISQEELLDLIERYNQDPTWHGILVQLPLPKHINEEKILLAIDPK--KD-------VDGFHPMN  126 (284)
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcc--cc-------ccccCHhh
Confidence            355688777666554 3577777766542     4578888743  23443 344444433  32       22221111


Q ss_pred             HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcC-ChHHHHHHHH
Q 026023          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYARM  183 (244)
Q Consensus       105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~-G~IG~~vA~~  183 (244)
                      .   |-...+. ..+.++++.-++.++-.                         .+.++.||+++|+|. |-.|+-+|.+
T Consensus       127 ~---g~l~~~~-~~~~PcTp~avi~lL~~-------------------------~~i~l~Gk~v~vIG~S~ivG~Pla~l  177 (284)
T PRK14179        127 T---GHLWSGR-PVMIPCTPAGIMEMFRE-------------------------YNVELEGKHAVVIGRSNIVGKPMAQL  177 (284)
T ss_pred             H---HHHhCCC-CCCcCCCHHHHHHHHHH-------------------------hCCCCCCCEEEEECCCCcCcHHHHHH
Confidence            1   1111122 23567777776654432                         235699999999999 9999999999


Q ss_pred             HhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       184 la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      | ..-|++|..+...                            ..++.+..++||+|+..+
T Consensus       178 L-~~~gatVtv~~s~----------------------------t~~l~~~~~~ADIVI~av  209 (284)
T PRK14179        178 L-LDKNATVTLTHSR----------------------------TRNLAEVARKADILVVAI  209 (284)
T ss_pred             H-HHCCCEEEEECCC----------------------------CCCHHHHHhhCCEEEEec
Confidence            9 7889999998321                            137999999999999864

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=98.08  E-value=7.1e-06  Score=71.63  Aligned_cols=63  Identities=22%  Similarity=0.294  Sum_probs=49.0

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +|||||+|.+|+.+|+.| ...|.+|.+|||++.. .+...+        .     +.....+..+++++||+|++++
T Consensus         1 ~IgvIG~G~mG~~iA~~l-~~~G~~V~~~dr~~~~-~~~~~~--------~-----g~~~~~~~~~~~~~aDivi~~v   63 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINL-AKAGYQLHVTTIGPEV-ADELLA--------A-----GAVTAETARQVTEQADVIFTMV   63 (291)
T ss_pred             CEEEEEecHHHHHHHHHH-HHCCCeEEEEcCCHHH-HHHHHH--------C-----CCcccCCHHHHHhcCCEEEEec
Confidence            489999999999999998 7899999999998744 222111        1     1223468899999999999985

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.08  E-value=0.00048  Score=64.60  Aligned_cols=155  Identities=19%  Similarity=0.119  Sum_probs=90.9

Q ss_pred             HHHHHHhCCCeEEEecc--CCCCCCHHHHHHH---------hcCCccEEEeccCccccHHHHHHhhccCCcEEEEcccCC
Q 026023           29 WINLLIEQDCRVEICTQ--KKTILSVEDIIAL---------IGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGY   97 (244)
Q Consensus        29 ~~~~l~~~~~~v~~~~~--~~~~~~~~~~~~~---------~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~aG~   97 (244)
                      ..++|.+.|++|.+-..  ....+++++..++         +. .+|+|+.- . +++++.++.+++ |-.+|+...-.-
T Consensus        21 ~v~~L~k~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~~~-~adiIlkV-~-~P~~~e~~~l~~-g~tli~~l~p~~   96 (511)
T TIGR00561        21 TVQQLLKLGFDVLVETGAGAKASFADRAFESAGAGIVDGTLFW-QSDIILKV-N-APSDAEIAELPA-GKALVSFIWPAQ   96 (511)
T ss_pred             HHHHHHhCCCEEEEECCCCcCCCcCHHHHHHcCCEEecccchh-cCCEEEEe-C-CCCHHHHHhcCC-CCEEEEEcCccC
Confidence            36677788888865433  1224566666642         12 36766632 2 234555677766 435666665555


Q ss_pred             CccChHHHhhCCcEEEecCCCC--C--------cchHHHHHHHHHHHHhChHHHHHHHHc---CCCCCCCCCcccccccC
Q 026023           98 NNVDVNAANKYGIAVGNTPGVL--T--------ETTAELAASLSLAAARRIVEADEFMRA---GLYDGWLPNLFVGNLLK  164 (244)
Q Consensus        98 d~id~~~~~~~gI~v~n~~~~~--~--------~~vAE~~l~~~L~~~R~~~~~~~~~~~---~~w~~~~~~~~~~~~l~  164 (244)
                      |.=.++.+.+++|++...-.+.  .        .++|+.+      -.|-+....+..-+   |.     .. .. ..+.
T Consensus        97 n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iA------Gy~Avi~Aa~~lgr~~~g~-----~t-aa-g~vp  163 (511)
T TIGR00561        97 NPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIA------GYRAIIEAAHEFGRFFTGQ-----IT-AA-GKVP  163 (511)
T ss_pred             CHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHH------HHHHHHHHHHHhhhhcCCc-----ee-cC-CCCC
Confidence            5445677888999887644222  1        2233322      11211111111111   11     00 01 1456


Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +.++.|+|+|.+|...++.+ +.+|++|.++|+++..
T Consensus       164 ~akVlViGaG~iGl~Aa~~a-k~lGA~V~v~d~~~~r  199 (511)
T TIGR00561       164 PAKVLVIGAGVAGLAAIGAA-NSLGAIVRAFDTRPEV  199 (511)
T ss_pred             CCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            78999999999999999996 9999999999998754

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.07  E-value=0.00012  Score=64.06  Aligned_cols=143  Identities=20%  Similarity=0.194  Sum_probs=89.4

Q ss_pred             HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccH-HHHHHhhccCCcEEEEcccCCCccChHH
Q 026023           33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA  104 (244)
Q Consensus        33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~-~~l~~~p~l~~k~I~~~~aG~d~id~~~  104 (244)
                      .++.|++++....++ ..+++|+.+.+..     .++++++..+  ..+++ .+++..+..  |       =+|.+-...
T Consensus        57 a~~~Gi~~~~~~l~~-~~~~~el~~~i~~lN~d~~V~GIlvq~Plp~~~~~~~i~~~I~p~--K-------DVDGl~~~n  126 (296)
T PRK14188         57 TKEAGMASFEHKLPA-DTSQAELLALIARLNADPAIHGILVQLPLPKHLDSEAVIQAIDPE--K-------DVDGLHVVN  126 (296)
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCHHHHHhccCcc--c-------ccccCChhh
Confidence            345577776555433 3577877776542     4578888643  23443 344444443  3       223222111


Q ss_pred             HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEc-CChHHHHHHHH
Q 026023          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG-AGRIGSAYARM  183 (244)
Q Consensus       105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG-~G~IG~~vA~~  183 (244)
                      .   |-...+. ..+.++++.-++.++=.                         .+.++.||+|+|+| .|..|+.+|.+
T Consensus       127 ~---g~l~~~~-~~~~PcTp~ai~~ll~~-------------------------~~i~~~Gk~V~viGrs~~mG~PmA~~  177 (296)
T PRK14188        127 A---GRLATGE-TALVPCTPLGCMMLLRR-------------------------VHGDLSGLNAVVIGRSNLVGKPMAQL  177 (296)
T ss_pred             H---HHHhCCC-CCCcCCCHHHHHHHHHH-------------------------hCCCCCCCEEEEEcCCcchHHHHHHH
Confidence            1   1111111 23567777766654422                         12469999999999 99999999999


Q ss_pred             HhccCCcEEEEEc-CCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          184 MVEGFKMNLIYYD-LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       184 la~afG~~V~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      | ..-|+.|..++ |+                             .+++++.++||+|++++
T Consensus       178 L-~~~g~tVtv~~~rT-----------------------------~~l~e~~~~ADIVIsav  209 (296)
T PRK14188        178 L-LAANATVTIAHSRT-----------------------------RDLPAVCRRADILVAAV  209 (296)
T ss_pred             H-HhCCCEEEEECCCC-----------------------------CCHHHHHhcCCEEEEec
Confidence            9 67899999995 43                             25889999999999864

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=98.06  E-value=1e-05  Score=70.67  Aligned_cols=64  Identities=25%  Similarity=0.371  Sum_probs=49.4

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      ++|||+|+|.+|+.+|+.| ...|.+|.+|||++... ++.. .            .+.....++++++++||+|++++
T Consensus         3 ~~IgviG~G~mG~~~a~~l-~~~g~~v~~~d~~~~~~-~~~~-~------------~g~~~~~~~~e~~~~~d~vi~~v   66 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNL-LKAGYSLVVYDRNPEAV-AEVI-A------------AGAETASTAKAVAEQCDVIITML   66 (296)
T ss_pred             ceEEEEccCHHHHHHHHHH-HHCCCeEEEEcCCHHHH-HHHH-H------------CCCeecCCHHHHHhcCCEEEEeC
Confidence            4799999999999999998 78999999999987542 2111 0            11223468999999999999875

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.05  E-value=0.00015  Score=63.03  Aligned_cols=143  Identities=15%  Similarity=0.183  Sum_probs=90.7

Q ss_pred             HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccH-HHHHHhhccCCcEEEEcccCCCccChHH
Q 026023           33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA  104 (244)
Q Consensus        33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~-~~l~~~p~l~~k~I~~~~aG~d~id~~~  104 (244)
                      .++.|++.+....++ ..+++++.+.+..     ++|++++..+  ..+++ .+++..+..  |=       +|.+-...
T Consensus        63 ~~~~Gi~~~~~~l~~-~~~~~el~~~I~~LN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--KD-------VDGl~~~N  132 (287)
T PRK14176         63 CERVGIRAEDQFLPA-DTTQEELLELIDSLNKRKDVHGILLQLPLPKHLDPQEAMEAIDPA--KD-------ADGFHPYN  132 (287)
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc--cc-------ccccChhh
Confidence            345588776665544 3477777765543     4678888743  23443 344444443  32       22221110


Q ss_pred             HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHHH
Q 026023          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM  183 (244)
Q Consensus       105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~~  183 (244)
                         .|-...+.+ .+.+.+++-++.++=.                         .+.++.||++.|+|.|+ +|+-+|.+
T Consensus       133 ---~g~l~~g~~-~~~PcTp~av~~ll~~-------------------------~~i~l~Gk~vvViGrs~iVGkPla~l  183 (287)
T PRK14176        133 ---MGKLMIGDE-GLVPCTPHGVIRALEE-------------------------YGVDIEGKNAVIVGHSNVVGKPMAAM  183 (287)
T ss_pred             ---hhhHhcCCC-CCCCCcHHHHHHHHHH-------------------------cCCCCCCCEEEEECCCcccHHHHHHH
Confidence               111112222 3566777766654422                         23569999999999999 99999999


Q ss_pred             HhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       184 la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      | ..-|+.|..++...                            .+|.+..++||+|+..
T Consensus       184 L-~~~~atVtv~hs~T----------------------------~~l~~~~~~ADIvv~A  214 (287)
T PRK14176        184 L-LNRNATVSVCHVFT----------------------------DDLKKYTLDADILVVA  214 (287)
T ss_pred             H-HHCCCEEEEEeccC----------------------------CCHHHHHhhCCEEEEc
Confidence            9 89999999888531                            4799999999999875

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.05  E-value=0.00013  Score=63.37  Aligned_cols=144  Identities=17%  Similarity=0.191  Sum_probs=90.3

Q ss_pred             HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccH-HHHHHhhccCCcEEEEcccCCCccChHH
Q 026023           33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA  104 (244)
Q Consensus        33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~-~~l~~~p~l~~k~I~~~~aG~d~id~~~  104 (244)
                      .++.|++.+.+..++ ..+++|+.+.+..     +++++++..+  ..+++ .+++..+..  |=       +|.+-...
T Consensus        58 a~~~Gi~~~~~~l~~-~~s~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~--KD-------VDGl~~~n  127 (285)
T PRK10792         58 CEEVGFVSRSYDLPE-TTSEAELLALIDELNADPTIDGILVQLPLPAHIDNVKVLERIHPD--KD-------VDGFHPYN  127 (285)
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cc-------cCccChhh
Confidence            345587776665543 3477777766543     4678888643  23433 344444443  32       22221111


Q ss_pred             HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHHH
Q 026023          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM  183 (244)
Q Consensus       105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~~  183 (244)
                      .   |-...+.+ .+.+.++.-++.++-.                         .+.++.||++.|+|.|+ +|+-+|.+
T Consensus       128 ~---g~l~~~~~-~~~PcTp~av~~ll~~-------------------------~~i~l~Gk~vvViGrs~iVG~Pla~l  178 (285)
T PRK10792        128 V---GRLAQRIP-LLRPCTPRGIMTLLER-------------------------YGIDTYGLNAVVVGASNIVGRPMSLE  178 (285)
T ss_pred             H---hHHhCCCC-CCCCCCHHHHHHHHHH-------------------------cCCCCCCCEEEEECCCcccHHHHHHH
Confidence            1   11111112 2456666665554422                         23469999999999999 99999999


Q ss_pred             HhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       184 la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      | ..-|+.|..+.++.                            .+|.+..++||+|+..+
T Consensus       179 L-~~~~atVtv~hs~T----------------------------~~l~~~~~~ADIvi~av  210 (285)
T PRK10792        179 L-LLAGCTVTVCHRFT----------------------------KNLRHHVRNADLLVVAV  210 (285)
T ss_pred             H-HHCCCeEEEEECCC----------------------------CCHHHHHhhCCEEEEcC
Confidence            9 89999999987542                            47999999999999764

>PLN02712 arogenate dehydrogenase

Probab=98.03  E-value=1.8e-05  Score=76.66  Aligned_cols=67  Identities=12%  Similarity=0.098  Sum_probs=50.1

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh-hhCCEE
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVV  240 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~sD~V  240 (244)
                      .-+.++|||||+|.||+.+|+.| +.+|.+|.+++++.....   ...            .++....++++++ .++|+|
T Consensus        49 ~~~~~kIgIIG~G~mG~slA~~L-~~~G~~V~~~dr~~~~~~---A~~------------~Gv~~~~d~~e~~~~~aDvV  112 (667)
T PLN02712         49 NTTQLKIAIIGFGNYGQFLAKTL-ISQGHTVLAHSRSDHSLA---ARS------------LGVSFFLDPHDLCERHPDVI  112 (667)
T ss_pred             cCCCCEEEEEccCHHHHHHHHHH-HHCCCEEEEEeCCHHHHH---HHH------------cCCEEeCCHHHHhhcCCCEE
Confidence            34557999999999999999998 899999999999843311   111            1222346788866 569999


Q ss_pred             EEeC
Q 026023          241 CTLC  244 (244)
Q Consensus       241 vl~~  244 (244)
                      ++++
T Consensus       113 iLav  116 (667)
T PLN02712        113 LLCT  116 (667)
T ss_pred             EEcC
Confidence            9985

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=97.98  E-value=3e-05  Score=67.23  Aligned_cols=68  Identities=21%  Similarity=0.233  Sum_probs=48.0

Q ss_pred             CCEEEEEcCChHHHHHHHHHhcc-CCcEEE-EEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~a-fG~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      ..+|||+|+|+||+.+++.|.+. .++++. .++|++.. .+++.+.+|       .    ...+.+++++++++|+|++
T Consensus         6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~-a~~~a~~~g-------~----~~~~~~~eell~~~D~Vvi   73 (271)
T PRK13302          6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQR-HADFIWGLR-------R----PPPVVPLDQLATHADIVVE   73 (271)
T ss_pred             eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHH-HHHHHHhcC-------C----CcccCCHHHHhcCCCEEEE
Confidence            46899999999999999998432 689877 56776543 233222221       0    1234689999999999998


Q ss_pred             eC
Q 026023          243 LC  244 (244)
Q Consensus       243 ~~  244 (244)
                      ++
T Consensus        74 ~t   75 (271)
T PRK13302         74 AA   75 (271)
T ss_pred             CC
Confidence            74

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=97.97  E-value=3.2e-05  Score=61.42  Aligned_cols=67  Identities=33%  Similarity=0.338  Sum_probs=48.7

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       163 l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      |+||+|.|+|||+-|.+-|.-| +--|.+|++-.|...+.++...+           ..+   ...+..|..++||+|.+
T Consensus         2 l~~k~IAViGyGsQG~a~AlNL-rDSG~~V~Vglr~~s~s~~~A~~-----------~Gf---~v~~~~eAv~~aDvV~~   66 (165)
T PF07991_consen    2 LKGKTIAVIGYGSQGHAHALNL-RDSGVNVIVGLREGSASWEKAKA-----------DGF---EVMSVAEAVKKADVVML   66 (165)
T ss_dssp             HCTSEEEEES-SHHHHHHHHHH-HHCC-EEEEEE-TTCHHHHHHHH-----------TT----ECCEHHHHHHC-SEEEE
T ss_pred             cCCCEEEEECCChHHHHHHHHH-HhCCCCEEEEecCCCcCHHHHHH-----------CCC---eeccHHHHHhhCCEEEE
Confidence            6899999999999999999999 99999999988887644433111           111   23589999999999987


Q ss_pred             eC
Q 026023          243 LC  244 (244)
Q Consensus       243 ~~  244 (244)
                      .+
T Consensus        67 L~   68 (165)
T PF07991_consen   67 LL   68 (165)
T ss_dssp             -S
T ss_pred             eC
Confidence            53

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=97.91  E-value=2.9e-05  Score=68.07  Aligned_cols=64  Identities=22%  Similarity=0.280  Sum_probs=49.6

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      ++|||+|+|.+|..+|+.| ...|.+|.+|||++... +++.+        .     +.....+..+++++||+|++++
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l-~~~G~~V~v~d~~~~~~-~~~~~--------~-----g~~~~~s~~~~~~~aDvVi~~v   65 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNL-LKQGHQLQVFDVNPQAV-DALVD--------K-----GATPAASPAQAAAGAEFVITML   65 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHH-HHCCCeEEEEcCCHHHH-HHHHH--------c-----CCcccCCHHHHHhcCCEEEEec
Confidence            3799999999999999998 68899999999987542 22111        1     1223468899999999999875

>PRK06545 prephenate dehydrogenase; Validated

Probab=97.90  E-value=3.2e-05  Score=69.67  Aligned_cols=68  Identities=18%  Similarity=0.188  Sum_probs=48.3

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      ++|+|||+|.||+.+|+.| +..|..|..+++++.........         +.... .....++++++++||+|++++
T Consensus         1 ~~I~iIG~GliG~siA~~L-~~~G~~v~i~~~~~~~~~~~~a~---------~~~~~-~~~~~~~~~~~~~aDlVilav   68 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAI-KAAGPDVFIIGYDPSAAQLARAL---------GFGVI-DELAADLQRAAAEADLIVLAV   68 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHH-HhcCCCeEEEEeCCCHHHHHHHh---------cCCCC-cccccCHHHHhcCCCEEEEeC
Confidence            4799999999999999998 89998888888776542211100         11111 112357889999999999975

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.87  E-value=5.8e-05  Score=65.58  Aligned_cols=67  Identities=21%  Similarity=0.265  Sum_probs=48.7

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCC----cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG----~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      +.+|||||+|++|+.+++.| ..-|    -+|.+++|+..+..+.+...+            +.....+..+++++||+|
T Consensus         3 ~mkI~~IG~G~mG~aia~~l-~~~g~~~~~~v~v~~r~~~~~~~~l~~~~------------g~~~~~~~~e~~~~aDvV   69 (279)
T PRK07679          3 IQNISFLGAGSIAEAIIGGL-LHANVVKGEQITVSNRSNETRLQELHQKY------------GVKGTHNKKELLTDANIL   69 (279)
T ss_pred             CCEEEEECccHHHHHHHHHH-HHCCCCCcceEEEECCCCHHHHHHHHHhc------------CceEeCCHHHHHhcCCEE
Confidence            45899999999999999998 5555    679999987643333322211            122346788999999999


Q ss_pred             EEeC
Q 026023          241 CTLC  244 (244)
Q Consensus       241 vl~~  244 (244)
                      ++++
T Consensus        70 ilav   73 (279)
T PRK07679         70 FLAM   73 (279)
T ss_pred             EEEe
Confidence            9975

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.86  E-value=0.00085  Score=58.52  Aligned_cols=55  Identities=18%  Similarity=0.308  Sum_probs=47.4

Q ss_pred             cccCCCEEEEEcCCh-HHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023          161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~-IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~  239 (244)
                      .++.||++.|+|.|. .|+.+|.+| ...|++|..+++..                            .+|.+.+++||+
T Consensus       155 i~l~Gk~vvViG~gg~vGkpia~~L-~~~gatVtv~~~~t----------------------------~~L~~~~~~aDI  205 (283)
T PRK14192        155 IELAGKHAVVVGRSAILGKPMAMML-LNANATVTICHSRT----------------------------QNLPELVKQADI  205 (283)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHH-HhCCCEEEEEeCCc----------------------------hhHHHHhccCCE
Confidence            569999999999998 999999998 79999999988731                            368888899999


Q ss_pred             EEEeC
Q 026023          240 VCTLC  244 (244)
Q Consensus       240 Vvl~~  244 (244)
                      |+.++
T Consensus       206 vI~At  210 (283)
T PRK14192        206 IVGAV  210 (283)
T ss_pred             EEEcc
Confidence            98763

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=97.84  E-value=4.2e-05  Score=67.16  Aligned_cols=63  Identities=17%  Similarity=0.352  Sum_probs=48.1

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhh---CCEEEEe
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVVCTL  243 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---sD~Vvl~  243 (244)
                      +|||||+|++|+.+|+.| ...|.+|.+|||++... ++. ..            .+.....+.++++++   +|+|+++
T Consensus         2 ~Ig~IGlG~mG~~mA~~L-~~~g~~v~v~dr~~~~~-~~~-~~------------~g~~~~~s~~~~~~~~~~advVi~~   66 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERL-REDGHEVVGYDVNQEAV-DVA-GK------------LGITARHSLEELVSKLEAPRTIWVM   66 (299)
T ss_pred             EEEEEcccHHHHHHHHHH-HhCCCEEEEEECCHHHH-HHH-HH------------CCCeecCCHHHHHHhCCCCCEEEEE
Confidence            699999999999999998 78899999999986542 221 11            112334689999887   5899987


Q ss_pred             C
Q 026023          244 C  244 (244)
Q Consensus       244 ~  244 (244)
                      +
T Consensus        67 v   67 (299)
T PRK12490         67 V   67 (299)
T ss_pred             e
Confidence            5

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=97.82  E-value=6.7e-05  Score=60.45  Aligned_cols=54  Identities=22%  Similarity=0.297  Sum_probs=47.1

Q ss_pred             cccCCCEEEEEcCChH-HHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023          161 NLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~I-G~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~  239 (244)
                      .++.|+++.|+|.|.+ |+.+|+.| ...|++|..++|+.                            .++.+.+++||+
T Consensus        40 ~~l~gk~vlViG~G~~~G~~~a~~L-~~~g~~V~v~~r~~----------------------------~~l~~~l~~aDi   90 (168)
T cd01080          40 IDLAGKKVVVVGRSNIVGKPLAALL-LNRNATVTVCHSKT----------------------------KNLKEHTKQADI   90 (168)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHH-hhCCCEEEEEECCc----------------------------hhHHHHHhhCCE
Confidence            3589999999999985 88899998 89999999999862                            368899999999


Q ss_pred             EEEe
Q 026023          240 VCTL  243 (244)
Q Consensus       240 Vvl~  243 (244)
                      |+.+
T Consensus        91 VIsa   94 (168)
T cd01080          91 VIVA   94 (168)
T ss_pred             EEEc
Confidence            9975

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.82  E-value=0.0006  Score=59.30  Aligned_cols=144  Identities=18%  Similarity=0.223  Sum_probs=90.9

Q ss_pred             HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccHH-HHHHhhccCCcEEEEcccCCCccChHH
Q 026023           33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVNA  104 (244)
Q Consensus        33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~~-~l~~~p~l~~k~I~~~~aG~d~id~~~  104 (244)
                      .++.|++.+.+..++ ..+++++.+.+..     ..+++++..+  ..+++. +++..+..  |       =+|.+....
T Consensus        56 a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~--K-------DVDGl~~~n  125 (285)
T PRK14191         56 CERVGMDSDLHTLQE-NTTEAELLSLIKDLNTDQNIDGILVQLPLPRHIDTKMVLEAIDPN--K-------DVDGFHPLN  125 (285)
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--c-------cccccChhh
Confidence            345587777666554 3467777765543     3578888643  234433 44444443  3       223222111


Q ss_pred             HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCC-hHHHHHHHH
Q 026023          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYARM  183 (244)
Q Consensus       105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G-~IG~~vA~~  183 (244)
                      .   |-...+. ..+.++++.-++.++=.                         .+.++.||+|.|+|-| -+|+.+|.+
T Consensus       126 ~---g~l~~g~-~~~~PcTp~avi~lL~~-------------------------~~i~l~Gk~vvVvGrs~~VG~Pla~l  176 (285)
T PRK14191        126 I---GKLCSQL-DGFVPATPMGVMRLLKH-------------------------YHIEIKGKDVVIIGASNIVGKPLAML  176 (285)
T ss_pred             H---HHHhcCC-CCCCCCcHHHHHHHHHH-------------------------hCCCCCCCEEEEECCCchhHHHHHHH
Confidence            1   1111222 23567777776665422                         2346999999999999 899999999


Q ss_pred             HhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       184 la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      | ..-|+.|..+....                            .+|.+.+++||+|+..+
T Consensus       177 L-~~~gAtVtv~hs~t----------------------------~~l~~~~~~ADIvV~Av  208 (285)
T PRK14191        177 M-LNAGASVSVCHILT----------------------------KDLSFYTQNADIVCVGV  208 (285)
T ss_pred             H-HHCCCEEEEEeCCc----------------------------HHHHHHHHhCCEEEEec
Confidence            8 78899999885421                            36889999999999864

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=97.80  E-value=4.1e-05  Score=70.12  Aligned_cols=64  Identities=27%  Similarity=0.463  Sum_probs=43.4

Q ss_pred             ccccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCC-----------cchHHHHHHhhhhhhhhcCCCCCccccccC
Q 026023          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY-----------QATRLEKFVTAYGQFLKANGEQPVTWKRAS  228 (244)
Q Consensus       160 ~~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (244)
                      ...|+||||+|||+|+||+.      ++|++++.++++.           .+. .+..           ....+   ...
T Consensus        31 ~~~LkgKtIaIIGyGSqG~A------qAlNLrdSGvnVvvglr~~~id~~~~s-~~kA-----------~~dGF---~v~   89 (487)
T PRK05225         31 ASYLKGKKIVIVGCGAQGLN------QGLNMRDSGLDISYALRKEAIAEKRAS-WRKA-----------TENGF---KVG   89 (487)
T ss_pred             hHHhCCCEEEEEccCHHHHH------HhCCCccccceeEEeccccccccccch-HHHH-----------HhcCC---ccC
Confidence            35799999999999999993      5666666666555           111 1110           00112   346


Q ss_pred             CHHHHhhhCCEEEEeC
Q 026023          229 SMDEVLREADVVCTLC  244 (244)
Q Consensus       229 ~l~ell~~sD~Vvl~~  244 (244)
                      +++|++++||+|++.+
T Consensus        90 ~~~Ea~~~ADvVviLl  105 (487)
T PRK05225         90 TYEELIPQADLVINLT  105 (487)
T ss_pred             CHHHHHHhCCEEEEcC
Confidence            8999999999999864

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=97.77  E-value=5.8e-05  Score=65.58  Aligned_cols=64  Identities=19%  Similarity=0.367  Sum_probs=44.8

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +|||||+|.||+.+|+.| +..|.+|.+|++++... +...+        .+.  .. ....+. +.+++||+|++++
T Consensus         2 ~I~IIG~G~mG~sla~~L-~~~g~~V~~~d~~~~~~-~~a~~--------~g~--~~-~~~~~~-~~~~~aDlVilav   65 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDL-RSLGHTVYGVSRRESTC-ERAIE--------RGL--VD-EASTDL-SLLKDCDLVILAL   65 (279)
T ss_pred             eEEEEeecHHHHHHHHHH-HHCCCEEEEEECCHHHH-HHHHH--------CCC--cc-cccCCH-hHhcCCCEEEEcC
Confidence            699999999999999998 78899999999986542 21110        111  00 011234 5789999999874

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=97.76  E-value=5.8e-05  Score=66.47  Aligned_cols=67  Identities=27%  Similarity=0.347  Sum_probs=47.9

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCCc--EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      .++|+|+|+|.||..+|+.| +..|.  +|.+|+|++... +. ....       +.   ......++++.++++|+|++
T Consensus         6 ~~~I~IIG~G~mG~sla~~l-~~~g~~~~V~~~dr~~~~~-~~-a~~~-------g~---~~~~~~~~~~~~~~aDvVii   72 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAI-RRLGLAGEIVGADRSAETR-AR-AREL-------GL---GDRVTTSAAEAVKGADLVIL   72 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHH-HhcCCCcEEEEEECCHHHH-HH-HHhC-------CC---CceecCCHHHHhcCCCEEEE
Confidence            46899999999999999998 67774  899999986531 11 1111       11   01123578889999999998


Q ss_pred             eC
Q 026023          243 LC  244 (244)
Q Consensus       243 ~~  244 (244)
                      ++
T Consensus        73 av   74 (307)
T PRK07502         73 CV   74 (307)
T ss_pred             CC
Confidence            75

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.73  E-value=0.0001  Score=63.90  Aligned_cols=65  Identities=25%  Similarity=0.353  Sum_probs=47.2

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCc----EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKM----NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC  241 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~----~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv  241 (244)
                      .++||||+|++|+.+++.| ..-|.    +|++++|++.. .+...+.+            ++....+..+++++||+|+
T Consensus         3 ~~IgfIG~G~MG~aia~~L-~~~g~~~~~~I~v~~r~~~~-~~~l~~~~------------g~~~~~~~~e~~~~aDiIi   68 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGM-INKNIVSPDQIICSDLNVSN-LKNASDKY------------GITITTNNNEVANSADILI   68 (272)
T ss_pred             CeEEEECccHHHHHHHHHH-HHCCCCCCceEEEECCCHHH-HHHHHHhc------------CcEEeCCcHHHHhhCCEEE
Confidence            4799999999999999987 55453    69999998644 22222111            1223457889999999999


Q ss_pred             EeC
Q 026023          242 TLC  244 (244)
Q Consensus       242 l~~  244 (244)
                      +++
T Consensus        69 Lav   71 (272)
T PRK12491         69 LSI   71 (272)
T ss_pred             EEe
Confidence            975

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=97.72  E-value=0.00014  Score=57.06  Aligned_cols=73  Identities=21%  Similarity=0.335  Sum_probs=51.1

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCC-cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      ++.+++++|+|.|.+|+.+++.| ...| .+|.+++|++... ++..+.++.       .... ....++.++++++|+|
T Consensus        16 ~~~~~~i~iiG~G~~g~~~a~~l-~~~g~~~v~v~~r~~~~~-~~~~~~~~~-------~~~~-~~~~~~~~~~~~~Dvv   85 (155)
T cd01065          16 ELKGKKVLILGAGGAARAVAYAL-AELGAAKIVIVNRTLEKA-KALAERFGE-------LGIA-IAYLDLEELLAEADLI   85 (155)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEcCCHHHH-HHHHHHHhh-------cccc-eeecchhhccccCCEE
Confidence            36688999999999999999998 6775 7899999986542 222222210       0000 1235788889999999


Q ss_pred             EEeC
Q 026023          241 CTLC  244 (244)
Q Consensus       241 vl~~  244 (244)
                      ++++
T Consensus        86 i~~~   89 (155)
T cd01065          86 INTT   89 (155)
T ss_pred             EeCc
Confidence            9864

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=97.72  E-value=7.6e-05  Score=68.62  Aligned_cols=71  Identities=24%  Similarity=0.320  Sum_probs=52.8

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCC-cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      .+.|++|+|+|+|.||+.+++.| ..+| .+|.+++|+.... +++...+       +..   .....++.+.+..+|+|
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L-~~~G~~~V~v~~rs~~ra-~~la~~~-------g~~---~i~~~~l~~~l~~aDvV  244 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHL-LRKGVGKILIANRTYERA-EDLAKEL-------GGE---AVKFEDLEEYLAEADIV  244 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHH-HHCCCCEEEEEeCCHHHH-HHHHHHc-------CCe---EeeHHHHHHHHhhCCEE
Confidence            37889999999999999999998 7899 6899999987542 2222222       111   12335788999999999


Q ss_pred             EEeC
Q 026023          241 CTLC  244 (244)
Q Consensus       241 vl~~  244 (244)
                      +.++
T Consensus       245 i~aT  248 (417)
T TIGR01035       245 ISST  248 (417)
T ss_pred             EECC
Confidence            9763

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=97.72  E-value=6.7e-05  Score=66.41  Aligned_cols=67  Identities=27%  Similarity=0.428  Sum_probs=55.8

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      ..+.||++.|.|||..|+-+|.++ +++|++|++..-.|-...+..++.|               ...+++|....+|++
T Consensus       205 ~liaGK~vVV~GYG~vGrG~A~~~-rg~GA~ViVtEvDPI~AleA~MdGf---------------~V~~m~~Aa~~gDif  268 (420)
T COG0499         205 VLLAGKNVVVAGYGWVGRGIAMRL-RGMGARVIVTEVDPIRALEAAMDGF---------------RVMTMEEAAKTGDIF  268 (420)
T ss_pred             eeecCceEEEecccccchHHHHHh-hcCCCeEEEEecCchHHHHHhhcCc---------------EEEEhHHhhhcCCEE
Confidence            358999999999999999999997 9999999999988766555544432               345799999999999


Q ss_pred             EEe
Q 026023          241 CTL  243 (244)
Q Consensus       241 vl~  243 (244)
                      +-+
T Consensus       269 iT~  271 (420)
T COG0499         269 VTA  271 (420)
T ss_pred             EEc
Confidence            864

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=97.70  E-value=0.00011  Score=64.36  Aligned_cols=62  Identities=15%  Similarity=0.267  Sum_probs=48.3

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +|||||+|++|+.+|+.| ..-|.+|.+|+++++.  +++.+             .+.....+..++.++||+|++++
T Consensus         2 ~Ig~IGlG~MG~~ma~~L-~~~G~~v~v~~~~~~~--~~~~~-------------~g~~~~~s~~~~~~~advVi~~v   63 (292)
T PRK15059          2 KLGFIGLGIMGTPMAINL-ARAGHQLHVTTIGPVA--DELLS-------------LGAVSVETARQVTEASDIIFIMV   63 (292)
T ss_pred             eEEEEccCHHHHHHHHHH-HHCCCeEEEEeCCHhH--HHHHH-------------cCCeecCCHHHHHhcCCEEEEeC
Confidence            699999999999999998 7889999999988642  22211             11223468889999999999875

>TIGR00518 alaDH alanine dehydrogenase

Probab=97.70  E-value=8.6e-05  Score=67.20  Aligned_cols=196  Identities=16%  Similarity=0.148  Sum_probs=102.2

Q ss_pred             HHHHHHhCCCeEEEeccC--CCCCCHHHHHHH---hcC------CccEEEeccCccccHHHHHHhhccCCcEEEEcccCC
Q 026023           29 WINLLIEQDCRVEICTQK--KTILSVEDIIAL---IGD------KCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGY   97 (244)
Q Consensus        29 ~~~~l~~~~~~v~~~~~~--~~~~~~~~~~~~---~~~------~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~aG~   97 (244)
                      ..+.|.+.|++|.+-...  ...+++++..++   +.+      .+|+|+.- .. ..++.++.++. |--+++......
T Consensus        22 ~v~~l~~~g~~v~vE~gaG~~~~~~D~~Y~~aGa~i~~~~~~~~~~dii~~V-k~-p~~~~~~~~~~-g~~l~~~~~~a~   98 (370)
T TIGR00518        22 GVAELTSRGHEVLVEAGAGEGSGFTDAAYKAAGAELVATAKQVWDAELVLKV-KE-PLPEEYGYLRH-GQILFTYLHLAA   98 (370)
T ss_pred             HHHHHHhCCCEEEEECCCCcCCCCChHHHHHCCCEEecCHHHHhcCCEEEEe-CC-CCHHHHhhcCC-CcEEEEEeccCC
Confidence            356677778888654331  223455555432   100      26776632 22 33344455544 324555555555


Q ss_pred             CccChHHHhhCCcEEEecCCCC--------CcchHHHHHHHHHHH-HhChHHHHHHHHcCCCCCCCCCcccccccCCCEE
Q 026023           98 NNVDVNAANKYGIAVGNTPGVL--------TETTAELAASLSLAA-ARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTV  168 (244)
Q Consensus        98 d~id~~~~~~~gI~v~n~~~~~--------~~~vAE~~l~~~L~~-~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tv  168 (244)
                      +....+.+.++++.....-..-        -.++|+.+=-..... +..+.      +  .+.+.......-..+.+.+|
T Consensus        99 ~~~~~~~l~~~~~t~i~~e~i~~~~~~~~~l~~~~~iaG~~av~~aa~~~~------~--~~~g~~~~~~~~~~l~~~~V  170 (370)
T TIGR00518        99 ERALTDALLDSGTTAIAYETVQTADGALPLLAPMSEVAGRLAAQVGAYHLE------K--TQGGRGVLLGGVPGVEPGDV  170 (370)
T ss_pred             CHHHHHHHHHcCCeEEEeeeeeccCCCCccccchhHHHHHHHHHHHHHHhH------h--hcCCcceeecCCCCCCCceE
Confidence            5555677778887766533321        122233221111110 11111      1  10000000001124678899


Q ss_pred             EEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       169 gIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      .|+|+|.+|+.+++.+ +.+|++|.++|+++.. .+.....++..      .........++.+.++++|+|+.+
T Consensus       171 lViGaG~vG~~aa~~a-~~lGa~V~v~d~~~~~-~~~l~~~~g~~------v~~~~~~~~~l~~~l~~aDvVI~a  237 (370)
T TIGR00518       171 TIIGGGVVGTNAAKMA-NGLGATVTILDINIDR-LRQLDAEFGGR------IHTRYSNAYEIEDAVKRADLLIGA  237 (370)
T ss_pred             EEEcCCHHHHHHHHHH-HHCCCeEEEEECCHHH-HHHHHHhcCce------eEeccCCHHHHHHHHccCCEEEEc
Confidence            9999999999999997 9999999999998643 12211122110      000111224678899999999975

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=97.70  E-value=0.0026  Score=59.77  Aligned_cols=157  Identities=17%  Similarity=0.139  Sum_probs=92.5

Q ss_pred             HHHHHHhCCCeEEEecc--CCCCCCHHHHHHH---------hcCCccEEEeccCccccHHHHHHhhccCCcEEEEcccCC
Q 026023           29 WINLLIEQDCRVEICTQ--KKTILSVEDIIAL---------IGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGY   97 (244)
Q Consensus        29 ~~~~l~~~~~~v~~~~~--~~~~~~~~~~~~~---------~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~aG~   97 (244)
                      ..++|.+.|++|.+-..  ....+++++..++         +. ++|+|+.- . +++++.++.+++ |-.+|+......
T Consensus        22 ~v~~L~~~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~v~-~~diilkV-~-~P~~~e~~~l~~-g~~li~~l~p~~   97 (509)
T PRK09424         22 TVEQLLKLGFEVVVESGAGQLASFDDAAYREAGAEIVDGAAVW-QSDIILKV-N-APSDDEIALLRE-GATLVSFIWPAQ   97 (509)
T ss_pred             HHHHHHHCCCEEEEeCCCCcCCCCCHHHHHHCCCEEecCcccc-cCCEEEEe-C-CCCHHHHHhcCC-CCEEEEEeCccc
Confidence            35677778888865443  1224567777652         11 36777642 2 234555677766 446666666655


Q ss_pred             CccChHHHhhCCcEEEecCCCC----C------cchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCccc-ccccCCC
Q 026023           98 NNVDVNAANKYGIAVGNTPGVL----T------ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFV-GNLLKGQ  166 (244)
Q Consensus        98 d~id~~~~~~~gI~v~n~~~~~----~------~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~-~~~l~g~  166 (244)
                      |.=.++.+.++||.+...-..-    +      .++|+.+=      +|-+...-+..  +.   ..+.... .....|.
T Consensus        98 ~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IAG------y~Av~~aa~~~--~~---~~~g~~taaG~~pg~  166 (509)
T PRK09424         98 NPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIAG------YRAVIEAAHEF--GR---FFTGQITAAGKVPPA  166 (509)
T ss_pred             CHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhhhH------HHHHHHHHHHh--cc---cCCCceeccCCcCCC
Confidence            5445677888999887643322    1      22333221      11111111111  11   1110000 1145799


Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +|.|+|.|.||...+..+ +.+|++|.++|+++..
T Consensus       167 kVlViGaG~iGL~Ai~~A-k~lGA~V~a~D~~~~r  200 (509)
T PRK09424        167 KVLVIGAGVAGLAAIGAA-GSLGAIVRAFDTRPEV  200 (509)
T ss_pred             EEEEECCcHHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            999999999999999995 9999999999998754

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=97.70  E-value=2.1e-05  Score=60.43  Aligned_cols=67  Identities=27%  Similarity=0.396  Sum_probs=42.1

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCcEEEEE-cCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      ...+|||||.|+.|..+++.| +.-|..|.++ +|+... .+....            .++.....+++|+++++|++++
T Consensus         9 ~~l~I~iIGaGrVG~~La~aL-~~ag~~v~~v~srs~~s-a~~a~~------------~~~~~~~~~~~~~~~~aDlv~i   74 (127)
T PF10727_consen    9 ARLKIGIIGAGRVGTALARAL-ARAGHEVVGVYSRSPAS-AERAAA------------FIGAGAILDLEEILRDADLVFI   74 (127)
T ss_dssp             ---EEEEECTSCCCCHHHHHH-HHTTSEEEEESSCHH-H-HHHHHC--------------TT-----TTGGGCC-SEEEE
T ss_pred             CccEEEEECCCHHHHHHHHHH-HHCCCeEEEEEeCCccc-cccccc------------ccccccccccccccccCCEEEE
Confidence            445899999999999999999 8899998876 454422 222111            1122234578899999999998


Q ss_pred             eC
Q 026023          243 LC  244 (244)
Q Consensus       243 ~~  244 (244)
                      ++
T Consensus        75 av   76 (127)
T PF10727_consen   75 AV   76 (127)
T ss_dssp             -S
T ss_pred             Ee
Confidence            74

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=97.68  E-value=0.0001  Score=64.75  Aligned_cols=63  Identities=25%  Similarity=0.366  Sum_probs=47.8

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhh---CCEEEEe
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVVCTL  243 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---sD~Vvl~  243 (244)
                      +|||+|+|.+|+.+|+.| ...|.+|.+|||++... +++.+             .+....++.+|+++.   +|+|+++
T Consensus         2 ~Ig~IGlG~MG~~mA~~L-~~~g~~v~v~dr~~~~~-~~~~~-------------~g~~~~~~~~e~~~~~~~~dvvi~~   66 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRL-LRGGHEVVGYDRNPEAV-EALAE-------------EGATGADSLEELVAKLPAPRVVWLM   66 (301)
T ss_pred             EEEEEcccHHHHHHHHHH-HHCCCeEEEEECCHHHH-HHHHH-------------CCCeecCCHHHHHhhcCCCCEEEEE
Confidence            699999999999999998 78899999999997542 22111             112334688898886   5899886


Q ss_pred             C
Q 026023          244 C  244 (244)
Q Consensus       244 ~  244 (244)
                      +
T Consensus        67 v   67 (301)
T PRK09599         67 V   67 (301)
T ss_pred             e
Confidence            4

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.67  E-value=0.00015  Score=62.47  Aligned_cols=65  Identities=25%  Similarity=0.311  Sum_probs=47.7

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCC---cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFK---MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG---~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      .+++|||+|+||+.+++.| ..-|   .+|.+++|++.. .+...+.|            +.....+..++++++|+|++
T Consensus         3 m~I~iIG~G~mG~~la~~l-~~~g~~~~~v~v~~r~~~~-~~~~~~~~------------g~~~~~~~~~~~~~advVil   68 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGL-LASGVPAKDIIVSDPSPEK-RAALAEEY------------GVRAATDNQEAAQEADVVVL   68 (267)
T ss_pred             CEEEEEechHHHHHHHHHH-HhCCCCcceEEEEcCCHHH-HHHHHHhc------------CCeecCChHHHHhcCCEEEE
Confidence            4799999999999999998 5667   689999998643 22222111            11223578889999999999


Q ss_pred             eC
Q 026023          243 LC  244 (244)
Q Consensus       243 ~~  244 (244)
                      ++
T Consensus        69 ~v   70 (267)
T PRK11880         69 AV   70 (267)
T ss_pred             Ec
Confidence            75

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=97.65  E-value=0.00023  Score=64.50  Aligned_cols=53  Identities=17%  Similarity=0.307  Sum_probs=45.1

Q ss_pred             CCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       164 ~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      ..++|+|+| +|.+|+.+|+.| +.-|..|.+|+++..                           .+.++++++||+|++
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l-~~~G~~V~~~d~~~~---------------------------~~~~~~~~~aDlVil  148 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKML-TLSGYQVRILEQDDW---------------------------DRAEDILADAGMVIV  148 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHH-HHCCCeEEEeCCCcc---------------------------hhHHHHHhcCCEEEE
Confidence            457999999 999999999998 788999999998531                           256788899999998


Q ss_pred             eC
Q 026023          243 LC  244 (244)
Q Consensus       243 ~~  244 (244)
                      ++
T Consensus       149 av  150 (374)
T PRK11199        149 SV  150 (374)
T ss_pred             eC
Confidence            74

>PLN02688 pyrroline-5-carboxylate reductase

Probab=97.64  E-value=0.00013  Score=62.79  Aligned_cols=63  Identities=30%  Similarity=0.373  Sum_probs=46.3

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCc----EEEEE-cCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKM----NLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC  241 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~----~V~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv  241 (244)
                      +|||||+|++|+.+++.| ..-|.    +|+++ +|++.. .+.. ..+            +.....+..+++++||+|+
T Consensus         2 kI~~IG~G~mG~a~a~~L-~~~g~~~~~~i~v~~~r~~~~-~~~~-~~~------------g~~~~~~~~e~~~~aDvVi   66 (266)
T PLN02688          2 RVGFIGAGKMAEAIARGL-VASGVVPPSRISTADDSNPAR-RDVF-QSL------------GVKTAASNTEVVKSSDVII   66 (266)
T ss_pred             eEEEECCcHHHHHHHHHH-HHCCCCCcceEEEEeCCCHHH-HHHH-HHc------------CCEEeCChHHHHhcCCEEE
Confidence            699999999999999998 56676    88888 877543 2221 111            2223467889999999999


Q ss_pred             EeC
Q 026023          242 TLC  244 (244)
Q Consensus       242 l~~  244 (244)
                      +++
T Consensus        67 l~v   69 (266)
T PLN02688         67 LAV   69 (266)
T ss_pred             EEE
Confidence            874

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=97.64  E-value=7.6e-05  Score=65.29  Aligned_cols=35  Identities=34%  Similarity=0.558  Sum_probs=31.9

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ++|||||.|.+|..+|+.| ...|.+|+.||+++..
T Consensus         5 ~~V~vIG~G~mG~~iA~~l-~~~G~~V~~~d~~~~~   39 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLA-AAAGMDVWLLDSDPAA   39 (295)
T ss_pred             CEEEEECCCHHHHHHHHHH-HhcCCeEEEEeCCHHH
Confidence            5899999999999999998 6889999999998754

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.61  E-value=0.0022  Score=55.77  Aligned_cols=144  Identities=16%  Similarity=0.233  Sum_probs=90.6

Q ss_pred             HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccHH-HHHHhhccCCcEEEEcccCCCccChHH
Q 026023           33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVNA  104 (244)
Q Consensus        33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~~-~l~~~p~l~~k~I~~~~aG~d~id~~~  104 (244)
                      .++.|++.+....++ ..+++++.+.+..     .+|++++..+  ..+++. +++..+..  |       =+|.+....
T Consensus        56 a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~--K-------DVDGl~p~N  125 (284)
T PRK14170         56 TEEAGMKSVLIELPE-NVTEEKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVIDTISYD--K-------DVDGFHPVN  125 (284)
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcc--c-------CcccCChhh
Confidence            345577776665544 3477777766542     4678888643  234443 44444443  3       223222111


Q ss_pred             HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHHH
Q 026023          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM  183 (244)
Q Consensus       105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~~  183 (244)
                      .   |-...+. ..+.+.++.-++.++-.                         .+.++.||++.|+|-+. +|+-+|.+
T Consensus       126 ~---g~l~~~~-~~~~PcTp~avi~lL~~-------------------------~~i~l~Gk~vvVvGrS~iVGkPla~l  176 (284)
T PRK14170        126 V---GNLFIGK-DSFVPCTPAGIIELIKS-------------------------TGTQIEGKRAVVIGRSNIVGKPVAQL  176 (284)
T ss_pred             h---hHHhCCC-CCCCCCCHHHHHHHHHH-------------------------hCCCCCCCEEEEECCCCcchHHHHHH
Confidence            1   1111111 23567777776665521                         23579999999999987 59999999


Q ss_pred             HhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       184 la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      | ..-|+.|..+....                            .+|.+..++||+|+..+
T Consensus       177 L-~~~~atVtichs~T----------------------------~~l~~~~~~ADIvI~Av  208 (284)
T PRK14170        177 L-LNENATVTIAHSRT----------------------------KDLPQVAKEADILVVAT  208 (284)
T ss_pred             H-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEec
Confidence            9 78899998876431                            37999999999999864

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=97.61  E-value=0.00023  Score=61.94  Aligned_cols=65  Identities=26%  Similarity=0.269  Sum_probs=51.8

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      .+||+||+|.-|..+|++| ..=|..|.+|||++.+. ++.....            +.....+..|+.+++|+|+.++
T Consensus         1 ~kIafIGLG~MG~pmA~~L-~~aG~~v~v~~r~~~ka-~~~~~~~------------Ga~~a~s~~eaa~~aDvVitmv   65 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANL-LKAGHEVTVYNRTPEKA-AELLAAA------------GATVAASPAEAAAEADVVITML   65 (286)
T ss_pred             CeEEEEcCchhhHHHHHHH-HHCCCEEEEEeCChhhh-hHHHHHc------------CCcccCCHHHHHHhCCEEEEec
Confidence            3799999999999999999 89999999999998763 2222211            2334468899999999999875

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.61  E-value=0.0017  Score=56.32  Aligned_cols=144  Identities=15%  Similarity=0.152  Sum_probs=91.9

Q ss_pred             HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccH-HHHHHhhccCCcEEEEcccCCCccChHH
Q 026023           33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA  104 (244)
Q Consensus        33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~-~~l~~~p~l~~k~I~~~~aG~d~id~~~  104 (244)
                      .++.|++.+....++ ..+++|+.+.+..     .++++++..+  ..++. .+++..+..  |       =+|.+....
T Consensus        51 ~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~v~~~I~p~--K-------DVDGl~~~n  120 (279)
T PRK14178         51 CERVGIGSVGIELPG-DATTRTVLERIRRLNEDPDINGILVQLPLPKGVDTERVIAAILPE--K-------DVDGFHPLN  120 (279)
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc--c-------CcccCChhh
Confidence            345587776665544 3577777776542     4678888643  23443 344444443  3       223222111


Q ss_pred             HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCC-hHHHHHHHH
Q 026023          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYARM  183 (244)
Q Consensus       105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G-~IG~~vA~~  183 (244)
                      .   |-...+.+ .+.+.++.-++.++=.                         .+.++.|++|.|+|.+ ..|+.+|.+
T Consensus       121 ~---g~l~~~~~-~~~PcTp~av~~ll~~-------------------------~~i~l~Gk~V~ViGrs~~vGrpla~l  171 (279)
T PRK14178        121 L---GRLVSGLP-GFAPCTPNGIMTLLHE-------------------------YKISIAGKRAVVVGRSIDVGRPMAAL  171 (279)
T ss_pred             H---HHHhCCCC-CCCCCCHHHHHHHHHH-------------------------cCCCCCCCEEEEECCCccccHHHHHH
Confidence            1   11111222 3567777766654422                         2346999999999999 899999999


Q ss_pred             HhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       184 la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      | ..+|++|..+.++.                            .+|.+.+++||+|+..+
T Consensus       172 L-~~~~atVtv~hs~t----------------------------~~L~~~~~~ADIvI~Av  203 (279)
T PRK14178        172 L-LNADATVTICHSKT----------------------------ENLKAELRQADILVSAA  203 (279)
T ss_pred             H-HhCCCeeEEEecCh----------------------------hHHHHHHhhCCEEEECC
Confidence            8 89999998887542                            36999999999999753

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.58  E-value=0.0025  Score=55.38  Aligned_cols=144  Identities=17%  Similarity=0.237  Sum_probs=90.9

Q ss_pred             HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccH-HHHHHhhccCCcEEEEcccCCCccChHH
Q 026023           33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA  104 (244)
Q Consensus        33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~-~~l~~~p~l~~k~I~~~~aG~d~id~~~  104 (244)
                      .++.|++++.+..++ ..+++++.+.+..     .+|++++..+  ..+++ .+++..+..  |=       +|.+-...
T Consensus        55 a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~--KD-------VDGl~~~N  124 (282)
T PRK14169         55 AEDIGVRSLMFRLPE-ATTQADLLAKVAELNHDPDVDAILVQLPLPAGLDEQAVIDAIDPD--KD-------VDGFSPVS  124 (282)
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhhcCcc--cC-------cccCChhh
Confidence            345588877666544 3577777776543     4578888643  23443 345555443  32       22221110


Q ss_pred             HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHHH
Q 026023          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM  183 (244)
Q Consensus       105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~~  183 (244)
                      .   |-...+.+ .+.++++.-++.++=.                         .+.++.||++.|+|-+. +|+-+|.+
T Consensus       125 ~---g~l~~~~~-~~~PcTp~avi~lL~~-------------------------~~i~l~Gk~vvViGrS~iVGkPla~l  175 (282)
T PRK14169        125 V---GRLWANEP-TVVASTPYGIMALLDA-------------------------YDIDVAGKRVVIVGRSNIVGRPLAGL  175 (282)
T ss_pred             h---HHHhcCCC-CCCCCCHHHHHHHHHH-------------------------hCCCCCCCEEEEECCCccchHHHHHH
Confidence            0   11111222 3567777776665522                         23469999999999987 59999999


Q ss_pred             HhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       184 la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      | ..-|+.|..+....                            .+|.+..++||+|+..+
T Consensus       176 L-~~~~atVtichs~T----------------------------~~l~~~~~~ADIvI~Av  207 (282)
T PRK14169        176 M-VNHDATVTIAHSKT----------------------------RNLKQLTKEADILVVAV  207 (282)
T ss_pred             H-HHCCCEEEEECCCC----------------------------CCHHHHHhhCCEEEEcc
Confidence            9 78899998876431                            37999999999999864

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.58  E-value=0.00027  Score=61.46  Aligned_cols=67  Identities=18%  Similarity=0.299  Sum_probs=46.7

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCC----cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC  241 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG----~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv  241 (244)
                      .+++|+|+|++|+.+++.| ..-|    .+|.+++|+..+..+.....+       .    ......+..++++++|+|+
T Consensus         2 ~~I~iIG~G~mG~ala~~L-~~~g~~~~~~V~~~~r~~~~~~~~l~~~~-------~----~~~~~~~~~e~~~~aDvVi   69 (277)
T PRK06928          2 EKIGFIGYGSMADMIATKL-LETEVATPEEIILYSSSKNEHFNQLYDKY-------P----TVELADNEAEIFTKCDHSF   69 (277)
T ss_pred             CEEEEECccHHHHHHHHHH-HHCCCCCcccEEEEeCCcHHHHHHHHHHc-------C----CeEEeCCHHHHHhhCCEEE
Confidence            3699999999999999998 5556    689999987543222211111       0    1112357889999999999


Q ss_pred             EeC
Q 026023          242 TLC  244 (244)
Q Consensus       242 l~~  244 (244)
                      +++
T Consensus        70 lav   72 (277)
T PRK06928         70 ICV   72 (277)
T ss_pred             Eec
Confidence            874

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=97.58  E-value=0.00036  Score=57.79  Aligned_cols=67  Identities=24%  Similarity=0.213  Sum_probs=49.1

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      ++++|+|.|+||..+|+++ ..-|-+|+.-+++..+..+...+..          .. ...-.+.++..+.+|+|++.+
T Consensus         2 ~~~~i~GtGniG~alA~~~-a~ag~eV~igs~r~~~~~~a~a~~l----------~~-~i~~~~~~dA~~~aDVVvLAV   68 (211)
T COG2085           2 MIIAIIGTGNIGSALALRL-AKAGHEVIIGSSRGPKALAAAAAAL----------GP-LITGGSNEDAAALADVVVLAV   68 (211)
T ss_pred             cEEEEeccChHHHHHHHHH-HhCCCeEEEecCCChhHHHHHHHhh----------cc-ccccCChHHHHhcCCEEEEec
Confidence            4799999999999999998 7999999988776654333222111          11 122357899999999999864

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=97.57  E-value=0.00017  Score=63.74  Aligned_cols=70  Identities=29%  Similarity=0.348  Sum_probs=50.9

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhccCC-cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023          163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC  241 (244)
Q Consensus       163 l~g~tvgIvG~G~IG~~vA~~la~afG-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv  241 (244)
                      +.|++|+|+|.|.||+.+++.| +..| .+|..++|++... +++...+|       .   .....+++.+.+.++|+|+
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L-~~~g~~~V~v~~r~~~ra-~~la~~~g-------~---~~~~~~~~~~~l~~aDvVi  243 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHL-AAKGVAEITIANRTYERA-EELAKELG-------G---NAVPLDELLELLNEADVVI  243 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHH-HHcCCCEEEEEeCCHHHH-HHHHHHcC-------C---eEEeHHHHHHHHhcCCEEE
Confidence            6889999999999999999998 6766 4799999986431 23322221       1   1222346888899999999


Q ss_pred             EeC
Q 026023          242 TLC  244 (244)
Q Consensus       242 l~~  244 (244)
                      .+.
T Consensus       244 ~at  246 (311)
T cd05213         244 SAT  246 (311)
T ss_pred             ECC
Confidence            763

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.55  E-value=0.00028  Score=62.66  Aligned_cols=78  Identities=18%  Similarity=0.311  Sum_probs=50.6

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHH--HHHHhhhhhhhhcCC----CCCccccccCCHHHHhhhCCE
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL--EKFVTAYGQFLKANG----EQPVTWKRASSMDEVLREADV  239 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~l~ell~~sD~  239 (244)
                      ++|||||.|.+|..+|..+ ...|++|..||+++....  .......-....+.+    ...-......++++.++.||+
T Consensus         8 ~~VaVIGaG~MG~giA~~~-a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDl   86 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARA-LAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADF   86 (321)
T ss_pred             CEEEEECcCHHHHHHHHHH-HhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCE
Confidence            5899999999999999998 588999999999875421  111110000000010    000122345689999999999


Q ss_pred             EEEeC
Q 026023          240 VCTLC  244 (244)
Q Consensus       240 Vvl~~  244 (244)
                      |+-++
T Consensus        87 ViEav   91 (321)
T PRK07066         87 IQESA   91 (321)
T ss_pred             EEECC
Confidence            98653

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.54  E-value=0.003  Score=54.84  Aligned_cols=143  Identities=17%  Similarity=0.182  Sum_probs=88.2

Q ss_pred             HhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccH-HHHHHhhccCCcEEEEcccCCCccChHHH
Q 026023           34 IEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNAA  105 (244)
Q Consensus        34 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~-~~l~~~p~l~~k~I~~~~aG~d~id~~~~  105 (244)
                      ++.|++.+.+..++ ..+++++.+.+..     ..+++++..+  ..++. .+++..+..  |=       +|.+.....
T Consensus        57 ~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~--KD-------VDGl~~~n~  126 (281)
T PRK14183         57 DRVGIYSITHEMPS-TISQKEILETIAMMNNNPNIDGILVQLPLPKHIDTTKILEAIDPK--KD-------VDGFHPYNV  126 (281)
T ss_pred             HHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCccCeEEEeCCCCCCCCHHHHHhccCch--hc-------ccccChhhh
Confidence            44577776655544 2467777765432     4678888643  23443 344444443  32       222211111


Q ss_pred             hhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCC-hHHHHHHHHH
Q 026023          106 NKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYARMM  184 (244)
Q Consensus       106 ~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G-~IG~~vA~~l  184 (244)
                         |-...+. ..+.+.++.-++.++=.                         .+.++.||++.|+|-+ -+|+-+|.+|
T Consensus       127 ---g~l~~g~-~~~~PcTp~avi~lL~~-------------------------~~i~l~Gk~vvViGrS~~VG~Pla~lL  177 (281)
T PRK14183        127 ---GRLVTGL-DGFVPCTPLGVMELLEE-------------------------YEIDVKGKDVCVVGASNIVGKPMAALL  177 (281)
T ss_pred             ---hHHhcCC-CCCCCCcHHHHHHHHHH-------------------------cCCCCCCCEEEEECCCCcchHHHHHHH
Confidence               1111111 23566677666554321                         2347999999999999 7899999999


Q ss_pred             hccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          185 VEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       185 a~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                       ..-|+.|..+...                            ..+|.+..++||+|+..+
T Consensus       178 -~~~~AtVti~hs~----------------------------T~~l~~~~~~ADIvV~Av  208 (281)
T PRK14183        178 -LNANATVDICHIF----------------------------TKDLKAHTKKADIVIVGV  208 (281)
T ss_pred             -HHCCCEEEEeCCC----------------------------CcCHHHHHhhCCEEEEec
Confidence             7889999877532                            147999999999999864

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.54  E-value=0.00037  Score=59.06  Aligned_cols=67  Identities=15%  Similarity=0.249  Sum_probs=45.6

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCC---cE-EEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFK---MN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG---~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      +.+|||+|.|++|+.+++.+ ..-|   .+ ++.++|+..+..++..+.+            +.....+++++++++|+|
T Consensus         4 ~~kI~iIG~G~mg~ala~~l-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~DiV   70 (245)
T PRK07634          4 KHRILFIGAGRMAEAIFSGL-LKTSKEYIEEIIVSNRSNVEKLDQLQARY------------NVSTTTDWKQHVTSVDTI   70 (245)
T ss_pred             CCeEEEECcCHHHHHHHHHH-HhCCCCCcCeEEEECCCCHHHHHHHHHHc------------CcEEeCChHHHHhcCCEE
Confidence            46899999999999999987 3433   44 7778875333223322211            122346889999999999


Q ss_pred             EEeC
Q 026023          241 CTLC  244 (244)
Q Consensus       241 vl~~  244 (244)
                      ++++
T Consensus        71 iiav   74 (245)
T PRK07634         71 VLAM   74 (245)
T ss_pred             EEec
Confidence            9874

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.51  E-value=0.0033  Score=54.76  Aligned_cols=144  Identities=19%  Similarity=0.204  Sum_probs=89.9

Q ss_pred             HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccHH-HHHHhhccCCcEEEEcccCCCccChHH
Q 026023           33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVNA  104 (244)
Q Consensus        33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~~-~l~~~p~l~~k~I~~~~aG~d~id~~~  104 (244)
                      .++.|++++....++ ..+++++.+.+..     ..|++++..+  ..++.. +++..+..  |       =+|.+....
T Consensus        54 ~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--K-------DVDGl~~~N  123 (287)
T PRK14173         54 AKALGLRSQVEVLPE-STSQEELLELIARLNADPEVDGILVQLPLPPHIDFQRVLEAIDPL--K-------DVDGFHPLN  123 (287)
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--c-------cccccChhh
Confidence            345588777665544 2467777765542     4678888643  234433 44444443  3       222222111


Q ss_pred             HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHHH
Q 026023          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM  183 (244)
Q Consensus       105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~~  183 (244)
                      .   |-...+. ..+.+.++.-++.++=.                         .+.++.||++.|+|-+. +|+-+|.+
T Consensus       124 ~---g~l~~~~-~~~~PcTp~avi~lL~~-------------------------~~i~l~Gk~vvViGrS~iVGkPla~l  174 (287)
T PRK14173        124 V---GRLWMGG-EALEPCTPAGVVRLLKH-------------------------YGIPLAGKEVVVVGRSNIVGKPLAAL  174 (287)
T ss_pred             h---HHHhcCC-CCCCCCCHHHHHHHHHH-------------------------cCCCCCCCEEEEECCCCccHHHHHHH
Confidence            1   1111111 23567777776665432                         23569999999999876 69999999


Q ss_pred             HhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       184 la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      | ..-|+.|..+....                            .+|.+..++||+|+..+
T Consensus       175 L-~~~~aTVtichs~T----------------------------~~l~~~~~~ADIvIsAv  206 (287)
T PRK14173        175 L-LREDATVTLAHSKT----------------------------QDLPAVTRRADVLVVAV  206 (287)
T ss_pred             H-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEec
Confidence            9 78899998876531                            37999999999999864

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.51  E-value=0.0035  Score=54.91  Aligned_cols=144  Identities=19%  Similarity=0.167  Sum_probs=90.2

Q ss_pred             HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccH-HHHHHhhccCCcEEEEcccCCCccChHH
Q 026023           33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA  104 (244)
Q Consensus        33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~-~~l~~~p~l~~k~I~~~~aG~d~id~~~  104 (244)
                      .++.|++.+.+..++ ..+++++.+.+..     ..+++++..+  ..+++ .+++..+..  |=       +|.+....
T Consensus        57 a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~--KD-------VDGl~~~n  126 (297)
T PRK14186         57 CARVGIASFGKHLPA-DTSQAEVEALIAQLNQDERVDGILLQLPLPKHLDEVPLLHAIDPD--KD-------ADGLHPLN  126 (297)
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cC-------cccCChhh
Confidence            345587777665543 3477777765542     4578888643  23443 345555444  32       23222111


Q ss_pred             HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHHH
Q 026023          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM  183 (244)
Q Consensus       105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~~  183 (244)
                      .   |-...+. ..+.+++|.-++.++=.                         .+.++.||++.|+|-+. +|+-+|.+
T Consensus       127 ~---g~l~~~~-~~~~PcTp~aii~lL~~-------------------------~~i~l~Gk~vvVIGrS~iVGkPla~l  177 (297)
T PRK14186        127 L---GRLVKGE-PGLRSCTPAGVMRLLRS-------------------------QQIDIAGKKAVVVGRSILVGKPLALM  177 (297)
T ss_pred             H---HHHhCCC-CCCCCCCHHHHHHHHHH-------------------------hCCCCCCCEEEEECCCccchHHHHHH
Confidence            1   1111112 23456777666655422                         23579999999999987 59999999


Q ss_pred             HhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       184 la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      | ..-|+.|..+....                            .+|.+..++||+|+..+
T Consensus       178 L-~~~~atVtv~hs~T----------------------------~~l~~~~~~ADIvIsAv  209 (297)
T PRK14186        178 L-LAANATVTIAHSRT----------------------------QDLASITREADILVAAA  209 (297)
T ss_pred             H-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEcc
Confidence            9 78899998886431                            37999999999999864

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.51  E-value=0.0035  Score=54.34  Aligned_cols=144  Identities=17%  Similarity=0.219  Sum_probs=90.0

Q ss_pred             HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccHH-HHHHhhccCCcEEEEcccCCCccChHH
Q 026023           33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVNA  104 (244)
Q Consensus        33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~~-~l~~~p~l~~k~I~~~~aG~d~id~~~  104 (244)
                      .++.|++++....++ ..+++++.+.+..     +.+++++..+  ..++.. +++..+..  |       =+|.+-...
T Consensus        57 a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~--K-------DVDGl~~~n  126 (278)
T PRK14172         57 ANSLGIDFKKIKLDE-SISEEDLINEIEELNKDNNVHGIMLQLPLPKHLDEKKITNKIDAN--K-------DIDCLTFIS  126 (278)
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc--c-------ccCccCHhh
Confidence            345587777665543 3577777765543     4578888743  234433 44444443  3       222221111


Q ss_pred             HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHHH
Q 026023          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM  183 (244)
Q Consensus       105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~~  183 (244)
                      .   |-...+-+ .+.+.++.-++.++=.                         .+.++.||++.|+|-+. +|+-+|.+
T Consensus       127 ~---g~l~~g~~-~~~PcTp~av~~lL~~-------------------------~~i~l~Gk~vvViGrS~~VGkPla~l  177 (278)
T PRK14172        127 V---GKFYKGEK-CFLPCTPNSVITLIKS-------------------------LNIDIEGKEVVVIGRSNIVGKPVAQL  177 (278)
T ss_pred             H---HHHhCCCC-CCcCCCHHHHHHHHHH-------------------------hCCCCCCCEEEEECCCccchHHHHHH
Confidence            1   11111112 3466677666554422                         23469999999999987 69999999


Q ss_pred             HhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       184 la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      | ..-|+.|..+..+.                            .+|.+..++||+|+..+
T Consensus       178 L-~~~~AtVt~chs~T----------------------------~~l~~~~~~ADIvIsAv  209 (278)
T PRK14172        178 L-LNENATVTICHSKT----------------------------KNLKEVCKKADILVVAI  209 (278)
T ss_pred             H-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEcC
Confidence            9 78899999887531                            37999999999999764

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=97.50  E-value=0.00023  Score=65.58  Aligned_cols=70  Identities=26%  Similarity=0.341  Sum_probs=52.0

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      .+.|++|+|+|.|.+|+.+++.| +..|+ +|..++|++... +++...+|       .   ......++.+.+.++|+|
T Consensus       179 ~~~~~~vlViGaG~iG~~~a~~L-~~~G~~~V~v~~r~~~ra-~~la~~~g-------~---~~~~~~~~~~~l~~aDvV  246 (423)
T PRK00045        179 DLSGKKVLVIGAGEMGELVAKHL-AEKGVRKITVANRTLERA-EELAEEFG-------G---EAIPLDELPEALAEADIV  246 (423)
T ss_pred             CccCCEEEEECchHHHHHHHHHH-HHCCCCeEEEEeCCHHHH-HHHHHHcC-------C---cEeeHHHHHHHhccCCEE
Confidence            37889999999999999999998 79998 799999986442 22222221       1   122335678889999999


Q ss_pred             EEe
Q 026023          241 CTL  243 (244)
Q Consensus       241 vl~  243 (244)
                      +.+
T Consensus       247 I~a  249 (423)
T PRK00045        247 ISS  249 (423)
T ss_pred             EEC
Confidence            976

>PRK08655 prephenate dehydrogenase; Provisional

Probab=97.49  E-value=0.0003  Score=65.11  Aligned_cols=64  Identities=17%  Similarity=0.282  Sum_probs=48.3

Q ss_pred             EEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          167 TVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       167 tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +|+|+| +|.+|+.+|+.| +..|.+|.+++|++... .+....+            +.....++.+.+.+||+|++++
T Consensus         2 kI~IIGG~G~mG~slA~~L-~~~G~~V~v~~r~~~~~-~~~a~~~------------gv~~~~~~~e~~~~aDvVIlav   66 (437)
T PRK08655          2 KISIIGGTGGLGKWFARFL-KEKGFEVIVTGRDPKKG-KEVAKEL------------GVEYANDNIDAAKDADIVIISV   66 (437)
T ss_pred             EEEEEecCCHHHHHHHHHH-HHCCCEEEEEECChHHH-HHHHHHc------------CCeeccCHHHHhccCCEEEEec
Confidence            799997 899999999998 89999999999986431 1211111            1223457889999999999875

>PLN00203 glutamyl-tRNA reductase

Probab=97.48  E-value=0.0003  Score=66.31  Aligned_cols=73  Identities=21%  Similarity=0.273  Sum_probs=53.7

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      ++.+++|+|+|.|.+|+.+++.| ...|+ +|..++|+... .+.+...+       +.....+...+++.+.+.++|+|
T Consensus       263 ~l~~kkVlVIGAG~mG~~~a~~L-~~~G~~~V~V~nRs~er-a~~La~~~-------~g~~i~~~~~~dl~~al~~aDVV  333 (519)
T PLN00203        263 SHASARVLVIGAGKMGKLLVKHL-VSKGCTKMVVVNRSEER-VAALREEF-------PDVEIIYKPLDEMLACAAEADVV  333 (519)
T ss_pred             CCCCCEEEEEeCHHHHHHHHHHH-HhCCCCeEEEEeCCHHH-HHHHHHHh-------CCCceEeecHhhHHHHHhcCCEE
Confidence            37899999999999999999998 78998 69999998754 23322222       11111223446788999999999


Q ss_pred             EEe
Q 026023          241 CTL  243 (244)
Q Consensus       241 vl~  243 (244)
                      +.+
T Consensus       334 IsA  336 (519)
T PLN00203        334 FTS  336 (519)
T ss_pred             EEc
Confidence            876

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=97.47  E-value=0.00019  Score=62.99  Aligned_cols=63  Identities=22%  Similarity=0.380  Sum_probs=44.8

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHH---hhhCCEEEEe
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV---LREADVVCTL  243 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el---l~~sD~Vvl~  243 (244)
                      +|||||+|++|..+|+.| ...|.+|.+|||++.. .++..+        .+     .....+++++   ++++|+|+++
T Consensus         2 ~Ig~IGlG~mG~~la~~L-~~~g~~V~~~dr~~~~-~~~l~~--------~g-----~~~~~s~~~~~~~~~~~dvIi~~   66 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRL-AKRGHDCVGYDHDQDA-VKAMKE--------DR-----TTGVANLRELSQRLSAPRVVWVM   66 (298)
T ss_pred             EEEEEcchHHHHHHHHHH-HHCCCEEEEEECCHHH-HHHHHH--------cC-----CcccCCHHHHHhhcCCCCEEEEE
Confidence            699999999999999998 6789999999998754 222211        11     1112355554   4568999987


Q ss_pred             C
Q 026023          244 C  244 (244)
Q Consensus       244 ~  244 (244)
                      +
T Consensus        67 v   67 (298)
T TIGR00872        67 V   67 (298)
T ss_pred             c
Confidence            4

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=97.47  E-value=0.00045  Score=59.67  Aligned_cols=64  Identities=23%  Similarity=0.405  Sum_probs=44.7

Q ss_pred             EEEEEcCChHHHHHHHHHhccC--CcEEE-EEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          167 TVGVIGAGRIGSAYARMMVEGF--KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~af--G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      ++||+|+|+||+.+++.+ ...  ++++. .+|+++.. .+++.+.+            +...+.++++++.++|+|+++
T Consensus         3 rIgIIG~G~iG~~ia~~l-~~~~~~~elv~v~d~~~~~-a~~~a~~~------------~~~~~~~~~ell~~~DvVvi~   68 (265)
T PRK13304          3 KIGIVGCGAIASLITKAI-LSGRINAELYAFYDRNLEK-AENLASKT------------GAKACLSIDELVEDVDLVVEC   68 (265)
T ss_pred             EEEEECccHHHHHHHHHH-HcCCCCeEEEEEECCCHHH-HHHHHHhc------------CCeeECCHHHHhcCCCEEEEc
Confidence            799999999999999987 443  67744 57776543 22222211            122346899999999999986


Q ss_pred             C
Q 026023          244 C  244 (244)
Q Consensus       244 ~  244 (244)
                      .
T Consensus        69 a   69 (265)
T PRK13304         69 A   69 (265)
T ss_pred             C
Confidence            3

>PLN02858 fructose-bisphosphate aldolase

Probab=97.46  E-value=0.00024  Score=73.94  Aligned_cols=65  Identities=25%  Similarity=0.379  Sum_probs=51.2

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      .++||+||+|++|..+|+.| ...|.+|.+|||++... +++.+        .     +....++..+++++||+|++++
T Consensus       324 ~~~IGfIGlG~MG~~mA~~L-~~~G~~V~v~dr~~~~~-~~l~~--------~-----Ga~~~~s~~e~~~~aDvVi~~V  388 (1378)
T PLN02858        324 VKRIGFIGLGAMGFGMASHL-LKSNFSVCGYDVYKPTL-VRFEN--------A-----GGLAGNSPAEVAKDVDVLVIMV  388 (1378)
T ss_pred             CCeEEEECchHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHHH--------c-----CCeecCCHHHHHhcCCEEEEec
Confidence            47899999999999999998 79999999999987542 22111        1     1223468999999999999975

>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]

Probab=97.45  E-value=0.0003  Score=61.11  Aligned_cols=66  Identities=23%  Similarity=0.440  Sum_probs=52.4

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC  241 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv  241 (244)
                      -+.||.+.|.|||..|+-.|..| ++||++|+...-.|--......+               .....+|+|..++.|+++
T Consensus       211 M~aGKv~Vv~GYGdVGKgCaqaL-kg~g~~VivTEiDPI~ALQAaMe---------------G~~V~tm~ea~~e~difV  274 (434)
T KOG1370|consen  211 MIAGKVAVVCGYGDVGKGCAQAL-KGFGARVIVTEIDPICALQAAME---------------GYEVTTLEEAIREVDIFV  274 (434)
T ss_pred             eecccEEEEeccCccchhHHHHH-hhcCcEEEEeccCchHHHHHHhh---------------ccEeeeHHHhhhcCCEEE
Confidence            46899999999999999999999 99999999987766432222222               224568999999999998


Q ss_pred             Ee
Q 026023          242 TL  243 (244)
Q Consensus       242 l~  243 (244)
                      -+
T Consensus       275 Tt  276 (434)
T KOG1370|consen  275 TT  276 (434)
T ss_pred             Ec
Confidence            64

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.44  E-value=0.00019  Score=61.59  Aligned_cols=65  Identities=18%  Similarity=0.225  Sum_probs=45.2

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCc---EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKM---NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~---~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      +|||||+|++|+.+++.| ..-|.   .+.+++|++.. .+++.+.+       .    +.....+..++++++|+|+++
T Consensus         2 ~IgiIG~G~mG~aia~~L-~~~g~~~~~i~v~~r~~~~-~~~l~~~~-------~----~~~~~~~~~~~~~~aDvVila   68 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGL-LTSPADVSEIIVSPRNAQI-AARLAERF-------P----KVRIAKDNQAVVDRSDVVFLA   68 (258)
T ss_pred             eEEEECcCHHHHHHHHHH-HhCCCChheEEEECCCHHH-HHHHHHHc-------C----CceEeCCHHHHHHhCCEEEEE
Confidence            699999999999999998 55553   35788887543 22222111       0    122346889999999999987


Q ss_pred             C
Q 026023          244 C  244 (244)
Q Consensus       244 ~  244 (244)
                      +
T Consensus        69 v   69 (258)
T PRK06476         69 V   69 (258)
T ss_pred             e
Confidence            4

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.43  E-value=0.00047  Score=60.68  Aligned_cols=77  Identities=19%  Similarity=0.299  Sum_probs=49.5

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHh----hhhhhhhcCCC-C-CccccccCCHHHHhhhCCE
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT----AYGQFLKANGE-Q-PVTWKRASSMDEVLREADV  239 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~-~~~~~~~~~l~ell~~sD~  239 (244)
                      ++|+|||.|.+|..+|..| ..-|.+|..+|++.... +...+    ..+........ . ........++.+.+++||+
T Consensus         5 ~~I~vIGaG~mG~~iA~~l-~~~g~~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDl   82 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALF-ARKGLQVVLIDVMEGAL-ERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADL   82 (311)
T ss_pred             cEEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHHH-HHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCE
Confidence            5799999999999999998 67899999999976541 21111    11110000000 0 0001233578889999999


Q ss_pred             EEEeC
Q 026023          240 VCTLC  244 (244)
Q Consensus       240 Vvl~~  244 (244)
                      |++++
T Consensus        83 Vi~av   87 (311)
T PRK06130         83 VIEAV   87 (311)
T ss_pred             EEEec
Confidence            99874

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=97.43  E-value=0.0003  Score=58.76  Aligned_cols=92  Identities=14%  Similarity=0.181  Sum_probs=60.8

Q ss_pred             CCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHH-hccCCcEEEE-Ec
Q 026023          119 LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMM-VEGFKMNLIY-YD  196 (244)
Q Consensus       119 ~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~IG~~vA~~l-a~afG~~V~~-~~  196 (244)
                      .+.+.++|.+..++...|++.         .   +.         ..++++|+|+|.+|+.+++.+ ....|+++.+ +|
T Consensus        59 ~G~~~~gy~v~~l~~~~~~~l---------~---~~---------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D  117 (213)
T PRK05472         59 FGKRGVGYNVEELLEFIEKIL---------G---LD---------RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFD  117 (213)
T ss_pred             cCCCCCCeeHHHHHHHHHHHh---------C---CC---------CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEE
Confidence            345556699999999888874         1   10         235899999999999999852 1467898776 56


Q ss_pred             CCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhh--CCEEEEeC
Q 026023          197 LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVVCTLC  244 (244)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--sD~Vvl~~  244 (244)
                      +.+... .       .     .....++...+++.+++++  .|.|++++
T Consensus       118 ~d~~~~-~-------~-----~i~g~~v~~~~~l~~li~~~~iD~ViIa~  154 (213)
T PRK05472        118 VDPEKI-G-------T-----KIGGIPVYHIDELEEVVKENDIEIGILTV  154 (213)
T ss_pred             CChhhc-C-------C-----EeCCeEEcCHHHHHHHHHHCCCCEEEEeC
Confidence            543221 0       0     0011223345678999876  99998864

>PRK07680 late competence protein ComER; Validated

Probab=97.41  E-value=0.00063  Score=58.86  Aligned_cols=65  Identities=18%  Similarity=0.294  Sum_probs=46.6

Q ss_pred             EEEEEcCChHHHHHHHHHhccCC----cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG----~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      ++||||+|++|+.+++.| ..-|    ..|.+++|++.. .+...+.+           .+.....+..++++++|+|++
T Consensus         2 ~I~iIG~G~mG~ala~~L-~~~g~~~~~~v~v~~r~~~~-~~~~~~~~-----------~g~~~~~~~~~~~~~aDiVil   68 (273)
T PRK07680          2 NIGFIGTGNMGTILIEAF-LESGAVKPSQLTITNRTPAK-AYHIKERY-----------PGIHVAKTIEEVISQSDLIFI   68 (273)
T ss_pred             EEEEECccHHHHHHHHHH-HHCCCCCcceEEEECCCHHH-HHHHHHHc-----------CCeEEECCHHHHHHhCCEEEE
Confidence            699999999999999998 5666    379999998643 22221111           012234578899999999998


Q ss_pred             eC
Q 026023          243 LC  244 (244)
Q Consensus       243 ~~  244 (244)
                      ++
T Consensus        69 av   70 (273)
T PRK07680         69 CV   70 (273)
T ss_pred             ec
Confidence            74

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.40  E-value=0.0052  Score=53.43  Aligned_cols=144  Identities=16%  Similarity=0.212  Sum_probs=89.7

Q ss_pred             HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccCc--cccH-HHHHHhhccCCcEEEEcccCCCccChHH
Q 026023           33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLTE--DWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA  104 (244)
Q Consensus        33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~~--~~~~-~~l~~~p~l~~k~I~~~~aG~d~id~~~  104 (244)
                      .++.|++++.+..++ ..+++++.+.+..     ..|++++..+.  .+++ .+++..+..  |=       +|.+....
T Consensus        58 ~~~~Gi~~~~~~l~~-~~s~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~--KD-------VDGl~~~n  127 (284)
T PRK14177         58 CHKVGMGSEMIRLKE-QTTTEELLGVIDKLNLDPNVDGILLQHPVPSQIDERAAFDRIALE--KD-------VDGVTTLS  127 (284)
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc--cc-------cccCChhh
Confidence            455688877665544 2477777665432     56888886432  2433 344444443  32       22222111


Q ss_pred             HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHHH
Q 026023          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM  183 (244)
Q Consensus       105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~~  183 (244)
                      .   |-...+. ..+.+.++.-++.++=.                         .+.++.||++.|+|-+. +|+-+|.+
T Consensus       128 ~---g~l~~g~-~~~~PcTp~avi~ll~~-------------------------y~i~l~Gk~vvViGrS~iVGkPla~l  178 (284)
T PRK14177        128 F---GKLSMGV-ETYLPCTPYGMVLLLKE-------------------------YGIDVTGKNAVVVGRSPILGKPMAML  178 (284)
T ss_pred             H---HHHHcCC-CCCCCCCHHHHHHHHHH-------------------------hCCCCCCCEEEEECCCCcchHHHHHH
Confidence            1   1111121 23466677666553321                         23469999999999987 69999999


Q ss_pred             HhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       184 la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      | ..-|+.|..++...                            .+|.+..++||+|+..+
T Consensus       179 L-~~~~atVt~chs~T----------------------------~~l~~~~~~ADIvIsAv  210 (284)
T PRK14177        179 L-TEMNATVTLCHSKT----------------------------QNLPSIVRQADIIVGAV  210 (284)
T ss_pred             H-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEeC
Confidence            9 78899999887532                            47999999999999764

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=97.38  E-value=0.00047  Score=58.22  Aligned_cols=37  Identities=24%  Similarity=0.288  Sum_probs=33.5

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCC
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~  198 (244)
                      .++.|+++.|.|||++|+.+|++| ..+|++|+++..+
T Consensus        27 ~~l~~~~v~I~G~G~VG~~~a~~L-~~~g~~vv~v~D~   63 (227)
T cd01076          27 IGLAGARVAIQGFGNVGSHAARFL-HEAGAKVVAVSDS   63 (227)
T ss_pred             CCccCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECC
Confidence            358999999999999999999998 8999999977665

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PRK08507 prephenate dehydrogenase; Validated

Probab=97.37  E-value=0.00059  Score=59.12  Aligned_cols=63  Identities=22%  Similarity=0.334  Sum_probs=43.1

Q ss_pred             EEEEEcCChHHHHHHHHHhccCC--cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +|+|||+|.+|+.+|+.| +.-|  .+|.++|+++... +.. ...       +.  .  ....++.++. ++|+|++++
T Consensus         2 ~I~iIG~G~mG~sla~~l-~~~g~~~~v~~~d~~~~~~-~~~-~~~-------g~--~--~~~~~~~~~~-~aD~Vilav   66 (275)
T PRK08507          2 KIGIIGLGLMGGSLGLAL-KEKGLISKVYGYDHNELHL-KKA-LEL-------GL--V--DEIVSFEELK-KCDVIFLAI   66 (275)
T ss_pred             EEEEEccCHHHHHHHHHH-HhcCCCCEEEEEcCCHHHH-HHH-HHC-------CC--C--cccCCHHHHh-cCCEEEEeC
Confidence            699999999999999998 5556  4899999986542 111 111       11  0  0123677765 499999975

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=97.37  E-value=0.0004  Score=60.43  Aligned_cols=67  Identities=27%  Similarity=0.306  Sum_probs=44.1

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCCcEE--EEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCC-HHHHhhhCCEEE
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFKMNL--IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS-MDEVLREADVVC  241 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG~~V--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~ell~~sD~Vv  241 (244)
                      ..+|+|+|+|.||+.+|+.| +.-|..+  +++|++........            ...+......+ +.+.++.+|+|+
T Consensus         3 ~~~v~IvG~GliG~s~a~~l-~~~g~~v~i~g~d~~~~~~~~a~------------~lgv~d~~~~~~~~~~~~~aD~Vi   69 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARAL-KEAGLVVRIIGRDRSAATLKAAL------------ELGVIDELTVAGLAEAAAEADLVI   69 (279)
T ss_pred             CcEEEEECCchHHHHHHHHH-HHcCCeEEEEeecCcHHHHHHHh------------hcCcccccccchhhhhcccCCEEE
Confidence            35899999999999999998 8999977  55555443321110            01111111123 378888999999


Q ss_pred             EeC
Q 026023          242 TLC  244 (244)
Q Consensus       242 l~~  244 (244)
                      +++
T Consensus        70 vav   72 (279)
T COG0287          70 VAV   72 (279)
T ss_pred             Eec
Confidence            975

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=97.37  E-value=0.00057  Score=60.52  Aligned_cols=63  Identities=16%  Similarity=0.280  Sum_probs=45.7

Q ss_pred             CEEEEEcCChHHHHHHHHHhccC-CcEEEE-EcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGF-KMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~af-G~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      .+|||+|+|+||+.+++.+ ... ++++.+ +++++.....+               ..++....+.++++.+.|+|++|
T Consensus         4 IRVgIVG~GnIGr~~a~al-~~~pd~ELVgV~dr~~~~~~~~---------------~~~v~~~~d~~e~l~~iDVViIc   67 (324)
T TIGR01921         4 IRAAIVGYGNLGRSVEKAI-QQQPDMELVGVFSRRGAETLDT---------------ETPVYAVADDEKHLDDVDVLILC   67 (324)
T ss_pred             cEEEEEeecHHHHHHHHHH-HhCCCcEEEEEEcCCcHHHHhh---------------cCCccccCCHHHhccCCCEEEEc
Confidence            5899999999999999998 555 899887 57774221111               12233345788888999999987


Q ss_pred             C
Q 026023          244 C  244 (244)
Q Consensus       244 ~  244 (244)
                      +
T Consensus        68 t   68 (324)
T TIGR01921        68 M   68 (324)
T ss_pred             C
Confidence            4

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.34  E-value=0.0081  Score=52.62  Aligned_cols=145  Identities=16%  Similarity=0.212  Sum_probs=88.4

Q ss_pred             HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccH-HHHHHhhccCCcEEEEcccCCCccChHH
Q 026023           33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA  104 (244)
Q Consensus        33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~-~~l~~~p~l~~k~I~~~~aG~d~id~~~  104 (244)
                      .++.|++.+....++ ..+++++.+.+..     ..+++++..+  ..+++ .+++.++..  |=       +|.+....
T Consensus        56 ~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~i~~~~i~~~I~p~--KD-------VDGl~~~n  125 (297)
T PRK14167         56 CEEVGIEAIDVEIDP-DAPAEELYDTIDELNADEDVHGILVQMPVPDHVDDREVLRRIDPA--KD-------VDGFHPEN  125 (297)
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcc--cC-------cccCChhh
Confidence            355688877666544 3467777765543     4578888743  23443 344444443  32       22221111


Q ss_pred             HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHHH
Q 026023          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM  183 (244)
Q Consensus       105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~~  183 (244)
                      .   |-...+. ..+.+.++.-++.++=.                         .+.++.||++.|+|-+. +|+-+|.+
T Consensus       126 ~---g~l~~g~-~~~~PcTp~avi~lL~~-------------------------~~i~l~Gk~vvViGrS~iVGkPla~l  176 (297)
T PRK14167        126 V---GRLVAGD-ARFKPCTPHGIQKLLAA-------------------------AGVDTEGADVVVVGRSDIVGKPMANL  176 (297)
T ss_pred             h---HHHhCCC-CCCCCCCHHHHHHHHHH-------------------------hCCCCCCCEEEEECCCcccHHHHHHH
Confidence            1   1111121 23567777766655422                         23469999999999987 69999999


Q ss_pred             HhccC---CcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          184 MVEGF---KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       184 la~af---G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      |.+.+   ++.|..+...                            ..+|.+..++||+|+..+
T Consensus       177 L~~~~~~~~aTVtvchs~----------------------------T~~l~~~~~~ADIvIsAv  212 (297)
T PRK14167        177 LIQKADGGNATVTVCHSR----------------------------TDDLAAKTRRADIVVAAA  212 (297)
T ss_pred             HhcCccCCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEcc
Confidence            84333   8999887543                            147999999999999853

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=97.34  E-value=0.0072  Score=52.94  Aligned_cols=145  Identities=16%  Similarity=0.193  Sum_probs=89.1

Q ss_pred             HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccH-HHHHHhhccCCcEEEEcccCCCccChHH
Q 026023           33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA  104 (244)
Q Consensus        33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~-~~l~~~p~l~~k~I~~~~aG~d~id~~~  104 (244)
                      .++.|++.+.+..++ ..+++++.+.+..     .++++++..+  ..+++ .+++..+..  |       =+|.+....
T Consensus        64 a~~~Gi~~~~~~l~~-~~s~~el~~~I~~lN~D~~V~GIlvq~PlP~~id~~~i~~~I~p~--K-------DVDGl~~~n  133 (299)
T PLN02516         64 CAEVGIKSFDVDLPE-NISEAELISKVHELNANPDVHGILVQLPLPKHINEEKILNEISLE--K-------DVDGFHPLN  133 (299)
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCcCHHHHHhccCcc--c-------ccCccCHhh
Confidence            345577776655543 3477777766543     4578888643  23443 344444433  3       223222111


Q ss_pred             HhhCCcEEEe-cCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHH
Q 026023          105 ANKYGIAVGN-TPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYAR  182 (244)
Q Consensus       105 ~~~~gI~v~n-~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~  182 (244)
                      .   |-...+ ....+.++++.-++.++=.                         .+.++.||++.|+|-+. +|+-+|.
T Consensus       134 ~---g~l~~~~~~~~~~PcTp~avi~lL~~-------------------------~~i~l~Gk~vvVIGRS~iVGkPla~  185 (299)
T PLN02516        134 I---GKLAMKGREPLFLPCTPKGCLELLSR-------------------------SGIPIKGKKAVVVGRSNIVGLPVSL  185 (299)
T ss_pred             H---hhHhcCCCCCCCCCCCHHHHHHHHHH-------------------------hCCCCCCCEEEEECCCccchHHHHH
Confidence            1   111111 0123467777765554321                         23579999999999987 5999999


Q ss_pred             HHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       183 ~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +| ..-|+.|..+....                            .++++..++||+|+..+
T Consensus       186 lL-~~~~ATVtvchs~T----------------------------~nl~~~~~~ADIvv~Av  218 (299)
T PLN02516        186 LL-LKADATVTVVHSRT----------------------------PDPESIVREADIVIAAA  218 (299)
T ss_pred             HH-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEcC
Confidence            99 78899999886431                            37999999999999764

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.34  E-value=0.00065  Score=59.22  Aligned_cols=77  Identities=17%  Similarity=0.222  Sum_probs=49.6

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhc---CC-CC-------CccccccCCHHHHh
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA---NG-EQ-------PVTWKRASSMDEVL  234 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~-------~~~~~~~~~l~ell  234 (244)
                      ++|+|||.|.+|..+|..| ..-|.+|+.||+++... +...+........   .+ ..       ........++++.+
T Consensus         2 ~~V~VIG~G~mG~~iA~~l-a~~G~~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   79 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVF-AVSGFQTTLVDIKQEQL-ESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAV   79 (288)
T ss_pred             cEEEEECccHHHHHHHHHH-HhCCCcEEEEeCCHHHH-HHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhh
Confidence            5799999999999999998 57799999999987542 2211100000000   00 00       00112346888999


Q ss_pred             hhCCEEEEeC
Q 026023          235 READVVCTLC  244 (244)
Q Consensus       235 ~~sD~Vvl~~  244 (244)
                      ++||+|+.++
T Consensus        80 ~~aD~Vi~av   89 (288)
T PRK09260         80 ADADLVIEAV   89 (288)
T ss_pred             cCCCEEEEec
Confidence            9999999874

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=97.33  E-value=0.00071  Score=59.64  Aligned_cols=76  Identities=21%  Similarity=0.238  Sum_probs=48.9

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHh----hhhhhhhcCCCCC--------ccccccCCHHHH
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT----AYGQFLKANGEQP--------VTWKRASSMDEV  233 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--------~~~~~~~~l~el  233 (244)
                      ++|+|+|.|.+|..+|..| ..-|.+|++||+++... +....    .+..+. ..+...        -......++.+.
T Consensus         3 ~~V~VIG~G~mG~~iA~~l-a~~G~~V~v~d~~~~~~-~~~~~~~~~~l~~l~-~~g~~~~~~~~~~~~~i~~~~~~~~a   79 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVF-ARAGHEVRLWDADPAAA-AAAPAYIAGRLEDLA-AFDLLDGEAPDAVLARIRVTDSLADA   79 (308)
T ss_pred             cEEEEECccHHHHHHHHHH-HHCCCeeEEEeCCHHHH-HHHHHHHHHHHHHHH-HcCCCchhhHHHHhcCeEEECcHHHh
Confidence            3799999999999999998 67799999999986431 11000    000000 011000        001234689999


Q ss_pred             hhhCCEEEEeC
Q 026023          234 LREADVVCTLC  244 (244)
Q Consensus       234 l~~sD~Vvl~~  244 (244)
                      ++.||+|+.++
T Consensus        80 ~~~ad~Vi~av   90 (308)
T PRK06129         80 VADADYVQESA   90 (308)
T ss_pred             hCCCCEEEECC
Confidence            99999998763

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.32  E-value=0.00082  Score=55.07  Aligned_cols=80  Identities=20%  Similarity=0.238  Sum_probs=50.9

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (244)
Q Consensus       161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~  239 (244)
                      ..+.++++.|+|. |.+|+.+++.| ...|.+|..++|+... .++..+.+.... ............+++.+.++++|+
T Consensus        24 ~~l~~~~vlVlGgtG~iG~~~a~~l-~~~g~~V~l~~R~~~~-~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~di  100 (194)
T cd01078          24 KDLKGKTAVVLGGTGPVGQRAAVLL-AREGARVVLVGRDLER-AQKAADSLRARF-GEGVGAVETSDDAARAAAIKGADV  100 (194)
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEcCCHHH-HHHHHHHHHhhc-CCcEEEeeCCCHHHHHHHHhcCCE
Confidence            3578899999995 99999999998 6789999999998643 233322221000 000001111222455688999998


Q ss_pred             EEEe
Q 026023          240 VCTL  243 (244)
Q Consensus       240 Vvl~  243 (244)
                      |+.+
T Consensus       101 Vi~a  104 (194)
T cd01078         101 VFAA  104 (194)
T ss_pred             EEEC
Confidence            8764

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=97.32  E-value=0.00087  Score=57.80  Aligned_cols=65  Identities=26%  Similarity=0.358  Sum_probs=50.1

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCC----cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC  241 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG----~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv  241 (244)
                      .++|++|+|++|+.++.-| ..-|    -+|++.+|+..... ...+.||            .....+..++..++|+|+
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl-~~~g~~~~~~I~v~~~~~e~~~-~l~~~~g------------~~~~~~~~~~~~~advv~   67 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGL-LKSGALPPEEIIVTNRSEEKRA-ALAAEYG------------VVTTTDNQEAVEEADVVF   67 (266)
T ss_pred             ceEEEEccCHHHHHHHHHH-HhcCCCCcceEEEeCCCHHHHH-HHHHHcC------------CcccCcHHHHHhhCCEEE
Confidence            4799999999999999998 7777    58999999876532 3333432            112568899999999999


Q ss_pred             EeC
Q 026023          242 TLC  244 (244)
Q Consensus       242 l~~  244 (244)
                      +++
T Consensus        68 Lav   70 (266)
T COG0345          68 LAV   70 (266)
T ss_pred             EEe
Confidence            975

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.32  E-value=0.001  Score=59.07  Aligned_cols=76  Identities=18%  Similarity=0.197  Sum_probs=49.3

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhc-CCCC-CccccccCCHHHHhhhCCEEEEe
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-NGEQ-PVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      .+|+|+|.|.+|..+|..| ..-|.+|..|+|++... +.... .+..... .+.. ........++.+.++.+|+|+++
T Consensus         5 m~I~iIG~G~mG~~ia~~L-~~~G~~V~~~~r~~~~~-~~i~~-~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~   81 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLA-ASKGVPVRLWARRPEFA-AALAA-ERENREYLPGVALPAELYPTADPEEALAGADFAVVA   81 (328)
T ss_pred             CeEEEECcCHHHHHHHHHH-HHCCCeEEEEeCCHHHH-HHHHH-hCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEE
Confidence            4799999999999999998 57799999999976431 22111 0000000 0000 00122446899999999999987


Q ss_pred             C
Q 026023          244 C  244 (244)
Q Consensus       244 ~  244 (244)
                      +
T Consensus        82 v   82 (328)
T PRK14618         82 V   82 (328)
T ss_pred             C
Confidence            4

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.31  E-value=0.0087  Score=52.09  Aligned_cols=143  Identities=20%  Similarity=0.216  Sum_probs=88.3

Q ss_pred             HhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccH-HHHHHhhccCCcEEEEcccCCCccChHHH
Q 026023           34 IEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNAA  105 (244)
Q Consensus        34 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~-~~l~~~p~l~~k~I~~~~aG~d~id~~~~  105 (244)
                      ++.|++.+.+..++ ..+++++.+.+..     .++++++..+  ..++. ++++..+..  |=       +|.+.....
T Consensus        58 ~~~Gi~~~~~~l~~-~~t~~el~~~I~~lN~D~~V~GIlvqlPlP~~id~~~i~~~I~p~--KD-------VDGl~~~n~  127 (284)
T PRK14193         58 AEVGITSIRRDLPA-DATQEELNAVIDELNADPACTGYIVQLPLPKHLDENAVLERIDPA--KD-------ADGLHPTNL  127 (284)
T ss_pred             HHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--cC-------ccCCChhhh
Confidence            44577776655443 3577777765543     4578888643  23443 345555444  32       222211111


Q ss_pred             hhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHHHH
Q 026023          106 NKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARMM  184 (244)
Q Consensus       106 ~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~~l  184 (244)
                         |-...+.++ +.++++.-++.++=.                         .+.++.||++.|+|-+. +|+-+|.+|
T Consensus       128 ---g~l~~~~~~-~~PcTp~av~~ll~~-------------------------~~i~l~Gk~vvViGrS~~VGkPla~lL  178 (284)
T PRK14193        128 ---GRLVLNEPA-PLPCTPRGIVHLLRR-------------------------YDVELAGAHVVVIGRGVTVGRPIGLLL  178 (284)
T ss_pred             ---hHHhCCCCC-CCCCCHHHHHHHHHH-------------------------hCCCCCCCEEEEECCCCcchHHHHHHH
Confidence               111122222 356677766655421                         23579999999999876 699999998


Q ss_pred             hcc--CCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          185 VEG--FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       185 a~a--fG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                       ..  -|+.|..+....                            .+|.+..++||+|+..+
T Consensus       179 -~~~~~~atVtvchs~T----------------------------~~l~~~~k~ADIvV~Av  211 (284)
T PRK14193        179 -TRRSENATVTLCHTGT----------------------------RDLAAHTRRADIIVAAA  211 (284)
T ss_pred             -hhccCCCEEEEeCCCC----------------------------CCHHHHHHhCCEEEEec
Confidence             55  789998887531                            47999999999999863

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=97.30  E-value=0.00038  Score=60.71  Aligned_cols=60  Identities=27%  Similarity=0.316  Sum_probs=46.1

Q ss_pred             EEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       170 IvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      |||+|.+|..+|+.| ...|.+|.+|||++.. .++..+        .     +.....++.+++++||+|++++
T Consensus         1 ~IGlG~mG~~mA~~L-~~~G~~V~v~dr~~~~-~~~l~~--------~-----g~~~~~s~~~~~~~advVil~v   60 (288)
T TIGR01692         1 FIGLGNMGGPMAANL-LKAGHPVRVFDLFPDA-VEEAVA--------A-----GAQAAASPAEAAEGADRVITML   60 (288)
T ss_pred             CCcccHhHHHHHHHH-HhCCCeEEEEeCCHHH-HHHHHH--------c-----CCeecCCHHHHHhcCCEEEEeC
Confidence            589999999999998 7889999999998754 222111        1     1223468999999999999975

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=97.30  E-value=0.00078  Score=59.39  Aligned_cols=75  Identities=16%  Similarity=0.227  Sum_probs=48.7

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCC--CCccccccCCHHHHhhhCCEEEEeC
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE--QPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +|+|+|.|.+|..+|..| ..-|.+|..|+|++... +..-. .+........  ...+.....++++.++.+|+|++++
T Consensus         3 kI~iiG~G~mG~~~a~~L-~~~g~~V~~~~r~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v   79 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVL-ARNGHDVTLWARDPEQA-AEINA-DRENPRYLPGIKLPDNLRATTDLAEALADADLILVAV   79 (325)
T ss_pred             EEEEECCCHHHHHHHHHH-HhCCCEEEEEECCHHHH-HHHHH-cCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeC
Confidence            699999999999999998 57799999999976431 21111 0000000000  0012223457888999999999875

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=97.30  E-value=0.00055  Score=67.30  Aligned_cols=66  Identities=23%  Similarity=0.288  Sum_probs=48.2

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCC--cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      ++|||+|+|.+|+.+++.+ +..|  .+|+++|++.... +. ...+       +..   .....++++.++++|+|+++
T Consensus         4 ~~I~IIG~G~mG~ala~~l-~~~G~~~~V~~~d~~~~~~-~~-a~~~-------g~~---~~~~~~~~~~~~~aDvVila   70 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKAL-RERGLAREVVAVDRRAKSL-EL-AVSL-------GVI---DRGEEDLAEAVSGADVIVLA   70 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHH-HhcCCCCEEEEEECChhHH-HH-HHHC-------CCC---CcccCCHHHHhcCCCEEEEC
Confidence            6899999999999999998 7877  5899999986542 11 1111       110   01235788999999999998


Q ss_pred             C
Q 026023          244 C  244 (244)
Q Consensus       244 ~  244 (244)
                      +
T Consensus        71 v   71 (735)
T PRK14806         71 V   71 (735)
T ss_pred             C
Confidence            5

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.29  E-value=0.0095  Score=51.95  Aligned_cols=145  Identities=15%  Similarity=0.198  Sum_probs=89.9

Q ss_pred             HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccH-HHHHHhhccCCcEEEEcccCCCccChHH
Q 026023           33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA  104 (244)
Q Consensus        33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~-~~l~~~p~l~~k~I~~~~aG~d~id~~~  104 (244)
                      .++.|++.+....++ ..+++++.+.+..     .+|++++..+  ..+++ .+++..+..  |=       +|.+... 
T Consensus        57 a~~~Gi~~~~~~l~~-~~~~~~l~~~I~~LN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~--KD-------VDGl~~~-  125 (288)
T PRK14171         57 AHKIGIDTLLVNLST-TIHTNDLISKINELNLDNEISGIIVQLPLPSSIDKNKILSAVSPS--KD-------IDGFHPL-  125 (288)
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cc-------cccCCcc-
Confidence            355588777665543 3577888776542     4678888743  23443 344544443  32       2222111 


Q ss_pred             HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHHH
Q 026023          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM  183 (244)
Q Consensus       105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~~  183 (244)
                        ..|-........+.+.++.-++.++=.                         .+.++.||++.|+|-+. +|+-+|.+
T Consensus       126 --N~g~l~~g~~~~~~PcTp~av~~lL~~-------------------------y~i~l~GK~vvViGrS~iVGkPla~l  178 (288)
T PRK14171        126 --NVGYLHSGISQGFIPCTALGCLAVIKK-------------------------YEPNLTGKNVVIIGRSNIVGKPLSAL  178 (288)
T ss_pred             --chhhhhcCCCCCCcCCCHHHHHHHHHH-------------------------hCCCCCCCEEEEECCCCcchHHHHHH
Confidence              111112221123566677665544311                         13469999999999987 59999999


Q ss_pred             HhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       184 la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      | ..-|+.|..+..+.                            .+|.+..++||+|+..+
T Consensus       179 L-~~~~ATVtichs~T----------------------------~~L~~~~~~ADIvV~Av  210 (288)
T PRK14171        179 L-LKENCSVTICHSKT----------------------------HNLSSITSKADIVVAAI  210 (288)
T ss_pred             H-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEcc
Confidence            9 78899998776431                            47999999999999864

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.28  E-value=0.00088  Score=55.55  Aligned_cols=72  Identities=17%  Similarity=0.243  Sum_probs=50.4

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      .++.|++|.|+|.|.+|...++.| ...|++|..+++...++..+..+.          ..+.+..-.-.++-+..+|+|
T Consensus         6 l~l~~k~vLVIGgG~va~~ka~~L-l~~ga~V~VIs~~~~~~l~~l~~~----------~~i~~~~~~~~~~~l~~adlV   74 (202)
T PRK06718          6 IDLSNKRVVIVGGGKVAGRRAITL-LKYGAHIVVISPELTENLVKLVEE----------GKIRWKQKEFEPSDIVDAFLV   74 (202)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEcCCCCHHHHHHHhC----------CCEEEEecCCChhhcCCceEE
Confidence            469999999999999999999998 789999999998765543332211          111111111224567889988


Q ss_pred             EEe
Q 026023          241 CTL  243 (244)
Q Consensus       241 vl~  243 (244)
                      +.+
T Consensus        75 iaa   77 (202)
T PRK06718         75 IAA   77 (202)
T ss_pred             EEc
Confidence            865

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.27  E-value=0.011  Score=51.47  Aligned_cols=145  Identities=17%  Similarity=0.150  Sum_probs=91.1

Q ss_pred             HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccH-HHHHHhhccCCcEEEEcccCCCccChHH
Q 026023           33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA  104 (244)
Q Consensus        33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~-~~l~~~p~l~~k~I~~~~aG~d~id~~~  104 (244)
                      .++.|++.+.+..++ ..+++++.+.+..     .++++++..+  ..+++ .+++..+..  |       =+|.+....
T Consensus        55 a~~~Gi~~~~~~l~~-~~t~~~l~~~I~~lN~d~~V~GIivqlPLp~~i~~~~i~~~I~p~--K-------DVDGl~~~n  124 (282)
T PRK14182         55 CEEVGITSVEHHLPA-TTTQAELLALIARLNADPAVHGILVQLPLPKHVDERAVLDAISPA--K-------DADGFHPFN  124 (282)
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--c-------CcCCCCHhH
Confidence            355588777666544 3477777766532     4678888743  23443 344444443  3       223332111


Q ss_pred             HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHHH
Q 026023          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM  183 (244)
Q Consensus       105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~~  183 (244)
                      .   |-...+.++.+.+.+|.-++.++=.                         .+.++.||++.|+|-+. +|+-+|.+
T Consensus       125 ~---g~l~~g~~~~~~PcTp~avi~ll~~-------------------------~~i~l~Gk~vvViGrS~iVGkPla~l  176 (282)
T PRK14182        125 V---GALSIGIAGVPRPCTPAGVMRMLDE-------------------------ARVDPKGKRALVVGRSNIVGKPMAMM  176 (282)
T ss_pred             H---HHHhCCCCCCCCCCCHHHHHHHHHH-------------------------hCCCCCCCEEEEECCCCcchHHHHHH
Confidence            1   2122222332466777666655422                         13468999999999987 69999999


Q ss_pred             HhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       184 la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      | ..-|+.|..+..+.                            .+|.+..++||+|+..+
T Consensus       177 L-~~~~AtVtichs~T----------------------------~nl~~~~~~ADIvI~Av  208 (282)
T PRK14182        177 L-LERHATVTIAHSRT----------------------------ADLAGEVGRADILVAAI  208 (282)
T ss_pred             H-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEec
Confidence            9 78899999887532                            37999999999999763

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=97.27  E-value=0.0012  Score=52.44  Aligned_cols=75  Identities=23%  Similarity=0.338  Sum_probs=48.5

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcC--CCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN--GEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +|+|+|.|+.|.++|..| ..-|-+|..|+|.... .+. .+..+.-....  ........-..++++.++.||+|++.+
T Consensus         1 KI~ViGaG~~G~AlA~~l-a~~g~~V~l~~~~~~~-~~~-i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~Iiiav   77 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALL-ADNGHEVTLWGRDEEQ-IEE-INETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAV   77 (157)
T ss_dssp             EEEEESSSHHHHHHHHHH-HHCTEEEEEETSCHHH-HHH-HHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S
T ss_pred             CEEEECcCHHHHHHHHHH-HHcCCEEEEEeccHHH-HHH-HHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecc
Confidence            589999999999999998 7899999999998633 222 21111000000  000112234578999999999999864

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=97.27  E-value=0.011  Score=53.00  Aligned_cols=145  Identities=16%  Similarity=0.173  Sum_probs=88.9

Q ss_pred             HHhCCCeEEEeccCCCCCCHHHHHHHh---cC--CccEEEeccC--ccccH-HHHHHhhccCCcEEEEcccCCCccChHH
Q 026023           33 LIEQDCRVEICTQKKTILSVEDIIALI---GD--KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA  104 (244)
Q Consensus        33 l~~~~~~v~~~~~~~~~~~~~~~~~~~---~~--~ad~ii~~~~--~~~~~-~~l~~~p~l~~k~I~~~~aG~d~id~~~  104 (244)
                      .++.|++.+.+..++ ..+++|+.+.+   .+  .+|++++..+  ..+++ .+++..+..  |       =+|.+....
T Consensus       128 ~e~~GI~~~~~~lpe-~~te~ell~~I~~LN~D~~V~GIlVQlPLP~~id~~~i~~aI~P~--K-------DVDGl~p~N  197 (364)
T PLN02616        128 CDSVGINSFEVRLPE-DSTEQEVLKFISGFNNDPSVHGILVQLPLPSHMDEQNILNAVSIE--K-------DVDGFHPLN  197 (364)
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--c-------CcccCChhh
Confidence            355577766555443 34777777665   22  4688888743  23443 345555444  3       223222111


Q ss_pred             HhhCCcEEEe-cCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHH
Q 026023          105 ANKYGIAVGN-TPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYAR  182 (244)
Q Consensus       105 ~~~~gI~v~n-~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~  182 (244)
                      .   |-...+ ....+...++.-++.++=.                         .+.++.||++.|||-++ +|+-+|.
T Consensus       198 ~---G~L~~g~~~~~f~PCTp~avielL~~-------------------------y~i~l~GK~vvVIGRS~iVGkPLa~  249 (364)
T PLN02616        198 I---GRLAMRGREPLFVPCTPKGCIELLHR-------------------------YNVEIKGKRAVVIGRSNIVGMPAAL  249 (364)
T ss_pred             h---HHHhcCCCCCCCCCCCHHHHHHHHHH-------------------------hCCCCCCCEEEEECCCccccHHHHH
Confidence            1   111111 0123466777665543321                         13469999999999987 5999999


Q ss_pred             HHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       183 ~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +| ..-|+.|..+....                            .++.+..++||+|+..+
T Consensus       250 LL-~~~~ATVTicHs~T----------------------------~nl~~~~r~ADIVIsAv  282 (364)
T PLN02616        250 LL-QREDATVSIVHSRT----------------------------KNPEEITREADIIISAV  282 (364)
T ss_pred             HH-HHCCCeEEEeCCCC----------------------------CCHHHHHhhCCEEEEcC
Confidence            99 78899999886431                            47999999999999763

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.26  E-value=0.0095  Score=52.08  Aligned_cols=144  Identities=16%  Similarity=0.168  Sum_probs=88.6

Q ss_pred             HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccH-HHHHHhhccCCcEEEEcccCCCccChHH
Q 026023           33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA  104 (244)
Q Consensus        33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~-~~l~~~p~l~~k~I~~~~aG~d~id~~~  104 (244)
                      .++.|++.+....++ ..+++++.+.+.+     .+|++++..+  ..+++ .+++..+..  |       =+|.+...-
T Consensus        56 a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--K-------DVDGl~~~N  125 (293)
T PRK14185         56 CEECGFKSSLIRYES-DVTEEELLAKVRELNQDDDVDGFIVQLPLPKHISEQKVIEAIDYR--K-------DVDGFHPIN  125 (293)
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcc--c-------CcCCCCHhh
Confidence            355687776655544 3467777754432     4678888643  23443 344444443  3       223322111


Q ss_pred             HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHHH
Q 026023          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM  183 (244)
Q Consensus       105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~~  183 (244)
                      +   |-...+. ..+.++++.-++.++=.                         .+.++.||++.|+|-+. +|+-+|.+
T Consensus       126 ~---g~l~~~~-~~~~PcTp~av~~lL~~-------------------------~~i~l~GK~vvViGrS~iVGkPla~l  176 (293)
T PRK14185        126 V---GRMSIGL-PCFVSATPNGILELLKR-------------------------YHIETSGKKCVVLGRSNIVGKPMAQL  176 (293)
T ss_pred             H---HHHhCCC-CCCCCCCHHHHHHHHHH-------------------------hCCCCCCCEEEEECCCccchHHHHHH
Confidence            1   1111122 23567777776665422                         23469999999999987 59999999


Q ss_pred             HhccC----CcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          184 MVEGF----KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       184 la~af----G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      | ..-    ++.|..+....                            .+|.+..++||+|+..+
T Consensus       177 L-~~~~~~~~aTVtvchs~T----------------------------~nl~~~~~~ADIvIsAv  212 (293)
T PRK14185        177 M-MQKAYPGDCTVTVCHSRS----------------------------KNLKKECLEADIIIAAL  212 (293)
T ss_pred             H-HcCCCCCCCEEEEecCCC----------------------------CCHHHHHhhCCEEEEcc
Confidence            8 443    79998886431                            47999999999999764

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.25  E-value=0.015  Score=50.68  Aligned_cols=144  Identities=16%  Similarity=0.226  Sum_probs=90.4

Q ss_pred             HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccH-HHHHHhhccCCcEEEEcccCCCccChHH
Q 026023           33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA  104 (244)
Q Consensus        33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~-~~l~~~p~l~~k~I~~~~aG~d~id~~~  104 (244)
                      .++.|++++.+..++ ..+++|+.+.+..     +++++++..+  ..+++ .+++..+..  |       =+|.+....
T Consensus        57 a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvq~PLp~~i~~~~i~~~I~p~--K-------DVDGl~~~n  126 (284)
T PRK14190         57 AEKVGIYSELYEFPA-DITEEELLALIDRLNADPRINGILVQLPLPKHIDEKAVIERISPE--K-------DVDGFHPIN  126 (284)
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--c-------cccccCHhh
Confidence            345588877666554 3477777766542     4578888643  23443 344444443  3       223332111


Q ss_pred             HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHHH
Q 026023          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM  183 (244)
Q Consensus       105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~~  183 (244)
                      +   |-...+.+ .+.+.++.-++.++=.                         .+.++.||++.|+|-+. +|+-+|.+
T Consensus       127 ~---g~l~~~~~-~~~PcTp~av~~lL~~-------------------------~~i~l~Gk~vvViGrS~iVG~Pla~l  177 (284)
T PRK14190        127 V---GRMMLGQD-TFLPCTPHGILELLKE-------------------------YNIDISGKHVVVVGRSNIVGKPVGQL  177 (284)
T ss_pred             H---HHHhcCCC-CCCCCCHHHHHHHHHH-------------------------cCCCCCCCEEEEECCCCccHHHHHHH
Confidence            1   11112222 3567777776665422                         23579999999999987 69999999


Q ss_pred             HhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       184 la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      | ..-|+.|..++..                            ..+|.+.+++||+|+..+
T Consensus       178 L-~~~~atVt~chs~----------------------------t~~l~~~~~~ADIvI~Av  209 (284)
T PRK14190        178 L-LNENATVTYCHSK----------------------------TKNLAELTKQADILIVAV  209 (284)
T ss_pred             H-HHCCCEEEEEeCC----------------------------chhHHHHHHhCCEEEEec
Confidence            9 7889999888642                            137999999999999753

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=97.25  E-value=0.00094  Score=57.45  Aligned_cols=58  Identities=26%  Similarity=0.382  Sum_probs=43.1

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCC----cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC  241 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG----~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv  241 (244)
                      .+|||+|+|++|+.+++.| ..-|    -++.+++|+....                    +.....+..+++.+||+|+
T Consensus         4 mkI~iIG~G~mG~ai~~~l-~~~~~~~~~~i~~~~~~~~~~--------------------~~~~~~~~~~~~~~~D~Vi   62 (260)
T PTZ00431          4 IRVGFIGLGKMGSALAYGI-ENSNIIGKENIYYHTPSKKNT--------------------PFVYLQSNEELAKTCDIIV   62 (260)
T ss_pred             CEEEEECccHHHHHHHHHH-HhCCCCCcceEEEECCChhcC--------------------CeEEeCChHHHHHhCCEEE
Confidence            4799999999999999998 4444    2488888864320                    1122357788899999999


Q ss_pred             EeC
Q 026023          242 TLC  244 (244)
Q Consensus       242 l~~  244 (244)
                      +++
T Consensus        63 lav   65 (260)
T PTZ00431         63 LAV   65 (260)
T ss_pred             EEe
Confidence            874

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=97.25  E-value=0.0008  Score=60.01  Aligned_cols=68  Identities=18%  Similarity=0.296  Sum_probs=49.4

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      ++||||+|-|..|+.++.- |+.+|.+|+..|+.+........+.       .-...  +.....+.++.+.||+|+.
T Consensus         1 ~~tvgIlGGGQLgrMm~~a-a~~lG~~v~vLdp~~~~PA~~va~~-------~i~~~--~dD~~al~ela~~~DViT~   68 (375)
T COG0026           1 MKTVGILGGGQLGRMMALA-AARLGIKVIVLDPDADAPAAQVADR-------VIVAA--YDDPEALRELAAKCDVITY   68 (375)
T ss_pred             CCeEEEEcCcHHHHHHHHH-HHhcCCEEEEecCCCCCchhhcccc-------eeecC--CCCHHHHHHHHhhCCEEEE
Confidence            4799999999999999999 6999999999999887643332110       00000  1112368999999999974

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.23  E-value=0.00077  Score=62.66  Aligned_cols=37  Identities=16%  Similarity=0.317  Sum_probs=34.5

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       163 l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      +.+++|+|+|+|..|+.+|+.| +..|++|.++|+++.
T Consensus        12 ~~~~~i~v~G~G~sG~a~a~~L-~~~G~~V~~~D~~~~   48 (458)
T PRK01710         12 IKNKKVAVVGIGVSNIPLIKFL-VKLGAKVTAFDKKSE   48 (458)
T ss_pred             hcCCeEEEEcccHHHHHHHHHH-HHCCCEEEEECCCCC
Confidence            6789999999999999999998 899999999998764

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=97.23  E-value=0.00099  Score=60.76  Aligned_cols=70  Identities=27%  Similarity=0.300  Sum_probs=55.7

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      +|.++++.|||+|.+|+-+|+.| ..-|. +|+..+|+... .++..+.+|          ..+...+++.+.+.++|+|
T Consensus       175 ~L~~~~vlvIGAGem~~lva~~L-~~~g~~~i~IaNRT~er-A~~La~~~~----------~~~~~l~el~~~l~~~DvV  242 (414)
T COG0373         175 SLKDKKVLVIGAGEMGELVAKHL-AEKGVKKITIANRTLER-AEELAKKLG----------AEAVALEELLEALAEADVV  242 (414)
T ss_pred             ccccCeEEEEcccHHHHHHHHHH-HhCCCCEEEEEcCCHHH-HHHHHHHhC----------CeeecHHHHHHhhhhCCEE
Confidence            38999999999999999999999 79996 68888888754 344444332          2345667899999999999


Q ss_pred             EEe
Q 026023          241 CTL  243 (244)
Q Consensus       241 vl~  243 (244)
                      +.+
T Consensus       243 iss  245 (414)
T COG0373         243 ISS  245 (414)
T ss_pred             EEe
Confidence            976

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.23  E-value=0.014  Score=50.93  Aligned_cols=145  Identities=16%  Similarity=0.211  Sum_probs=89.4

Q ss_pred             HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccH-HHHHHhhccCCcEEEEcccCCCccChHH
Q 026023           33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA  104 (244)
Q Consensus        33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~-~~l~~~p~l~~k~I~~~~aG~d~id~~~  104 (244)
                      .++.|++.+.+..++ ..+++++.+.+.+     .++++++..+  ..+++ .+++..+..  |=       +|.+....
T Consensus        51 ~~~~Gi~~~~~~l~~-~~t~~el~~~I~~lN~d~~V~GIlvqlPlP~~i~~~~i~~~I~p~--KD-------VDGl~p~n  120 (287)
T PRK14181         51 ATDLGMVSKAHRLPS-DATLSDILKLIHRLNNDPNIHGILVQLPLPKHLDAQAILQAISPD--KD-------VDGLHPVN  120 (287)
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCcCHHHHHhccCcc--cC-------cccCChhh
Confidence            345577776665544 3477777766532     5688988753  23444 345555444  32       22222111


Q ss_pred             HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHHH
Q 026023          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM  183 (244)
Q Consensus       105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~~  183 (244)
                      .   |-...+....+.+.++.-++.++=.                         .+.++.||++.|+|-+. +|+-+|.+
T Consensus       121 ~---g~l~~g~~~~~~PcTp~avi~lL~~-------------------------~~i~l~Gk~vvViGrS~iVGkPla~l  172 (287)
T PRK14181        121 M---GKLLLGETDGFIPCTPAGIIELLKY-------------------------YEIPLHGRHVAIVGRSNIVGKPLAAL  172 (287)
T ss_pred             H---HHHhcCCCCCCCCCCHHHHHHHHHH-------------------------hCCCCCCCEEEEECCCccchHHHHHH
Confidence            1   1111111123567777766655421                         13469999999999987 59999999


Q ss_pred             HhccC----CcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          184 MVEGF----KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       184 la~af----G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      | ..-    |+.|..+....                            .+|++.+++||+|+..+
T Consensus       173 L-~~~~~~~~AtVtvchs~T----------------------------~~l~~~~~~ADIvV~Av  208 (287)
T PRK14181        173 L-MQKHPDTNATVTLLHSQS----------------------------ENLTEILKTADIIIAAI  208 (287)
T ss_pred             H-HhCcCCCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEcc
Confidence            9 555    78998876431                            37999999999999764

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=97.22  E-value=0.00073  Score=58.68  Aligned_cols=68  Identities=26%  Similarity=0.327  Sum_probs=53.8

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC  241 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv  241 (244)
                      +...+++|+||+|.-|..+++-| -.-|.+|++|||+.+.. .+|.+ -            +..-..+..|+.+.||+|+
T Consensus        32 ~~s~~~iGFIGLG~MG~~M~~nL-ik~G~kVtV~dr~~~k~-~~f~~-~------------Ga~v~~sPaeVae~sDvvi   96 (327)
T KOG0409|consen   32 TPSKTRIGFIGLGNMGSAMVSNL-IKAGYKVTVYDRTKDKC-KEFQE-A------------GARVANSPAEVAEDSDVVI   96 (327)
T ss_pred             CcccceeeEEeeccchHHHHHHH-HHcCCEEEEEeCcHHHH-HHHHH-h------------chhhhCCHHHHHhhcCEEE
Confidence            34678999999999999999998 89999999999998763 22221 1            1223468999999999999


Q ss_pred             EeC
Q 026023          242 TLC  244 (244)
Q Consensus       242 l~~  244 (244)
                      .++
T Consensus        97 tmv   99 (327)
T KOG0409|consen   97 TMV   99 (327)
T ss_pred             EEc
Confidence            764

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.21  E-value=0.013  Score=51.26  Aligned_cols=145  Identities=16%  Similarity=0.193  Sum_probs=89.7

Q ss_pred             HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccH-HHHHHhhccCCcEEEEcccCCCccChHH
Q 026023           33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA  104 (244)
Q Consensus        33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~-~~l~~~p~l~~k~I~~~~aG~d~id~~~  104 (244)
                      .++.|++.+.+..++ ..+++++.+.+..     .++++++..+  ..+++ .+++..+..  |=       +|.+....
T Consensus        57 a~~~Gi~~~~~~l~~-~~~e~~l~~~I~~lN~d~~V~GIlvqlPLP~~i~~~~i~~~I~p~--KD-------VDGl~~~n  126 (294)
T PRK14187         57 AEMLGLRSETILLPS-TISESSLIEKINELNNDDSVHGILVQLPVPNHIDKNLIINTIDPE--KD-------VDGFHNEN  126 (294)
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cC-------cccCChhh
Confidence            345588777665544 2467777655432     4578888643  23443 345555444  32       22222111


Q ss_pred             HhhCCcEEEecC-CCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHH
Q 026023          105 ANKYGIAVGNTP-GVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYAR  182 (244)
Q Consensus       105 ~~~~gI~v~n~~-~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~  182 (244)
                      .   |-...+.. ..+.++++.-++.++=.                         .+.++.||++.|+|-+. +|+-+|.
T Consensus       127 ~---g~l~~g~~~~~~~PcTp~avi~lL~~-------------------------~~i~l~Gk~vvViGrS~iVGkPla~  178 (294)
T PRK14187        127 V---GRLFTGQKKNCLIPCTPKGCLYLIKT-------------------------ITRNLSGSDAVVIGRSNIVGKPMAC  178 (294)
T ss_pred             H---HHHhCCCCCCCccCcCHHHHHHHHHH-------------------------hCCCCCCCEEEEECCCccchHHHHH
Confidence            1   11111111 23466677766544321                         23569999999999987 6999999


Q ss_pred             HHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       183 ~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +| ..-|+.|..+....                            .+|.+..++||+|+..+
T Consensus       179 lL-~~~~aTVt~chs~T----------------------------~~l~~~~~~ADIvVsAv  211 (294)
T PRK14187        179 LL-LGENCTVTTVHSAT----------------------------RDLADYCSKADILVAAV  211 (294)
T ss_pred             HH-hhCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEcc
Confidence            99 88999999887532                            47999999999999864

>PLN02858 fructose-bisphosphate aldolase

Probab=97.21  E-value=0.00093  Score=69.71  Aligned_cols=66  Identities=17%  Similarity=0.249  Sum_probs=52.1

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      .+.+||+||+|.+|..+|+.| ..-|.+|.+|||++... +++.+             .+....++..|+.++||+|+++
T Consensus         3 ~~~~IGfIGLG~MG~~mA~~L-~~~G~~v~v~dr~~~~~-~~l~~-------------~Ga~~~~s~~e~a~~advVi~~   67 (1378)
T PLN02858          3 SAGVVGFVGLDSLSFELASSL-LRSGFKVQAFEISTPLM-EKFCE-------------LGGHRCDSPAEAAKDAAALVVV   67 (1378)
T ss_pred             CCCeEEEEchhHHHHHHHHHH-HHCCCeEEEEcCCHHHH-HHHHH-------------cCCeecCCHHHHHhcCCEEEEE
Confidence            456899999999999999999 67899999999987542 33221             1233457999999999999987


Q ss_pred             C
Q 026023          244 C  244 (244)
Q Consensus       244 ~  244 (244)
                      +
T Consensus        68 l   68 (1378)
T PLN02858         68 L   68 (1378)
T ss_pred             c
Confidence            4

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=97.21  E-value=0.0078  Score=53.61  Aligned_cols=145  Identities=14%  Similarity=0.216  Sum_probs=91.0

Q ss_pred             HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccHH-HHHHhhccCCcEEEEcccCCCccChHH
Q 026023           33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVNA  104 (244)
Q Consensus        33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~~-~l~~~p~l~~k~I~~~~aG~d~id~~~  104 (244)
                      .++.|++.+....++ ..+++|+.+.+..     .+|+|++..+  ..+++. +++..+..  |       =+|.+....
T Consensus       111 a~~~GI~~~~~~l~~-~~te~ell~~I~~lN~D~~V~GIlVQlPLP~hid~~~i~~~I~p~--K-------DVDGl~p~N  180 (345)
T PLN02897        111 CEETGIKSLLAELPE-DCTEGQILSALRKFNEDTSIHGILVQLPLPQHLDESKILNMVRLE--K-------DVDGFHPLN  180 (345)
T ss_pred             HHhcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--c-------CccCCCHHH
Confidence            345577777665544 3477777776542     4678888643  234443 44444333  3       223322111


Q ss_pred             HhhCCcEEEe-cCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHH
Q 026023          105 ANKYGIAVGN-TPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYAR  182 (244)
Q Consensus       105 ~~~~gI~v~n-~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~  182 (244)
                      .   |-.... ....+...++.-++.++-.                         .+.++.||++.|+|-++ +|+-+|.
T Consensus       181 ~---G~L~~~~~~~~~~PCTp~avi~LL~~-------------------------~~i~l~GK~vvVIGRS~iVGkPla~  232 (345)
T PLN02897        181 V---GNLAMRGREPLFVSCTPKGCVELLIR-------------------------SGVEIAGKNAVVIGRSNIVGLPMSL  232 (345)
T ss_pred             H---HHHhcCCCCCCCcCCCHHHHHHHHHH-------------------------hCCCCCCCEEEEECCCccccHHHHH
Confidence            1   111111 1123567777777766522                         23569999999999987 5999999


Q ss_pred             HHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       183 ~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +| ..-|+.|..+....                            .++.+..++||+|+..+
T Consensus       233 LL-~~~~ATVTicHs~T----------------------------~nl~~~~~~ADIvIsAv  265 (345)
T PLN02897        233 LL-QRHDATVSTVHAFT----------------------------KDPEQITRKADIVIAAA  265 (345)
T ss_pred             HH-HHCCCEEEEEcCCC----------------------------CCHHHHHhhCCEEEEcc
Confidence            99 78899998886431                            37899999999999763

>PRK07340 ornithine cyclodeaminase; Validated

Probab=97.21  E-value=0.0016  Score=57.44  Aligned_cols=71  Identities=15%  Similarity=0.118  Sum_probs=52.1

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      ..++++|+|.|.+|+..++.++..++. +|..|+|++.. .+.+.+.+.+       ...... ..+.++++++||+|+.
T Consensus       124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~-a~~~a~~~~~-------~~~~~~-~~~~~~av~~aDiVit  194 (304)
T PRK07340        124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAAS-AAAFCAHARA-------LGPTAE-PLDGEAIPEAVDLVVT  194 (304)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHH-HHHHHHHHHh-------cCCeeE-ECCHHHHhhcCCEEEE
Confidence            567999999999999999997445775 69999998754 3455444321       112222 4689999999999997


Q ss_pred             e
Q 026023          243 L  243 (244)
Q Consensus       243 ~  243 (244)
                      +
T Consensus       195 a  195 (304)
T PRK07340        195 A  195 (304)
T ss_pred             c
Confidence            6

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=97.18  E-value=0.0012  Score=50.34  Aligned_cols=70  Identities=31%  Similarity=0.504  Sum_probs=43.5

Q ss_pred             EEEEEcC-ChHHHHHHHHHhccCCcE-EEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          167 TVGVIGA-GRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       167 tvgIvG~-G~IG~~vA~~la~afG~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      +|+|+|+ |+.|+.+++.+...=|++ +-++++.+++....   ..|..   .+....+..-.+++++++.++|+|+-
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~---d~g~~---~~~~~~~~~v~~~l~~~~~~~DVvID   73 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGK---DVGEL---AGIGPLGVPVTDDLEELLEEADVVID   73 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTS---BCHHH---CTSST-SSBEBS-HHHHTTH-SEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccc---hhhhh---hCcCCcccccchhHHHhcccCCEEEE
Confidence            6999999 999999999984448888 44556655221111   11111   12223444456899999999999873

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=97.18  E-value=0.0021  Score=48.03  Aligned_cols=64  Identities=27%  Similarity=0.402  Sum_probs=44.8

Q ss_pred             EEEEEcCChHHHHHHHHHhccC--CcEEE-EEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--hCCEEE
Q 026023          167 TVGVIGAGRIGSAYARMMVEGF--KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVVC  241 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~af--G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sD~Vv  241 (244)
                      ++||||+|.+|+...+-+ ...  +.++. .+|+++.. .+.+.+.+            +...+.+++++++  +.|+|+
T Consensus         2 ~v~iiG~G~~g~~~~~~~-~~~~~~~~v~~v~d~~~~~-~~~~~~~~------------~~~~~~~~~~ll~~~~~D~V~   67 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRAL-LRSSPDFEVVAVCDPDPER-AEAFAEKY------------GIPVYTDLEELLADEDVDAVI   67 (120)
T ss_dssp             EEEEESTSHHHHHHHHHH-HHTTTTEEEEEEECSSHHH-HHHHHHHT------------TSEEESSHHHHHHHTTESEEE
T ss_pred             EEEEECCcHHHHHHHHHH-HhcCCCcEEEEEEeCCHHH-HHHHHHHh------------cccchhHHHHHHHhhcCCEEE
Confidence            699999999999998776 444  66765 56766543 33333322            1225679999999  789998


Q ss_pred             EeC
Q 026023          242 TLC  244 (244)
Q Consensus       242 l~~  244 (244)
                      ++.
T Consensus        68 I~t   70 (120)
T PF01408_consen   68 IAT   70 (120)
T ss_dssp             EES
T ss_pred             Eec
Confidence            863

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=97.17  E-value=0.0016  Score=58.04  Aligned_cols=77  Identities=19%  Similarity=0.240  Sum_probs=44.3

Q ss_pred             EEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhh--hhhhcCC----CCCccccccCCHHHHhhhCCEEE
Q 026023          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG--QFLKANG----EQPVTWKRASSMDEVLREADVVC  241 (244)
Q Consensus       168 vgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~l~ell~~sD~Vv  241 (244)
                      |||+|||+||+.+++.+...=+++|.++.....+..+.....+|  .......    ...-+..-..++++++..+|+|+
T Consensus         1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv   80 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV   80 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence            69999999999999986334578988887632221111111111  1000000    00001112347999999999999


Q ss_pred             EeC
Q 026023          242 TLC  244 (244)
Q Consensus       242 l~~  244 (244)
                      .|.
T Consensus        81 e~T   83 (333)
T TIGR01546        81 DAT   83 (333)
T ss_pred             ECC
Confidence            874

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=97.17  E-value=0.0011  Score=62.21  Aligned_cols=76  Identities=18%  Similarity=0.223  Sum_probs=49.9

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHh-------hhhhhhhcCCCCCc-cccccCCHHHHhhhC
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT-------AYGQFLKANGEQPV-TWKRASSMDEVLREA  237 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~l~ell~~s  237 (244)
                      ++|||||.|.+|..+|..| ..-|.+|..||+++... +...+       .++.+ ........ .....+++.+.+++|
T Consensus         5 ~kIavIG~G~MG~~iA~~l-a~~G~~V~v~D~~~~~~-~~~~~~~~~~~~~~~~l-~~~~~~~~g~i~~~~~~~ea~~~a   81 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARF-LLAGIDVAVFDPHPEAE-RIIGEVLANAERAYAML-TDAPLPPEGRLTFCASLAEAVAGA   81 (495)
T ss_pred             CEEEEECcCHHHHHHHHHH-HhCCCeEEEEeCCHHHH-HHHHHHHHHHHHHHhhh-ccchhhhhhceEeeCCHHHHhcCC
Confidence            4799999999999999998 56799999999987552 11110       00000 00000000 123456899999999


Q ss_pred             CEEEEeC
Q 026023          238 DVVCTLC  244 (244)
Q Consensus       238 D~Vvl~~  244 (244)
                      |+|+.++
T Consensus        82 D~Vieav   88 (495)
T PRK07531         82 DWIQESV   88 (495)
T ss_pred             CEEEEcC
Confidence            9999764

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.17  E-value=0.0016  Score=57.97  Aligned_cols=73  Identities=18%  Similarity=0.219  Sum_probs=51.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      ..++++|+|.|.+|+..++.++...+. +|..++|++.. .+++.+.+..    .  ....+..+.++++++++||+|+.
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~-a~~~~~~~~~----~--~~~~~~~~~~~~~~~~~aDiVi~  198 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEK-AYAFAQEIQS----K--FNTEIYVVNSADEAIEEADIIVT  198 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHH-HHHHHHHHHH----h--cCCcEEEeCCHHHHHhcCCEEEE
Confidence            456899999999999998776456677 69999998754 3444332210    0  11223346789999999999997


Q ss_pred             e
Q 026023          243 L  243 (244)
Q Consensus       243 ~  243 (244)
                      +
T Consensus       199 a  199 (325)
T PRK08618        199 V  199 (325)
T ss_pred             c
Confidence            5

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.17  E-value=0.001  Score=61.15  Aligned_cols=72  Identities=17%  Similarity=0.317  Sum_probs=54.4

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      .+.|+++.|+|.|.+|+.+++.| ...|+ ++..++|+... .+.+.+.|+.         ..+..++++.+.+.++|+|
T Consensus       178 ~l~~kkvlviGaG~~a~~va~~L-~~~g~~~I~V~nRt~~r-a~~La~~~~~---------~~~~~~~~l~~~l~~aDiV  246 (414)
T PRK13940        178 NISSKNVLIIGAGQTGELLFRHV-TALAPKQIMLANRTIEK-AQKITSAFRN---------ASAHYLSELPQLIKKADII  246 (414)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHH-HHcCCCEEEEECCCHHH-HHHHHHHhcC---------CeEecHHHHHHHhccCCEE
Confidence            47889999999999999999998 78996 79999998643 3443333310         1233456788999999999


Q ss_pred             EEeC
Q 026023          241 CTLC  244 (244)
Q Consensus       241 vl~~  244 (244)
                      +.+.
T Consensus       247 I~aT  250 (414)
T PRK13940        247 IAAV  250 (414)
T ss_pred             EECc
Confidence            9863

>PRK06141 ornithine cyclodeaminase; Validated

Probab=97.16  E-value=0.0018  Score=57.37  Aligned_cols=72  Identities=15%  Similarity=0.206  Sum_probs=50.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCC-cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      ..++++|+|.|..|+..++.+...++ -+|..|+|++.. .+++.+.+.+    .   ...+....++++.+++||+|+.
T Consensus       124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~-a~~~a~~~~~----~---g~~~~~~~~~~~av~~aDIVi~  195 (314)
T PRK06141        124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAK-AEALAAELRA----Q---GFDAEVVTDLEAAVRQADIISC  195 (314)
T ss_pred             CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHH-HHHHHHHHHh----c---CCceEEeCCHHHHHhcCCEEEE
Confidence            46799999999999999985534466 479999998754 3444443311    1   1123345789999999999965


Q ss_pred             e
Q 026023          243 L  243 (244)
Q Consensus       243 ~  243 (244)
                      +
T Consensus       196 a  196 (314)
T PRK06141        196 A  196 (314)
T ss_pred             e
Confidence            3

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.16  E-value=0.012  Score=51.52  Aligned_cols=144  Identities=17%  Similarity=0.182  Sum_probs=86.6

Q ss_pred             HhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccHH-HHHHhhccCCcEEEEcccCCCccChHHH
Q 026023           34 IEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVNAA  105 (244)
Q Consensus        34 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~~-~l~~~p~l~~k~I~~~~aG~d~id~~~~  105 (244)
                      ++.|++.+.+..++ ..+++++.+.+..     ..|++++..+  ..+++. +++..+..  |       =+|.+.....
T Consensus        59 ~~~Gi~~~~~~l~~-~~t~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~--K-------DVDGl~~~n~  128 (297)
T PRK14168         59 HRLGFHEIQDNQSV-DITEEELLALIDKYNNDDSIHGILVQLPLPKHINEKKVLNAIDPD--K-------DVDGFHPVNV  128 (297)
T ss_pred             HHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--c-------cccccChhhH
Confidence            44577776655443 3477777765543     4678888643  234433 44444433  3       2222211111


Q ss_pred             hhCCcEEEec-CCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHHH
Q 026023          106 NKYGIAVGNT-PGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM  183 (244)
Q Consensus       106 ~~~gI~v~n~-~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~~  183 (244)
                         |-...+. ...+.+.++.-++.++-.                         .+.++.||++.|+|-+. +|+-+|.+
T Consensus       129 ---g~l~~~~~~~~~~PcTp~avi~lL~~-------------------------~~i~l~Gk~vvViGrS~iVGkPla~l  180 (297)
T PRK14168        129 ---GRLMIGGDEVKFLPCTPAGIQEMLVR-------------------------SGVETSGAEVVVVGRSNIVGKPIANM  180 (297)
T ss_pred             ---HHHhcCCCCCCCcCCCHHHHHHHHHH-------------------------hCCCCCCCEEEEECCCCcccHHHHHH
Confidence               1111111 123466677666655432                         23579999999999987 69999999


Q ss_pred             HhccC----CcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          184 MVEGF----KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       184 la~af----G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      | ..-    |+.|..+...                            ..++.+..++||+|+..+
T Consensus       181 L-~~~~~~~~atVtv~hs~----------------------------T~~l~~~~~~ADIvVsAv  216 (297)
T PRK14168        181 M-TQKGPGANATVTIVHTR----------------------------SKNLARHCQRADILIVAA  216 (297)
T ss_pred             H-HhcccCCCCEEEEecCC----------------------------CcCHHHHHhhCCEEEEec
Confidence            8 554    7899877543                            137999999999999763

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.14  E-value=0.015  Score=50.72  Aligned_cols=144  Identities=17%  Similarity=0.164  Sum_probs=88.2

Q ss_pred             HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccHH-HHHHhhccCCcEEEEcccCCCccChHH
Q 026023           33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVNA  104 (244)
Q Consensus        33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~~-~l~~~p~l~~k~I~~~~aG~d~id~~~  104 (244)
                      .++.|++.+....++ ..+++++.+.+..     .+|++++..+  ..+++. +++..+..  |       =+|.+....
T Consensus        56 ~~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~d~~V~GIlvqlPLP~~id~~~i~~~I~p~--K-------DVDGl~~~N  125 (286)
T PRK14184         56 CEDAGIVSEAFRLPA-DTTQEELEDLIAELNARPDIDGILLQLPLPKGLDSQRCLELIDPA--K-------DVDGFHPEN  125 (286)
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCcCceEEEecCCCCCCCHHHHHhccCcc--c-------CcccCCHhh
Confidence            355687777665543 3577877766542     4578888643  234433 34444333  3       223222111


Q ss_pred             HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHHH
Q 026023          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM  183 (244)
Q Consensus       105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~~  183 (244)
                      .   |-...+. ..+.+.++.-++.++=.                         .+.++.||++.|+|-+. +|+-+|.+
T Consensus       126 ~---g~l~~~~-~~~~PcTp~av~~lL~~-------------------------~~i~l~Gk~vvViGrS~iVG~Pla~l  176 (286)
T PRK14184        126 M---GRLALGL-PGFRPCTPAGVMTLLER-------------------------YGLSPAGKKAVVVGRSNIVGKPLALM  176 (286)
T ss_pred             H---HHHhCCC-CCCCCCCHHHHHHHHHH-------------------------hCCCCCCCEEEEECCCccchHHHHHH
Confidence            1   1111122 23466777755543321                         23569999999999987 59999999


Q ss_pred             Hhcc----CCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          184 MVEG----FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       184 la~a----fG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      | ..    -|++|..+..+.                            .+|.+.+++||+|+..+
T Consensus       177 L-~~~~~~~~AtVt~~hs~t----------------------------~~l~~~~~~ADIVI~Av  212 (286)
T PRK14184        177 L-GAPGKFANATVTVCHSRT----------------------------PDLAEECREADFLFVAI  212 (286)
T ss_pred             H-hCCcccCCCEEEEEeCCc----------------------------hhHHHHHHhCCEEEEec
Confidence            9 66    689988877431                            37999999999999764

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.13  E-value=0.017  Score=50.20  Aligned_cols=145  Identities=16%  Similarity=0.172  Sum_probs=89.9

Q ss_pred             HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccH-HHHHHhhccCCcEEEEcccCCCccChHH
Q 026023           33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA  104 (244)
Q Consensus        33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~-~~l~~~p~l~~k~I~~~~aG~d~id~~~  104 (244)
                      .++.|++.+.+..++ ..+++++.+.+..     .++++++..+  ..+++ ++++..+..  |=       +|.+....
T Consensus        55 a~~~Gi~~~~~~l~~-~~t~~~l~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~--KD-------VDGl~~~N  124 (282)
T PRK14166         55 CEECGIKSLVYHLNE-NTTQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISS--KD-------VDGFHPIN  124 (282)
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cC-------cccCChhh
Confidence            345577776665543 3577778776542     4678888643  23443 344444443  32       22221111


Q ss_pred             HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHHH
Q 026023          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM  183 (244)
Q Consensus       105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~~  183 (244)
                      .   |-...+....+.++++.-++.++=.                         .+.++.||++.|+|-+. +|+-+|.+
T Consensus       125 ~---g~l~~g~~~~~~PcTp~avi~lL~~-------------------------y~i~l~Gk~vvVvGrS~iVGkPla~l  176 (282)
T PRK14166        125 V---GYLNLGLESGFLPCTPLGVMKLLKA-------------------------YEIDLEGKDAVIIGASNIVGRPMATM  176 (282)
T ss_pred             h---HHHhcCCCCCCcCCCHHHHHHHHHH-------------------------hCCCCCCCEEEEECCCCcchHHHHHH
Confidence            1   1011110123567777766654422                         23469999999999987 59999999


Q ss_pred             HhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       184 la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      | ..-|+.|..+..+.                            .+|.+..++||+|+..+
T Consensus       177 L-~~~~atVt~chs~T----------------------------~nl~~~~~~ADIvIsAv  208 (282)
T PRK14166        177 L-LNAGATVSVCHIKT----------------------------KDLSLYTRQADLIIVAA  208 (282)
T ss_pred             H-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEcC
Confidence            9 78899999877532                            47999999999999864

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.13  E-value=0.0018  Score=53.79  Aligned_cols=72  Identities=22%  Similarity=0.270  Sum_probs=51.2

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      .++.|++|.|+|.|.+|.+-++.| ..+|++|..+++...++..+..+.        +  .+.+..-.--.+.+..+|+|
T Consensus         5 l~l~gk~vlVvGgG~va~rk~~~L-l~~ga~VtVvsp~~~~~l~~l~~~--------~--~i~~~~~~~~~~dl~~~~lV   73 (205)
T TIGR01470         5 ANLEGRAVLVVGGGDVALRKARLL-LKAGAQLRVIAEELESELTLLAEQ--------G--GITWLARCFDADILEGAFLV   73 (205)
T ss_pred             EEcCCCeEEEECcCHHHHHHHHHH-HHCCCEEEEEcCCCCHHHHHHHHc--------C--CEEEEeCCCCHHHhCCcEEE
Confidence            468999999999999999999998 799999999999877654443211        1  11121111124567889998


Q ss_pred             EEe
Q 026023          241 CTL  243 (244)
Q Consensus       241 vl~  243 (244)
                      +.+
T Consensus        74 i~a   76 (205)
T TIGR01470        74 IAA   76 (205)
T ss_pred             EEC
Confidence            875

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=97.13  E-value=0.034  Score=48.13  Aligned_cols=143  Identities=20%  Similarity=0.282  Sum_probs=89.9

Q ss_pred             HhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccH-HHHHHhhccCCcEEEEcccCCCccChHHH
Q 026023           34 IEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNAA  105 (244)
Q Consensus        34 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~-~~l~~~p~l~~k~I~~~~aG~d~id~~~~  105 (244)
                      ++.|+....+..++ ..+++|+.+.+.+     .+++|++..+  ..+++ .+++....-  |       -+|.+-..  
T Consensus        56 ~~iGi~~~~~~l~~-~~t~~eLl~~I~~lN~D~~v~GIlVQlPLp~hld~~~il~~I~p~--K-------DVDG~hp~--  123 (283)
T COG0190          56 EEIGIASELYDLPE-DITEEELLALIDELNADPEVDGILVQLPLPKHLDEQKLLQAIDPE--K-------DVDGFHPY--  123 (283)
T ss_pred             HHcCCeeEEEeCCC-cCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhhcCcC--C-------CccccChh--
Confidence            44576666555543 3577887776543     5678888643  23442 333433322  2       23333221  


Q ss_pred             hhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCChH-HHHHHHHH
Q 026023          106 NKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI-GSAYARMM  184 (244)
Q Consensus       106 ~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~I-G~~vA~~l  184 (244)
                       .-|-...+ ....-..++.-++.++ .   .                     .+.+++|+++.|||-++| |+-+|.+|
T Consensus       124 -N~g~L~~~-~~~~~PCTp~gi~~ll-~---~---------------------~~i~l~Gk~~vVVGrS~iVGkPla~lL  176 (283)
T COG0190         124 -NLGKLAQG-EPGFLPCTPAGIMTLL-E---E---------------------YGIDLRGKNVVVVGRSNIVGKPLALLL  176 (283)
T ss_pred             -HhcchhcC-CCCCCCCCHHHHHHHH-H---H---------------------hCCCCCCCEEEEECCCCcCcHHHHHHH
Confidence             11333333 4444556665544432 2   1                     235799999999999996 88999999


Q ss_pred             hccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          185 VEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       185 a~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                       ..-+++|..+..+.                            .++.+..++||+|+..+
T Consensus       177 -~~~naTVtvcHs~T----------------------------~~l~~~~k~ADIvv~Av  207 (283)
T COG0190         177 -LNANATVTVCHSRT----------------------------KDLASITKNADIVVVAV  207 (283)
T ss_pred             -HhCCCEEEEEcCCC----------------------------CCHHHHhhhCCEEEEec
Confidence             78999999988653                            47999999999999864

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.12  E-value=0.02  Score=49.83  Aligned_cols=145  Identities=12%  Similarity=0.182  Sum_probs=89.3

Q ss_pred             HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccH-HHHHHhhccCCcEEEEcccCCCccChHH
Q 026023           33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA  104 (244)
Q Consensus        33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~-~~l~~~p~l~~k~I~~~~aG~d~id~~~  104 (244)
                      .++.|++++.+..++ ..+++++.+.+..     ..+++++..+  ..+++ ++++..+..  |=       +|.+....
T Consensus        56 ~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIivq~PlP~~i~~~~i~~~I~p~--KD-------VDGl~~~n  125 (282)
T PRK14180         56 CAQVGIDSQVITLPE-HTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPE--KD-------VDGFHPTN  125 (282)
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhhcCcc--cc-------ccccChhh
Confidence            345588877665543 2466777665432     4578888643  23443 344444443  32       22221111


Q ss_pred             HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHHH
Q 026023          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM  183 (244)
Q Consensus       105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~~  183 (244)
                      .   |-...+....+.+++++-++.++=.                         .+.++.||++.|+|-+. +|+-+|.+
T Consensus       126 ~---g~l~~g~~~~~~PcTp~aii~lL~~-------------------------y~i~l~Gk~vvViGrS~~VGkPla~l  177 (282)
T PRK14180        126 V---GRLQLRDKKCLESCTPKGIMTMLRE-------------------------YGIKTEGAYAVVVGASNVVGKPVSQL  177 (282)
T ss_pred             H---HHHhcCCCCCcCCCCHHHHHHHHHH-------------------------hCCCCCCCEEEEECCCCcchHHHHHH
Confidence            1   1111111123466677766654422                         23469999999999987 69999999


Q ss_pred             HhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       184 la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      | ..-|+.|..+....                            .+|.+..++||+|+..+
T Consensus       178 L-~~~~ATVt~chs~T----------------------------~dl~~~~k~ADIvIsAv  209 (282)
T PRK14180        178 L-LNAKATVTTCHRFT----------------------------TDLKSHTTKADILIVAV  209 (282)
T ss_pred             H-HHCCCEEEEEcCCC----------------------------CCHHHHhhhcCEEEEcc
Confidence            9 78899999887532                            47999999999999864

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.11  E-value=0.0017  Score=56.46  Aligned_cols=72  Identities=18%  Similarity=0.265  Sum_probs=50.9

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCC-cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      ++.++++.|+|.|.+|+.+++.| ..+| .+|..++|+... .++..+.++.    ..  ...+  ..++.+.+.++|+|
T Consensus       120 ~~~~k~vlVlGaGg~a~ai~~aL-~~~g~~~V~v~~R~~~~-a~~l~~~~~~----~~--~~~~--~~~~~~~~~~~Div  189 (278)
T PRK00258        120 DLKGKRILILGAGGAARAVILPL-LDLGVAEITIVNRTVER-AEELAKLFGA----LG--KAEL--DLELQEELADFDLI  189 (278)
T ss_pred             CCCCCEEEEEcCcHHHHHHHHHH-HHcCCCEEEEEeCCHHH-HHHHHHHhhh----cc--ceee--cccchhccccCCEE
Confidence            47889999999999999999998 7999 689999998754 2333332210    00  0111  12456788999999


Q ss_pred             EEe
Q 026023          241 CTL  243 (244)
Q Consensus       241 vl~  243 (244)
                      +.+
T Consensus       190 Ina  192 (278)
T PRK00258        190 INA  192 (278)
T ss_pred             EEC
Confidence            875

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=97.10  E-value=0.0012  Score=60.55  Aligned_cols=75  Identities=19%  Similarity=0.328  Sum_probs=48.7

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhh--------hhhhhcCCCCCccccccCCHHHHhhhCC
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY--------GQFLKANGEQPVTWKRASSMDEVLREAD  238 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (244)
                      +|||+|+|.+|..+|..| ..-|.+|++||+++... +..-...        .....+. ...-......++.+.+++||
T Consensus         2 kI~vIGlG~~G~~lA~~L-a~~G~~V~~~d~~~~~v-~~l~~g~~~~~e~~l~~~~~~~-~~~g~l~~~~~~~~~~~~ad   78 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALL-ADLGHEVTGVDIDQEKV-DKLNKGKSPIYEPGLDELLAKA-LAAGRLRATTDYEDAIRDAD   78 (411)
T ss_pred             EEEEECCCchhHHHHHHH-HhcCCeEEEEECCHHHH-HHhhcCCCCCCCCCHHHHHHHh-hhcCCeEEECCHHHHHhhCC
Confidence            699999999999999998 57899999999987542 1110000        0000000 00000223457889999999


Q ss_pred             EEEEeC
Q 026023          239 VVCTLC  244 (244)
Q Consensus       239 ~Vvl~~  244 (244)
                      +|++++
T Consensus        79 vvii~v   84 (411)
T TIGR03026        79 VIIICV   84 (411)
T ss_pred             EEEEEe
Confidence            999874

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=97.10  E-value=0.0018  Score=56.70  Aligned_cols=80  Identities=15%  Similarity=0.182  Sum_probs=49.4

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhccCCcE-EEEEcCCcc--hHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (244)
Q Consensus       163 l~g~tvgIvG~G~IG~~vA~~la~afG~~-V~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~  239 (244)
                      +.|+++.|+|.|.+|++++..| ...|++ |..++|+..  +..++..+.+..................++++.++.+|+
T Consensus       124 ~~~k~vlI~GAGGagrAia~~L-a~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~Di  202 (289)
T PRK12548        124 VKGKKLTVIGAGGAATAIQVQC-ALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDI  202 (289)
T ss_pred             cCCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCE
Confidence            6789999999999999999998 689996 999999862  222332222110000000001111112245567778999


Q ss_pred             EEEe
Q 026023          240 VCTL  243 (244)
Q Consensus       240 Vvl~  243 (244)
                      ||.+
T Consensus       203 lINa  206 (289)
T PRK12548        203 LVNA  206 (289)
T ss_pred             EEEe
Confidence            9875

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=97.08  E-value=0.0013  Score=61.37  Aligned_cols=69  Identities=20%  Similarity=0.299  Sum_probs=48.8

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh---hCCEEEEe
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR---EADVVCTL  243 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---~sD~Vvl~  243 (244)
                      +|||||+|..|..+|+.| ..-|.+|.+|||++... +++.+.       ............+++|+++   ++|+|+++
T Consensus         3 ~IgvIGLG~MG~~lA~nL-~~~G~~V~v~dr~~~~~-~~l~~~-------~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~   73 (470)
T PTZ00142          3 DIGLIGLAVMGQNLALNI-ASRGFKISVYNRTYEKT-EEFVKK-------AKEGNTRVKGYHTLEELVNSLKKPRKVILL   73 (470)
T ss_pred             EEEEEeEhHHHHHHHHHH-HHCCCeEEEEeCCHHHH-HHHHHh-------hhhcCCcceecCCHHHHHhcCCCCCEEEEE
Confidence            799999999999999999 78899999999987652 222110       0000111223568999987   48988876


Q ss_pred             C
Q 026023          244 C  244 (244)
Q Consensus       244 ~  244 (244)
                      +
T Consensus        74 v   74 (470)
T PTZ00142         74 I   74 (470)
T ss_pred             e
Confidence            3

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.08  E-value=0.0012  Score=57.32  Aligned_cols=35  Identities=31%  Similarity=0.554  Sum_probs=31.6

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ++|+|||.|.+|..+|..+ ...|.+|..+|+++..
T Consensus         4 ~kI~VIG~G~mG~~ia~~l-a~~g~~V~~~d~~~~~   38 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVC-AVAGYDVVMVDISDAA   38 (282)
T ss_pred             cEEEEEccCHHHHHHHHHH-HHCCCceEEEeCCHHH
Confidence            4799999999999999998 6779999999998754

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=97.08  E-value=0.0013  Score=58.02  Aligned_cols=64  Identities=19%  Similarity=0.245  Sum_probs=49.3

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh-hhCCEEEEe
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVVCTL  243 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~sD~Vvl~  243 (244)
                      -.+|||+|||+-||-+|+.+ ---|-.|+.+||+.-.+.++   .|            +...++.++++. +++|+|.+|
T Consensus        52 tl~IaIIGfGnmGqflAetl-i~aGh~li~hsRsdyssaa~---~y------------g~~~ft~lhdlcerhpDvvLlc  115 (480)
T KOG2380|consen   52 TLVIAIIGFGNMGQFLAETL-IDAGHGLICHSRSDYSSAAE---KY------------GSAKFTLLHDLCERHPDVVLLC  115 (480)
T ss_pred             ceEEEEEecCcHHHHHHHHH-HhcCceeEecCcchhHHHHH---Hh------------cccccccHHHHHhcCCCEEEEE
Confidence            35899999999999999998 89999999999987443322   22            233556777766 468999887


Q ss_pred             C
Q 026023          244 C  244 (244)
Q Consensus       244 ~  244 (244)
                      +
T Consensus       116 t  116 (480)
T KOG2380|consen  116 T  116 (480)
T ss_pred             e
Confidence            4

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=97.07  E-value=0.002  Score=55.35  Aligned_cols=63  Identities=16%  Similarity=0.132  Sum_probs=40.8

Q ss_pred             CEEEEEcCChHHHHHHHHHhcc--CCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHH-hhhCCEEEE
Q 026023          166 QTVGVIGAGRIGSAYARMMVEG--FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVVCT  242 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~a--fG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~sD~Vvl  242 (244)
                      .+|||+|+|.||+.+++.+.+.  -++++.++.++..+..+.+.+            .  .....+++++ ..+.|+|+=
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~------------~--~~~~~~l~~ll~~~~DlVVE   68 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAG------------R--VALLDGLPGLLAWRPDLVVE   68 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhc------------c--CcccCCHHHHhhcCCCEEEE
Confidence            5899999999999999987332  236666654443332222110            1  2245689997 588999874

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=97.05  E-value=0.0025  Score=56.75  Aligned_cols=71  Identities=24%  Similarity=0.323  Sum_probs=49.5

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      .+++||+|.|.+|+.-++.+...+.. +|..|+|+... .+.+.+.+    ++.   ...+....+.++++++||+|+.+
T Consensus       128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~-~~~~~~~~----~~~---g~~v~~~~~~~eav~~aDiVita  199 (325)
T TIGR02371       128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPST-REKFALRA----SDY---EVPVRAATDPREAVEGCDILVTT  199 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHH-HHHHHHHH----Hhh---CCcEEEeCCHHHHhccCCEEEEe
Confidence            46899999999999977665444544 79999998765 23333322    111   12233457999999999999976

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.05  E-value=0.0025  Score=55.69  Aligned_cols=74  Identities=19%  Similarity=0.182  Sum_probs=51.6

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC  241 (244)
Q Consensus       163 l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv  241 (244)
                      +.++++.|+|.|..|+.++..| ...|+ +|..++|+... .+...+.++..   ..  .......+++.+.++++|+||
T Consensus       125 ~~~k~vlIlGaGGaaraia~aL-~~~G~~~I~I~nR~~~k-a~~la~~l~~~---~~--~~~~~~~~~~~~~~~~aDiVI  197 (284)
T PRK12549        125 ASLERVVQLGAGGAGAAVAHAL-LTLGVERLTIFDVDPAR-AAALADELNAR---FP--AARATAGSDLAAALAAADGLV  197 (284)
T ss_pred             ccCCEEEEECCcHHHHHHHHHH-HHcCCCEEEEECCCHHH-HHHHHHHHHhh---CC--CeEEEeccchHhhhCCCCEEE
Confidence            5778999999999999999998 78998 79999998643 23333222110   00  112223356777889999998


Q ss_pred             Ee
Q 026023          242 TL  243 (244)
Q Consensus       242 l~  243 (244)
                      .+
T Consensus       198 na  199 (284)
T PRK12549        198 HA  199 (284)
T ss_pred             EC
Confidence            76

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=97.05  E-value=0.0015  Score=60.06  Aligned_cols=35  Identities=31%  Similarity=0.403  Sum_probs=31.7

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ++|+|+|+|.+|..+|..| ..-|.+|++||+++..
T Consensus         4 ~kI~VIGlG~~G~~~A~~L-a~~G~~V~~~D~~~~~   38 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAF-ASRQKQVIGVDINQHA   38 (415)
T ss_pred             cEEEEECcchhhHHHHHHH-HhCCCEEEEEeCCHHH
Confidence            5899999999999999998 6779999999998754

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=97.04  E-value=0.0012  Score=53.69  Aligned_cols=74  Identities=20%  Similarity=0.319  Sum_probs=45.6

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHH--HHHHhh-hhhhhhcCCCC-------CccccccCCHHHHhhh
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL--EKFVTA-YGQFLKANGEQ-------PVTWKRASSMDEVLRE  236 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~-------~~~~~~~~~l~ell~~  236 (244)
                      +|+|+|.|.+|+.+|..+ -..|++|..||+++....  .+.... +....+.....       .-......+++++. .
T Consensus         1 ~V~ViGaG~mG~~iA~~~-a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~   78 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALF-ARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-D   78 (180)
T ss_dssp             EEEEES-SHHHHHHHHHH-HHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-T
T ss_pred             CEEEEcCCHHHHHHHHHH-HhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-h
Confidence            699999999999999998 577999999999986421  121111 11111111100       11223456888888 9


Q ss_pred             CCEEEE
Q 026023          237 ADVVCT  242 (244)
Q Consensus       237 sD~Vvl  242 (244)
                      ||+|+=
T Consensus        79 adlViE   84 (180)
T PF02737_consen   79 ADLVIE   84 (180)
T ss_dssp             ESEEEE
T ss_pred             hheehh
Confidence            999873

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.04  E-value=0.0017  Score=56.77  Aligned_cols=35  Identities=29%  Similarity=0.486  Sum_probs=31.5

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ++|+|+|.|.+|..+|..| ..-|.+|..||+++..
T Consensus         5 ~kI~vIGaG~mG~~iA~~l-a~~G~~V~l~d~~~~~   39 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVC-ALAGYDVLLNDVSADR   39 (292)
T ss_pred             CEEEEECCcHHHHHHHHHH-HHCCCeEEEEeCCHHH
Confidence            5799999999999999998 5779999999998654

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.03  E-value=0.00092  Score=49.27  Aligned_cols=65  Identities=23%  Similarity=0.222  Sum_probs=45.2

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC  241 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv  241 (244)
                      .++|++|.|+|.|.+|.+=++.| ...|++|..+++.. ...++               .+.+. ...+++-+..+|+|+
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~L-l~~gA~v~vis~~~-~~~~~---------------~i~~~-~~~~~~~l~~~~lV~   65 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLL-LEAGAKVTVISPEI-EFSEG---------------LIQLI-RREFEEDLDGADLVF   65 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHH-CCCTBEEEEEESSE-HHHHT---------------SCEEE-ESS-GGGCTTESEEE
T ss_pred             EcCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEECCch-hhhhh---------------HHHHH-hhhHHHHHhhheEEE
Confidence            48999999999999999999998 89999999999986 21111               11111 124456688889888


Q ss_pred             EeC
Q 026023          242 TLC  244 (244)
Q Consensus       242 l~~  244 (244)
                      .++
T Consensus        66 ~at   68 (103)
T PF13241_consen   66 AAT   68 (103)
T ss_dssp             E-S
T ss_pred             ecC
Confidence            753

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.03  E-value=0.0023  Score=55.79  Aligned_cols=77  Identities=21%  Similarity=0.284  Sum_probs=49.3

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhh----hhhhhcCCCC--------CccccccCCHHHH
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY----GQFLKANGEQ--------PVTWKRASSMDEV  233 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~----~~~~~~~~~~--------~~~~~~~~~l~el  233 (244)
                      ++|+|+|.|.+|..+|..+ ..-|.+|..+|++.... +...+..    ..........        .-......++++.
T Consensus         4 ~kIaViGaG~mG~~iA~~l-a~~G~~V~l~d~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a   81 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQT-AFHGFDVTIYDISDEAL-EKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA   81 (287)
T ss_pred             cEEEEECCCHHHHHHHHHH-HhcCCeEEEEeCCHHHH-HHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH
Confidence            4899999999999999998 56799999999986531 1111100    0000000000        0112234689999


Q ss_pred             hhhCCEEEEeC
Q 026023          234 LREADVVCTLC  244 (244)
Q Consensus       234 l~~sD~Vvl~~  244 (244)
                      ++.||+|+.++
T Consensus        82 ~~~aDlVieav   92 (287)
T PRK08293         82 VKDADLVIEAV   92 (287)
T ss_pred             hcCCCEEEEec
Confidence            99999999864

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=97.01  E-value=0.0037  Score=52.32  Aligned_cols=74  Identities=19%  Similarity=0.171  Sum_probs=46.9

Q ss_pred             EEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          167 TVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       167 tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +|+|+| .|++|+.+++.| ..-|.+|..++|++.. .+.....+.......+. .... ...+..+.++++|+|++++
T Consensus         2 kI~IIGG~G~mG~ala~~L-~~~G~~V~v~~r~~~~-~~~l~~~~~~~~~~~g~-~~~~-~~~~~~ea~~~aDvVilav   76 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRL-AKAGNKIIIGSRDLEK-AEEAAAKALEELGHGGS-DIKV-TGADNAEAAKRADVVILAV   76 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHH-HhCCCEEEEEEcCHHH-HHHHHHHHHhhccccCC-CceE-EEeChHHHHhcCCEEEEEC
Confidence            699997 999999999998 6779999999987644 22211111000000000 0001 1236688899999999875

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=97.01  E-value=0.002  Score=53.86  Aligned_cols=62  Identities=24%  Similarity=0.464  Sum_probs=42.8

Q ss_pred             EEEEEcCChHHHHHHHHHhcc--CCcE-EEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          167 TVGVIGAGRIGSAYARMMVEG--FKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~a--fG~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      +|||||+|.||+.+.+.+ +-  .+.+ +..||++..... +...            .++.....+++|++++.|.|+=
T Consensus         2 ~vgiVGcGaIG~~l~e~v-~~~~~~~e~v~v~D~~~ek~~-~~~~------------~~~~~~~s~ide~~~~~DlvVE   66 (255)
T COG1712           2 KVGIVGCGAIGKFLLELV-RDGRVDFELVAVYDRDEEKAK-ELEA------------SVGRRCVSDIDELIAEVDLVVE   66 (255)
T ss_pred             eEEEEeccHHHHHHHHHH-hcCCcceeEEEEecCCHHHHH-HHHh------------hcCCCccccHHHHhhccceeee
Confidence            799999999999999997 42  3454 778888875522 1111            1112223689999999999874

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.00  E-value=0.022  Score=49.97  Aligned_cols=146  Identities=16%  Similarity=0.151  Sum_probs=86.2

Q ss_pred             HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccHH-HHHHhhccCCcEEEEcccCCCccChHH
Q 026023           33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVNA  104 (244)
Q Consensus        33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~~-~l~~~p~l~~k~I~~~~aG~d~id~~~  104 (244)
                      .++.|++++.+..++ ..+++++.+.+..     .++++++..+  ..+++. +++..+..  |=       +|.+....
T Consensus        56 ~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvq~Plp~~id~~~i~~~I~p~--KD-------VDGl~~~n  125 (295)
T PRK14174         56 CKEIGMNSTVIELPA-DTTEEHLLKKIEDLNNDPDVHGILVQQPLPKQIDEFAVTLAIDPA--KD-------VDGFHPEN  125 (295)
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--cc-------ccccChhh
Confidence            345588887666554 3477777765543     4578888643  234444 34444433  32       22222111


Q ss_pred             HhhCCcEEEec-CCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHH
Q 026023          105 ANKYGIAVGNT-PGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYAR  182 (244)
Q Consensus       105 ~~~~gI~v~n~-~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~  182 (244)
                      .   |-...+. ...+.+++|.-++.++=.                         .+.++.||++.|+|-+. +|+-+|-
T Consensus       126 ~---g~l~~~~~~~~~~PcTp~ail~ll~~-------------------------y~i~l~Gk~vvViGrS~iVG~Pla~  177 (295)
T PRK14174        126 L---GRLVMGHLDKCFVSCTPYGILELLGR-------------------------YNIETKGKHCVVVGRSNIVGKPMAN  177 (295)
T ss_pred             H---HHHhcCCCCCCcCCCCHHHHHHHHHH-------------------------hCCCCCCCEEEEECCCCcchHHHHH
Confidence            1   1011111 123466677765443311                         12469999999999987 5999999


Q ss_pred             HHhcc---CCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          183 MMVEG---FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       183 ~la~a---fG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +|.+.   -|++|..+....                            .++.+.+++||+|+..+
T Consensus       178 lL~~~~~~~~atVt~~hs~t----------------------------~~l~~~~~~ADIvI~Av  214 (295)
T PRK14174        178 LMLQKLKESNCTVTICHSAT----------------------------KDIPSYTRQADILIAAI  214 (295)
T ss_pred             HHHhccccCCCEEEEEeCCc----------------------------hhHHHHHHhCCEEEEec
Confidence            98322   478887776432                            36999999999999764

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=97.00  E-value=0.0028  Score=50.59  Aligned_cols=55  Identities=22%  Similarity=0.332  Sum_probs=43.3

Q ss_pred             cccCCCEEEEEcCCh-HHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023          161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~-IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~  239 (244)
                      .++.||++.|+|-+. +|+-++.+| ..-|+.|..++.+.                            .++++.+++||+
T Consensus        32 ~~l~Gk~v~VvGrs~~VG~Pla~lL-~~~~atVt~~h~~T----------------------------~~l~~~~~~ADI   82 (160)
T PF02882_consen   32 IDLEGKKVVVVGRSNIVGKPLAMLL-LNKGATVTICHSKT----------------------------KNLQEITRRADI   82 (160)
T ss_dssp             -STTT-EEEEE-TTTTTHHHHHHHH-HHTT-EEEEE-TTS----------------------------SSHHHHHTTSSE
T ss_pred             CCCCCCEEEEECCcCCCChHHHHHH-HhCCCeEEeccCCC----------------------------CcccceeeeccE
Confidence            469999999999996 999999999 89999999887642                            479999999999


Q ss_pred             EEEeC
Q 026023          240 VCTLC  244 (244)
Q Consensus       240 Vvl~~  244 (244)
                      |+..+
T Consensus        83 VVsa~   87 (160)
T PF02882_consen   83 VVSAV   87 (160)
T ss_dssp             EEE-S
T ss_pred             Eeeee
Confidence            99753

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.98  E-value=0.001  Score=58.35  Aligned_cols=46  Identities=20%  Similarity=0.425  Sum_probs=38.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhh
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG  211 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~  211 (244)
                      .|+.+||+|+|-+|..-.+. ||||||+|.++|++.++. |+.++.+|
T Consensus       181 pG~~vgI~GlGGLGh~aVq~-AKAMG~rV~vis~~~~kk-eea~~~LG  226 (360)
T KOG0023|consen  181 PGKWVGIVGLGGLGHMAVQY-AKAMGMRVTVISTSSKKK-EEAIKSLG  226 (360)
T ss_pred             CCcEEEEecCcccchHHHHH-HHHhCcEEEEEeCCchhH-HHHHHhcC
Confidence            89999999999999888888 799999999999997553 44444443

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=96.96  E-value=0.002  Score=60.29  Aligned_cols=40  Identities=25%  Similarity=0.350  Sum_probs=35.8

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .++.+++++|+|.|.+|+.++..| ...|++|..++|+...
T Consensus       328 ~~~~~k~vlIiGaGgiG~aia~~L-~~~G~~V~i~~R~~~~  367 (477)
T PRK09310        328 IPLNNQHVAIVGAGGAAKAIATTL-ARAGAELLIFNRTKAH  367 (477)
T ss_pred             CCcCCCEEEEEcCcHHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            467899999999999999999998 7999999999987643

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.96  E-value=0.003  Score=58.40  Aligned_cols=74  Identities=26%  Similarity=0.341  Sum_probs=50.8

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC  241 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv  241 (244)
                      .+.++++.|+|.|.+|..+|+.| ...|++|.++|+...+..++..+.+    ...+   ..+...+..++.+...|+|+
T Consensus         2 ~~~~k~v~iiG~g~~G~~~A~~l-~~~G~~V~~~d~~~~~~~~~~~~~l----~~~~---~~~~~~~~~~~~~~~~d~vv   73 (450)
T PRK14106          2 ELKGKKVLVVGAGVSGLALAKFL-KKLGAKVILTDEKEEDQLKEALEEL----GELG---IELVLGEYPEEFLEGVDLVV   73 (450)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCchHHHHHHHHHH----HhcC---CEEEeCCcchhHhhcCCEEE
Confidence            36789999999999999999998 7999999999998643332222111    1111   12222233456778899998


Q ss_pred             Ee
Q 026023          242 TL  243 (244)
Q Consensus       242 l~  243 (244)
                      ..
T Consensus        74 ~~   75 (450)
T PRK14106         74 VS   75 (450)
T ss_pred             EC
Confidence            75

>PRK14982 acyl-ACP reductase; Provisional

Probab=96.95  E-value=0.0022  Score=57.24  Aligned_cols=70  Identities=31%  Similarity=0.364  Sum_probs=49.6

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCC
Q 026023          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (244)
Q Consensus       161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (244)
                      .++.|++|.|+|. |.||+.+++.|+...|. +++.++|+... .++....+            ......++++.++++|
T Consensus       151 ~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~r-l~~La~el------------~~~~i~~l~~~l~~aD  217 (340)
T PRK14982        151 IDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQER-LQELQAEL------------GGGKILSLEEALPEAD  217 (340)
T ss_pred             cCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHH-HHHHHHHh------------ccccHHhHHHHHccCC
Confidence            4689999999998 89999999998434675 89999987543 22211111            0012347889999999


Q ss_pred             EEEEe
Q 026023          239 VVCTL  243 (244)
Q Consensus       239 ~Vvl~  243 (244)
                      +|+..
T Consensus       218 iVv~~  222 (340)
T PRK14982        218 IVVWV  222 (340)
T ss_pred             EEEEC
Confidence            88753

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=96.94  E-value=0.0026  Score=59.58  Aligned_cols=70  Identities=16%  Similarity=0.220  Sum_probs=49.5

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhh---CCEEEEe
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVVCTL  243 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---sD~Vvl~  243 (244)
                      +||+||+|..|+.+|+.| ..-|.+|.+|||++... +++.+..    ...+...  .....+++|+.+.   +|+|+++
T Consensus         8 ~IG~IGLG~MG~~mA~nL-~~~G~~V~V~NRt~~k~-~~l~~~~----~~~Ga~~--~~~a~s~~e~v~~l~~~dvIi~~   79 (493)
T PLN02350          8 RIGLAGLAVMGQNLALNI-AEKGFPISVYNRTTSKV-DETVERA----KKEGNLP--LYGFKDPEDFVLSIQKPRSVIIL   79 (493)
T ss_pred             CEEEEeeHHHHHHHHHHH-HhCCCeEEEECCCHHHH-HHHHHhh----hhcCCcc--cccCCCHHHHHhcCCCCCEEEEE
Confidence            699999999999999999 67899999999987652 3332210    0001111  1234688898886   9999987


Q ss_pred             C
Q 026023          244 C  244 (244)
Q Consensus       244 ~  244 (244)
                      +
T Consensus        80 v   80 (493)
T PLN02350         80 V   80 (493)
T ss_pred             C
Confidence            4

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=96.92  E-value=0.004  Score=54.85  Aligned_cols=72  Identities=15%  Similarity=0.254  Sum_probs=53.2

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      -+++||+|.|..|+.-++.++..++. +|..|+|++.. .++|.+.+    ++.  ....+...++.++.+++||+|+.+
T Consensus       117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~-a~~f~~~~----~~~--~~~~v~~~~~~~eav~~aDIV~ta  189 (301)
T PRK06407        117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDH-ARAFAERF----SKE--FGVDIRPVDNAEAALRDADTITSI  189 (301)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHH-HHHHHHHH----HHh--cCCcEEEeCCHHHHHhcCCEEEEe
Confidence            46999999999999988887667777 69999999755 34444333    111  123344557999999999999864

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=96.91  E-value=0.0039  Score=55.47  Aligned_cols=73  Identities=14%  Similarity=0.125  Sum_probs=52.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      ..++++|+|.|..|+..++.|+..++. +|..|+|++.. .+++.+.+..      ...+.+...+++++.+++||+|+.
T Consensus       128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~-a~~~a~~~~~------~~g~~v~~~~~~~~av~~aDiVvt  200 (326)
T TIGR02992       128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAK-AEALALQLSS------LLGIDVTAATDPRAAMSGADIIVT  200 (326)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHH-HHHHHHHHHh------hcCceEEEeCCHHHHhccCCEEEE
Confidence            346899999999999999998436885 69999998754 3444333211      001233445789999999999997


Q ss_pred             e
Q 026023          243 L  243 (244)
Q Consensus       243 ~  243 (244)
                      +
T Consensus       201 a  201 (326)
T TIGR02992       201 T  201 (326)
T ss_pred             e
Confidence            5

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.91  E-value=0.0032  Score=50.14  Aligned_cols=41  Identities=17%  Similarity=0.078  Sum_probs=36.4

Q ss_pred             ccccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       160 ~~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ..+|.|++|.|+|.|++|.+.++.| ...|++|..+++...+
T Consensus         8 ~l~l~~~~vlVvGGG~va~rka~~L-l~~ga~V~VIsp~~~~   48 (157)
T PRK06719          8 MFNLHNKVVVIIGGGKIAYRKASGL-KDTGAFVTVVSPEICK   48 (157)
T ss_pred             EEEcCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEcCccCH
Confidence            3579999999999999999999998 7999999999876544

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=96.91  E-value=0.0031  Score=55.81  Aligned_cols=70  Identities=26%  Similarity=0.315  Sum_probs=49.1

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      +++||+|.|..|+.-++.++..|+. +|..|+|++.. .+++.+.+    +.   ..+.+...++.++.+++||+|+.+
T Consensus       129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~-~~~~~~~~----~~---~~~~v~~~~~~~~av~~aDii~ta  199 (313)
T PF02423_consen  129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPER-AEAFAARL----RD---LGVPVVAVDSAEEAVRGADIIVTA  199 (313)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHH-HHHHHHHH----HC---CCTCEEEESSHHHHHTTSSEEEE-
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhH-HHHHHHhh----cc---ccccceeccchhhhcccCCEEEEc
Confidence            4899999999999999988777888 69999998754 35554433    22   245566678999999999999865

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.91  E-value=0.0032  Score=54.99  Aligned_cols=35  Identities=26%  Similarity=0.548  Sum_probs=31.8

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ++|||||.|.+|..+|..+ ...|.+|+.||+++..
T Consensus         6 ~~V~ViGaG~mG~~iA~~~-a~~G~~V~l~d~~~~~   40 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVC-ARAGVDVLVFETTEEL   40 (286)
T ss_pred             cEEEEEcccHHHHHHHHHH-HhCCCEEEEEECCHHH
Confidence            3899999999999999998 4779999999999865

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=96.90  E-value=0.0015  Score=59.08  Aligned_cols=68  Identities=18%  Similarity=0.305  Sum_probs=47.9

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      .++|||+|-|..|+.++..+ +.+|.+|+.+|+++........+.+       -  ..++...+.+.++.+.+|+|+.
T Consensus         2 ~~~igilG~Gql~~ml~~aa-~~lG~~v~~~d~~~~~pa~~~ad~~-------~--~~~~~D~~~l~~~a~~~dvit~   69 (372)
T PRK06019          2 MKTIGIIGGGQLGRMLALAA-APLGYKVIVLDPDPDSPAAQVADEV-------I--VADYDDVAALRELAEQCDVITY   69 (372)
T ss_pred             CCEEEEECCCHHHHHHHHHH-HHcCCEEEEEeCCCCCchhHhCceE-------E--ecCCCCHHHHHHHHhcCCEEEe
Confidence            37899999999999999994 9999999999998765322211110       0  0111122358889999999875

>PRK08291 ectoine utilization protein EutC; Validated

Probab=96.81  E-value=0.0056  Score=54.55  Aligned_cols=73  Identities=18%  Similarity=0.200  Sum_probs=51.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      ..++++|+|.|.+|+..+..++...+. +|..|+|++.. .+++.+.+.+      ...+.+...+++++++++||+|+.
T Consensus       131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~-a~~l~~~~~~------~~g~~v~~~~d~~~al~~aDiVi~  203 (330)
T PRK08291        131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAK-AEAYAADLRA------ELGIPVTVARDVHEAVAGADIIVT  203 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHH-HHHHHHHHhh------ccCceEEEeCCHHHHHccCCEEEE
Confidence            347899999999999988887334664 79999998654 3444333211      011333445789999999999987


Q ss_pred             e
Q 026023          243 L  243 (244)
Q Consensus       243 ~  243 (244)
                      +
T Consensus       204 a  204 (330)
T PRK08291        204 T  204 (330)
T ss_pred             e
Confidence            5

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=96.79  E-value=0.0032  Score=58.76  Aligned_cols=67  Identities=21%  Similarity=0.360  Sum_probs=46.3

Q ss_pred             EEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh---hhCCEEEEeC
Q 026023          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---READVVCTLC  244 (244)
Q Consensus       168 vgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---~~sD~Vvl~~  244 (244)
                      |||||+|..|+.+|+.| ..-|.+|.+|||++... +++.+.++     .+ .  ......++.++.   +++|+|++++
T Consensus         2 IG~IGLG~MG~~mA~nL-~~~G~~V~v~drt~~~~-~~l~~~~~-----~g-~--~~~~~~s~~e~v~~l~~~dvIil~v   71 (467)
T TIGR00873         2 IGVIGLAVMGSNLALNM-ADHGFTVSVYNRTPEKT-DEFLAEHA-----KG-K--KIVGAYSIEEFVQSLERPRKIMLMV   71 (467)
T ss_pred             EEEEeeHHHHHHHHHHH-HhcCCeEEEEeCCHHHH-HHHHhhcc-----CC-C--CceecCCHHHHHhhcCCCCEEEEEC
Confidence            89999999999999999 68899999999987652 33221100     01 0  112335677766   4689988864

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=96.76  E-value=0.0049  Score=53.81  Aligned_cols=35  Identities=20%  Similarity=0.468  Sum_probs=31.8

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ++|+|+|.|.+|..+|..+ ...|.+|+.+|+++..
T Consensus         4 ~~I~ViGaG~mG~~iA~~l-a~~G~~V~l~d~~~~~   38 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVF-ARTGYDVTIVDVSEEI   38 (291)
T ss_pred             cEEEEECccHHHHHHHHHH-HhcCCeEEEEeCCHHH
Confidence            5899999999999999998 6789999999998754

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=96.76  E-value=0.0051  Score=53.62  Aligned_cols=67  Identities=30%  Similarity=0.361  Sum_probs=52.8

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC  241 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv  241 (244)
                      -|.||||+|||||+-|..=|.-| +--|.+|++=-|....+++...+           ..+   ...+.+|+.++||+|.
T Consensus        15 ~LkgK~iaIIGYGsQG~ahalNL-RDSGlnViiGlr~g~~s~~kA~~-----------dGf---~V~~v~ea~k~ADvim   79 (338)
T COG0059          15 LLKGKKVAIIGYGSQGHAQALNL-RDSGLNVIIGLRKGSSSWKKAKE-----------DGF---KVYTVEEAAKRADVVM   79 (338)
T ss_pred             HhcCCeEEEEecChHHHHHHhhh-hhcCCcEEEEecCCchhHHHHHh-----------cCC---EeecHHHHhhcCCEEE
Confidence            48999999999999999999999 99999988877776654443211           122   2358999999999998


Q ss_pred             Ee
Q 026023          242 TL  243 (244)
Q Consensus       242 l~  243 (244)
                      +-
T Consensus        80 ~L   81 (338)
T COG0059          80 IL   81 (338)
T ss_pred             Ee
Confidence            64

>PRK06823 ornithine cyclodeaminase; Validated

Probab=96.72  E-value=0.0068  Score=53.71  Aligned_cols=71  Identities=15%  Similarity=0.192  Sum_probs=52.8

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      -++++|+|.|..|+.-++.+...+.. +|..|+|++.. .+.+.+..    ++   ..+.+...++.++.++.||+|+.+
T Consensus       128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~-a~~~~~~~----~~---~~~~v~~~~~~~~av~~ADIV~ta  199 (315)
T PRK06823        128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETA-LEEYRQYA----QA---LGFAVNTTLDAAEVAHAANLIVTT  199 (315)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHH-HHHHHHHH----Hh---cCCcEEEECCHHHHhcCCCEEEEe
Confidence            46999999999999998888667776 79999999765 24433322    11   124444567999999999999865

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.72  E-value=0.0018  Score=53.64  Aligned_cols=37  Identities=30%  Similarity=0.372  Sum_probs=34.0

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCC
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY  198 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~  198 (244)
                      ..|.+++|.|+|.|.+|..+|+.| ...|. ++..+|+.
T Consensus        17 ~kl~~~~VlviG~GglGs~ia~~L-a~~Gv~~i~lvD~d   54 (202)
T TIGR02356        17 QRLLNSHVLIIGAGGLGSPAALYL-AGAGVGTIVIVDDD   54 (202)
T ss_pred             HHhcCCCEEEECCCHHHHHHHHHH-HHcCCCeEEEecCC
Confidence            468999999999999999999999 68998 89999987

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.71  E-value=0.0049  Score=54.90  Aligned_cols=37  Identities=22%  Similarity=0.360  Sum_probs=34.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .|++|+|+|+|-.|-.-.+. |+++|++|++++++.++
T Consensus       166 pG~~V~I~G~GGlGh~avQ~-Aka~ga~Via~~~~~~K  202 (339)
T COG1064         166 PGKWVAVVGAGGLGHMAVQY-AKAMGAEVIAITRSEEK  202 (339)
T ss_pred             CCCEEEEECCcHHHHHHHHH-HHHcCCeEEEEeCChHH
Confidence            58999999999999999999 59999999999999876

>PRK07589 ornithine cyclodeaminase; Validated

Probab=96.69  E-value=0.0074  Score=54.17  Aligned_cols=71  Identities=20%  Similarity=0.281  Sum_probs=52.8

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      -++++|+|.|..++.-++.+...+.. +|..|+|++.. .+.+.+.+    +.   ..+.+...+++++.+++||+|+.+
T Consensus       129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~-a~~~~~~~----~~---~~~~v~~~~~~~~av~~ADIIvta  200 (346)
T PRK07589        129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAA-TAKLARNL----AG---PGLRIVACRSVAEAVEGADIITTV  200 (346)
T ss_pred             CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHH-HHHHHHHH----Hh---cCCcEEEeCCHHHHHhcCCEEEEe
Confidence            36899999999999998876667777 69999999754 34444332    11   123444567999999999999875

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=96.69  E-value=0.0046  Score=46.80  Aligned_cols=32  Identities=22%  Similarity=0.418  Sum_probs=26.5

Q ss_pred             EEEEEc-CChHHHHHHHHHhccCCcEEEEEcCC
Q 026023          167 TVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLY  198 (244)
Q Consensus       167 tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~  198 (244)
                      +|+|+| +|.+|+++.++|++...+++...-.+
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~   33 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSS   33 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEES
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeee
Confidence            699999 99999999999988888875554433

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=96.69  E-value=0.0036  Score=55.82  Aligned_cols=38  Identities=16%  Similarity=0.123  Sum_probs=34.4

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcc
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA  200 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~  200 (244)
                      ++.|+++.|||+|.+|+.+++.| ..-|. +|...+|+..
T Consensus       171 ~l~~k~vLvIGaGem~~l~a~~L-~~~g~~~i~v~nRt~~  209 (338)
T PRK00676        171 KSKKASLLFIGYSEINRKVAYYL-QRQGYSRITFCSRQQL  209 (338)
T ss_pred             CccCCEEEEEcccHHHHHHHHHH-HHcCCCEEEEEcCCcc
Confidence            48899999999999999999999 78996 6999999864

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=96.68  E-value=0.006  Score=53.18  Aligned_cols=73  Identities=22%  Similarity=0.303  Sum_probs=45.6

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +|+|+|.|++|..+|..| ..-|.+|..++|++.. .+.... -|.... .+..........+..++ +.+|+|++++
T Consensus         2 ~I~IiG~G~~G~~~a~~L-~~~g~~V~~~~r~~~~-~~~~~~-~g~~~~-~~~~~~~~~~~~~~~~~-~~~d~vila~   74 (304)
T PRK06522          2 KIAILGAGAIGGLFGAAL-AQAGHDVTLVARRGAH-LDALNE-NGLRLE-DGEITVPVLAADDPAEL-GPQDLVILAV   74 (304)
T ss_pred             EEEEECCCHHHHHHHHHH-HhCCCeEEEEECChHH-HHHHHH-cCCccc-CCceeecccCCCChhHc-CCCCEEEEec
Confidence            699999999999999998 5679999999996533 122111 111000 00000111223456666 8999999874

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.67  E-value=0.0049  Score=50.38  Aligned_cols=76  Identities=22%  Similarity=0.352  Sum_probs=43.0

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHh--------hhhhhhhcCCCCCccccccCCHHHHhhhC
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT--------AYGQFLKANGEQPVTWKRASSMDEVLREA  237 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~ell~~s  237 (244)
                      ++|+|+|+|.+|-.+|-.| ...|.+|+++|..++. .+..-+        ....++++.. .........+.++.+++|
T Consensus         1 M~I~ViGlGyvGl~~A~~l-A~~G~~V~g~D~~~~~-v~~l~~g~~p~~E~~l~~ll~~~~-~~~~l~~t~~~~~ai~~a   77 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAAL-AEKGHQVIGVDIDEEK-VEALNNGELPIYEPGLDELLKENV-SAGRLRATTDIEEAIKDA   77 (185)
T ss_dssp             -EEEEE--STTHHHHHHHH-HHTTSEEEEE-S-HHH-HHHHHTTSSSS-CTTHHHHHHHHH-HTTSEEEESEHHHHHHH-
T ss_pred             CEEEEECCCcchHHHHHHH-HhCCCEEEEEeCChHH-HHHHhhccccccccchhhhhcccc-ccccchhhhhhhhhhhcc
Confidence            4799999999999999999 6999999999998753 111000        0000011100 001123346788889999


Q ss_pred             CEEEEeC
Q 026023          238 DVVCTLC  244 (244)
Q Consensus       238 D~Vvl~~  244 (244)
                      |++++++
T Consensus        78 dv~~I~V   84 (185)
T PF03721_consen   78 DVVFICV   84 (185)
T ss_dssp             SEEEE--
T ss_pred             ceEEEec
Confidence            9999875

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.67  E-value=0.0049  Score=57.85  Aligned_cols=68  Identities=24%  Similarity=0.202  Sum_probs=47.0

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       163 l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      ..|++|.|+|+|.+|...++.| +..|++|.++|..+.. .+. ...       .+.   .........+.++.+|+|+.
T Consensus        10 ~~~~~v~V~G~G~sG~aa~~~L-~~~G~~v~~~D~~~~~-~~~-l~~-------~g~---~~~~~~~~~~~l~~~D~VV~   76 (488)
T PRK03369         10 LPGAPVLVAGAGVTGRAVLAAL-TRFGARPTVCDDDPDA-LRP-HAE-------RGV---ATVSTSDAVQQIADYALVVT   76 (488)
T ss_pred             cCCCeEEEEcCCHHHHHHHHHH-HHCCCEEEEEcCCHHH-HHH-HHh-------CCC---EEEcCcchHhHhhcCCEEEE
Confidence            5789999999999999999998 8999999999976432 121 111       111   11111234466788999987


Q ss_pred             e
Q 026023          243 L  243 (244)
Q Consensus       243 ~  243 (244)
                      +
T Consensus        77 S   77 (488)
T PRK03369         77 S   77 (488)
T ss_pred             C
Confidence            4

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.64  E-value=0.01  Score=46.34  Aligned_cols=55  Identities=22%  Similarity=0.309  Sum_probs=46.7

Q ss_pred             ccccCCCEEEEEcCCh-HHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCC
Q 026023          160 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (244)
Q Consensus       160 ~~~l~g~tvgIvG~G~-IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (244)
                      +.++.||++.|+|-+. +|+.+|.+| ..-|++|..++++.                            .++++..++||
T Consensus        23 ~~~~~gk~v~VvGrs~~vG~pla~lL-~~~gatV~~~~~~t----------------------------~~l~~~v~~AD   73 (140)
T cd05212          23 GVRLDGKKVLVVGRSGIVGAPLQCLL-QRDGATVYSCDWKT----------------------------IQLQSKVHDAD   73 (140)
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEeCCCC----------------------------cCHHHHHhhCC
Confidence            3579999999999876 689999998 78999999988542                            37899999999


Q ss_pred             EEEEe
Q 026023          239 VVCTL  243 (244)
Q Consensus       239 ~Vvl~  243 (244)
                      +|+..
T Consensus        74 IVvsA   78 (140)
T cd05212          74 VVVVG   78 (140)
T ss_pred             EEEEe
Confidence            99975

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=96.63  E-value=0.0027  Score=57.62  Aligned_cols=74  Identities=27%  Similarity=0.348  Sum_probs=45.5

Q ss_pred             EEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          168 VGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       168 vgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      |+|+|.|.+|+.+++.|++..+. +|...+|+.... +...+.+  ...+.....+.+....+|.++++++|+|+.++
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~-~~~~~~~--~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~   75 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKA-ERLAEKL--LGDRVEAVQVDVNDPESLAELLRGCDVVINCA   75 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHH-HHHHT----TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-S
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHH-HHHHhhc--cccceeEEEEecCCHHHHHHHHhcCCEEEECC
Confidence            68999999999999999766667 999999998652 2211100  00001111222223345889999999999764

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PLN02477 glutamate dehydrogenase

Probab=96.61  E-value=0.0049  Score=56.45  Aligned_cols=36  Identities=22%  Similarity=0.256  Sum_probs=32.5

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCC
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~  198 (244)
                      ++.|++|.|.|||++|+.+|+.| ...|++|++++.+
T Consensus       203 ~l~g~~VaIqGfGnVG~~~A~~L-~e~GakVVaVsD~  238 (410)
T PLN02477        203 SIAGQTFVIQGFGNVGSWAAQLI-HEKGGKIVAVSDI  238 (410)
T ss_pred             CccCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEECC
Confidence            68999999999999999999998 8999999966544

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=96.60  E-value=0.0085  Score=51.50  Aligned_cols=64  Identities=22%  Similarity=0.296  Sum_probs=43.8

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhccCCcEEEE-EcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       166 ~tvgIvG~-G~IG~~vA~~la~afG~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      .+|+|+|+ |++|+.+++.+.+.-++++.+ +|+.+... ..           .  ...+.....+++++++.+|+|+..
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~-~~-----------~--~~~~i~~~~dl~~ll~~~DvVid~   67 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPL-VG-----------Q--GALGVAITDDLEAVLADADVLIDF   67 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccc-cc-----------c--CCCCccccCCHHHhccCCCEEEEC
Confidence            37999998 999999999973334788666 66654321 11           0  112233457999999999999853

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=96.60  E-value=0.0046  Score=54.03  Aligned_cols=74  Identities=15%  Similarity=0.276  Sum_probs=45.8

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcC-CCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-GEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +|+|+|.|.+|..+|..| ..-|.+|..++| +.. .+.. ...|-..... +..........+..+....+|+|++++
T Consensus         2 kI~IiG~G~iG~~~a~~L-~~~g~~V~~~~r-~~~-~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilav   76 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRL-LEAGRDVTFLVR-PKR-AKAL-RERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAV   76 (305)
T ss_pred             eEEEECCCHHHHHHHHHH-HHCCCceEEEec-HHH-HHHH-HhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEe
Confidence            699999999999999999 466999999998 322 2221 1111111100 011111112346677778999999875

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=96.58  E-value=0.0042  Score=56.64  Aligned_cols=72  Identities=17%  Similarity=0.322  Sum_probs=46.0

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhh--------hhhhhhcCCCCCccccccCCHHHHhhhCC
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA--------YGQFLKANGEQPVTWKRASSMDEVLREAD  238 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (244)
                      +|+|+|+|.+|..+|..+|  .|.+|++||++...- +..-+.        +.....+   .........+..+..+.||
T Consensus         2 kI~VIGlGyvGl~~A~~lA--~G~~VigvD~d~~kv-~~l~~g~~~~~e~~l~~~l~~---~~~~l~~t~~~~~~~~~ad   75 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIA--QNHEVVALDILPSRV-AMLNDRISPIVDKEIQQFLQS---DKIHFNATLDKNEAYRDAD   75 (388)
T ss_pred             EEEEECCCHHHHHHHHHHH--hCCcEEEEECCHHHH-HHHHcCCCCCCCcCHHHHHHh---CCCcEEEecchhhhhcCCC
Confidence            6999999999999998873  499999999987541 221110        0000000   0111222234778889999


Q ss_pred             EEEEeC
Q 026023          239 VVCTLC  244 (244)
Q Consensus       239 ~Vvl~~  244 (244)
                      +|++++
T Consensus        76 ~vii~V   81 (388)
T PRK15057         76 YVIIAT   81 (388)
T ss_pred             EEEEeC
Confidence            999875

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.56  E-value=0.0038  Score=52.36  Aligned_cols=39  Identities=23%  Similarity=0.271  Sum_probs=33.1

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      .++.|++|.|.|||++|+.+|+.| ...|.+|++++.+..
T Consensus        19 ~~l~g~~vaIqGfGnVG~~~a~~L-~~~G~~vV~vsD~~g   57 (217)
T cd05211          19 DSLEGLTVAVQGLGNVGWGLAKKL-AEEGGKVLAVSDPDG   57 (217)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEEcCCC
Confidence            358999999999999999999999 899998777655443

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=96.54  E-value=0.012  Score=52.66  Aligned_cols=76  Identities=24%  Similarity=0.259  Sum_probs=44.4

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHH-hhhh-----hhhhcCC-CCCccccccCCHHHHhhhCCE
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV-TAYG-----QFLKANG-EQPVTWKRASSMDEVLREADV  239 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~-~~~~-----~~~~~~~-~~~~~~~~~~~l~ell~~sD~  239 (244)
                      +|||+|+|+||+++++.++..=++++.+...+. ++...+. ..+|     ..-.... ....+..-..++++++..+|+
T Consensus         3 kVaI~G~GrIGr~va~al~~~~d~eLvav~d~~-~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV   81 (341)
T PRK04207          3 KVGVNGYGTIGKRVADAVAAQPDMELVGVAKTK-PDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI   81 (341)
T ss_pred             EEEEECCCHHHHHHHHHHhcCCCcEEEEEECCC-hHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence            799999999999999987445578988876643 2212211 1111     0000000 000112223578899999999


Q ss_pred             EEEe
Q 026023          240 VCTL  243 (244)
Q Consensus       240 Vvl~  243 (244)
                      |+.+
T Consensus        82 VIda   85 (341)
T PRK04207         82 VVDA   85 (341)
T ss_pred             EEEC
Confidence            9875

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=96.52  E-value=0.0042  Score=53.24  Aligned_cols=36  Identities=19%  Similarity=0.325  Sum_probs=32.7

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcC
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDL  197 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~  197 (244)
                      .++.|+||.|-|||++|+.+|+.| ..+|++|++++.
T Consensus        34 ~~l~g~~vaIqGfGnVG~~~a~~L-~e~GakvvaVsD   69 (254)
T cd05313          34 ETLKGKRVAISGSGNVAQYAAEKL-LELGAKVVTLSD   69 (254)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEC
Confidence            468999999999999999999998 899999996655

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=96.51  E-value=0.0041  Score=49.87  Aligned_cols=40  Identities=25%  Similarity=0.341  Sum_probs=33.3

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ..+...++.|+|.|+.|+..++.+ +++|++|..+|.++..
T Consensus        16 ~~~~p~~vvv~G~G~vg~gA~~~~-~~lGa~v~~~d~~~~~   55 (168)
T PF01262_consen   16 GGVPPAKVVVTGAGRVGQGAAEIA-KGLGAEVVVPDERPER   55 (168)
T ss_dssp             TEE-T-EEEEESTSHHHHHHHHHH-HHTT-EEEEEESSHHH
T ss_pred             CCCCCeEEEEECCCHHHHHHHHHH-hHCCCEEEeccCCHHH
Confidence            457889999999999999999997 9999999999998653

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=96.50  E-value=0.011  Score=52.30  Aligned_cols=74  Identities=19%  Similarity=0.295  Sum_probs=46.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCc--EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC  241 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv  241 (244)
                      .+++|+|+|.|+||..+|-.| ...|.  ++..+|.+.......-.| +.... ... ..... ...+. +-+++||+|+
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l-~~~~~~~el~L~D~~~~~~~g~~~D-l~~~~-~~~-~~~~i-~~~~~-~~~~~adivI   78 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYAL-VNQGIADELVIIDINKEKAEGDAMD-LSHAV-PFT-SPTKI-YAGDY-SDCKDADLVV   78 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HhcCCCCEEEEEeCCCchhHHHHHH-HHhhc-ccc-CCeEE-EeCCH-HHhCCCCEEE
Confidence            567999999999999999997 67888  799999875432111111 10000 000 01122 22344 5589999999


Q ss_pred             Ee
Q 026023          242 TL  243 (244)
Q Consensus       242 l~  243 (244)
                      +.
T Consensus        79 it   80 (315)
T PRK00066         79 IT   80 (315)
T ss_pred             Ee
Confidence            86

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=96.47  E-value=0.0052  Score=54.69  Aligned_cols=33  Identities=18%  Similarity=0.281  Sum_probs=29.6

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~  199 (244)
                      .+|+|+|.|.+|..+|..| ..-|.+|..++|++
T Consensus         3 mkI~IiG~G~mG~~~A~~L-~~~G~~V~~~~r~~   35 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRL-AAAGADVTLIGRAR   35 (341)
T ss_pred             ceEEEECCCHHHHHHHHHH-HhcCCcEEEEecHH
Confidence            4699999999999999998 57799999999864

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=96.42  E-value=0.0073  Score=42.84  Aligned_cols=35  Identities=34%  Similarity=0.569  Sum_probs=31.5

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccC-CcEEEEEcC
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDL  197 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~af-G~~V~~~~~  197 (244)
                      .+.+++++|+|.|.+|+.+++.| ..+ +.+|..++|
T Consensus        20 ~~~~~~v~i~G~G~~g~~~a~~l-~~~~~~~v~v~~r   55 (86)
T cd05191          20 SLKGKTVVVLGAGEVGKGIAKLL-ADEGGKKVVLCDR   55 (86)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEEcC
Confidence            47899999999999999999998 677 678999988

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PTZ00117 malate dehydrogenase; Provisional

Probab=96.38  E-value=0.016  Score=51.41  Aligned_cols=77  Identities=19%  Similarity=0.283  Sum_probs=48.1

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhccCC-cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023          163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC  241 (244)
Q Consensus       163 l~g~tvgIvG~G~IG~~vA~~la~afG-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv  241 (244)
                      +..++|+|+|.|.+|..+|-.+ ...| ..+..+|.........-.+.... . .............+.+ .++.||+|+
T Consensus         3 ~~~~KI~IIGaG~vG~~ia~~l-~~~~~~~l~L~Di~~~~~~g~~lDl~~~-~-~~~~~~~~i~~~~d~~-~l~~ADiVV   78 (319)
T PTZ00117          3 VKRKKISMIGAGQIGSTVALLI-LQKNLGDVVLYDVIKGVPQGKALDLKHF-S-TLVGSNINILGTNNYE-DIKDSDVVV   78 (319)
T ss_pred             CCCcEEEEECCCHHHHHHHHHH-HHCCCCeEEEEECCCccchhHHHHHhhh-c-cccCCCeEEEeCCCHH-HhCCCCEEE
Confidence            4567999999999999999987 5667 68999999764311111111000 0 0000011222235666 779999999


Q ss_pred             Ee
Q 026023          242 TL  243 (244)
Q Consensus       242 l~  243 (244)
                      ++
T Consensus        79 it   80 (319)
T PTZ00117         79 IT   80 (319)
T ss_pred             EC
Confidence            86

>PRK04284 ornithine carbamoyltransferase; Provisional

Probab=96.37  E-value=0.057  Score=48.24  Aligned_cols=112  Identities=17%  Similarity=0.158  Sum_probs=68.1

Q ss_pred             HHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCC--hHHHHHH
Q 026023          104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG--RIGSAYA  181 (244)
Q Consensus       104 ~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G--~IG~~vA  181 (244)
                      .+.-.+|+|.|..+.+.-|+=-.+=.+.+.  +.+        .|             .+.|++|+++|=+  ++..+++
T Consensus       117 ~a~~s~vPVINa~~~~~HPtQaL~Dl~Ti~--e~~--------~g-------------~l~g~kia~vGD~~~~v~~Sl~  173 (332)
T PRK04284        117 LAEYSGVPVWNGLTDEDHPTQVLADFLTAK--EHL--------KK-------------PYKDIKFTYVGDGRNNVANALM  173 (332)
T ss_pred             HHHhCCCCEEECCCCCCChHHHHHHHHHHH--HHh--------cC-------------CcCCcEEEEecCCCcchHHHHH
Confidence            344458999998765544443333233332  110        01             3789999999975  8899999


Q ss_pred             HHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       182 ~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      ..+ ..||++|....|..-...++..+..-......+   ..+....++++.++.+|+|..
T Consensus       174 ~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~ea~~~aDvvy~  230 (332)
T PRK04284        174 QGA-AIMGMDFHLVCPKELNPDDELLNKCKEIAAETG---GKITITDDIDEGVKGSDVIYT  230 (332)
T ss_pred             HHH-HHcCCEEEEECCccccCCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCEEEE
Confidence            997 799999999998642211222110000001111   123345799999999999975

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=96.37  E-value=0.017  Score=51.50  Aligned_cols=71  Identities=21%  Similarity=0.263  Sum_probs=54.1

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      ++++|||.|..++.-.+.+..-|+. +|..|+|++... +.+...+    +..  ....+....+.++.++.||+|+-+
T Consensus       131 ~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~-e~~a~~l----~~~--~~~~v~a~~s~~~av~~aDiIvt~  202 (330)
T COG2423         131 STLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAA-EAFAARL----RKR--GGEAVGAADSAEEAVEGADIVVTA  202 (330)
T ss_pred             cEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHH-HHHHHHH----Hhh--cCccceeccCHHHHhhcCCEEEEe
Confidence            5899999999999999998888998 699999998653 4433222    111  122345668999999999999875

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.35  E-value=0.0074  Score=54.03  Aligned_cols=38  Identities=24%  Similarity=0.319  Sum_probs=34.1

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCc
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ  199 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~  199 (244)
                      ..|.+++|.|+|.|.+|..+|+.| ...|. ++..+|+..
T Consensus        20 ~~L~~~~VlIiG~GglGs~va~~L-a~aGvg~i~lvD~D~   58 (338)
T PRK12475         20 RKIREKHVLIVGAGALGAANAEAL-VRAGIGKLTIADRDY   58 (338)
T ss_pred             HhhcCCcEEEECCCHHHHHHHHHH-HHcCCCEEEEEcCCc
Confidence            568999999999999999999999 68998 788898864

>PRK06046 alanine dehydrogenase; Validated

Probab=96.34  E-value=0.016  Score=51.55  Aligned_cols=72  Identities=25%  Similarity=0.369  Sum_probs=49.1

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      -+++||+|.|.+|+..++.++...+. +|..|+|++.. .+++.+.+.+      .....+...++++++++ +|+|+.+
T Consensus       129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~-~~~~~~~~~~------~~~~~v~~~~~~~~~l~-aDiVv~a  200 (326)
T PRK06046        129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSS-AEKFVERMSS------VVGCDVTVAEDIEEACD-CDILVTT  200 (326)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHH-HHHHHHHHHh------hcCceEEEeCCHHHHhh-CCEEEEe
Confidence            35899999999999999988546677 57778988744 3343332210      01122334568999997 9999986


Q ss_pred             C
Q 026023          244 C  244 (244)
Q Consensus       244 ~  244 (244)
                      .
T Consensus       201 T  201 (326)
T PRK06046        201 T  201 (326)
T ss_pred             c
Confidence            3

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.33  E-value=0.0057  Score=53.90  Aligned_cols=40  Identities=20%  Similarity=0.311  Sum_probs=34.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHH
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE  204 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~  204 (244)
                      .+++|||+|+|++|+.+|+.| ...|.+|..|+|+.....+
T Consensus         3 ~~m~I~iiG~G~~G~~lA~~l-~~~G~~V~~~~r~~~~~~~   42 (308)
T PRK14619          3 QPKTIAILGAGAWGSTLAGLA-SANGHRVRVWSRRSGLSLA   42 (308)
T ss_pred             CCCEEEEECccHHHHHHHHHH-HHCCCEEEEEeCCCCCCHH
Confidence            456899999999999999998 7999999999998754433

>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2

Probab=96.32  E-value=0.017  Score=46.00  Aligned_cols=75  Identities=20%  Similarity=0.290  Sum_probs=50.1

Q ss_pred             CCCEEEEEc--CChHHHHHHHHHhccCCcEEEEEcCCcc--hHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023          164 KGQTVGVIG--AGRIGSAYARMMVEGFKMNLIYYDLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (244)
Q Consensus       164 ~g~tvgIvG--~G~IG~~vA~~la~afG~~V~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~  239 (244)
                      .|++|+++|  .+++..+++..+ ..||+++..+.|..-  +...+..+...+..... ...  +...++++|.++.+|+
T Consensus         1 ~gl~i~~vGD~~~rv~~Sl~~~~-~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~-g~~--i~~~~~~~e~l~~aDv   76 (158)
T PF00185_consen    1 KGLKIAYVGDGHNRVAHSLIELL-AKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKN-GGK--ITITDDIEEALKGADV   76 (158)
T ss_dssp             TTEEEEEESSTTSHHHHHHHHHH-HHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHH-TTE--EEEESSHHHHHTT-SE
T ss_pred             CCCEEEEECCCCChHHHHHHHHH-HHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHh-CCC--eEEEeCHHHhcCCCCE
Confidence            488999999  489999999997 899999999999872  22222221111111111 112  2334799999999999


Q ss_pred             EEE
Q 026023          240 VCT  242 (244)
Q Consensus       240 Vvl  242 (244)
                      |..
T Consensus        77 vy~   79 (158)
T PF00185_consen   77 VYT   79 (158)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            975

1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=96.31  E-value=0.01  Score=56.05  Aligned_cols=35  Identities=31%  Similarity=0.507  Sum_probs=31.6

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ++|||||.|..|..+|..+ ..-|..|..||+++..
T Consensus         8 ~~V~VIGaG~MG~gIA~~l-a~aG~~V~l~D~~~e~   42 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVA-AQAGHTVLLYDARAGA   42 (507)
T ss_pred             CEEEEECCCHHHHHHHHHH-HhCCCeEEEEeCCHHH
Confidence            5799999999999999998 4669999999999765

>PRK02102 ornithine carbamoyltransferase; Validated

Probab=96.31  E-value=0.062  Score=47.94  Aligned_cols=76  Identities=20%  Similarity=0.252  Sum_probs=51.3

Q ss_pred             cCCCEEEEEcCC--hHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          163 LKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       163 l~g~tvgIvG~G--~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      +.|++|+++|-+  ++...++..+ ..||++|..+.|..-...++..+..-...+..+   ..+...+++++.++.+|+|
T Consensus       153 l~g~~va~vGd~~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~ea~~~aDvv  228 (331)
T PRK02102        153 LKGLKLAYVGDGRNNMANSLMVGG-AKLGMDVRICAPKELWPEEELVALAREIAKETG---AKITITEDPEEAVKGADVI  228 (331)
T ss_pred             CCCCEEEEECCCcccHHHHHHHHH-HHcCCEEEEECCcccccCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCEE
Confidence            789999999997  8999999997 799999999998653322222211000011111   1233457899999999998


Q ss_pred             EE
Q 026023          241 CT  242 (244)
Q Consensus       241 vl  242 (244)
                      ..
T Consensus       229 yt  230 (331)
T PRK02102        229 YT  230 (331)
T ss_pred             EE
Confidence            75

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=96.28  E-value=0.0095  Score=55.00  Aligned_cols=34  Identities=18%  Similarity=0.358  Sum_probs=30.2

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .+|||+|+|.+|..+|..|++  |.+|++||+++..
T Consensus         7 mkI~vIGlGyvGlpmA~~la~--~~~V~g~D~~~~~   40 (425)
T PRK15182          7 VKIAIIGLGYVGLPLAVEFGK--SRQVVGFDVNKKR   40 (425)
T ss_pred             CeEEEECcCcchHHHHHHHhc--CCEEEEEeCCHHH
Confidence            579999999999999999843  6999999999755

>PRK03515 ornithine carbamoyltransferase subunit I; Provisional

Probab=96.27  E-value=0.076  Score=47.48  Aligned_cols=113  Identities=19%  Similarity=0.167  Sum_probs=68.5

Q ss_pred             HHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCC--hHHHHHH
Q 026023          104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG--RIGSAYA  181 (244)
Q Consensus       104 ~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G--~IG~~vA  181 (244)
                      .+.-.+|+|.|..+...-|+=-.+=.+.+.  +.                    +.+..+.|.+|+++|-+  ++..+++
T Consensus       117 ~a~~~~vPVINa~~~~~HPtQaLaDl~Ti~--e~--------------------~g~~~l~g~~ia~vGD~~~~v~~Sl~  174 (336)
T PRK03515        117 LAEYAGVPVWNGLTNEFHPTQLLADLLTMQ--EH--------------------LPGKAFNEMTLAYAGDARNNMGNSLL  174 (336)
T ss_pred             HHHhCCCCEEECCCCCCChHHHHHHHHHHH--HH--------------------hCCCCcCCCEEEEeCCCcCcHHHHHH
Confidence            344458999998765544443332223322  11                    01124789999999976  6899999


Q ss_pred             HHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       182 ~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      ..+ ..||+++..+.|..-...+++.+..-...+..+   ..+...+++++.++.+|+|..
T Consensus       175 ~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~i~~~~d~~ea~~~aDvvyt  231 (336)
T PRK03515        175 EAA-ALTGLDLRLVAPKACWPEAALVTECRALAQKNG---GNITLTEDIAEGVKGADFIYT  231 (336)
T ss_pred             HHH-HHcCCEEEEECCchhcCcHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCEEEe
Confidence            997 799999999998653211222110000011111   223455799999999999975

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=96.22  E-value=0.015  Score=50.64  Aligned_cols=74  Identities=20%  Similarity=0.192  Sum_probs=49.5

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC  241 (244)
Q Consensus       163 l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv  241 (244)
                      +.|+++.|+|.|..|+.++..| ...|+ +|..++|+... .+...+.++..    . ........+++.+.+.++|+||
T Consensus       123 ~~~k~vlvlGaGGaarai~~aL-~~~G~~~i~I~nRt~~k-a~~La~~~~~~----~-~~~~~~~~~~~~~~~~~~DiVI  195 (282)
T TIGR01809       123 LAGFRGLVIGAGGTSRAAVYAL-ASLGVTDITVINRNPDK-LSRLVDLGVQV----G-VITRLEGDSGGLAIEKAAEVLV  195 (282)
T ss_pred             cCCceEEEEcCcHHHHHHHHHH-HHcCCCeEEEEeCCHHH-HHHHHHHhhhc----C-cceeccchhhhhhcccCCCEEE
Confidence            6789999999999999999998 79998 69999998643 23333322110    0 0000111124556778899998


Q ss_pred             Ee
Q 026023          242 TL  243 (244)
Q Consensus       242 l~  243 (244)
                      .+
T Consensus       196 na  197 (282)
T TIGR01809       196 ST  197 (282)
T ss_pred             EC
Confidence            75

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=96.22  E-value=0.0085  Score=55.40  Aligned_cols=72  Identities=25%  Similarity=0.195  Sum_probs=48.3

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       163 l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      ..+++|.|+|+|.-|..+|+.| +..|++|.++|.++.+.....        .....+.+.+..-....+.+..+|+|+.
T Consensus         5 ~~~~kv~V~GLG~sG~a~a~~L-~~~G~~v~v~D~~~~~~~~~~--------~~~~~~~i~~~~g~~~~~~~~~~d~vV~   75 (448)
T COG0771           5 FQGKKVLVLGLGKSGLAAARFL-LKLGAEVTVSDDRPAPEGLAA--------QPLLLEGIEVELGSHDDEDLAEFDLVVK   75 (448)
T ss_pred             ccCCEEEEEecccccHHHHHHH-HHCCCeEEEEcCCCCccchhh--------hhhhccCceeecCccchhccccCCEEEE
Confidence            4499999999999999999999 899999999998776510000        0000111111111122278889999987


Q ss_pred             e
Q 026023          243 L  243 (244)
Q Consensus       243 ~  243 (244)
                      .
T Consensus        76 S   76 (448)
T COG0771          76 S   76 (448)
T ss_pred             C
Confidence            4

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=96.21  E-value=0.025  Score=50.26  Aligned_cols=77  Identities=17%  Similarity=0.249  Sum_probs=49.1

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC  241 (244)
Q Consensus       163 l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv  241 (244)
                      +..++|+|+|.|++|..+|..+ ..-|. .|..+|.++.....+..+.... . ........+....+. +-++.||+|+
T Consensus         4 ~~~~KI~IIGaG~vG~~ia~~l-a~~gl~~i~LvDi~~~~~~~~~ld~~~~-~-~~~~~~~~I~~~~d~-~~l~~aDiVI   79 (321)
T PTZ00082          4 IKRRKISLIGSGNIGGVMAYLI-VLKNLGDVVLFDIVKNIPQGKALDISHS-N-VIAGSNSKVIGTNNY-EDIAGSDVVI   79 (321)
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HhCCCCeEEEEeCCCchhhHHHHHHHhh-h-hccCCCeEEEECCCH-HHhCCCCEEE
Confidence            4557999999999999999987 56674 8999999876422222221111 0 001111223333566 4679999999


Q ss_pred             Ee
Q 026023          242 TL  243 (244)
Q Consensus       242 l~  243 (244)
                      ++
T Consensus        80 ~t   81 (321)
T PTZ00082         80 VT   81 (321)
T ss_pred             EC
Confidence            85

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=96.21  E-value=0.024  Score=50.86  Aligned_cols=73  Identities=18%  Similarity=0.347  Sum_probs=47.3

Q ss_pred             EEEEEcCChHHHHHHHHHhc-c------CCcEEEEEcCCc---chHHHHHHhhhhhhhhcCCCCCc-------cccccCC
Q 026023          167 TVGVIGAGRIGSAYARMMVE-G------FKMNLIYYDLYQ---ATRLEKFVTAYGQFLKANGEQPV-------TWKRASS  229 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~-a------fG~~V~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~  229 (244)
                      +|+|+|.|+-|.++|..|+. .      |+-+|..|.|..   .+...+..+.-     +.+...+       ......+
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~-----~~n~~ylpgi~Lp~~i~at~d   75 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTT-----HENVKYLPGIKLPANLVAVPD   75 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhc-----CCCccccCCCcCCCCeEEECC
Confidence            48999999999999999854 2      558999998843   22222222110     1111111       1223468


Q ss_pred             HHHHhhhCCEEEEeC
Q 026023          230 MDEVLREADVVCTLC  244 (244)
Q Consensus       230 l~ell~~sD~Vvl~~  244 (244)
                      ++++++.||+|++.+
T Consensus        76 l~eal~~ADiIIlAV   90 (342)
T TIGR03376        76 LVEAAKGADILVFVI   90 (342)
T ss_pred             HHHHHhcCCEEEEEC
Confidence            999999999999874

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK12562 ornithine carbamoyltransferase subunit F; Provisional

Probab=96.21  E-value=0.08  Score=47.31  Aligned_cols=114  Identities=16%  Similarity=0.138  Sum_probs=68.9

Q ss_pred             HHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCC--hHHHHH
Q 026023          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG--RIGSAY  180 (244)
Q Consensus       103 ~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G--~IG~~v  180 (244)
                      ..+.-.+|+|.|..+.+.-|+=-.+=.+.+.  +.                    +.+..+.|.+|+++|-+  ++...+
T Consensus       116 ~~a~~~~vPVINa~~~~~HPtQaLaDl~Ti~--e~--------------------~g~~~l~gl~va~vGD~~~~v~~S~  173 (334)
T PRK12562        116 TLAEYAGVPVWNGLTNEFHPTQLLADLLTMQ--EH--------------------LPGKAFNEMTLVYAGDARNNMGNSM  173 (334)
T ss_pred             HHHHhCCCCEEECCCCCCChHHHHHHHHHHH--HH--------------------hCCCCcCCcEEEEECCCCCCHHHHH
Confidence            3344458999998775544443332223322  11                    01123789999999976  789999


Q ss_pred             HHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       181 A~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      +..+ ..||++|..+.|..-...+++.+......+..+   ..+...+++++.++.+|+|..
T Consensus       174 ~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~~a~~~aDvvyt  231 (334)
T PRK12562        174 LEAA-ALTGLDLRLVAPQACWPEASLVAECSALAQKHG---GKITLTEDIAAGVKGADFIYT  231 (334)
T ss_pred             HHHH-HHcCCEEEEECCcccCCcHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCEEEE
Confidence            9997 789999999998652211222211000111111   123345799999999999975

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.20  E-value=0.011  Score=54.55  Aligned_cols=36  Identities=22%  Similarity=0.290  Sum_probs=33.6

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (244)
Q Consensus       163 l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~  199 (244)
                      +.|+++.|+|.|.+|..+|+.| ...|++|.++|+..
T Consensus         3 ~~~k~v~v~G~g~~G~s~a~~l-~~~G~~V~~~d~~~   38 (447)
T PRK02472          3 YQNKKVLVLGLAKSGYAAAKLL-HKLGANVTVNDGKP   38 (447)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHH-HHCCCEEEEEcCCC
Confidence            6789999999999999999998 89999999999765

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.19  E-value=0.046  Score=49.60  Aligned_cols=37  Identities=30%  Similarity=0.250  Sum_probs=33.7

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCC
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY  198 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~  198 (244)
                      ..+.+++|.|+|.|.+|..+++.| ...|. ++..+|+.
T Consensus       131 ~~l~~~~VlvvG~GG~Gs~ia~~L-a~~Gvg~i~lvD~d  168 (376)
T PRK08762        131 RRLLEARVLLIGAGGLGSPAALYL-AAAGVGTLGIVDHD  168 (376)
T ss_pred             HHHhcCcEEEECCCHHHHHHHHHH-HHcCCCeEEEEeCC
Confidence            458999999999999999999999 69999 79999986

>PRK14031 glutamate dehydrogenase; Provisional

Probab=96.18  E-value=0.0079  Score=55.53  Aligned_cols=36  Identities=19%  Similarity=0.189  Sum_probs=33.3

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcC
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDL  197 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~  197 (244)
                      .+|.|+||.|.|+|++|+..|+.| ..+|++|++++.
T Consensus       224 ~~l~g~rVaVQGfGNVG~~aA~~L-~e~GAkVVaVSD  259 (444)
T PRK14031        224 TDLKGKVCLVSGSGNVAQYTAEKV-LELGGKVVTMSD  259 (444)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEC
Confidence            369999999999999999999998 899999999666

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=96.18  E-value=0.019  Score=49.56  Aligned_cols=38  Identities=26%  Similarity=0.178  Sum_probs=33.7

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       163 l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ..+++++|+|.|.+|+.++..| ...|.+|..++|+...
T Consensus       115 ~~~k~vliiGaGg~g~aia~~L-~~~g~~v~v~~R~~~~  152 (270)
T TIGR00507       115 RPNQRVLIIGAGGAARAVALPL-LKADCNVIIANRTVSK  152 (270)
T ss_pred             ccCCEEEEEcCcHHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            4678999999999999999998 6789999999998643

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>TIGR03316 ygeW probable carbamoyltransferase YgeW

Probab=96.17  E-value=0.12  Score=46.60  Aligned_cols=77  Identities=21%  Similarity=0.235  Sum_probs=49.1

Q ss_pred             ccCCCEEEEEcCC--------hHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHH
Q 026023          162 LLKGQTVGVIGAG--------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV  233 (244)
Q Consensus       162 ~l~g~tvgIvG~G--------~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  233 (244)
                      .+.|++|+|+|.|        ++.++++..+ ..|||+|....|..-...++..+.--+..+..   ...+...+++++.
T Consensus       167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~---g~~~~~~~d~~ea  242 (357)
T TIGR03316       167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLM-TRFGMDVTLAHPEGYHLLPEVIEVAKKNAAEN---GGKFNIVNSMDEA  242 (357)
T ss_pred             ccCCCEEEEEeccccccCccchHHHHHHHHH-HHcCCEEEEECCCcccCCHHHHHHHHHHHHHc---CCeEEEEcCHHHH
Confidence            3789999999853        4557788887 78999999999874321122111000001111   1223345799999


Q ss_pred             hhhCCEEEE
Q 026023          234 LREADVVCT  242 (244)
Q Consensus       234 l~~sD~Vvl  242 (244)
                      ++.+|+|..
T Consensus       243 ~~~aDvvyt  251 (357)
T TIGR03316       243 FKDADIVYP  251 (357)
T ss_pred             hCCCCEEEE
Confidence            999999975

Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=96.16  E-value=0.015  Score=54.80  Aligned_cols=35  Identities=31%  Similarity=0.544  Sum_probs=31.7

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ++|||||.|..|..+|..+ ..-|.+|..||+++..
T Consensus         6 ~kV~VIGaG~MG~gIA~~l-a~aG~~V~l~d~~~e~   40 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVA-ASAGHQVLLYDIRAEA   40 (503)
T ss_pred             cEEEEECcCHHHHHHHHHH-HhCCCeEEEEeCCHHH
Confidence            5799999999999999998 5779999999999764

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=96.14  E-value=0.013  Score=53.27  Aligned_cols=73  Identities=18%  Similarity=0.204  Sum_probs=51.4

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCC-cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      ++|.|+|.|.||+.+|..| ..-| .+|+.-||+.... .+..+..+   .+.....+.+...+.+.+++++.|+|+.+
T Consensus         2 ~~ilviGaG~Vg~~va~~l-a~~~d~~V~iAdRs~~~~-~~i~~~~~---~~v~~~~vD~~d~~al~~li~~~d~VIn~   75 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKL-AQNGDGEVTIADRSKEKC-ARIAELIG---GKVEALQVDAADVDALVALIKDFDLVINA   75 (389)
T ss_pred             CcEEEECCchhHHHHHHHH-HhCCCceEEEEeCCHHHH-HHHHhhcc---ccceeEEecccChHHHHHHHhcCCEEEEe
Confidence            5799999999999999998 5777 8999999997552 22111100   01222334444556799999999999875

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=96.12  E-value=0.016  Score=50.06  Aligned_cols=65  Identities=23%  Similarity=0.287  Sum_probs=39.6

Q ss_pred             CEEEEEcCChHHHHHHHHHhccC-CcEEEEEc-CCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGF-KMNLIYYD-LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~af-G~~V~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      .+|||+|+|+||+.+++.+ ... ++++.++- +.....  .....+       .   .+...+.+++++-.+.|+|+.+
T Consensus         2 ~rVgIiG~G~iG~~~~~~l-~~~~~~~l~~v~~~~~~~~--~~~~~~-------~---~~~~~~~d~~~l~~~~DvVve~   68 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELL-EHDPDLRVDWVIVPEHSID--AVRRAL-------G---EAVRVVSSVDALPQRPDLVVEC   68 (265)
T ss_pred             cEEEEECCCHHHHHHHHHH-hhCCCceEEEEEEcCCCHH--HHhhhh-------c---cCCeeeCCHHHhccCCCEEEEC
Confidence            3799999999999999998 554 56654443 322211  100000       0   0123346788885568999876

>PRK00779 ornithine carbamoyltransferase; Provisional

Probab=96.11  E-value=0.056  Score=47.67  Aligned_cols=107  Identities=21%  Similarity=0.187  Sum_probs=68.7

Q ss_pred             HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcC-ChHHHHHHHH
Q 026023          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYARM  183 (244)
Q Consensus       105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~-G~IG~~vA~~  183 (244)
                      +...+++|.|..+.+.-|+=-.+=.+.+.  +.         -|             .+.|++|+++|= +++.+.++..
T Consensus       116 a~~~~vPVINag~~~~HPtQaL~Dl~Ti~--e~---------~g-------------~l~gl~i~~vGd~~~v~~Sl~~~  171 (304)
T PRK00779        116 AEYSTVPVINGLTDLSHPCQILADLLTIY--EH---------RG-------------SLKGLKVAWVGDGNNVANSLLLA  171 (304)
T ss_pred             HHhCCCCEEeCCCCCCChHHHHHHHHHHH--HH---------hC-------------CcCCcEEEEEeCCCccHHHHHHH
Confidence            44568999999876554443333333332  11         01             278899999998 7899999999


Q ss_pred             HhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       184 la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      + ..||++|....|..-...++..+.+   ....+   ..+...+++++.++.+|+|..
T Consensus       172 l-~~~g~~v~~~~P~~~~~~~~~~~~~---~~~~g---~~~~~~~d~~~a~~~aDvvy~  223 (304)
T PRK00779        172 A-ALLGFDLRVATPKGYEPDPEIVEKI---AKETG---ASIEVTHDPKEAVKGADVVYT  223 (304)
T ss_pred             H-HHcCCEEEEECCcccCCCHHHHHHH---HHHcC---CeEEEEcCHHHHhCCCCEEEe
Confidence            7 7999999999986532212221110   01111   123345799999999999875

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.11  E-value=0.02  Score=53.88  Aligned_cols=36  Identities=33%  Similarity=0.353  Sum_probs=33.4

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (244)
Q Consensus       163 l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~  199 (244)
                      +.+++++|+|+|.+|..+|+.| +..|.+|.++|...
T Consensus         5 ~~~~~i~v~G~G~sG~s~a~~L-~~~G~~v~~~D~~~   40 (498)
T PRK02006          5 LQGPMVLVLGLGESGLAMARWC-ARHGARLRVADTRE   40 (498)
T ss_pred             cCCCEEEEEeecHhHHHHHHHH-HHCCCEEEEEcCCC
Confidence            5688999999999999999998 89999999999765

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.08  E-value=0.014  Score=54.54  Aligned_cols=37  Identities=27%  Similarity=0.291  Sum_probs=33.5

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       163 l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      +.|++++|+|+|.-|+.+|+.| +..|++|.++|....
T Consensus         6 ~~~~~v~v~G~G~sG~~~~~~l-~~~g~~v~~~d~~~~   42 (468)
T PRK04690          6 LEGRRVALWGWGREGRAAYRAL-RAHLPAQALTLFCNA   42 (468)
T ss_pred             cCCCEEEEEccchhhHHHHHHH-HHcCCEEEEEcCCCc
Confidence            4689999999999999999998 899999999996543

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.08  E-value=0.016  Score=54.25  Aligned_cols=39  Identities=23%  Similarity=0.216  Sum_probs=35.2

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      ..+.+++|.|+|+|.+|+.+|+.| ...|++|.++|+...
T Consensus        11 ~~~~~~~v~v~G~G~sG~a~a~~L-~~~G~~V~~~D~~~~   49 (473)
T PRK00141         11 PQELSGRVLVAGAGVSGRGIAAML-SELGCDVVVADDNET   49 (473)
T ss_pred             ccccCCeEEEEccCHHHHHHHHHH-HHCCCEEEEECCChH
Confidence            457889999999999999999998 899999999998654

>PRK09414 glutamate dehydrogenase; Provisional

Probab=96.07  E-value=0.0092  Score=55.21  Aligned_cols=36  Identities=14%  Similarity=0.216  Sum_probs=32.9

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcC
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDL  197 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~  197 (244)
                      .++.|+||.|.|||++|+.+|+.| ..+|++|++++.
T Consensus       228 ~~l~g~rVaIqGfGnVG~~~A~~L-~~~GakVVavsD  263 (445)
T PRK09414        228 DSFEGKRVVVSGSGNVAIYAIEKA-QQLGAKVVTCSD  263 (445)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEc
Confidence            358999999999999999999998 899999999843

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=96.05  E-value=0.0096  Score=52.53  Aligned_cols=34  Identities=24%  Similarity=0.470  Sum_probs=30.7

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      .+|+|+|.|.||..+|.+| ...|.+|..+.|+..
T Consensus         6 m~I~IiG~GaiG~~lA~~L-~~~g~~V~~~~r~~~   39 (313)
T PRK06249          6 PRIGIIGTGAIGGFYGAML-ARAGFDVHFLLRSDY   39 (313)
T ss_pred             cEEEEECCCHHHHHHHHHH-HHCCCeEEEEEeCCH
Confidence            5799999999999999999 678999999999753

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=96.05  E-value=0.015  Score=47.97  Aligned_cols=38  Identities=18%  Similarity=0.207  Sum_probs=33.8

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCc
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ  199 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~  199 (244)
                      ..|.+++|.|+|.|.+|.++++.| -..|. ++..+|...
T Consensus        17 ~~L~~s~VlIiG~gglG~evak~L-a~~GVg~i~lvD~d~   55 (197)
T cd01492          17 KRLRSARILLIGLKGLGAEIAKNL-VLSGIGSLTILDDRT   55 (197)
T ss_pred             HHHHhCcEEEEcCCHHHHHHHHHH-HHcCCCEEEEEECCc
Confidence            568999999999999999999999 69999 588888764

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=96.04  E-value=0.015  Score=54.29  Aligned_cols=76  Identities=14%  Similarity=0.256  Sum_probs=47.9

Q ss_pred             CEEEEEcCChHHHHHHHHHhc-cCCcEEEEEcCCcchHHHHHH-------h-hhhhhhhcCCCCCccccccCCHHHHhhh
Q 026023          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFV-------T-AYGQFLKANGEQPVTWKRASSMDEVLRE  236 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~-afG~~V~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~l~ell~~  236 (244)
                      .+|+|+|+|.+|..+|-.||+ +.|.+|+++|..+.. .+..-       + ....+..+....  ......+..+.+++
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~-v~~l~~g~~~~~e~gl~ell~~~~~~--~l~~t~~~~~~i~~   78 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPR-IDAWNSDQLPIYEPGLDEVVKQCRGK--NLFFSTDVEKHVAE   78 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHH-HHHHHcCCCccCCCCHHHHHHHhhcC--CEEEEcCHHHHHhc
Confidence            479999999999999999853 357999999987654 11100       0 000001110000  12233567888999


Q ss_pred             CCEEEEeC
Q 026023          237 ADVVCTLC  244 (244)
Q Consensus       237 sD~Vvl~~  244 (244)
                      ||++++|+
T Consensus        79 advi~I~V   86 (473)
T PLN02353         79 ADIVFVSV   86 (473)
T ss_pred             CCEEEEEe
Confidence            99999985

>TIGR00658 orni_carb_tr ornithine carbamoyltransferase

Probab=96.04  E-value=0.099  Score=46.12  Aligned_cols=110  Identities=20%  Similarity=0.157  Sum_probs=68.1

Q ss_pred             HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcC-ChHHHHHHHH
Q 026023          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYARM  183 (244)
Q Consensus       105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~-G~IG~~vA~~  183 (244)
                      ++..+++|.|..+.+.-|+=-.+=.+.+.  +.+         |             .+.|.+|+++|= +++.++++..
T Consensus       112 a~~~~vPVINa~~~~~HPtQaL~Dl~Ti~--e~~---------g-------------~l~g~~v~~vGd~~~v~~Sl~~~  167 (304)
T TIGR00658       112 AKYASVPVINGLTDLFHPCQALADLLTII--EHF---------G-------------KLKGVKVVYVGDGNNVCNSLMLA  167 (304)
T ss_pred             HHhCCCCEEECCCCCCChHHHHHHHHHHH--HHh---------C-------------CCCCcEEEEEeCCCchHHHHHHH
Confidence            44457999999776554443333333332  110         1             278999999997 7899999999


Q ss_pred             HhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       184 la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      + ..||++|....|..-...++..+..-......   ...+...+++++.++.+|+|..
T Consensus       168 l-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~---g~~~~~~~d~~~a~~~aDvvy~  222 (304)
T TIGR00658       168 G-AKLGMDVVVATPEGYEPDADIVKKAQEIAKEN---GGSVELTHDPVEAVKGADVIYT  222 (304)
T ss_pred             H-HHcCCEEEEECCchhcCCHHHHHHHHHHHHHc---CCeEEEEcCHHHHhCCCCEEEE
Confidence            7 79999999999865322122111000000111   1123345799999999999975

Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.

>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed

Probab=96.04  E-value=0.12  Score=46.19  Aligned_cols=76  Identities=13%  Similarity=0.090  Sum_probs=48.0

Q ss_pred             c-CCCEEEEEcCC-------hHHHHHHHHHhccCCcEEEEEcC-CcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHH
Q 026023          163 L-KGQTVGVIGAG-------RIGSAYARMMVEGFKMNLIYYDL-YQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV  233 (244)
Q Consensus       163 l-~g~tvgIvG~G-------~IG~~vA~~la~afG~~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  233 (244)
                      + .|++|+|+|.|       ++...++..+ ..||++|....| ..-...++..+.--+..+..+   ..+...++++|.
T Consensus       166 ~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~ea  241 (335)
T PRK04523        166 TLRGKKYVLTWTYHPKPLNTAVANSALLIA-TRLGMDVTLLCPTPDYILDERYMDWAEQNAAESG---GSLTVSHDIDSA  241 (335)
T ss_pred             ccCCCEEEEEEeccCcccccHHHHHHHHHH-HHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcC---CeEEEEcCHHHH
Confidence            5 78999887644       7888999987 789999999998 322111111110000011111   223345799999


Q ss_pred             hhhCCEEEE
Q 026023          234 LREADVVCT  242 (244)
Q Consensus       234 l~~sD~Vvl  242 (244)
                      ++.+|+|..
T Consensus       242 ~~~aDvvy~  250 (335)
T PRK04523        242 YAGADVVYA  250 (335)
T ss_pred             hCCCCEEEe
Confidence            999999975

>PRK06223 malate dehydrogenase; Reviewed

Probab=96.03  E-value=0.032  Score=49.02  Aligned_cols=74  Identities=15%  Similarity=0.280  Sum_probs=44.6

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      ++|+|+|.|.+|..+|..+ ...|. +|..+|+..........+..... . ............+.+ -++.||+|+++
T Consensus         3 ~KI~VIGaG~vG~~ia~~l-a~~~~~ev~L~D~~~~~~~~~~~dl~~~~-~-~~~~~~~i~~~~d~~-~~~~aDiVii~   77 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLL-ALKELGDVVLFDIVEGVPQGKALDIAEAA-P-VEGFDTKITGTNDYE-DIAGSDVVVIT   77 (307)
T ss_pred             CEEEEECCCHHHHHHHHHH-HhCCCeEEEEEECCCchhHHHHHHHHhhh-h-hcCCCcEEEeCCCHH-HHCCCCEEEEC
Confidence            4899999999999999997 45443 99999996643211111111000 0 001111222234564 57999999986

>PRK01713 ornithine carbamoyltransferase; Provisional

Probab=96.03  E-value=0.11  Score=46.54  Aligned_cols=113  Identities=18%  Similarity=0.156  Sum_probs=67.8

Q ss_pred             HHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCC--hHHHHH
Q 026023          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG--RIGSAY  180 (244)
Q Consensus       103 ~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G--~IG~~v  180 (244)
                      ..+...+|+|.|..+.+.-|+=-.+=.+.+.  ..                     .+..+.|++|+++|=+  +...++
T Consensus       117 ~~a~~~~vPVINa~~~~~HPtQaL~Dl~Ti~--e~---------------------~g~~l~gl~ia~vGD~~~~v~~Sl  173 (334)
T PRK01713        117 ELAEYAGVPVFNGLTDEFHPTQMLADVLTMI--EN---------------------CDKPLSEISYVYIGDARNNMGNSL  173 (334)
T ss_pred             HHHHhCCCCEEECCCCCCChHHHHHHHHHHH--HH---------------------cCCCcCCcEEEEECCCccCHHHHH
Confidence            3344568999999775544432222222222  11                     0113789999999986  678888


Q ss_pred             HHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       181 A~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      +..+ ..||++|..+.|..-...++..+...+..+..   ...+...+++++.++.+|+|..
T Consensus       174 ~~~~-~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~---g~~~~~~~d~~~a~~~aDvVyt  231 (334)
T PRK01713        174 LLIG-AKLGMDVRICAPKALLPEASLVEMCEKFAKES---GARITVTDDIDKAVKGVDFVHT  231 (334)
T ss_pred             HHHH-HHcCCEEEEECCchhcCCHHHHHHHHHHHHHc---CCeEEEEcCHHHHhCCCCEEEE
Confidence            9997 78999999999864321121111000001111   1223445899999999999975

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=96.02  E-value=0.029  Score=47.29  Aligned_cols=75  Identities=20%  Similarity=0.225  Sum_probs=49.3

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcE---EEEEcCCc---chHH---HHHHhhhhhhhhcCCCCCccccccCCHH
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMN---LIYYDLYQ---ATRL---EKFVTAYGQFLKANGEQPVTWKRASSMD  231 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~---V~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~  231 (244)
                      .++.++++.|+|.|..|+.+|+.| ...|++   |..+||+.   ....   .+....+   .+......  . . .+|.
T Consensus        21 ~~l~~~rvlvlGAGgAg~aiA~~L-~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~l---a~~~~~~~--~-~-~~l~   92 (226)
T cd05311          21 KKIEEVKIVINGAGAAGIAIARLL-LAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEI---AKETNPEK--T-G-GTLK   92 (226)
T ss_pred             CCccCCEEEEECchHHHHHHHHHH-HHcCcCcceEEEEeCCCccccccchhhhHHHHHH---HHHhccCc--c-c-CCHH
Confidence            358889999999999999999998 788985   99999983   1111   0110111   11111111  1 1 2688


Q ss_pred             HHhhhCCEEEEe
Q 026023          232 EVLREADVVCTL  243 (244)
Q Consensus       232 ell~~sD~Vvl~  243 (244)
                      +.++++|+|+-.
T Consensus        93 ~~l~~~dvlIga  104 (226)
T cd05311          93 EALKGADVFIGV  104 (226)
T ss_pred             HHHhcCCEEEeC
Confidence            888999998864

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>TIGR00670 asp_carb_tr aspartate carbamoyltransferase

Probab=95.99  E-value=0.11  Score=45.79  Aligned_cols=72  Identities=22%  Similarity=0.358  Sum_probs=52.0

Q ss_pred             cCCCEEEEEcCC---hHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023          163 LKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (244)
Q Consensus       163 l~g~tvgIvG~G---~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~  239 (244)
                      +.|++|.++|-|   ++..+++..+ ..||++|....|..-..+++..+.    +...   ...+...+++++.++.+|+
T Consensus       148 l~g~~va~vGD~~~~~v~~Sl~~~~-a~~g~~v~~~~P~~~~~~~~~~~~----~~~~---G~~v~~~~d~~~a~~~aDv  219 (301)
T TIGR00670       148 LDGLKIALVGDLKYGRTVHSLAEAL-TRFGVEVYLISPEELRMPKEILEE----LKAK---GIKVRETESLEEVIDEADV  219 (301)
T ss_pred             CCCCEEEEEccCCCCcHHHHHHHHH-HHcCCEEEEECCccccCCHHHHHH----HHHc---CCEEEEECCHHHHhCCCCE
Confidence            789999999995   9999999997 799999999998754222222221    1111   1233345799999999999


Q ss_pred             EEE
Q 026023          240 VCT  242 (244)
Q Consensus       240 Vvl  242 (244)
                      |..
T Consensus       220 vyt  222 (301)
T TIGR00670       220 LYV  222 (301)
T ss_pred             EEE
Confidence            864

Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=95.99  E-value=0.021  Score=53.07  Aligned_cols=38  Identities=18%  Similarity=0.302  Sum_probs=34.2

Q ss_pred             cCCCEEEEEcCChHHHH-HHHHHhccCCcEEEEEcCCcch
Q 026023          163 LKGQTVGVIGAGRIGSA-YARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       163 l~g~tvgIvG~G~IG~~-vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ..++++.|+|+|.+|.. +|+.| +..|.+|.++|....+
T Consensus         5 ~~~~~v~viG~G~sG~s~~a~~L-~~~G~~V~~~D~~~~~   43 (461)
T PRK00421          5 RRIKRIHFVGIGGIGMSGLAEVL-LNLGYKVSGSDLKESA   43 (461)
T ss_pred             CCCCEEEEEEEchhhHHHHHHHH-HhCCCeEEEECCCCCh
Confidence            56789999999999999 79998 8999999999987654

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.98  E-value=0.03  Score=49.63  Aligned_cols=75  Identities=24%  Similarity=0.322  Sum_probs=46.0

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcC-CC-CCccccccCCHHHHh-hhCCEEEEe
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-GE-QPVTWKRASSMDEVL-READVVCTL  243 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~l~ell-~~sD~Vvl~  243 (244)
                      +|+|+|.|++|..+|..| ..-|.+|..++|+... .+. ...-+.-.... +. .........++.+.+ ..+|+|+++
T Consensus         2 kI~IiGaGa~G~ala~~L-~~~g~~V~l~~r~~~~-~~~-i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiia   78 (326)
T PRK14620          2 KISILGAGSFGTAIAIAL-SSKKISVNLWGRNHTT-FES-INTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILA   78 (326)
T ss_pred             EEEEECcCHHHHHHHHHH-HHCCCeEEEEecCHHH-HHH-HHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEE
Confidence            599999999999999998 6779999999997532 111 11000000000 00 011122335777776 589999987


Q ss_pred             C
Q 026023          244 C  244 (244)
Q Consensus       244 ~  244 (244)
                      +
T Consensus        79 v   79 (326)
T PRK14620         79 V   79 (326)
T ss_pred             e
Confidence            4

>PRK06199 ornithine cyclodeaminase; Validated

Probab=95.96  E-value=0.029  Score=50.98  Aligned_cols=74  Identities=22%  Similarity=0.308  Sum_probs=51.7

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCC-c-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFK-M-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG-~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      -+++||+|.|..|+.-++.++..+. . +|.+|+|++.. .+.|.+.+.+..   + ...++...++.++.+++||+|+.
T Consensus       155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~-a~~f~~~~~~~~---~-~~~~v~~~~s~~eav~~ADIVvt  229 (379)
T PRK06199        155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKS-LDSFATWVAETY---P-QITNVEVVDSIEEVVRGSDIVTY  229 (379)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHH-HHHHHHHHHHhc---C-CCceEEEeCCHHHHHcCCCEEEE
Confidence            4689999999999999998754564 4 89999999854 344444332110   0 00123445799999999999986


Q ss_pred             e
Q 026023          243 L  243 (244)
Q Consensus       243 ~  243 (244)
                      +
T Consensus       230 a  230 (379)
T PRK06199        230 C  230 (379)
T ss_pred             c
Confidence            5

>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein

Probab=95.91  E-value=0.012  Score=52.74  Aligned_cols=66  Identities=17%  Similarity=0.264  Sum_probs=45.4

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      ||||+|-|..|+.+++.+ +.+|.+|+.+|+++......+.+.+       -  .......+.+.++.+.||+|+.
T Consensus         1 ~igiiG~gql~~~l~~aa-~~lG~~v~~~d~~~~~p~~~~ad~~-------~--~~~~~d~~~i~~~a~~~dvit~   66 (352)
T TIGR01161         1 TVGILGGGQLGRMLALAA-RPLGIKVHVLDPDANSPAVQVADHV-------V--LAPFFDPAAIRELAESCDVITF   66 (352)
T ss_pred             CEEEECCCHHHHHHHHHH-HHcCCEEEEECCCCCCChhHhCcee-------E--eCCCCCHHHHHHHHhhCCEEEe
Confidence            599999999999999995 9999999999998754322211110       0  0011112237888899998864

Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=95.87  E-value=0.034  Score=45.75  Aligned_cols=73  Identities=19%  Similarity=0.219  Sum_probs=48.3

Q ss_pred             ccccCCCEEEEEcCCh-HHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccc----cCCHHHHh
Q 026023          160 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR----ASSMDEVL  234 (244)
Q Consensus       160 ~~~l~g~tvgIvG~G~-IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~ell  234 (244)
                      +.++.||++.|+|-+. +|+-+|.+| ..-|+.|..++.+.-..    +       .+..........    ..++.+.+
T Consensus        57 ~~~l~GK~vvVIGrS~iVGkPla~lL-~~~~AtVti~~~~~~~~----~-------~~~~~~~hs~t~~~~~~~~l~~~~  124 (197)
T cd01079          57 GNRLYGKTITIINRSEVVGRPLAALL-ANDGARVYSVDINGIQV----F-------TRGESIRHEKHHVTDEEAMTLDCL  124 (197)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHH-HHCCCEEEEEecCcccc----c-------ccccccccccccccchhhHHHHHh
Confidence            5689999999999998 599999999 78899999996432110    0       000000000000    01388999


Q ss_pred             hhCCEEEEeC
Q 026023          235 READVVCTLC  244 (244)
Q Consensus       235 ~~sD~Vvl~~  244 (244)
                      ++||+|+..+
T Consensus       125 ~~ADIVIsAv  134 (197)
T cd01079         125 SQSDVVITGV  134 (197)
T ss_pred             hhCCEEEEcc
Confidence            9999999864

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PRK11891 aspartate carbamoyltransferase; Provisional

Probab=95.85  E-value=0.12  Score=47.72  Aligned_cols=73  Identities=15%  Similarity=0.244  Sum_probs=51.2

Q ss_pred             ccCCCEEEEEcCC---hHHHHHHHHHhccC-CcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhC
Q 026023          162 LLKGQTVGVIGAG---RIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (244)
Q Consensus       162 ~l~g~tvgIvG~G---~IG~~vA~~la~af-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s  237 (244)
                      .+.|++|+++|-+   +...+++..+ ..| ||+|..+.|..-...+++.+.    +...   ...+...++++|.++.+
T Consensus       238 ~l~G~kIa~vGD~~~~rv~~Sl~~~l-a~~~G~~v~l~~P~~~~~~~~~~~~----~~~~---G~~v~~~~d~~eav~~A  309 (429)
T PRK11891        238 IVDGAHIALVGDLKYGRTVHSLVKLL-ALYRGLKFTLVSPPTLEMPAYIVEQ----ISRN---GHVIEQTDDLAAGLRGA  309 (429)
T ss_pred             CcCCCEEEEECcCCCChHHHHHHHHH-HHhcCCEEEEECCCccccCHHHHHH----HHhc---CCeEEEEcCHHHHhCCC
Confidence            3789999999994   8899999987 565 999999998654222232211    1111   12234457999999999


Q ss_pred             CEEEE
Q 026023          238 DVVCT  242 (244)
Q Consensus       238 D~Vvl  242 (244)
                      |+|..
T Consensus       310 DVVYt  314 (429)
T PRK11891        310 DVVYA  314 (429)
T ss_pred             CEEEE
Confidence            99975

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.81  E-value=0.026  Score=52.73  Aligned_cols=40  Identities=23%  Similarity=0.114  Sum_probs=35.4

Q ss_pred             ccccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       160 ~~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      +..+.+++|.|+|.|.+|.++|+.| +..|.+|.+++++..
T Consensus        11 ~~~~~~~~v~viG~G~~G~~~A~~L-~~~G~~V~~~d~~~~   50 (480)
T PRK01438         11 HSDWQGLRVVVAGLGVSGFAAADAL-LELGARVTVVDDGDD   50 (480)
T ss_pred             ccCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCch
Confidence            3457899999999999999999998 799999999997653

>PLN02948 phosphoribosylaminoimidazole carboxylase

Probab=95.80  E-value=0.019  Score=54.98  Aligned_cols=73  Identities=14%  Similarity=0.239  Sum_probs=50.1

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      ....+++|||+|-|..|+.+++.+ +.+|.+|+.+|+.+......+.+.+       -  ..+....+.+.++.+++|+|
T Consensus        18 ~~~~~k~IgIIGgGqlg~mla~aA-~~lG~~Vi~ld~~~~apa~~~AD~~-------~--v~~~~D~~~l~~~a~~~dvI   87 (577)
T PLN02948         18 HGVSETVVGVLGGGQLGRMLCQAA-SQMGIKVKVLDPLEDCPASSVAARH-------V--VGSFDDRAAVREFAKRCDVL   87 (577)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCCCCchhhhCcee-------e--eCCCCCHHHHHHHHHHCCEE
Confidence            357899999999999999999995 9999999999998754222211100       0  00111122366778889998


Q ss_pred             EEe
Q 026023          241 CTL  243 (244)
Q Consensus       241 vl~  243 (244)
                      +..
T Consensus        88 t~e   90 (577)
T PLN02948         88 TVE   90 (577)
T ss_pred             EEe
Confidence            753

>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate

Probab=95.80  E-value=0.016  Score=45.89  Aligned_cols=33  Identities=24%  Similarity=0.372  Sum_probs=28.3

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~  199 (244)
                      +|||-|||+||+.++|.+...-.++|.+++...
T Consensus         2 kVgINGfGRIGR~v~r~~~~~~~~evvaInd~~   34 (151)
T PF00044_consen    2 KVGINGFGRIGRLVLRAALDQPDIEVVAINDPA   34 (151)
T ss_dssp             EEEEESTSHHHHHHHHHHHTSTTEEEEEEEESS
T ss_pred             EEEEECCCcccHHHHHhhcccceEEEEEEeccc
Confidence            799999999999999998667778888887654

The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=95.79  E-value=0.013  Score=49.40  Aligned_cols=72  Identities=21%  Similarity=0.246  Sum_probs=46.9

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHH-hhhCCEEEEe
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVVCTL  243 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~sD~Vvl~  243 (244)
                      +++.|+|.|+.|..+|+.| ...|..|..+++.+....+..-+.++.    ... .......+.|.++ +.++|+++..
T Consensus         1 m~iiIiG~G~vG~~va~~L-~~~g~~Vv~Id~d~~~~~~~~~~~~~~----~~v-~gd~t~~~~L~~agi~~aD~vva~   73 (225)
T COG0569           1 MKIIIIGAGRVGRSVAREL-SEEGHNVVLIDRDEERVEEFLADELDT----HVV-IGDATDEDVLEEAGIDDADAVVAA   73 (225)
T ss_pred             CEEEEECCcHHHHHHHHHH-HhCCCceEEEEcCHHHHHHHhhhhcce----EEE-EecCCCHHHHHhcCCCcCCEEEEe
Confidence            4789999999999999999 899999999999876532211100100    000 0111223456666 7788888764

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.77  E-value=0.036  Score=49.63  Aligned_cols=75  Identities=19%  Similarity=0.182  Sum_probs=45.5

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCC-CC--CccccccCCHHHHhhhCCEEEE
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-EQ--PVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      .+|+|+|.|.+|..+|..| ..-| .|..|.+++.. .+. ....+.-..... ..  ........++.+.++.+|+|++
T Consensus         8 mkI~IiGaGa~G~alA~~L-a~~g-~v~l~~~~~~~-~~~-i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVil   83 (341)
T PRK12439          8 PKVVVLGGGSWGTTVASIC-ARRG-PTLQWVRSAET-ADD-INDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVM   83 (341)
T ss_pred             CeEEEECCCHHHHHHHHHH-HHCC-CEEEEeCCHHH-HHH-HHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEE
Confidence            4799999999999999998 5667 67777766533 111 111000000000 00  0112234688899999999998


Q ss_pred             eC
Q 026023          243 LC  244 (244)
Q Consensus       243 ~~  244 (244)
                      ++
T Consensus        84 av   85 (341)
T PRK12439         84 GV   85 (341)
T ss_pred             Ee
Confidence            74

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=95.76  E-value=0.017  Score=46.15  Aligned_cols=65  Identities=18%  Similarity=0.169  Sum_probs=46.4

Q ss_pred             EEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCC--CccccccCCHHHHhhhCCEEEEeC
Q 026023          168 VGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       168 vgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      |.|+| .|.+|+.+++.| ..-|.+|.++.|++.+..+  .         .+..  ...+...+++.+.++.+|.|+.++
T Consensus         1 I~V~GatG~vG~~l~~~L-~~~~~~V~~~~R~~~~~~~--~---------~~~~~~~~d~~d~~~~~~al~~~d~vi~~~   68 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQL-LRRGHEVTALVRSPSKAED--S---------PGVEIIQGDLFDPDSVKAALKGADAVIHAA   68 (183)
T ss_dssp             EEEETTTSHHHHHHHHHH-HHTTSEEEEEESSGGGHHH--C---------TTEEEEESCTTCHHHHHHHHTTSSEEEECC
T ss_pred             eEEECCCChHHHHHHHHH-HHCCCEEEEEecCchhccc--c---------cccccceeeehhhhhhhhhhhhcchhhhhh
Confidence            57899 599999999998 8999999999999875322  0         0111  112223345788899999998753

...

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=95.73  E-value=0.048  Score=48.08  Aligned_cols=75  Identities=19%  Similarity=0.292  Sum_probs=46.4

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      ++|+|+|.|.+|..+|-.+ ...|. +|..+|........+..+.+...  .............++++ +++||+|+++.
T Consensus         2 ~KV~VIGaG~vG~~iA~~l-a~~g~~~VvlvDi~~~l~~g~a~d~~~~~--~~~~~~~~i~~t~d~~~-~~~aDiVIita   77 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRL-AEKELADLVLLDVVEGIPQGKALDMYEAS--PVGGFDTKVTGTNNYAD-TANSDIVVITA   77 (305)
T ss_pred             CEEEEECcCHHHHHHHHHH-HHcCCCeEEEEeCCCChhHHHHHhhhhhh--hccCCCcEEEecCCHHH-hCCCCEEEEcC
Confidence            4799999999999999997 46554 89999996543221111111100  00001112223467777 79999999863

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.72  E-value=0.018  Score=52.89  Aligned_cols=35  Identities=29%  Similarity=0.259  Sum_probs=32.0

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      .++|.|+|+|.+|..+|+.| +..|.+|.++|+++.
T Consensus         3 ~~~i~iiGlG~~G~slA~~l-~~~G~~V~g~D~~~~   37 (418)
T PRK00683          3 LQRVVVLGLGVTGKSIARFL-AQKGVYVIGVDKSLE   37 (418)
T ss_pred             CCeEEEEEECHHHHHHHHHH-HHCCCEEEEEeCCcc
Confidence            36899999999999999998 899999999998764

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=95.64  E-value=0.055  Score=45.53  Aligned_cols=45  Identities=11%  Similarity=0.022  Sum_probs=38.5

Q ss_pred             ccccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHH
Q 026023          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK  205 (244)
Q Consensus       160 ~~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~  205 (244)
                      ...+.|++|.|||.|.+|.+=++.| ..+|++|..++|...++..+
T Consensus        20 ~l~~~~~~VLVVGGG~VA~RK~~~L-l~~gA~VtVVap~i~~el~~   64 (223)
T PRK05562         20 SLLSNKIKVLIIGGGKAAFIKGKTF-LKKGCYVYILSKKFSKEFLD   64 (223)
T ss_pred             EEECCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEcCCCCHHHHH
Confidence            3567899999999999999988887 78999999999988765444

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=95.62  E-value=0.021  Score=51.17  Aligned_cols=37  Identities=30%  Similarity=0.396  Sum_probs=33.7

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCC
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY  198 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~  198 (244)
                      ..|..++|.|+|.|.+|..+|+.| ...|. ++..+|+.
T Consensus        20 ~~L~~~~VlVvG~GglGs~va~~L-a~aGvg~i~lvD~D   57 (339)
T PRK07688         20 QKLREKHVLIIGAGALGTANAEML-VRAGVGKVTIVDRD   57 (339)
T ss_pred             HHhcCCcEEEECCCHHHHHHHHHH-HHcCCCeEEEEeCC
Confidence            468999999999999999999999 58899 89999985

>PRK11579 putative oxidoreductase; Provisional

Probab=95.61  E-value=0.052  Score=48.51  Aligned_cols=64  Identities=16%  Similarity=0.161  Sum_probs=41.2

Q ss_pred             CEEEEEcCChHHHH-HHHHHhccCCcEEEE-EcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--hCCEEE
Q 026023          166 QTVGVIGAGRIGSA-YARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVVC  241 (244)
Q Consensus       166 ~tvgIvG~G~IG~~-vA~~la~afG~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sD~Vv  241 (244)
                      -++||||+|.||+. .+..+.+.-++++.+ +|+++... .+   .|           .....+.+++++|+  +.|+|+
T Consensus         5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~-~~---~~-----------~~~~~~~~~~ell~~~~vD~V~   69 (346)
T PRK11579          5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKV-KA---DW-----------PTVTVVSEPQHLFNDPNIDLIV   69 (346)
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHH-Hh---hC-----------CCCceeCCHHHHhcCCCCCEEE
Confidence            38999999999985 566553444788775 55554321 11   11           01223579999996  469999


Q ss_pred             EeC
Q 026023          242 TLC  244 (244)
Q Consensus       242 l~~  244 (244)
                      +++
T Consensus        70 I~t   72 (346)
T PRK11579         70 IPT   72 (346)
T ss_pred             EcC
Confidence            864

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=95.58  E-value=0.032  Score=50.52  Aligned_cols=66  Identities=21%  Similarity=0.256  Sum_probs=51.5

Q ss_pred             cCCCEEEEEcCC----------hHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHH
Q 026023          163 LKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE  232 (244)
Q Consensus       163 l~g~tvgIvG~G----------~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e  232 (244)
                      |.|||+||+|+-          .-...++++| +..|++|.+|||-..+....   .         ..  ......++++
T Consensus       308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L-~~~Ga~V~aYDP~a~~~~~~---~---------~~--~~~~~~~~~~  372 (414)
T COG1004         308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRL-QEKGAEVIAYDPVAMENAFR---N---------FP--DVELESDAEE  372 (414)
T ss_pred             CCCcEEEEEEEeecCCCccchhchHHHHHHHH-HHCCCEEEEECchhhHHHHh---c---------CC--CceEeCCHHH
Confidence            899999999984          4567899999 89999999999976542111   1         01  2345689999


Q ss_pred             HhhhCCEEEEe
Q 026023          233 VLREADVVCTL  243 (244)
Q Consensus       233 ll~~sD~Vvl~  243 (244)
                      +++.||.+++.
T Consensus       373 ~~~~aDaivi~  383 (414)
T COG1004         373 ALKGADAIVIN  383 (414)
T ss_pred             HHhhCCEEEEe
Confidence            99999999985

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.57  E-value=0.034  Score=51.70  Aligned_cols=38  Identities=34%  Similarity=0.363  Sum_probs=34.5

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      .+.|++|.|+|+|.+|..+|+.| +..|.+|.++|....
T Consensus         6 ~~~~~~i~viG~G~~G~~~a~~l-~~~G~~v~~~D~~~~   43 (460)
T PRK01390          6 GFAGKTVAVFGLGGSGLATARAL-VAGGAEVIAWDDNPA   43 (460)
T ss_pred             ccCCCEEEEEeecHhHHHHHHHH-HHCCCEEEEECCChh
Confidence            36789999999999999999998 899999999997644

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=95.56  E-value=0.05  Score=47.91  Aligned_cols=73  Identities=25%  Similarity=0.352  Sum_probs=44.6

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCc--EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      ++|+|+|.|.+|+.+|..| ...|.  +|..+|+..... +.....+........ ..... ...+. +.++.||+|+++
T Consensus         1 ~kI~IIGaG~vG~~~a~~l-~~~g~~~ei~l~D~~~~~~-~~~a~dL~~~~~~~~-~~~~i-~~~~~-~~l~~aDIVIit   75 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSL-VNQGIADELVLIDINEEKA-EGEALDLEDALAFLP-SPVKI-KAGDY-SDCKDADIVVIT   75 (306)
T ss_pred             CEEEEECCCHHHHHHHHHH-HhcCCCCEEEEEeCCcchh-hHhHhhHHHHhhccC-CCeEE-EcCCH-HHhCCCCEEEEc
Confidence            4799999999999999998 67784  799999976542 211111100000000 01111 22344 457999999986

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=95.53  E-value=0.05  Score=47.01  Aligned_cols=71  Identities=20%  Similarity=0.324  Sum_probs=42.5

Q ss_pred             EEEEEc-CChHHHHHHHHHhccCCcEEEE-EcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          167 TVGVIG-AGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       167 tvgIvG-~G~IG~~vA~~la~afG~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      +|+|+| +|++|+.+++.+...=++++.+ +|+...+......   +..   .+....++..+.+++++...+|+|+.+
T Consensus         3 kV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~---~~~---~~~~~~gv~~~~d~~~l~~~~DvVIdf   75 (266)
T TIGR00036         3 KVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDA---GEL---AGIGKVGVPVTDDLEAVETDPDVLIDF   75 (266)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCH---HHh---cCcCcCCceeeCCHHHhcCCCCEEEEC
Confidence            799999 7999999999974456888666 5533221100000   000   011112233447899986678999864

>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]

Probab=95.51  E-value=0.03  Score=49.49  Aligned_cols=39  Identities=21%  Similarity=0.219  Sum_probs=30.7

Q ss_pred             CEEEEEcCChHHHHHHHHHhccC--CcEEEEEcCCcchHHHH
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGF--KMNLIYYDLYQATRLEK  205 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~af--G~~V~~~~~~~~~~~~~  205 (244)
                      -+|||=|||+||+.++|.+ ..-  .|+|.+++....++...
T Consensus         2 ikV~INGfGrIGR~v~ra~-~~~~~dieVVaInd~t~~~~~A   42 (335)
T COG0057           2 IKVAINGFGRIGRLVARAA-LERDGDIEVVAINDLTDPDYLA   42 (335)
T ss_pred             cEEEEecCcHHHHHHHHHH-HhCCCCeEEEEEecCCCHHHHH
Confidence            3799999999999999997 554  49999999854443333

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.51  E-value=0.071  Score=48.23  Aligned_cols=75  Identities=23%  Similarity=0.365  Sum_probs=48.8

Q ss_pred             CCEEEEEcCChHHHHHHHHHhcc------CCcEEEEEcCCcch---HHHHHHhhhhhhhhcCCCCCc-------cccccC
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEG------FKMNLIYYDLYQAT---RLEKFVTAYGQFLKANGEQPV-------TWKRAS  228 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~a------fG~~V~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-------~~~~~~  228 (244)
                      ..+|+|+|.|+-|.++|..|+..      ||-+|..|.|...-   ...+..+.     .+.+..++       .+....
T Consensus        11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~-----~~~N~~ylp~~~Lp~ni~~ts   85 (365)
T PTZ00345         11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINT-----KHENVKYLPGIKLPDNIVAVS   85 (365)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHh-----cCCCcccCCCCcCCCceEEec
Confidence            35899999999999999998533      45799999887631   11111111     01111111       222346


Q ss_pred             CHHHHhhhCCEEEEeC
Q 026023          229 SMDEVLREADVVCTLC  244 (244)
Q Consensus       229 ~l~ell~~sD~Vvl~~  244 (244)
                      ++.+.++.||+|++.+
T Consensus        86 dl~eav~~aDiIvlAV  101 (365)
T PTZ00345         86 DLKEAVEDADLLIFVI  101 (365)
T ss_pred             CHHHHHhcCCEEEEEc
Confidence            8999999999999864

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=95.48  E-value=0.037  Score=50.91  Aligned_cols=69  Identities=16%  Similarity=0.158  Sum_probs=51.0

Q ss_pred             ccccCCCEEEEEcC----------ChHHHHHHHHHhccCC-cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccC
Q 026023          160 GNLLKGQTVGVIGA----------GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS  228 (244)
Q Consensus       160 ~~~l~g~tvgIvG~----------G~IG~~vA~~la~afG-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (244)
                      +.++.|++|+|+|+          ..-+..+++.| ...| ++|.+|||........+              . ......
T Consensus       315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L-~~~gg~~v~~~DP~~~~~~~~~--------------~-~~~~~~  378 (415)
T PRK11064        315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELI-AQWHSGETLVVEPNIHQLPKKL--------------D-GLVTLV  378 (415)
T ss_pred             ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHH-HhcCCcEEEEECCCCCchhhhc--------------c-CceeeC
Confidence            34688999999998          56788999999 7886 99999999854311100              0 011236


Q ss_pred             CHHHHhhhCCEEEEeC
Q 026023          229 SMDEVLREADVVCTLC  244 (244)
Q Consensus       229 ~l~ell~~sD~Vvl~~  244 (244)
                      +++|.++.||.|+++.
T Consensus       379 ~~~~~~~~ad~vvi~t  394 (415)
T PRK11064        379 SLDEALATADVLVMLV  394 (415)
T ss_pred             CHHHHHhCCCEEEECC
Confidence            8999999999999863

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=95.47  E-value=0.019  Score=44.72  Aligned_cols=72  Identities=22%  Similarity=0.319  Sum_probs=44.4

Q ss_pred             EEEEEcC-ChHHHHHHHHHhccCC--cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          167 TVGVIGA-GRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       167 tvgIvG~-G~IG~~vA~~la~afG--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      +|+|+|. |++|+.+|-.| ..-+  -++..+|+..........| +.......   .....-..+..+.+++||+|++.
T Consensus         2 KV~IiGa~G~VG~~~a~~l-~~~~l~~ei~L~D~~~~~~~g~a~D-l~~~~~~~---~~~~~i~~~~~~~~~~aDivvit   76 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLL-AQQGLADEIVLIDINEDKAEGEALD-LSHASAPL---PSPVRITSGDYEALKDADIVVIT   76 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHH-HHTTTSSEEEEEESSHHHHHHHHHH-HHHHHHGS---TEEEEEEESSGGGGTTESEEEET
T ss_pred             EEEEECCCChHHHHHHHHH-HhCCCCCceEEeccCcccceeeehh-hhhhhhhc---ccccccccccccccccccEEEEe
Confidence            7999999 99999998876 3434  4799999985432111111 00000000   01112223678889999999985

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=95.46  E-value=0.077  Score=44.26  Aligned_cols=43  Identities=21%  Similarity=0.224  Sum_probs=38.3

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHH
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE  204 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~  204 (244)
                      -++.|++|.|+|-|.+|.+=++.| ...|++|+.+++...++..
T Consensus         8 ~~l~~k~VlvvGgG~va~rKa~~l-l~~ga~v~Vvs~~~~~el~   50 (210)
T COG1648           8 LDLEGKKVLVVGGGSVALRKARLL-LKAGADVTVVSPEFEPELK   50 (210)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHH-HhcCCEEEEEcCCccHHHH
Confidence            469999999999999999999999 8999999999998844433

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.45  E-value=0.061  Score=49.75  Aligned_cols=38  Identities=16%  Similarity=0.220  Sum_probs=34.4

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       163 l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +.++++.|+|.|.+|..+|+.| ...|.+|.++|.....
T Consensus         3 ~~~~~~~v~G~g~~G~~~a~~l-~~~g~~v~~~d~~~~~   40 (445)
T PRK04308          3 FQNKKILVAGLGGTGISMIAYL-RKNGAEVAAYDAELKP   40 (445)
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCCCc
Confidence            5689999999999999999998 8999999999987653

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.43  E-value=0.02  Score=52.90  Aligned_cols=68  Identities=15%  Similarity=0.260  Sum_probs=45.5

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCC--ccccccCCHHHH-hhhCCEEEEe
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--VTWKRASSMDEV-LREADVVCTL  243 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~el-l~~sD~Vvl~  243 (244)
                      ++.|+|+|++|+.+++.| ...|.+|.++++++... +...+..       +...  ........++++ +.++|.|+++
T Consensus         2 ~viIiG~G~ig~~~a~~L-~~~g~~v~vid~~~~~~-~~~~~~~-------~~~~~~gd~~~~~~l~~~~~~~a~~vi~~   72 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENL-SGENNDVTVIDTDEERL-RRLQDRL-------DVRTVVGNGSSPDVLREAGAEDADLLIAV   72 (453)
T ss_pred             EEEEECCCHHHHHHHHHH-HhCCCcEEEEECCHHHH-HHHHhhc-------CEEEEEeCCCCHHHHHHcCCCcCCEEEEe
Confidence            689999999999999998 88999999999987542 2211100       0000  011122346666 7889988875

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=95.42  E-value=0.048  Score=50.02  Aligned_cols=65  Identities=22%  Similarity=0.273  Sum_probs=50.9

Q ss_pred             ccCCCEEEEEcC----------ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHH
Q 026023          162 LLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD  231 (244)
Q Consensus       162 ~l~g~tvgIvG~----------G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  231 (244)
                      ++.|++|+|+|+          ..-...+++.| ...|++|.+|||...+....   .            .  ....+++
T Consensus       310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L-~~~g~~v~~~DP~~~~~~~~---~------------~--~~~~~~~  371 (411)
T TIGR03026       310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELL-KEKGAKVKAYDPLVPEEEVK---G------------L--PLIDDLE  371 (411)
T ss_pred             cccCCEEEEEeeEecCCCCccccChHHHHHHHH-HhCCCEEEEECCCCChhhhh---h------------c--ccCCCHH
Confidence            479999999998          45788999999 89999999999986542111   0            0  1246899


Q ss_pred             HHhhhCCEEEEeC
Q 026023          232 EVLREADVVCTLC  244 (244)
Q Consensus       232 ell~~sD~Vvl~~  244 (244)
                      +.++.||.|+++.
T Consensus       372 ~~~~~ad~~v~~t  384 (411)
T TIGR03026       372 EALKGADALVILT  384 (411)
T ss_pred             HHHhCCCEEEEec
Confidence            9999999999873

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PLN02527 aspartate carbamoyltransferase

Probab=95.36  E-value=0.27  Score=43.39  Aligned_cols=72  Identities=21%  Similarity=0.374  Sum_probs=49.6

Q ss_pred             cCCCEEEEEcCC---hHHHHHHHHHhccC-CcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCC
Q 026023          163 LKGQTVGVIGAG---RIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (244)
Q Consensus       163 l~g~tvgIvG~G---~IG~~vA~~la~af-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (244)
                      +.|.+|+++|-+   +...+++..+ ..| |++|....|..-...+++.+.    +...   ...+...+++++.++.+|
T Consensus       149 l~g~kva~vGD~~~~rv~~Sl~~~~-~~~~g~~v~~~~P~~~~~~~~~~~~----~~~~---g~~~~~~~d~~~a~~~aD  220 (306)
T PLN02527        149 LDGIKVGLVGDLANGRTVRSLAYLL-AKYEDVKIYFVAPDVVKMKDDIKDY----LTSK---GVEWEESSDLMEVASKCD  220 (306)
T ss_pred             cCCCEEEEECCCCCChhHHHHHHHH-HhcCCCEEEEECCCccCCCHHHHHH----HHHc---CCEEEEEcCHHHHhCCCC
Confidence            789999999975   6889999987 566 999999998653212222211    1111   122334579999999999


Q ss_pred             EEEE
Q 026023          239 VVCT  242 (244)
Q Consensus       239 ~Vvl  242 (244)
                      +|..
T Consensus       221 vvyt  224 (306)
T PLN02527        221 VLYQ  224 (306)
T ss_pred             EEEE
Confidence            9875

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=95.35  E-value=0.017  Score=45.00  Aligned_cols=73  Identities=21%  Similarity=0.206  Sum_probs=44.2

Q ss_pred             EEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCC-CCCcccc-ccCCHHHHhhhCCEEEEeC
Q 026023          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-EQPVTWK-RASSMDEVLREADVVCTLC  244 (244)
Q Consensus       168 vgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~l~ell~~sD~Vvl~~  244 (244)
                      |.|+|.|.||..+|-+| +.-|.+|..++|+.+.  +. ....|-...... ....... ...+..+-....|+|++++
T Consensus         1 I~I~G~GaiG~~~a~~L-~~~g~~V~l~~r~~~~--~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~v   75 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARL-AQAGHDVTLVSRSPRL--EA-IKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAV   75 (151)
T ss_dssp             EEEESTSHHHHHHHHHH-HHTTCEEEEEESHHHH--HH-HHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-S
T ss_pred             CEEECcCHHHHHHHHHH-HHCCCceEEEEccccH--Hh-hhheeEEEEecccceecccccccCcchhccCCCcEEEEEe
Confidence            68999999999999999 6799999999998722  22 111111111111 1111111 1112246788899999875

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK07806 short chain dehydrogenase; Provisional

Probab=95.35  E-value=0.053  Score=45.46  Aligned_cols=37  Identities=27%  Similarity=0.374  Sum_probs=32.6

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       163 l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      +.|+++.|.|. |.||+.+++.| ..-|.+|++++|+..
T Consensus         4 ~~~k~vlItGasggiG~~l~~~l-~~~G~~V~~~~r~~~   41 (248)
T PRK07806          4 LPGKTALVTGSSRGIGADTAKIL-AGAGAHVVVNYRQKA   41 (248)
T ss_pred             CCCcEEEEECCCCcHHHHHHHHH-HHCCCEEEEEeCCch
Confidence            67899999996 89999999998 688999999988754

>PRK14030 glutamate dehydrogenase; Provisional

Probab=95.35  E-value=0.026  Score=52.18  Aligned_cols=38  Identities=24%  Similarity=0.303  Sum_probs=34.4

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEE--------EcCCc
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY--------YDLYQ  199 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~--------~~~~~  199 (244)
                      .++.|+||.|=|+|++|+..|+.| ..+|++|++        |++..
T Consensus       224 ~~l~g~~vaIQGfGnVG~~aA~~L-~e~GakvVavSD~~G~i~d~~G  269 (445)
T PRK14030        224 IDIKGKTVAISGFGNVAWGAATKA-TELGAKVVTISGPDGYIYDPDG  269 (445)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCCceEECCCC
Confidence            358999999999999999999998 899999999        77654

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.34  E-value=0.052  Score=50.24  Aligned_cols=35  Identities=17%  Similarity=0.237  Sum_probs=31.7

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      +-+++|+|+|.+|..+|+.| +..|.+|.++|....
T Consensus         6 ~~~~~v~G~G~sG~s~a~~L-~~~G~~v~~~D~~~~   40 (448)
T PRK03803          6 DGLHIVVGLGKTGLSVVRFL-ARQGIPFAVMDSREQ   40 (448)
T ss_pred             CCeEEEEeecHhHHHHHHHH-HhCCCeEEEEeCCCC
Confidence            45899999999999999998 899999999998653

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=95.33  E-value=0.049  Score=45.89  Aligned_cols=38  Identities=32%  Similarity=0.313  Sum_probs=33.1

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCc
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ  199 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~  199 (244)
                      ..|.+++|.|+|.|.+|.++|+.| ...|. ++..+|...
T Consensus        17 ~~L~~~~VlivG~GglGs~va~~L-a~~Gvg~i~lvD~D~   55 (228)
T cd00757          17 EKLKNARVLVVGAGGLGSPAAEYL-AAAGVGKLGLVDDDV   55 (228)
T ss_pred             HHHhCCcEEEECCCHHHHHHHHHH-HHcCCCEEEEEcCCE
Confidence            468999999999999999999999 68899 688887654

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=95.32  E-value=0.069  Score=46.86  Aligned_cols=72  Identities=15%  Similarity=0.240  Sum_probs=42.8

Q ss_pred             EEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          168 VGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       168 vgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      |+|+|.|.+|..+|..+ ...|. +|..+|..+........+... ... ............+.+ -++.||+|+++
T Consensus         1 I~IIGaG~vG~~ia~~l-a~~~l~eV~L~Di~e~~~~g~~~dl~~-~~~-~~~~~~~I~~t~d~~-~l~dADiVIit   73 (300)
T cd01339           1 ISIIGAGNVGATLAQLL-ALKELGDVVLLDIVEGLPQGKALDISQ-AAP-ILGSDTKVTGTNDYE-DIAGSDVVVIT   73 (300)
T ss_pred             CEEECCCHHHHHHHHHH-HhCCCcEEEEEeCCCcHHHHHHHHHHH-hhh-hcCCCeEEEEcCCHH-HhCCCCEEEEe
Confidence            68999999999999987 44444 999999986431111111110 000 011112233334555 48999999985

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK02255 putrescine carbamoyltransferase; Provisional

Probab=95.31  E-value=0.29  Score=43.84  Aligned_cols=77  Identities=14%  Similarity=0.157  Sum_probs=51.3

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      .+.|++|+++|= .++...++..+ ..||++|..+.|..-...+++.+..-......   ...+...+++++.++.+|+|
T Consensus       151 ~l~glkv~~vGD~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~---g~~~~~~~d~~eav~~aDvv  226 (338)
T PRK02255        151 KLEDCKVVFVGDATQVCVSLMFIA-TKMGMDFVHFGPKGYQLPEEHLAIAEENCEVS---GGSVLVTDDVDEAVKDADFV  226 (338)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHH-HhCCCEEEEECCCccccCHHHHHHHHHHHHhc---CCeEEEEcCHHHHhCCCCEE
Confidence            488999999997 68888989997 79999999999874321122211100000001   11233457999999999999


Q ss_pred             EE
Q 026023          241 CT  242 (244)
Q Consensus       241 vl  242 (244)
                      ..
T Consensus       227 y~  228 (338)
T PRK02255        227 YT  228 (338)
T ss_pred             EE
Confidence            75

>PRK08818 prephenate dehydrogenase; Provisional

Probab=95.26  E-value=0.03  Score=50.69  Aligned_cols=36  Identities=25%  Similarity=0.430  Sum_probs=30.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ  199 (244)
Q Consensus       164 ~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~  199 (244)
                      ...||+|||+ |.||+.+|+.|.+.+|.+|+++|+..
T Consensus         3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d   39 (370)
T PRK08818          3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPAD   39 (370)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence            4569999999 99999999999324699999999853

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=95.25  E-value=0.056  Score=45.10  Aligned_cols=37  Identities=35%  Similarity=0.451  Sum_probs=32.9

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCC
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY  198 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~  198 (244)
                      ..|.+++|+|+|.|.+|..+|+.| ...|. ++..+|..
T Consensus        24 ~~L~~~~V~ViG~GglGs~ia~~L-a~~Gvg~i~lvD~D   61 (212)
T PRK08644         24 EKLKKAKVGIAGAGGLGSNIAVAL-ARSGVGNLKLVDFD   61 (212)
T ss_pred             HHHhCCCEEEECcCHHHHHHHHHH-HHcCCCeEEEEeCC
Confidence            468999999999999999999999 57898 48888887

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.23  E-value=0.055  Score=50.38  Aligned_cols=34  Identities=29%  Similarity=0.548  Sum_probs=30.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~  199 (244)
                      .|++|+|+|+|.-|+++++.| +. |++|..+|...
T Consensus         5 ~~~~v~v~G~G~sG~a~~~~L-~~-g~~v~v~D~~~   38 (454)
T PRK01368          5 TKQKIGVFGLGKTGISVYEEL-QN-KYDVIVYDDLK   38 (454)
T ss_pred             CCCEEEEEeecHHHHHHHHHH-hC-CCEEEEECCCC
Confidence            578999999999999999999 65 99999999654

>PRK06114 short chain dehydrogenase; Provisional

Probab=95.21  E-value=0.062  Score=45.40  Aligned_cols=39  Identities=26%  Similarity=0.280  Sum_probs=33.5

Q ss_pred             ccCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .+.|+++.|.| .|.||+.+|+.| ...|++|+..+|+...
T Consensus         5 ~~~~k~~lVtG~s~gIG~~ia~~l-~~~G~~v~~~~r~~~~   44 (254)
T PRK06114          5 DLDGQVAFVTGAGSGIGQRIAIGL-AQAGADVALFDLRTDD   44 (254)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCcch
Confidence            47899999997 568999999999 6899999999987543

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=95.17  E-value=0.097  Score=46.35  Aligned_cols=72  Identities=15%  Similarity=0.165  Sum_probs=44.2

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCc--EEEEEcCCcchHHHHHHhhhhhhhhcCCCCC-ccccccCCHHHHhhhCCEEEE
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQP-VTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      .+|+|+|.|+||..+|-.| ...|.  ++..+|...........|.-    ....... ..+....+.++ ++.||+|++
T Consensus         4 ~Ki~IiGaG~VG~~~a~~l-~~~~~~~el~LiD~~~~~~~g~a~Dl~----~~~~~~~~~~v~~~~dy~~-~~~adivvi   77 (312)
T cd05293           4 NKVTVVGVGQVGMACAISI-LAKGLADELVLVDVVEDKLKGEAMDLQ----HGSAFLKNPKIEADKDYSV-TANSKVVIV   77 (312)
T ss_pred             CEEEEECCCHHHHHHHHHH-HhcCCCCEEEEEeCCccHHHHHHHHHH----HhhccCCCCEEEECCCHHH-hCCCCEEEE
Confidence            4899999999999999876 45555  79999987643211111110    0000000 12222345655 899999998


Q ss_pred             e
Q 026023          243 L  243 (244)
Q Consensus       243 ~  243 (244)
                      +
T Consensus        78 t   78 (312)
T cd05293          78 T   78 (312)
T ss_pred             C
Confidence            5

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=95.17  E-value=0.094  Score=46.52  Aligned_cols=71  Identities=18%  Similarity=0.315  Sum_probs=50.2

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCc-------cccccCCHHHHhhhCC
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-------TWKRASSMDEVLREAD  238 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~ell~~sD  238 (244)
                      ++|.|+|.|+-|.++|..| .--|-+|..|.|.+... ++ ...     .+.+..++       ......||.+.++.||
T Consensus         2 ~kI~ViGaGswGTALA~~l-a~ng~~V~lw~r~~~~~-~~-i~~-----~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad   73 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVL-ARNGHEVRLWGRDEEIV-AE-INE-----TRENPKYLPGILLPPNLKATTDLAEALDGAD   73 (329)
T ss_pred             ceEEEEcCChHHHHHHHHH-HhcCCeeEEEecCHHHH-HH-HHh-----cCcCccccCCccCCcccccccCHHHHHhcCC
Confidence            4799999999999999998 57778999999986431 11 110     01122222       2334568999999999


Q ss_pred             EEEEeC
Q 026023          239 VVCTLC  244 (244)
Q Consensus       239 ~Vvl~~  244 (244)
                      +|++.+
T Consensus        74 ~iv~av   79 (329)
T COG0240          74 IIVIAV   79 (329)
T ss_pred             EEEEEC
Confidence            999853

>PRK07576 short chain dehydrogenase; Provisional

Probab=95.12  E-value=0.057  Score=46.07  Aligned_cols=40  Identities=20%  Similarity=0.158  Sum_probs=35.0

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .++.++++.|.|. |.||+.+++.| ...|++|+..+|+...
T Consensus         5 ~~~~~k~ilItGasggIG~~la~~l-~~~G~~V~~~~r~~~~   45 (264)
T PRK07576          5 FDFAGKNVVVVGGTSGINLGIAQAF-ARAGANVAVASRSQEK   45 (264)
T ss_pred             ccCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            4588999999988 89999999998 6899999999988643

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=95.05  E-value=0.099  Score=46.18  Aligned_cols=66  Identities=26%  Similarity=0.439  Sum_probs=44.3

Q ss_pred             CEEEEEcCChHHHH-HHHHHhccCC--cEE-EEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhC--CE
Q 026023          166 QTVGVIGAGRIGSA-YARMMVEGFK--MNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA--DV  239 (244)
Q Consensus       166 ~tvgIvG~G~IG~~-vA~~la~afG--~~V-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s--D~  239 (244)
                      .++||||+|.|++. .+..+ +..+  +.+ -.+|+++.. .+.+.+.||          .. ..+.+++++|+.-  |+
T Consensus         4 irvgiiG~G~~~~~~~~~~~-~~~~~~~~~vav~d~~~~~-a~~~a~~~~----------~~-~~~~~~~~ll~~~~iD~   70 (342)
T COG0673           4 IRVGIIGAGGIAGKAHLPAL-AALGGGLELVAVVDRDPER-AEAFAEEFG----------IA-KAYTDLEELLADPDIDA   70 (342)
T ss_pred             eEEEEEcccHHHHHHhHHHH-HhCCCceEEEEEecCCHHH-HHHHHHHcC----------CC-cccCCHHHHhcCCCCCE
Confidence            48999999988864 77776 6766  454 445776643 344444442          11 2457999999975  89


Q ss_pred             EEEeC
Q 026023          240 VCTLC  244 (244)
Q Consensus       240 Vvl~~  244 (244)
                      |+++.
T Consensus        71 V~Iat   75 (342)
T COG0673          71 VYIAT   75 (342)
T ss_pred             EEEcC
Confidence            98863

>PLN02272 glyceraldehyde-3-phosphate dehydrogenase

Probab=95.05  E-value=0.029  Score=51.42  Aligned_cols=35  Identities=20%  Similarity=0.418  Sum_probs=28.5

Q ss_pred             CEEEEEcCChHHHHHHHHHhcc-CCcEEEEEc-CCcch
Q 026023          166 QTVGVIGAGRIGSAYARMMVEG-FKMNLIYYD-LYQAT  201 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~a-fG~~V~~~~-~~~~~  201 (244)
                      .+|||.|||+||+.++|.+ .. ++++|.+.+ +....
T Consensus        86 ~kvgInGFGRIGR~v~R~~-~~~~~i~vvaINdp~~~~  122 (421)
T PLN02272         86 TKIGINGFGRIGRLVLRIA-TSRDDIEVVAVNDPFIDA  122 (421)
T ss_pred             eEEEEECcCHHHHHHHHHH-hhcCCcEEEEecCCCCCH
Confidence            4899999999999999995 64 899999855 45443

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=95.04  E-value=0.077  Score=45.59  Aligned_cols=70  Identities=23%  Similarity=0.320  Sum_probs=46.7

Q ss_pred             EEEEcC-ChHHHHHHHHHhccCC----cEEEEEcCCcchH--HHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          168 VGVIGA-GRIGSAYARMMVEGFK----MNLIYYDLYQATR--LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       168 vgIvG~-G~IG~~vA~~la~afG----~~V~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      |+|+|. |.+|..+|..| ..-|    -+|..+|......  .+...+.+   ....  ....+....++++.+++||+|
T Consensus         1 I~IIGagG~vG~~ia~~l-~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~---~~~~--~~~~i~~~~d~~~~~~~aDiV   74 (263)
T cd00650           1 IAVIGAGGNVGPALAFGL-ADGSVLLAIELVLYDIDEEKLKGVAMDLQDA---VEPL--ADIKVSITDDPYEAFKDADVV   74 (263)
T ss_pred             CEEECCCChHHHHHHHHH-HhCCCCcceEEEEEeCCcccchHHHHHHHHh---hhhc--cCcEEEECCchHHHhCCCCEE
Confidence            589999 99999999987 4656    6899999876431  11111111   1111  122344456789999999999


Q ss_pred             EEe
Q 026023          241 CTL  243 (244)
Q Consensus       241 vl~  243 (244)
                      +++
T Consensus        75 v~t   77 (263)
T cd00650          75 IIT   77 (263)
T ss_pred             EEC
Confidence            984

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=95.02  E-value=0.097  Score=46.18  Aligned_cols=72  Identities=22%  Similarity=0.203  Sum_probs=44.5

Q ss_pred             EEEEEcCChHHHHHHHHHhccCC--cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +|+|+|.|.+|..+|..| ...|  -+|..+|++......+..+.... . ... .... ....+. +-++.||+|++++
T Consensus         2 kI~IIGaG~VG~~~a~~l-~~~g~~~ev~l~D~~~~~~~g~a~dl~~~-~-~~~-~~~~-i~~~d~-~~l~~aDiViita   75 (308)
T cd05292           2 KVAIVGAGFVGSTTAYAL-LLRGLASEIVLVDINKAKAEGEAMDLAHG-T-PFV-KPVR-IYAGDY-ADCKGADVVVITA   75 (308)
T ss_pred             EEEEECCCHHHHHHHHHH-HHcCCCCEEEEEECCchhhhhHHHHHHcc-c-ccc-CCeE-EeeCCH-HHhCCCCEEEEcc
Confidence            699999999999999997 6778  58999999764321111111000 0 000 0111 122455 5589999999864

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=95.02  E-value=0.067  Score=45.11  Aligned_cols=39  Identities=26%  Similarity=0.198  Sum_probs=34.2

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .+.||++.|.|. |.||+.+|+.| ..-|++|+..+|+..+
T Consensus         7 ~~~~k~vlItGa~g~iG~~ia~~l-~~~G~~V~~~~r~~~~   46 (255)
T PRK07523          7 DLTGRRALVTGSSQGIGYALAEGL-AQAGAEVILNGRDPAK   46 (255)
T ss_pred             CCCCCEEEEECCcchHHHHHHHHH-HHcCCEEEEEeCCHHH
Confidence            478999999985 99999999998 5789999999998643

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=95.01  E-value=0.091  Score=45.97  Aligned_cols=38  Identities=18%  Similarity=0.242  Sum_probs=33.1

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcc
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA  200 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~  200 (244)
                      ++.|+++.|+|.|..+++++-.| ...|+ +|..++|+..
T Consensus       121 ~~~~k~vlvlGaGGaarAi~~~l-~~~g~~~i~i~nRt~~  159 (288)
T PRK12749        121 DIKGKTMVLLGAGGASTAIGAQG-AIEGLKEIKLFNRRDE  159 (288)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEeCCcc
Confidence            46889999999999999999987 57787 7999999853

>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]

Probab=94.93  E-value=0.072  Score=46.66  Aligned_cols=72  Identities=19%  Similarity=0.273  Sum_probs=51.9

Q ss_pred             cCCCEEEEEc---CChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023          163 LKGQTVGVIG---AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (244)
Q Consensus       163 l~g~tvgIvG---~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~  239 (244)
                      +.|++|+|+|   +|+...+.++.| +.||++|..++|..-..++...+.+       ......+...+..+|.++++|+
T Consensus       156 ~~gl~iaivGDlkhsRva~S~~~~L-~~~ga~v~lvsP~~L~~p~~i~~~l-------~~~~~~~~~~~~~e~~i~~~DV  227 (316)
T COG0540         156 LDGLKIAIVGDLKHSRVAHSNIQAL-KRFGAEVYLVSPETLLPPEYILEEL-------EEKGGVVVEHDSDEEVIEEADV  227 (316)
T ss_pred             cCCcEEEEEccccchHHHHHHHHHH-HHcCCEEEEECchHhCCchhHHHHH-------hhcCceEEEecchhhhhccCCE
Confidence            8999999999   899999999999 8999999999997433222222211       1111223445566669999999


Q ss_pred             EEE
Q 026023          240 VCT  242 (244)
Q Consensus       240 Vvl  242 (244)
                      +-+
T Consensus       228 l~~  230 (316)
T COG0540         228 LYM  230 (316)
T ss_pred             EEe
Confidence            864

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=94.91  E-value=0.067  Score=49.36  Aligned_cols=75  Identities=17%  Similarity=0.186  Sum_probs=45.5

Q ss_pred             EEEEEcCChHHHHHHH---HH--hccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023          167 TVGVIGAGRIGSAYAR---MM--VEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC  241 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~---~l--a~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv  241 (244)
                      +|+|+|.|.+|...+-   .+  ...-|.+|..+|+.+... +............ ......+....++++.++.||+|+
T Consensus         2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l-~~~~~~~~~~~~~-~~~~~~I~~ttD~~eal~~AD~Vi   79 (423)
T cd05297           2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERL-ETVEILAKKIVEE-LGAPLKIEATTDRREALDGADFVI   79 (423)
T ss_pred             eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHH-HHHHHHHHHHHHh-cCCCeEEEEeCCHHHHhcCCCEEE
Confidence            6999999999998544   21  123356899999987431 1111111111111 111233444678999999999999


Q ss_pred             Ee
Q 026023          242 TL  243 (244)
Q Consensus       242 l~  243 (244)
                      .+
T Consensus        80 ~a   81 (423)
T cd05297          80 NT   81 (423)
T ss_pred             Ee
Confidence            86

linked to 3D####ucture

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.89  E-value=0.066  Score=44.76  Aligned_cols=37  Identities=27%  Similarity=0.363  Sum_probs=33.7

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       163 l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      +.|+++.|.|. |.||+.+++.| ...|++|+.++|+..
T Consensus         3 ~~~~~~lItG~~g~iG~~~a~~l-~~~G~~vi~~~r~~~   40 (253)
T PRK08217          3 LKDKVIVITGGAQGLGRAMAEYL-AQKGAKLALIDLNQE   40 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHH
Confidence            67999999998 99999999998 688999999999864

>PLN02214 cinnamoyl-CoA reductase

Probab=94.89  E-value=0.096  Score=46.65  Aligned_cols=81  Identities=14%  Similarity=-0.002  Sum_probs=49.7

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      .+.+++|.|.|. |.||+.+++.| ..-|.+|.+..|+..............................+++++++.+|+|
T Consensus         7 ~~~~~~vlVTGatGfIG~~l~~~L-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~V   85 (342)
T PLN02214          7 SPAGKTVCVTGAGGYIASWIVKIL-LERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGV   85 (342)
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHH-HHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEE
Confidence            467899999997 99999999998 6889999999987543111111100000000000011222345678889999987


Q ss_pred             EEe
Q 026023          241 CTL  243 (244)
Q Consensus       241 vl~  243 (244)
                      +-+
T Consensus        86 ih~   88 (342)
T PLN02214         86 FHT   88 (342)
T ss_pred             EEe
Confidence            643

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=94.89  E-value=0.054  Score=45.92  Aligned_cols=35  Identities=29%  Similarity=0.538  Sum_probs=32.3

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .++|+||+|+.|..+.++| .--|-.|.+||+++..
T Consensus         1 M~iGmiGLGrMG~n~v~rl-~~~ghdvV~yD~n~~a   35 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRL-LDGGHDVVGYDVNQTA   35 (300)
T ss_pred             CcceeeccchhhHHHHHHH-HhCCCeEEEEcCCHHH
Confidence            3689999999999999998 8999999999999865

>PRK07326 short chain dehydrogenase; Provisional

Probab=94.87  E-value=0.079  Score=44.01  Aligned_cols=38  Identities=24%  Similarity=0.190  Sum_probs=32.7

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       163 l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +.++++.|.|. |.||+.+++.| ..-|.+|+.++|++..
T Consensus         4 ~~~~~ilItGatg~iG~~la~~l-~~~g~~V~~~~r~~~~   42 (237)
T PRK07326          4 LKGKVALITGGSKGIGFAIAEAL-LAEGYKVAITARDQKE   42 (237)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHH-HHCCCEEEEeeCCHHH
Confidence            56789999985 99999999998 5679999999998643

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=94.87  E-value=0.067  Score=44.68  Aligned_cols=70  Identities=17%  Similarity=0.210  Sum_probs=47.1

Q ss_pred             EEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          168 VGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       168 vgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      |.|+|. |++|+.+++.| ..-|.+|.+..|.+.+...+.+..-|.+.-     ...+...++|.+.|+.+|.|+++
T Consensus         1 I~V~GatG~~G~~v~~~L-~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv-----~~d~~~~~~l~~al~g~d~v~~~   71 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRAL-LSAGFSVRALVRDPSSDRAQQLQALGAEVV-----EADYDDPESLVAALKGVDAVFSV   71 (233)
T ss_dssp             EEEETTTSHHHHHHHHHH-HHTTGCEEEEESSSHHHHHHHHHHTTTEEE-----ES-TT-HHHHHHHHTTCSEEEEE
T ss_pred             CEEECCccHHHHHHHHHH-HhCCCCcEEEEeccchhhhhhhhcccceEe-----ecccCCHHHHHHHHcCCceEEee
Confidence            578885 99999999999 679999999999885433322221111110     11222345788899999999876

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=94.87  E-value=0.052  Score=55.19  Aligned_cols=74  Identities=23%  Similarity=0.319  Sum_probs=46.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCcE-------------EEEEcCCcchHHHHHHhhhhhhhhcCCCC--CccccccC
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-------------LIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWKRAS  228 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~~-------------V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  228 (244)
                      ..++|+|+|.|.||+.+|+.|++--+.+             |...|++... .+...+.+      .+..  .+.+...+
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~-a~~la~~~------~~~~~v~lDv~D~e  640 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKD-AKETVEGI------ENAEAVQLDVSDSE  640 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHH-HHHHHHhc------CCCceEEeecCCHH
Confidence            5789999999999999999996544444             8888988754 22222211      0111  11122223


Q ss_pred             CHHHHhhhCCEEEEeC
Q 026023          229 SMDEVLREADVVCTLC  244 (244)
Q Consensus       229 ~l~ell~~sD~Vvl~~  244 (244)
                      +|.++++++|+|++++
T Consensus       641 ~L~~~v~~~DaVIsal  656 (1042)
T PLN02819        641 SLLKYVSQVDVVISLL  656 (1042)
T ss_pred             HHHHhhcCCCEEEECC
Confidence            4555557899999864

>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated

Probab=94.86  E-value=0.66  Score=42.42  Aligned_cols=77  Identities=23%  Similarity=0.362  Sum_probs=49.8

Q ss_pred             ccCCCEEEEEcC-----C---hHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHH
Q 026023          162 LLKGQTVGVIGA-----G---RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV  233 (244)
Q Consensus       162 ~l~g~tvgIvG~-----G---~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  233 (244)
                      .+.|++|+|+|-     |   +...+++..+ ..||++|..+.|..-...++..+.--+..+..+   ..+....++++.
T Consensus       184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~-~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G---~~i~~~~d~~ea  259 (395)
T PRK07200        184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLM-TRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASG---GSFRQVNSMEEA  259 (395)
T ss_pred             ccCCCEEEEEeccccccCCcchHHHHHHHHH-HHcCCEEEEECCCccCCCHHHHHHHHHHHHHcC---CeEEEEcCHHHH
Confidence            378999999985     5   5668999997 799999999999742111111110000011111   223345799999


Q ss_pred             hhhCCEEEE
Q 026023          234 LREADVVCT  242 (244)
Q Consensus       234 l~~sD~Vvl  242 (244)
                      ++.+|+|..
T Consensus       260 v~~aDvVYt  268 (395)
T PRK07200        260 FKDADIVYP  268 (395)
T ss_pred             hCCCCEEEE
Confidence            999999975

>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function

Probab=94.85  E-value=0.068  Score=42.02  Aligned_cols=61  Identities=23%  Similarity=0.274  Sum_probs=41.6

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       163 l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      -.|++|++||+  +. .++++| +.-+.++..+++++.....               .... ......++++++||+|++
T Consensus         9 ~~~~~V~~VG~--f~-P~~~~l-~~~~~~v~v~d~~~~~~~~---------------~~~~-~~~~~~~~~l~~aD~vii   68 (147)
T PF04016_consen    9 GPGDKVGMVGY--FQ-PLVEKL-KERGAEVRVFDLNPDNIGE---------------EPGD-VPDEDAEEILPWADVVII   68 (147)
T ss_dssp             TTTSEEEEES----H-CCHHHH-CCCCSEEEEEESSGGG--S---------------SCT--EEGGGHHHHGGG-SEEEE
T ss_pred             cCCCEEEEEcC--cH-HHHHHH-hcCCCCEEEEECCCCCCCC---------------CCCc-CCHHHHHHHHccCCEEEE
Confidence            57899999996  21 267777 7899999999999854211               0111 133578999999999987


Q ss_pred             e
Q 026023          243 L  243 (244)
Q Consensus       243 ~  243 (244)
                      .
T Consensus        69 T   69 (147)
T PF04016_consen   69 T   69 (147)
T ss_dssp             E
T ss_pred             E
Confidence            5

; PDB: 3L5O_B 3NPG_A.

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=94.82  E-value=0.12  Score=44.10  Aligned_cols=34  Identities=26%  Similarity=0.449  Sum_probs=31.1

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      -++-|+|.|++++.+++++ +.+|++|..+|+++.
T Consensus       101 ~~L~IfGaG~va~~la~la-~~lGf~V~v~D~R~~  134 (246)
T TIGR02964       101 PHVVLFGAGHVGRALVRAL-APLPCRVTWVDSREA  134 (246)
T ss_pred             CEEEEECCcHHHHHHHHHH-hcCCCEEEEEeCCcc
Confidence            3799999999999999995 999999999998754

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=94.79  E-value=0.092  Score=43.96  Aligned_cols=38  Identities=18%  Similarity=0.183  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      ++.||++.|.|. |.||+.+|+.| ..-|++|+..+|+..
T Consensus         2 ~~~~k~vlItGas~gIG~~ia~~l-~~~G~~vi~~~r~~~   40 (248)
T TIGR01832         2 SLEGKVALVTGANTGLGQGIAVGL-AEAGADIVGAGRSEP   40 (248)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEcCchH
Confidence            378999999997 78999999999 678999999998753

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=94.78  E-value=0.083  Score=44.10  Aligned_cols=38  Identities=29%  Similarity=0.289  Sum_probs=33.5

Q ss_pred             ccCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       162 ~l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      .+.++++.|.| .|.||+.+++.| ..-|++|+.++|+..
T Consensus         3 ~~~~~~ilItGasg~iG~~l~~~l-~~~g~~V~~~~r~~~   41 (251)
T PRK12826          3 DLEGRVALVTGAARGIGRAIAVRL-AADGAEVIVVDICGD   41 (251)
T ss_pred             CCCCCEEEEcCCCCcHHHHHHHHH-HHCCCEEEEEeCCHH
Confidence            46789999999 699999999998 678999999999864

>PRK06172 short chain dehydrogenase; Provisional

Probab=94.78  E-value=0.068  Score=44.98  Aligned_cols=39  Identities=23%  Similarity=0.194  Sum_probs=34.0

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .+.|+++.|.|. |.||+.+++.| ..-|++|+.++|+...
T Consensus         4 ~l~~k~ilItGas~~iG~~ia~~l-~~~G~~v~~~~r~~~~   43 (253)
T PRK06172          4 TFSGKVALVTGGAAGIGRATALAF-AREGAKVVVADRDAAG   43 (253)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHH-HHcCCEEEEEeCCHHH
Confidence            478999999986 78999999999 6789999999998654

>PLN02602 lactate dehydrogenase

Probab=94.76  E-value=0.17  Score=45.57  Aligned_cols=73  Identities=16%  Similarity=0.166  Sum_probs=44.2

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCc--EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      ++|+|+|.|+||..+|-.| ...|.  ++..+|...........|-... . .... ...+....+. +-+++||+|+++
T Consensus        38 ~KI~IIGaG~VG~~~a~~l-~~~~l~~el~LiDi~~~~~~g~a~DL~~~-~-~~~~-~~~i~~~~dy-~~~~daDiVVit  112 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTI-LTQDLADELALVDVNPDKLRGEMLDLQHA-A-AFLP-RTKILASTDY-AVTAGSDLCIVT  112 (350)
T ss_pred             CEEEEECCCHHHHHHHHHH-HhCCCCCEEEEEeCCCchhhHHHHHHHhh-h-hcCC-CCEEEeCCCH-HHhCCCCEEEEC
Confidence            6999999999999999987 55555  7999998764321111121000 0 0000 1122212344 449999999986

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=94.75  E-value=0.049  Score=50.40  Aligned_cols=38  Identities=18%  Similarity=0.253  Sum_probs=33.4

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~  199 (244)
                      .++.|+||.|=|+|++|+..|++| ..+|++|++++.+.
T Consensus       233 ~~l~Gk~VaVqG~GnVg~~aa~~L-~e~GakVVavSD~~  270 (454)
T PTZ00079        233 DSLEGKTVVVSGSGNVAQYAVEKL-LQLGAKVLTMSDSD  270 (454)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCC
Confidence            468999999999999999999998 89999999555443

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=94.74  E-value=0.1  Score=49.64  Aligned_cols=39  Identities=26%  Similarity=0.228  Sum_probs=35.0

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      .++.++++.|+|.|.+|+.++..| ...|++|..++|+..
T Consensus       375 ~~~~~k~vlIlGaGGagrAia~~L-~~~G~~V~i~nR~~e  413 (529)
T PLN02520        375 SPLAGKLFVVIGAGGAGKALAYGA-KEKGARVVIANRTYE  413 (529)
T ss_pred             cCCCCCEEEEECCcHHHHHHHHHH-HHCCCEEEEEcCCHH
Confidence            357899999999999999999998 789999999999754

>PLN00106 malate dehydrogenase

Probab=94.74  E-value=0.1  Score=46.44  Aligned_cols=73  Identities=23%  Similarity=0.322  Sum_probs=46.2

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhccCCc--EEEEEcCCcchHHHHHHhhhhhhhhcCCCC-Ccc-ccccCCHHHHhhhC
Q 026023          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQ-PVT-WKRASSMDEVLREA  237 (244)
Q Consensus       163 l~g~tvgIvG~-G~IG~~vA~~la~afG~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~l~ell~~s  237 (244)
                      ...++|+|+|. |+||..+|-.| ...+.  ++..+|..+.. .+ ..|-     ...... .+. +...+++.+.++.|
T Consensus        16 ~~~~KV~IiGaaG~VG~~~a~~l-~~~~~~~el~L~Di~~~~-g~-a~Dl-----~~~~~~~~i~~~~~~~d~~~~l~~a   87 (323)
T PLN00106         16 APGFKVAVLGAAGGIGQPLSLLM-KMNPLVSELHLYDIANTP-GV-AADV-----SHINTPAQVRGFLGDDQLGDALKGA   87 (323)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHH-HhCCCCCEEEEEecCCCC-ee-Echh-----hhCCcCceEEEEeCCCCHHHHcCCC
Confidence            34569999999 99999999997 53343  89999987621 10 0010     000000 111 11235678999999


Q ss_pred             CEEEEe
Q 026023          238 DVVCTL  243 (244)
Q Consensus       238 D~Vvl~  243 (244)
                      |+|+++
T Consensus        88 DiVVit   93 (323)
T PLN00106         88 DLVIIP   93 (323)
T ss_pred             CEEEEe
Confidence            999985

>PRK06949 short chain dehydrogenase; Provisional

Probab=94.73  E-value=0.087  Score=44.34  Aligned_cols=39  Identities=18%  Similarity=0.290  Sum_probs=34.5

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .+.|+++.|.|. |.||+.+++.| ...|++|+..+|+...
T Consensus         6 ~~~~k~ilItGasg~IG~~~a~~l-~~~G~~Vi~~~r~~~~   45 (258)
T PRK06949          6 NLEGKVALVTGASSGLGARFAQVL-AQAGAKVVLASRRVER   45 (258)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            478999999996 99999999998 6889999999998643

>PRK10637 cysG siroheme synthase; Provisional

Probab=94.62  E-value=0.13  Score=47.97  Aligned_cols=72  Identities=13%  Similarity=0.140  Sum_probs=50.1

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      .+|.|++|.|||-|.++.+=++.| ..+|++|..+++...++..+...          ...+.+..-.-.++.++.+|+|
T Consensus         8 ~~l~~~~vlvvGgG~vA~rk~~~l-l~~ga~v~visp~~~~~~~~l~~----------~~~i~~~~~~~~~~dl~~~~lv   76 (457)
T PRK10637          8 CQLRDRDCLLVGGGDVAERKARLL-LDAGARLTVNALAFIPQFTAWAD----------AGMLTLVEGPFDESLLDTCWLA   76 (457)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCCCHHHHHHHh----------CCCEEEEeCCCChHHhCCCEEE
Confidence            579999999999999999988887 78999999999987665443221          0111111111234567888887


Q ss_pred             EEe
Q 026023          241 CTL  243 (244)
Q Consensus       241 vl~  243 (244)
                      +.+
T Consensus        77 ~~a   79 (457)
T PRK10637         77 IAA   79 (457)
T ss_pred             EEC
Confidence            765

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=94.58  E-value=0.057  Score=49.15  Aligned_cols=38  Identities=21%  Similarity=0.287  Sum_probs=35.2

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      ++.|+||.|=|+|+.|+..|+.| ...|++|+++|-+..
T Consensus       204 ~l~G~rVaVQG~GNVg~~aa~~l-~~~GAkvva~sds~g  241 (411)
T COG0334         204 DLEGARVAVQGFGNVGQYAAEKL-HELGAKVVAVSDSKG  241 (411)
T ss_pred             CcCCCEEEEECccHHHHHHHHHH-HHcCCEEEEEEcCCC
Confidence            48999999999999999999998 788999999998865

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=94.55  E-value=0.051  Score=46.40  Aligned_cols=33  Identities=27%  Similarity=0.501  Sum_probs=31.3

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEE
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY  195 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~  195 (244)
                      ++.|+++.|-|+|++|+.+|+.| ...|++|+++
T Consensus        29 ~l~g~~v~IqGfG~VG~~~a~~l-~~~Ga~vv~v   61 (244)
T PF00208_consen   29 SLEGKRVAIQGFGNVGSHAARFL-AELGAKVVAV   61 (244)
T ss_dssp             SSTTCEEEEEESSHHHHHHHHHH-HHTTEEEEEE
T ss_pred             CcCCCEEEEECCCHHHHHHHHHH-HHcCCEEEEE
Confidence            58999999999999999999999 7999999887

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=94.54  E-value=0.14  Score=39.52  Aligned_cols=31  Identities=23%  Similarity=0.317  Sum_probs=27.7

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCc-EEEEEcCC
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY  198 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~  198 (244)
                      +|.|+|.|.+|.++++.| ...|. ++..+|..
T Consensus         1 ~VliiG~GglGs~ia~~L-~~~Gv~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGLGGLGSEIALNL-ARSGVGKITLIDFD   32 (143)
T ss_pred             CEEEECCCHHHHHHHHHH-HHCCCCEEEEEcCC
Confidence            589999999999999999 69998 68888865

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK08589 short chain dehydrogenase; Validated

Probab=94.51  E-value=0.094  Score=44.91  Aligned_cols=36  Identities=22%  Similarity=0.215  Sum_probs=32.4

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCC
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  198 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~  198 (244)
                      .+.||++.|.|. |.||+++|+.| ..-|++|+..+|+
T Consensus         3 ~l~~k~vlItGas~gIG~aia~~l-~~~G~~vi~~~r~   39 (272)
T PRK08589          3 RLENKVAVITGASTGIGQASAIAL-AQEGAYVLAVDIA   39 (272)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCc
Confidence            368999999997 78999999999 6789999999998

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=94.51  E-value=0.11  Score=46.31  Aligned_cols=34  Identities=21%  Similarity=0.313  Sum_probs=26.5

Q ss_pred             EEEEEcCChHHHHHHHHHhccC----CcEEEEEcCCcch
Q 026023          167 TVGVIGAGRIGSAYARMMVEGF----KMNLIYYDLYQAT  201 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~af----G~~V~~~~~~~~~  201 (244)
                      +|||.|||+||+.+.|.+ ...    +.+|...+.....
T Consensus         1 ~IaInGfGrIGR~vlr~l-~e~~~~~~~~vvaInd~~~~   38 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRAL-YESGERLGIEVVALNELADQ   38 (325)
T ss_pred             CEEEECCCHHHHHHHHHH-HhcCCCCCeEEEEEecCCCH
Confidence            489999999999999986 544    3788887764444

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.48  E-value=0.14  Score=47.27  Aligned_cols=37  Identities=19%  Similarity=0.214  Sum_probs=33.6

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       163 l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      +.++++.|+|+|.+|...++.| +..|.+|.++|....
T Consensus         4 ~~~~~i~v~G~G~sG~s~~~~l-~~~G~~v~~~D~~~~   40 (438)
T PRK03806          4 YQGKKVVIIGLGLTGLSCVDFF-LARGVTPRVIDTRIT   40 (438)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHH-HHCCCeEEEEcCCCC
Confidence            5688999999999999999998 899999999998654

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.48  E-value=0.094  Score=43.83  Aligned_cols=39  Identities=26%  Similarity=0.308  Sum_probs=34.0

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ++.++++.|.|. |.||+.+++.| ...|++|+.++|++..
T Consensus         2 ~~~~~~vlItGasg~iG~~l~~~l-~~~G~~V~~~~r~~~~   41 (251)
T PRK07231          2 RLEGKVAIVTGASSGIGEGIARRF-AAEGARVVVTDRNEEA   41 (251)
T ss_pred             CcCCcEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            367899999985 89999999998 6789999999998744

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=94.46  E-value=0.091  Score=48.36  Aligned_cols=34  Identities=24%  Similarity=0.367  Sum_probs=30.5

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ++.|+|+|.+|..+|+.| +..|.+|.++|....+
T Consensus         1 ~~~~iG~G~~G~a~a~~l-~~~G~~V~~sD~~~~~   34 (433)
T TIGR01087         1 KILILGLGKTGRAVARFL-HKKGAEVTVTDLKPNE   34 (433)
T ss_pred             CEEEEEeCHhHHHHHHHH-HHCCCEEEEEeCCCCc
Confidence            378999999999999998 8999999999987553

>PLN02342 ornithine carbamoyltransferase

Probab=94.44  E-value=0.56  Score=42.17  Aligned_cols=73  Identities=21%  Similarity=0.198  Sum_probs=50.3

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC  241 (244)
Q Consensus       163 l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv  241 (244)
                      +.|++|+++|= .++...++..+ ..||++|..+.|..-...++..+.    ....+.  ..+...+++++.++.+|+|.
T Consensus       192 l~glkva~vGD~~nva~Sli~~~-~~~G~~v~~~~P~~~~~~~~~~~~----a~~~g~--~~~~~~~d~~eav~~aDVvy  264 (348)
T PLN02342        192 LEGTKVVYVGDGNNIVHSWLLLA-AVLPFHFVCACPKGYEPDAKTVEK----ARAAGI--SKIEITNDPAEAVKGADVVY  264 (348)
T ss_pred             cCCCEEEEECCCchhHHHHHHHH-HHcCCEEEEECCcccccCHHHHHH----HHHhCC--CcEEEEcCHHHHhCCCCEEE
Confidence            78999999987 46888889987 799999999998653322222211    111111  12334579999999999997


Q ss_pred             E
Q 026023          242 T  242 (244)
Q Consensus       242 l  242 (244)
                      .
T Consensus       265 ~  265 (348)
T PLN02342        265 T  265 (348)
T ss_pred             E
Confidence            5

>PRK05866 short chain dehydrogenase; Provisional

Probab=94.42  E-value=0.11  Score=45.12  Aligned_cols=40  Identities=20%  Similarity=0.169  Sum_probs=35.2

Q ss_pred             ccccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          160 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       160 ~~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      +..+.|+++.|.|. |.||+.+|+.| ..-|++|+..+|+..
T Consensus        35 ~~~~~~k~vlItGasggIG~~la~~L-a~~G~~Vi~~~R~~~   75 (293)
T PRK05866         35 PVDLTGKRILLTGASSGIGEAAAEQF-ARRGATVVAVARRED   75 (293)
T ss_pred             CcCCCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEECCHH
Confidence            45688999999996 99999999998 578999999999864

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=94.41  E-value=0.081  Score=36.67  Aligned_cols=34  Identities=24%  Similarity=0.288  Sum_probs=31.1

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ++.|+|.|.||-++|..| ..+|.+|..+.+++..
T Consensus         1 ~vvViGgG~ig~E~A~~l-~~~g~~vtli~~~~~~   34 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEAL-AELGKEVTLIERSDRL   34 (80)
T ss_dssp             EEEEESSSHHHHHHHHHH-HHTTSEEEEEESSSSS
T ss_pred             CEEEECcCHHHHHHHHHH-HHhCcEEEEEeccchh
Confidence            588999999999999998 8999999999998754

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=94.39  E-value=0.09  Score=50.19  Aligned_cols=38  Identities=18%  Similarity=0.112  Sum_probs=33.2

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       163 l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      -.|+++.|.|. |.||+.+++.| ...|++|.+++|+...
T Consensus        78 ~~gKvVLVTGATGgIG~aLAr~L-Lk~G~~Vval~Rn~ek  116 (576)
T PLN03209         78 KDEDLAFVAGATGKVGSRTVREL-LKLGFRVRAGVRSAQR  116 (576)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHH-HHCCCeEEEEeCCHHH
Confidence            47889999996 99999999998 6889999999998644

>PRK07890 short chain dehydrogenase; Provisional

Probab=94.39  E-value=0.1  Score=43.87  Aligned_cols=38  Identities=21%  Similarity=0.212  Sum_probs=33.4

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       163 l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +.++++.|.|. |.||+.+|+.| ..-|++|+..+|++..
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l-~~~G~~V~~~~r~~~~   41 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRA-ARAGADVVLAARTAER   41 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHH-HHcCCEEEEEeCCHHH
Confidence            67899999985 89999999998 6899999999998643

>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=94.37  E-value=0.08  Score=39.06  Aligned_cols=57  Identities=16%  Similarity=0.105  Sum_probs=39.6

Q ss_pred             HHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       176 IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      -+..+++.| +..|++|.+|||............           ..++...+++++.++.+|+|++++
T Consensus        18 p~~~l~~~L-~~~g~~V~~~DP~v~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~D~vvl~t   74 (106)
T PF03720_consen   18 PALELIEEL-KERGAEVSVYDPYVDEEEIKELGK-----------LEGVEVCDDLEEALKGADAVVLAT   74 (106)
T ss_dssp             HHHHHHHHH-HHTT-EEEEE-TTSHHHHHHHHCH-----------HHCEEEESSHHHHHTTESEEEESS
T ss_pred             HHHHHHHHH-HHCCCEEEEECCccChHHHHhhCC-----------ccceEEecCHHHHhcCCCEEEEEe
Confidence            567899998 899999999999987643321000           012334578999999999999874

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.36  E-value=0.12  Score=43.90  Aligned_cols=39  Identities=23%  Similarity=0.197  Sum_probs=33.6

Q ss_pred             cccCCCEEEEEcCC---hHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          161 NLLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       161 ~~l~g~tvgIvG~G---~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      .++.||++.|.|.+   .||+++|+.| ..-|++|+..+|+.+
T Consensus         6 ~~~~~k~~lItGas~g~GIG~a~a~~l-a~~G~~v~l~~r~~~   47 (258)
T PRK07533          6 LPLAGKRGLVVGIANEQSIAWGCARAF-RALGAELAVTYLNDK   47 (258)
T ss_pred             cccCCCEEEEECCCCCCcHHHHHHHHH-HHcCCEEEEEeCChh
Confidence            45789999999986   6999999999 578999999888753

>PRK09189 uroporphyrinogen-III synthase; Validated

Probab=94.35  E-value=0.8  Score=38.58  Aligned_cols=53  Identities=15%  Similarity=0.209  Sum_probs=31.6

Q ss_pred             eEEEEeCCCCch-HHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEe
Q 026023           16 YRVVSTKPMPGT-RWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIG   68 (244)
Q Consensus        16 ~~ilv~~~~~~~-~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~   68 (244)
                      |+|++|.+.+.. ...+.|++.|.++...+.-+.....++..+.+.+.+|.++.
T Consensus         1 m~VLvTRp~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~l~~~~d~iif   54 (240)
T PRK09189          1 MRVLVTRPEPAAERTAARLRAMGHEPVLLPLSRPVHDVAAAFTALSEPHGAIAV   54 (240)
T ss_pred             CeEEEECCCCchHHHHHHHHHCCCceEEecccccccChhhhhhhhcCCcCEEEE
Confidence            689999987653 34567888898887665433222223333344433676554

>PRK12937 short chain dehydrogenase; Provisional

Probab=94.32  E-value=0.15  Score=42.46  Aligned_cols=37  Identities=27%  Similarity=0.203  Sum_probs=31.4

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       163 l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      +.++++.|.|. |.||+.+|+.| ..-|++|+...++..
T Consensus         3 ~~~~~vlItG~~~~iG~~la~~l-~~~g~~v~~~~~~~~   40 (245)
T PRK12937          3 LSNKVAIVTGASRGIGAAIARRL-AADGFAVAVNYAGSA   40 (245)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEecCCCH
Confidence            67899999985 99999999999 688999888776543

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=94.31  E-value=0.11  Score=47.17  Aligned_cols=54  Identities=17%  Similarity=0.116  Sum_probs=40.4

Q ss_pred             HHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCC
Q 026023          139 VEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY  198 (244)
Q Consensus       139 ~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~  198 (244)
                      .+|.++++-..|..     .....|.+++|.|+|.|.+|..+++.| ...|. ++..+|..
T Consensus        20 ~ry~Rqi~l~~~g~-----~~q~~l~~~~VliiG~GglG~~v~~~L-a~~Gvg~i~ivD~D   74 (370)
T PRK05600         20 RRTARQLALPGFGI-----EQQERLHNARVLVIGAGGLGCPAMQSL-ASAGVGTITLIDDD   74 (370)
T ss_pred             HHhhcccchhhhCH-----HHHHHhcCCcEEEECCCHHHHHHHHHH-HHcCCCEEEEEeCC
Confidence            34555544444421     123568999999999999999999999 68998 78888876

>PRK14804 ornithine carbamoyltransferase; Provisional

Probab=94.30  E-value=0.7  Score=40.90  Aligned_cols=72  Identities=18%  Similarity=0.254  Sum_probs=50.4

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch-HH-HHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCC
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT-RL-EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (244)
                      .+.|++|+++|- +++...++..+ ..||++|....|..-. .. ++..+.    ....+    .+...+++++.++.+|
T Consensus       150 ~l~g~~va~vGd~~rv~~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~----~~~~g----~i~~~~d~~~av~~aD  220 (311)
T PRK14804        150 PLNQKQLTYIGVHNNVVNSLIGIT-AALGIHLTLVTPIAAKENIHAQTVER----AKKKG----TLSWEMNLHKAVSHAD  220 (311)
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHH-HHcCCEEEEECCCCccHHHHHHHHHH----HHhcC----CeEEEeCHHHHhCCCC
Confidence            378999999997 78999999997 7899999999996532 11 111110    11111    1223478999999999


Q ss_pred             EEEE
Q 026023          239 VVCT  242 (244)
Q Consensus       239 ~Vvl  242 (244)
                      +|..
T Consensus       221 vvy~  224 (311)
T PRK14804        221 YVYT  224 (311)
T ss_pred             EEEe
Confidence            9975

>PRK05867 short chain dehydrogenase; Provisional

Probab=94.30  E-value=0.13  Score=43.41  Aligned_cols=39  Identities=18%  Similarity=0.070  Sum_probs=34.2

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .+.||++.|.|. |.||+++++.| ..-|++|+..+|+...
T Consensus         6 ~~~~k~vlVtGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~   45 (253)
T PRK05867          6 DLHGKRALITGASTGIGKRVALAY-VEAGAQVAIAARHLDA   45 (253)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEcCCHHH
Confidence            478999999997 78999999999 6889999999987643

>PTZ00325 malate dehydrogenase; Provisional

Probab=94.26  E-value=0.2  Score=44.60  Aligned_cols=74  Identities=26%  Similarity=0.326  Sum_probs=45.9

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhcc--CCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCcccccc---CCHHHHhh
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEG--FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA---SSMDEVLR  235 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~a--fG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~ell~  235 (244)
                      .++.++|+|+|. |+||..+|-.| ..  +.-++..+|............       .... ...+...   .+..+.++
T Consensus         5 ~~~~~KI~IiGaaG~VGs~~a~~l-~~~~~~~elvL~Di~~~~g~a~Dl~-------~~~~-~~~v~~~td~~~~~~~l~   75 (321)
T PTZ00325          5 ALKMFKVAVLGAAGGIGQPLSLLL-KQNPHVSELSLYDIVGAPGVAADLS-------HIDT-PAKVTGYADGELWEKALR   75 (321)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHH-hcCCCCCEEEEEecCCCcccccchh-------hcCc-CceEEEecCCCchHHHhC
Confidence            367779999999 99999999987 53  445899999832111010000       0011 1112211   23378999


Q ss_pred             hCCEEEEeC
Q 026023          236 EADVVCTLC  244 (244)
Q Consensus       236 ~sD~Vvl~~  244 (244)
                      .||+|+++.
T Consensus        76 gaDvVVita   84 (321)
T PTZ00325         76 GADLVLICA   84 (321)
T ss_pred             CCCEEEECC
Confidence            999999863

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=94.25  E-value=0.087  Score=46.38  Aligned_cols=33  Identities=21%  Similarity=0.237  Sum_probs=29.7

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~  199 (244)
                      .+++|+|.|.||..+|-+| ..-|..|..++|+.
T Consensus         3 m~I~IiGaGaiG~~~a~~L-~~~G~~V~lv~r~~   35 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRL-ARAGLPVRLILRDR   35 (305)
T ss_pred             ceEEEECCCHHHHHHHHHH-HhCCCCeEEEEech
Confidence            4799999999999999999 56799999999974

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.24  E-value=0.11  Score=43.09  Aligned_cols=38  Identities=24%  Similarity=0.262  Sum_probs=33.6

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       163 l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +.|+++.|.|. |.||+.+++.| ..-|++|++.+|+...
T Consensus         3 ~~~~~vlItGa~g~iG~~~a~~l-~~~G~~V~~~~r~~~~   41 (238)
T PRK05786          3 LKGKKVAIIGVSEGLGYAVAYFA-LKEGAQVCINSRNENK   41 (238)
T ss_pred             cCCcEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            67899999987 77999999998 7889999999998643

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=94.22  E-value=0.079  Score=48.04  Aligned_cols=35  Identities=31%  Similarity=0.466  Sum_probs=31.8

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .++||+|+|-||--+|-.+ ..-|.+|+|||-+.+.
T Consensus        10 ~~I~ViGLGYVGLPlA~~f-A~~G~~ViG~DIn~~~   44 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAF-ASAGFKVIGVDINQKK   44 (436)
T ss_pred             eEEEEEccccccHHHHHHH-HHcCCceEeEeCCHHH
Confidence            7999999999999999998 5889999999988654

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=94.21  E-value=0.3  Score=42.97  Aligned_cols=68  Identities=19%  Similarity=0.254  Sum_probs=40.9

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCCcEEEE-EcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh-----hCC
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EAD  238 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~sD  238 (244)
                      ..++||||.|+||+..+..+.+.-++++.+ +++.+........+.+       +   ++ ..+++.+++++     +.|
T Consensus         4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~-------G---i~-~~~~~ie~LL~~~~~~dID   72 (302)
T PRK08300          4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRL-------G---VA-TSAEGIDGLLAMPEFDDID   72 (302)
T ss_pred             CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHc-------C---CC-cccCCHHHHHhCcCCCCCC
Confidence            358999999999999766663444677664 4454432111111111       1   11 12468999995     478


Q ss_pred             EEEEe
Q 026023          239 VVCTL  243 (244)
Q Consensus       239 ~Vvl~  243 (244)
                      +|+.+
T Consensus        73 iVf~A   77 (302)
T PRK08300         73 IVFDA   77 (302)
T ss_pred             EEEEC
Confidence            78875

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=94.21  E-value=0.2  Score=45.02  Aligned_cols=64  Identities=20%  Similarity=0.310  Sum_probs=44.6

Q ss_pred             CEEEEEcCChHHHHHHHHHhccC--CcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGF--KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~af--G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      .+|||+|. .+|+.-++.+ +..  +.++.++-....+..+++.+.||            +..+.+++|++++.|+++++
T Consensus         4 ~rVgViG~-~~G~~h~~al-~~~~~~~eLvaV~d~~~erA~~~A~~~g------------i~~y~~~eell~d~Di~~V~   69 (343)
T TIGR01761         4 QSVVVCGT-RFGQFYLAAF-AAAPERFELAGILAQGSERSRALAHRLG------------VPLYCEVEELPDDIDIACVV   69 (343)
T ss_pred             cEEEEEeH-HHHHHHHHHH-HhCCCCcEEEEEEcCCHHHHHHHHHHhC------------CCccCCHHHHhcCCCEEEEE
Confidence            58999999 6899999887 555  57877644443344455444442            22357999999988988876

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>PRK08628 short chain dehydrogenase; Provisional

Probab=94.20  E-value=0.11  Score=43.88  Aligned_cols=39  Identities=23%  Similarity=0.184  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ++.|+++.|.| .|.||+.+|+.| ..-|++|+..+|++..
T Consensus         4 ~l~~~~ilItGasggiG~~la~~l-~~~G~~v~~~~r~~~~   43 (258)
T PRK08628          4 NLKDKVVIVTGGASGIGAAISLRL-AEEGAIPVIFGRSAPD   43 (258)
T ss_pred             CcCCCEEEEeCCCChHHHHHHHHH-HHcCCcEEEEcCChhh
Confidence            58899999998 578999999999 6889999999987643

>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=94.19  E-value=0.67  Score=40.92  Aligned_cols=63  Identities=21%  Similarity=0.343  Sum_probs=48.6

Q ss_pred             cCCCEEEEEcC---ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023          163 LKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (244)
Q Consensus       163 l~g~tvgIvG~---G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~  239 (244)
                      +.|++|+++|=   +++..+++..+ ..||++|....|..-.. ++ .              ......+++++.++.+|+
T Consensus       154 l~g~kv~~vGD~~~~~v~~Sl~~~~-~~~g~~~~~~~P~~~~~-~~-~--------------~~~~~~~d~~ea~~~aDv  216 (305)
T PRK00856        154 LEGLKVAIVGDIKHSRVARSNIQAL-TRLGAEVRLIAPPTLLP-EG-M--------------PEYGVHTDLDEVIEDADV  216 (305)
T ss_pred             CCCCEEEEECCCCCCcHHHHHHHHH-HHcCCEEEEECCcccCc-cc-c--------------cceEEECCHHHHhCCCCE
Confidence            78999999987   59999999997 79999999999865321 11 0              012345799999999999


Q ss_pred             EEE
Q 026023          240 VCT  242 (244)
Q Consensus       240 Vvl  242 (244)
                      |..
T Consensus       217 vyt  219 (305)
T PRK00856        217 VMM  219 (305)
T ss_pred             EEE
Confidence            865

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=94.16  E-value=0.18  Score=42.11  Aligned_cols=36  Identities=22%  Similarity=0.177  Sum_probs=30.4

Q ss_pred             ccCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCC
Q 026023          162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLY  198 (244)
Q Consensus       162 ~l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~  198 (244)
                      .+.++++.|.| .|.||+.+|++| ...|++|+...++
T Consensus         3 ~~~~~~~lItG~s~~iG~~la~~l-~~~g~~v~~~~~~   39 (247)
T PRK12935          3 QLNGKVAIVTGGAKGIGKAITVAL-AQEGAKVVINYNS   39 (247)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHH-HHcCCEEEEEcCC
Confidence            36789999998 789999999998 6899999876544

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=94.14  E-value=0.23  Score=43.41  Aligned_cols=76  Identities=25%  Similarity=0.294  Sum_probs=47.4

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC  241 (244)
Q Consensus       163 l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv  241 (244)
                      +.|+++.|+|.|-.|++++--| ...|+ +|..++|+... .++..+.+..   ..+..........++++.+..+|+|+
T Consensus       125 ~~~k~vlilGaGGaarAi~~aL-~~~g~~~i~i~nR~~~k-a~~La~~~~~---~~~~~~~~~~~~~~~~~~~~~~divI  199 (283)
T PRK14027        125 AKLDSVVQVGAGGVGNAVAYAL-VTHGVQKLQVADLDTSR-AQALADVINN---AVGREAVVGVDARGIEDVIAAADGVV  199 (283)
T ss_pred             cCCCeEEEECCcHHHHHHHHHH-HHCCCCEEEEEcCCHHH-HHHHHHHHhh---ccCcceEEecCHhHHHHHHhhcCEEE
Confidence            5688999999999999999998 67998 69999998643 2332222110   00100011111113355678899988


Q ss_pred             Ee
Q 026023          242 TL  243 (244)
Q Consensus       242 l~  243 (244)
                      .+
T Consensus       200 Na  201 (283)
T PRK14027        200 NA  201 (283)
T ss_pred             Ec
Confidence            64

>PRK05086 malate dehydrogenase; Provisional

Probab=94.11  E-value=0.14  Score=45.24  Aligned_cols=72  Identities=29%  Similarity=0.272  Sum_probs=44.2

Q ss_pred             CEEEEEcC-ChHHHHHHHHHh--ccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCcccc--ccCCHHHHhhhCCEE
Q 026023          166 QTVGVIGA-GRIGSAYARMMV--EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK--RASSMDEVLREADVV  240 (244)
Q Consensus       166 ~tvgIvG~-G~IG~~vA~~la--~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~sD~V  240 (244)
                      ++++|+|. |.||+.++..|+  ..++..+..+++.+...... .+ +    .... ......  ..+++.+.++.+|+|
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~a-lD-l----~~~~-~~~~i~~~~~~d~~~~l~~~DiV   73 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVA-VD-L----SHIP-TAVKIKGFSGEDPTPALEGADVV   73 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCccee-hh-h----hcCC-CCceEEEeCCCCHHHHcCCCCEE
Confidence            47999999 999999997652  34556889999874321000 01 0    0000 001111  135778889999999


Q ss_pred             EEeC
Q 026023          241 CTLC  244 (244)
Q Consensus       241 vl~~  244 (244)
                      +++.
T Consensus        74 Iita   77 (312)
T PRK05086         74 LISA   77 (312)
T ss_pred             EEcC
Confidence            9864

>PRK05876 short chain dehydrogenase; Provisional

Probab=94.10  E-value=0.13  Score=44.30  Aligned_cols=38  Identities=18%  Similarity=0.189  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       162 ~l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      ++.||++.|.| .|.||+.+|+.| ..-|++|+..+++..
T Consensus         3 ~~~~k~vlVTGas~gIG~ala~~L-a~~G~~Vv~~~r~~~   41 (275)
T PRK05876          3 GFPGRGAVITGGASGIGLATGTEF-ARRGARVVLGDVDKP   41 (275)
T ss_pred             CcCCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEeCCHH
Confidence            47899999997 778999999999 688999999998764

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=94.04  E-value=0.19  Score=41.45  Aligned_cols=37  Identities=27%  Similarity=0.377  Sum_probs=32.3

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcE-EEEEcCC
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLY  198 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~-V~~~~~~  198 (244)
                      ..|.+.+|.|+|.|.+|.++++.| -..|.+ +..+|..
T Consensus        15 ~~L~~s~VlviG~gglGsevak~L-~~~GVg~i~lvD~d   52 (198)
T cd01485          15 NKLRSAKVLIIGAGALGAEIAKNL-VLAGIDSITIVDHR   52 (198)
T ss_pred             HHHhhCcEEEECCCHHHHHHHHHH-HHcCCCEEEEEECC
Confidence            458999999999999999999999 688994 8888765

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=94.03  E-value=0.059  Score=41.81  Aligned_cols=32  Identities=22%  Similarity=0.331  Sum_probs=27.4

Q ss_pred             EEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       168 vgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      +-|+|.|.+|+.+++.+ +.+|++|..+|+++.
T Consensus         1 L~I~GaG~va~al~~la-~~lg~~v~v~d~r~e   32 (136)
T PF13478_consen    1 LVIFGAGHVARALARLA-ALLGFRVTVVDPRPE   32 (136)
T ss_dssp             EEEES-STCHHHHHHHH-HHCTEEEEEEES-CC
T ss_pred             CEEEeCcHHHHHHHHHH-HhCCCEEEEEcCCcc
Confidence            46999999999999995 999999999999864

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=93.98  E-value=0.18  Score=44.52  Aligned_cols=69  Identities=19%  Similarity=0.245  Sum_probs=42.5

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCc--EEEEEcCCcchHHHHHHhhhhhhhhcCCCC----CccccccCCHHHHhhhCCEE
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQ----PVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~ell~~sD~V  240 (244)
                      +|+|+|.|+||..+|-.| -.-|.  ++..+|........+-.|-     ......    .... +. +-.+-++.||+|
T Consensus         1 Ki~IIGaG~VG~~~a~~l-~~~~~~~elvL~Di~~~~a~g~a~DL-----~~~~~~~~~~~~~i-~~-~~y~~~~~aDiv   72 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYA-LALGLFSEIVLIDVNEGVAEGEALDF-----HHATALTYSTNTKI-RA-GDYDDCADADII   72 (307)
T ss_pred             CEEEECCCHHHHHHHHHH-HhcCCCCEEEEEeCCcchhhHHHHHH-----HhhhccCCCCCEEE-EE-CCHHHhCCCCEE
Confidence            589999999999998876 34454  7999998754321111111     000110    1111 12 336899999999


Q ss_pred             EEe
Q 026023          241 CTL  243 (244)
Q Consensus       241 vl~  243 (244)
                      +++
T Consensus        73 vit   75 (307)
T cd05290          73 VIT   75 (307)
T ss_pred             EEC
Confidence            986

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06523 short chain dehydrogenase; Provisional

Probab=93.98  E-value=0.084  Score=44.60  Aligned_cols=40  Identities=18%  Similarity=0.111  Sum_probs=34.4

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ..+.|+++.|.|. |.||+.+++.| ..-|++|+..+|+...
T Consensus         5 ~~~~~k~vlItGas~gIG~~ia~~l-~~~G~~v~~~~r~~~~   45 (260)
T PRK06523          5 LELAGKRALVTGGTKGIGAATVARL-LEAGARVVTTARSRPD   45 (260)
T ss_pred             cCCCCCEEEEECCCCchhHHHHHHH-HHCCCEEEEEeCChhh
Confidence            3578999999995 89999999999 6789999999987543

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=93.97  E-value=0.16  Score=43.00  Aligned_cols=40  Identities=23%  Similarity=0.264  Sum_probs=33.0

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .++.||++.|.|. |.||+++|+.| ..-|++|+...++..+
T Consensus         4 ~~l~~k~vlItGas~gIG~~ia~~l-~~~G~~v~~~~~~~~~   44 (260)
T PRK08416          4 NEMKGKTLVISGGTRGIGKAIVYEF-AQSGVNIAFTYNSNVE   44 (260)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEcCCCHH
Confidence            3588999999987 77999999999 6899999888665433

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=93.93  E-value=0.13  Score=47.32  Aligned_cols=78  Identities=18%  Similarity=0.208  Sum_probs=49.7

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (244)
Q Consensus       161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~  239 (244)
                      .++.||++.|.|. |.||+++++.| ..-|++|+..+|+.....+. ....+   .............+++.+.+.+.|+
T Consensus       174 ~sl~gK~VLITGASgGIG~aLA~~L-a~~G~~Vi~l~r~~~~l~~~-~~~~~---~~v~~v~~Dvsd~~~v~~~l~~IDi  248 (406)
T PRK07424        174 LSLKGKTVAVTGASGTLGQALLKEL-HQQGAKVVALTSNSDKITLE-INGED---LPVKTLHWQVGQEAALAELLEKVDI  248 (406)
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHH-HhhcC---CCeEEEEeeCCCHHHHHHHhCCCCE
Confidence            4678999999987 89999999998 67899999999875432111 10000   0000001122223346677888999


Q ss_pred             EEEe
Q 026023          240 VCTL  243 (244)
Q Consensus       240 Vvl~  243 (244)
                      ++.+
T Consensus       249 LInn  252 (406)
T PRK07424        249 LIIN  252 (406)
T ss_pred             EEEC
Confidence            8865

>PRK06701 short chain dehydrogenase; Provisional

Probab=93.92  E-value=0.18  Score=43.82  Aligned_cols=39  Identities=23%  Similarity=0.256  Sum_probs=33.8

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      ..+.|+++.|.|. |.||..+++.| ..-|++|+.++++..
T Consensus        42 ~~~~~k~iLItGasggIG~~la~~l-~~~G~~V~l~~r~~~   81 (290)
T PRK06701         42 GKLKGKVALITGGDSGIGRAVAVLF-AKEGADIAIVYLDEH   81 (290)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCcc
Confidence            4688999999985 78999999999 578999999988754

>PRK12939 short chain dehydrogenase; Provisional

Probab=93.90  E-value=0.19  Score=41.98  Aligned_cols=38  Identities=26%  Similarity=0.350  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      .+.++++.|.|. |.||+.+|+.| ..-|++|+.++|++.
T Consensus         4 ~~~~~~vlItGa~g~iG~~la~~l-~~~G~~v~~~~r~~~   42 (250)
T PRK12939          4 NLAGKRALVTGAARGLGAAFAEAL-AEAGATVAFNDGLAA   42 (250)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHH-HHcCCEEEEEeCCHH
Confidence            367899999985 89999999998 688999999988754

>PRK06057 short chain dehydrogenase; Provisional

Probab=93.89  E-value=0.15  Score=43.09  Aligned_cols=38  Identities=24%  Similarity=0.308  Sum_probs=34.0

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       163 l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +.|+++.|.|. |.||+.+++.| ..-|++|+.++|+...
T Consensus         5 ~~~~~vlItGasggIG~~~a~~l-~~~G~~v~~~~r~~~~   43 (255)
T PRK06057          5 LAGRVAVITGGGSGIGLATARRL-AAEGATVVVGDIDPEA   43 (255)
T ss_pred             CCCCEEEEECCCchHHHHHHHHH-HHcCCEEEEEeCCHHH
Confidence            78999999998 99999999999 6889999999987543

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.89  E-value=0.16  Score=47.07  Aligned_cols=34  Identities=29%  Similarity=0.404  Sum_probs=31.1

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +|.|+|.|..|...|+.| ...|.+|.++|+...+
T Consensus         2 ~v~viG~G~sG~s~a~~l-~~~G~~V~~~D~~~~~   35 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLL-KAQGWEVVVSDRNDSP   35 (459)
T ss_pred             eEEEEccCHHHHHHHHHH-HHCCCEEEEECCCCch
Confidence            589999999999999998 8999999999987654

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=93.85  E-value=0.13  Score=41.91  Aligned_cols=65  Identities=14%  Similarity=0.247  Sum_probs=45.2

Q ss_pred             EEEEEcCChHHHHHHHHH-hccCCcE-EEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhh--CCEEEE
Q 026023          167 TVGVIGAGRIGSAYARMM-VEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVVCT  242 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~l-a~afG~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--sD~Vvl  242 (244)
                      .+-|||.|++|++++..= .+-.||+ +-+||-.+..        .|+     ....+++...++|++.+++  .|+.++
T Consensus        86 nviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~--------VG~-----~~~~v~V~~~d~le~~v~~~dv~iaiL  152 (211)
T COG2344          86 NVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDK--------VGT-----KIGDVPVYDLDDLEKFVKKNDVEIAIL  152 (211)
T ss_pred             eEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHH--------hCc-----ccCCeeeechHHHHHHHHhcCccEEEE
Confidence            689999999999998751 2456887 5567776543        232     2234677788899999994  556666


Q ss_pred             eC
Q 026023          243 LC  244 (244)
Q Consensus       243 ~~  244 (244)
                      ++
T Consensus       153 tV  154 (211)
T COG2344         153 TV  154 (211)
T ss_pred             Ec
Confidence            53

>PRK12367 short chain dehydrogenase; Provisional

Probab=93.80  E-value=0.14  Score=43.57  Aligned_cols=76  Identities=20%  Similarity=0.240  Sum_probs=48.6

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (244)
Q Consensus       161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~  239 (244)
                      ..+.|+++.|.|. |.||+++|+.| ..-|++|+..+|+..+..+...+      ..............++++.+...|+
T Consensus        10 ~~l~~k~~lITGas~gIG~ala~~l-~~~G~~Vi~~~r~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~iDi   82 (245)
T PRK12367         10 STWQGKRIGITGASGALGKALTKAF-RAKGAKVIGLTHSKINNSESNDE------SPNEWIKWECGKEESLDKQLASLDV   82 (245)
T ss_pred             HhhCCCEEEEEcCCcHHHHHHHHHH-HHCCCEEEEEECCchhhhhhhcc------CCCeEEEeeCCCHHHHHHhcCCCCE
Confidence            4588999999987 67999999998 68999999999876322111000      0000001122222345667778898


Q ss_pred             EEEe
Q 026023          240 VCTL  243 (244)
Q Consensus       240 Vvl~  243 (244)
                      ++.+
T Consensus        83 lVnn   86 (245)
T PRK12367         83 LILN   86 (245)
T ss_pred             EEEC
Confidence            8765

>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated

Probab=93.79  E-value=2.4  Score=38.44  Aligned_cols=148  Identities=16%  Similarity=0.147  Sum_probs=82.8

Q ss_pred             CCCCCeEEEEeCCCCchHHHHHHHhCCCeEEEeccCCCC-C-C---HHHHHHHhc-CCccEEEeccCccccHHHH-----
Q 026023           11 NPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTI-L-S---VEDIIALIG-DKCDGVIGQLTEDWGETLF-----   79 (244)
Q Consensus        11 ~~~~~~~ilv~~~~~~~~~~~~l~~~~~~v~~~~~~~~~-~-~---~~~~~~~~~-~~ad~ii~~~~~~~~~~~l-----   79 (244)
                      .|..-.+|+||.+.....+.+.|++.|.++...+.-+.. . +   -++....+. +++|.++..+...+. .++     
T Consensus         7 ~pL~g~rIlvtr~~~a~~la~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~~~~l~~~~~d~vvfTS~ngv~-~~~~~l~~   85 (381)
T PRK07239          7 APLAGFTVGVTAARRAEELAALLERRGARVVHAPALRIVPLADDDELRAATRALIAAPPDIVVATTGIGFR-GWVEAADG   85 (381)
T ss_pred             CCCCCcEEEEeccCCHHHHHHHHHHcCCeEEEecCEEEecCCCcHHHHHHHHHHHcCCCCEEEEeChHHHH-HHHHHHHH
Confidence            466678999998655556677888888887654322111 1 1   122333332 247876654321111 122     


Q ss_pred             --------HHhhccCCcEEEEcccCCCccChHHHhhCCcEEEecCC-CCCcchHHHHHHHHHHHHhChHHHHHHHHcCCC
Q 026023           80 --------AALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPG-VLTETTAELAASLSLAAARRIVEADEFMRAGLY  150 (244)
Q Consensus        80 --------~~~p~l~~k~I~~~~aG~d~id~~~~~~~gI~v~n~~~-~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w  150 (244)
                              +.+.++  +++ ..|.+.    ..++.+.|+.+.-.|. ..++.+++..    ..                 
T Consensus        86 ~~~~~~~~~~l~~~--~i~-aVG~~T----a~aL~~~G~~~~~~p~~~~~e~L~~~l----~~-----------------  137 (381)
T PRK07239         86 WGLADELLEALSSA--RLL-ARGPKA----TGAIRAAGLREEWSPASESSAEVLEYL----LE-----------------  137 (381)
T ss_pred             cCChHHHHHHHcCC--eEE-EECccH----HHHHHHcCCCCccCCCCCccHHHHHHH----hc-----------------
Confidence                    222222  443 333332    4667788998766653 3344444332    11                 


Q ss_pred             CCCCCCcccccccCCCEEEEEcCC-----hHHHHHHHHHhccCCcEEEEEcCC
Q 026023          151 DGWLPNLFVGNLLKGQTVGVIGAG-----RIGSAYARMMVEGFKMNLIYYDLY  198 (244)
Q Consensus       151 ~~~~~~~~~~~~l~g~tvgIvG~G-----~IG~~vA~~la~afG~~V~~~~~~  198 (244)
                                ....|++|.|.-.|     .....+.+.| +..|++|..+.-+
T Consensus       138 ----------~~~~g~~vli~~~~~~~~~~~~~~L~~~L-~~~G~~V~~~~vY  179 (381)
T PRK07239        138 ----------EGVAGKRIAVQLHGATDEWEPLPEFLEAL-RAAGAEVVPVPVY  179 (381)
T ss_pred             ----------CCCCCCEEEEEcCCCccccCchHHHHHHH-HHCCCEEEEeCcE
Confidence                      12567899998666     4445799998 8999987766655

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=93.78  E-value=0.15  Score=50.15  Aligned_cols=36  Identities=19%  Similarity=0.370  Sum_probs=30.9

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ++|+|||.|.+|..+|..+|..-|++|..+|+++..
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~  340 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQG  340 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHH
Confidence            589999999999999998732479999999998753

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=93.78  E-value=0.2  Score=44.60  Aligned_cols=72  Identities=21%  Similarity=0.200  Sum_probs=43.5

Q ss_pred             EEEEEcC-ChHHHHHHHHHhccCC-------cEEEEEcCCcchH-HHH-HHhhhhhhhhcCCCCCccccccCCHHHHhhh
Q 026023          167 TVGVIGA-GRIGSAYARMMVEGFK-------MNLIYYDLYQATR-LEK-FVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (244)
Q Consensus       167 tvgIvG~-G~IG~~vA~~la~afG-------~~V~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  236 (244)
                      +|+|+|. |.||..++..| ...+       .+|..+|+.+..+ .+. ..+.    ...............++.+.++.
T Consensus         4 kV~I~GAaG~VG~~la~~L-~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl----~d~~~~~~~~~~~~~~~~~~l~~   78 (325)
T cd01336           4 RVLVTGAAGQIAYSLLPMI-AKGDVFGPDQPVILHLLDIPPALKALEGVVMEL----QDCAFPLLKSVVATTDPEEAFKD   78 (325)
T ss_pred             EEEEECCCCHHHHHHHHHH-HhCcccCCCCCcEEEEEEcCCccccccceeeeh----hhccccccCCceecCCHHHHhCC
Confidence            6999999 99999999987 4533       4899999865321 111 0010    00000000011123578899999


Q ss_pred             CCEEEEe
Q 026023          237 ADVVCTL  243 (244)
Q Consensus       237 sD~Vvl~  243 (244)
                      ||+|+++
T Consensus        79 aDiVI~t   85 (325)
T cd01336          79 VDVAILV   85 (325)
T ss_pred             CCEEEEe
Confidence            9999875

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=93.76  E-value=0.076  Score=45.33  Aligned_cols=38  Identities=26%  Similarity=0.378  Sum_probs=32.9

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCc
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ  199 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~  199 (244)
                      ..|.+++|+|+|.|.+|..+++.| ...|. ++..+|...
T Consensus        28 ~~L~~~~VliiG~GglGs~va~~L-a~~Gvg~i~lvD~D~   66 (245)
T PRK05690         28 EKLKAARVLVVGLGGLGCAASQYL-AAAGVGTLTLVDFDT   66 (245)
T ss_pred             HHhcCCeEEEECCCHHHHHHHHHH-HHcCCCEEEEEcCCE
Confidence            569999999999999999999999 58888 688877653

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=93.74  E-value=0.19  Score=41.98  Aligned_cols=34  Identities=15%  Similarity=0.171  Sum_probs=28.7

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcC
Q 026023          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDL  197 (244)
Q Consensus       163 l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~  197 (244)
                      +.||++.|.|. |.||+.+|+.| ..-|++|+...+
T Consensus         1 ~~~k~~lVtG~s~giG~~~a~~l-~~~G~~vv~~~~   35 (246)
T PRK12938          1 MSQRIAYVTGGMGGIGTSICQRL-HKDGFKVVAGCG   35 (246)
T ss_pred             CCCCEEEEECCCChHHHHHHHHH-HHcCCEEEEEcC
Confidence            35789999985 99999999999 688999888654

>PRK08192 aspartate carbamoyltransferase; Provisional

Probab=93.72  E-value=0.25  Score=44.24  Aligned_cols=74  Identities=11%  Similarity=0.208  Sum_probs=49.9

Q ss_pred             ccCCCEEEEEcC---ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCC
Q 026023          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (244)
Q Consensus       162 ~l~g~tvgIvG~---G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (244)
                      .+.|++|.++|=   ++...+++..++..+|++|..+.|..-...++..+.    +...   ...+...++++|.++.+|
T Consensus       156 ~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~----~~~~---g~~~~~~~d~~ea~~~aD  228 (338)
T PRK08192        156 GIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISD----IENA---GHKITITDQLEGNLDKAD  228 (338)
T ss_pred             CcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHH----HHHc---CCeEEEEcCHHHHHccCC
Confidence            488999999998   578888888764456999999998653211222211    1111   122334579999999999


Q ss_pred             EEEE
Q 026023          239 VVCT  242 (244)
Q Consensus       239 ~Vvl  242 (244)
                      +|..
T Consensus       229 vvyt  232 (338)
T PRK08192        229 ILYL  232 (338)
T ss_pred             EEEE
Confidence            9875

>PRK09186 flagellin modification protein A; Provisional

Probab=93.72  E-value=0.24  Score=41.58  Aligned_cols=38  Identities=34%  Similarity=0.414  Sum_probs=33.2

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       163 l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +.||++.|.|. |.||+.+|+.| ..-|++|+..+|+...
T Consensus         2 ~~~k~vlItGas~giG~~~a~~l-~~~g~~v~~~~r~~~~   40 (256)
T PRK09186          2 LKGKTILITGAGGLIGSALVKAI-LEAGGIVIAADIDKEA   40 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEecChHH
Confidence            57899999996 79999999999 6889999999987643

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.71  E-value=0.29  Score=42.86  Aligned_cols=39  Identities=26%  Similarity=0.294  Sum_probs=33.6

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      .++.||++.|.|. |.||+.+|+.| ..-|++|+..++...
T Consensus         8 ~~l~~k~~lVTGas~gIG~~ia~~L-~~~Ga~Vv~~~~~~~   47 (306)
T PRK07792          8 TDLSGKVAVVTGAAAGLGRAEALGL-ARLGATVVVNDVASA   47 (306)
T ss_pred             cCCCCCEEEEECCCChHHHHHHHHH-HHCCCEEEEecCCch
Confidence            5689999999986 67999999999 578999999987643

>PRK06270 homoserine dehydrogenase; Provisional

Probab=93.66  E-value=0.3  Score=43.77  Aligned_cols=29  Identities=17%  Similarity=0.447  Sum_probs=23.5

Q ss_pred             EEEEEcCChHHHHHHHHHhccC----------CcEEEEEc
Q 026023          167 TVGVIGAGRIGSAYARMMVEGF----------KMNLIYYD  196 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~af----------G~~V~~~~  196 (244)
                      +|||+|+|.||+.+++.| ...          +++|.++.
T Consensus         4 ~V~IiG~G~VG~~~~~~L-~~~~~~~~~~~g~~~~vvai~   42 (341)
T PRK06270          4 KIALIGFGGVGQGVAELL-AEKREYLKKRYGLDLKVVAIA   42 (341)
T ss_pred             EEEEECCCHHHHHHHHHH-HHhHHHHHHHcCCCEEEEEEE
Confidence            799999999999999987 433          67866553

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=93.56  E-value=0.24  Score=42.13  Aligned_cols=36  Identities=22%  Similarity=0.102  Sum_probs=30.4

Q ss_pred             ccCCCEEEEEcC---ChHHHHHHHHHhccCCcEEEEEcCC
Q 026023          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLY  198 (244)
Q Consensus       162 ~l~g~tvgIvG~---G~IG~~vA~~la~afG~~V~~~~~~  198 (244)
                      ++.||++.|.|.   +.||+++|+.| ..-|++|....++
T Consensus         3 ~l~~k~~lItGas~~~GIG~aia~~l-a~~G~~v~~~~~~   41 (258)
T PRK07370          3 DLTGKKALVTGIANNRSIAWGIAQQL-HAAGAELGITYLP   41 (258)
T ss_pred             ccCCcEEEEeCCCCCCchHHHHHHHH-HHCCCEEEEEecC
Confidence            478999999997   48999999999 5899999877554

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=93.56  E-value=0.19  Score=42.42  Aligned_cols=37  Identities=22%  Similarity=0.240  Sum_probs=32.9

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCC
Q 026023          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  198 (244)
Q Consensus       161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~  198 (244)
                      ..+.|+++.|.|. |.||+.+++.| ...|++|+.++++
T Consensus        11 ~~l~~k~vlItGas~gIG~~ia~~l-~~~G~~v~~~~~~   48 (258)
T PRK06935         11 FSLDGKVAIVTGGNTGLGQGYAVAL-AKAGADIIITTHG   48 (258)
T ss_pred             ccCCCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEeCC
Confidence            3588999999986 78999999999 6889999999887

>PRK07478 short chain dehydrogenase; Provisional

Probab=93.55  E-value=0.23  Score=41.76  Aligned_cols=39  Identities=26%  Similarity=0.274  Sum_probs=33.8

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ++.|+++.|.|. |.||+.+++.| ..-|++|+..+|++.+
T Consensus         3 ~~~~k~~lItGas~giG~~ia~~l-~~~G~~v~~~~r~~~~   42 (254)
T PRK07478          3 RLNGKVAIITGASSGIGRAAAKLF-AREGAKVVVGARRQAE   42 (254)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            478899999986 78999999999 6889999999988643

>CHL00194 ycf39 Ycf39; Provisional

Probab=93.55  E-value=0.15  Score=44.74  Aligned_cols=66  Identities=12%  Similarity=0.138  Sum_probs=44.3

Q ss_pred             EEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCC--CccccccCCHHHHhhhCCEEEE
Q 026023          167 TVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       167 tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      +|.|.| .|.||+.+++.| ..-|.+|.+.+|++...  .....       .+..  ........++.+.++.+|+|+.
T Consensus         2 kIlVtGatG~iG~~lv~~L-l~~g~~V~~l~R~~~~~--~~l~~-------~~v~~v~~Dl~d~~~l~~al~g~d~Vi~   70 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQA-LDEGYQVRCLVRNLRKA--SFLKE-------WGAELVYGDLSLPETLPPSFKGVTAIID   70 (317)
T ss_pred             EEEEECCCcHHHHHHHHHH-HHCCCeEEEEEcChHHh--hhHhh-------cCCEEEECCCCCHHHHHHHHCCCCEEEE
Confidence            688998 699999999998 67899999999986431  11000       0111  1112233467888999998774

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=93.54  E-value=0.39  Score=41.95  Aligned_cols=67  Identities=19%  Similarity=0.327  Sum_probs=40.2

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEE-EcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--hCCEEEE
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVVCT  242 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sD~Vvl  242 (244)
                      .++||||.|+||+..+..+.+.=++++.+ +++.+.....+..+.+       +   .+ ..+.+.+++++  +-|+|++
T Consensus         2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~-------G---i~-~~~~~~e~ll~~~dIDaV~i   70 (285)
T TIGR03215         2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARAREL-------G---VK-TSAEGVDGLLANPDIDIVFD   70 (285)
T ss_pred             cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHC-------C---CC-EEECCHHHHhcCCCCCEEEE
Confidence            37999999999998866553444677665 5555543211111111       1   11 13457899986  4677887


Q ss_pred             e
Q 026023          243 L  243 (244)
Q Consensus       243 ~  243 (244)
                      +
T Consensus        71 a   71 (285)
T TIGR03215        71 A   71 (285)
T ss_pred             C
Confidence            5

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PRK15076 alpha-galactosidase; Provisional

Probab=93.54  E-value=0.23  Score=46.01  Aligned_cols=74  Identities=15%  Similarity=0.132  Sum_probs=44.8

Q ss_pred             CEEEEEcCChHHHHHHH--HHh--ccC-CcEEEEEcCCcchHH--HHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCC
Q 026023          166 QTVGVIGAGRIGSAYAR--MMV--EGF-KMNLIYYDLYQATRL--EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~--~la--~af-G~~V~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (244)
                      .+|+|||.|++|-..+-  .++  +++ |-+|..+|..+....  .......   .... .....+....++.+.++.||
T Consensus         2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~---~~~~-~~~~~i~~ttD~~eal~dAD   77 (431)
T PRK15076          2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKL---AESL-GASAKITATTDRREALQGAD   77 (431)
T ss_pred             cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHH---HHhc-CCCeEEEEECCHHHHhCCCC
Confidence            47999999999944322  111  345 458999999864421  1111111   1111 11234444678999999999


Q ss_pred             EEEEe
Q 026023          239 VVCTL  243 (244)
Q Consensus       239 ~Vvl~  243 (244)
                      ||+.+
T Consensus        78 fVv~t   82 (431)
T PRK15076         78 YVINA   82 (431)
T ss_pred             EEeEe
Confidence            99976

>PRK08862 short chain dehydrogenase; Provisional

Probab=93.53  E-value=0.24  Score=41.49  Aligned_cols=39  Identities=21%  Similarity=0.280  Sum_probs=34.1

Q ss_pred             ccCCCEEEEEcCCh-HHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~G~-IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ++.|+++.|.|.++ ||+++|+.| ..-|++|+.++|+...
T Consensus         2 ~~~~k~~lVtGas~GIG~aia~~l-a~~G~~V~~~~r~~~~   41 (227)
T PRK08862          2 DIKSSIILITSAGSVLGRTISCHF-ARLGATLILCDQDQSA   41 (227)
T ss_pred             CCCCeEEEEECCccHHHHHHHHHH-HHCCCEEEEEcCCHHH
Confidence            47899999999876 999999999 6899999999997653

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.52  E-value=0.22  Score=42.61  Aligned_cols=36  Identities=22%  Similarity=0.247  Sum_probs=31.6

Q ss_pred             cCCCEEEEEcCC---hHHHHHHHHHhccCCcEEEEEcCCc
Q 026023          163 LKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQ  199 (244)
Q Consensus       163 l~g~tvgIvG~G---~IG~~vA~~la~afG~~V~~~~~~~  199 (244)
                      +.||++.|.|.+   .||+++|+.| ..-|++|+..+|+.
T Consensus         4 l~~k~~lITGas~~~GIG~aia~~l-a~~G~~vil~~r~~   42 (262)
T PRK07984          4 LSGKRILVTGVASKLSIAYGIAQAM-HREGAELAFTYQND   42 (262)
T ss_pred             cCCCEEEEeCCCCCccHHHHHHHHH-HHCCCEEEEEecch
Confidence            679999999997   5999999999 57899999888763

>PRK04148 hypothetical protein; Provisional

Probab=93.48  E-value=0.16  Score=39.35  Aligned_cols=36  Identities=17%  Similarity=0.278  Sum_probs=32.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .++++.+||+| -|..+|+.| ...|..|+++|.++..
T Consensus        16 ~~~kileIG~G-fG~~vA~~L-~~~G~~ViaIDi~~~a   51 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKL-KESGFDVIVIDINEKA   51 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHH-HHCCCEEEEEECCHHH
Confidence            56789999999 999999998 6899999999999874

>PRK07035 short chain dehydrogenase; Provisional

Probab=93.42  E-value=0.2  Score=42.12  Aligned_cols=38  Identities=24%  Similarity=0.246  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       162 ~l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      .+.++++.|.| .|.||..+++.| ..-|++|+..+|+..
T Consensus         5 ~l~~k~vlItGas~gIG~~l~~~l-~~~G~~Vi~~~r~~~   43 (252)
T PRK07035          5 DLTGKIALVTGASRGIGEAIAKLL-AQQGAHVIVSSRKLD   43 (252)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCHH
Confidence            47889999998 678999999999 678999999998754

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=93.41  E-value=0.24  Score=41.39  Aligned_cols=38  Identities=32%  Similarity=0.420  Sum_probs=32.8

Q ss_pred             cCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          163 LKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       163 l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +.++++.|.| .|.||+.+++.| ..-|.+|..++|+...
T Consensus         1 ~~~~~ilItGas~~iG~~la~~l-~~~g~~v~~~~r~~~~   39 (250)
T TIGR03206         1 LKDKTAIVTGGGGGIGGATCRRF-AEEGAKVAVFDLNREA   39 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHH-HHCCCEEEEecCCHHH
Confidence            4688999998 588999999998 6889999999987643

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=93.37  E-value=0.36  Score=42.41  Aligned_cols=72  Identities=19%  Similarity=0.180  Sum_probs=44.1

Q ss_pred             EEEEcCChHHHHHHHHHhccCC--cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          168 VGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       168 vgIvG~G~IG~~vA~~la~afG--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      |+|+|.|.+|..+|-.| ...|  -++..+|...... +.....+......  ..........+ .+.++.||+|+++.
T Consensus         1 i~iiGaG~VG~~~a~~l-~~~~~~~el~l~D~~~~~~-~g~~~DL~~~~~~--~~~~~i~~~~~-~~~l~~aDiVIita   74 (300)
T cd00300           1 ITIIGAGNVGAAVAFAL-IAKGLASELVLVDVNEEKA-KGDALDLSHASAF--LATGTIVRGGD-YADAADADIVVITA   74 (300)
T ss_pred             CEEECCCHHHHHHHHHH-HhcCCCCEEEEEeCCccHH-HHHHHhHHHhccc--cCCCeEEECCC-HHHhCCCCEEEEcC
Confidence            58999999999999987 5777  4799999976431 1111111111111  01112222234 57999999999863

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=93.36  E-value=0.25  Score=41.60  Aligned_cols=38  Identities=32%  Similarity=0.315  Sum_probs=33.8

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       163 l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +.|+++.|.|. |.||+.+++.| ..-|.+|+..+|++..
T Consensus         5 ~~~~~vlItGasg~iG~~la~~l-~~~G~~v~~~~r~~~~   43 (262)
T PRK13394          5 LNGKTAVVTGAASGIGKEIALEL-ARAGAAVAIADLNQDG   43 (262)
T ss_pred             CCCCEEEEECCCChHHHHHHHHH-HHCCCeEEEEeCChHH
Confidence            67899999988 99999999999 6889999999998743

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=93.35  E-value=0.28  Score=46.01  Aligned_cols=80  Identities=15%  Similarity=0.113  Sum_probs=51.9

Q ss_pred             ccCCCEEEEEcC----------ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhh----hhcCC------CCC
Q 026023          162 LLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF----LKANG------EQP  221 (244)
Q Consensus       162 ~l~g~tvgIvG~----------G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~----~~~~~------~~~  221 (244)
                      ++.|++|+|+|+          ..-...+++.| ...|++|.+|||........  +.++..    .....      ...
T Consensus       321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L-~~~G~~V~~~DP~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  397 (473)
T PLN02353        321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGL-LGDKAKLSIYDPQVTEEQIQ--RDLSMNKFDWDHPRHLQPMSPTAV  397 (473)
T ss_pred             ccCCCEEEEEeeeecCCCCccccChHHHHHHHH-HhCCCEEEEECCCCChHHHH--HHhhcccccccccccccccccccc
Confidence            589999999998          56788999999 89999999999985442110  011000    00000      000


Q ss_pred             ccccccCCHHHHhhhCCEEEEeC
Q 026023          222 VTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       222 ~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      ......+++++.++.||+|+++.
T Consensus       398 ~~~~~~~~~~~a~~~aD~vvi~t  420 (473)
T PLN02353        398 KQVSVVWDAYEATKGAHGICILT  420 (473)
T ss_pred             cceeeeCCHHHHhcCCCEEEECC
Confidence            01233457789999999999863

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=93.31  E-value=0.26  Score=41.44  Aligned_cols=39  Identities=26%  Similarity=0.271  Sum_probs=34.1

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      ..+.|+++.|.|. |.||+.+++.| ..-|++|+.++|+..
T Consensus         7 ~~~~~k~ilItGas~~IG~~la~~l-~~~G~~v~~~~r~~~   46 (256)
T PRK06124          7 FSLAGQVALVTGSARGLGFEIARAL-AGAGAHVLVNGRNAA   46 (256)
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHH-HHcCCeEEEEeCCHH
Confidence            3588999999986 78999999998 578999999999864

>PLN02206 UDP-glucuronate decarboxylase

Probab=93.28  E-value=0.23  Score=46.15  Aligned_cols=38  Identities=29%  Similarity=0.246  Sum_probs=32.6

Q ss_pred             cccCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023          161 NLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (244)
Q Consensus       161 ~~l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~  199 (244)
                      ..-.+++|.|.| .|-||+.+++.| ..-|.+|+++++..
T Consensus       115 ~~~~~~kILVTGatGfIGs~Lv~~L-l~~G~~V~~ld~~~  153 (442)
T PLN02206        115 LKRKGLRVVVTGGAGFVGSHLVDRL-MARGDSVIVVDNFF  153 (442)
T ss_pred             cccCCCEEEEECcccHHHHHHHHHH-HHCcCEEEEEeCCC
Confidence            344678999999 599999999999 78899999998753

>PRK07774 short chain dehydrogenase; Provisional

Probab=93.27  E-value=0.24  Score=41.42  Aligned_cols=38  Identities=26%  Similarity=0.374  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      .+.|+++.|.|. |.||+.+++.| ..-|++|+..+|+..
T Consensus         3 ~~~~k~vlItGasg~iG~~la~~l-~~~g~~vi~~~r~~~   41 (250)
T PRK07774          3 RFDDKVAIVTGAAGGIGQAYAEAL-AREGASVVVADINAE   41 (250)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHH
Confidence            367899999997 99999999998 678999999999854

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=93.25  E-value=0.17  Score=37.71  Aligned_cols=55  Identities=13%  Similarity=0.225  Sum_probs=33.6

Q ss_pred             cCChHHHHHHHHHhccC----CcEEEEEcCCc---chHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--hCCEEE
Q 026023          172 GAGRIGSAYARMMVEGF----KMNLIYYDLYQ---ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVVC  241 (244)
Q Consensus       172 G~G~IG~~vA~~la~af----G~~V~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sD~Vv  241 (244)
                      |+|.||+.+++.| +..    +++|.++-.+.   .........              ......++++++.  ..|+||
T Consensus         1 G~G~VG~~l~~~l-~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~dvvV   64 (117)
T PF03447_consen    1 GFGNVGRGLLEQL-KEQQERIDLEVVGVADRSMLISKDWAASFP--------------DEAFTTDLEELIDDPDIDVVV   64 (117)
T ss_dssp             --SHHHHHHHHHH-HHTHHHCEEEEEEEEESSEEEETTHHHHHT--------------HSCEESSHHHHHTHTT-SEEE
T ss_pred             CCCHHHHHHHHHH-HhCcccCCEEEEEEEECCchhhhhhhhhcc--------------cccccCCHHHHhcCcCCCEEE
Confidence            8999999999998 554    78876665444   111111111              1223468999999  899887

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=93.24  E-value=0.18  Score=44.89  Aligned_cols=38  Identities=21%  Similarity=0.245  Sum_probs=33.1

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      .+++++|.|.|. |-||+.+++.| ..-|.+|+++++...
T Consensus        12 ~~~~~~vlVtGatGfiG~~lv~~L-~~~g~~V~~~d~~~~   50 (348)
T PRK15181         12 VLAPKRWLITGVAGFIGSGLLEEL-LFLNQTVIGLDNFST   50 (348)
T ss_pred             cccCCEEEEECCccHHHHHHHHHH-HHCCCEEEEEeCCCC
Confidence            367789999995 99999999999 788999999998653

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=93.23  E-value=0.26  Score=39.71  Aligned_cols=32  Identities=34%  Similarity=0.494  Sum_probs=28.0

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCc
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ  199 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~  199 (244)
                      +|+|+|.|.+|..+++.| ...|. ++..+|...
T Consensus         1 ~VlViG~GglGs~ia~~L-a~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLL-ARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHH-HHcCCCeEEEEeCCE
Confidence            489999999999999999 57898 598888875

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2

Probab=93.22  E-value=0.13  Score=46.35  Aligned_cols=34  Identities=24%  Similarity=0.401  Sum_probs=31.2

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +|||+|-|..|..+++.+ +.+|.+|+.+++++..
T Consensus         1 kililG~g~~~~~l~~aa-~~~G~~v~~~d~~~~~   34 (380)
T TIGR01142         1 RVLLLGSGELGKEVAIEA-QRLGVEVIAVDRYANA   34 (380)
T ss_pred             CEEEECCCHHHHHHHHHH-HHcCCEEEEEeCCCCC
Confidence            589999999999999995 9999999999998754

This enzyme is an alternative to PurN (TIGR00639)

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=93.22  E-value=0.24  Score=41.62  Aligned_cols=39  Identities=21%  Similarity=0.330  Sum_probs=33.7

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ++.||++.|.|. |.||+.+|+.| ..-|++|+..+|+...
T Consensus         6 ~l~~k~~lItGas~giG~~ia~~L-~~~G~~vvl~~r~~~~   45 (254)
T PRK08085          6 SLAGKNILITGSAQGIGFLLATGL-AEYGAEIIINDITAER   45 (254)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHH-HHcCCEEEEEcCCHHH
Confidence            578999999984 78999999999 6789999999998543

>PRK06194 hypothetical protein; Provisional

Probab=93.19  E-value=0.23  Score=42.57  Aligned_cols=38  Identities=29%  Similarity=0.449  Sum_probs=32.7

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      ++.++++.|.|. |.||+.+++.| ..-|++|+.++++..
T Consensus         3 ~~~~k~vlVtGasggIG~~la~~l-~~~G~~V~~~~r~~~   41 (287)
T PRK06194          3 DFAGKVAVITGAASGFGLAFARIG-AALGMKLVLADVQQD   41 (287)
T ss_pred             CCCCCEEEEeCCccHHHHHHHHHH-HHCCCEEEEEeCChH
Confidence            367889999985 88999999998 688999999998754

>PRK08339 short chain dehydrogenase; Provisional

Probab=93.17  E-value=0.27  Score=41.93  Aligned_cols=39  Identities=18%  Similarity=0.185  Sum_probs=33.7

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .+.||++.|.|. |.||+++|+.| ..-|++|+.++|+...
T Consensus         5 ~l~~k~~lItGas~gIG~aia~~l-~~~G~~V~~~~r~~~~   44 (263)
T PRK08339          5 DLSGKLAFTTASSKGIGFGVARVL-ARAGADVILLSRNEEN   44 (263)
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            478999999987 57999999999 6889999999997543

>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=93.16  E-value=0.99  Score=39.96  Aligned_cols=65  Identities=15%  Similarity=0.192  Sum_probs=49.2

Q ss_pred             cCCCEEEEEcC---ChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCC
Q 026023          163 LKGQTVGVIGA---GRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (244)
Q Consensus       163 l~g~tvgIvG~---G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (244)
                      +.|.+|.++|=   +++..+++..+ ..||+ +|....|..-.. ++             .....+...+++++.++.+|
T Consensus       155 l~g~~va~vGD~~~~rv~~Sl~~~~-a~~g~~~v~~~~P~~~~p-~~-------------~~~~~~~~~~d~~ea~~~aD  219 (310)
T PRK13814        155 WNKLCVTIIGDIRHSRVANSLMDGL-VTMGVPEIRLVGPSSLLP-DK-------------VGNDSIKKFTELKPSLLNSD  219 (310)
T ss_pred             cCCcEEEEECCCCCCcHHHHHHHHH-HHcCCCEEEEeCCcccCc-Cc-------------cccceEEEEcCHHHHhCCCC
Confidence            78899999998   59999999997 79999 999999864221 11             00012334579999999999


Q ss_pred             EEEE
Q 026023          239 VVCT  242 (244)
Q Consensus       239 ~Vvl  242 (244)
                      +|..
T Consensus       220 vvy~  223 (310)
T PRK13814        220 VIVT  223 (310)
T ss_pred             EEEE
Confidence            9975

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=93.16  E-value=0.34  Score=42.31  Aligned_cols=40  Identities=18%  Similarity=0.169  Sum_probs=35.3

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcch
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~  201 (244)
                      ....|+++.|+|.|-.++.++--| .-.|+ +|..++|+...
T Consensus       122 ~~~~~~~vlilGAGGAarAv~~aL-~~~g~~~i~V~NRt~~r  162 (283)
T COG0169         122 VDVTGKRVLILGAGGAARAVAFAL-AEAGAKRITVVNRTRER  162 (283)
T ss_pred             cccCCCEEEEECCcHHHHHHHHHH-HHcCCCEEEEEeCCHHH
Confidence            346899999999999999999998 79996 79999998754

>PRK05872 short chain dehydrogenase; Provisional

Probab=93.15  E-value=0.24  Score=43.10  Aligned_cols=40  Identities=35%  Similarity=0.407  Sum_probs=34.9

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .++.|+++.|.|. |.||+.+|+.| ..-|++|+..+|+...
T Consensus         5 ~~l~gk~vlItGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~   45 (296)
T PRK05872          5 TSLAGKVVVVTGAARGIGAELARRL-HARGAKLALVDLEEAE   45 (296)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            4588999999986 78999999998 6899999999997643

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=93.14  E-value=0.12  Score=45.40  Aligned_cols=72  Identities=22%  Similarity=0.397  Sum_probs=51.9

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch--HHHHHHhhhhhhhhcCCCC-CccccccCCHHHHhhhC
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT--RLEKFVTAYGQFLKANGEQ-PVTWKRASSMDEVLREA  237 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ell~~s  237 (244)
                      ..+...+|.|+|.|-+|..-||. |-++|++|...|.+...  ..++.+          +.. ..-......+++.+.++
T Consensus       164 pGV~~~kv~iiGGGvvgtnaAki-A~glgA~Vtild~n~~rl~~ldd~f----------~~rv~~~~st~~~iee~v~~a  232 (371)
T COG0686         164 PGVLPAKVVVLGGGVVGTNAAKI-AIGLGADVTILDLNIDRLRQLDDLF----------GGRVHTLYSTPSNIEEAVKKA  232 (371)
T ss_pred             CCCCCccEEEECCccccchHHHH-HhccCCeeEEEecCHHHHhhhhHhh----------CceeEEEEcCHHHHHHHhhhc
Confidence            45777889999999999999999 59999999999998643  112211          111 11111334789999999


Q ss_pred             CEEEEe
Q 026023          238 DVVCTL  243 (244)
Q Consensus       238 D~Vvl~  243 (244)
                      |+|+-.
T Consensus       233 DlvIga  238 (371)
T COG0686         233 DLVIGA  238 (371)
T ss_pred             cEEEEE
Confidence            999854

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=93.13  E-value=0.12  Score=45.59  Aligned_cols=38  Identities=29%  Similarity=0.323  Sum_probs=34.8

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcch
Q 026023          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (244)
Q Consensus       163 l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~  201 (244)
                      =.|+|+.|+|+|.+|.+++.- |++.|+ +++++|-++.+
T Consensus       191 ~~GstvAVfGLG~VGLav~~G-aka~GAsrIIgvDiN~~K  229 (375)
T KOG0022|consen  191 EPGSTVAVFGLGGVGLAVAMG-AKAAGASRIIGVDINPDK  229 (375)
T ss_pred             CCCCEEEEEecchHHHHHHHh-HHhcCcccEEEEecCHHH
Confidence            378999999999999999999 599999 79999998765

>PLN02427 UDP-apiose/xylose synthase

Probab=93.12  E-value=0.19  Score=45.45  Aligned_cols=40  Identities=28%  Similarity=0.425  Sum_probs=33.2

Q ss_pred             ccccCCCEEEEEc-CChHHHHHHHHHhccC-CcEEEEEcCCcc
Q 026023          160 GNLLKGQTVGVIG-AGRIGSAYARMMVEGF-KMNLIYYDLYQA  200 (244)
Q Consensus       160 ~~~l~g~tvgIvG-~G~IG~~vA~~la~af-G~~V~~~~~~~~  200 (244)
                      +..+..++|.|.| .|-||+.+++.| ..- |.+|++++++..
T Consensus         9 ~~~~~~~~VlVTGgtGfIGs~lv~~L-~~~~g~~V~~l~r~~~   50 (386)
T PLN02427          9 GKPIKPLTICMIGAGGFIGSHLCEKL-MTETPHKVLALDVYND   50 (386)
T ss_pred             CCcccCcEEEEECCcchHHHHHHHHH-HhcCCCEEEEEecCch
Confidence            4567788999999 599999999998 565 589999998753

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=93.12  E-value=0.23  Score=35.82  Aligned_cols=64  Identities=20%  Similarity=0.212  Sum_probs=38.9

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcE-EEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhh--CCEEEE
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVVCT  242 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--sD~Vvl  242 (244)
                      .++.|+|+|+.|++++..+.+..|++ +..+|..++.-        |+     ....+++.  .+++++.+.  .|+-++
T Consensus         4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~--------G~-----~i~gipV~--~~~~~l~~~~~i~iaii   68 (96)
T PF02629_consen    4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKI--------GK-----EIGGIPVY--GSMDELEEFIEIDIAII   68 (96)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTT--------TS-----EETTEEEE--SSHHHHHHHCTTSEEEE
T ss_pred             CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCcc--------Cc-----EECCEEee--ccHHHhhhhhCCCEEEE
Confidence            47999999999998864333555554 45556555431        11     11122332  367777776  888887


Q ss_pred             eC
Q 026023          243 LC  244 (244)
Q Consensus       243 ~~  244 (244)
                      ++
T Consensus        69 ~V   70 (96)
T PF02629_consen   69 TV   70 (96)
T ss_dssp             ES
T ss_pred             Ec
Confidence            64

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=93.12  E-value=0.16  Score=39.96  Aligned_cols=31  Identities=29%  Similarity=0.478  Sum_probs=25.4

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcC
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDL  197 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~  197 (244)
                      +|||+|+|+||+.+++.+...-++++.+...
T Consensus         2 kv~I~G~GriGr~v~~~~~~~~~~~lvai~d   32 (149)
T smart00846        2 KVGINGFGRIGRLVLRALLERPDIEVVAIND   32 (149)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEeec
Confidence            6999999999999999864356788777554

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=93.09  E-value=0.092  Score=40.30  Aligned_cols=34  Identities=26%  Similarity=0.330  Sum_probs=29.2

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCc
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ  199 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~  199 (244)
                      .++|.|+|.|.+|.++|+.| ...|+ ++..+|+..
T Consensus         2 ~~~v~iiG~G~vGs~va~~L-~~~Gv~~i~lvD~d~   36 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNL-ARSGVGKITLVDDDI   36 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHH-HHHTTSEEEEEESSB
T ss_pred             CCEEEEECcCHHHHHHHHHH-HHhCCCceeecCCcc
Confidence            57999999999999999999 57798 799988764

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=93.09  E-value=0.27  Score=41.63  Aligned_cols=38  Identities=21%  Similarity=0.208  Sum_probs=32.3

Q ss_pred             ccCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       162 ~l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      .+.|+++.|.| .|.||+.+|+.| ...|++|+...++..
T Consensus         4 ~~~~k~~lItGa~~gIG~~ia~~l-~~~G~~vvi~~~~~~   42 (261)
T PRK08936          4 DLEGKVVVITGGSTGLGRAMAVRF-GKEKAKVVINYRSDE   42 (261)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHH-HHCCCEEEEEeCCCH
Confidence            47899999998 577999999999 689999988877543

>PRK12742 oxidoreductase; Provisional

Probab=93.09  E-value=0.41  Score=39.66  Aligned_cols=37  Identities=24%  Similarity=0.243  Sum_probs=31.5

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ  199 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~  199 (244)
                      .+.|+++.|.|. |.||+.+|+.| ...|++|+...++.
T Consensus         3 ~~~~k~vlItGasggIG~~~a~~l-~~~G~~v~~~~~~~   40 (237)
T PRK12742          3 AFTGKKVLVLGGSRGIGAAIVRRF-VTDGANVRFTYAGS   40 (237)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHH-HHCCCEEEEecCCC
Confidence            367899999995 89999999998 78999998876543

>PRK06125 short chain dehydrogenase; Provisional

Probab=93.06  E-value=0.31  Score=41.18  Aligned_cols=38  Identities=26%  Similarity=0.215  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      .+.|+++.|.|. |.||+.+++.| ..-|++|+..+|+..
T Consensus         4 ~~~~k~vlItG~~~giG~~ia~~l-~~~G~~V~~~~r~~~   42 (259)
T PRK06125          4 HLAGKRVLITGASKGIGAAAAEAF-AAEGCHLHLVARDAD   42 (259)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHH-HHcCCEEEEEeCCHH
Confidence            367899999998 68999999999 678999999998764

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=93.05  E-value=0.24  Score=41.54  Aligned_cols=38  Identities=29%  Similarity=0.327  Sum_probs=33.3

Q ss_pred             cCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          163 LKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       163 l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +.|+++.|.| .|.||+.+++.| ..-|.+|+..+|++.+
T Consensus         2 ~~~~~vlItG~sg~iG~~la~~l-~~~g~~v~~~~r~~~~   40 (258)
T PRK12429          2 LKGKVALVTGAASGIGLEIALAL-AKEGAKVVIADLNDEA   40 (258)
T ss_pred             CCCCEEEEECCCchHHHHHHHHH-HHCCCeEEEEeCCHHH
Confidence            4678999999 599999999998 6889999999998654

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=93.04  E-value=0.26  Score=43.57  Aligned_cols=75  Identities=21%  Similarity=0.196  Sum_probs=46.1

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      .++.|+|.|.||..++-+| .-.|..|+.+.|.++.  +++-. -|-.................-.+.+..+|+|++.+
T Consensus         1 mkI~IlGaGAvG~l~g~~L-~~~g~~V~~~~R~~~~--~~l~~-~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~v   75 (307)
T COG1893           1 MKILILGAGAIGSLLGARL-AKAGHDVTLLVRSRRL--EALKK-KGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTV   75 (307)
T ss_pred             CeEEEECCcHHHHHHHHHH-HhCCCeEEEEecHHHH--HHHHh-CCeEEecCCCccccccccccChhhcCCCCEEEEEe
Confidence            3799999999999999999 6777888888887652  22111 12111111111011112234456677999999874

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.04  E-value=0.38  Score=40.93  Aligned_cols=38  Identities=21%  Similarity=0.249  Sum_probs=32.4

Q ss_pred             cccCCCEEEEEcCCh---HHHHHHHHHhccCCcEEEEEcCCc
Q 026023          161 NLLKGQTVGVIGAGR---IGSAYARMMVEGFKMNLIYYDLYQ  199 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~---IG~~vA~~la~afG~~V~~~~~~~  199 (244)
                      ..+.||++.|.|.++   ||+++|+.| ..-|++|+..+|+.
T Consensus         4 ~~~~~k~~lITGas~~~GIG~a~a~~l-a~~G~~v~~~~r~~   44 (260)
T PRK06603          4 GLLQGKKGLITGIANNMSISWAIAQLA-KKHGAELWFTYQSE   44 (260)
T ss_pred             cccCCcEEEEECCCCCcchHHHHHHHH-HHcCCEEEEEeCch
Confidence            357899999999974   999999998 57899999888763

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=93.02  E-value=0.32  Score=44.40  Aligned_cols=63  Identities=14%  Similarity=0.126  Sum_probs=50.2

Q ss_pred             cCCCEEEEEcCC----------hHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHH
Q 026023          163 LKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE  232 (244)
Q Consensus       163 l~g~tvgIvG~G----------~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e  232 (244)
                      ..|++|+|+|+.          .-+..+++.| ..-|++|.+|||..... .                .+.....+++++
T Consensus       294 ~~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L-~~~G~~v~~~DP~~~~~-~----------------~~~~~~~~~~~~  355 (388)
T PRK15057        294 RKPQVVGIYRLIMKSGSDNFRASSIQGIMKRI-KAKGVEVIIYEPVMKED-S----------------FFNSRLERDLAT  355 (388)
T ss_pred             hcCCEEEEEcceeCCCCCccccChHHHHHHHH-HhCCCEEEEECCCCCch-h----------------hcCCeeeCCHHH
Confidence            478999999994          5577899999 89999999999985431 1                113446689999


Q ss_pred             HhhhCCEEEEe
Q 026023          233 VLREADVVCTL  243 (244)
Q Consensus       233 ll~~sD~Vvl~  243 (244)
                      .++.||.|++.
T Consensus       356 ~~~~~~~~~~~  366 (388)
T PRK15057        356 FKQQADVIISN  366 (388)
T ss_pred             HHHhCCEEEEc
Confidence            99999999874

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=93.02  E-value=0.32  Score=47.95  Aligned_cols=36  Identities=22%  Similarity=0.353  Sum_probs=31.6

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ++|+|||.|.+|..+|..++..-|++|..+|+++..
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~  345 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQG  345 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHH
Confidence            689999999999999999743679999999998753

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.02  E-value=0.23  Score=42.75  Aligned_cols=36  Identities=19%  Similarity=0.236  Sum_probs=31.8

Q ss_pred             cCCCEEEEEcCC---hHHHHHHHHHhccCCcEEEEEcCCc
Q 026023          163 LKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQ  199 (244)
Q Consensus       163 l~g~tvgIvG~G---~IG~~vA~~la~afG~~V~~~~~~~  199 (244)
                      +.||++.|.|.+   .||+++|+.| ..-|++|+..+|+.
T Consensus         3 l~~k~~lItGas~~~GIG~aiA~~l-a~~G~~Vil~~r~~   41 (274)
T PRK08415          3 MKGKKGLIVGVANNKSIAYGIAKAC-FEQGAELAFTYLNE   41 (274)
T ss_pred             cCCcEEEEECCCCCCCHHHHHHHHH-HHCCCEEEEEecCH
Confidence            578999999984   7999999999 57899999998874

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=92.98  E-value=0.14  Score=37.89  Aligned_cols=33  Identities=27%  Similarity=0.389  Sum_probs=28.2

Q ss_pred             EEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       168 vgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +.|+|+|++|+.+++.| +..+.+|..+++.+..
T Consensus         1 vvI~G~g~~~~~i~~~L-~~~~~~vvvid~d~~~   33 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQL-KEGGIDVVVIDRDPER   33 (116)
T ss_dssp             EEEES-SHHHHHHHHHH-HHTTSEEEEEESSHHH
T ss_pred             eEEEcCCHHHHHHHHHH-HhCCCEEEEEECCcHH
Confidence            56999999999999999 7877799999998754

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=92.98  E-value=0.38  Score=42.85  Aligned_cols=72  Identities=18%  Similarity=0.123  Sum_probs=43.9

Q ss_pred             EEEEEcC-ChHHHHHHHHHhccCCc-------EEEEEcCCcch--HHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhh
Q 026023          167 TVGVIGA-GRIGSAYARMMVEGFKM-------NLIYYDLYQAT--RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (244)
Q Consensus       167 tvgIvG~-G~IG~~vA~~la~afG~-------~V~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  236 (244)
                      +|+|+|. |.+|..+|-.| ...|.       ++..+|.....  ....-.|.... .... ......  ..+..+-+++
T Consensus         5 KV~IIGa~G~VG~~~a~~l-~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~-~~~~-~~~~~i--~~~~~~~~~d   79 (323)
T TIGR01759         5 RVAVTGAAGQIGYSLLFRI-ASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDC-AFPL-LAGVVA--TTDPEEAFKD   79 (323)
T ss_pred             EEEEECCCcHHHHHHHHHH-HhCCcccCCCccEEEEEecCCcccccchHHHHHhhc-cccc-cCCcEE--ecChHHHhCC
Confidence            7999998 99999999987 55564       79999985421  11111111000 0000 001111  1467899999


Q ss_pred             CCEEEEe
Q 026023          237 ADVVCTL  243 (244)
Q Consensus       237 sD~Vvl~  243 (244)
                      ||+|+++
T Consensus        80 aDvVVit   86 (323)
T TIGR01759        80 VDAALLV   86 (323)
T ss_pred             CCEEEEe
Confidence            9999986

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.98  E-value=0.31  Score=40.49  Aligned_cols=39  Identities=28%  Similarity=0.399  Sum_probs=32.9

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEE-cCCcch
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYY-DLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~-~~~~~~  201 (244)
                      ++.++++.|.|. |.||+.+++.| ..-|++|+.. +|+...
T Consensus         2 ~~~~~~ilI~Gasg~iG~~la~~l-~~~g~~v~~~~~r~~~~   42 (247)
T PRK05565          2 KLMGKVAIVTGASGGIGRAIAELL-AKEGAKVVIAYDINEEA   42 (247)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEcCCCHHH
Confidence            367889999985 89999999998 5779999988 887543

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=92.94  E-value=0.34  Score=42.22  Aligned_cols=76  Identities=16%  Similarity=0.055  Sum_probs=46.4

Q ss_pred             CCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhh-cCCC--CCccccccCCHHHHhhhCCE
Q 026023          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK-ANGE--QPVTWKRASSMDEVLREADV  239 (244)
Q Consensus       164 ~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~l~ell~~sD~  239 (244)
                      .|+++.|.| .|-||+.+++.| ..-|.+|.+++|+..... .... ...... ....  ..........++++++.+|+
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L-~~~g~~V~~~~r~~~~~~-~~~~-~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~   79 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLL-LQRGYTVKATVRDPNDPK-KTEH-LLALDGAKERLHLFKANLLEEGSFDSVVDGCEG   79 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHH-HHCCCEEEEEEcCCCchh-hHHH-HHhccCCCCceEEEeccccCcchHHHHHcCCCE
Confidence            468999999 699999999998 788999999888654211 1000 000000 0000  01122233468888999998


Q ss_pred             EEE
Q 026023          240 VCT  242 (244)
Q Consensus       240 Vvl  242 (244)
                      |+-
T Consensus        80 Vih   82 (322)
T PLN02662         80 VFH   82 (322)
T ss_pred             EEE
Confidence            764

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=92.92  E-value=0.93  Score=39.46  Aligned_cols=89  Identities=27%  Similarity=0.346  Sum_probs=59.0

Q ss_pred             hHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHhccC----Cc-------E
Q 026023          123 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF----KM-------N  191 (244)
Q Consensus       123 vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~IG~~vA~~la~af----G~-------~  191 (244)
                      +|=-+++-+|+.+|-                     .+..|..+++.|+|.|.-|-.+|++| ...    |+       +
T Consensus         4 Ta~V~lAgllnAlk~---------------------~g~~l~d~~iv~~GAGsAg~gia~ll-~~~~~~~G~~~eeA~~~   61 (279)
T cd05312           4 TAAVALAGLLAALRI---------------------TGKPLSDQRILFLGAGSAGIGIADLI-VSAMVREGLSEEEARKK   61 (279)
T ss_pred             HHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECcCHHHHHHHHHH-HHHHHHcCCChhhccCe
Confidence            455667777776654                     23568899999999999999999998 566    77       7


Q ss_pred             EEEEcCCcc-----hHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--hCCEEE
Q 026023          192 LIYYDLYQA-----TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVVC  241 (244)
Q Consensus       192 V~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sD~Vv  241 (244)
                      +..+|+..-     +...++-..|   .+. ...    ....+|.|+++  ..|+++
T Consensus        62 i~~vD~~Gll~~~r~~l~~~~~~~---a~~-~~~----~~~~~L~e~i~~v~ptvlI  110 (279)
T cd05312          62 IWLVDSKGLLTKDRKDLTPFKKPF---ARK-DEE----KEGKSLLEVVKAVKPTVLI  110 (279)
T ss_pred             EEEEcCCCeEeCCCCcchHHHHHH---Hhh-cCc----ccCCCHHHHHHhcCCCEEE
Confidence            999998741     1111111111   111 110    12368999999  889886

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=92.90  E-value=0.36  Score=43.35  Aligned_cols=73  Identities=18%  Similarity=0.311  Sum_probs=41.5

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhccC-CcEEEEE-cCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          166 QTVGVIGA-GRIGSAYARMMVEGF-KMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       166 ~tvgIvG~-G~IG~~vA~~la~af-G~~V~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      .+|+|+|. |.+|+++++.| ..+ +.++.+. +++.... +...+.|...   .......+.. .+.++++.++|+|++
T Consensus         1 ~kVaIiGATG~vG~ellr~L-~~hP~~el~~l~~s~~sag-k~~~~~~~~l---~~~~~~~~~~-~~~~~~~~~~DvVf~   74 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLL-LNHPEVEITYLVSSRESAG-KPVSEVHPHL---RGLVDLNLEP-IDEEEIAEDADVVFL   74 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHH-HcCCCceEEEEeccchhcC-CChHHhCccc---cccCCceeec-CCHHHhhcCCCEEEE
Confidence            37999998 99999999999 566 7787743 5443110 1110111000   0000111111 256677778999998


Q ss_pred             eC
Q 026023          243 LC  244 (244)
Q Consensus       243 ~~  244 (244)
                      ++
T Consensus        75 al   76 (346)
T TIGR01850        75 AL   76 (346)
T ss_pred             CC
Confidence            74

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=92.90  E-value=0.25  Score=44.03  Aligned_cols=40  Identities=23%  Similarity=0.104  Sum_probs=34.7

Q ss_pred             ccccCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          160 GNLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       160 ~~~l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      +++..+++|.|.| .|-||+.+++.| ..-|.+|++.+|+..
T Consensus         5 ~~~~~~~~vLVtG~~GfIG~~l~~~L-~~~G~~V~~~~r~~~   45 (353)
T PLN02896          5 GRESATGTYCVTGATGYIGSWLVKLL-LQRGYTVHATLRDPA   45 (353)
T ss_pred             ccccCCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCChH
Confidence            4677899999999 599999999998 678999999888754

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=92.87  E-value=0.39  Score=40.77  Aligned_cols=37  Identities=22%  Similarity=0.302  Sum_probs=32.6

Q ss_pred             ccCCCEEEEEcC---ChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQ  199 (244)
Q Consensus       162 ~l~g~tvgIvG~---G~IG~~vA~~la~afG~~V~~~~~~~  199 (244)
                      .+.||++.|.|.   +.||+++|+.| ..-|++|+..+|+.
T Consensus         4 ~~~~k~~lItGa~~s~GIG~a~a~~l-a~~G~~v~l~~r~~   43 (256)
T PRK07889          4 LLEGKRILVTGVITDSSIAFHVARVA-QEQGAEVVLTGFGR   43 (256)
T ss_pred             cccCCEEEEeCCCCcchHHHHHHHHH-HHCCCEEEEecCcc
Confidence            378999999996   68999999999 68999999998765

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=92.87  E-value=0.2  Score=49.51  Aligned_cols=35  Identities=29%  Similarity=0.431  Sum_probs=31.4

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ++|+|||.|.+|..+|..++ .-|++|..+|+++..
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a-~~G~~V~l~d~~~~~  370 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSV-DKGLKTVLKDATPAG  370 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHH-hCCCcEEEecCCHHH
Confidence            58999999999999999984 669999999998754

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK07060 short chain dehydrogenase; Provisional

Probab=92.84  E-value=0.3  Score=40.60  Aligned_cols=39  Identities=26%  Similarity=0.227  Sum_probs=34.3

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .+.|+++.|.|. |.||+.+++.| ..-|.+|+.++|+...
T Consensus         6 ~~~~~~~lItGa~g~iG~~~a~~l-~~~g~~V~~~~r~~~~   45 (245)
T PRK07060          6 DFSGKSVLVTGASSGIGRACAVAL-AQRGARVVAAARNAAA   45 (245)
T ss_pred             ccCCCEEEEeCCcchHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            478899999998 89999999998 6789999999998643

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=92.83  E-value=0.16  Score=42.00  Aligned_cols=37  Identities=30%  Similarity=0.384  Sum_probs=33.4

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCC
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY  198 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~  198 (244)
                      ..|..++|+|+|.|.+|..+|+.| ...|. ++..+|+.
T Consensus        17 ~~L~~~~V~IvG~GglGs~ia~~L-a~~Gvg~i~lvD~D   54 (200)
T TIGR02354        17 QKLEQATVAICGLGGLGSNVAINL-ARAGIGKLILVDFD   54 (200)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHH-HHcCCCEEEEECCC
Confidence            458899999999999999999999 57899 69999987

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.83  E-value=0.33  Score=40.34  Aligned_cols=39  Identities=21%  Similarity=0.203  Sum_probs=32.9

Q ss_pred             ccCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .+.++++.|.| .|.||+.+++.| ..-|++|+..+|++.+
T Consensus         4 ~~~~~~vlVtG~sg~iG~~l~~~L-~~~G~~Vi~~~r~~~~   43 (239)
T PRK07666          4 SLQGKNALITGAGRGIGRAVAIAL-AKEGVNVGLLARTEEN   43 (239)
T ss_pred             cCCCCEEEEEcCCchHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            35678999998 568999999998 6889999999998643

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=92.83  E-value=0.21  Score=37.53  Aligned_cols=59  Identities=15%  Similarity=0.223  Sum_probs=42.0

Q ss_pred             CEEEEEc----CChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023          166 QTVGVIG----AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC  241 (244)
Q Consensus       166 ~tvgIvG----~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv  241 (244)
                      |++.|+|    -++.|..+.+.| +..|.+|+.+++...+  .                 .+..-+.++.|.-...|.++
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l-~~~G~~v~~Vnp~~~~--i-----------------~G~~~y~sl~e~p~~iDlav   60 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNL-KAAGYEVYPVNPKGGE--I-----------------LGIKCYPSLAEIPEPIDLAV   60 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHH-HHTT-EEEEESTTCSE--E-----------------TTEE-BSSGGGCSST-SEEE
T ss_pred             CEEEEEcccCCCCChHHHHHHHH-HhCCCEEEEECCCceE--E-----------------CcEEeeccccCCCCCCCEEE
Confidence            5899999    789999999998 8899999999998754  1                 11223467887447888888


Q ss_pred             EeC
Q 026023          242 TLC  244 (244)
Q Consensus       242 l~~  244 (244)
                      +.+
T Consensus        61 v~~   63 (116)
T PF13380_consen   61 VCV   63 (116)
T ss_dssp             E-S
T ss_pred             EEc
Confidence            753

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=92.80  E-value=0.31  Score=43.02  Aligned_cols=33  Identities=30%  Similarity=0.430  Sum_probs=27.3

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhccCCc--EEEEEcCCc
Q 026023          166 QTVGVIGA-GRIGSAYARMMVEGFKM--NLIYYDLYQ  199 (244)
Q Consensus       166 ~tvgIvG~-G~IG~~vA~~la~afG~--~V~~~~~~~  199 (244)
                      .+|+|+|. |.+|..++..| ...|.  +|..+|+..
T Consensus         1 ~kI~IiGatG~vG~~~a~~l-~~~g~~~~v~lvd~~~   36 (309)
T cd05294           1 MKVSIIGASGRVGSATALLL-AKEDVVKEINLISRPK   36 (309)
T ss_pred             CEEEEECCCChHHHHHHHHH-HhCCCCCEEEEEECcc
Confidence            37999997 99999999997 46565  599999854

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=92.80  E-value=0.32  Score=41.77  Aligned_cols=36  Identities=17%  Similarity=0.170  Sum_probs=31.5

Q ss_pred             ccCCCEEEEEcC---ChHHHHHHHHHhccCCcEEEEEcCC
Q 026023          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLY  198 (244)
Q Consensus       162 ~l~g~tvgIvG~---G~IG~~vA~~la~afG~~V~~~~~~  198 (244)
                      -+.||++.|.|.   +.||+++|+.| ..-|++|+...|+
T Consensus         7 ~~~~k~~lItGas~~~GIG~aia~~l-a~~G~~V~l~~r~   45 (272)
T PRK08159          7 LMAGKRGLILGVANNRSIAWGIAKAC-RAAGAELAFTYQG   45 (272)
T ss_pred             cccCCEEEEECCCCCCcHHHHHHHHH-HHCCCEEEEEcCc
Confidence            468899999998   47999999999 6899999888765

>PRK06398 aldose dehydrogenase; Validated

Probab=92.80  E-value=0.23  Score=42.16  Aligned_cols=38  Identities=26%  Similarity=0.318  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      ++.||++.|.|. |.||+.+|+.| ..-|++|+..+|+..
T Consensus         3 ~l~gk~vlItGas~gIG~~ia~~l-~~~G~~Vi~~~r~~~   41 (258)
T PRK06398          3 GLKDKVAIVTGGSQGIGKAVVNRL-KEEGSNVINFDIKEP   41 (258)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHH-HHCCCeEEEEeCCcc
Confidence            478999999995 68999999999 789999999998754

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=92.79  E-value=0.38  Score=40.92  Aligned_cols=35  Identities=17%  Similarity=0.248  Sum_probs=30.7

Q ss_pred             cCCCEEEEEcC---ChHHHHHHHHHhccCCcEEEEEcCC
Q 026023          163 LKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLY  198 (244)
Q Consensus       163 l~g~tvgIvG~---G~IG~~vA~~la~afG~~V~~~~~~  198 (244)
                      +.||++.|-|.   +.||+++|+.| ...|++|+...+.
T Consensus         4 ~~~k~~lITGa~~~~GIG~a~a~~l-~~~G~~v~~~~~~   41 (261)
T PRK08690          4 LQGKKILITGMISERSIAYGIAKAC-REQGAELAFTYVV   41 (261)
T ss_pred             cCCcEEEEECCCCCCcHHHHHHHHH-HHCCCEEEEEcCc
Confidence            78999999994   57999999999 6899999988765

>PRK08303 short chain dehydrogenase; Provisional

Probab=92.76  E-value=0.34  Score=42.54  Aligned_cols=38  Identities=18%  Similarity=0.136  Sum_probs=33.1

Q ss_pred             cccCCCEEEEEcCC-hHHHHHHHHHhccCCcEEEEEcCCc
Q 026023          161 NLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQ  199 (244)
Q Consensus       161 ~~l~g~tvgIvG~G-~IG~~vA~~la~afG~~V~~~~~~~  199 (244)
                      .++.||++.|.|.+ .||+++|+.| ..-|++|+..+|+.
T Consensus         4 ~~l~~k~~lITGgs~GIG~aia~~l-a~~G~~Vv~~~r~~   42 (305)
T PRK08303          4 KPLRGKVALVAGATRGAGRGIAVEL-GAAGATVYVTGRST   42 (305)
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEeccc
Confidence            35789999999985 6999999999 68999999998874

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=92.71  E-value=0.32  Score=41.11  Aligned_cols=36  Identities=22%  Similarity=0.336  Sum_probs=32.1

Q ss_pred             cCCCEEEEEcCC---hHHHHHHHHHhccCCcEEEEEcCCc
Q 026023          163 LKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQ  199 (244)
Q Consensus       163 l~g~tvgIvG~G---~IG~~vA~~la~afG~~V~~~~~~~  199 (244)
                      +.||++.|.|.+   .||+++|+.| ..-|++|+..+|+.
T Consensus         5 l~~k~~lItGas~~~gIG~a~a~~l-a~~G~~Vi~~~r~~   43 (252)
T PRK06079          5 LSGKKIVVMGVANKRSIAWGCAQAI-KDQGATVIYTYQND   43 (252)
T ss_pred             cCCCEEEEeCCCCCCchHHHHHHHH-HHCCCEEEEecCch
Confidence            789999999986   7999999999 57899999998863

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=92.71  E-value=0.37  Score=41.03  Aligned_cols=35  Identities=17%  Similarity=0.188  Sum_probs=30.3

Q ss_pred             cCCCEEEEEcC---ChHHHHHHHHHhccCCcEEEEEcCC
Q 026023          163 LKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLY  198 (244)
Q Consensus       163 l~g~tvgIvG~---G~IG~~vA~~la~afG~~V~~~~~~  198 (244)
                      +.||++.|.|.   +.||+++|+.| ..-|++|+..++.
T Consensus         4 l~~k~vlItGas~~~GIG~a~a~~l-~~~G~~v~~~~~~   41 (260)
T PRK06997          4 LAGKRILITGLLSNRSIAYGIAKAC-KREGAELAFTYVG   41 (260)
T ss_pred             cCCcEEEEeCCCCCCcHHHHHHHHH-HHCCCeEEEEccc
Confidence            67899999994   58999999999 6899999887654

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=92.69  E-value=0.27  Score=41.55  Aligned_cols=38  Identities=16%  Similarity=0.195  Sum_probs=32.7

Q ss_pred             ccCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       162 ~l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      ++.||++.|.| .|.||+.+|++| ..-|++|+.++++..
T Consensus         5 ~l~~k~~lItGas~gIG~aia~~l-~~~G~~vv~~~~~~~   43 (251)
T PRK12481          5 DLNGKVAIITGCNTGLGQGMAIGL-AKAGADIVGVGVAEA   43 (251)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEecCchH
Confidence            47899999998 578999999999 689999999988653

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=92.66  E-value=0.16  Score=45.81  Aligned_cols=35  Identities=26%  Similarity=0.266  Sum_probs=31.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ  199 (244)
Q Consensus       164 ~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~  199 (244)
                      .+++|.|.|. |.||+.+++.| ..-|.+|++++|..
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L-~~~G~~V~~v~r~~   55 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRL-KAEGHYIIASDWKK   55 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHH-HhCCCEEEEEEecc
Confidence            6689999997 99999999998 78899999999864

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=92.65  E-value=0.13  Score=49.56  Aligned_cols=36  Identities=22%  Similarity=0.364  Sum_probs=32.4

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ...+.|+|+|++|+.+++.| +..|.+++..|.+++.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L-~~~g~~vvvID~d~~~  435 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLL-MANKMRITVLERDISA  435 (601)
T ss_pred             cCCEEEecCchHHHHHHHHH-HhCCCCEEEEECCHHH
Confidence            35699999999999999999 8999999999998754

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=92.62  E-value=0.26  Score=48.60  Aligned_cols=35  Identities=26%  Similarity=0.366  Sum_probs=31.6

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ++|+|||.|..|..+|..+| .-|.+|..+|++...
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a-~~G~~V~l~d~~~~~  348 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSA-SKGVPVIMKDINQKA  348 (715)
T ss_pred             ceEEEECCchhHHHHHHHHH-hCCCeEEEEeCCHHH
Confidence            68999999999999999985 669999999999754

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=92.56  E-value=0.24  Score=48.76  Aligned_cols=35  Identities=23%  Similarity=0.351  Sum_probs=31.5

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ++|+|||.|.+|..+|..+| .-|++|..+|+++..
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a-~~G~~V~l~d~~~~~  348 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSA-SKGTPIVMKDINQHS  348 (714)
T ss_pred             ceEEEECCchHHHHHHHHHH-hCCCeEEEEeCCHHH
Confidence            58999999999999999985 669999999998754

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK07454 short chain dehydrogenase; Provisional

Probab=92.56  E-value=0.35  Score=40.24  Aligned_cols=37  Identities=22%  Similarity=0.115  Sum_probs=32.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .+|++.|.|. |.||+.+++.| ..-|++|+.++|++.+
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l-~~~G~~V~~~~r~~~~   42 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAF-AKAGWDLALVARSQDA   42 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            4678999985 99999999998 6789999999998654

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=92.55  E-value=0.45  Score=39.40  Aligned_cols=38  Identities=26%  Similarity=0.286  Sum_probs=31.3

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       163 l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +.++++.|.|. |.||+.+++.| ..-|.+|+...++..+
T Consensus         3 ~~~~~vlItG~sg~iG~~l~~~l-~~~G~~v~~~~~~~~~   41 (248)
T PRK05557          3 LEGKVALVTGASRGIGRAIAERL-AAQGANVVINYASSEA   41 (248)
T ss_pred             CCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCchh
Confidence            57789999985 89999999998 5779999777776543

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.55  E-value=0.43  Score=44.07  Aligned_cols=37  Identities=19%  Similarity=0.405  Sum_probs=30.9

Q ss_pred             cCC-CEEEEEcCChHHHHHHHHHhccC--CcEEEEEcCCcc
Q 026023          163 LKG-QTVGVIGAGRIGSAYARMMVEGF--KMNLIYYDLYQA  200 (244)
Q Consensus       163 l~g-~tvgIvG~G~IG~~vA~~la~af--G~~V~~~~~~~~  200 (244)
                      +.+ +++.|+|+|.+|...++.| ...  |++|.++|....
T Consensus         4 ~~~~~~v~viG~G~sG~s~~~~l-~~~~~~~~v~~~D~~~~   43 (438)
T PRK04663          4 WQGIKNVVVVGLGITGLSVVKHL-RKYQPQLTVKVIDTRET   43 (438)
T ss_pred             ccCCceEEEEeccHHHHHHHHHH-HhcCCCCeEEEEeCCCC
Confidence            455 7899999999999999998 455  489999997653

>PRK06139 short chain dehydrogenase; Provisional

Probab=92.54  E-value=0.26  Score=43.86  Aligned_cols=39  Identities=26%  Similarity=0.266  Sum_probs=34.4

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .+.++++.|.|. |.||+.+|+.| ..-|++|+..+|+...
T Consensus         4 ~l~~k~vlITGAs~GIG~aia~~l-a~~G~~Vvl~~R~~~~   43 (330)
T PRK06139          4 PLHGAVVVITGASSGIGQATAEAF-ARRGARLVLAARDEEA   43 (330)
T ss_pred             CCCCCEEEEcCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            478899999998 78999999998 6899999999998643

>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed

Probab=92.53  E-value=1.8  Score=36.06  Aligned_cols=146  Identities=19%  Similarity=0.074  Sum_probs=78.2

Q ss_pred             CeEEEEeCCCCc-hHHHHHHHhCCCeEEEeccCCC---CCCH-HHHHHHhcCCccEEEeccCccccHHHHHHhh-----c
Q 026023           15 KYRVVSTKPMPG-TRWINLLIEQDCRVEICTQKKT---ILSV-EDIIALIGDKCDGVIGQLTEDWGETLFAALS-----R   84 (244)
Q Consensus        15 ~~~ilv~~~~~~-~~~~~~l~~~~~~v~~~~~~~~---~~~~-~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p-----~   84 (244)
                      ||+|+++.+-+. ..+.+.|++.|.++...+.-+.   ..+. ......+. .+|.++..+...+ ..+++.+.     .
T Consensus         1 ~~~ilitr~~~~~~~l~~~l~~~G~~v~~~p~~~~~~~~~~~~~~~~~~~~-~~d~iiftS~~av-~~~~~~~~~~~~~~   78 (249)
T PRK05928          1 MMKILVTRPSPKAEELVELLRELGFVALHFPLIEIEPGRQLPQLAAQLAAL-GADWVIFTSKNAV-EFLLSALKKKKLKW   78 (249)
T ss_pred             CCEEEEeCCHHHHHHHHHHHHHcCCCEEEeccEEEecCCCcChHHHHhhCC-CCCEEEEECHHHH-HHHHHHHHhcCcCC
Confidence            488999987543 3566778888888765432211   1111 12223344 4887665432111 12233222     1


Q ss_pred             cCCcEEEEcccCCCccChHHHhhCCcEEEecCC-CCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCccccccc
Q 026023           85 AGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPG-VLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLL  163 (244)
Q Consensus        85 l~~k~I~~~~aG~d~id~~~~~~~gI~v~n~~~-~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l  163 (244)
                      +  +-....+.|-.  -..++++.|+.....|. .++...++..    ..                           ..+
T Consensus        79 ~--~~~~~~avG~~--Ta~~l~~~G~~~~~~~~~~~~~~l~~~l----~~---------------------------~~~  123 (249)
T PRK05928         79 P--KNKKYAAIGEK--TALALKKLGGKVVFVPEDGESSELLLEL----PE---------------------------LLL  123 (249)
T ss_pred             C--CCCEEEEECHH--HHHHHHHcCCCccccCCCCcChHHHHhC----hh---------------------------hhc
Confidence            1  11222233321  24566678887655443 2222222211    00                           115


Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCC
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~  198 (244)
                      .|+++.+..-......+.+.| +..|.+|..+.-+
T Consensus       124 ~~~~ili~~~~~~~~~l~~~L-~~~G~~v~~~~~Y  157 (249)
T PRK05928        124 KGKRVLYLRGNGGREVLGDTL-EERGAEVDECEVY  157 (249)
T ss_pred             CCCEEEEECCCCCHHHHHHHH-HHCCCEEeEEEEE
Confidence            788999998888888899998 8999887765544

>PRK07825 short chain dehydrogenase; Provisional

Probab=92.53  E-value=0.32  Score=41.45  Aligned_cols=39  Identities=31%  Similarity=0.399  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ++.|+++.|.|. |.||+.+++.| ..-|++|+..+|++..
T Consensus         2 ~~~~~~ilVtGasggiG~~la~~l-~~~G~~v~~~~r~~~~   41 (273)
T PRK07825          2 DLRGKVVAITGGARGIGLATARAL-AALGARVAIGDLDEAL   41 (273)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            367889999986 88999999998 6789999999987643

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=92.51  E-value=0.36  Score=41.44  Aligned_cols=36  Identities=14%  Similarity=0.203  Sum_probs=32.3

Q ss_pred             cCCCEEEEEcCC---hHHHHHHHHHhccCCcEEEEEcCCc
Q 026023          163 LKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQ  199 (244)
Q Consensus       163 l~g~tvgIvG~G---~IG~~vA~~la~afG~~V~~~~~~~  199 (244)
                      +.||++.|.|.+   .||+++|+.| ..-|++|..++|+.
T Consensus         5 l~~k~~lVTGas~~~GIG~aiA~~l-a~~Ga~V~~~~r~~   43 (271)
T PRK06505          5 MQGKRGLIMGVANDHSIAWGIAKQL-AAQGAELAFTYQGE   43 (271)
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHH-HhCCCEEEEecCch
Confidence            689999999998   6999999999 68999999998764

>PRK10206 putative oxidoreductase; Provisional

Probab=92.51  E-value=0.46  Score=42.55  Aligned_cols=65  Identities=17%  Similarity=0.226  Sum_probs=39.7

Q ss_pred             EEEEEcCChHHHH-HHHHHhcc-CCcEEEE-EcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--hCCEEE
Q 026023          167 TVGVIGAGRIGSA-YARMMVEG-FKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVVC  241 (244)
Q Consensus       167 tvgIvG~G~IG~~-vA~~la~a-fG~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sD~Vv  241 (244)
                      ++||||+|.|++. .+..+... =+++|.+ +|+.+..  +++.+.|       +    ....+++++++|+  +.|+|+
T Consensus         3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~--~~~~~~~-------~----~~~~~~~~~ell~~~~iD~V~   69 (344)
T PRK10206          3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKP--EEQAPIY-------S----HIHFTSDLDEVLNDPDVKLVV   69 (344)
T ss_pred             EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhH--HHHHHhc-------C----CCcccCCHHHHhcCCCCCEEE
Confidence            7999999999864 34433122 3688765 6766432  2222222       1    1223578999996  568898


Q ss_pred             EeC
Q 026023          242 TLC  244 (244)
Q Consensus       242 l~~  244 (244)
                      +++
T Consensus        70 I~t   72 (344)
T PRK10206         70 VCT   72 (344)
T ss_pred             EeC
Confidence            864

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=92.50  E-value=0.38  Score=41.05  Aligned_cols=39  Identities=26%  Similarity=0.333  Sum_probs=34.2

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      ..+.++++.|.|. |.||+.+++.| ..-|++|..++|+..
T Consensus         6 ~~~~~k~vlVtGas~giG~~ia~~l-~~~G~~V~~~~r~~~   45 (278)
T PRK08277          6 FSLKGKVAVITGGGGVLGGAMAKEL-ARAGAKVAILDRNQE   45 (278)
T ss_pred             eccCCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEeCCHH
Confidence            3578999999996 89999999999 688999999999754

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=92.49  E-value=0.21  Score=44.42  Aligned_cols=72  Identities=21%  Similarity=0.140  Sum_probs=42.6

Q ss_pred             EEEEEcC-ChHHHHHHHHHhccCCc-------EEEEEcCCcchHHHHH--HhhhhhhhhcCCCCCccccccCCHHHHhhh
Q 026023          167 TVGVIGA-GRIGSAYARMMVEGFKM-------NLIYYDLYQATRLEKF--VTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (244)
Q Consensus       167 tvgIvG~-G~IG~~vA~~la~afG~-------~V~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  236 (244)
                      +|+|+|. |+||..+|-.| ...|.       .+..+|..+..+..+.  .|..    ..............+..+.+++
T Consensus         1 ~V~IiGaaG~VG~~~a~~l-~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~----d~~~~~~~~~~~~~~~~~~~~~   75 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMI-ARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELM----DCAFPLLDGVVPTHDPAVAFTD   75 (324)
T ss_pred             CEEEECCCcHHHHHHHHHH-HhccccCCCCccEEEEEecCCcccccceeEeehh----cccchhcCceeccCChHHHhCC
Confidence            5899999 99999999987 55444       5889998543210110  0000    0000000111122366899999


Q ss_pred             CCEEEEe
Q 026023          237 ADVVCTL  243 (244)
Q Consensus       237 sD~Vvl~  243 (244)
                      ||+|++.
T Consensus        76 aDiVVit   82 (324)
T TIGR01758        76 VDVAILV   82 (324)
T ss_pred             CCEEEEc
Confidence            9999975

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>PRK06196 oxidoreductase; Provisional

Probab=92.49  E-value=0.41  Score=41.92  Aligned_cols=39  Identities=21%  Similarity=0.184  Sum_probs=34.1

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .+.|+++.|.|. |.||+.+++.| ..-|++|+..+|+...
T Consensus        23 ~l~~k~vlITGasggIG~~~a~~L-~~~G~~Vv~~~R~~~~   62 (315)
T PRK06196         23 DLSGKTAIVTGGYSGLGLETTRAL-AQAGAHVIVPARRPDV   62 (315)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            478899999997 78999999999 6889999999998643

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=92.45  E-value=0.47  Score=42.03  Aligned_cols=37  Identities=22%  Similarity=0.366  Sum_probs=32.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcch
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~  201 (244)
                      .|++|.|.|.|.+|...++.+ +..|+ +|+++++++..
T Consensus       169 ~g~~VlV~G~G~vG~~aiqla-k~~G~~~Vi~~~~~~~~  206 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAV-KTLGAAEIVCADVSPRS  206 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCcEEEEEeCCHHH
Confidence            588999999999999999995 99999 68889887643

>PRK07856 short chain dehydrogenase; Provisional

Probab=92.43  E-value=0.23  Score=41.84  Aligned_cols=38  Identities=24%  Similarity=0.249  Sum_probs=33.0

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      ++.||++.|.|. |.||+.+++.| ..-|.+|+..+|+..
T Consensus         3 ~~~~k~~lItGas~gIG~~la~~l-~~~g~~v~~~~r~~~   41 (252)
T PRK07856          3 DLTGRVVLVTGGTRGIGAGIARAF-LAAGATVVVCGRRAP   41 (252)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEeCChh
Confidence            478999999985 68999999999 678999999998753

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.41  E-value=0.42  Score=39.56  Aligned_cols=38  Identities=21%  Similarity=0.186  Sum_probs=31.2

Q ss_pred             cCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          163 LKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       163 l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ...+++.|.| .|.||+.+++.| ..-|.+|+...++...
T Consensus         4 ~~~~~vlItGasg~iG~~l~~~l-~~~g~~v~~~~~~~~~   42 (249)
T PRK12825          4 LMGRVALVTGAARGLGRAIALRL-ARAGADVVVHYRSDEE   42 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHH-HHCCCeEEEEeCCCHH
Confidence            4567899997 599999999998 7889998887776544

>PRK05875 short chain dehydrogenase; Provisional

Probab=92.38  E-value=0.38  Score=40.98  Aligned_cols=38  Identities=16%  Similarity=0.137  Sum_probs=33.4

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       163 l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +.++++.|.|. |.||+.+++.| ..-|++|+.++|+...
T Consensus         5 ~~~k~vlItGasg~IG~~la~~l-~~~G~~V~~~~r~~~~   43 (276)
T PRK05875          5 FQDRTYLVTGGGSGIGKGVAAGL-VAAGAAVMIVGRNPDK   43 (276)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHH-HHCCCeEEEEeCCHHH
Confidence            67899999996 89999999998 6889999999987543

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=92.36  E-value=0.27  Score=44.81  Aligned_cols=39  Identities=28%  Similarity=0.238  Sum_probs=34.1

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      ....+++|.|.|. |.||+.+++.| ..-|.+|.+++|+..
T Consensus        56 ~~~~~~kVLVtGatG~IG~~l~~~L-l~~G~~V~~l~R~~~   95 (390)
T PLN02657         56 KEPKDVTVLVVGATGYIGKFVVREL-VRRGYNVVAVAREKS   95 (390)
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEEechh
Confidence            4568889999986 99999999998 678999999999764

>PRK06182 short chain dehydrogenase; Validated

Probab=92.35  E-value=0.34  Score=41.35  Aligned_cols=37  Identities=22%  Similarity=0.130  Sum_probs=32.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .++++.|.|. |.||+.+++.| ..-|++|++.+|+...
T Consensus         2 ~~k~vlItGasggiG~~la~~l-~~~G~~V~~~~r~~~~   39 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRL-AAQGYTVYGAARRVDK   39 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            4689999995 89999999998 6789999999998643

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=92.34  E-value=0.33  Score=40.96  Aligned_cols=39  Identities=18%  Similarity=0.138  Sum_probs=34.1

Q ss_pred             cccCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          161 NLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       161 ~~l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      ..+.|+++.|.| .|.||..+|+.| ...|++|+..+|+..
T Consensus         8 ~~~~~k~ilItGa~g~IG~~la~~l-~~~G~~V~~~~r~~~   47 (259)
T PRK08213          8 FDLSGKTALVTGGSRGLGLQIAEAL-GEAGARVVLSARKAE   47 (259)
T ss_pred             hCcCCCEEEEECCCchHHHHHHHHH-HHcCCEEEEEeCCHH
Confidence            347899999998 599999999999 678999999999764

>cd00704 MDH Malate dehydrogenase

Probab=92.34  E-value=0.4  Score=42.66  Aligned_cols=72  Identities=17%  Similarity=0.163  Sum_probs=42.0

Q ss_pred             EEEEEcC-ChHHHHHHHHHhccCCc-------EEEEEcCCc--chHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhh
Q 026023          167 TVGVIGA-GRIGSAYARMMVEGFKM-------NLIYYDLYQ--ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (244)
Q Consensus       167 tvgIvG~-G~IG~~vA~~la~afG~-------~V~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  236 (244)
                      +|+|+|. |+||..+|..| ..-|.       .+..+|...  ........|.. ...... .....+  ..+..+.++.
T Consensus         2 KV~IiGAaG~VG~~~a~~L-~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~-d~~~~~-~~~~~i--~~~~~~~~~~   76 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLI-ASGELFGDDQPVILHLLDIPPAMKALEGVVMELQ-DCAFPL-LKGVVI--TTDPEEAFKD   76 (323)
T ss_pred             EEEEECCCcHHHHHHHHHH-HhCCccCCCCceEEEEEecCCccCccceeeeehh-hhcccc-cCCcEE--ecChHHHhCC
Confidence            7999999 99999999987 34332       588999875  21000000000 000000 001111  1467899999


Q ss_pred             CCEEEEe
Q 026023          237 ADVVCTL  243 (244)
Q Consensus       237 sD~Vvl~  243 (244)
                      ||+|++.
T Consensus        77 aDiVVit   83 (323)
T cd00704          77 VDVAILV   83 (323)
T ss_pred             CCEEEEe
Confidence            9999975

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=92.32  E-value=0.35  Score=48.32  Aligned_cols=64  Identities=25%  Similarity=0.274  Sum_probs=43.7

Q ss_pred             EEEEEcCChHHHHH-HHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          167 TVGVIGAGRIGSAY-ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       167 tvgIvG~G~IG~~v-A~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      ++.|+|+|.+|... |+.| +..|.+|.++|....+..++ .+       ..+.   .+.. ..-.+.+..+|+||+.
T Consensus         6 ~i~viG~G~sG~salA~~L-~~~G~~V~~sD~~~~~~~~~-L~-------~~gi---~~~~-g~~~~~~~~~d~vV~S   70 (809)
T PRK14573          6 FYHFIGIGGIGMSALAHIL-LDRGYSVSGSDLSEGKTVEK-LK-------AKGA---RFFL-GHQEEHVPEDAVVVYS   70 (809)
T ss_pred             eEEEEEecHHhHHHHHHHH-HHCCCeEEEECCCCChHHHH-HH-------HCCC---EEeC-CCCHHHcCCCCEEEEC
Confidence            69999999999998 9998 89999999999875442222 11       1111   1111 1223667789999864

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.31  E-value=0.43  Score=39.87  Aligned_cols=35  Identities=26%  Similarity=0.236  Sum_probs=29.8

Q ss_pred             cCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCC
Q 026023          163 LKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLY  198 (244)
Q Consensus       163 l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~  198 (244)
                      +.++++.|.| .|.||+.+|++| ..-|++|+...++
T Consensus         3 l~~k~ilItGas~gIG~~la~~l-~~~G~~vv~~~~~   38 (253)
T PRK08642          3 ISEQTVLVTGGSRGLGAAIARAF-AREGARVVVNYHQ   38 (253)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHH-HHCCCeEEEEcCC
Confidence            5788999998 689999999998 6889999876554

>PRK06198 short chain dehydrogenase; Provisional

Probab=92.22  E-value=0.32  Score=40.98  Aligned_cols=38  Identities=24%  Similarity=0.267  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcE-EEEEcCCcc
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMN-LIYYDLYQA  200 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~-V~~~~~~~~  200 (244)
                      .+.++++.|.|. |.||+.+++.| ...|++ |+.++|+..
T Consensus         3 ~~~~k~vlItGa~g~iG~~la~~l-~~~G~~~V~~~~r~~~   42 (260)
T PRK06198          3 RLDGKVALVTGGTQGLGAAIARAF-AERGAAGLVICGRNAE   42 (260)
T ss_pred             CCCCcEEEEeCCCchHHHHHHHHH-HHCCCCeEEEEcCCHH
Confidence            478899999985 78999999998 688999 999998754

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.21  E-value=0.36  Score=40.49  Aligned_cols=35  Identities=23%  Similarity=0.209  Sum_probs=29.2

Q ss_pred             CEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       166 ~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      |++.|.| .|.||+.+++.| ..-|++|+.++|+..+
T Consensus         3 k~vlItG~sg~iG~~la~~L-~~~g~~vi~~~r~~~~   38 (256)
T PRK12745          3 PVALVTGGRRGIGLGIARAL-AAAGFDLAINDRPDDE   38 (256)
T ss_pred             cEEEEeCCCchHHHHHHHHH-HHCCCEEEEEecCchh
Confidence            5677776 489999999999 6889999999987543

>PRK07814 short chain dehydrogenase; Provisional

Probab=92.19  E-value=0.34  Score=41.12  Aligned_cols=39  Identities=23%  Similarity=0.258  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEcCC-hHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~G-~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .+.|+++.|.|.+ .||+.+++.| ..-|++|+..+|+...
T Consensus         7 ~~~~~~vlItGasggIG~~~a~~l-~~~G~~Vi~~~r~~~~   46 (263)
T PRK07814          7 RLDDQVAVVTGAGRGLGAAIALAF-AEAGADVLIAARTESQ   46 (263)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            4789999999865 6999999998 6789999999998643

>PRK09291 short chain dehydrogenase; Provisional

Probab=92.14  E-value=0.41  Score=40.17  Aligned_cols=35  Identities=20%  Similarity=0.128  Sum_probs=30.3

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       165 g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      ++++.|.|. |.||+.+++.| ..-|++|++.+|+..
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l-~~~G~~v~~~~r~~~   37 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRL-ARKGHNVIAGVQIAP   37 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEeCCHH
Confidence            568888885 89999999998 688999999998754

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=92.14  E-value=0.35  Score=43.04  Aligned_cols=74  Identities=19%  Similarity=0.105  Sum_probs=44.1

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhccCCc-------EEEEEcCCcchH--HHHHHhhhhhhhhcCCCCCccccccCCHHHHhh
Q 026023          166 QTVGVIGA-GRIGSAYARMMVEGFKM-------NLIYYDLYQATR--LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR  235 (244)
Q Consensus       166 ~tvgIvG~-G~IG~~vA~~la~afG~-------~V~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~  235 (244)
                      ++|+|+|. |+||..+|-.| -.-|.       ++..+|.....+  .....|.... ..... ....+ . .+..+-++
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l-~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~-~~~~~-~~~~i-~-~~~~~~~~   77 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRI-ASGEMFGPDQPVILQLLELPQALKALEGVAMELEDC-AFPLL-AEIVI-T-DDPNVAFK   77 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHH-HhccccCCCCceEEEEEecCCcccccceeehhhhhc-ccccc-CceEE-e-cCcHHHhC
Confidence            48999999 99999999987 45554       799999853220  0110110000 00000 01112 2 46689999


Q ss_pred             hCCEEEEeC
Q 026023          236 EADVVCTLC  244 (244)
Q Consensus       236 ~sD~Vvl~~  244 (244)
                      +||+|+++.
T Consensus        78 daDivvita   86 (322)
T cd01338          78 DADWALLVG   86 (322)
T ss_pred             CCCEEEEeC
Confidence            999999863

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK08324 short chain dehydrogenase; Validated

Probab=92.11  E-value=0.31  Score=47.68  Aligned_cols=40  Identities=30%  Similarity=0.373  Sum_probs=35.4

Q ss_pred             cccCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          161 NLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       161 ~~l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ..+.|+++.|.| .|.||+.+++.| ...|++|+.++|+...
T Consensus       418 ~~l~gk~vLVTGasggIG~~la~~L-~~~Ga~Vvl~~r~~~~  458 (681)
T PRK08324        418 KPLAGKVALVTGAAGGIGKATAKRL-AAEGACVVLADLDEEA  458 (681)
T ss_pred             cCCCCCEEEEecCCCHHHHHHHHHH-HHCcCEEEEEeCCHHH
Confidence            457899999999 599999999998 7889999999998644

>PRK06138 short chain dehydrogenase; Provisional

Probab=92.11  E-value=0.46  Score=39.68  Aligned_cols=38  Identities=26%  Similarity=0.302  Sum_probs=33.0

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       163 l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +.|+++.|.|. |.||+.+++.| ..-|++|+.++|+...
T Consensus         3 ~~~k~~lItG~sg~iG~~la~~l-~~~G~~v~~~~r~~~~   41 (252)
T PRK06138          3 LAGRVAIVTGAGSGIGRATAKLF-AREGARVVVADRDAEA   41 (252)
T ss_pred             CCCcEEEEeCCCchHHHHHHHHH-HHCCCeEEEecCCHHH
Confidence            67899999986 89999999998 5679999999988643

>PRK08177 short chain dehydrogenase; Provisional

Probab=92.11  E-value=0.47  Score=39.17  Aligned_cols=35  Identities=11%  Similarity=0.008  Sum_probs=30.4

Q ss_pred             CEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       166 ~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +++.|.| .|.||+.+++.| ...|++|+.++|++..
T Consensus         2 k~vlItG~sg~iG~~la~~l-~~~G~~V~~~~r~~~~   37 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRL-LERGWQVTATVRGPQQ   37 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHH-HhCCCEEEEEeCCCcc
Confidence            5678887 799999999999 6889999999998754

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=92.10  E-value=0.43  Score=42.43  Aligned_cols=38  Identities=26%  Similarity=0.269  Sum_probs=32.9

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       163 l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +.|+++.|.|. |-||+.+++.| ..-|.+|++++|+...
T Consensus         2 ~~~k~ilItGatG~IG~~l~~~L-~~~G~~V~~~~r~~~~   40 (349)
T TIGR02622         2 WQGKKVLVTGHTGFKGSWLSLWL-LELGAEVYGYSLDPPT   40 (349)
T ss_pred             cCCCEEEEECCCChhHHHHHHHH-HHCCCEEEEEeCCCcc
Confidence            46789999995 99999999999 6889999999987643

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=92.08  E-value=0.35  Score=40.74  Aligned_cols=37  Identities=24%  Similarity=0.238  Sum_probs=32.7

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ  199 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~  199 (244)
                      .+.++++.|.|. |.||+.+++.| ..-|++|+.++|+.
T Consensus         5 ~~~~k~vlVtGas~gIG~~la~~l-~~~G~~v~~~~r~~   42 (260)
T PRK12823          5 RFAGKVVVVTGAAQGIGRGVALRA-AAEGARVVLVDRSE   42 (260)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEeCch
Confidence            378899999987 77999999998 68899999999974

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=92.01  E-value=0.34  Score=41.66  Aligned_cols=34  Identities=18%  Similarity=0.332  Sum_probs=28.9

Q ss_pred             EEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          167 TVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       167 tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +|.|.|. |.||+.+++.| ..-|.+|.+.+|++..
T Consensus         1 ~ilVtGatG~iG~~vv~~L-~~~g~~V~~~~R~~~~   35 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLL-QAASVPFLVASRSSSS   35 (285)
T ss_pred             CEEEEcCCChHHHHHHHHH-HhCCCcEEEEeCCCcc
Confidence            3667776 99999999998 6789999999998754

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=91.98  E-value=0.23  Score=45.79  Aligned_cols=38  Identities=18%  Similarity=0.239  Sum_probs=34.3

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       163 l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +..+++.|+|+|++|+.+++.| ...|.+|..+++++..
T Consensus       229 ~~~~~iiIiG~G~~g~~l~~~L-~~~~~~v~vid~~~~~  266 (453)
T PRK09496        229 KPVKRVMIVGGGNIGYYLAKLL-EKEGYSVKLIERDPER  266 (453)
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHH
Confidence            4578999999999999999999 8999999999988754

>PRK14805 ornithine carbamoyltransferase; Provisional

Probab=91.97  E-value=2.7  Score=37.04  Aligned_cols=75  Identities=11%  Similarity=0.078  Sum_probs=46.8

Q ss_pred             cCCCEEEEEcCC-hHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023          163 LKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC  241 (244)
Q Consensus       163 l~g~tvgIvG~G-~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv  241 (244)
                      +.|++|+++|=+ ++..+.+..+ ..||++|..+.|..-...++..+.-....+..+   ..+...+++ +.++.+|+|.
T Consensus       145 l~g~kva~vGD~~~v~~S~~~~~-~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g---~~~~~~~d~-~a~~~aDvvy  219 (302)
T PRK14805        145 VSKVKLAYVGDGNNVTHSLMYGA-AILGATMTVICPPGHFPDGQIVAEAQELAAKSG---GKLVLTSDI-EAIEGHDAIY  219 (302)
T ss_pred             cCCcEEEEEcCCCccHHHHHHHH-HHcCCEEEEECCchhcCCHHHHHHHHHHHHHcC---CEEEEEcCH-HHHCCCCEEE
Confidence            789999999974 5678889997 789999999998653222221110000011111   122234565 4689999997


Q ss_pred             E
Q 026023          242 T  242 (244)
Q Consensus       242 l  242 (244)
                      .
T Consensus       220 ~  220 (302)
T PRK14805        220 T  220 (302)
T ss_pred             e
Confidence            5

>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=91.95  E-value=0.47  Score=40.09  Aligned_cols=35  Identities=20%  Similarity=0.301  Sum_probs=30.7

Q ss_pred             ccCCCEEEEEcCC---hHHHHHHHHHhccCCcEEEEEcC
Q 026023          162 LLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDL  197 (244)
Q Consensus       162 ~l~g~tvgIvG~G---~IG~~vA~~la~afG~~V~~~~~  197 (244)
                      .+.||++.|.|.+   .||+.+|+.| ...|++|+..++
T Consensus         3 ~l~~k~vlVtGas~~~giG~~~a~~l-~~~G~~vi~~~~   40 (256)
T PRK12859          3 QLKNKVAVVTGVSRLDGIGAAICKEL-AEAGADIFFTYW   40 (256)
T ss_pred             CcCCcEEEEECCCCCCChHHHHHHHH-HHCCCeEEEEec
Confidence            4889999999985   6999999998 689999988753

>PRK09242 tropinone reductase; Provisional

Probab=91.87  E-value=0.42  Score=40.23  Aligned_cols=38  Identities=32%  Similarity=0.346  Sum_probs=33.5

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      .+.||++.|.|. |.||+.+++.| ..-|++|+..+|+..
T Consensus         6 ~~~~k~~lItGa~~gIG~~~a~~l-~~~G~~v~~~~r~~~   44 (257)
T PRK09242          6 RLDGQTALITGASKGIGLAIAREF-LGLGADVLIVARDAD   44 (257)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHH-HHcCCEEEEEeCCHH
Confidence            478999999985 79999999998 688999999998754

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=91.85  E-value=0.4  Score=40.42  Aligned_cols=36  Identities=22%  Similarity=0.267  Sum_probs=31.8

Q ss_pred             ccCCCEEEEEcCC---hHHHHHHHHHhccCCcEEEEEcCC
Q 026023          162 LLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLY  198 (244)
Q Consensus       162 ~l~g~tvgIvG~G---~IG~~vA~~la~afG~~V~~~~~~  198 (244)
                      .+.|+++.|.|.+   .||..+|+.| ..-|++|+..+|+
T Consensus         2 ~l~~k~vlItGas~~~giG~~la~~l-~~~G~~vi~~~r~   40 (256)
T PRK12748          2 PLMKKIALVTGASRLNGIGAAVCRRL-AAKGIDIFFTYWS   40 (256)
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHH-HHcCCcEEEEcCC
Confidence            3688999999985   6999999999 5789999999987

>PRK07102 short chain dehydrogenase; Provisional

Probab=91.84  E-value=0.55  Score=39.18  Aligned_cols=35  Identities=20%  Similarity=0.163  Sum_probs=30.3

Q ss_pred             CEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       166 ~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +++.|.| .|.||+.+++.| ..-|.+|+..+|+...
T Consensus         2 ~~vlItGas~giG~~~a~~l-~~~G~~Vi~~~r~~~~   37 (243)
T PRK07102          2 KKILIIGATSDIARACARRY-AAAGARLYLAARDVER   37 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHH-HhcCCEEEEEeCCHHH
Confidence            5788888 699999999999 5789999999998644

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=91.83  E-value=0.22  Score=48.23  Aligned_cols=36  Identities=19%  Similarity=0.266  Sum_probs=32.6

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ...+-|+|+|++|+.+++.| +..|.++...|.+++.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L-~~~g~~vvvID~d~~~  435 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLL-LSSGVKMTVLDHDPDH  435 (621)
T ss_pred             cCcEEEEecChHHHHHHHHH-HhCCCCEEEEECCHHH
Confidence            46799999999999999999 8999999999998764

>PRK06392 homoserine dehydrogenase; Provisional

Probab=91.82  E-value=0.21  Score=44.55  Aligned_cols=32  Identities=16%  Similarity=0.335  Sum_probs=25.6

Q ss_pred             EEEEEcCChHHHHHHHHHhc-------cCCcEEEEEcCC
Q 026023          167 TVGVIGAGRIGSAYARMMVE-------GFKMNLIYYDLY  198 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~-------afG~~V~~~~~~  198 (244)
                      +|+|+|||+||+.+++.|.+       .++.+|.++..+
T Consensus         2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds   40 (326)
T PRK06392          2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDS   40 (326)
T ss_pred             EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEEC
Confidence            79999999999999999833       278887776443

>PRK06128 oxidoreductase; Provisional

Probab=91.78  E-value=0.43  Score=41.50  Aligned_cols=37  Identities=24%  Similarity=0.234  Sum_probs=31.5

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ  199 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~  199 (244)
                      .+.||++.|.|. |.||+.+|+.| ..-|++|+...++.
T Consensus        52 ~l~~k~vlITGas~gIG~~~a~~l-~~~G~~V~i~~~~~   89 (300)
T PRK06128         52 RLQGRKALITGADSGIGRATAIAF-AREGADIALNYLPE   89 (300)
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHH-HHcCCEEEEEeCCc
Confidence            478999999986 88999999999 57899998876654

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=91.78  E-value=0.39  Score=42.06  Aligned_cols=78  Identities=15%  Similarity=0.079  Sum_probs=46.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcchHHH--HHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       164 ~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      .|+++.|.|. |.||+.+++.| ..-|.+|.+..|+.....+  ......+. ..+............+++++++..|+|
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~~~d~v   81 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLL-LFRGYTINATVRDPKDRKKTDHLLALDGA-KERLKLFKADLLDEGSFELAIDGCETV   81 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHH-HHCCCEEEEEEcCCcchhhHHHHHhccCC-CCceEEEeCCCCCchHHHHHHcCCCEE
Confidence            4789999994 99999999998 7889999888776543111  00000000 000000011233345678888899987


Q ss_pred             EEe
Q 026023          241 CTL  243 (244)
Q Consensus       241 vl~  243 (244)
                      +.+
T Consensus        82 ih~   84 (325)
T PLN02989         82 FHT   84 (325)
T ss_pred             EEe
Confidence            653

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=91.72  E-value=0.52  Score=39.33  Aligned_cols=36  Identities=22%  Similarity=0.280  Sum_probs=29.1

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEE-EcCCc
Q 026023          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIY-YDLYQ  199 (244)
Q Consensus       163 l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~-~~~~~  199 (244)
                      +.|+++.|.|. |.||+.+++.| ...|.+|+. ..|+.
T Consensus         2 ~~~~~vlItGa~g~iG~~~a~~l-~~~g~~v~~~~~r~~   39 (250)
T PRK08063          2 FSGKVALVTGSSRGIGKAIALRL-AEEGYDIAVNYARSR   39 (250)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEcCCCH
Confidence            45788999986 78999999999 688999876 45554

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=91.71  E-value=0.49  Score=41.57  Aligned_cols=39  Identities=18%  Similarity=0.037  Sum_probs=33.1

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ++.++++.|.|. |.||..+++.| ..-|.+|+..+|+...
T Consensus         3 ~~~~k~vlVTGas~gIG~~~a~~L-~~~G~~V~~~~r~~~~   42 (322)
T PRK07453          3 QDAKGTVIITGASSGVGLYAAKAL-AKRGWHVIMACRNLKK   42 (322)
T ss_pred             CCCCCEEEEEcCCChHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            457899999985 88999999999 6789999999987543

>PRK12828 short chain dehydrogenase; Provisional

Probab=91.69  E-value=0.3  Score=40.26  Aligned_cols=39  Identities=23%  Similarity=0.311  Sum_probs=33.7

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .+.|+++.|.|. |.||+.+++.| ..-|.+|+.++|++.+
T Consensus         4 ~~~~k~vlItGatg~iG~~la~~l-~~~G~~v~~~~r~~~~   43 (239)
T PRK12828          4 SLQGKVVAITGGFGGLGRATAAWL-AARGARVALIGRGAAP   43 (239)
T ss_pred             CCCCCEEEEECCCCcHhHHHHHHH-HHCCCeEEEEeCChHh
Confidence            367899999985 99999999998 5669999999997654

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=91.69  E-value=0.23  Score=42.13  Aligned_cols=39  Identities=23%  Similarity=0.301  Sum_probs=34.0

Q ss_pred             ccCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .+.|+++.|.| .|.||+.+++.| ..-|++|+..+++...
T Consensus         6 ~l~~k~vlItG~s~gIG~~la~~l-~~~G~~v~~~~~~~~~   45 (266)
T PRK06171          6 NLQGKIIIVTGGSSGIGLAIVKEL-LANGANVVNADIHGGD   45 (266)
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHH-HHCCCEEEEEeCCccc
Confidence            47899999998 589999999998 6899999999987643

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=91.68  E-value=0.43  Score=42.26  Aligned_cols=69  Identities=25%  Similarity=0.316  Sum_probs=43.2

Q ss_pred             EEEEEcC-ChHHHHHHHHHhccCC--cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccc---cCCHHHHhhhCCEE
Q 026023          167 TVGVIGA-GRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR---ASSMDEVLREADVV  240 (244)
Q Consensus       167 tvgIvG~-G~IG~~vA~~la~afG--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~ell~~sD~V  240 (244)
                      +|+|+|. |+||..+|-.| ..-|  -++..+|..+..  .+..|-     .. ......+..   -+++.+.++.||+|
T Consensus         1 KV~IiGaaG~VG~~~a~~l-~~~~~~~elvL~Di~~a~--g~a~DL-----~~-~~~~~~i~~~~~~~~~~~~~~daDiv   71 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLL-KLQPYVSELSLYDIAGAA--GVAADL-----SH-IPTAASVKGFSGEEGLENALKGADVV   71 (312)
T ss_pred             CEEEECCCCHHHHHHHHHH-HhCCCCcEEEEecCCCCc--EEEchh-----hc-CCcCceEEEecCCCchHHHcCCCCEE
Confidence            5899999 99999999987 4444  479999987621  111110     00 011112221   12568999999999


Q ss_pred             EEeC
Q 026023          241 CTLC  244 (244)
Q Consensus       241 vl~~  244 (244)
                      +++.
T Consensus        72 vita   75 (312)
T TIGR01772        72 VIPA   75 (312)
T ss_pred             EEeC
Confidence            9863

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=91.67  E-value=0.42  Score=41.67  Aligned_cols=31  Identities=26%  Similarity=0.460  Sum_probs=27.0

Q ss_pred             EEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023          167 TVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ  199 (244)
Q Consensus       167 tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~  199 (244)
                      +|.|.|. |-||+.+++.| ..-| +|+++++..
T Consensus         2 ~iLVtG~~GfiGs~l~~~L-~~~g-~V~~~~~~~   33 (299)
T PRK09987          2 NILLFGKTGQVGWELQRAL-APLG-NLIALDVHS   33 (299)
T ss_pred             eEEEECCCCHHHHHHHHHh-hccC-CEEEecccc
Confidence            6889986 99999999998 7888 899999864

>PRK06349 homoserine dehydrogenase; Provisional

Probab=91.67  E-value=0.53  Score=43.51  Aligned_cols=63  Identities=19%  Similarity=0.265  Sum_probs=38.8

Q ss_pred             CEEEEEcCChHHHHHHHHHhcc----------CCcEEEE-EcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh
Q 026023          166 QTVGVIGAGRIGSAYARMMVEG----------FKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL  234 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~a----------fG~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell  234 (244)
                      -+|||+|+|.||+.+++.| +.          .+.+|.+ +++++... ..             ..........++++++
T Consensus         4 i~VgiiG~G~VG~~~~~~L-~~~~~~l~~~~g~~i~l~~V~~~~~~~~-~~-------------~~~~~~~~~~d~~~ll   68 (426)
T PRK06349          4 LKVGLLGLGTVGSGVVRIL-EENAEEIAARAGRPIEIKKVAVRDLEKD-RG-------------VDLPGILLTTDPEELV   68 (426)
T ss_pred             EEEEEEeeCHHHHHHHHHH-HHhHHHHHHhcCCCEEEEEEEeCChhhc-cC-------------CCCcccceeCCHHHHh
Confidence            4799999999999998776 32          3566554 45553221 10             0001112346899999


Q ss_pred             hh--CCEEEEe
Q 026023          235 RE--ADVVCTL  243 (244)
Q Consensus       235 ~~--sD~Vvl~  243 (244)
                      ..  .|+|+.+
T Consensus        69 ~d~~iDvVve~   79 (426)
T PRK06349         69 NDPDIDIVVEL   79 (426)
T ss_pred             hCCCCCEEEEC
Confidence            64  6888764

>PRK06181 short chain dehydrogenase; Provisional

Probab=91.67  E-value=0.49  Score=39.95  Aligned_cols=36  Identities=25%  Similarity=0.277  Sum_probs=31.0

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       165 g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ++++.|.|. |.||+.+++.| ..-|++|+..+|+...
T Consensus         1 ~~~vlVtGasg~iG~~la~~l-~~~g~~Vi~~~r~~~~   37 (263)
T PRK06181          1 GKVVIITGASEGIGRALAVRL-ARAGAQLVLAARNETR   37 (263)
T ss_pred             CCEEEEecCCcHHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            467888887 89999999998 6889999999998643

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=91.66  E-value=0.49  Score=39.10  Aligned_cols=38  Identities=32%  Similarity=0.400  Sum_probs=32.8

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       163 l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +.++++.|.|. |.||+.+++.| ..-|.+|+.++|++..
T Consensus         3 ~~~~~ilItGasg~iG~~l~~~l-~~~g~~v~~~~r~~~~   41 (246)
T PRK05653          3 LQGKTALVTGASRGIGRAIALRL-AADGAKVVIYDSNEEA   41 (246)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCChhH
Confidence            45789999985 99999999998 6789999999998644

>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase

Probab=91.64  E-value=0.55  Score=38.89  Aligned_cols=32  Identities=19%  Similarity=0.084  Sum_probs=27.7

Q ss_pred             CEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCC
Q 026023          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLY  198 (244)
Q Consensus       166 ~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~  198 (244)
                      |++.|.| .|.||+.+|+.| ..-|++|+...++
T Consensus         1 k~~lItG~sg~iG~~la~~l-~~~G~~v~~~~r~   33 (242)
T TIGR01829         1 RIALVTGGMGGIGTAICQRL-AKDGYRVAANCGP   33 (242)
T ss_pred             CEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCC
Confidence            5778887 799999999999 6889999988873

(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.

>PRK08226 short chain dehydrogenase; Provisional

Probab=91.64  E-value=0.47  Score=40.06  Aligned_cols=37  Identities=32%  Similarity=0.465  Sum_probs=32.5

Q ss_pred             cCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          163 LKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       163 l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      +.++++.|.| .|.||+.+++.| ..-|.+|+.++|+..
T Consensus         4 ~~~~~~lItG~s~giG~~la~~l-~~~G~~Vv~~~r~~~   41 (263)
T PRK08226          4 LTGKTALITGALQGIGEGIARVF-ARHGANLILLDISPE   41 (263)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHH-HHCCCEEEEecCCHH
Confidence            6789999997 778999999999 678999999998753

>PRK06841 short chain dehydrogenase; Provisional

Probab=91.61  E-value=0.31  Score=40.95  Aligned_cols=39  Identities=23%  Similarity=0.278  Sum_probs=34.5

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ++.|+++.|.|. |.||+.+|+.| ...|++|+..+|+...
T Consensus        12 ~~~~k~vlItGas~~IG~~la~~l-~~~G~~Vi~~~r~~~~   51 (255)
T PRK06841         12 DLSGKVAVVTGGASGIGHAIAELF-AAKGARVALLDRSEDV   51 (255)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            578999999995 99999999999 6789999999997643

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=91.60  E-value=0.44  Score=42.73  Aligned_cols=31  Identities=23%  Similarity=0.489  Sum_probs=25.1

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhccC-CcEEEEEcC
Q 026023          166 QTVGVIGA-GRIGSAYARMMVEGF-KMNLIYYDL  197 (244)
Q Consensus       166 ~tvgIvG~-G~IG~~vA~~la~af-G~~V~~~~~  197 (244)
                      .+|+|+|. |.+|+++++.| ... ++++.++.+
T Consensus         3 ~kVaIiGAtG~vG~~l~~~L-~~~p~~elv~v~~   35 (343)
T PRK00436          3 IKVGIVGASGYTGGELLRLL-LNHPEVEIVAVTS   35 (343)
T ss_pred             eEEEEECCCCHHHHHHHHHH-HcCCCceEEEEEC
Confidence            58999996 99999999998 565 778766544

>PLN02240 UDP-glucose 4-epimerase

Probab=91.59  E-value=0.62  Score=41.18  Aligned_cols=37  Identities=27%  Similarity=0.272  Sum_probs=32.0

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ  199 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~  199 (244)
                      ++.++++.|.|. |.||+.+++.| ..-|.+|+++++..
T Consensus         2 ~~~~~~vlItGatG~iG~~l~~~L-~~~g~~V~~~~~~~   39 (352)
T PLN02240          2 SLMGRTILVTGGAGYIGSHTVLQL-LLAGYKVVVIDNLD   39 (352)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCC
Confidence            467899999975 99999999998 67799999998754

>PLN00198 anthocyanidin reductase; Provisional

Probab=91.54  E-value=0.59  Score=41.24  Aligned_cols=36  Identities=17%  Similarity=0.065  Sum_probs=31.0

Q ss_pred             cCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023          163 LKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (244)
Q Consensus       163 l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~  199 (244)
                      ..+++|.|.| .|-||+.+++.| ..-|.+|.++.|..
T Consensus         7 ~~~~~vlItG~~GfIG~~l~~~L-~~~g~~V~~~~r~~   43 (338)
T PLN00198          7 TGKKTACVIGGTGFLASLLIKLL-LQKGYAVNTTVRDP   43 (338)
T ss_pred             CCCCeEEEECCchHHHHHHHHHH-HHCCCEEEEEECCC
Confidence            4588999998 899999999998 68899998777664

>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated

Probab=91.53  E-value=0.48  Score=42.90  Aligned_cols=37  Identities=22%  Similarity=0.382  Sum_probs=32.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ..++|+|+|-|..|+.+++.+ +.+|.+|+.++..+..
T Consensus        11 ~~~~ilIiG~g~~~~~~~~a~-~~~G~~v~~~~~~~~~   47 (395)
T PRK09288         11 SATRVMLLGSGELGKEVAIEA-QRLGVEVIAVDRYANA   47 (395)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCCCC
Confidence            456999999999999999996 8999999999988754

>PRK08703 short chain dehydrogenase; Provisional

Probab=91.51  E-value=0.34  Score=40.34  Aligned_cols=39  Identities=23%  Similarity=0.234  Sum_probs=34.2

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .+.|+++.|.|. |.||+.+++.| ...|++|++++|+...
T Consensus         3 ~l~~k~vlItG~sggiG~~la~~l-~~~g~~V~~~~r~~~~   42 (239)
T PRK08703          3 TLSDKTILVTGASQGLGEQVAKAY-AAAGATVILVARHQKK   42 (239)
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHH-HHcCCEEEEEeCChHH
Confidence            478899999985 88999999998 6789999999998743

>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=91.50  E-value=0.42  Score=40.59  Aligned_cols=65  Identities=25%  Similarity=0.302  Sum_probs=43.0

Q ss_pred             cCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          172 GAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       172 G~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      +-|+|| .+||.+ |-||. +...++|......+.+....|     ...--....-+++|+|.+.++|+|+-+
T Consensus        14 ~~gNIG-~vARaM-KNfGl~eL~LV~Pr~~~~eeA~a~A~g-----A~dile~A~i~~tL~eAl~d~~~v~aT   79 (242)
T COG0565          14 HPGNIG-SVARAM-KNFGLSELRLVNPRAGLDEEARALAAG-----ARDILENAKIVDTLEEALADCDLVVAT   79 (242)
T ss_pred             CCccHH-HHHHHH-HhCCcceEEEECCCCCCCHHHHHHhcc-----chhhhccCeeecCHHHHhcCCCEEEEe
Confidence            569998 789998 99999 588888887522232221111     111112333458999999999999854

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=91.49  E-value=0.52  Score=39.69  Aligned_cols=38  Identities=18%  Similarity=0.121  Sum_probs=31.7

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      .+.||++.|.|. |.||+.+|+.| ..-|++|+...++..
T Consensus         4 ~l~~k~~lItGas~gIG~~~a~~l-~~~G~~v~~~~~~~~   42 (255)
T PRK06463          4 RFKGKVALITGGTRGIGRAIAEAF-LREGAKVAVLYNSAE   42 (255)
T ss_pred             CcCCCEEEEeCCCChHHHHHHHHH-HHCCCEEEEEeCCcH
Confidence            367899999985 89999999999 688999988766543

>PRK06197 short chain dehydrogenase; Provisional

Probab=91.41  E-value=0.3  Score=42.50  Aligned_cols=40  Identities=15%  Similarity=0.075  Sum_probs=34.8

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .++.|+++.|.|. |.||+.+|+.| ..-|++|+..+|+...
T Consensus        12 ~~~~~k~vlItGas~gIG~~~a~~l-~~~G~~vi~~~r~~~~   52 (306)
T PRK06197         12 PDQSGRVAVVTGANTGLGYETAAAL-AAKGAHVVLAVRNLDK   52 (306)
T ss_pred             ccCCCCEEEEcCCCCcHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            5689999999985 89999999999 5779999999987643

>PRK07063 short chain dehydrogenase; Provisional

Probab=91.33  E-value=0.6  Score=39.36  Aligned_cols=39  Identities=33%  Similarity=0.301  Sum_probs=33.5

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .+.||++.|.|. |.||+.+++.| ..-|++|+.++|+...
T Consensus         4 ~l~~k~vlVtGas~gIG~~~a~~l-~~~G~~vv~~~r~~~~   43 (260)
T PRK07063          4 RLAGKVALVTGAAQGIGAAIARAF-AREGAAVALADLDAAL   43 (260)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            378999999985 78999999999 6889999999997543

>PRK08278 short chain dehydrogenase; Provisional

Probab=91.31  E-value=0.71  Score=39.48  Aligned_cols=38  Identities=26%  Similarity=0.192  Sum_probs=33.0

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      .+.|+++.|.|. |.||+.+|+.| ...|++|+.++|+..
T Consensus         3 ~~~~k~vlItGas~gIG~~ia~~l-~~~G~~V~~~~r~~~   41 (273)
T PRK08278          3 SLSGKTLFITGASRGIGLAIALRA-ARDGANIVIAAKTAE   41 (273)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEecccc
Confidence            367899999984 88999999998 688999999998754

>PRK06940 short chain dehydrogenase; Provisional

Probab=91.29  E-value=0.58  Score=40.17  Aligned_cols=34  Identities=35%  Similarity=0.440  Sum_probs=30.0

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      +|++.|-|.|.||+.+|+.| . -|.+|+..+|+..
T Consensus         2 ~k~~lItGa~gIG~~la~~l-~-~G~~Vv~~~r~~~   35 (275)
T PRK06940          2 KEVVVVIGAGGIGQAIARRV-G-AGKKVLLADYNEE   35 (275)
T ss_pred             CCEEEEECCChHHHHHHHHH-h-CCCEEEEEeCCHH
Confidence            57889999999999999998 4 5999999998754

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=91.24  E-value=0.65  Score=39.36  Aligned_cols=39  Identities=28%  Similarity=0.351  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .+.|+++.|.|. |.||+.+++.| ..-|++|+..+++...
T Consensus         7 ~~~~k~~lItGa~~~iG~~ia~~l-~~~G~~vv~~~~~~~~   46 (265)
T PRK07097          7 SLKGKIALITGASYGIGFAIAKAY-AKAGATIVFNDINQEL   46 (265)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHH-HHCCCeEEEEeCCHHH
Confidence            478899999986 68999999999 6899999999887643

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=91.10  E-value=0.73  Score=38.80  Aligned_cols=39  Identities=15%  Similarity=0.237  Sum_probs=33.0

Q ss_pred             cccCCCEEEEEcCC-hHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          161 NLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       161 ~~l~g~tvgIvG~G-~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      .++.||++.|.|.. .||+++|+.| ...|++|++.++...
T Consensus         6 ~~l~~k~~lItG~~~gIG~a~a~~l-~~~G~~vv~~~~~~~   45 (253)
T PRK08993          6 FSLEGKVAVVTGCDTGLGQGMALGL-AEAGCDIVGINIVEP   45 (253)
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEecCcch
Confidence            35889999999865 7999999999 688999999987653

>PRK09135 pteridine reductase; Provisional

Probab=91.07  E-value=0.76  Score=38.12  Aligned_cols=37  Identities=22%  Similarity=0.196  Sum_probs=31.7

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       163 l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      ..++++.|.|. |.||+.+++.| ..-|++|+.++|+..
T Consensus         4 ~~~~~vlItGa~g~iG~~l~~~l-~~~g~~v~~~~r~~~   41 (249)
T PRK09135          4 DSAKVALITGGARRIGAAIARTL-HAAGYRVAIHYHRSA   41 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEcCCCH
Confidence            45688999985 89999999999 678999999998753

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=91.06  E-value=0.56  Score=41.42  Aligned_cols=76  Identities=13%  Similarity=0.173  Sum_probs=45.6

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhccCC--cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023          163 LKGQTVGVIGA-GRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (244)
Q Consensus       163 l~g~tvgIvG~-G~IG~~vA~~la~afG--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~  239 (244)
                      +.|+++.|.|. |.||+.+++.| ..-|  .+|..++|+.... ......+..  ..............++.++++..|+
T Consensus         2 ~~~k~vLVTGatG~IG~~l~~~L-~~~g~~~~V~~~~r~~~~~-~~~~~~~~~--~~~~~v~~Dl~d~~~l~~~~~~iD~   77 (324)
T TIGR03589         2 FNNKSILITGGTGSFGKAFISRL-LENYNPKKIIIYSRDELKQ-WEMQQKFPA--PCLRFFIGDVRDKERLTRALRGVDY   77 (324)
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHH-HHhCCCcEEEEEcCChhHH-HHHHHHhCC--CcEEEEEccCCCHHHHHHHHhcCCE
Confidence            46889999985 99999999998 4554  7899998865431 111110000  0000001122333467788888998


Q ss_pred             EEE
Q 026023          240 VCT  242 (244)
Q Consensus       240 Vvl  242 (244)
                      |+-
T Consensus        78 Vih   80 (324)
T TIGR03589        78 VVH   80 (324)
T ss_pred             EEE
Confidence            864

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	244
1gdh_A	320	Crystal Structure Of A Nad-Dependent D-Glycerate De		1e-12
2dbr_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		6e-12
4g2n_A	345	Crystal Structure Of Putative D-Isomer Specific 2-H		9e-12
2dld_A	337	D-Lactate Dehydrogenase Complexed With Nadh And Oxa		5e-11
2dbq_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		6e-11
2gcg_A	330	Ternary Crystal Structure Of Human Glyoxylate Reduc		3e-10
2h1s_A	328	Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE RE		1e-09
2g76_A	335	Crystal Structure Of Human 3-Phosphoglycerate Dehyd		1e-09
2cuk_A	311	Crystal Structure Of Tt0316 Protein From Thermus Th		2e-09
1j4a_A	333	Insights Into Domain Closure, Substrate Specificity		5e-09
2d0i_A	333	Crystal Structure Ph0520 Protein From Pyrococcus Ho		5e-09
1j49_A	333	Insights Into Domain Closure, Substrate Specificity		5e-09
1hl3_A	358	CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK		3e-08
3k5p_A	416	Crystal Structure Of Amino Acid-Binding Act: D-Isom		5e-08
1dxy_A	333	Structure Of D-2-Hydroxyisocaproate Dehydrogenase L		7e-08
1hku_A	358	CtbpBARS: A DUAL-Function Protein Involved In Trans		1e-07
1mx3_A	347	Crystal Structure Of Ctbp Dehydrogenase Core Holo F		1e-07
2yq4_A	343	Crystal Structure Of D-isomer Specific 2-hydroxyaci		2e-07
3ga0_A	358	Ctbp1BARS GLY172->glu Mutant Structure: Impairing N		2e-07
3ddn_A	528	Crystal Structure Of Hydroxypyruvic Acid Phosphate		2e-07
1ygy_A	529	Crystal Structure Of D-3-Phosphoglycerate Dehydroge		3e-07
3ba1_A	333	Structure Of Hydroxyphenylpyruvate Reductase From C		4e-07
2ome_A	336	Crystal Structure Of Human Ctbp2 Dehydrogenase Comp		8e-07
4e5n_A	330	Thermostable Phosphite Dehydrogenase In Complex Wit		1e-06
4e5k_A	329	Thermostable Phosphite Dehydrogenase In Complex Wit		2e-06
4ebf_A	334	Semet Thermostable Phosphite Dehydrogenase Glu175-A		2e-06
4e5m_A	329	Thermostable Phosphite Dehydrogenase E175aA176R IN		2e-06
4e5p_A	332	Thermostable Phosphite Dehydrogenase A176r Variant		2e-06
2w2k_A	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		2e-05
2w2k_B	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		2e-05
2w2l_D	348	Crystal Structure Of The Holo Forms Of Rhodotorula		2e-05
1wwk_A	307	Crystal Structure Of Phosphoglycerate Dehydrogenase		6e-05
4dgs_A	340	The Crystals Structure Of Dehydrogenase From Rhizob		1e-04
2ekl_A	313	Structure Of St1218 Protein From Sulfolobus Tokodai		3e-04
2p9c_A	410	Crystal Structure Of Serine Bound G336v Mutant Of E		6e-04
2p9g_A	410	Crystal Structure Of Serine Bound G336v,G337v Doubl		6e-04
2j6i_A	364	Candida Boidinii Formate Dehydrogenase (Fdh) C-Term		9e-04
2fss_A	365	Candida Boidinii Formate Dehydrogenase (Fdh) K47e M		9e-04
3kb6_A	334	Crystal Structure Of D-lactate Dehydrogenase From A		9e-04

>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate Dehydrogenase At 2.4 Angstroms Resolution Length = 320

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 36  QDCRVEICTQKKTILSVEDIIALIGDKC-DGVIGQLTEDWGETLFAALSRAGGKAFSNMA 94
            D ++ I    +T  SV+ ++  + +KC   VI ++ E+              K  S  +
Sbjct: 29  DDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENI-------------KCISTYS 75
Query: 95  VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
           +G++++D++A    GI VGN P                   RR  E ++ +R   + GW 
Sbjct: 76  IGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWE 135
Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201
           P   VG  L  +T+G+ G G IG A A+   +GF M++ Y+D ++A+
Sbjct: 136 PLELVGEKLDNKTLGIYGFGSIGQALAK-RAQGFDMDIDYFDTHRAS 181

>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1) Length = 334

Iteration: 1
 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 103/213 (48%), Gaps = 25/213 (11%)
Query: 33  LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN 92
           ++E +  VE+   +K I    +I+     + D ++  L+E   + +F    +   +  +N
Sbjct: 18  MLEDEFEVEVWGDEKEIPR--EILLKKVKEVDALVTMLSERIDKEVFENAPKL--RIVAN 73
Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD- 151
            AVGY+N+D+  A K GI V NTP V                 R +V+ D F+R+G +  
Sbjct: 74  YAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKK 133
Query: 152 ---GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
               W P  F+G  + G+T+G+IG GRIG A A+   +GF M ++YY   +   +E+ + 
Sbjct: 134 RGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAK-RAKGFNMRILYYSRTRKEEVERELN 192
Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVVC 241
           A  +F                ++++LRE+D V 
Sbjct: 193 A--EF--------------KPLEDLLRESDFVV 209

>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific 2-Hydroxyacid Dehydrogenase, Nad-Binding From Polaromonas Sp. Js6 66 Length = 345

Iteration: 1
 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Query: 86  GGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFM 145
           G K  + ++VGY+++D  AA   GI V +TP V                 RR  EAD  +
Sbjct: 94  GLKTIATLSVGYDHIDXAAARSLGIKVLHTPDVLSDACAEIAXLLVLNACRRGYEADRXV 153
Query: 146 RAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD 196
           R+G + GW P   +G  L G+ +G+ G GRIG A A     GF + + Y++
Sbjct: 154 RSGSWPGWGPTQLLGXGLTGRRLGIFGXGRIGRAIA-TRARGFGLAIHYHN 203

>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate Length = 337

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 78/179 (43%), Gaps = 21/179 (11%)
Query: 63  CDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXX 122
            DGV+     D+      AL+ AG    S   VG +N+D++ A + G  + N P      
Sbjct: 47  ADGVVVYQQLDYTADTLQALADAGVTKMSLRNVGVDNIDMDKAKELGFQITNVPVYSPNA 106
Query: 123 XXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYAR 182
                        R+    DE M A     W P   +G  ++ Q VGV+G G IG  + R
Sbjct: 107 IAEHAAIQAARVLRQDKRMDEKM-AKRDLRWAPT--IGREVRDQVVGVVGTGHIGQVFMR 163
Query: 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC 241
           +M EGF   +I YD+++   LEK     G ++              S+D++ ++ADV+ 
Sbjct: 164 IM-EGFGAKVIAYDIFKNPELEK----KGYYV-------------DSLDDLYKQADVIS 204

>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41) Length = 334

Iteration: 1
 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 101/212 (47%), Gaps = 25/212 (11%)
Query: 34  IEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM 93
           +E +  VE+   +K I    +I+     + D ++  L+E   + +F    +   +  +N 
Sbjct: 19  LEDEFEVEVWGDEKEIPR--EILLKKVKEVDALVTXLSERIDKEVFENAPKL--RIVANY 74
Query: 94  AVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD-- 151
           AVGY+N+D+  A K GI V NTP V                 R +V+ D F+R+G +   
Sbjct: 75  AVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKR 134
Query: 152 --GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA 209
              W P  F+G  + G+T+G+IG GRIG A A+   +GF   ++YY   +   +E+ + A
Sbjct: 135 GVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAK-RAKGFNXRILYYSRTRKEEVERELNA 193
Query: 210 YGQFLKANGEQPVTWKRASSMDEVLREADVVC 241
             +F                ++++LRE+D V 
Sbjct: 194 --EF--------------KPLEDLLRESDFVV 209

>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate ReductaseHYDROXYPYRUVATE REDUCTASE Length = 330

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 76/168 (45%), Gaps = 3/168 (1%)
Query: 17  RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE 76
           +V  T+ +P    + L    DC VE     + I + E    + G    G++  L++   +
Sbjct: 10  KVFVTRRIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAG--AHGLLCLLSDHVDK 67
Query: 77  TLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXR 136
            +  A + A  K  S M+VG +++ ++   K GI VG TP V                 R
Sbjct: 68  RILDA-AGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCR 126
Query: 137 RIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMM 184
           R+ EA E ++ G +  W P    G  L   TVG+IG GRIG A AR +
Sbjct: 127 RLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRL 174

>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO Sapiens Length = 328

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 75/168 (44%), Gaps = 3/168 (1%)
Query: 17  RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE 76
           +V  T+ +P    + L    DC VE     + I + E    + G    G++  L++   +
Sbjct: 8   KVFVTRRIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAG--AHGLLCLLSDHVDK 65
Query: 77  TLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXR 136
            +  A + A  K  S  +VG +++ ++   K GI VG TP V                 R
Sbjct: 66  RILDA-AGANLKVISTXSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCR 124
Query: 137 RIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMM 184
           R+ EA E ++ G +  W P    G  L   TVG+IG GRIG A AR +
Sbjct: 125 RLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRL 172

>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate Dehydrogenase Length = 335

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 69/151 (45%), Gaps = 7/151 (4%)
Query: 46  KKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAA 105
           +K  LS E++IA + D C+G+I +        +  A  +   +       G +NVD+ AA
Sbjct: 52  EKQNLSKEELIAELQD-CEGLIVRSATKVTADVINAAEKL--QVVGRAGTGVDNVDLEAA 108
Query: 106 NKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKG 165
            + GI V NTP                   R+I +A   M+ G    W    F+G  L G
Sbjct: 109 TRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDG---KWERKKFMGTELNG 165
Query: 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYD 196
           +T+G++G GRIG   A  M + F M  I YD
Sbjct: 166 KTLGILGLGRIGREVATRM-QSFGMKTIGYD 195

>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus Thermophilus Hb8 Length = 311

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 108/226 (47%), Gaps = 30/226 (13%)
Query: 17  RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE 76
           RV+ T+ +PG + ++ L E+   VE+   +   L   +++     + +G +G +      
Sbjct: 2   RVLVTRTLPG-KALDRLRERGLEVEV--HRGLFLPKAELL----KRVEGAVGLIPTVEDR 54
Query: 77  TLFAALSRAGG-KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXX 135
                + RA G K  +  +VG ++VD+ AA + GI V +TPGV                 
Sbjct: 55  IDAEVMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVA 114
Query: 136 RRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 195
           RR+VE   + R GL+  W P L +G  L+G T+G++G GRIG A A+  +  F M ++Y+
Sbjct: 115 RRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRAL-AFGMRVVYH 173
Query: 196 DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC 241
                               A   +P+ +    S++E+L+EADVV 
Sbjct: 174 --------------------ARTPKPLPYP-FLSLEELLKEADVVS 198

>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 87/207 (42%), Gaps = 24/207 (11%)
Query: 36  QDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV 95
           +D   ++  +    L   + +AL     DGV+     D+      AL+  G    S   V
Sbjct: 21  EDAHKDVEVEYTDKLLTPETVAL-AKGADGVVVYQQLDYIAETLQALADNGITKMSLRNV 79
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD-GWL 154
           G +N+D+  A + G  + N P                   R+    DE  +   +D  W 
Sbjct: 80  GVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDE--KVARHDLRWA 137
Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
           P   +G  ++ Q VGV+G G IG  + ++M EGF   +I YD+++   LEK     G ++
Sbjct: 138 PT--IGREVRDQVVGVVGTGHIGQVFMQIM-EGFGAKVITYDIFRNPELEK----KGYYV 190
Query: 215 KANGEQPVTWKRASSMDEVLREADVVC 241
                         S+D++ ++ADV+ 
Sbjct: 191 -------------DSLDDLYKQADVIS 204

>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus Horikoshii Ot3 Length = 333

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 86/195 (44%), Gaps = 25/195 (12%)
Query: 51  SVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGI 110
           S E++  +IG + DG+I   T      +     R   K  S  + GY+N+D+  A K GI
Sbjct: 32  SGEELKGVIG-RFDGIIVSPTTKITREVLENAERL--KVISCHSAGYDNIDLEEATKRGI 88
Query: 111 AVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVG----NLLKGQ 166
            V    G+                 R+I  AD+F+R G ++     ++ G      L G+
Sbjct: 89  YVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESH-AKIWTGFKRIESLYGK 147
Query: 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR 226
            VG++G G IG A AR ++  F + L Y+  ++   +EK + A                R
Sbjct: 148 KVGILGMGAIGKAIARRLI-PFGVKLYYWSRHRKVNVEKELKA----------------R 190
Query: 227 ASSMDEVLREADVVC 241
              +DE+L ++D+V 
Sbjct: 191 YMDIDELLEKSDIVI 205

>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 87/207 (42%), Gaps = 24/207 (11%)
Query: 36  QDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV 95
           +D   ++  +    L   + +AL     DGV+     D+      AL+  G    S   V
Sbjct: 21  EDAHKDVEVEYTDKLLTPETVAL-AKGADGVVVYQQLDYIAETLQALADNGITKMSLRNV 79
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD-GWL 154
           G +N+D+  A + G  + N P                   R+    DE  +   +D  W 
Sbjct: 80  GVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDE--KVARHDLRWA 137
Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
           P   +G  ++ Q VGV+G G IG  + ++M EGF   +I YD+++   LEK     G ++
Sbjct: 138 PT--IGREVRDQVVGVVGTGHIGQVFMQIM-EGFGAKVITYDIFRNPELEK----KGYYV 190
Query: 215 KANGEQPVTWKRASSMDEVLREADVVC 241
                         S+D++ ++ADV+ 
Sbjct: 191 -------------DSLDDLYKQADVIS 204

>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK PEPTIDE Length = 358

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 97/240 (40%), Gaps = 43/240 (17%)
Query: 23  PMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQ------LTEDWGE 76
           PM     + LL  +DC VE+      IL     +A     CD    Q      L E  G 
Sbjct: 20  PMHPRPLVALLDGRDCTVEM-----PILKDVATVAF----CDAQSTQEIHEKVLNEAVGA 70
Query: 77  TLFAA--LSRAGGKAFSNMAV------GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXX 128
            ++    L+R   + F  + +      G++N+D+ +A   GIAV N P            
Sbjct: 71  LMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTL 130
Query: 129 XXXXXXXRRIVEADEFMRAGLYDGWLPNLFV----GNLLKGQTVGVIGAGRIGSAYARMM 184
                  RR     + +R G     +  +         ++G+T+G+IG GR+G A A + 
Sbjct: 131 CHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVA-LR 189
Query: 185 VEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244
            + F  N+++YD Y +  +E+   A G             +R S++ ++L  +D V   C
Sbjct: 190 AKAFGFNVLFYDPYLSDGIER---ALG------------LQRVSTLQDLLFHSDCVTLHC 234

>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain From Brucella Melitensis Length = 416

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 75/173 (43%), Gaps = 28/173 (16%)
Query: 69  QLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXX 128
           QLTE+    +FAA +R    A    +VG N V++ AA K GI V N P            
Sbjct: 69  QLTEE----IFAAANRL--IAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVI 122
Query: 129 XXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF 188
                  RRI        AG   GW         ++G+T+G++G G IGS     + E  
Sbjct: 123 GEIIMLMRRIFPRSVSAHAG---GWEKTAIGSREVRGKTLGIVGYGNIGSQVGN-LAESL 178
Query: 189 KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC 241
            M + YYD   + +L+     YG             K A+S+DE+L+ +DVV 
Sbjct: 179 GMTVRYYD--TSDKLQ-----YGNV-----------KPAASLDELLKTSDVVS 213

>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase Length = 333

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 3/135 (2%)
Query: 64  DGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXX 123
           DG+    T  +   +F  +   G K  +   VG +N+D+ A  +YGI + N P       
Sbjct: 46  DGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAAI 105
Query: 124 XXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARM 183
                       R + +    ++AG Y+      F+G  L  QTVGV+G G IG   A  
Sbjct: 106 AEFALTDTLYLLRNMGKVQAQLQAGDYEK--AGTFIGKELGQQTVGVMGTGHIGQV-AIK 162
Query: 184 MVEGFKMNLIYYDLY 198
           + +GF   +I YD Y
Sbjct: 163 LFKGFGAKVIAYDPY 177

>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In Transcription Corepression And Golgi Membrane Fission Length = 358

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 20/153 (13%)
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
           G++N+D+ +A   GIAV N P                   RR     + +R G     + 
Sbjct: 98  GFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQALREGTRVQSVE 157
Query: 156 NLFV----GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 211
            +         ++G+T+G+IG GR+G A A +  + F  N+++YD Y +  +E+   A G
Sbjct: 158 QIREVASGAARIRGETLGIIGLGRVGQAVA-LRAKAFGFNVLFYDPYLSDGIER---ALG 213
Query: 212 QFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244
                        +R S++ ++L  +D V   C
Sbjct: 214 ------------LQRVSTLQDLLFHSDCVTLHC 234

>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form Length = 347

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 20/153 (13%)
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
           G++N+D+ +A   GIAV N P                   RR     + +R G     + 
Sbjct: 95  GFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVE 154
Query: 156 NLFV----GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 211
            +         ++G+T+G+IG GR+G A A +  + F  N+++YD Y             
Sbjct: 155 QIREVASGAARIRGETLGIIGLGRVGQAVA-LRAKAFGFNVLFYDPY------------- 200
Query: 212 QFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244
             L    E+ +  +R S++ ++L  +D V   C
Sbjct: 201 --LSDGVERALGLQRVSTLQDLLFHSDCVTLHC 231

>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid Dehydrogenase From Lactobacillus Delbrueckii Ssp. Bulgaricus Length = 343

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 65/166 (39%), Gaps = 20/166 (12%)
Query: 76  ETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXX 135
           E ++  LS  G K      VG+N ++ +   KY + V N P                   
Sbjct: 60  EVVYQKLSEYGVKCIGLRIVGFNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLL 119
Query: 136 RRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 195
           R+I E    M    +D   P+  + N +   TVG+IG G IGSA A +        +I Y
Sbjct: 120 RKIGEFRYRMDHD-HDFTWPSNLISNEIYNLTVGLIGVGHIGSAVAEIF-SAMGAKVIAY 177
Query: 196 DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC 241
           D+      E F+T Y  F                 D VL+EAD+V 
Sbjct: 178 DVAYNPEFEPFLT-YTDF-----------------DTVLKEADIVS 205

>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H) Binding And Dimerization Length = 358

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 96/240 (40%), Gaps = 43/240 (17%)
Query: 23  PMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQ------LTEDWGE 76
           PM     + LL  +DC VE+      IL     +A     CD    Q      L E  G 
Sbjct: 20  PMHPRPLVALLDGRDCTVEM-----PILKDVATVAF----CDAQSTQEIHEKVLNEAVGA 70
Query: 77  TLFAA--LSRAGGKAFSNMAV------GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXX 128
            ++    L+R   + F  + +      G++N+D+ +A   GIAV N P            
Sbjct: 71  LMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTL 130
Query: 129 XXXXXXXRRIVEADEFMRAGLYDGWLPNLFV----GNLLKGQTVGVIGAGRIGSAYARMM 184
                  RR     + +R G     +  +         ++G+T+G+IG  R+G A A + 
Sbjct: 131 CHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLERVGQAVA-LR 189
Query: 185 VEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244
            + F  N+++YD Y +  +E+   A G             +R S++ ++L  +D V   C
Sbjct: 190 AKAFGFNVLFYDPYLSDGIER---ALG------------LQRVSTLQDLLFHSDCVTLHC 234

>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound D-3- Phosphoglycerate Dehydrogenase In Mycobacterium Tuberculosis Length = 528

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K  +   VG +NVDV+AA   G+ V N P                   R+I  AD  +R 
Sbjct: 67  KIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLR- 125
Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY 198
                W  + F G  + G+TVGV+G GRIG   A+  +  F   ++ YD Y
Sbjct: 126 --EHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQ-RIAAFGAYVVAYDPY 173

>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase From Mycobacterium Tuberculosis Length = 529

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K  +   VG +NVDV+AA   G+ V N P                   R+I  AD  +R 
Sbjct: 68  KIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLR- 126
Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY 198
                W  + F G  + G+TVGV+G GRIG   A+  +  F   ++ YD Y
Sbjct: 127 --EHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQ-RIAAFGAYVVAYDPY 174

>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus Blu Length = 333

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 61/142 (42%), Gaps = 5/142 (3%)
Query: 54  DIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVG 113
           D +AL  +    V+G         L  AL +   +  S+ +VG + VD+    + G+ V 
Sbjct: 57  DFLALQAESIRAVVGNSNAGADAELIDALPKL--EIVSSFSVGLDKVDLIKCEEKGVRVT 114
Query: 114 NTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA 173
           NTP V                 RRI E D+++R G +     +  +     G+ VG+IG 
Sbjct: 115 NTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWK--FGDFKLTTKFSGKRVGIIGL 172
Query: 174 GRIGSAYARMMVEGFKMNLIYY 195
           GRIG A A    E F   + Y+
Sbjct: 173 GRIGLAVAE-RAEAFDCPISYF 193

>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed With Nad(H) Length = 336

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 97/239 (40%), Gaps = 38/239 (15%)
Query: 20  STKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQ--LTEDWGET 77
           S  P P    + LL  +DC VE+      IL     +A    +    I +  L E  G  
Sbjct: 1   SMHPRP---LVALLDGRDCTVEM-----PILKDLATVAFCDAQSTQEIHEKVLNEAVGAM 52
Query: 78  LFAA--LSRAGGKAFSNMAV------GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXX 129
           ++    L+R   + F  + V      GY+NVD+ AA + GIAV N P             
Sbjct: 53  MYHTITLTREDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTIC 112
Query: 130 XXXXXXRRIVEADEFMRAGLYDGWLPNLFV----GNLLKGQTVGVIGAGRIGSAYARMMV 185
                 RR     + +R G     +  +         ++G+T+G+IG GR G A A +  
Sbjct: 113 HILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVA-VRA 171
Query: 186 EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244
           + F  ++I+YD Y               L+   E+ +  +R  ++ ++L ++D V   C
Sbjct: 172 KAFGFSVIFYDPY---------------LQDGIERSLGVQRVYTLQDLLYQSDCVSLHC 215

>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad Length = 330

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
           G++N DV+A    G+ +   P +                 R +  AD F+R+G + GW P
Sbjct: 77  GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQP 136
Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD 196
             F G  L   TVG +G G IG A A  + +G+   L Y++
Sbjct: 137 R-FYGTGLDNATVGFLGMGAIGLAMADRL-QGWGATLQYHE 175

>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad And Sulfite Length = 329

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
           G++N DV+A    G+ +   P +                 R +  AD F+R+G + GW P
Sbjct: 77  GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQP 136
Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD 196
             F G  L   TVG +G G IG A A  + +G+   L Y++
Sbjct: 137 R-FYGTGLDNATVGFLGMGAIGLAMADRL-QGWGATLQYHE 175

>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala Mutant Length = 334

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
           G++N DV+A    G+ +   P +                 R +  AD F+R+G + GW P
Sbjct: 78  GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGWQP 137
Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 195
             F G  L   TVG +G G IG A A  + +G+   L Y+
Sbjct: 138 R-FYGTGLDNATVGFLGXGAIGLAXADRL-QGWGATLQYH 175

>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX WITH NADP Length = 329

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
           G++N DV+A    G+ +   P +                 R +  AD F+R+G + GW P
Sbjct: 77  GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGWQP 136
Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 195
             F G  L   TVG +G G IG A A  + +G+   L Y+
Sbjct: 137 R-FYGTGLDNATVGFLGMGAIGLAMADRL-QGWGATLQYH 174

>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In Complex With Nad Length = 332

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
           G++N DV+A    G+ +   P +                 R +  AD F+R+G + GW P
Sbjct: 77  GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGWQP 136
Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 195
             F G  L   TVG +G G IG A A  + +G+   L Y+
Sbjct: 137 R-FYGTGLDNATVGFLGMGAIGLAMADRL-QGWGATLQYH 174

>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a. Length = 348

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 19/172 (11%)
Query: 74  WGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXX 133
           W   L + L  +  K F+    G++ +D++A N+ G+A  N+ G                
Sbjct: 69  WNADLISHLP-SSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILS 127
Query: 134 XXRRIVEADEFMRAGLYDGW-LPNLFVGNLL---KGQTVGVIGAGRIGSAYARMMVEGFK 189
             R    ++   R G  + +   +L +G      +G  +G +G G I    AR  V G  
Sbjct: 128 VFRLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLG 187
Query: 190 MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC 241
           M L+YYD+  A               A  E+ +  +R  S++E+ R +D V 
Sbjct: 188 MKLVYYDVAPA--------------DAETEKALGAERVDSLEELARRSDCVS 225

>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a Length = 348

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 19/172 (11%)
Query: 74  WGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXX 133
           W   L + L  +  K F+    G++ +D++A N+ G+A  N+ G                
Sbjct: 69  WNADLISHLP-SSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILS 127
Query: 134 XXRRIVEADEFMRAGLYDGW-LPNLFVGNLL---KGQTVGVIGAGRIGSAYARMMVEGFK 189
             R    ++   R G  + +   +L +G      +G  +G +G G I    AR  V G  
Sbjct: 128 VFRLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLG 187
Query: 190 MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC 241
           M L+YYD+  A               A  E+ +  +R  S++E+ R +D V 
Sbjct: 188 MKLVYYDVAPA--------------DAETEKALGAERVDSLEELARRSDCVS 225

>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 2.5a Length = 348

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 65/158 (41%), Gaps = 18/158 (11%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K F+    G++ +D++A N+ G+A  N+ G                  R    ++   R 
Sbjct: 82  KVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAART 141
Query: 148 GLYDGW-LPNLFVGNLL---KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL 203
           G  + +   +L +G      +G  +G +G G I    AR  V G  M L+YYD+  A   
Sbjct: 142 GDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPA--- 198
Query: 204 EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC 241
                       A  E+ +  +R  S++E+ R +D V 
Sbjct: 199 -----------DAETEKALGAERVDSLEELARRSDCVS 225

>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 307

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 69/154 (44%), Gaps = 20/154 (12%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K  +   VG +N+DV AA + GI V N P                   R+I  AD  MR 
Sbjct: 68  KVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMRE 127
Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
           G+   W     +G  L+G+T+G+IG GRIG   A+ +     MN++ YD Y      K V
Sbjct: 128 GV---WAKKEAMGIELEGKTIGIIGFGRIGYQVAK-IANALGMNILLYDPYPNEERAKEV 183
Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVVC 241
              G+F+               ++ +L+E+DVV 
Sbjct: 184 N--GKFV--------------DLETLLKESDVVT 201

>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium Meliloti Length = 340

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Query: 95  VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
           VG + VD+  A +  I V  TPGV                 RR+ + D  +R G +    
Sbjct: 102 VGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALXLAVLRRVGDGDRLVREGRWAAG- 160
Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD 196
             L +G+  KG+ +GV+G G+IG A A    E F  ++ Y++
Sbjct: 161 EQLPLGHSPKGKRIGVLGLGQIGRALAS-RAEAFGXSVRYWN 201

>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii Length = 313

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/154 (20%), Positives = 62/154 (40%), Gaps = 22/154 (14%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K  +   +G +N+D   A K  I V   PG                  R++  +    ++
Sbjct: 70  KIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKS 129
Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
           G++         G  L G+T+G++G GRIG+    ++     M ++ YD+       + +
Sbjct: 130 GIFKK-----IEGLELAGKTIGIVGFGRIGTKVG-IIANAMGMKVLAYDILDIREKAEKI 183
Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVVC 241
            A                +A S++E+L+ +DV+ 
Sbjct: 184 NA----------------KAVSLEELLKNSDVIS 201

>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
Query: 89  AFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAG 148
           A    A+G N VD++AA K GI V N P                   R + EA+     G
Sbjct: 78  AIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRG 137
Query: 149 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDL 197
           +++      F     +G+ +G+IG G IG+    ++ E   M + +YD+
Sbjct: 138 VWNKLAAGSFEA---RGKKLGIIGYGHIGTQLG-ILAESLGMYVYFYDI 182

>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
Query: 89  AFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAG 148
           A    A+G N VD++AA K GI V N P                   R + EA+     G
Sbjct: 78  AIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRG 137
Query: 149 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDL 197
           +++      F     +G+ +G+IG G IG+    ++ E   M + +YD+
Sbjct: 138 VWNKLAAGSFEA---RGKKLGIIGYGHIGTQLG-ILAESLGMYVYFYDI 182

>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal Mutant Length = 364

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 14/79 (17%)
Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 222
           ++G+T+  IGAGRIG      +V      L+YYD YQA             L  + E+ V
Sbjct: 162 IEGKTIATIGAGRIGYRVLERLVPFNPKELLYYD-YQA-------------LPKDAEEKV 207
Query: 223 TWKRASSMDEVLREADVVC 241
             +R  +++E++ +AD+V 
Sbjct: 208 GARRVENIEELVAQADIVT 226

>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant Length = 365

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 14/79 (17%)
Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 222
           ++G+T+  IGAGRIG      +V      L+YYD YQA             L  + E+ V
Sbjct: 163 IEGKTIATIGAGRIGYRVLERLVPFNPKELLYYD-YQA-------------LPKDAEEKV 208
Query: 223 TWKRASSMDEVLREADVVC 241
             +R  +++E++ +AD+V 
Sbjct: 209 GARRVENIEELVAQADIVT 227

>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex Aeolicus Complexed With Nad And Lactic Acid Length = 334

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 65/154 (42%), Gaps = 20/154 (12%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K     +VG++++D++   K GI V + P                   +R+   ++  R 
Sbjct: 66  KLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAXILTLVKRLKRIED--RV 123
Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
              +    +  +   L   T+GVIG GRIGS  A   +  F   ++ YD+ +   L++  
Sbjct: 124 KKLNFSQDSEILARELNRLTLGVIGTGRIGSRVAXYGL-AFGXKVLCYDVVKREDLKEKG 182
Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVVC 241
             Y                 +S+DE+L+E+DV+ 
Sbjct: 183 CVY-----------------TSLDELLKESDVIS 199

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	244
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	3e-60
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	4e-60
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	1e-58
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	2e-58
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	1e-57
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	4e-57
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	1e-52
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	1e-49
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	4e-49
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	1e-47
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	3e-44
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	8e-44
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	2e-43
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	3e-43
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	7e-43
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	1e-42
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	4e-41
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	1e-39
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	5e-39
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	7e-38
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	1e-35
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	3e-35
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	4e-35
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	4e-35
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	2e-34
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	6e-34
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	4e-33
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	5e-29
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	3e-23
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	6e-23
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	1e-07
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	2e-05
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	9e-05

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Length = 334

 Score =  192 bits (489), Expect = 3e-60
 Identities = 73/234 (31%), Positives = 121/234 (51%), Gaps = 27/234 (11%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           K +V  T+ +P    I +L E +  VE+    +  +  E ++  + +  D ++  L+E  
Sbjct: 2   KPKVFITREIP-EVGIKML-EDEFEVEVW-GDEKEIPREILLKKVKE-VDALVTMLSERI 57

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
            + +F    +   +  +N AVGY+N+D+  A K GI V NTP VLT+ TA+LA +L LA 
Sbjct: 58  DKEVFENAPKL--RIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLAT 115

Query: 135 ARRIVEADEFMRAG----LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM 190
           AR +V+ D F+R+G        W P  F+G  + G+T+G+IG GRIG A A+   +GF M
Sbjct: 116 ARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRA-KGFNM 174

Query: 191 NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244
            ++YY   +   +E+ + A                    ++++LRE+D V    
Sbjct: 175 RILYYSRTRKEEVERELNA----------------EFKPLEDLLRESDFVVLAV 212

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Length = 320

 Score =  191 bits (487), Expect = 4e-60
 Identities = 55/230 (23%), Positives = 102/230 (44%), Gaps = 20/230 (8%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           K +++ T P+P    +     +   V         ++++++I       D ++  L E  
Sbjct: 1   KKKILITWPLPEA-AMARA-RESYDVIA-HGDDPKITIDEMIETAKS-VDALLITLNEKC 56

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
            + +   +     K  S  ++G++++D++A    GI VGN P  +T  TAE+A  L L +
Sbjct: 57  RKEVIDRIPE-NIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGS 115

Query: 135 ARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
           ARR  E ++ +R   + GW P   VG  L  +T+G+ G G IG A A+   +GF M++ Y
Sbjct: 116 ARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRA-QGFDMDIDY 174

Query: 195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244
           +D ++                ++ E         S+D +L  +       
Sbjct: 175 FDTHR--------------ASSSDEASYQATFHDSLDSLLSVSQFFSLNA 210

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} Length = 311

 Score =  186 bits (476), Expect = 1e-58
 Identities = 70/228 (30%), Positives = 113/228 (49%), Gaps = 28/228 (12%)

Query: 17  RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE 76
           RV+ T+ +P  + ++ L E+    E+   +   L   +++  +     G+I  + +    
Sbjct: 2   RVLVTRTLP-GKALDRLRERGL--EVEVHRGLFLPKAELLKRVEG-AVGLIPTVEDRIDA 57

Query: 77  TLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAAR 136
            +         K  +  +VG ++VD+ AA + GI V +TPGVLTE TA+L  +L LA AR
Sbjct: 58  EVMDRAKGL--KVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVAR 115

Query: 137 RIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD 196
           R+VE   + R GL+  W P L +G  L+G T+G++G GRIG A A+     F M ++Y+ 
Sbjct: 116 RVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRA-LAFGMRVVYHA 174

Query: 197 LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244
                R  K               P  +    S++E+L+EADVV    
Sbjct: 175 -----RTPK-------------PLPYPFL---SLEELLKEADVVSLHT 201

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A Length = 330

 Score =  187 bits (477), Expect = 2e-58
 Identities = 65/234 (27%), Positives = 100/234 (42%), Gaps = 21/234 (8%)

Query: 12  PNGKYRVVSTKPMPGTRWINLLIEQ-DCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL 70
           P    +V  T+ +P       L    DC VE        +  +++   +     G++  L
Sbjct: 5   PVRLMKVFVTRRIP-AEGRVALARAADCEVEQ-WDSDEPIPAKELERGVAG-AHGLLCLL 61

Query: 71  TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASL 130
           ++   + +  A   A  K  S M+VG +++ ++   K GI VG TP VLT+TTAELA SL
Sbjct: 62  SDHVDKRILDAAG-ANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSL 120

Query: 131 SLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM 190
            L   RR+ EA E ++ G +  W P    G  L   TVG+IG GRIG A AR +   F +
Sbjct: 121 LLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLK-PFGV 179

Query: 191 NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244
               Y         +    +             +    S  E+  ++D +   C
Sbjct: 180 QRFLYT--GRQPRPEEAAEFQ----------AEFV---STPELAAQSDFIVVAC 218

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} Length = 345

 Score =  185 bits (473), Expect = 1e-57
 Identities = 58/230 (25%), Positives = 100/230 (43%), Gaps = 22/230 (9%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
             +    +       I   + Q   +E+   + T+L+   I +      + +    TE  
Sbjct: 28  IQKAFLCRRFTPA--IEAELRQRFDLEV-NLEDTVLTPSGIASRAHG-AEVLFVTATEAI 83

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              +   L   G K  + ++VGY+++D+ AA   GI V +TP VL++  AE+A  L L A
Sbjct: 84  TAEVIRKLQ-PGLKTIATLSVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNA 142

Query: 135 ARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
            RR  EAD  +R+G + GW P   +G  L G+ +G+ G GRIG A A     GF + + Y
Sbjct: 143 CRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATRA-RGFGLAIHY 201

Query: 195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244
           ++  + +   +    Y                  ++D +L  +D+     
Sbjct: 202 HNRTRLSHALEEGAIY----------------HDTLDSLLGASDIFLIAA 235

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* Length = 330

 Score =  183 bits (468), Expect = 4e-57
 Identities = 55/230 (23%), Positives = 93/230 (40%), Gaps = 23/230 (10%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
             ++V T  +     + LL    C +    Q  + L+ E+I+    D    ++  + +  
Sbjct: 2   LPKLVITHRVHE-EILQLL-APHCELITN-QTDSTLTREEILRRCRD-AQAMMAFMPDRV 57

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
                 A      +       G++N DV+A    G+ +   P +LT  TAELA  L++  
Sbjct: 58  DADFLQACPEL--RVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGL 115

Query: 135 ARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
            R +  AD F+R+G + GW P  F G  L   TVG +G G IG A A  +  G+   L Y
Sbjct: 116 GRHLRAADAFVRSGKFRGWQP-RFYGTGLDNATVGFLGMGAIGLAMADRLQ-GWGATLQY 173

Query: 195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244
           ++                 L    EQ +  ++  +  E+   +D +    
Sbjct: 174 HEAKA--------------LDTQTEQRLGLRQV-ACSELFASSDFILLAL 208

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} Length = 333

 Score =  171 bits (437), Expect = 1e-52
 Identities = 62/230 (26%), Positives = 99/230 (43%), Gaps = 29/230 (12%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           + +V     M     +  L ++   VEI        S E++  +IG   DG+I   T   
Sbjct: 2   RPKVGVLLKMKRE-ALEEL-KKYADVEIILY----PSGEELKGVIGR-FDGIIVSPTTKI 54

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              +     R   K  S  + GY+N+D+  A K GI V    G+L+E  AE    L +  
Sbjct: 55  TREVLENAERL--KVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINL 112

Query: 135 ARRIVEADEFMRAGLYDGWLP---NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMN 191
            R+I  AD+F+R G ++              L G+ VG++G G IG A AR +   F + 
Sbjct: 113 MRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRL-IPFGVK 171

Query: 192 LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC 241
           L Y+  ++   +EK + A                R   +DE+L ++D+V 
Sbjct: 172 LYYWSRHRKVNVEKELKA----------------RYMDIDELLEKSDIVI 205

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Length = 348

 Score =  165 bits (419), Expect = 1e-49
 Identities = 47/221 (21%), Positives = 84/221 (38%), Gaps = 25/221 (11%)

Query: 34  IEQDCRVEICTQKKTILSVEDIIALIGDKCDGVI------GQLTEDWGETLFAALSRAGG 87
            +Q   V            + +        + +I      G  +  W   L + L  +  
Sbjct: 23  FQQKFEVIPANLTTHDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADLISHLP-SSL 81

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRA 147
           K F+    G++ +D++A N+ G+A  N+ G     T++LA  L L+  R    ++   R 
Sbjct: 82  KVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAART 141

Query: 148 GLYDGWLPNLF----VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL 203
           G  + +           +  +G  +G +G G I    AR  V G  M L+YYD+      
Sbjct: 142 GDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAP---- 197

Query: 204 EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244
                       A  E+ +  +R  S++E+ R +D V    
Sbjct: 198 ----------ADAETEKALGAERVDSLEELARRSDCVSVSV 228

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} Length = 340

 Score =  163 bits (415), Expect = 4e-49
 Identities = 54/234 (23%), Positives = 91/234 (38%), Gaps = 29/234 (12%)

Query: 11  NPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL 70
             N K  ++  +PM    ++   ++++  V    Q         + A +      V    
Sbjct: 26  FRNVKPDLLLVEPMM--PFVMDELQRNYSVHRLYQA---ADRPALEAALPS-IRAVATGG 79

Query: 71  TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASL 130
                      L        +   VG + VD+  A +  I V  TPGVL +  A+L  +L
Sbjct: 80  GAGLSNEWMEKLPSL--GIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIAL 137

Query: 131 SLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM 190
            LA  RR+ + D  +R G +      L +G+  KG+ +GV+G G+IG A A    E F M
Sbjct: 138 MLAVLRRVGDGDRLVREGRWAAG-EQLPLGHSPKGKRIGVLGLGQIGRALAS-RAEAFGM 195

Query: 191 NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244
           ++ Y++     R                   V W    S  ++ R++DV+    
Sbjct: 196 SVRYWN-----RSTL--------------SGVDWIAHQSPVDLARDSDVLAVCV 230

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Length = 333

 Score =  159 bits (405), Expect = 1e-47
 Identities = 58/230 (25%), Positives = 98/230 (42%), Gaps = 29/230 (12%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
              V+   PM    ++   +++  ++    +  T  +  D +AL  +    V+G      
Sbjct: 23  AIGVLMMCPMST--YLEQELDKRFKL---FRYWTQPAQRDFLALQAESIRAVVGNSNAGA 77

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              L  AL +   +  S+ +VG + VD+    + G+ V NTP VLT+  A+LA  L LA 
Sbjct: 78  DAELIDALPKL--EIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAV 135

Query: 135 ARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
            RRI E D+++R G +     +  +     G+ VG+IG GRIG A A    E F   + Y
Sbjct: 136 LRRICECDKYVRRGAWKFG--DFKLTTKFSGKRVGIIGLGRIGLAVAE-RAEAFDCPISY 192

Query: 195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC 244
           +      R +K                  +    S+ E+   +D++   C
Sbjct: 193 FS-----RSKK--------------PNTNYTYYGSVVELASNSDILVVAC 223

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Length = 303

 Score =  150 bits (380), Expect = 3e-44
 Identities = 36/192 (18%), Positives = 66/192 (34%), Gaps = 28/192 (14%)

Query: 53  EDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAV 112
           +    + G     V   L         A + R   K    +  G +++   +     + V
Sbjct: 19  KYFKIVRGGDLGNVEAALVSRITAEELAKMPRL--KFIQVVTAGLDHLPWESIPP-HVTV 75

Query: 113 GNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 172
               G   +  AE A +L LA  +RI++  E M+ G Y   +       L++G+ V V+G
Sbjct: 76  AGNAGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVE----IPLIQGEKVAVLG 131

Query: 173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE 232
            G IG+   +++       +  +                            W+  +S++E
Sbjct: 132 LGEIGTRVGKIL-AALGAQVRGFSRTPK--------------------EGPWRFTNSLEE 170

Query: 233 VLREADVVCTLC 244
            LREA       
Sbjct: 171 ALREARAAVCAL 182

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* Length = 347

 Score =  149 bits (379), Expect = 8e-44
 Identities = 49/233 (21%), Positives = 88/233 (37%), Gaps = 27/233 (11%)

Query: 12  PNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLT 71
            +    V        T  + +L +    V  C       S ++I   + ++  G +   T
Sbjct: 18  GSHMPLVALLDGRDCTVEMPIL-KDVATVAFCDA----QSTQEIHEKVLNEAVGALMYHT 72

Query: 72  EDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLS 131
                           +    +  G++N+D+ +A   GIAV N P    E TA+      
Sbjct: 73  ITLTREDLEKFKAL--RIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHI 130

Query: 132 LAAARRIVEADEFMRAGL----YDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG 187
           L   RR     + +R G      +           ++G+T+G+IG GR+G A A    + 
Sbjct: 131 LNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRA-KA 189

Query: 188 FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240
           F  N+++YD Y               L    E+ +  +R S++ ++L  +D V
Sbjct: 190 FGFNVLFYDPY---------------LSDGVERALGLQRVSTLQDLLFHSDCV 227

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} Length = 307

 Score =  147 bits (374), Expect = 2e-43
 Identities = 58/226 (25%), Positives = 100/226 (44%), Gaps = 28/226 (12%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           + +V+   P+   + I +L +    V      +     + ++ L+ D  + +I +     
Sbjct: 3   RMKVLVAAPLH-EKAIQVLKDAGLEVIY----EEYPDEDRLVELVKD-VEAIIVRSKPKV 56

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              +  +  +   K  +   VG +N+DV AA + GI V N P   + + AELA  L  + 
Sbjct: 57  TRRVIESAPKL--KVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSV 114

Query: 135 ARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
           AR+I  AD  MR G    W     +G  L+G+T+G+IG GRIG   A++      MN++ 
Sbjct: 115 ARKIAFADRKMREG---VWAKKEAMGIELEGKTIGIIGFGRIGYQVAKIA-NALGMNILL 170

Query: 195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240
           YD Y     E+                  +     ++ +L+E+DVV
Sbjct: 171 YDPYPN---EERAKEVN----------GKFV---DLETLLKESDVV 200

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* Length = 333

 Score =  148 bits (375), Expect = 3e-43
 Identities = 49/188 (26%), Positives = 79/188 (42%), Gaps = 22/188 (11%)

Query: 53  EDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAV 112
            + +AL     DGV+     D+      AL+  G    S   VG +N+D+  A + G  +
Sbjct: 38  PETVALAKG-ADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQI 96

Query: 113 GNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 172
            N P       AE AA  +    R+    DE +             +G  ++ Q VGV+G
Sbjct: 97  TNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARH---DLRWAPTIGREVRDQVVGVVG 153

Query: 173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE 232
            G IG  + ++M EGF   +I YD+++   LEK                       S+D+
Sbjct: 154 TGHIGQVFMQIM-EGFGAKVITYDIFRNPELEKKGYYV-----------------DSLDD 195

Query: 233 VLREADVV 240
           + ++ADV+
Sbjct: 196 LYKQADVI 203

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Length = 331

 Score =  146 bits (370), Expect = 1e-42
 Identities = 37/194 (19%), Positives = 70/194 (36%), Gaps = 22/194 (11%)

Query: 47  KTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAAN 106
              L+ ++   +     D VI +      +       + G K       G +++D   A 
Sbjct: 31  PDYLNTKETAEMAAG-FDAVILRGNCFANKQNLDIYKKLGVKYILTRTAGTDHIDKEYAK 89

Query: 107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQ 166
           + G  +   P       AELA + ++   R             +   +        ++  
Sbjct: 90  ELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFK--VDAFMFSKEVRNC 147

Query: 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR 226
           TVGV+G GRIG   A++   G    +I  D+++   +E + T                  
Sbjct: 148 TVGVVGLGRIGRVAAQIF-HGMGATVIGEDVFEIKGIEDYCT-Q---------------- 189

Query: 227 ASSMDEVLREADVV 240
             S+DEVL ++D++
Sbjct: 190 -VSLDEVLEKSDII 202

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A Length = 393

 Score =  143 bits (364), Expect = 4e-41
 Identities = 42/213 (19%), Positives = 78/213 (36%), Gaps = 22/213 (10%)

Query: 30  INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGG-- 87
           +   +E +    + T  K           + D  D VI Q    W   L           
Sbjct: 59  LRKYLESNGHTLVVTSDKD-GPDSVFERELVD-ADVVISQPF--WPAYLTPERIAKAKNL 114

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRA 147
           K      +G ++VD+ +A    + V       + + AE    + L+  R  + + E+ R 
Sbjct: 115 KLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARK 174

Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
           G ++     +     L+   VG + AGRIG A  R +   F ++L Y D ++        
Sbjct: 175 GGWN-IADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLA-PFDVHLHYTDRHR-------- 224

Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240
                 L  + E+ +     ++ +++    DVV
Sbjct: 225 ------LPESVEKELNLTWHATREDMYPVCDVV 251

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Length = 333

 Score =  138 bits (351), Expect = 1e-39
 Identities = 47/188 (25%), Positives = 80/188 (42%), Gaps = 22/188 (11%)

Query: 53  EDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAV 112
           E+ +       DG+    T  +   +F  +   G K  +   VG +N+D+ A  +YGI +
Sbjct: 36  ENTVEWAKG-FDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRL 94

Query: 113 GNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 172
            N P       AE A + +L   R + +    ++AG Y+      F+G  L  QTVGV+G
Sbjct: 95  SNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYE--KAGTFIGKELGQQTVGVMG 152

Query: 173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE 232
            G IG    ++  +GF   +I YD Y           Y                  S+++
Sbjct: 153 TGHIGQVAIKLF-KGFGAKVIAYDPYPMKGDHPDFD-Y-----------------VSLED 193

Query: 233 VLREADVV 240
           + +++DV+
Sbjct: 194 LFKQSDVI 201

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A Length = 351

 Score =  137 bits (347), Expect = 5e-39
 Identities = 40/206 (19%), Positives = 72/206 (34%), Gaps = 29/206 (14%)

Query: 41  EICTQKKTILSVEDIIALIGDKCDGVI------GQLTEDWGETLFAALSRAGGKAFSNMA 94
           +            ++   I D    +I        +T +              K      
Sbjct: 42  QYIVTDDKEGPDCELEKHIPD-LHVLISTPFHPAYVTAE----RIKKAKNL--KLLLTAG 94

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
           +G +++D+ AA   G+ V    G    + AE      L   R  V     +  G ++   
Sbjct: 95  IGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWN-VA 153

Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
              +    L+G+T+G +GAGRIG    + +   F  NL+Y+D  Q              +
Sbjct: 154 GIAYRAYDLEGKTIGTVGAGRIGKLLLQRLK-PFGCNLLYHDRLQ--------------M 198

Query: 215 KANGEQPVTWKRASSMDEVLREADVV 240
               E+    K    ++E+L + DV+
Sbjct: 199 APELEKETGAKFVEDLNEMLPKCDVI 224

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} Length = 290

 Score =  133 bits (336), Expect = 7e-38
 Identities = 42/203 (20%), Positives = 76/203 (37%), Gaps = 28/203 (13%)

Query: 40  VEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGG--KAFSNMAVGY 97
           +++         V +I   + D  D        D    +       G   K    ++ G 
Sbjct: 1   LDVYVNFPADGHVREIAKTVLDGFDLHWYPDYYDAEAQVIKDRYVLGKRTKMIQAISAGV 60

Query: 98  NNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNL 157
           +++DVN   +  +   N     + + AE A +L LA A+ I+E +E M+AG++       
Sbjct: 61  DHIDVNGIPENVVLCSNAGA-YSISVAEHAFALLLAHAKNILENNELMKAGIFRQSP--- 116

Query: 158 FVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN 217
               LL G+ +G++G G IG   A +  + F M +I Y                   +  
Sbjct: 117 --TTLLYGKALGILGYGGIGRRVAHLA-KAFGMRVIAYTRSSVD-------------QNV 160

Query: 218 GEQPVTWKRASSMDEVLREADVV 240
                      S  ++ R++D V
Sbjct: 161 DVISE------SPADLFRQSDFV 177

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} Length = 335

 Score =  128 bits (323), Expect = 1e-35
 Identities = 62/220 (28%), Positives = 99/220 (45%), Gaps = 45/220 (20%)

Query: 30  INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVI----GQLTEDWGETLFAA---- 81
             +L +   +V      K  LS E++IA + D C+G+I     ++T    + + AA    
Sbjct: 40  RKILQDGGLQVVE----KQNLSKEELIAELQD-CEGLIVRSATKVTA---DVINAAEKLQ 91

Query: 82  -LSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVE 140
            + RAG         G +NVD+ AA + GI V NTP   + + AEL   + +  AR+I +
Sbjct: 92  VVGRAG--------TGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQ 143

Query: 141 ADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200
           A   M+ G    W    F+G  L G+T+G++G GRIG   A  M + F M  I YD   +
Sbjct: 144 ATASMKDG---KWERKKFMGTELNGKTLGILGLGRIGREVATRM-QSFGMKTIGYDPIIS 199

Query: 201 TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240
               +   ++G          V       ++E+    D +
Sbjct: 200 ---PEVSASFG----------VQQL---PLEEIWPLCDFI 223

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} Length = 313

 Score =  126 bits (319), Expect = 3e-35
 Identities = 49/220 (22%), Positives = 95/220 (43%), Gaps = 47/220 (21%)

Query: 30  INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVI----GQLTEDWGETLFAA---- 81
           I  L E+  +V+        +S E+++ +IG+  D ++     ++T+   + +       
Sbjct: 19  IKTLREKGIQVDY----MPEISKEELLNIIGN-YDIIVVRSRTKVTK---DVIEKGKKLK 70

Query: 82  -LSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVE 140
            ++RAG        +G +N+D   A K  I V   PG  T++  EL   L +AAAR++  
Sbjct: 71  IIARAG--------IGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYT 122

Query: 141 ADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200
           +    ++G    +      G  L G+T+G++G GRIG+    +      M ++ YD+   
Sbjct: 123 SMALAKSG---IF--KKIEGLELAGKTIGIVGFGRIGTKVGIIA-NAMGMKVLAYDILDI 176

Query: 201 TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240
               +                       S++E+L+ +DV+
Sbjct: 177 ---REKAEKIN----------AKA---VSLEELLKNSDVI 200

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Length = 529

 Score =  130 bits (328), Expect = 4e-35
 Identities = 53/208 (25%), Positives = 89/208 (42%), Gaps = 27/208 (12%)

Query: 33  LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN 92
            +     V            + ++A + +  D ++ +        + AA  +   K  + 
Sbjct: 20  ALGDQVEVRW----VDGPDRDKLLAAVPE-ADALLVRSATTVDAEVLAAAPKL--KIVAR 72

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152
             VG +NVDV+AA   G+ V N P     + AE A +L LAA+R+I  AD  +R      
Sbjct: 73  AGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREH---T 129

Query: 153 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
           W  + F G  + G+TVGV+G GRIG   A+ +   F   ++ YD         +V+    
Sbjct: 130 WKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRI-AAFGAYVVAYD--------PYVSP--A 178

Query: 213 FLKANGEQPVTWKRASSMDEVLREADVV 240
                G + ++       D++L  AD +
Sbjct: 179 RAAQLGIELLSL------DDLLARADFI 200

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} Length = 352

 Score =  126 bits (320), Expect = 4e-35
 Identities = 50/230 (21%), Positives = 87/230 (37%), Gaps = 48/230 (20%)

Query: 29  WINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIG-----QLTEDWGETLFAAL- 82
             +LL + + +V       T+  V  + A + D  + ++      ++T      L   L 
Sbjct: 20  CFSLLQDHEVKV----FNNTVKGVGQLAARVAD-VEALVLIRERTRVTRQ----LLDRLP 70

Query: 83  -----SRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARR 137
                S+ G            ++D+ A    G+ V    G      AEL  +L +AA RR
Sbjct: 71  KLKIISQTGRV----SRDAGGHIDLEACTDKGVVVLEGKGS-PVAPAELTWALVMAAQRR 125

Query: 138 IVEADEFMRAG-------LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM 190
           I +    ++ G             PN  +G +LKGQT+G+ G G+IG   A      F M
Sbjct: 126 IPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYG-RAFGM 184

Query: 191 NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240
           N++                +G+       +   +  A S D +  ++DV+
Sbjct: 185 NVL---------------VWGRENSKERARADGFAVAESKDALFEQSDVL 219

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Length = 416

 Score =  126 bits (319), Expect = 2e-34
 Identities = 58/210 (27%), Positives = 83/210 (39%), Gaps = 45/210 (21%)

Query: 41  EICTQKKTILSVEDIIALIGDKCDGVI----GQLTEDWGETLFAALS------RAGGKAF 90
              T     L   D+I  I      +      QLTE+    +FAA +             
Sbjct: 38  TNVTHLPKALDKADLIKAISS-AHIIGIRSRTQLTEE----IFAAANRLIAVGCFS---- 88

Query: 91  SNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY 150
               VG N V++ AA K GI V N P   T + AEL     +   RRI        AG  
Sbjct: 89  ----VGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAG-- 142

Query: 151 DGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY 210
            GW         ++G+T+G++G G IGS    +  E   M + YYD     +L+      
Sbjct: 143 -GWEKTAIGSREVRGKTLGIVGYGNIGSQVGNLA-ESLGMTVRYYDTS--DKLQ------ 192

Query: 211 GQFLKANGEQPVTWKRASSMDEVLREADVV 240
                 N +       A+S+DE+L+ +DVV
Sbjct: 193 ----YGNVKP------AASLDELLKTSDVV 212

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Length = 404

 Score =  125 bits (315), Expect = 6e-34
 Identities = 49/207 (23%), Positives = 71/207 (34%), Gaps = 45/207 (21%)

Query: 44  TQKKTILSVEDIIALIGDKCDGVI----GQLTEDWGETLFAALS------RAGGKAFSNM 93
              K  L  E +   I D    +       LTED    +  A                  
Sbjct: 30  EFHKGALDDEQLKESIRD-AHFIGLRSRTHLTED----VINAAEKLVAIGAFA------- 77

Query: 94  AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW 153
            +G N VD++AA K GI V N P   T + AEL     L   R + EA+     G     
Sbjct: 78  -IGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRG---VG 133

Query: 154 LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF 213
                     +G+ +G+IG G IG+    +  E   M + +YD+     L          
Sbjct: 134 NKLAAGSFEARGKKLGIIGYGHIGTQLGILA-ESLGMYVYFYDIENKLPLG--------- 183

Query: 214 LKANGEQPVTWKRASSMDEVLREADVV 240
              N  Q         + ++L  +DVV
Sbjct: 184 ---NATQVQ------HLSDLLNMSDVV 201

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A Length = 364

 Score =  122 bits (308), Expect = 4e-33
 Identities = 49/216 (22%), Positives = 81/216 (37%), Gaps = 44/216 (20%)

Query: 40  VEICTQKKTILSVEDIIALIGDKCDGVI------GQLTEDWGETLFAA-----LSRAGGK 88
            E+ T          +   I D  D +I        +T+   E +  A     +  AG  
Sbjct: 39  HELITTSDKEGGNSVLDQHIPD-ADIIITTPFHPAYITK---ERIDKAKKLKLVVVAG-- 92

Query: 89  AFSNMAVGYNNVDVNAANKYG--IAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMR 146
                 VG +++D++  N+ G  I+V    G    + AE      L   R  V A E + 
Sbjct: 93  ------VGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQII 146

Query: 147 AGLYDGWLPNLFV--GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE 204
                 W           ++G+T+  IGAGRIG      +V  F    + Y  YQA   +
Sbjct: 147 NH---DWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLV-PFNPKELLYYDYQALPKD 202

Query: 205 KFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV 240
                         E+ V  +R  +++E++ +AD+V
Sbjct: 203 A-------------EEKVGARRVENIEELVAQADIV 225

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324

 Score =  110 bits (277), Expect = 5e-29
 Identities = 33/199 (16%), Positives = 63/199 (31%), Gaps = 27/199 (13%)

Query: 48  TILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGG--KAFSNMAVGYNNVDVNAA 105
           T      + A   D+ + + G         L   L+R     K    ++ G + + + A 
Sbjct: 26  TFKDAAAVTAADYDQIEVMYG-----NHPLLKTILARPTNQLKFVQVISAGVDYLPLKAL 80

Query: 106 NKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKG 165
              G+ V NT G+  +  +E   +  L+  R    A    R              + L G
Sbjct: 81  QAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGA---RQWALPMTTSTLTG 137

Query: 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK 225
           Q + + G G+IG + A        M++I  +       + F                   
Sbjct: 138 QQLLIYGTGQIGQSLAAKA-SALGMHVIGVN-TTGHPADHFHETVA-------------- 181

Query: 226 RASSMDEVLREADVVCTLC 244
             ++  + L  A+ +    
Sbjct: 182 -FTATADALATANFIVNAL 199

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Length = 380

 Score = 95.4 bits (238), Expect = 3e-23
 Identities = 29/147 (19%), Positives = 52/147 (35%), Gaps = 41/147 (27%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
           +G +++D++   + GIA  + PG       +      LA A                   
Sbjct: 67  IGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAE------------------ 108

Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
                G  L  +T GV+GAG++G     ++  G    ++  D  +  R            
Sbjct: 109 ---VRGADLAERTYGVVGAGQVGGRLVEVL-RGLGWKVLVCDPPRQAR------------ 152

Query: 215 KANGEQPVTWKRASSMDEVLREADVVC 241
                + V      S++ +L EADV+ 
Sbjct: 153 -EPDGEFV------SLERLLAEADVIS 172

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Length = 381

 Score = 95.0 bits (237), Expect = 6e-23
 Identities = 30/147 (20%), Positives = 50/147 (34%), Gaps = 41/147 (27%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
            G ++VD     + GI     PG       E   S  L  A R                 
Sbjct: 70  AGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAER----------------- 112

Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
                G  L+ +T+G++G G +GS     + E   +  +  D  +A R            
Sbjct: 113 ----DGFSLRDRTIGIVGVGNVGSRLQTRL-EALGIRTLLCDPPRAAR------------ 155

Query: 215 KANGEQPVTWKRASSMDEVLREADVVC 241
             +           ++DE+++EADV+ 
Sbjct: 156 -GDEGDFR------TLDELVQEADVLT 175

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Length = 324

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 26/136 (19%), Positives = 47/136 (34%), Gaps = 23/136 (16%)

Query: 109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTV 168
              + N  G+     +E      L+  R++    E  +  L   W         LKG+T+
Sbjct: 89  DYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRL---WQS--HPYQGLKGRTL 143

Query: 169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS 228
            ++G G IG   A    + F M ++            F   Y                  
Sbjct: 144 LILGTGSIGQHIAHTG-KHFGMKVLGVS-RSGRERAGFDQVYQ---------------LP 186

Query: 229 SMDEVLREAD-VVCTL 243
           +++++L +AD +V  L
Sbjct: 187 ALNKMLAQADVIVSVL 202

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A Length = 315

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 24/163 (14%), Positives = 45/163 (27%), Gaps = 29/163 (17%)

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGV------LTETTAELAASLSLAAARRIVEA 141
           KA   +  G + +         +   + P        +     E A S  L   RR  + 
Sbjct: 61  KAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFDDY 120

Query: 142 DEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201
                  L   W P        +  +VG++GAG +G+  A  +   +   L  +      
Sbjct: 121 QALKNQAL---WKP--LPEYTREEFSVGIMGAGVLGAKVAESLQ-AWGFPLRCWS-RSRK 173

Query: 202 RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD-VVCTL 243
                 +  G                  +   L +   ++  L
Sbjct: 174 SWPGVESYVG---------------REELRAFLNQTRVLINLL 201

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293

 Score = 41.9 bits (98), Expect = 9e-05
 Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 13/78 (16%)

Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 222
           + G  V V+G GR+G + AR         +                     +   G +P 
Sbjct: 153 IHGANVAVLGLGRVGMSVARKFA-ALGAKVKVGARESDLLAR---------IAEMGMEPF 202

Query: 223 TWKRASSMDEVLREADVV 240
              +     + LR+ DV 
Sbjct: 203 HISK---AAQELRDVDVC 217

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	244
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	100.0
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	100.0
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	100.0
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	100.0
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	100.0
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	100.0
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	100.0
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	100.0
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	100.0
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	100.0
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	100.0
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	100.0
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	100.0
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	100.0
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	100.0
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	100.0
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	100.0
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	100.0
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	100.0
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	100.0
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	100.0
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	100.0
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	100.0
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	100.0
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	100.0
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	100.0
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	100.0
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	100.0
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	100.0
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	100.0
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	100.0
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	99.97
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	99.97
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	99.93
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	99.87
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	99.77
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	99.77
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	99.57
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	99.48
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	99.46
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	99.44
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	99.26
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	99.24
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	99.19
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	99.17
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	99.04
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	98.79
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	98.78
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	98.65
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	98.62
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	98.61
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	98.54
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	98.53
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	98.5
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	98.45
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	98.42
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.42
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	98.33
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	98.32
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	98.3
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	98.26
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	98.25
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	98.25
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	98.24
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	98.15
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	98.13
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	98.13
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	98.12
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	98.1
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	98.1
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	97.37
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.09
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	98.08
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	98.08
4ezb_A	317	Uncharacterized conserved protein; structural geno	98.07
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	98.07
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	98.07
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	98.06
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	98.05
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	98.04
3l07_A	285	Bifunctional protein fold; structural genomics, ID	98.04
3qha_A	296	Putative oxidoreductase; seattle structural genomi	98.03
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	98.02
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	98.02
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	98.01
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	97.98
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	97.98
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	97.96
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	97.94
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	97.94
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	97.93
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	97.93
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	97.9
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	97.89
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	97.86
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	97.8
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	97.8
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	97.79
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.78
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	97.76
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	97.76
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	97.76
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	97.76
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	97.75
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	97.73
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	97.71
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.69
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	97.68
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	97.68
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.67
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	97.66
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	97.66
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	97.64
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	97.64
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	97.61
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	97.6
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	97.59
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	97.55
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	97.55
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.55
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	97.51
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.5
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	97.48
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	97.47
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.46
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	97.44
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	97.42
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	97.4
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.4
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.39
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	97.39
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.39
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	97.38
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.36
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	97.36
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	97.36
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	97.35
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	97.35
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	97.33
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	97.32
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	97.3
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	97.3
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	97.29
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	97.28
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.28
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	97.28
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	97.24
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	97.23
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	97.22
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	97.22
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	97.22
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	97.21
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	97.2
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.19
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	97.18
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	97.14
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.12
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	97.09
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	97.08
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	97.07
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	97.05
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	97.05
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	97.04
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	97.03
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	97.03
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.02
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.02
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	96.99
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	96.98
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	96.98
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	96.97
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	96.96
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	96.95
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	96.95
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	96.94
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	96.92
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	96.91
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	96.89
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	96.89
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.88
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	96.86
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	96.86
2duw_A	145	Putative COA-binding protein; ligand binding prote	96.81
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	96.81
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	96.79
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	96.79
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	96.73
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.71
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	96.71
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	96.7
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	96.7
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	96.7
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	96.67
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	96.67
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	96.64
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	96.64
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.63
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.63
1ydw_A	362	AX110P-like protein; structural genomics, protein	96.63
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	96.61
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	96.61
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	96.61
2i6u_A	307	Otcase, ornithine carbamoyltransferase; X-RAY crys	96.59
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	96.57
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	96.56
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	96.54
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	96.54
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	96.53
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	96.52
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	96.51
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	96.5
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	96.5
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	96.5
4had_A	350	Probable oxidoreductase protein; structural genomi	96.48
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	96.48
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	96.47
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	96.47
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	96.46
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	96.46
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.45
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	96.44
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	96.43
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	96.42
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.42
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	96.42
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	96.42
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	96.42
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	96.4
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	96.39
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	96.38
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	96.37
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	96.37
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	96.34
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	96.3
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	96.29
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	96.28
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	96.25
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	96.23
1vlv_A	325	Otcase, ornithine carbamoyltransferase; TM1097, st	96.22
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	96.22
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	96.21
1dxh_A	335	Ornithine carbamoyltransferase; transcarbamylase;	96.2
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	96.19
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	96.16
1pg5_A	299	Aspartate carbamoyltransferase; 2.60A {Sulfolobus	96.15
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	96.15
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.15
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	96.12
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	96.07
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.06
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.05
3h9e_O	346	Glyceraldehyde-3-phosphate dehydrogenase, testis-;	96.04
2w37_A	359	Ornithine carbamoyltransferase, catabolic; transca	96.03
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	96.02
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	96.01
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	96.01
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	96.01
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	96.0
1oth_A	321	Protein (ornithine transcarbamoylase); transferase	95.99
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	95.98
3d6n_B	291	Aspartate carbamoyltransferase; reactor, chamber,	95.98
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	95.98
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	95.95
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	95.95
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	95.94
1xq6_A	253	Unknown protein; structural genomics, protein stru	95.94
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	95.93
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	95.91
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	95.91
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	95.91
4amu_A	365	Ornithine carbamoyltransferase, catabolic; ornithi	95.9
3r7f_A	304	Aspartate carbamoyltransferase; aspartate transcar	95.88
1ml4_A	308	Aspartate transcarbamoylase; beta pleated sheet, p	95.87
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	95.86
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	95.86
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	95.85
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	95.83
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	95.82
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	95.81
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	95.81
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	95.8
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	95.8
2ef0_A	301	Ornithine carbamoyltransferase; TTHA1199, thermus	95.77
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	95.76
1pvv_A	315	Otcase, ornithine carbamoyltransferase; dodecamer;	95.75
4h3v_A	390	Oxidoreductase domain protein; structural genomics	95.71
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	95.71
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	95.71
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	95.69
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	95.69
3tl2_A	315	Malate dehydrogenase; center for structural genomi	95.66
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	95.65
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	95.64
1duv_G	333	Octase-1, ornithine transcarbamoylase; enzyme-inhi	95.64
4h31_A	358	Otcase, ornithine carbamoyltransferase; structural	95.63
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	95.63
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	95.62
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	95.6
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	95.59
4ekn_B	306	Aspartate carbamoyltransferase; atcase, aspartate	95.58
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	95.58
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	95.58
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	95.57
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	95.56
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	95.56
4ep1_A	340	Otcase, ornithine carbamoyltransferase; structural	95.54
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	95.52
2x5j_O	339	E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid	95.51
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	95.5
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	95.5
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	95.49
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	95.49
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	95.46
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	95.45
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	95.45
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	95.43
3q98_A	399	Transcarbamylase; rossmann fold, transferase; 2.00	95.42
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	95.42
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	95.35
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	95.33
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	95.32
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	95.32
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	95.32
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	95.31
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	95.3
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	95.29
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	95.29
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	95.29
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	95.28
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.23
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	95.22
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	95.22
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	95.2
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	95.19
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	95.19
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	95.19
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	95.19
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	95.19
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	95.18
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	95.18
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	95.18
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	95.17
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	95.17
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	95.17
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	95.16
3csu_A	310	Protein (aspartate carbamoyltransferase); transfer	95.16
1gad_O	330	D-glyceraldehyde-3-phosphate dehydrogenase; oxidor	95.14
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	95.13
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	95.12
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	95.11
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	95.1
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	95.09
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	95.08
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	95.08
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	95.05
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	95.05
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	95.04
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	95.03
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	95.03
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	95.01
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	95.0
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	94.98
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	94.96
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	94.94
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	94.94
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	94.94
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	94.93
2d2i_A	380	Glyceraldehyde 3-phosphate dehydrogenase; rossmann	94.93
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	94.92
3tpf_A	307	Otcase, ornithine carbamoyltransferase; structural	94.9
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	94.9
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	94.9
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	94.89
4f2g_A	309	Otcase 1, ornithine carbamoyltransferase 1; struct	94.89
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	94.88
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	94.86
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	94.86
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	94.85
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	94.84
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	94.84
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	94.84
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	94.83
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	94.83
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	94.82
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	94.81
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	94.8
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	94.8
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	94.79
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	94.79
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	94.78
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	94.77
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	94.77
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	94.77
1zq6_A	359	Otcase, ornithine carbamoyltransferase; alpha/beta	94.75
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	94.74
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	94.74
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	94.73
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	94.73
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	94.73
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	94.72
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	94.72
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	94.72
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	94.71
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	94.7
1rm4_O	337	Glyceraldehyde 3-phosphate dehydrogenase A; rossma	94.7
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	94.7
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	94.7
3grf_A	328	Ornithine carbamoyltransferase; ornithine transcar	94.69
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	94.69
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	94.68
3imf_A	257	Short chain dehydrogenase; structural genomics, in	94.67
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	94.65
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	94.64
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	94.63
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	94.63
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	94.63
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	94.62
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	94.62
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	94.62
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	94.61
3gd5_A	323	Otcase, ornithine carbamoyltransferase; structural	94.6
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	94.6
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	94.59
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	94.58
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	94.58
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	94.57
2yfk_A	418	Aspartate/ornithine carbamoyltransferase; transcar	94.57
1js1_X	324	Transcarbamylase; alpha/beta topology, two domains	94.56
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	94.56
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	94.55
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	94.55
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	94.54
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	94.54
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	94.53
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	94.52
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	94.51
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	94.51
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	94.5
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	94.5
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	94.45
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	94.44
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	94.41
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	94.41
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	94.4
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	94.39
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	94.38
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	94.36
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	94.36
3cxt_A	291	Dehydrogenase with different specificities; rossma	94.35
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	94.34
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	94.32
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	94.3
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	94.3
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	94.3
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	94.3
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	94.3
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	94.28
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	94.28
4a8t_A	339	Putrescine carbamoyltransferase; trabnsferase PALO	94.28
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	94.26
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	94.26
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	94.25
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	94.24
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	94.23
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	94.23
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	94.23
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	94.22
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	94.22
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	94.21
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	94.21
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	94.21
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	94.21
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	94.21
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	94.2
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	94.2
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	94.19
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	94.19
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	94.19
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	94.18
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	94.18
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	94.18
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	94.18
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	94.17
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	94.17
3rih_A	293	Short chain dehydrogenase or reductase; structural	94.15
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	94.11
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	94.09
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	94.09
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	94.09
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	94.09
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	94.07
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	94.07
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	94.06
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	94.05
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	94.05
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	94.04
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	94.03
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	94.03

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=100.00  E-value=1.9e-42  Score=306.74  Aligned_cols=215  Identities=26%  Similarity=0.401  Sum_probs=180.7

Q ss_pred             eeeeCCCCCeEEEEeCCCCchHHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHh-hcc
Q 026023            7 IEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAAL-SRA   85 (244)
Q Consensus         7 ~~~~~~~~~~~ilv~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~-p~l   85 (244)
                      +.-++++.++|||++.+++++ ..+.|++. +++.+.. .+...+++++.+.+++ +|+++++...++++++++++ |+|
T Consensus        20 ~~~~~~~~~~kvlv~~~~~~~-~~~~l~~~-~~v~~~~-~~~~~~~~~l~~~~~~-~d~li~~~~~~i~~~~l~~~~~~L   95 (345)
T 4g2n_A           20 FQSMSTHPIQKAFLCRRFTPA-IEAELRQR-FDLEVNL-EDTVLTPSGIASRAHG-AEVLFVTATEAITAEVIRKLQPGL   95 (345)
T ss_dssp             -------CCCEEEESSCCCHH-HHHHHHHH-SEEEECT-TCCCCCHHHHHHHTTT-CSEEEECTTSCBCHHHHHHTTTTC
T ss_pred             eeecccCCCCEEEEeCCCCHH-HHHHHHcc-CCEEEec-CCCCCCHHHHHHHhcC-CeEEEEeCCCCCCHHHHHhhcCCc
Confidence            344456778999999998876 56778775 6887543 2335689999999985 99999987678999999998 688


Q ss_pred             CCcEEEEcccCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCC
Q 026023           86 GGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKG  165 (244)
Q Consensus        86 ~~k~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g  165 (244)
                        |||++.|+|+||||++++.++||.|+|+|++++.+||||+++++|++.|+++.+.+.+++|.|.+|.+....+.+|.|
T Consensus        96 --k~I~~~~~G~D~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~r~g~W~~~~~~~~~g~~l~g  173 (345)
T 4g2n_A           96 --KTIATLSVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTG  173 (345)
T ss_dssp             --CEEEESSSCCTTBCHHHHHHTTCEEECCCSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCTTTTCBCCCTT
T ss_pred             --eEEEEcCCcccccCHHHHHhCCEEEEECCcccchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccccccCC
Confidence              999999999999999999999999999999999999999999999999999999999999999887654456789999


Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +||||||+|+||+.+|+++ ++|||+|++|||++.+....           .     +..+.+++++++++||+|++||
T Consensus       174 ktvGIIGlG~IG~~vA~~l-~~~G~~V~~~dr~~~~~~~~-----------~-----g~~~~~~l~ell~~sDvV~l~~  235 (345)
T 4g2n_A          174 RRLGIFGMGRIGRAIATRA-RGFGLAIHYHNRTRLSHALE-----------E-----GAIYHDTLDSLLGASDIFLIAA  235 (345)
T ss_dssp             CEEEEESCSHHHHHHHHHH-HTTTCEEEEECSSCCCHHHH-----------T-----TCEECSSHHHHHHTCSEEEECS
T ss_pred             CEEEEEEeChhHHHHHHHH-HHCCCEEEEECCCCcchhhh-----------c-----CCeEeCCHHHHHhhCCEEEEec
Confidence            9999999999999999997 99999999999987542111           0     1233469999999999999996

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=100.00  E-value=1.3e-40  Score=293.84  Aligned_cols=206  Identities=26%  Similarity=0.417  Sum_probs=177.2

Q ss_pred             CeEEEEeCCCCchHHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEcc
Q 026023           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA   94 (244)
Q Consensus        15 ~~~ilv~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~   94 (244)
                      +++||++.+++++ ..+.|++.+ ++.+.. .+...+++++.+.+.+ +|+++++...++++++++.+|+|  |||++.|
T Consensus         2 ~~kvlv~~~~~~~-~~~~l~~~~-~v~~~~-~~~~~~~~~~~~~~~~-~d~~i~~~~~~i~~~~l~~~~~L--k~I~~~~   75 (330)
T 4e5n_A            2 LPKLVITHRVHEE-ILQLLAPHC-ELITNQ-TDSTLTREEILRRCRD-AQAMMAFMPDRVDADFLQACPEL--RVIGCAL   75 (330)
T ss_dssp             CCEEEECSCCCHH-HHHHHTTTC-EEECCC-SSSCCCHHHHHHHHTT-CSEEEECTTCCBCHHHHHHCTTC--CEEEESS
T ss_pred             CCEEEEecCCCHH-HHHHHHhCC-eEEEec-CCCCCCHHHHHHHhCC-CeEEEEeCCCCCCHHHHhhCCCC--cEEEECC
Confidence            5789999988876 578887764 776433 2334688999999985 99999976778999999999999  9999999


Q ss_pred             cCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCC
Q 026023           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG  174 (244)
Q Consensus        95 aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G  174 (244)
                      +|+||||++++.++||.|+|+|++++.+||||+++++|++.|+++.+++.+++|.|..|.+. ..+.+|.|+||||+|+|
T Consensus        76 ~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~-~~~~~l~g~tvGIIG~G  154 (330)
T 4e5n_A           76 KGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPR-FYGTGLDNATVGFLGMG  154 (330)
T ss_dssp             SCCTTBCHHHHHHTTCEEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCSC-CCCCCSTTCEEEEECCS
T ss_pred             CcccccCHHHHHhcCcEEEeCCCCCchHHHHHHHHHHHHHHhChHHHHHHHHhCCccccCcc-ccCCccCCCEEEEEeeC
Confidence            99999999999999999999999999999999999999999999999999999999988653 45789999999999999


Q ss_pred             hHHHHHHHHHhccCCcEEEEEcCCcc-hHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          175 RIGSAYARMMVEGFKMNLIYYDLYQA-TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       175 ~IG~~vA~~la~afG~~V~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +||+.+|+++ ++|||+|++|||++. .+.+.   .+            ++ ...++++++++||+|++||
T Consensus       155 ~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~~~---~~------------g~-~~~~l~ell~~aDvV~l~~  208 (330)
T 4e5n_A          155 AIGLAMADRL-QGWGATLQYHEAKALDTQTEQ---RL------------GL-RQVACSELFASSDFILLAL  208 (330)
T ss_dssp             HHHHHHHHHT-TTSCCEEEEECSSCCCHHHHH---HH------------TE-EECCHHHHHHHCSEEEECC
T ss_pred             HHHHHHHHHH-HHCCCEEEEECCCCCcHhHHH---hc------------Cc-eeCCHHHHHhhCCEEEEcC
Confidence            9999999997 999999999999973 32111   11            11 2358999999999999996

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=100.00  E-value=2.7e-40  Score=292.37  Aligned_cols=204  Identities=26%  Similarity=0.361  Sum_probs=168.2

Q ss_pred             CCCCeEEEEeCCCCchHHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEE
Q 026023           12 PNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFS   91 (244)
Q Consensus        12 ~~~~~~ilv~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~   91 (244)
                      +|.+++||++.+++++ ..+.|++. +++..+..   ..+.+++.+.++ ++|++++++..++++++++++|+|  |+|+
T Consensus        27 ~~~~~~vl~~~~~~~~-~~~~L~~~-~~v~~~~~---~~~~~~~~~~~~-~~d~li~~~~~~i~~~~l~~~p~L--k~I~   98 (340)
T 4dgs_A           27 RNVKPDLLLVEPMMPF-VMDELQRN-YSVHRLYQ---AADRPALEAALP-SIRAVATGGGAGLSNEWMEKLPSL--GIIA   98 (340)
T ss_dssp             ------CEECSCCCHH-HHHTHHHH-SCCEETTC---GGGHHHHHHHGG-GCCEEEEETTTCBCHHHHHHCSSC--CEEE
T ss_pred             CCCCCEEEEECCCCHH-HHHHHhcC-CcEEEeCC---CCCHHHHHHHhC-CcEEEEEcCCCCCCHHHHhhCCCC--EEEE
Confidence            4567899999998876 56778664 67764422   236788888886 599999987778999999999999  9999


Q ss_pred             EcccCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEE
Q 026023           92 NMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI  171 (244)
Q Consensus        92 ~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIv  171 (244)
                      +.|+|+||||++++.++||.|+|+|++++.+||||+++++|++.|+++.+.+.+++|.|.++.. ...+.+|+|+|||||
T Consensus        99 ~~g~G~d~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~~~g~W~~~~~-~~~~~~l~gktiGII  177 (340)
T 4dgs_A           99 INGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDRLVREGRWAAGEQ-LPLGHSPKGKRIGVL  177 (340)
T ss_dssp             EESSCCTTBCHHHHHHTTCEEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCC-------CCCCCCTTCEEEEE
T ss_pred             ECCCCccccCHHHHHhCCEEEEECCCCCcchHHHHHHHHHHHHHhChHHHHHHHhcCCcccccC-cCccccccCCEEEEE
Confidence            9999999999999999999999999999999999999999999999999999999999975311 124679999999999


Q ss_pred             cCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       172 G~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      |+|+||+.+|+++ ++|||+|++|||++...                   .+.....+++|++++||+|++||
T Consensus       178 GlG~IG~~vA~~l-~~~G~~V~~~dr~~~~~-------------------~~~~~~~sl~ell~~aDvVil~v  230 (340)
T 4dgs_A          178 GLGQIGRALASRA-EAFGMSVRYWNRSTLSG-------------------VDWIAHQSPVDLARDSDVLAVCV  230 (340)
T ss_dssp             CCSHHHHHHHHHH-HTTTCEEEEECSSCCTT-------------------SCCEECSSHHHHHHTCSEEEECC
T ss_pred             CCCHHHHHHHHHH-HHCCCEEEEEcCCcccc-------------------cCceecCCHHHHHhcCCEEEEeC
Confidence            9999999999997 89999999999987541                   11223569999999999999996

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=100.00  E-value=5.7e-40  Score=296.16  Aligned_cols=206  Identities=27%  Similarity=0.334  Sum_probs=178.3

Q ss_pred             eCCCCCeEEEEeCCCCchHHHHHHHhCCC-eEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCc
Q 026023           10 WNPNGKYRVVSTKPMPGTRWINLLIEQDC-RVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGK   88 (244)
Q Consensus        10 ~~~~~~~~ilv~~~~~~~~~~~~l~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k   88 (244)
                      +-|..++||+++.++++. ..+.|++.++ ++++...   ..+++++.+.+++ +|++++....++++++++.+|+|  |
T Consensus        10 ~~~~~~~kIl~~~~i~~~-~~~~l~~~g~~~v~~~~~---~~~~~~l~~~~~~-~d~l~v~~~~~i~~~~l~~~p~L--k   82 (416)
T 3k5p_A           10 SLSRDRINVLLLEGISQT-AVEYFKSSGYTNVTHLPK---ALDKADLIKAISS-AHIIGIRSRTQLTEEIFAAANRL--I   82 (416)
T ss_dssp             --CGGGSCEEECSCCCHH-HHHHHHHTTCCCEEECSS---CCCHHHHHHHHTT-CSEEEECSSCCBCHHHHHHCTTC--C
T ss_pred             CCCCCCcEEEEECCCCHH-HHHHHHHCCCcEEEECCC---CCCHHHHHHHccC-CEEEEEcCCCCCCHHHHHhCCCc--E
Confidence            345678999999998875 5788888777 7765432   4688999999985 99998877778999999999999  9


Q ss_pred             EEEEcccCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEE
Q 026023           89 AFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTV  168 (244)
Q Consensus        89 ~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tv  168 (244)
                      +|++.++|+||||+++|.++||.|+|+|++++.+||||+++++|++.|+++.+.+.+++|.|.++.   ..+.+++|+|+
T Consensus        83 ~I~~~~~G~d~IDl~~a~~~GI~V~n~p~~n~~aVAE~~l~l~L~l~R~i~~~~~~~~~g~W~~~~---~~~~el~gktv  159 (416)
T 3k5p_A           83 AVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTA---IGSREVRGKTL  159 (416)
T ss_dssp             EEEECSSCCTTBCHHHHHHTTCCEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCC---TTCCCSTTCEE
T ss_pred             EEEECccccCccCHHHHHhcCcEEEeCCCcccHHHHHHHHHHHHHHhcccHHHHHhhhcccccccC---CCCccCCCCEE
Confidence            999999999999999999999999999999999999999999999999999999999999997532   34679999999


Q ss_pred             EEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       169 gIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      ||+|+|+||+.+|+++ ++|||+|++||++++...                  .......+++|++++||+|++||
T Consensus       160 GIIGlG~IG~~vA~~l-~~~G~~V~~yd~~~~~~~------------------~~~~~~~sl~ell~~aDvV~lhv  216 (416)
T 3k5p_A          160 GIVGYGNIGSQVGNLA-ESLGMTVRYYDTSDKLQY------------------GNVKPAASLDELLKTSDVVSLHV  216 (416)
T ss_dssp             EEECCSHHHHHHHHHH-HHTTCEEEEECTTCCCCB------------------TTBEECSSHHHHHHHCSEEEECC
T ss_pred             EEEeeCHHHHHHHHHH-HHCCCEEEEECCcchhcc------------------cCcEecCCHHHHHhhCCEEEEeC
Confidence            9999999999999997 999999999999864310                  01234579999999999999997

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=100.00  E-value=7.1e-40  Score=289.54  Aligned_cols=200  Identities=24%  Similarity=0.338  Sum_probs=163.1

Q ss_pred             eEEEEeCCCCch-H-HHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEc
Q 026023           16 YRVVSTKPMPGT-R-WINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (244)
Q Consensus        16 ~~ilv~~~~~~~-~-~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~   93 (244)
                      |+||++.....+ + +.+.+++.  .+.++..+....+++++    . ++|+++++...++++++++++|+|  |+|++.
T Consensus         1 Mkil~~~~~~~~~p~~~e~l~~~--~~~~~~~~~~~~~~~~l----~-~ad~i~v~~~~~i~~~~l~~~p~L--k~I~~~   71 (334)
T 3kb6_A            1 MNVLFTSVPQEDVPFYQEALKDL--SLKIYTTDVSKVPENEL----K-KAELISVFVYDKLTEELLSKMPRL--KLIHTR   71 (334)
T ss_dssp             -CEEECSCCTTHHHHHHHHTTTS--CEEECSSCGGGSCHHHH----H-HCSEEEECTTSCBCHHHHHTCTTC--CEEEES
T ss_pred             CEEEEeCCCcccCHHHHHHHHhC--CcEEEeCCcccCCHHHh----c-CCCEEEEeCCCCCCHHHHhcCCCC--cEEEEC
Confidence            678887643332 2 23334444  34444333223344444    3 599999988889999999999999  999999


Q ss_pred             ccCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcC
Q 026023           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (244)
Q Consensus        94 ~aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~  173 (244)
                      |+|+||||++++.++||.|+|+|++++.+||||+++++|++.|++..+.+.++++.|..|..  ..+.++.|+|+||+|+
T Consensus        72 ~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~r~~~~~~~~~~~~~~~~~~~--~~~~~l~g~tvGIiG~  149 (334)
T 3kb6_A           72 SVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAMILTLVKRLKRIEDRVKKLNFSQDSE--ILARELNRLTLGVIGT  149 (334)
T ss_dssp             SSCCTTBCHHHHHHHTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCGG--GCBCCGGGSEEEEECC
T ss_pred             CcccchhcHHHHHHCCCEEEECCCcCcHHHHHHHHHHHHHHhhccccccccccccccccccc--cccceecCcEEEEECc
Confidence            99999999999999999999999999999999999999999999999999999999976543  4578999999999999


Q ss_pred             ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       174 G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      |+||+++|+++ ++|||+|++|||++++...+.                 ...+.+|+|+|++||+|++||
T Consensus       150 G~IG~~va~~~-~~fg~~v~~~d~~~~~~~~~~-----------------~~~~~~l~ell~~sDivslh~  202 (334)
T 3kb6_A          150 GRIGSRVAMYG-LAFGMKVLCYDVVKREDLKEK-----------------GCVYTSLDELLKESDVISLHV  202 (334)
T ss_dssp             SHHHHHHHHHH-HHTTCEEEEECSSCCHHHHHT-----------------TCEECCHHHHHHHCSEEEECC
T ss_pred             chHHHHHHHhh-cccCceeeecCCccchhhhhc-----------------CceecCHHHHHhhCCEEEEcC
Confidence            99999999997 999999999999876643220                 123469999999999999997

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=100.00  E-value=2.1e-39  Score=292.94  Aligned_cols=203  Identities=24%  Similarity=0.281  Sum_probs=173.0

Q ss_pred             CCCeEEEEeCCCCchHHHHHHHhCCC-eEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEE
Q 026023           13 NGKYRVVSTKPMPGTRWINLLIEQDC-RVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFS   91 (244)
Q Consensus        13 ~~~~~ilv~~~~~~~~~~~~l~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~   91 (244)
                      ..+|||++..++++. ..+.|++.++ ++.+...   ..+++++.+.+.+ +|++++.+..++++++++.+|+|  |+|+
T Consensus         2 ~~~~kil~~~~~~~~-~~~~l~~~~~~~v~~~~~---~~~~~~l~~~~~~-~d~l~~~~~~~~~~~~l~~~~~L--k~I~   74 (404)
T 1sc6_A            2 KDKIKFLLVEGVHQK-ALESLRAAGYTNIEFHKG---ALDDEQLKESIRD-AHFIGLRSRTHLTEDVINAAEKL--VAIG   74 (404)
T ss_dssp             CSSCCEEECSCCCHH-HHHHHHHTTCCCEEECSS---CCCHHHHHHHTTS-CSEEEECSSCCBCHHHHHHCSSC--CEEE
T ss_pred             CCceEEEEeCCCCHH-HHHHHHhCCCcEEEEcCC---CCCHHHHHHHhcC-CeEEEEcCCCCCCHHHHhhCCCC--cEEE
Confidence            456789998887765 5678877777 6765432   3588999999985 99998876778999999999999  9999


Q ss_pred             EcccCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEE
Q 026023           92 NMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI  171 (244)
Q Consensus        92 ~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIv  171 (244)
                      +.|+|+||||++++.++||.|+|+|++|+.+||||+++++|++.|+++.+.+.+++|.|.++.   +.+.+++|+|+||+
T Consensus        75 ~~~~G~d~iD~~~a~~~GI~V~n~p~~n~~~vAE~~~~~~L~~~R~i~~~~~~~~~g~W~~~~---~~~~el~gktlGiI  151 (404)
T 1sc6_A           75 AFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLA---AGSFEARGKKLGII  151 (404)
T ss_dssp             ECSSCCTTBCHHHHHHTTCCEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC--------CCCSTTCEEEEE
T ss_pred             ECCcccCccCHHHHHhCCCEEEecCcccHHHHHHHHHHHHHHHHhChHHHHHHHHcCCccccC---CCccccCCCEEEEE
Confidence            999999999999999999999999999999999999999999999999999999999996432   34678999999999


Q ss_pred             cCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       172 G~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      |+|+||+.+|+++ ++|||+|++|||++....                  .......+++|++++||+|++||
T Consensus       152 GlG~IG~~vA~~l-~~~G~~V~~~d~~~~~~~------------------~~~~~~~~l~ell~~aDvV~l~~  205 (404)
T 1sc6_A          152 GYGHIGTQLGILA-ESLGMYVYFYDIENKLPL------------------GNATQVQHLSDLLNMSDVVSLHV  205 (404)
T ss_dssp             CCSHHHHHHHHHH-HHTTCEEEEECSSCCCCC------------------TTCEECSCHHHHHHHCSEEEECC
T ss_pred             eECHHHHHHHHHH-HHCCCEEEEEcCCchhcc------------------CCceecCCHHHHHhcCCEEEEcc
Confidence            9999999999997 999999999999764310                  01224468999999999999997

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=100.00  E-value=9.5e-39  Score=282.33  Aligned_cols=208  Identities=26%  Similarity=0.394  Sum_probs=171.9

Q ss_pred             eeCCCCCeEEEEeCCCCchHHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCc
Q 026023            9 VWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGK   88 (244)
Q Consensus         9 ~~~~~~~~~ilv~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k   88 (244)
                      +.+++.+++|+++.++.+. ..+.+++.++++....    ..+.+++.+.+.+ +|+++++...++++++++.+|+|  |
T Consensus        20 ~~~~~~~~~vli~~~~~~~-~~~~l~~~~~~v~~~~----~~~~~~~~~~~~~-~d~li~~~~~~~~~~~l~~~~~L--k   91 (335)
T 2g76_A           20 FQSMANLRKVLISDSLDPC-CRKILQDGGLQVVEKQ----NLSKEELIAELQD-CEGLIVRSATKVTADVINAAEKL--Q   91 (335)
T ss_dssp             ------CCEEEECSCCCHH-HHHHHHHHTCEEEECC----SCCHHHHHHHGGG-CSEEEECSSSCBCHHHHHHCSSC--C
T ss_pred             hhhhccceEEEEcCCCCHH-HHHHHHhCCCEEEECC----CCCHHHHHHHhcC-ceEEEEcCCCCCCHHHHhhCCCC--c
Confidence            3345566789998887654 5677777667775432    2478899998884 99999987678999999999999  9


Q ss_pred             EEEEcccCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEE
Q 026023           89 AFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTV  168 (244)
Q Consensus        89 ~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tv  168 (244)
                      ||++.|+|+||||++++.++||.|+|+|++++.+||||+++++|++.|+++.+.+.+++|.|...   ...+.++.|+||
T Consensus        92 ~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~---~~~~~~l~g~tv  168 (335)
T 2g76_A           92 VVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERK---KFMGTELNGKTL  168 (335)
T ss_dssp             EEEESSSSCTTBCHHHHHHHTCEEECCSSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCTG---GGCBCCCTTCEE
T ss_pred             EEEECCCCcchhChHHHHhCCeEEEECCCccchHHHHHHHHHHHHHHhchHHHHHHHHcCCCCcc---CCCCcCCCcCEE
Confidence            99999999999999999999999999999999999999999999999999999999999998631   134678999999


Q ss_pred             EEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       169 gIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      ||+|+|+||+.+|+++ ++|||+|++|||++.+....   .+            ++ ...++++++++||+|++||
T Consensus       169 gIIGlG~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~~---~~------------g~-~~~~l~ell~~aDvV~l~~  227 (335)
T 2g76_A          169 GILGLGRIGREVATRM-QSFGMKTIGYDPIISPEVSA---SF------------GV-QQLPLEEIWPLCDFITVHT  227 (335)
T ss_dssp             EEECCSHHHHHHHHHH-HTTTCEEEEECSSSCHHHHH---HT------------TC-EECCHHHHGGGCSEEEECC
T ss_pred             EEEeECHHHHHHHHHH-HHCCCEEEEECCCcchhhhh---hc------------Cc-eeCCHHHHHhcCCEEEEec
Confidence            9999999999999997 99999999999987652111   11            11 1258999999999999996

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=2.3e-38  Score=278.67  Aligned_cols=207  Identities=27%  Similarity=0.467  Sum_probs=172.7

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhc-cCCcEEEEcc
Q 026023           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSR-AGGKAFSNMA   94 (244)
Q Consensus        16 ~~ilv~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~-l~~k~I~~~~   94 (244)
                      ++|+++.+++++ ..+.|++. +++++.... ...+++++.+.+.+ +|+++++...++++++++++|+ |  |||++.|
T Consensus         2 ~~vl~~~~~~~~-~~~~l~~~-~~~~~~~~~-~~~~~~~~~~~~~~-~d~~i~~~~~~~~~~~l~~~~~~L--k~I~~~~   75 (320)
T 1gdh_A            2 KKILITWPLPEA-AMARARES-YDVIAHGDD-PKITIDEMIETAKS-VDALLITLNEKCRKEVIDRIPENI--KCISTYS   75 (320)
T ss_dssp             CEEEESSCCCHH-HHHHHHTT-SEEEECCST-TCCCHHHHHHHHTT-CSEEEEETTSCBCHHHHHHSCTTC--CEEEEES
T ss_pred             cEEEEcCCCCHH-HHHHHHhc-CCEEEecCC-CCCCHHHHHHHhcC-CEEEEECCCCCCCHHHHHhCCccc--eEEEECC
Confidence            578888776654 56777654 577654322 23578899999985 9999988666899999999999 8  9999999


Q ss_pred             cCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCC
Q 026023           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG  174 (244)
Q Consensus        95 aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G  174 (244)
                      +|+||||++++.++||.|+|+|++++.+||||+++++|++.|+++.+.+.+++|.|..|.+....+.++.|+||||||+|
T Consensus        76 ~G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G  155 (320)
T 1gdh_A           76 IGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFG  155 (320)
T ss_dssp             SCCTTBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCS
T ss_pred             cccccccHHHHHhCCcEEEEcCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHcCCCCccccccccCcCCCCCEEEEECcC
Confidence            99999999999999999999999999999999999999999999999999999999766433345679999999999999


Q ss_pred             hHHHHHHHHHhccCCcEEEEEcC-CcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          175 RIGSAYARMMVEGFKMNLIYYDL-YQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       175 ~IG~~vA~~la~afG~~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +||+.+|+++ ++|||+|++||| ++.+....   .+            +....+++++++++||+|++|+
T Consensus       156 ~IG~~~A~~l-~~~G~~V~~~d~~~~~~~~~~---~~------------g~~~~~~l~ell~~aDvVil~~  210 (320)
T 1gdh_A          156 SIGQALAKRA-QGFDMDIDYFDTHRASSSDEA---SY------------QATFHDSLDSLLSVSQFFSLNA  210 (320)
T ss_dssp             HHHHHHHHHH-HTTTCEEEEECSSCCCHHHHH---HH------------TCEECSSHHHHHHHCSEEEECC
T ss_pred             HHHHHHHHHH-HHCCCEEEEECCCCcChhhhh---hc------------CcEEcCCHHHHHhhCCEEEEec
Confidence            9999999997 899999999999 77652111   11            1122348999999999999996

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=100.00  E-value=1.3e-38  Score=279.10  Aligned_cols=201  Identities=34%  Similarity=0.559  Sum_probs=172.6

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEccc
Q 026023           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (244)
Q Consensus        16 ~~ilv~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~a   95 (244)
                      |+|+++.+++++ ..+.+++.++++.+....  ..+.+++.+.+.+ +|+++++...++++++++++|+|  |||++.|+
T Consensus         1 ~~vl~~~~~~~~-~~~~l~~~g~~v~~~~~~--~~~~~~~~~~~~~-~d~~i~~~~~~~~~~~l~~~~~L--k~i~~~~~   74 (311)
T 2cuk_A            1 MRVLVTRTLPGK-ALDRLRERGLEVEVHRGL--FLPKAELLKRVEG-AVGLIPTVEDRIDAEVMDRAKGL--KVIACYSV   74 (311)
T ss_dssp             CEEEESSCCSSS-TTHHHHHTTCEEEECCSS--CCCHHHHHHHHTT-CSEEECCTTSCBCHHHHHHSTTC--CEEECSSS
T ss_pred             CEEEEeCCCCHH-HHHHHHhcCCeEEEecCC--CCCHHHHHHHhcC-CeEEEEcCCCCCCHHHHhhCCCC--eEEEECCc
Confidence            467887776654 467787776788654322  3578899999985 99999876668999999999999  99999999


Q ss_pred             CCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh
Q 026023           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR  175 (244)
Q Consensus        96 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~  175 (244)
                      |+||+|++++.++||.|+|+||+++.+||||+++++|++.|+++.+.+.+++|.|..|.+....+.++.|+||||+|+|+
T Consensus        75 G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G~  154 (311)
T 2cuk_A           75 GVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGR  154 (311)
T ss_dssp             CCTTBCHHHHHTTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSH
T ss_pred             CccccCHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCccccccccCcCCCCCEEEEEEECH
Confidence            99999999999999999999999999999999999999999999999999999997654333346789999999999999


Q ss_pred             HHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       176 IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      ||+.+|+++ ++|||+|++|||++...                .    . ...++++++++||+|++|+
T Consensus       155 IG~~~A~~l-~~~G~~V~~~d~~~~~~----------------~----~-~~~~l~ell~~aDvV~l~~  201 (311)
T 2cuk_A          155 IGQAVAKRA-LAFGMRVVYHARTPKPL----------------P----Y-PFLSLEELLKEADVVSLHT  201 (311)
T ss_dssp             HHHHHHHHH-HHTTCEEEEECSSCCSS----------------S----S-CBCCHHHHHHHCSEEEECC
T ss_pred             HHHHHHHHH-HHCCCEEEEECCCCccc----------------c----c-ccCCHHHHHhhCCEEEEeC
Confidence            999999997 89999999999987541                0    1 2468999999999999996

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=100.00  E-value=4.6e-39  Score=284.77  Aligned_cols=204  Identities=25%  Similarity=0.379  Sum_probs=165.4

Q ss_pred             CeEEEEeCCCCc-hHHHHHH-HhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHH-HHHHhhccCCcEEE
Q 026023           15 KYRVVSTKPMPG-TRWINLL-IEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGET-LFAALSRAGGKAFS   91 (244)
Q Consensus        15 ~~~ilv~~~~~~-~~~~~~l-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~-~l~~~p~l~~k~I~   91 (244)
                      ||||++....+. .++++.+ ++.++++.+....   .+ +++.+.++ ++|++++....+++++ +++++|+.++|+|+
T Consensus         1 Mmki~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~-~~~~~~~~-~~d~li~~~~~~~~~~~~l~~~~~~~Lk~I~   75 (343)
T 2yq5_A            1 MTKIAMYNVSPIEVPYIEDWAKKNDVEIKTTDQA---LT-SATVDLAE-GCSSVSLKPLGPVDEEVVYQKLSEYGVKCIG   75 (343)
T ss_dssp             -CEEEEESCCGGGHHHHHHHHHHHTCEEEEESSC---CS-TTGGGGGT-TCSEEEECCSSCBCCHHHHHHHHHTTCCEEE
T ss_pred             CceEEEEecCcccHHHHHHHHHhCCeEEEECCCC---CC-HHHHHHhc-CCcEEEEcCCCCcCHHHHHHhccccCceEEE
Confidence            478888774332 2344444 4457788765432   23 56667787 4999999877789999 99999864459999


Q ss_pred             EcccCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHH-cCCCCCCCCCcccccccCCCEEEE
Q 026023           92 NMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMR-AGLYDGWLPNLFVGNLLKGQTVGV  170 (244)
Q Consensus        92 ~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~-~~~w~~~~~~~~~~~~l~g~tvgI  170 (244)
                      +.|+|+||||+++++++||.|+|+|++++.+||||+++++|++.|++..+.+.++ +|+|. |... ..+.+|.|+||||
T Consensus        76 ~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~g~~~-w~~~-~~~~~l~gktvgI  153 (343)
T 2yq5_A           76 LRIVGFNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFT-WPSN-LISNEIYNLTVGL  153 (343)
T ss_dssp             ESSSCCTTBCSSTTCC--CEEECCSCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCC-CCGG-GCBCCGGGSEEEE
T ss_pred             ECceeecccchhHHHhCCEEEEECCCCCcHHHHHHHHHHHHHHHhchHHHHHHHHHcCCcc-cccC-CCccccCCCeEEE
Confidence            9999999999999999999999999999999999999999999999999999999 99886 6432 4578999999999


Q ss_pred             EcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       171 vG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +|+|+||+.+|+++ ++|||+|++|||++.+..+.                  .....++++++++||+|++||
T Consensus       154 iGlG~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~~------------------~~~~~~l~ell~~aDvV~l~~  208 (343)
T 2yq5_A          154 IGVGHIGSAVAEIF-SAMGAKVIAYDVAYNPEFEP------------------FLTYTDFDTVLKEADIVSLHT  208 (343)
T ss_dssp             ECCSHHHHHHHHHH-HHTTCEEEEECSSCCGGGTT------------------TCEECCHHHHHHHCSEEEECC
T ss_pred             EecCHHHHHHHHHH-hhCCCEEEEECCChhhhhhc------------------cccccCHHHHHhcCCEEEEcC
Confidence            99999999999997 99999999999998652111                  112358999999999999997

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=100.00  E-value=4.2e-39  Score=282.99  Aligned_cols=199  Identities=17%  Similarity=0.195  Sum_probs=166.5

Q ss_pred             CCCeEEEEeCCCCchHHHHHH-HhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEE
Q 026023           13 NGKYRVVSTKPMPGTRWINLL-IEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFS   91 (244)
Q Consensus        13 ~~~~~ilv~~~~~~~~~~~~l-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~   91 (244)
                      +.+|||+++.+..+. +.+.| ++...++++...    .+.+++.+.+.+ +|+++++.  ++++++++++|+|  |||+
T Consensus         3 ~~~mkili~~~~~~~-~~~~L~~~~~p~~~~~~~----~~~~~~~~~~~~-ad~li~~~--~~~~~~l~~~~~L--k~I~   72 (324)
T 3hg7_A            3 LSQRTLLLLSQDNAH-YERLLKAAHLPHLRILRA----DNQSDAEKLIGE-AHILMAEP--ARAKPLLAKANKL--SWFQ   72 (324)
T ss_dssp             -CCEEEEEESTTHHH-HHHHHHHSCCTTEEEEEC----SSHHHHHHHGGG-CSEEEECH--HHHGGGGGGCTTC--CEEE
T ss_pred             ccccEEEEecCCCHH-HHHHHhhccCCCeEEEeC----CChhHHHHHhCC-CEEEEECC--CCCHHHHhhCCCc--eEEE
Confidence            345999999988765 78888 666556665433    256788888885 99999853  4667889999999  9999


Q ss_pred             EcccCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEE
Q 026023           92 NMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI  171 (244)
Q Consensus        92 ~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIv  171 (244)
                      +.|+|+|++|.+++.+ ||.|+|+||+++.+||||+++++|++.|+++.+.+.+++|.|...     .+.++.|+||||+
T Consensus        73 ~~~~G~d~id~~~~~~-gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~-----~~~~l~g~tvGII  146 (324)
T 3hg7_A           73 STYAGVDVLLDARCRR-DYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQSH-----PYQGLKGRTLLIL  146 (324)
T ss_dssp             ESSSCCGGGSCTTSCC-SSEEECCCSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC-----CCCCSTTCEEEEE
T ss_pred             ECCCCCCccChHHHhC-CEEEEECCCcChHHHHHHHHHHHHHHHhChHHHHHHHhhCCCcCC-----CCcccccceEEEE
Confidence            9999999999988755 999999999999999999999999999999999999999998752     3578999999999


Q ss_pred             cCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       172 G~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      |+|+||+.+|++| ++|||+|++|||++++. +.               ........+++|++++||+|++||
T Consensus       147 GlG~IG~~vA~~l-~~~G~~V~~~dr~~~~~-~~---------------~~~~~~~~~l~ell~~aDvV~l~l  202 (324)
T 3hg7_A          147 GTGSIGQHIAHTG-KHFGMKVLGVSRSGRER-AG---------------FDQVYQLPALNKMLAQADVIVSVL  202 (324)
T ss_dssp             CCSHHHHHHHHHH-HHTTCEEEEECSSCCCC-TT---------------CSEEECGGGHHHHHHTCSEEEECC
T ss_pred             EECHHHHHHHHHH-HhCCCEEEEEcCChHHh-hh---------------hhcccccCCHHHHHhhCCEEEEeC
Confidence            9999999999997 99999999999987541 11               011123468999999999999996

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=100.00  E-value=5.2e-38  Score=274.94  Aligned_cols=202  Identities=28%  Similarity=0.450  Sum_probs=170.0

Q ss_pred             CeEEEEeCCCCchHHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEcc
Q 026023           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA   94 (244)
Q Consensus        15 ~~~ilv~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~   94 (244)
                      +|+|+++.++++. ..+.+++.++++... .   ..+.+++.+.+.+ +|+++++...++++++++.+|+|  |||++.|
T Consensus         3 ~~~il~~~~~~~~-~~~~l~~~~~~~~~~-~---~~~~~~~~~~~~~-~d~~i~~~~~~~~~~~l~~~~~L--k~I~~~~   74 (307)
T 1wwk_A            3 RMKVLVAAPLHEK-AIQVLKDAGLEVIYE-E---YPDEDRLVELVKD-VEAIIVRSKPKVTRRVIESAPKL--KVIARAG   74 (307)
T ss_dssp             -CEEEECSCCCHH-HHHHHHHTTCEEEEC-S---SCCHHHHHHHSTT-CSEEEESSCSCBCHHHHTTCTTC--CEEEESS
T ss_pred             ceEEEEeCCCCHH-HHHHHHhCCeEEEeC-C---CCCHHHHHHHhcC-CEEEEEcCCCCCCHHHHhhCCCC--eEEEECC
Confidence            4789988877654 567787766777532 1   2477888888885 99999876657999999999999  9999999


Q ss_pred             cCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCC
Q 026023           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG  174 (244)
Q Consensus        95 aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G  174 (244)
                      +|+||+|++++.++||.|+|+||+++.+||||+++++|++.|+++.+.+.+++|.|.+.   ...+.++.|+||||+|+|
T Consensus        75 ~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~---~~~~~~l~g~~vgIiG~G  151 (307)
T 1wwk_A           75 VGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMREGVWAKK---EAMGIELEGKTIGIIGFG  151 (307)
T ss_dssp             SCCTTBCHHHHHHHTCEEECCGGGGHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCTT---TCCBCCCTTCEEEEECCS
T ss_pred             ccccccCHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcc---CcCCcccCCceEEEEccC
Confidence            99999999999999999999999999999999999999999999999999999998631   134578999999999999


Q ss_pred             hHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          175 RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       175 ~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +||+.+|+++ ++|||+|++|||++.+...   ..+            ++ ...++++++++||+|++|+
T Consensus       152 ~IG~~~A~~l-~~~G~~V~~~d~~~~~~~~---~~~------------g~-~~~~l~ell~~aDvV~l~~  204 (307)
T 1wwk_A          152 RIGYQVAKIA-NALGMNILLYDPYPNEERA---KEV------------NG-KFVDLETLLKESDVVTIHV  204 (307)
T ss_dssp             HHHHHHHHHH-HHTTCEEEEECSSCCHHHH---HHT------------TC-EECCHHHHHHHCSEEEECC
T ss_pred             HHHHHHHHHH-HHCCCEEEEECCCCChhhH---hhc------------Cc-cccCHHHHHhhCCEEEEec
Confidence            9999999997 9999999999999865211   111            11 2248999999999999996

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=100.00  E-value=2e-37  Score=271.88  Aligned_cols=200  Identities=25%  Similarity=0.445  Sum_probs=170.3

Q ss_pred             CeEEEEeCCCCchHHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEcc
Q 026023           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA   94 (244)
Q Consensus        15 ~~~ilv~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~   94 (244)
                      +|+|+++.++++. ..+.|++.++++.+ ..   ..+.+++.+.+.+ +|++++....++++++++.+|+|  |||++.|
T Consensus         5 ~mkil~~~~~~~~-~~~~l~~~~~~v~~-~~---~~~~~~~~~~~~~-~d~~i~~~~~~~~~~~l~~~~~L--k~I~~~~   76 (313)
T 2ekl_A            5 TVKALITDPIDEI-LIKTLREKGIQVDY-MP---EISKEELLNIIGN-YDIIVVRSRTKVTKDVIEKGKKL--KIIARAG   76 (313)
T ss_dssp             CCEEEECSCCCHH-HHHHHHHTTCEEEE-CT---TCCHHHHHHHGGG-CSEEEECSSSCBCHHHHHHCTTC--CEEEECS
T ss_pred             ceEEEEECCCCHH-HHHHHHhCCcEEEe-CC---CCCHHHHHHHhcC-CeEEEEcCCCCCCHHHHhhCCCC--eEEEEcC
Confidence            4689998877654 57788777777743 11   2478899988885 99998865567999999999999  9999999


Q ss_pred             cCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCC
Q 026023           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG  174 (244)
Q Consensus        95 aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G  174 (244)
                      +|+||+|.+++.++||.|+|+||+++.+||||+++++|++.|+++.+.+.+++|.|..     ..+.++.|+||||+|+|
T Consensus        77 ~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~-----~~~~~l~g~~vgIIG~G  151 (313)
T 2ekl_A           77 IGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKSGIFKK-----IEGLELAGKTIGIVGFG  151 (313)
T ss_dssp             SCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCC-----CCCCCCTTCEEEEESCS
T ss_pred             CCCCccCHHHHHhCCeEEEeCCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCC-----CCCCCCCCCEEEEEeeC
Confidence            9999999999999999999999999999999999999999999999999999999852     34578999999999999


Q ss_pred             hHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          175 RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       175 ~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +||+.+|+++ ++|||+|++|||++.....   ..+            +.. ..++++++++||+|++|+
T Consensus       152 ~IG~~~A~~l-~~~G~~V~~~d~~~~~~~~---~~~------------g~~-~~~l~ell~~aDvVvl~~  204 (313)
T 2ekl_A          152 RIGTKVGIIA-NAMGMKVLAYDILDIREKA---EKI------------NAK-AVSLEELLKNSDVISLHV  204 (313)
T ss_dssp             HHHHHHHHHH-HHTTCEEEEECSSCCHHHH---HHT------------TCE-ECCHHHHHHHCSEEEECC
T ss_pred             HHHHHHHHHH-HHCCCEEEEECCCcchhHH---Hhc------------Cce-ecCHHHHHhhCCEEEEec
Confidence            9999999997 9999999999999865311   111            112 248999999999999996

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=100.00  E-value=5e-38  Score=279.30  Aligned_cols=205  Identities=23%  Similarity=0.354  Sum_probs=168.1

Q ss_pred             eEEEEeCCCCchH----HHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEe-ccCccccHHHHHHhhccCCcEE
Q 026023           16 YRVVSTKPMPGTR----WINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIG-QLTEDWGETLFAALSRAGGKAF   90 (244)
Q Consensus        16 ~~ilv~~~~~~~~----~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~-~~~~~~~~~~l~~~p~l~~k~I   90 (244)
                      |||++...+....    ..+.+.  +++++++..+  ..+++++.+.+.+ +|++++ +...++++++++.+|+|  |+|
T Consensus         3 mki~~~d~~~~~~~~~~~~~~l~--~~~v~~~~~~--~~~~~~l~~~~~~-ad~li~~~~~~~~~~~~l~~~~~L--k~I   75 (352)
T 3gg9_A            3 LKIAVLDDYQDAVRKLDCFSLLQ--DHEVKVFNNT--VKGVGQLAARVAD-VEALVLIRERTRVTRQLLDRLPKL--KII   75 (352)
T ss_dssp             CEEEECCCTTCCGGGSGGGGGGT--TSEEEECCSC--CCSHHHHHHHTTT-CSEEEECTTSSCBCHHHHTTCTTC--CEE
T ss_pred             eEEEEEcCccccchhhhhhhhhc--CceEEEecCC--CCCHHHHHHHhcC-CeEEEEeCCCCCCCHHHHhhCCCC--eEE
Confidence            7888877654321    112342  4788765432  3478899999985 999998 45578999999999999  999


Q ss_pred             EEcccCC----CccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCC-------CCCCccc
Q 026023           91 SNMAVGY----NNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG-------WLPNLFV  159 (244)
Q Consensus        91 ~~~~aG~----d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~-------~~~~~~~  159 (244)
                      ++.|+|+    ||||++++.++||.|+|+||+ +.+||||+++++|++.|+++.+.+.+++|.|..       |.+....
T Consensus        76 ~~~g~G~~~~~d~id~~~a~~~gI~V~n~pg~-~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~~  154 (352)
T 3gg9_A           76 SQTGRVSRDAGGHIDLEACTDKGVVVLEGKGS-PVAPAELTWALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGI  154 (352)
T ss_dssp             EESSCCCCSSSCSBCHHHHHHHTCEEECCCCC-SHHHHHHHHHHHHHHHTTHHHHHHHHHTTCTTCCCCCCTTSCTTTTS
T ss_pred             EEeCcccCCccCcccHHHHHhCCeEEEECCCC-cHHHHHHHHHHHHHHHhhHHHHHHHHHcCCCCccccccccccccccc
Confidence            9999999    999999999999999999999 999999999999999999999999999999974       3333335


Q ss_pred             ccccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (244)
Q Consensus       160 ~~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~  239 (244)
                      +.+|.|+||||+|+|+||+.+|+++ ++|||+|++|||+++.....  +             .++...+++++++++||+
T Consensus       155 ~~~l~g~tvGIIGlG~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~~--~-------------~g~~~~~~l~ell~~aDi  218 (352)
T 3gg9_A          155 GRVLKGQTLGIFGYGKIGQLVAGYG-RAFGMNVLVWGRENSKERAR--A-------------DGFAVAESKDALFEQSDV  218 (352)
T ss_dssp             BCCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSHHHHHHHH--H-------------TTCEECSSHHHHHHHCSE
T ss_pred             CccCCCCEEEEEeECHHHHHHHHHH-HhCCCEEEEECCCCCHHHHH--h-------------cCceEeCCHHHHHhhCCE
Confidence            7899999999999999999999997 99999999999986432111  0             112344699999999999


Q ss_pred             EEEeC
Q 026023          240 VCTLC  244 (244)
Q Consensus       240 Vvl~~  244 (244)
                      |++||
T Consensus       219 V~l~~  223 (352)
T 3gg9_A          219 LSVHL  223 (352)
T ss_dssp             EEECC
T ss_pred             EEEec
Confidence            99996

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=100.00  E-value=3.5e-37  Score=272.31  Aligned_cols=212  Identities=31%  Similarity=0.471  Sum_probs=175.3

Q ss_pred             CCCCeEEEEeCCCCchHHHHHHHhC-CCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHh-hccCCcE
Q 026023           12 PNGKYRVVSTKPMPGTRWINLLIEQ-DCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAAL-SRAGGKA   89 (244)
Q Consensus        12 ~~~~~~ilv~~~~~~~~~~~~l~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~-p~l~~k~   89 (244)
                      |+.+|+|+++.++++. +.+.|++. ++++..+. .....+++++.+.+.+ +|+++++...++++++++.+ |+|  ||
T Consensus         5 ~~~~~~il~~~~~~~~-~~~~l~~~~~~~v~~~~-~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~l~~~~~~L--k~   79 (330)
T 2gcg_A            5 PVRLMKVFVTRRIPAE-GRVALARAADCEVEQWD-SDEPIPAKELERGVAG-AHGLLCLLSDHVDKRILDAAGANL--KV   79 (330)
T ss_dssp             --CCEEEEESSCCCHH-HHHHHHHCTTEEEEECC-SSSCCCHHHHHHHHTT-CSEEEECTTSCBCHHHHHHHCTTC--CE
T ss_pred             CCCCCEEEEECCCCHH-HHHHHHhcCCceEEEec-CCCCCCHHHHHHHhcC-CeEEEECCCCCCCHHHHHhcCCCc--eE
Confidence            5567899998876654 57778765 36776543 2223578899999985 99999876668999999999 988  99


Q ss_pred             EEEcccCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEE
Q 026023           90 FSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVG  169 (244)
Q Consensus        90 I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvg  169 (244)
                      |++.|+|+||+|++++.++||.|+|+|++++.+||||+++++|++.|++..+.+.+++|.|..|.+....+.++.|++||
T Consensus        80 I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAe~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~~vg  159 (330)
T 2gcg_A           80 ISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVG  159 (330)
T ss_dssp             EEESSSCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCTTSSCBCCCTTCEEE
T ss_pred             EEECCcccccccHHHHHhCCceEEeCCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccCcCCCCCEEE
Confidence            99999999999999999999999999999999999999999999999999999999999997665443456899999999


Q ss_pred             EEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       170 IvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      |+|+|+||+.+|+++ ++||++|++|||+.... +. ...            .+... .++++++++||+|++|+
T Consensus       160 IIG~G~iG~~iA~~l-~~~G~~V~~~d~~~~~~-~~-~~~------------~g~~~-~~l~e~l~~aDvVi~~v  218 (330)
T 2gcg_A          160 IIGLGRIGQAIARRL-KPFGVQRFLYTGRQPRP-EE-AAE------------FQAEF-VSTPELAAQSDFIVVAC  218 (330)
T ss_dssp             EECCSHHHHHHHHHH-GGGTCCEEEEESSSCCH-HH-HHT------------TTCEE-CCHHHHHHHCSEEEECC
T ss_pred             EECcCHHHHHHHHHH-HHCCCEEEEECCCCcch-hH-HHh------------cCcee-CCHHHHHhhCCEEEEeC
Confidence            999999999999998 89999999999986431 11 111            11222 38999999999999986

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=100.00  E-value=3.4e-38  Score=280.16  Aligned_cols=195  Identities=21%  Similarity=0.219  Sum_probs=163.7

Q ss_pred             HHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEecc--CccccHHHHHHhhccCCcEEEEcccCCCccChHHHh
Q 026023           29 WINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAAN  106 (244)
Q Consensus        29 ~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~--~~~~~~~~l~~~p~l~~k~I~~~~aG~d~id~~~~~  106 (244)
                      ..+.|++.++++.+.....  .+.+++.+.+++ +|++++..  +.++++++++++|+|  |+|++.|+|+||||++++.
T Consensus        32 ~~~~L~~~g~ev~~~~~~~--~~~~~~~~~~~~-ad~li~~~~~~~~~~~~~l~~~p~L--k~i~~~g~G~d~id~~~a~  106 (351)
T 3jtm_A           32 IRDWLESQGHQYIVTDDKE--GPDCELEKHIPD-LHVLISTPFHPAYVTAERIKKAKNL--KLLLTAGIGSDHIDLQAAA  106 (351)
T ss_dssp             CHHHHHHTTCEEEEESCCS--STTSHHHHHTTT-CSEEEECTTSCCCBCHHHHHHCSSC--CEEEESSSCCTTBCHHHHH
T ss_pred             HHHHHHHCCCEEEEeCCCC--CCHHHHHHHhCC-CEEEEEccCCCCCCCHHHHhhCCCC--eEEEEeCeeecccCHHHHH
Confidence            4677888889998765433  356789999985 99999864  246899999999999  9999999999999999999


Q ss_pred             hCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHhc
Q 026023          107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE  186 (244)
Q Consensus       107 ~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~IG~~vA~~la~  186 (244)
                      ++||.|+|+|++|+.+||||+++++|++.|++..+++.+++|.|... .....+.+|.|+||||+|+|+||+.+|++| +
T Consensus       107 ~~gI~V~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~-~~~~~~~~l~gktvGIIG~G~IG~~vA~~l-~  184 (351)
T 3jtm_A          107 AAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVA-GIAYRAYDLEGKTIGTVGAGRIGKLLLQRL-K  184 (351)
T ss_dssp             HTTCEEEECTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCHH-HHHTTCCCSTTCEEEEECCSHHHHHHHHHH-G
T ss_pred             hcCeeEEECCCcCchHHHHHHHHHHHHHhhCcHHHHHHHHcCCCccc-cccCCcccccCCEEeEEEeCHHHHHHHHHH-H
Confidence            99999999999999999999999999999999999999999998631 111235789999999999999999999997 9


Q ss_pred             cCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          187 GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       187 afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +|||+|++|||++.+...  ...            .++...+++++++++||+|++||
T Consensus       185 ~~G~~V~~~dr~~~~~~~--~~~------------~g~~~~~~l~ell~~aDvV~l~~  228 (351)
T 3jtm_A          185 PFGCNLLYHDRLQMAPEL--EKE------------TGAKFVEDLNEMLPKCDVIVINM  228 (351)
T ss_dssp             GGCCEEEEECSSCCCHHH--HHH------------HCCEECSCHHHHGGGCSEEEECS
T ss_pred             HCCCEEEEeCCCccCHHH--HHh------------CCCeEcCCHHHHHhcCCEEEECC
Confidence            999999999998643211  111            11234468999999999999996

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=100.00  E-value=1.3e-38  Score=280.22  Aligned_cols=197  Identities=15%  Similarity=0.163  Sum_probs=161.9

Q ss_pred             CeEEEEeCCCCchHHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHH-HHhhccCCcEEEEc
Q 026023           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLF-AALSRAGGKAFSNM   93 (244)
Q Consensus        15 ~~~ilv~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l-~~~p~l~~k~I~~~   93 (244)
                      |||||++.+++++ +.+.|++.+.++++....+  ...++    +. ++|+++++.. ++ ++++ +.+|+|  |||++.
T Consensus         1 m~kil~~~~~~~~-~~~~L~~~~~~~~~~~~~~--~~~~~----~~-~ad~l~~~~~-~~-~~~l~~~~~~L--k~I~~~   68 (324)
T 3evt_A            1 MSLVLMAQATKPE-QLQQLQTTYPDWTFKDAAA--VTAAD----YD-QIEVMYGNHP-LL-KTILARPTNQL--KFVQVI   68 (324)
T ss_dssp             -CEEEECSCCCHH-HHHHHHHHCTTCEEEETTS--CCTTT----GG-GEEEEESCCT-HH-HHHHHSTTCCC--CEEECS
T ss_pred             CcEEEEecCCCHH-HHHHHHhhCCCeEEecCCc--cChHH----hC-CcEEEEECCc-Ch-HHHHHhhCCCc--eEEEEC
Confidence            4789999998875 6888888765544333221  23333    34 5999998754 46 8888 689999  999999


Q ss_pred             ccCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHH-HHHHHcCCCCCCCCCcccccccCCCEEEEEc
Q 026023           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEA-DEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG  172 (244)
Q Consensus        94 ~aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~-~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG  172 (244)
                      |+|+||+|++++.++||.|+|+||+++.+||||+++++|++.|++..+ .+.+++|.|....    .+.++.|+||||+|
T Consensus        69 ~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~~W~~~~----~~~~l~gktvGIiG  144 (324)
T 3evt_A           69 SAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGARQWALPM----TTSTLTGQQLLIYG  144 (324)
T ss_dssp             SSCCTTSCHHHHHHTTCEEECCTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCSSCSS----CCCCSTTCEEEEEC
T ss_pred             CccccccCHHHHHHCCcEEEECCCcCchHHHHHHHHHHHHHHhChhHHHHHHHhcCCcccCC----CCccccCCeEEEEC
Confidence            999999999999999999999999999999999999999999999999 9999999987532    46789999999999


Q ss_pred             CChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       173 ~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +|+||+.+|++| ++|||+|++|||++++. +. +              ......+++++++++||+|++||
T Consensus       145 lG~IG~~vA~~l-~~~G~~V~~~dr~~~~~-~~-~--------------~~~~~~~~l~ell~~aDvV~l~l  199 (324)
T 3evt_A          145 TGQIGQSLAAKA-SALGMHVIGVNTTGHPA-DH-F--------------HETVAFTATADALATANFIVNAL  199 (324)
T ss_dssp             CSHHHHHHHHHH-HHTTCEEEEEESSCCCC-TT-C--------------SEEEEGGGCHHHHHHCSEEEECC
T ss_pred             cCHHHHHHHHHH-HhCCCEEEEECCCcchh-Hh-H--------------hhccccCCHHHHHhhCCEEEEcC
Confidence            999999999997 99999999999987542 11 0              01123468999999999999996

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=100.00  E-value=5.4e-37  Score=271.27  Aligned_cols=203  Identities=27%  Similarity=0.399  Sum_probs=164.5

Q ss_pred             eEEEEeCCCC-chHHHHHHHhC--CCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEE
Q 026023           16 YRVVSTKPMP-GTRWINLLIEQ--DCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN   92 (244)
Q Consensus        16 ~~ilv~~~~~-~~~~~~~l~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~   92 (244)
                      |||++....+ ...+.+.+++.  ++++.+....    ..+++.+.+. ++|+++++...++++++++++|+.++|||++
T Consensus         2 mkil~~~~~~~~~~~~~~l~~~~p~~~v~~~~~~----~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~   76 (333)
T 1j4a_A            2 TKIFAYAIREDEKPFLKEWEDAHKDVEVEYTDKL----LTPETVALAK-GADGVVVYQQLDYIAETLQALADNGITKMSL   76 (333)
T ss_dssp             CEEEECSCCGGGHHHHHHHHHTCTTSEEEECSSC----CCTTTGGGGT-TCSEEEECCSSCBCHHHHHHHHHTTCCEEEE
T ss_pred             cEEEEEecCccCHHHHHHHHhhCCCcEEEECCCC----CcHHHHHHhc-CCcEEEEcCCCCCCHHHHHhccccCCeEEEE
Confidence            5777764322 23356667653  4577554321    2246666777 4999999866789999999999822299999


Q ss_pred             cccCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEc
Q 026023           93 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG  172 (244)
Q Consensus        93 ~~aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG  172 (244)
                      .|+|+||||++++.++||.|+|+|++++.+||||+++++|++.|++..+.+.+++|.|. |..  ..+.++.|+||||+|
T Consensus        77 ~~~G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~-~~~--~~~~~l~g~~vgIiG  153 (333)
T 1j4a_A           77 RNVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLR-WAP--TIGREVRDQVVGVVG  153 (333)
T ss_dssp             SSSCCTTBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTBCC-CTT--CCBCCGGGSEEEEEC
T ss_pred             CCcccccccHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCc-cCC--cccccCCCCEEEEEc
Confidence            99999999999999999999999999999999999999999999999999999999996 543  346789999999999


Q ss_pred             CChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       173 ~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +|+||+.+|+++ ++|||+|++|||++.+..++.                 ....+++++++++||+|++|+
T Consensus       154 ~G~IG~~~A~~l-~~~G~~V~~~d~~~~~~~~~~-----------------~~~~~~l~ell~~aDvV~l~~  207 (333)
T 1j4a_A          154 TGHIGQVFMQIM-EGFGAKVITYDIFRNPELEKK-----------------GYYVDSLDDLYKQADVISLHV  207 (333)
T ss_dssp             CSHHHHHHHHHH-HHTTCEEEEECSSCCHHHHHT-----------------TCBCSCHHHHHHHCSEEEECS
T ss_pred             cCHHHHHHHHHH-HHCCCEEEEECCCcchhHHhh-----------------CeecCCHHHHHhhCCEEEEcC
Confidence            999999999997 999999999999886532110                 112248999999999999996

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=100.00  E-value=8.6e-37  Score=269.69  Aligned_cols=202  Identities=27%  Similarity=0.395  Sum_probs=167.3

Q ss_pred             CCCeEEEEeCCCCchHHHHHHHhCCCeEEEeccCCCCCCHHH-HHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEE
Q 026023           13 NGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVED-IIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFS   91 (244)
Q Consensus        13 ~~~~~ilv~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~   91 (244)
                      |++++|+++.++.+. ..+.|++. +++......   .+.++ +.+.+. ++|++++....++++++++++|+|  |+|+
T Consensus        21 m~~~~vl~~~~~~~~-~~~~l~~~-~~~~~~~~~---~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~p~L--k~I~   92 (333)
T 3ba1_A           21 MEAIGVLMMCPMSTY-LEQELDKR-FKLFRYWTQ---PAQRDFLALQAE-SIRAVVGNSNAGADAELIDALPKL--EIVS   92 (333)
T ss_dssp             -CCCEEEECSCCCHH-HHHHHHHH-SEEEEGGGC---SSHHHHHHHHTT-TEEEEEECSSSCBCHHHHHHCTTC--CEEE
T ss_pred             CCCCEEEEeCCCCHH-HHHHHHhc-CCEEEecCC---CChHHHHHHHhC-CCEEEEEcCCCCCCHHHHhhCCCC--cEEE
Confidence            445789998887654 56777664 566543321   24455 555566 599999876678999999999999  9999


Q ss_pred             EcccCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEE
Q 026023           92 NMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI  171 (244)
Q Consensus        92 ~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIv  171 (244)
                      +.|+|+||||+++++++||.|+|+|++++.+||||+++++|++.|++..+.+.+++|.|.. . ....+.++.|++||||
T Consensus        93 ~~~~G~d~id~~~~~~~gI~v~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~-~-~~~~~~~l~g~~vgII  170 (333)
T 3ba1_A           93 SFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWKF-G-DFKLTTKFSGKRVGII  170 (333)
T ss_dssp             ESSSCCTTBCHHHHHHHTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTGGGG-C-CCCCCCCCTTCCEEEE
T ss_pred             EcCccccccCHHHHHhCCcEEEECCCcchHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCc-c-ccccccccCCCEEEEE
Confidence            9999999999999999999999999999999999999999999999999999999999962 1 1124678999999999


Q ss_pred             cCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       172 G~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      |+|+||+.+|+++ ++|||+|++|||++... +                  +.....++++++++||+|++|+
T Consensus       171 G~G~iG~~vA~~l-~~~G~~V~~~dr~~~~~-~------------------g~~~~~~l~ell~~aDvVil~v  223 (333)
T 3ba1_A          171 GLGRIGLAVAERA-EAFDCPISYFSRSKKPN-T------------------NYTYYGSVVELASNSDILVVAC  223 (333)
T ss_dssp             CCSHHHHHHHHHH-HTTTCCEEEECSSCCTT-C------------------CSEEESCHHHHHHTCSEEEECS
T ss_pred             CCCHHHHHHHHHH-HHCCCEEEEECCCchhc-c------------------CceecCCHHHHHhcCCEEEEec
Confidence            9999999999997 89999999999987541 0                  1223468999999999999986

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=100.00  E-value=1e-36  Score=269.23  Aligned_cols=204  Identities=18%  Similarity=0.226  Sum_probs=165.0

Q ss_pred             eEEEEeCCC-CchHHHHHHHh-CCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEc
Q 026023           16 YRVVSTKPM-PGTRWINLLIE-QDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (244)
Q Consensus        16 ~~ilv~~~~-~~~~~~~~l~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~   93 (244)
                      |||++.... ....+++.+.+ .++++.+...   ..+++++.+.+.+ +|+++++...++++++++++|+.++|+|++.
T Consensus         1 mki~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~-~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~   76 (331)
T 1xdw_A            1 MKVLCYGVRDVELPIFEACNKEFGYDIKCVPD---YLNTKETAEMAAG-FDAVILRGNCFANKQNLDIYKKLGVKYILTR   76 (331)
T ss_dssp             CEEEECSCCTTTHHHHHHHGGGTCCEEEECSC---CSCSHHHHHTTTT-CSEEEECTTCCBCHHHHHHHHHHTCCEEEES
T ss_pred             CEEEEEecCccCHHHHHHHHHhcCeEEEECCC---CCCHHHHHHHhcC-CeEEEEeCCCCCCHHHHhhCcccCceEEEEc
Confidence            467775422 22335666644 3556654322   2355778888874 9999998667899999999998223999999


Q ss_pred             ccCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcC
Q 026023           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (244)
Q Consensus        94 ~aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~  173 (244)
                      |+|+||||++++.++||.|+|+|++++.+||||+++++|++.|+++.+.+.+++|.|. |... ..+.++.|+||||+|+
T Consensus        77 ~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~-~~~~-~~~~~l~g~~vgIiG~  154 (331)
T 1xdw_A           77 TAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFK-VDAF-MFSKEVRNCTVGVVGL  154 (331)
T ss_dssp             SSCCTTBCHHHHHHTTCCEECCCCCCHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCC-CCST-TCCCCGGGSEEEEECC
T ss_pred             cccccccCHHHHHhCCcEEEeCCCCCcHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCc-cccC-cCccCCCCCEEEEECc
Confidence            9999999999999999999999999999999999999999999999999999999996 5221 3467899999999999


Q ss_pred             ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       174 G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      |+||+.+|+++ ++|||+|++|||++.+..+                ..  ....++++++++||+|++||
T Consensus       155 G~IG~~~A~~l-~~~G~~V~~~d~~~~~~~~----------------~~--~~~~~l~ell~~aDvV~~~~  206 (331)
T 1xdw_A          155 GRIGRVAAQIF-HGMGATVIGEDVFEIKGIE----------------DY--CTQVSLDEVLEKSDIITIHA  206 (331)
T ss_dssp             SHHHHHHHHHH-HHTTCEEEEECSSCCCSCT----------------TT--CEECCHHHHHHHCSEEEECC
T ss_pred             CHHHHHHHHHH-HHCCCEEEEECCCccHHHH----------------hc--cccCCHHHHHhhCCEEEEec
Confidence            99999999997 9999999999998754210                01  12358999999999999996

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=3.6e-37  Score=272.36  Aligned_cols=202  Identities=24%  Similarity=0.387  Sum_probs=162.5

Q ss_pred             eEEEEeCCC-CchHHHHHHHh-CCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEc
Q 026023           16 YRVVSTKPM-PGTRWINLLIE-QDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (244)
Q Consensus        16 ~~ilv~~~~-~~~~~~~~l~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~   93 (244)
                      |||++.... ....+++.+.+ .++++.+....    ..+++.+.+. ++|+++++...++++++++++|+.++|+|++.
T Consensus         1 Mkil~~~~~~~~~~~~~~l~~~~~~~v~~~~~~----~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~   75 (333)
T 1dxy_A            1 MKIIAYGARVDEIQYFKQWAKDTGNTLEYHTEF----LDENTVEWAK-GFDGINSLQTTPYAAGVFEKMHAYGIKFLTIR   75 (333)
T ss_dssp             CEEEECSCCTTTHHHHHHHHHHHCCEEEECSSC----CCTTGGGGGT-TCSEEEECCSSCBCHHHHHHHHHTTCCEEEES
T ss_pred             CEEEEEeccccCHHHHHHHHHhCCeEEEEcCCC----ChHHHHHHhc-CCeEEEEcCCCCCCHHHHHhCcccCceEEEEc
Confidence            467765321 22335666643 35666554322    2346666677 49999998667899999999998222999999


Q ss_pred             ccCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCC-CCCcccccccCCCEEEEEc
Q 026023           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW-LPNLFVGNLLKGQTVGVIG  172 (244)
Q Consensus        94 ~aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~-~~~~~~~~~l~g~tvgIvG  172 (244)
                      |+|+||||++++.++||.|+|+|++++.+||||+++++|++.|+++.+.+.+++|.|. | ..  ..+.++.|+||||+|
T Consensus        76 ~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~-~~~~--~~~~~l~g~~vgIiG  152 (333)
T 1dxy_A           76 NVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYE-KAGT--FIGKELGQQTVGVMG  152 (333)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHH-HHTC--CCCCCGGGSEEEEEC
T ss_pred             CcccCccCHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHhhhHHHHHHHHHcCCcc-cccC--CCccCCCCCEEEEEC
Confidence            9999999999999999999999999999999999999999999999999999999985 4 22  246789999999999


Q ss_pred             CChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       173 ~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +|+||+.+|+++ ++|||+|++|||++.+..+                ..  ....++++++++||+|++||
T Consensus       153 ~G~IG~~~A~~l-~~~G~~V~~~d~~~~~~~~----------------~~--~~~~~l~ell~~aDvV~~~~  205 (333)
T 1dxy_A          153 TGHIGQVAIKLF-KGFGAKVIAYDPYPMKGDH----------------PD--FDYVSLEDLFKQSDVIDLHV  205 (333)
T ss_dssp             CSHHHHHHHHHH-HHTTCEEEEECSSCCSSCC----------------TT--CEECCHHHHHHHCSEEEECC
T ss_pred             cCHHHHHHHHHH-HHCCCEEEEECCCcchhhH----------------hc--cccCCHHHHHhcCCEEEEcC
Confidence            999999999997 9999999999998754210                01  12358999999999999996

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=100.00  E-value=3.4e-36  Score=266.36  Aligned_cols=206  Identities=34%  Similarity=0.610  Sum_probs=171.6

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEccc
Q 026023           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (244)
Q Consensus        16 ~~ilv~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~a   95 (244)
                      ++|+++.++++. ..+.|++. +++.+... ....+++++.+.+.+ +|+++++...++++++++.+|+|  |||++.|+
T Consensus         3 ~~il~~~~~~~~-~~~~l~~~-~~~~~~~~-~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~l~~~~~L--k~I~~~~~   76 (334)
T 2dbq_A            3 PKVFITREIPEV-GIKMLEDE-FEVEVWGD-EKEIPREILLKKVKE-VDALVTMLSERIDKEVFENAPKL--RIVANYAV   76 (334)
T ss_dssp             CEEEESSCCCHH-HHHHHHTT-SEEEECCC-SSCCCHHHHHHHTTS-CSEEEECTTSCBCHHHHHTCTTC--CEEEESSS
T ss_pred             cEEEEecCCCHH-HHHHHHhc-CCEEEecC-CCCCCHHHHHHHhcC-cEEEEEcCCCCCCHHHHhhCCCc--eEEEECCc
Confidence            578887766654 56777664 57765432 223578899888884 99999886668999999999999  99999999


Q ss_pred             CCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCC----CCCCCcccccccCCCEEEEE
Q 026023           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTVGVI  171 (244)
Q Consensus        96 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~----~~~~~~~~~~~l~g~tvgIv  171 (244)
                      |+||+|++++.++||.|+|+||+++.+||||+++++|++.|++..+.+.+++|.|.    +|.+....+.++.|++|||+
T Consensus        77 G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~g~~vgII  156 (334)
T 2dbq_A           77 GYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGII  156 (334)
T ss_dssp             CCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTSHHHHTTCCCCTTTTCCCCCTTCEEEEE
T ss_pred             ccccccHHHHHhCCCEEEeCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccccccccccccccCCCCCEEEEE
Confidence            99999999999999999999999999999999999999999999999999999996    45433334678999999999


Q ss_pred             cCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       172 G~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      |+|+||+.+|++| ++||++|++|||++..+..   ..+            +. ...++++++++||+|++|+
T Consensus       157 G~G~iG~~iA~~l-~~~G~~V~~~d~~~~~~~~---~~~------------g~-~~~~l~~~l~~aDvVil~v  212 (334)
T 2dbq_A          157 GLGRIGQAIAKRA-KGFNMRILYYSRTRKEEVE---REL------------NA-EFKPLEDLLRESDFVVLAV  212 (334)
T ss_dssp             CCSHHHHHHHHHH-HHTTCEEEEECSSCCHHHH---HHH------------CC-EECCHHHHHHHCSEEEECC
T ss_pred             ccCHHHHHHHHHH-HhCCCEEEEECCCcchhhH---hhc------------Cc-ccCCHHHHHhhCCEEEECC
Confidence            9999999999998 8999999999998765211   111            11 2358999999999999986

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=100.00  E-value=4e-37  Score=274.94  Aligned_cols=210  Identities=20%  Similarity=0.199  Sum_probs=169.4

Q ss_pred             CCCeEEEEeCCCCchHHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEecc--CccccHHHHHHhhccCCcEE
Q 026023           13 NGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAF   90 (244)
Q Consensus        13 ~~~~~ilv~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~--~~~~~~~~l~~~p~l~~k~I   90 (244)
                      ..+++|++....... ..+.+++.++++.+.....  .+.+++.+.+.+ +|++++..  ..++++++++.+|+|  |+|
T Consensus        15 ~~~~~vl~~d~~~~~-~~~~l~~~~~~v~~~~~~~--~~~~~~~~~~~~-~d~~i~~~~~~~~~~~~~l~~~~~L--k~I   88 (364)
T 2j6i_A           15 ADEEKLYGCTENKLG-IANWLKDQGHELITTSDKE--GGNSVLDQHIPD-ADIIITTPFHPAYITKERIDKAKKL--KLV   88 (364)
T ss_dssp             HHCTTCTTBTTTGGG-CHHHHHHTTCEEEEESCCS--STTSHHHHHGGG-CSEEEECTTSCCCBCHHHHHHCTTC--CEE
T ss_pred             ccCceEEEecCccHH-HHHHHHhCCCEEEEcCCCC--CCHHHHHHHhhC-CeEEEecCcCCCCCCHHHHhhCCCC--eEE
Confidence            356777777665543 4567777778887654322  246788888885 99998753  235899999999999  999


Q ss_pred             EEcccCCCccChHHHhhC--CcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEE
Q 026023           91 SNMAVGYNNVDVNAANKY--GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTV  168 (244)
Q Consensus        91 ~~~~aG~d~id~~~~~~~--gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tv  168 (244)
                      ++.++|+||||++++.++  ||.|+|+|++++.+||||+++++|++.|++..+.+.+++|.|.. ......+.+|.|+||
T Consensus        89 ~~~~~G~d~id~~~~~~~~~gI~V~n~pg~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~-~~~~~~~~~l~g~tv  167 (364)
T 2j6i_A           89 VVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEV-AAIAKDAYDIEGKTI  167 (364)
T ss_dssp             EESSSCCTTBCHHHHHHHTCCCEEEECTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCH-HHHHTTCCCSTTCEE
T ss_pred             EECCcccccccHHHHHhcCCCEEEEECCCcCcHHHHHHHHHHHHHHHhChHHHHHHHHhCCCCc-CcccCCcccCCCCEE
Confidence            999999999999999999  99999999999999999999999999999999999999999852 111123578999999


Q ss_pred             EEEcCChHHHHHHHHHhccCCcE-EEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          169 GVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       169 gIvG~G~IG~~vA~~la~afG~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      ||+|+|+||+.+|++| ++|||+ |++|||++.+...  ...+            +.....++++++++||+|++||
T Consensus       168 gIIG~G~IG~~vA~~l-~~~G~~~V~~~d~~~~~~~~--~~~~------------g~~~~~~l~ell~~aDvV~l~~  229 (364)
T 2j6i_A          168 ATIGAGRIGYRVLERL-VPFNPKELLYYDYQALPKDA--EEKV------------GARRVENIEELVAQADIVTVNA  229 (364)
T ss_dssp             EEECCSHHHHHHHHHH-GGGCCSEEEEECSSCCCHHH--HHHT------------TEEECSSHHHHHHTCSEEEECC
T ss_pred             EEECcCHHHHHHHHHH-HhCCCcEEEEECCCccchhH--HHhc------------CcEecCCHHHHHhcCCEEEECC
Confidence            9999999999999997 999997 9999998743211  1111            1223458999999999999996

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=100.00  E-value=2.1e-36  Score=271.91  Aligned_cols=193  Identities=20%  Similarity=0.201  Sum_probs=158.4

Q ss_pred             HHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEecc--CccccHHHHHHhhccCCcEEEEcccCCCccChHHHhhC
Q 026023           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKY  108 (244)
Q Consensus        31 ~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~--~~~~~~~~l~~~p~l~~k~I~~~~aG~d~id~~~~~~~  108 (244)
                      +.|++.++++.+....  ..+++++.+.+.+ +|++++..  ..++++++++++|+|  |+|++.++|+||||++++.++
T Consensus        61 ~~l~~~g~~v~~~~~~--~~~~~~l~~~l~~-ad~li~~~~~~~~i~~~~l~~~p~L--k~I~~~g~G~d~iD~~aa~~~  135 (393)
T 2nac_A           61 KYLESNGHTLVVTSDK--DGPDSVFERELVD-ADVVISQPFWPAYLTPERIAKAKNL--KLALTAGIGSDHVDLQSAIDR  135 (393)
T ss_dssp             HHHHHTTCEEEEESCC--SSTTSHHHHHHTT-CSEEEEBTTBCCCBCHHHHHHCTTC--CEEEESSSCCTTBCHHHHHHT
T ss_pred             HHHHhCCCEEEEecCC--CCCHHHHHHhccC-CCEEEEcCccCCCCCHHHHhhCCCC--cEEEEcCccccccCHHHHhcC
Confidence            5677777787654332  2245678888885 99998753  347899999999999  999999999999999999999


Q ss_pred             CcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHhccC
Q 026023          109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF  188 (244)
Q Consensus       109 gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~IG~~vA~~la~af  188 (244)
                      ||.|+|++++++.+||||+++++|++.|++..+++.+++|.|... .....+.+|.|+||||||+|+||+.+|+++ ++|
T Consensus       136 gI~V~n~~g~~~~~VAE~al~liL~~~R~~~~~~~~~~~g~W~~~-~~~~~~~~l~gktvGIIGlG~IG~~vA~~l-~a~  213 (393)
T 2nac_A          136 NVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIA-DCVSHAYDLEAMHVGTVAAGRIGLAVLRRL-APF  213 (393)
T ss_dssp             TCEEEECTTTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHH-HHHTTCCCCTTCEEEEECCSHHHHHHHHHH-GGG
T ss_pred             CEEEEeCCCcccHHHHHHHHHHHHHHHhccHHHHHHHHcCCCCcc-ccccCCccCCCCEEEEEeECHHHHHHHHHH-HhC
Confidence            999999999999999999999999999999999999999998521 111235789999999999999999999997 999


Q ss_pred             CcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          189 KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       189 G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      ||+|++|||++.....  ...+            +.....++++++++||+|++||
T Consensus       214 G~~V~~~d~~~~~~~~--~~~~------------G~~~~~~l~ell~~aDvV~l~~  255 (393)
T 2nac_A          214 DVHLHYTDRHRLPESV--EKEL------------NLTWHATREDMYPVCDVVTLNC  255 (393)
T ss_dssp             TCEEEEECSSCCCHHH--HHHH------------TCEECSSHHHHGGGCSEEEECS
T ss_pred             CCEEEEEcCCccchhh--Hhhc------------CceecCCHHHHHhcCCEEEEec
Confidence            9999999998644211  1111            1223358999999999999996

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=100.00  E-value=6e-36  Score=264.60  Aligned_cols=202  Identities=31%  Similarity=0.457  Sum_probs=168.8

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEccc
Q 026023           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (244)
Q Consensus        16 ~~ilv~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~a   95 (244)
                      ++|+++.+++++ ..+.|++. +++++..    ..+.+++.+.+.+ +|++++....++++++++.+|+|  |+|++.|+
T Consensus         3 ~~il~~~~~~~~-~~~~l~~~-~~~~~~~----~~~~~~~~~~~~~-~d~~i~~~~~~~~~~~l~~~~~L--k~I~~~~~   73 (333)
T 2d0i_A            3 PKVGVLLKMKRE-ALEELKKY-ADVEIIL----YPSGEELKGVIGR-FDGIIVSPTTKITREVLENAERL--KVISCHSA   73 (333)
T ss_dssp             SEEEECSCCCHH-HHHHHHTT-SEEEECC----SCCHHHHHHHGGG-CSEEEECTTSCBCHHHHTTCTTC--CEEEESSS
T ss_pred             cEEEEECCCCHH-HHHHHHhc-CCEEEeC----CCCHHHHHHHhcC-CEEEEECCCCCCCHHHHhhCCCc--eEEEECCc
Confidence            578888776654 56777664 5776533    2578899988884 99999766668999999999999  99999999


Q ss_pred             CCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccc----cccCCCEEEEE
Q 026023           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVG----NLLKGQTVGVI  171 (244)
Q Consensus        96 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~----~~l~g~tvgIv  171 (244)
                      |+||+|++++.++||.|+|+|++++.+||||+++++|++.|++..+.+.+++|.|..|.. ...+    .++.|++|||+
T Consensus        74 G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~-~~~~~~~~~~l~g~~vgII  152 (333)
T 2d0i_A           74 GYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHAK-IWTGFKRIESLYGKKVGIL  152 (333)
T ss_dssp             CCTTBCHHHHHHTTCEEECCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCHHH-HHTTSCCCCCSTTCEEEEE
T ss_pred             ccccccHHHHHhCCcEEEeCCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCcCcc-cccCCcccCCCCcCEEEEE
Confidence            999999999999999999999999999999999999999999999999999999964321 1124    68999999999


Q ss_pred             cCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       172 G~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      |+|+||+.+|+++ ++|||+|++|||++..+...   .+            +. ...++++++++||+|++|+
T Consensus       153 G~G~iG~~vA~~l-~~~G~~V~~~d~~~~~~~~~---~~------------g~-~~~~l~e~l~~aDiVil~v  208 (333)
T 2d0i_A          153 GMGAIGKAIARRL-IPFGVKLYYWSRHRKVNVEK---EL------------KA-RYMDIDELLEKSDIVILAL  208 (333)
T ss_dssp             CCSHHHHHHHHHH-GGGTCEEEEECSSCCHHHHH---HH------------TE-EECCHHHHHHHCSEEEECC
T ss_pred             ccCHHHHHHHHHH-HHCCCEEEEECCCcchhhhh---hc------------Cc-eecCHHHHHhhCCEEEEcC
Confidence            9999999999997 89999999999998652111   11            11 1248999999999999996

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=100.00  E-value=7.5e-36  Score=278.67  Aligned_cols=202  Identities=27%  Similarity=0.364  Sum_probs=170.4

Q ss_pred             CCeEEEEeCCCCchHHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEc
Q 026023           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (244)
Q Consensus        14 ~~~~ilv~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~   93 (244)
                      .+|+|+++.++++. ..+.|++. +++++..    ..+.+++.+.+.+ +|++++++..++++++++++|+|  |||++.
T Consensus         3 ~~~~vl~~~~~~~~-~~~~l~~~-~~v~~~~----~~~~~~~~~~~~~-~d~li~~~~~~~~~~~l~~~~~L--k~i~~~   73 (529)
T 1ygy_A            3 SLPVVLIADKLAPS-TVAALGDQ-VEVRWVD----GPDRDKLLAAVPE-ADALLVRSATTVDAEVLAAAPKL--KIVARA   73 (529)
T ss_dssp             CCCEEEECSSCCGG-GGTTSCSS-SEEEECC----TTSHHHHHHHGGG-CSEEEECSSSCBCHHHHHTCTTC--CEEEES
T ss_pred             CCcEEEEeCCCCHH-HHHHHhcC-ceEEEcC----CCCHHHHHHHhcC-CEEEEEcCCCCCCHHHHhhCCCC--cEEEEC
Confidence            35789998887654 45666554 6776543    2478899999985 99999877778999999999999  999999


Q ss_pred             ccCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcC
Q 026023           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (244)
Q Consensus        94 ~aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~  173 (244)
                      |+|+||+|++++.++||.|+|+|++|+.+||||+++++|++.|+++.+++.+++|.|.+.   .+.+.++.|+|+||+|+
T Consensus        74 ~~G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~g~w~~~---~~~~~~l~g~~vgIIG~  150 (529)
T 1ygy_A           74 GVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRS---SFSGTEIFGKTVGVVGL  150 (529)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGG---GCCBCCCTTCEEEEECC
T ss_pred             CcCcCccCHhHHHhCCeEEEECCCcchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCccc---CcCccccCCCEEEEEee
Confidence            999999999999999999999999999999999999999999999999999999998631   23467899999999999


Q ss_pred             ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       174 G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      |+||+.+|++| ++|||+|++|||+...+...   ..            ++.. .++++++++||+|++|+
T Consensus       151 G~IG~~vA~~l-~~~G~~V~~~d~~~~~~~a~---~~------------g~~~-~~l~e~~~~aDvV~l~~  204 (529)
T 1ygy_A          151 GRIGQLVAQRI-AAFGAYVVAYDPYVSPARAA---QL------------GIEL-LSLDDLLARADFISVHL  204 (529)
T ss_dssp             SHHHHHHHHHH-HTTTCEEEEECTTSCHHHHH---HH------------TCEE-CCHHHHHHHCSEEEECC
T ss_pred             CHHHHHHHHHH-HhCCCEEEEECCCCChhHHH---hc------------CcEE-cCHHHHHhcCCEEEECC
Confidence            99999999998 99999999999987432111   11            1222 38999999999999996

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=100.00  E-value=2.2e-36  Score=269.39  Aligned_cols=188  Identities=22%  Similarity=0.344  Sum_probs=153.0

Q ss_pred             HHHHHHhCCCeEEEeccCCCCCCHHHHHHH-hcCCccEEEeccCccccHHHHHHhhccCCcEEEEc-ccCCCccChHHHh
Q 026023           29 WINLLIEQDCRVEICTQKKTILSVEDIIAL-IGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM-AVGYNNVDVNAAN  106 (244)
Q Consensus        29 ~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~-~aG~d~id~~~~~  106 (244)
                      ..+.|++. +++....    ..+.+++.+. +. ++++++..  .++++++++++|+|  |+|++. |+|+||||+++++
T Consensus        48 ~~~~L~~~-~~v~~~~----~~~~~e~~~~~~~-~~~~i~~~--~~i~~~~l~~~p~L--k~I~~~~~~G~d~iD~~~a~  117 (365)
T 4hy3_A           48 ARAALHSK-YEIVEAD----PENIAGLGDDILG-RARYIIGQ--PPLSAETLARMPAL--RSILNVESNLLNNMPYEVLF  117 (365)
T ss_dssp             HHHHHHHH-SEEEECC----GGGGGGSCTTHHH-HEEEEEEC--CCCCHHHHTTCTTC--CEEECCSSSCCSCSCTTHHH
T ss_pred             HHHHHhCC-cEEEECC----CCChHHHHHHhhC-CeEEEEeC--CCCCHHHHhhCCCC--eEEEEecccccCcccHHHHh
Confidence            46777765 5776322    1244554443 34 47887754  57999999999999  999975 8999999999999


Q ss_pred             hCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCC-cccccccCCCEEEEEcCChHHHHHHHHHh
Q 026023          107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPN-LFVGNLLKGQTVGVIGAGRIGSAYARMMV  185 (244)
Q Consensus       107 ~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~-~~~~~~l~g~tvgIvG~G~IG~~vA~~la  185 (244)
                      ++||.|+|+|++++.+||||+++++|++.|++..+.+.+++|.|. |... ...+.++.|+||||||+|+||+.+|+++ 
T Consensus       118 ~~GI~V~n~~~~~~~~vAE~~l~l~L~~~R~~~~~~~~~r~g~~~-w~~~~~~~~~~l~gktvGIIGlG~IG~~vA~~l-  195 (365)
T 4hy3_A          118 QRGIHVVTTGQVFAEPVAEIGLGFALALARGIVDADIAFQEGTEL-WGGEGNASARLIAGSEIGIVGFGDLGKALRRVL-  195 (365)
T ss_dssp             HSCCEEEECGGGGHHHHHHHHHHHHHHHHHTTTHHHHHHHHTCCC-CSSSSTTSCCCSSSSEEEEECCSHHHHHHHHHH-
T ss_pred             cCCeEEEeCCCccchHHHHHHHHHHHHHHhchhHHHHHHHcCCcc-ccccccccccccCCCEEEEecCCcccHHHHHhh-
Confidence            999999999999999999999999999999999999999999965 4322 2357899999999999999999999997 


Q ss_pred             ccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          186 EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       186 ~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      ++|||+|++|||+.+.....   .            .++ ...++++++++||+|++||
T Consensus       196 ~~fG~~V~~~d~~~~~~~~~---~------------~g~-~~~~l~ell~~aDvV~l~~  238 (365)
T 4hy3_A          196 SGFRARIRVFDPWLPRSMLE---E------------NGV-EPASLEDVLTKSDFIFVVA  238 (365)
T ss_dssp             TTSCCEEEEECSSSCHHHHH---H------------TTC-EECCHHHHHHSCSEEEECS
T ss_pred             hhCCCEEEEECCCCCHHHHh---h------------cCe-eeCCHHHHHhcCCEEEEcC
Confidence            99999999999986542211   0            111 2468999999999999996

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=100.00  E-value=4e-36  Score=266.71  Aligned_cols=210  Identities=24%  Similarity=0.346  Sum_probs=163.1

Q ss_pred             CCCCeEEEEeCCCCchHHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEE
Q 026023           12 PNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFS   91 (244)
Q Consensus        12 ~~~~~~ilv~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~   91 (244)
                      ++++++|++..........+.++.. .++.....    .+.+++.+.+.+++|+++++...++++++++++|+|  |+|+
T Consensus        18 ~~~kp~i~~l~~~~~~~~~~~l~~~-~~~~~~~~----~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L--k~I~   90 (347)
T 1mx3_A           18 GSHMPLVALLDGRDCTVEMPILKDV-ATVAFCDA----QSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKAL--RIIV   90 (347)
T ss_dssp             ---CCEEEESSCSCCTTTHHHHTTT-CEEEECCC----SSGGGSCHHHHHHEEEEEECSSSCBCHHHHTTCSSC--CEEE
T ss_pred             CCCCCEEEEEcCCcchhhHHHhhcc-ceEEecCC----CCHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhCCCC--CEEE
Confidence            4567888777532211124556553 46654432    355667666422488888877778999999999999  9999


Q ss_pred             EcccCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCC----cccccccCCCE
Q 026023           92 NMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPN----LFVGNLLKGQT  167 (244)
Q Consensus        92 ~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~----~~~~~~l~g~t  167 (244)
                      +.++|+||||++++.++||.|+|+|++++.+||||+++++|++.|++..+.+.+++|.|......    ...+.++.|+|
T Consensus        91 ~~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~l~g~t  170 (347)
T 1mx3_A           91 RIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGET  170 (347)
T ss_dssp             ESSSCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCE
T ss_pred             EcccccCcccHHHHHhCCceEEECCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCcccccccccccccCccCCCCCE
Confidence            99999999999999999999999999999999999999999999999999999999998521100    01126899999


Q ss_pred             EEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       168 vgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      |||||+|+||+.+|++| ++|||+|++|||++.+..+.   .+            +.....++++++++||+|++||
T Consensus       171 vGIIG~G~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~~---~~------------g~~~~~~l~ell~~aDvV~l~~  231 (347)
T 1mx3_A          171 LGIIGLGRVGQAVALRA-KAFGFNVLFYDPYLSDGVER---AL------------GLQRVSTLQDLLFHSDCVTLHC  231 (347)
T ss_dssp             EEEECCSHHHHHHHHHH-HTTTCEEEEECTTSCTTHHH---HH------------TCEECSSHHHHHHHCSEEEECC
T ss_pred             EEEEeECHHHHHHHHHH-HHCCCEEEEECCCcchhhHh---hc------------CCeecCCHHHHHhcCCEEEEcC
Confidence            99999999999999997 99999999999987542221   11            1223458999999999999996

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=100.00  E-value=1.4e-35  Score=263.73  Aligned_cols=208  Identities=22%  Similarity=0.310  Sum_probs=165.2

Q ss_pred             CeEEEEeCC-CC-chHHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhc----CCccEEEec------cCccccHHHHHHh
Q 026023           15 KYRVVSTKP-MP-GTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG----DKCDGVIGQ------LTEDWGETLFAAL   82 (244)
Q Consensus        15 ~~~ilv~~~-~~-~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~----~~ad~ii~~------~~~~~~~~~l~~~   82 (244)
                      +++|+++.+ .. .+...+.|++. +++....    ..+++++.+.++    +++|+++..      ...++++++++++
T Consensus         3 ~~~vl~~~~~~~~~~~~~~~l~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~   77 (348)
T 2w2k_A            3 RPRVLLLGDPARHLDDLWSDFQQK-FEVIPAN----LTTHDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADLISHL   77 (348)
T ss_dssp             CCEEEECSSCCSSCHHHHHHHHHH-SEEEECC----CCCHHHHHHHHHTTTTCCCSEEEECSTTTTGGGCCBCHHHHTTS
T ss_pred             CcEEEEECCccccChHHHHHHHhc-ceEEecC----CCCHHHHHHHhhhcccCCeEEEEEcccccccccCCCCHHHHHhc
Confidence            568888876 43 22345667554 5775432    247899999887    148988763      2457999999999


Q ss_pred             h-ccCCcEEEEcccCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCC---CCCCCC-Cc
Q 026023           83 S-RAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGL---YDGWLP-NL  157 (244)
Q Consensus        83 p-~l~~k~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~---w~~~~~-~~  157 (244)
                      | +|  |+|++.++|+||||++++.++||.|+|+|++++.+||||+++++|++.|+++.+.+.+++|.   |..+.. ..
T Consensus        78 ~~~L--k~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAe~~~~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~~~  155 (348)
T 2w2k_A           78 PSSL--KVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPETFNRVHLEIG  155 (348)
T ss_dssp             CTTC--CEEEESSSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             ccCc--eEEEECCccccccCHHHHHhCCcEEEECCCCCcHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccccc
Confidence            8 48  99999999999999999999999999999999999999999999999999999999999999   832110 01


Q ss_pred             ccccccCCCEEEEEcCChHHHHHHHHHhc-cCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhh
Q 026023          158 FVGNLLKGQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (244)
Q Consensus       158 ~~~~~l~g~tvgIvG~G~IG~~vA~~la~-afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  236 (244)
                      ..+.++.|+||||||+|+||+.+|+++ + +|||+|++|||++......  ..+            +.....++++++++
T Consensus       156 ~~~~~l~g~~vgIIG~G~IG~~vA~~l-~~~~G~~V~~~d~~~~~~~~~--~~~------------g~~~~~~l~ell~~  220 (348)
T 2w2k_A          156 KSAHNPRGHVLGAVGLGAIQKEIARKA-VHGLGMKLVYYDVAPADAETE--KAL------------GAERVDSLEELARR  220 (348)
T ss_dssp             TTCCCSTTCEEEEECCSHHHHHHHHHH-HHTTCCEEEEECSSCCCHHHH--HHH------------TCEECSSHHHHHHH
T ss_pred             ccCcCCCCCEEEEEEECHHHHHHHHHH-HHhcCCEEEEECCCCcchhhH--hhc------------CcEEeCCHHHHhcc
Confidence            235789999999999999999999997 8 9999999999987542111  111            12223489999999


Q ss_pred             CCEEEEeC
Q 026023          237 ADVVCTLC  244 (244)
Q Consensus       237 sD~Vvl~~  244 (244)
                      ||+|++||
T Consensus       221 aDvVil~v  228 (348)
T 2w2k_A          221 SDCVSVSV  228 (348)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEEeC
Confidence            99999996

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=100.00  E-value=1.6e-34  Score=253.22  Aligned_cols=192  Identities=18%  Similarity=0.194  Sum_probs=152.1

Q ss_pred             CeEEEEeCCCC-chHHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEc
Q 026023           15 KYRVVSTKPMP-GTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (244)
Q Consensus        15 ~~~ilv~~~~~-~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~   93 (244)
                      .|||++..+.+ .+.|.+.+++...++++...++     ++    .. ++|+++++.   .++++++. |+|  |||++.
T Consensus         3 ~mkil~~~~~~~~~~~~~~l~~~~p~~~~~~~~~-----~~----~~-~ad~~i~~~---~~~~~l~~-~~L--k~I~~~   66 (315)
T 3pp8_A            3 AMEIIFYHPTFNAAWWVNALEKALPHARVREWKV-----GD----NN-PADYALVWQ---PPVEMLAG-RRL--KAVFVL   66 (315)
T ss_dssp             CEEEEEECSSSCHHHHHHHHHHHSTTEEEEECCT-----TC----CS-CCSEEEESS---CCHHHHTT-CCC--SEEEES
T ss_pred             ceEEEEEcCCCchHHHHHHHHHHCCCCEEEecCC-----CC----cc-CcEEEEECC---CCHHHhCC-CCc--eEEEEC
Confidence            48898887654 3457788876544554432221     11    23 599999984   47899998 988  999999


Q ss_pred             ccCCCcc-C-hHH---HhhCCcEEEecCCCC-CcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCE
Q 026023           94 AVGYNNV-D-VNA---ANKYGIAVGNTPGVL-TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQT  167 (244)
Q Consensus        94 ~aG~d~i-d-~~~---~~~~gI~v~n~~~~~-~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~t  167 (244)
                      |+|+||+ | +++   +.++||.|+|+++.. +.+||||+++++|++.|+++.+.+.+++|.|...     .+.++.|+|
T Consensus        67 ~aG~d~i~d~~~a~~~~~~~gi~v~~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~-----~~~~l~g~t  141 (315)
T 3pp8_A           67 GAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFDDYQALKNQALWKPL-----PEYTREEFS  141 (315)
T ss_dssp             SSCCHHHHHHHHHCTTSSCTTSCEEEC--CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC-----CCCCSTTCC
T ss_pred             CEecccccchhhhhhhhhcCCCEEEEcCCCCccHHHHHHHHHHHHHHHhCChHHHHHHHhcccCCC-----CCCCcCCCE
Confidence            9999999 7 776   678899999999865 7999999999999999999999999999999753     357899999


Q ss_pred             EEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       168 vgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      |||+|+|+||+.+|++| ++|||+|++|+|+++.. +. ++              .....++|++++++||+|++||
T Consensus       142 vGIiG~G~IG~~vA~~l-~~~G~~V~~~dr~~~~~-~~-~~--------------~~~~~~~l~ell~~aDiV~l~~  201 (315)
T 3pp8_A          142 VGIMGAGVLGAKVAESL-QAWGFPLRCWSRSRKSW-PG-VE--------------SYVGREELRAFLNQTRVLINLL  201 (315)
T ss_dssp             EEEECCSHHHHHHHHHH-HTTTCCEEEEESSCCCC-TT-CE--------------EEESHHHHHHHHHTCSEEEECC
T ss_pred             EEEEeeCHHHHHHHHHH-HHCCCEEEEEcCCchhh-hh-hh--------------hhcccCCHHHHHhhCCEEEEec
Confidence            99999999999999997 99999999999987641 10 00              0111258999999999999996

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=2.9e-34  Score=250.62  Aligned_cols=182  Identities=20%  Similarity=0.285  Sum_probs=151.2

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEccc
Q 026023           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (244)
Q Consensus        16 ~~ilv~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~a   95 (244)
                      |+|+++.++++. +.+.|++.++++.    .          +.+. ++|+++++.   .+.+.++++|+|  |||++.|+
T Consensus         1 m~il~~~~~~~~-~~~~l~~~~~~v~----~----------~~~~-~~d~~i~~~---~~~~~l~~~~~L--k~I~~~~~   59 (303)
T 1qp8_A            1 MELYVNFELPPE-AEEELRKYFKIVR----G----------GDLG-NVEAALVSR---ITAEELAKMPRL--KFIQVVTA   59 (303)
T ss_dssp             CEEECCSCCCHH-HHHHHHTTCEEEC----S----------SCCT-TBCCCCBSC---CCHHHHHHCTTC--CCEEBSSS
T ss_pred             CEEEEccCCCHH-HHHHHHhcCCccc----h----------hhhC-CCEEEEECC---CCHHHHhhCCCC--cEEEECCc
Confidence            477887776654 5777877654442    1          1233 599988874   456899999999  99999999


Q ss_pred             CCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh
Q 026023           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR  175 (244)
Q Consensus        96 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~  175 (244)
                      |+||+|++++ ++||.|+|++++++.+||||+++++|++.|+++.+.+.+++|.|....    ...++.|+||||+|+|+
T Consensus        60 G~d~id~~~~-~~gi~v~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~----~~~~l~g~~vgIIG~G~  134 (303)
T 1qp8_A           60 GLDHLPWESI-PPHVTVAGNAGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDV----EIPLIQGEKVAVLGLGE  134 (303)
T ss_dssp             CCTTSCCTTS-CTTSCEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCS----CCCCCTTCEEEEESCST
T ss_pred             CcccccHHHH-hcCCEEEECCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCC----CCCCCCCCEEEEEccCH
Confidence            9999999885 789999999999999999999999999999999999999999996421    23579999999999999


Q ss_pred             HHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       176 IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      ||+.+|++| ++|||+|++|||++.+  +                  +.....++++++++||+|++|+
T Consensus       135 IG~~~A~~l-~~~G~~V~~~dr~~~~--~------------------~~~~~~~l~ell~~aDvV~l~~  182 (303)
T 1qp8_A          135 IGTRVGKIL-AALGAQVRGFSRTPKE--G------------------PWRFTNSLEEALREARAAVCAL  182 (303)
T ss_dssp             HHHHHHHHH-HHTTCEEEEECSSCCC--S------------------SSCCBSCSHHHHTTCSEEEECC
T ss_pred             HHHHHHHHH-HHCCCEEEEECCCccc--c------------------CcccCCCHHHHHhhCCEEEEeC
Confidence            999999997 9999999999998752  0                  1123468999999999999996

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=100.00  E-value=3.6e-33  Score=249.26  Aligned_cols=177  Identities=22%  Similarity=0.324  Sum_probs=144.9

Q ss_pred             CCeEEEEeCCCCchHHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEc
Q 026023           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (244)
Q Consensus        14 ~~~~ilv~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~   93 (244)
                      +||||++...++.  ..+.+++.+ ++.+....  ..+.++    +. ++|+++++...++++++++ .++|  |||++.
T Consensus         2 ~mmkIl~~~~~p~--~~~~~~~~~-~v~~~~~~--~~~~~~----l~-~ad~li~~~~~~v~~~ll~-~~~L--k~I~~~   68 (381)
T 3oet_A            2 NAMKILVDENMPY--ARELFSRLG-EVKAVPGR--PIPVEE----LN-HADALMVRSVTKVNESLLS-GTPI--NFVGTA   68 (381)
T ss_dssp             CCCEEEEETTSTT--HHHHHTTSS-EEEEECC-----CHHH----HT-TCSEEEECTTSCBSHHHHT-TSCC--CEEEES
T ss_pred             CceEEEECCCCcH--HHHHHhhCC-cEEEeCCC--CCCHHH----HC-CCEEEEECCCCCCCHHHHc-CCCC--EEEEEc
Confidence            4689999987764  246666654 77654322  234443    45 5999999877789999999 6778  999999


Q ss_pred             ccCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcC
Q 026023           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (244)
Q Consensus        94 ~aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~  173 (244)
                      ++|+||||.+++.++||.|+|+||+|+.+||||+++++|++.|+.                     +.++.|+||||||+
T Consensus        69 ~~G~D~iD~~~~~~~gI~v~n~pg~~~~~VAE~~l~~lL~l~r~~---------------------g~~l~gktvGIIGl  127 (381)
T 3oet_A           69 TAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAERD---------------------GFSLRDRTIGIVGV  127 (381)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHHT---------------------TCCGGGCEEEEECC
T ss_pred             cccccccCHHHHHhCCEEEEECCCcCcchhHHHHHHHHHHHHHhc---------------------CCccCCCEEEEEeE
Confidence            999999999999999999999999999999999999999999862                     24699999999999


Q ss_pred             ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       174 G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      |+||+.+|++| ++|||+|++|||+....  +                 ......++++++++||+|++||
T Consensus       128 G~IG~~vA~~l-~a~G~~V~~~d~~~~~~--~-----------------~~~~~~sl~ell~~aDiV~l~~  178 (381)
T 3oet_A          128 GNVGSRLQTRL-EALGIRTLLCDPPRAAR--G-----------------DEGDFRTLDELVQEADVLTFHT  178 (381)
T ss_dssp             SHHHHHHHHHH-HHTTCEEEEECHHHHHT--T-----------------CCSCBCCHHHHHHHCSEEEECC
T ss_pred             CHHHHHHHHHH-HHCCCEEEEECCChHHh--c-----------------cCcccCCHHHHHhhCCEEEEcC
Confidence            99999999997 99999999999854321  0                 0123579999999999999997

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=99.97  E-value=1.4e-31  Score=231.92  Aligned_cols=148  Identities=26%  Similarity=0.379  Sum_probs=127.1

Q ss_pred             CccEEEeccCccccHHHHHHhhccCCcEEEEcccCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHH
Q 026023           62 KCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEA  141 (244)
Q Consensus        62 ~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~  141 (244)
                      ++|+++++. .++      .+|+|  |||++.|+|+||||.+++.++++.++| ++.++.+||||+++++|++.|+++.+
T Consensus        34 ~ad~li~~~-~~~------~~~~L--k~I~~~~~G~d~id~~~~~~~~~~~~~-~~~~~~~vAE~~~~~~L~~~R~~~~~  103 (290)
T 3gvx_A           34 DAEAQVIKD-RYV------LGKRT--KMIQAISAGVDHIDVNGIPENVVLCSN-AGAYSISVAEHAFALLLAHAKNILEN  103 (290)
T ss_dssp             CCSEEEESS-CCC------CCSSC--CEEEECSSCCTTSCGGGSCTTSEEECC-HHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             hhhhhhhhh-hhh------hhhhh--HHHHHHhcCCceeecCCCccceEEeec-CCcceeeHHHHHHHHHHHHHHhhhhh
Confidence            599999853 333      68988  999999999999999999887665555 58889999999999999999999999


Q ss_pred             HHHHHcCCCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCC
Q 026023          142 DEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP  221 (244)
Q Consensus       142 ~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (244)
                      .+.+++|.|...     ...++.|+||||+|+|+||+.+|++| ++|||+|++|||++.+.  +               .
T Consensus       104 ~~~~~~g~w~~~-----~~~~l~g~tvGIIGlG~IG~~vA~~l-~~~G~~V~~~dr~~~~~--~---------------~  160 (290)
T 3gvx_A          104 NELMKAGIFRQS-----PTTLLYGKALGILGYGGIGRRVAHLA-KAFGMRVIAYTRSSVDQ--N---------------V  160 (290)
T ss_dssp             HHHHHTTCCCCC-----CCCCCTTCEEEEECCSHHHHHHHHHH-HHHTCEEEEECSSCCCT--T---------------C
T ss_pred             hhHhhhcccccC-----CceeeecchheeeccCchhHHHHHHH-HhhCcEEEEEecccccc--c---------------c
Confidence            999999999742     23689999999999999999999997 99999999999987542  0               0


Q ss_pred             ccccccCCHHHHhhhCCEEEEeC
Q 026023          222 VTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       222 ~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                        ....+++++++++||+|++||
T Consensus       161 --~~~~~~l~ell~~aDiV~l~~  181 (290)
T 3gvx_A          161 --DVISESPADLFRQSDFVLIAI  181 (290)
T ss_dssp             --SEECSSHHHHHHHCSEEEECC
T ss_pred             --ccccCChHHHhhccCeEEEEe
Confidence              123469999999999999996

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=99.97  E-value=5.8e-31  Score=235.42  Aligned_cols=175  Identities=19%  Similarity=0.313  Sum_probs=141.8

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEccc
Q 026023           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (244)
Q Consensus        16 ~~ilv~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~a   95 (244)
                      |||++...++.  ..+.+++.+ ++.+....  ..+.++    +. ++|+++++...++++++++ +|+|  |||++.++
T Consensus         1 mkil~~~~~~~--~~~~~~~~~-~v~~~~~~--~~~~~~----l~-~ad~li~~~~~~~~~~~l~-~~~L--k~I~~~~~   67 (380)
T 2o4c_A            1 MRILADENIPV--VDAFFADQG-SIRRLPGR--AIDRAA----LA-EVDVLLVRSVTEVSRAALA-GSPV--RFVGTCTI   67 (380)
T ss_dssp             CEEEEETTCTT--HHHHHGGGS-EEEEECGG--GCSTTT----TT-TCSEEEECTTSCBCHHHHT-TSCC--CEEEECSS
T ss_pred             CEEEEecCchH--HHHHHHhCC-cEEEecCC--cCChHH----HC-CcEEEEEcCCCCCCHHHhc-CCCc--eEEEEcCc
Confidence            47888776654  245665554 66554322  123333    34 5999998876789999999 8988  99999999


Q ss_pred             CCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh
Q 026023           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR  175 (244)
Q Consensus        96 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~  175 (244)
                      |+||+|.+++.++||.|+|+||+|+.+||||+++++|++.|++                     +.++.|+||||||+|+
T Consensus        68 G~D~iD~~~~~~~gI~v~n~pg~~~~~vAE~~l~~lL~l~r~~---------------------~~~l~g~tvGIIGlG~  126 (380)
T 2o4c_A           68 GTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAEVR---------------------GADLAERTYGVVGAGQ  126 (380)
T ss_dssp             CSTTBCHHHHHHHTCEEECCTTTTHHHHHHHHHHHHHHHHHHH---------------------TCCGGGCEEEEECCSH
T ss_pred             ccchhhHHHHHhCCCEEEeCCCcChHHHHHHHHHHHHHHHhhh---------------------hcccCCCEEEEEeCCH
Confidence            9999999999999999999999999999999999999999873                     1469999999999999


Q ss_pred             HHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       176 IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      ||+.+|++| ++|||+|++|||++...  +                .+ ....++++++++||+|++|+
T Consensus       127 IG~~vA~~l-~~~G~~V~~~d~~~~~~--~----------------~g-~~~~~l~ell~~aDvV~l~~  175 (380)
T 2o4c_A          127 VGGRLVEVL-RGLGWKVLVCDPPRQAR--E----------------PD-GEFVSLERLLAEADVISLHT  175 (380)
T ss_dssp             HHHHHHHHH-HHTTCEEEEECHHHHHH--S----------------TT-SCCCCHHHHHHHCSEEEECC
T ss_pred             HHHHHHHHH-HHCCCEEEEEcCChhhh--c----------------cC-cccCCHHHHHHhCCEEEEec
Confidence            999999997 89999999999865331  0                01 12468999999999999996

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=99.93  E-value=8.9e-26  Score=196.06  Aligned_cols=188  Identities=15%  Similarity=0.087  Sum_probs=142.4

Q ss_pred             CCeEEEEeCCCC-chHHHHHHHhCCCeEEEeccCCCC------CCHHHHHHHhcCCccEEEec----------------c
Q 026023           14 GKYRVVSTKPMP-GTRWINLLIEQDCRVEICTQKKTI------LSVEDIIALIGDKCDGVIGQ----------------L   70 (244)
Q Consensus        14 ~~~~ilv~~~~~-~~~~~~~l~~~~~~v~~~~~~~~~------~~~~~~~~~~~~~ad~ii~~----------------~   70 (244)
                      ..|+|++..... ...+.+.|.+.++++.+...++..      ...+++.+.+. ++|+++++                .
T Consensus         4 ~~m~i~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~ii~~~~~~~~~~~i~~~~~~~   82 (293)
T 3d4o_A            4 TGKHVVIIGGDARQLEIIRKLSTFDAKISLVGFDQLDDGFIGVTKMRIDEVDWN-TVDAILLPISGTNEAGKVDTIFSNE   82 (293)
T ss_dssp             TTCEEEEECBCHHHHHHHHHHHHTTCEEEEESCTTCC--CTTCEEECGGGCCGG-GCSEEECCTTCCCTTCBCCBSSCSC
T ss_pred             cCcEEEEECCCHHHHHHHHHHHhCCCEEEEeccccccccccccccccchHHHHh-cCCEEEeccccccCCceeecccccC
Confidence            457788876432 224567788888898765432211      12345566666 49999985                2


Q ss_pred             CccccHHHHHHhhccCCcEEEEcccCCCccCh-HHHhhCCcEEEecC------CCCCcchHHHHHHHHHHHHhChHHHHH
Q 026023           71 TEDWGETLFAALSRAGGKAFSNMAVGYNNVDV-NAANKYGIAVGNTP------GVLTETTAELAASLSLAAARRIVEADE  143 (244)
Q Consensus        71 ~~~~~~~~l~~~p~l~~k~I~~~~aG~d~id~-~~~~~~gI~v~n~~------~~~~~~vAE~~l~~~L~~~R~~~~~~~  143 (244)
                      ..++++++++.+|++  |+|+   +|+||+|+ +++.++||.|+|++      ++++.+|||++++++|..         
T Consensus        83 ~~~~~~~~l~~~~~l--~~i~---~G~d~id~~~~~~~~gi~v~~~~~~~~~~~~~~~svae~a~~~~l~~---------  148 (293)
T 3d4o_A           83 SIVLTEEMIEKTPNH--CVVY---SGISNTYLNQCMKKTNRTLVKLMERDDIAIYNSIPTAEGTIMMAIQH---------  148 (293)
T ss_dssp             CCBCCHHHHHTSCTT--CEEE---ESSCCHHHHHHHHHHTCEEEEGGGCHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred             CccchHHHHHhCCCC--CEEE---ecCCCHHHHHHHHHcCCeEEEecCCceeeeeccHhHHHHHHHHHHHh---------
Confidence            335899999999998  9997   89999998 89999999999998      789999999999999872         


Q ss_pred             HHHcCCCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCcc
Q 026023          144 FMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT  223 (244)
Q Consensus       144 ~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (244)
                                     .+.++.|++|||+|+|+||+.+|+++ ++|||+|++++|++... +. ...+       +   ..
T Consensus       149 ---------------~~~~l~g~~v~IiG~G~iG~~~a~~l-~~~G~~V~~~dr~~~~~-~~-~~~~-------g---~~  200 (293)
T 3d4o_A          149 ---------------TDFTIHGANVAVLGLGRVGMSVARKF-AALGAKVKVGARESDLL-AR-IAEM-------G---ME  200 (293)
T ss_dssp             ---------------CSSCSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSHHHH-HH-HHHT-------T---SE
T ss_pred             ---------------cCCCCCCCEEEEEeeCHHHHHHHHHH-HhCCCEEEEEECCHHHH-HH-HHHC-------C---Ce
Confidence                           12468999999999999999999997 89999999999987542 11 1111       1   11


Q ss_pred             ccccCCHHHHhhhCCEEEEeC
Q 026023          224 WKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       224 ~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      .....++++++++||+|++|+
T Consensus       201 ~~~~~~l~~~l~~aDvVi~~~  221 (293)
T 3d4o_A          201 PFHISKAAQELRDVDVCINTI  221 (293)
T ss_dssp             EEEGGGHHHHTTTCSEEEECC
T ss_pred             ecChhhHHHHhcCCCEEEECC
Confidence            112357999999999999986

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=99.87  E-value=2e-22  Score=175.45  Aligned_cols=194  Identities=15%  Similarity=0.084  Sum_probs=135.3

Q ss_pred             CCeEEEEeCCCC-chHHHHHHHhCCCeEEEeccCCCCC------CHHHHHHHhcCCccEEEec---c-----------Cc
Q 026023           14 GKYRVVSTKPMP-GTRWINLLIEQDCRVEICTQKKTIL------SVEDIIALIGDKCDGVIGQ---L-----------TE   72 (244)
Q Consensus        14 ~~~~ilv~~~~~-~~~~~~~l~~~~~~v~~~~~~~~~~------~~~~~~~~~~~~ad~ii~~---~-----------~~   72 (244)
                      ..|+|++..... ...+.+.|.+.++++.+...++...      ..+++.+.+. ++|+++++   .           ..
T Consensus         6 ~~mki~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~g~~~~~~~~~~~~-~~d~ii~~~~~~~~~~~i~s~~a~~   84 (300)
T 2rir_A            6 TGLKIAVIGGDARQLEIIRKLTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQ-QIDSIILPVSATTGEGVVSTVFSNE   84 (300)
T ss_dssp             CSCEEEEESBCHHHHHHHHHHHHTTCEEEEESCTTSSCCCTTEEECCGGGSCGG-GCSEEECCSSCEETTTEECBSSCSS
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccceeccchHHHHh-cCCEEEeccccccCCcccccccccC
Confidence            457888876532 2245677888888887654332211      1233455566 59999872   1           23


Q ss_pred             c--ccHHHHHHhhccCCcEEEEcccCCCccC-hHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCC
Q 026023           73 D--WGETLFAALSRAGGKAFSNMAVGYNNVD-VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGL  149 (244)
Q Consensus        73 ~--~~~~~l~~~p~l~~k~I~~~~aG~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~  149 (244)
                      +  ++++.++.+|++  ++|.   +|+||+| ++++.++||.|+|+++.+  ++         ++.|+++..     +|.
T Consensus        85 ~~~~~~~~l~~~~~l--~~i~---~g~~~~d~~~~~~~~gi~v~~~~~~~--~v---------~~~r~~~~~-----~g~  143 (300)
T 2rir_A           85 EVVLKQDHLDRTPAH--CVIF---SGISNAYLENIAAQAKRKLVKLFERD--DI---------AIYNSIPTV-----EGT  143 (300)
T ss_dssp             CEECCHHHHHTSCTT--CEEE---ESSCCHHHHHHHHHTTCCEEEGGGSH--HH---------HHHHHHHHH-----HHH
T ss_pred             CccchHHHHhhcCCC--CEEE---EecCCHHHHHHHHHCCCEEEeecCCC--ce---------EEEcCccHH-----HHH
Confidence            4  789999999998  9987   8999999 999999999999999974  22         334555444     333


Q ss_pred             CCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCC
Q 026023          150 YDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS  229 (244)
Q Consensus       150 w~~~~~~~~~~~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (244)
                      |.. . ....+.++.|+||||+|+|+||+.+|+++ ++|||+|+++||++... +. ...+       +   .......+
T Consensus       144 ~~~-~-~~~~~~~l~g~~v~IiG~G~iG~~~a~~l-~~~G~~V~~~d~~~~~~-~~-~~~~-------g---~~~~~~~~  208 (300)
T 2rir_A          144 IML-A-IQHTDYTIHGSQVAVLGLGRTGMTIARTF-AALGANVKVGARSSAHL-AR-ITEM-------G---LVPFHTDE  208 (300)
T ss_dssp             HHH-H-HHTCSSCSTTSEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSHHHH-HH-HHHT-------T---CEEEEGGG
T ss_pred             HHH-H-HHhcCCCCCCCEEEEEcccHHHHHHHHHH-HHCCCEEEEEECCHHHH-HH-HHHC-------C---CeEEchhh
Confidence            421 0 00134679999999999999999999997 89999999999987542 11 1111       1   11112358


Q ss_pred             HHHHhhhCCEEEEeC
Q 026023          230 MDEVLREADVVCTLC  244 (244)
Q Consensus       230 l~ell~~sD~Vvl~~  244 (244)
                      +++++++||+|++|+
T Consensus       209 l~~~l~~aDvVi~~~  223 (300)
T 2rir_A          209 LKEHVKDIDICINTI  223 (300)
T ss_dssp             HHHHSTTCSEEEECC
T ss_pred             HHHHhhCCCEEEECC
Confidence            999999999999986

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=99.77  E-value=1.2e-19  Score=166.16  Aligned_cols=129  Identities=15%  Similarity=0.208  Sum_probs=106.6

Q ss_pred             hhccCCcEEE-EcccCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccc
Q 026023           82 LSRAGGKAFS-NMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVG  160 (244)
Q Consensus        82 ~p~l~~k~I~-~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~  160 (244)
                      +|++  +.|+ ..++|+|++  +++.++||.++|++++++ +|||       ++.|++..+.+.+++| |.+     ..+
T Consensus       191 ~~~l--~gi~eet~~Gvd~l--~a~~~~Gilv~p~~~vn~-sVae-------~l~r~~~~~~~~l~~g-w~r-----~~~  252 (479)
T 1v8b_A          191 AKKI--IGVSEETTTGVLRL--KKMDKQNELLFTAINVND-AVTK-------QKYDNVYGCRHSLPDG-LMR-----ATD  252 (479)
T ss_dssp             HTTC--CEEEECSHHHHHHH--HHHHHTTCCCSEEEECTT-SHHH-------HTTHHHHHHHHHHHHH-HHH-----HHC
T ss_pred             hcCe--EEEEEeeCccHhHH--HHHHHcCCEEeccCCccH-HHHH-------HHHhchHhHHHHHhhh-hhh-----ccc
Confidence            4666  8888 889999998  789999999999999999 9999       4568888888888888 753     345


Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      .++.|+||||+|+|.||+.+|+++ ++|||+|+++++++....+. .+             .++ ...++++++++||+|
T Consensus       253 ~~l~GktVgIIG~G~IG~~vA~~l-~~~G~~Viv~d~~~~~~~~a-~~-------------~g~-~~~~l~ell~~aDiV  316 (479)
T 1v8b_A          253 FLISGKIVVICGYGDVGKGCASSM-KGLGARVYITEIDPICAIQA-VM-------------EGF-NVVTLDEIVDKGDFF  316 (479)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHH-HHHTCEEEEECSCHHHHHHH-HT-------------TTC-EECCHHHHTTTCSEE
T ss_pred             cccCCCEEEEEeeCHHHHHHHHHH-HhCcCEEEEEeCChhhHHHH-HH-------------cCC-EecCHHHHHhcCCEE
Confidence            689999999999999999999997 99999999999997642111 10             111 235899999999999


Q ss_pred             EEeC
Q 026023          241 CTLC  244 (244)
Q Consensus       241 vl~~  244 (244)
                      ++|+
T Consensus       317 i~~~  320 (479)
T 1v8b_A          317 ITCT  320 (479)
T ss_dssp             EECC
T ss_pred             EECC
Confidence            9984

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=99.77  E-value=1.5e-19  Score=166.18  Aligned_cols=129  Identities=16%  Similarity=0.216  Sum_probs=102.8

Q ss_pred             hhccCCcEEE-EcccCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccc
Q 026023           82 LSRAGGKAFS-NMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVG  160 (244)
Q Consensus        82 ~p~l~~k~I~-~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~  160 (244)
                      +|++  +.|. ..++|+|++  +++.++||.++|++++++ +|||+.       .|++....+.+..| |.+     ..+
T Consensus       211 ~~~l--~gi~eet~~Gvd~l--~a~~~~Gilv~n~~~vn~-sVae~l-------~r~~~~~~~~l~~g-w~~-----~~g  272 (494)
T 3d64_A          211 LAHI--KGVTEETTTGVHRL--YQMEKDGRLPFPAFNVND-SVTKSK-------FDNLYGCRESLVDG-IKR-----ATD  272 (494)
T ss_dssp             HTTC--CCEEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHHH-------HHHHHHHHTTHHHH-HHH-----HHC
T ss_pred             hhCc--EEEEEEcccCHhhH--HHHHHCCCEEEECCCccH-HHHHHH-------HhhhHhhhhhhhhh-hhh-----ccc
Confidence            3666  8888 889999988  789999999999999999 999953       46666666556555 642     345


Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      .++.|+||||+|+|+||+.+|+++ ++|||+|++++|++....+...              .++ ...++++++++||+|
T Consensus       273 ~~L~GktVgIIG~G~IG~~vA~~l-~~~G~~V~v~d~~~~~~~~a~~--------------~G~-~~~~l~ell~~aDiV  336 (494)
T 3d64_A          273 VMIAGKIAVVAGYGDVGKGCAQSL-RGLGATVWVTEIDPICALQAAM--------------EGY-RVVTMEYAADKADIF  336 (494)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHH-HTTTCEEEEECSCHHHHHHHHT--------------TTC-EECCHHHHTTTCSEE
T ss_pred             cccCCCEEEEEccCHHHHHHHHHH-HHCCCEEEEEeCChHhHHHHHH--------------cCC-EeCCHHHHHhcCCEE
Confidence            789999999999999999999997 9999999999999764211110              111 235899999999999


Q ss_pred             EEeC
Q 026023          241 CTLC  244 (244)
Q Consensus       241 vl~~  244 (244)
                      ++|+
T Consensus       337 i~~~  340 (494)
T 3d64_A          337 VTAT  340 (494)
T ss_dssp             EECS
T ss_pred             EECC
Confidence            9985

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=99.57  E-value=1.6e-14  Score=129.39  Aligned_cols=193  Identities=15%  Similarity=0.106  Sum_probs=128.5

Q ss_pred             HHHHHHhCCCeEEEeccC--CCCCCHHHHH-----------HHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEccc
Q 026023           29 WINLLIEQDCRVEICTQK--KTILSVEDII-----------ALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (244)
Q Consensus        29 ~~~~l~~~~~~v~~~~~~--~~~~~~~~~~-----------~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~a   95 (244)
                      ..+.|.+.|++|.+-...  ...++++++.           +.+. ++|+|+.. ..++++++....|..  .++.....
T Consensus        22 ~v~~L~~~G~~V~ve~~ag~~~~f~d~~y~~aGa~i~~~~~~~~~-~adii~~v-k~p~~~e~~~l~~~~--~l~~~~~~   97 (377)
T 2vhw_A           22 GVAELTRRGHEVLIQAGAGEGSAITDADFKAAGAQLVGTADQVWA-DADLLLKV-KEPIAAEYGRLRHGQ--ILFTFLHL   97 (377)
T ss_dssp             HHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEESCHHHHHH-HCSEEECS-SCCCGGGGGGCCTTC--EEEECCCG
T ss_pred             HHHHHHhCCCEEEEeCCCCcCCCCCHHHHHHCCCEEecCHHHHhc-cCCEEEEe-CCCChHHHhhcCCCC--EEEEEecc
Confidence            467887888888653211  1245677766           3333 48977654 455666666556654  77777788


Q ss_pred             CCCccChHHHhhCCcEEE----------ecCCCCCcchHHHHHHHHHHHH-hChHHHHHHHHcCCCCCCCCCcccccccC
Q 026023           96 GYNNVDVNAANKYGIAVG----------NTPGVLTETTAELAASLSLAAA-RRIVEADEFMRAGLYDGWLPNLFVGNLLK  164 (244)
Q Consensus        96 G~d~id~~~~~~~gI~v~----------n~~~~~~~~vAE~~l~~~L~~~-R~~~~~~~~~~~~~w~~~~~~~~~~~~l~  164 (244)
                      ++|...++++.++||++.          |.|.+  .++||++..+++.+. |++    .....|+|..|..    ..++.
T Consensus        98 ~~~~~~l~~l~~~gi~~ia~e~v~~~~~~~p~~--s~~ae~ag~~a~~~a~r~l----~~~~~g~~~~~~~----~~~l~  167 (377)
T 2vhw_A           98 AASRACTDALLDSGTTSIAYETVQTADGALPLL--APMSEVAGRLAAQVGAYHL----MRTQGGRGVLMGG----VPGVE  167 (377)
T ss_dssp             GGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTT--HHHHHHHHHHHHHHHHHHT----SGGGTSCCCCTTC----BTTBC
T ss_pred             cCCHHHHHHHHHcCCeEEEeeeccccCCCcccc--CchHHHHHHHHHHHHHHHH----HHhcCCCcccccC----CCCCC
Confidence            899889999999999997          34433  477799986665555 665    3344555532221    24699


Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      |++|+|+|+|.||+.+|+.+ ++||++|+++|+++... +...+.+|..      .........+++++++++|+|+.+
T Consensus       168 g~~V~ViG~G~iG~~~a~~a-~~~Ga~V~~~d~~~~~l-~~~~~~~g~~------~~~~~~~~~~l~~~l~~aDvVi~~  238 (377)
T 2vhw_A          168 PADVVVIGAGTAGYNAARIA-NGMGATVTVLDINIDKL-RQLDAEFCGR------IHTRYSSAYELEGAVKRADLVIGA  238 (377)
T ss_dssp             CCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHH-HHHHHHTTTS------SEEEECCHHHHHHHHHHCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHH-HhCCCEEEEEeCCHHHH-HHHHHhcCCe------eEeccCCHHHHHHHHcCCCEEEEC
Confidence            99999999999999999996 99999999999987541 1111112110      000001124688999999999985

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=99.48  E-value=8.8e-14  Score=125.48  Aligned_cols=161  Identities=12%  Similarity=0.083  Sum_probs=107.7

Q ss_pred             HHHHHHhCCCeEEEeccC--CCCCCHHHHHHH---------hcCCccEEEeccCccccHHHHHHh-hccCCcEEEEcccC
Q 026023           29 WINLLIEQDCRVEICTQK--KTILSVEDIIAL---------IGDKCDGVIGQLTEDWGETLFAAL-SRAGGKAFSNMAVG   96 (244)
Q Consensus        29 ~~~~l~~~~~~v~~~~~~--~~~~~~~~~~~~---------~~~~ad~ii~~~~~~~~~~~l~~~-p~l~~k~I~~~~aG   96 (244)
                      ....|.+.|++|.+....  ...+++++..++         +.+ +|+++.. .. .+++.++.+ |++  ++|+..+.|
T Consensus        29 ~v~~L~~~G~~V~ve~~ag~~~gf~d~~y~~aGa~i~~~~~~~~-adiil~v-k~-p~~~~i~~l~~~~--~li~~~~~~  103 (401)
T 1x13_A           29 TVEQLLKLGFTVAVESGAGQLASFDDKAFVQAGAEIVEGNSVWQ-SEIILKV-NA-PLDDEIALLNPGT--TLVSFIWPA  103 (401)
T ss_dssp             HHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEECGGGGGS-SSEEECS-SC-CCHHHHTTCCTTC--EEEECCCGG
T ss_pred             HHHHHHHCCCEEEEEECCCcccCCChHHHHHCCCEEeccHHHhc-CCeEEEe-CC-CCHHHHHHhcCCC--cEEEEecCC
Confidence            467787888888653321  124677888765         554 8988764 22 356677776 556  999999999


Q ss_pred             CCccChHHHhhCCcEEEecCCCCCcchHHHHHHHH---HHHHhChHHHHHHHHcCCC--CCCCCCccc-ccccCCCEEEE
Q 026023           97 YNNVDVNAANKYGIAVGNTPGVLTETTAELAASLS---LAAARRIVEADEFMRAGLY--DGWLPNLFV-GNLLKGQTVGV  170 (244)
Q Consensus        97 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~---L~~~R~~~~~~~~~~~~~w--~~~~~~~~~-~~~l~g~tvgI  170 (244)
                      +|+.+++++.++||++.+.     +.|+|++.++.   ++..+.+.. ...++.+.|  .+|...... ..++.|++|+|
T Consensus       104 ~d~~~~~al~~~gI~v~~~-----e~v~~~~~a~~l~~l~~~a~~ag-~~av~~~~~~~~~~~~~~~~~~g~l~g~~V~V  177 (401)
T 1x13_A          104 QNPELMQKLAERNVTVMAM-----DSVPRISRAQSLDALSSMANIAG-YRAIVEAAHEFGRFFTGQITAAGKVPPAKVMV  177 (401)
T ss_dssp             GCHHHHHHHHHTTCEEEEG-----GGCCCSGGGGGGCHHHHHHHHHH-HHHHHHHHHHCSSCSSCEEETTEEECCCEEEE
T ss_pred             CCHHHHHHHHHCCCEEEEe-----ehhhhhhhhcccchHHHHHHHHH-HHHHHHHHHhcccccCCceeeccCcCCCEEEE
Confidence            9999999999999999753     44444444432   222222222 222222222  122111000 01588999999


Q ss_pred             EcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       171 vG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +|+|.||+.+++.+ ++||++|+++|+++..
T Consensus       178 iGaG~iG~~aa~~a-~~~Ga~V~v~D~~~~~  207 (401)
T 1x13_A          178 IGAGVAGLAAIGAA-NSLGAIVRAFDTRPEV  207 (401)
T ss_dssp             ECCSHHHHHHHHHH-HHTTCEEEEECSCGGG
T ss_pred             ECCCHHHHHHHHHH-HHCCCEEEEEcCCHHH
Confidence            99999999999996 9999999999998754

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=99.46  E-value=5.5e-13  Score=119.60  Aligned_cols=166  Identities=14%  Similarity=0.155  Sum_probs=107.8

Q ss_pred             HHHHHHhCCCeEEEeccC--CCCCCHHHHH-----------HHhcCCccEEEeccCccc----cHHHHHHhhccCCcEEE
Q 026023           29 WINLLIEQDCRVEICTQK--KTILSVEDII-----------ALIGDKCDGVIGQLTEDW----GETLFAALSRAGGKAFS   91 (244)
Q Consensus        29 ~~~~l~~~~~~v~~~~~~--~~~~~~~~~~-----------~~~~~~ad~ii~~~~~~~----~~~~l~~~p~l~~k~I~   91 (244)
                      ..+.|.+.|++|.+-...  ...++++++.           +.+. ++|+++.. ..++    +++.++.+++ +.++++
T Consensus        22 ~v~~L~~~G~~V~ve~~ag~~~~~~d~~y~~aGa~i~~~~~~~~~-~adiil~v-~~p~~~~~~~~~i~~l~~-~~~~i~   98 (384)
T 1l7d_A           22 VVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALS-QADVVWKV-QRPMTAEEGTDEVALIKE-GAVLMC   98 (384)
T ss_dssp             HHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHS-SCSEEEEE-ECCCCGGGSCCGGGGSCT-TCEEEE
T ss_pred             HHHHHHhCCCEEEEEcCCCccCCCCHHHHHHCCCEEecChhhhhc-CCCEEEEe-cCcccccCCHHHHHhhcc-CCEEEE
Confidence            467787788888653221  1245667766           4455 49998865 3344    6777788865 338999


Q ss_pred             EcccCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCC--CCCCCcccc-cccCCCEE
Q 026023           92 NMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD--GWLPNLFVG-NLLKGQTV  168 (244)
Q Consensus        92 ~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~--~~~~~~~~~-~~l~g~tv  168 (244)
                      ....+.|+.+++++.++||.+++. ....+.+++..+. +|+..+++ ..+..+..+.|.  ++.+....+ .++.|++|
T Consensus        99 ~~~~~~~~~~~~~~~~~gi~~~~~-e~~~~~~~~~~l~-~l~~~a~~-ag~~av~~~~~~~~~~~~~~~~~~~~l~g~~V  175 (384)
T 1l7d_A           99 HLGALTNRPVVEALTKRKITAYAM-ELMPRISRAQSMD-ILSSQSNL-AGYRAVIDGAYEFARAFPMMMTAAGTVPPARV  175 (384)
T ss_dssp             ECCGGGCHHHHHHHHHTTCEEEEG-GGCCCSGGGGGGC-HHHHHHHH-HHHHHHHHHHHHCSSCSSCEEETTEEECCCEE
T ss_pred             EecccCCHHHHHHHHHCCCEEEEe-ccccccccccccc-hhhHHHHH-HHHHHHHHHHHHhhhcccchhccCCCCCCCEE
Confidence            999999999999999999999985 2222222222222 22222222 122222222221  111111111 36899999


Q ss_pred             EEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       169 gIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +|+|+|.||+.+++.+ ++||++|+++|+++..
T Consensus       176 ~ViGaG~iG~~aa~~a-~~~Ga~V~~~d~~~~~  207 (384)
T 1l7d_A          176 LVFGVGVAGLQAIATA-KRLGAVVMATDVRAAT  207 (384)
T ss_dssp             EEECCSHHHHHHHHHH-HHTTCEEEEECSCSTT
T ss_pred             EEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            9999999999999996 9999999999998754

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=99.44  E-value=4.8e-14  Score=129.83  Aligned_cols=124  Identities=16%  Similarity=0.195  Sum_probs=92.1

Q ss_pred             EEEEcccCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEE
Q 026023           89 AFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTV  168 (244)
Q Consensus        89 ~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tv  168 (244)
                      .+...++|+|++  .++.++|+.++|+++++. +|||+.       .|++....+....+ |.+     ..+..+.|++|
T Consensus       214 vveetgtGVd~l--~a~~~~Gilv~~~~~vn~-sVae~~-------~r~l~~~~~s~~~g-~~r-----~~~~~l~GktV  277 (494)
T 3ce6_A          214 VTEETTTGVLRL--YQFAAAGDLAFPAINVND-SVTKSK-------FDNKYGTRHSLIDG-INR-----GTDALIGGKKV  277 (494)
T ss_dssp             EEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHHT-------THHHHHHHHHHHHH-HHH-----HHCCCCTTCEE
T ss_pred             EEEEeCCChhHH--HHHHHcCCEEEecCCccH-HHHHHH-------HhhhhhhhhhhhHH-HHh-----ccCCCCCcCEE
Confidence            445889999998  678899999999999999 999953       35554443333333 321     12346899999


Q ss_pred             EEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       169 gIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +|+|+|.||+.+|+++ ++||++|+++++++......  ..       .+     + ...+++++++.+|+|+.|+
T Consensus       278 ~IiG~G~IG~~~A~~l-ka~Ga~Viv~d~~~~~~~~A--~~-------~G-----a-~~~~l~e~l~~aDvVi~at  337 (494)
T 3ce6_A          278 LICGYGDVGKGCAEAM-KGQGARVSVTEIDPINALQA--MM-------EG-----F-DVVTVEEAIGDADIVVTAT  337 (494)
T ss_dssp             EEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHH--HH-------TT-----C-EECCHHHHGGGCSEEEECS
T ss_pred             EEEccCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHH--HH-------cC-----C-EEecHHHHHhCCCEEEECC
Confidence            9999999999999997 99999999999987542111  11       11     1 1247899999999999874

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=99.26  E-value=1.6e-11  Score=110.87  Aligned_cols=118  Identities=17%  Similarity=0.228  Sum_probs=77.0

Q ss_pred             cccCCCccC-hHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEE
Q 026023           93 MAVGYNNVD-VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI  171 (244)
Q Consensus        93 ~~aG~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIv  171 (244)
                      ..+|+.++. .....+.+|+|.|++..    +.++..-........+.....+.             .+.++.|++|||+
T Consensus       155 TttGv~rL~~~~~~g~L~iPVinvnds----vtk~~~Dn~~Gt~~slldgi~ra-------------tg~~L~GktVgIi  217 (436)
T 3h9u_A          155 TTTGVKNLYKRLQRGKLTIPAMNVNDS----VTKSKFDNLYGCRESLVDGIKRA-------------TDVMIAGKTACVC  217 (436)
T ss_dssp             SHHHHHHHHHHHHHTCCCSCEEECTTS----HHHHTTHHHHHHHHHHHHHHHHH-------------HCCCCTTCEEEEE
T ss_pred             cCcChHHHHHHHHcCCCCCceEeechh----hhhhhhhccccchHHHHHHHHHh-------------cCCcccCCEEEEE
Confidence            445554332 23344689999999764    44443333333222222111111             2356899999999


Q ss_pred             cCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       172 G~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      |+|+||+.+|++| ++|||+|+++++++....+....              + ....+++|++++||+|+++
T Consensus       218 G~G~IG~~vA~~L-ka~Ga~Viv~D~~p~~a~~A~~~--------------G-~~~~sL~eal~~ADVVilt  273 (436)
T 3h9u_A          218 GYGDVGKGCAAAL-RGFGARVVVTEVDPINALQAAME--------------G-YQVLLVEDVVEEAHIFVTT  273 (436)
T ss_dssp             CCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHHHT--------------T-CEECCHHHHTTTCSEEEEC
T ss_pred             eeCHHHHHHHHHH-HHCCCEEEEECCChhhhHHHHHh--------------C-CeecCHHHHHhhCCEEEEC
Confidence            9999999999997 99999999999987543221111              1 1235899999999999975

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=99.24  E-value=7.7e-11  Score=105.04  Aligned_cols=194  Identities=13%  Similarity=0.113  Sum_probs=121.8

Q ss_pred             HHHHHHhCCCeEEEeccC--CCCCCHHHHHHH---------hcCCccEEEeccCccccHHHHHHh-hccCCcEEEEcccC
Q 026023           29 WINLLIEQDCRVEICTQK--KTILSVEDIIAL---------IGDKCDGVIGQLTEDWGETLFAAL-SRAGGKAFSNMAVG   96 (244)
Q Consensus        29 ~~~~l~~~~~~v~~~~~~--~~~~~~~~~~~~---------~~~~ad~ii~~~~~~~~~~~l~~~-p~l~~k~I~~~~aG   96 (244)
                      ..+.|.+.|++|.+-...  ...++++++.+.         +. ++|+|+.. ..+++++ ++.+ |..  +++.....+
T Consensus        22 ~v~~L~~~g~~v~ve~~ag~~~~~~d~~y~~aga~i~~~~~~~-~ad~il~v-k~p~~~~-~~~l~~~~--~~~~~~~~~   96 (369)
T 2eez_A           22 GVESLVRRGHTVLVERGAGEGSGLSDAEYARAGAELVGREEAW-GAEMVVKV-KEPLPEE-YGFLREGL--ILFTYLHLA   96 (369)
T ss_dssp             HHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEECHHHHT-TSSEEECS-SCCCGGG-GGGCCTTC--EEEECCCGG
T ss_pred             HHHHHHhCCCEEEEeCCCCccCCCCHHHHHHCCCEEeccccee-cCCEEEEE-CCCCHHH-HhhcCCCc--EEEEEeccc
Confidence            567888889898653211  124677887751         33 49988754 3344444 5665 444  999999999


Q ss_pred             CCccChHHHhhCCcEEE---ecCCC-CC----cchHHHHH--HHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCC
Q 026023           97 YNNVDVNAANKYGIAVG---NTPGV-LT----ETTAELAA--SLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQ  166 (244)
Q Consensus        97 ~d~id~~~~~~~gI~v~---n~~~~-~~----~~vAE~~l--~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~  166 (244)
                      .|..+++.+.++||++.   +.+.. ..    .++++.+-  +.++++ +.+.....  .++.|.   .   ...++.++
T Consensus        97 ~~~~~~~~l~~~gi~~ia~e~~~~~~~~~~~l~~~s~~ag~~av~~a~-~~l~~~~~--g~~~~~---~---~~~~l~~~  167 (369)
T 2eez_A           97 ADRGLTEAMLRSGVTGIAYETVQLPDGTLPLLVPMSEVAGRMAPQVGA-QFLEKPKG--GRGVLL---G---GVPGVAPA  167 (369)
T ss_dssp             GCHHHHHHHHHHTCEEEEGGGCCCTTCCCTTTHHHHHHHHHHHHHHHH-HHTSGGGT--SCCCCT---T---CBTBBCCC
T ss_pred             CCHHHHHHHHHCCCeEEEeeccccccCCeeecccchHHHHHHHHHHHH-HHHHHhcC--CCceec---C---CCCCCCCC
Confidence            99999999999999997   44432 11    44555444  333332 22222210  111211   1   12468999


Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +|+|+|.|.||+.+++.+ +.+|++|+++|+++... +...+.+|..      .........+++++++.+|+|+.++
T Consensus       168 ~V~ViGaG~iG~~~a~~l-~~~Ga~V~~~d~~~~~~-~~~~~~~g~~------~~~~~~~~~~l~~~~~~~DvVi~~~  237 (369)
T 2eez_A          168 SVVILGGGTVGTNAAKIA-LGMGAQVTILDVNHKRL-QYLDDVFGGR------VITLTATEANIKKSVQHADLLIGAV  237 (369)
T ss_dssp             EEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHH-HHHHHHTTTS------EEEEECCHHHHHHHHHHCSEEEECC
T ss_pred             EEEEECCCHHHHHHHHHH-HhCCCEEEEEECCHHHH-HHHHHhcCce------EEEecCCHHHHHHHHhCCCEEEECC
Confidence            999999999999999997 89999999999987542 2111111110      0000112246889999999998764

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=99.19  E-value=1.4e-10  Score=104.87  Aligned_cols=104  Identities=14%  Similarity=0.196  Sum_probs=72.4

Q ss_pred             hCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHhc
Q 026023          107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE  186 (244)
Q Consensus       107 ~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~IG~~vA~~la~  186 (244)
                      ...+++.|..    +++..+-+-......+.+.......             .+.++.||||||+|+|+||+.+|+++ +
T Consensus       206 ~L~~PvinVn----ds~tK~~fDn~yG~~eslvdgI~Ra-------------tg~~L~GKTVgVIG~G~IGr~vA~~l-r  267 (464)
T 3n58_A          206 LLPFPAINVN----DSVTKSKFDNKYGCKESLVDGIRRG-------------TDVMMAGKVAVVCGYGDVGKGSAQSL-A  267 (464)
T ss_dssp             CCCSCEEECT----TSHHHHTTHHHHHHHHHHHHHHHHH-------------HCCCCTTCEEEEECCSHHHHHHHHHH-H
T ss_pred             CCCCCEEeec----cHhhhhhhhhhhcchHHHHHHHHHh-------------cCCcccCCEEEEECcCHHHHHHHHHH-H
Confidence            4568888875    4555555555555444433222211             23569999999999999999999997 9


Q ss_pred             cCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          187 GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       187 afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      +|||+|+++++.+....+...+              ++ ...++++++++||+|+.+
T Consensus       268 afGa~Viv~d~dp~~a~~A~~~--------------G~-~vv~LeElL~~ADIVv~a  309 (464)
T 3n58_A          268 GAGARVKVTEVDPICALQAAMD--------------GF-EVVTLDDAASTADIVVTT  309 (464)
T ss_dssp             HTTCEEEEECSSHHHHHHHHHT--------------TC-EECCHHHHGGGCSEEEEC
T ss_pred             HCCCEEEEEeCCcchhhHHHhc--------------Cc-eeccHHHHHhhCCEEEEC
Confidence            9999999999887542221111              11 235899999999999986

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=99.17  E-value=1.2e-12  Score=118.15  Aligned_cols=143  Identities=17%  Similarity=0.223  Sum_probs=105.3

Q ss_pred             cEEEEcccCCCccChHHHh-----hCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCC-CCCCCcccc-
Q 026023           88 KAFSNMAVGYNNVDVNAAN-----KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD-GWLPNLFVG-  160 (244)
Q Consensus        88 k~I~~~~aG~d~id~~~~~-----~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~-~~~~~~~~~-  160 (244)
                      +.|...++|+|++++....     ++++.+++.+|. ..+++++.+..++.+.|++..... ...+.|. .+....... 
T Consensus        83 ~~i~~v~~Glds~~vGe~~Il~qvk~~~~~~~~~G~-~~~~~~~~~~~a~~~~k~v~~~~~-~~~~~~s~a~~av~~a~~  160 (404)
T 1gpj_A           83 RHLFRVASGLESMMVGEQEILRQVKKAYDRAARLGT-LDEALKIVFRRAINLGKRAREETR-ISEGAVSIGSAAVELAER  160 (404)
T ss_dssp             HHHHHHHTTTTSSSTTCHHHHHHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHHHHHHHSS-TTCSCCSHHHHHHHHHHH
T ss_pred             hhheeeccCCCCCcCCcchhHHHHHHHHHHHHHcCC-chHHHHHHHHHHhhhhccCcchhh-hcCCCccHHHHHHHHHHH
Confidence            8889999999999987776     778999999888 579999999999999999866543 3344442 000000001 


Q ss_pred             --cccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhC
Q 026023          161 --NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (244)
Q Consensus       161 --~~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s  237 (244)
                        .++.|++|+|+|+|.||+.+++.| +.+|+ +|++++|++... ++....+|       ..   .....++.++++.+
T Consensus       161 ~~~~l~g~~VlIiGaG~iG~~~a~~l-~~~G~~~V~v~~r~~~ra-~~la~~~g-------~~---~~~~~~l~~~l~~a  228 (404)
T 1gpj_A          161 ELGSLHDKTVLVVGAGEMGKTVAKSL-VDRGVRAVLVANRTYERA-VELARDLG-------GE---AVRFDELVDHLARS  228 (404)
T ss_dssp             HHSCCTTCEEEEESCCHHHHHHHHHH-HHHCCSEEEEECSSHHHH-HHHHHHHT-------CE---ECCGGGHHHHHHTC
T ss_pred             HhccccCCEEEEEChHHHHHHHHHHH-HHCCCCEEEEEeCCHHHH-HHHHHHcC-------Cc---eecHHhHHHHhcCC
Confidence              147999999999999999999997 89999 999999987541 22222222       11   11235789999999


Q ss_pred             CEEEEeC
Q 026023          238 DVVCTLC  244 (244)
Q Consensus       238 D~Vvl~~  244 (244)
                      |+|+.|+
T Consensus       229 DvVi~at  235 (404)
T 1gpj_A          229 DVVVSAT  235 (404)
T ss_dssp             SEEEECC
T ss_pred             CEEEEcc
Confidence            9999874

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=99.04  E-value=1.4e-09  Score=97.97  Aligned_cols=67  Identities=21%  Similarity=0.377  Sum_probs=53.5

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      ..+.|++|+|+|+|.||+.+|++| ++|||+|+++++++....+...+              ++ ...++++++++||+|
T Consensus       216 ~~L~GktV~ViG~G~IGk~vA~~L-ra~Ga~Viv~D~dp~ra~~A~~~--------------G~-~v~~Leeal~~ADIV  279 (435)
T 3gvp_A          216 MMFGGKQVVVCGYGEVGKGCCAAL-KAMGSIVYVTEIDPICALQACMD--------------GF-RLVKLNEVIRQVDIV  279 (435)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHHHT--------------TC-EECCHHHHTTTCSEE
T ss_pred             ceecCCEEEEEeeCHHHHHHHHHH-HHCCCEEEEEeCChhhhHHHHHc--------------CC-EeccHHHHHhcCCEE
Confidence            569999999999999999999997 99999999999987432111111              11 235899999999999


Q ss_pred             EEe
Q 026023          241 CTL  243 (244)
Q Consensus       241 vl~  243 (244)
                      +++
T Consensus       280 i~a  282 (435)
T 3gvp_A          280 ITC  282 (435)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            984

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=98.79  E-value=6.8e-09  Score=87.15  Aligned_cols=83  Identities=11%  Similarity=0.163  Sum_probs=51.8

Q ss_pred             CCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchH-------------HHHHHhhhhhhhh
Q 026023          149 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATR-------------LEKFVTAYGQFLK  215 (244)
Q Consensus       149 ~w~~~~~~~~~~~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~-------------~~~~~~~~~~~~~  215 (244)
                      .|.+|........++.+++|||||+|++|+.+|+.| ...|.+|.+|+|++...             .+++...      
T Consensus         3 ~~~~~~~~~~~~~~~~~~kIgiIG~G~mG~alA~~L-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~------   75 (245)
T 3dtt_A            3 SDKIHHHHHHENLYFQGMKIAVLGTGTVGRTMAGAL-ADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPE------   75 (245)
T ss_dssp             ----------------CCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHHHTCC-------CCHHHHGGG------
T ss_pred             cccccccccccccccCCCeEEEECCCHHHHHHHHHH-HHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhh------
Confidence            344444444456789999999999999999999998 78899999999986541             1111110      


Q ss_pred             cCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          216 ANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       216 ~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                            .+.....++.|++++||+|++++
T Consensus        76 ------~~~~~~~~~~e~~~~aDvVilav   98 (245)
T 3dtt_A           76 ------HPHVHLAAFADVAAGAELVVNAT   98 (245)
T ss_dssp             ------STTCEEEEHHHHHHHCSEEEECS
T ss_pred             ------cCceeccCHHHHHhcCCEEEEcc
Confidence                  11223468999999999999975

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=98.78  E-value=5.1e-07  Score=80.36  Aligned_cols=221  Identities=14%  Similarity=0.083  Sum_probs=117.6

Q ss_pred             CCCCeEEEEeCCCC--------chHHHHHHHhCCCeEEEeccC--CCCCCHHHHHHHhc---C--CccEEEeccCccccH
Q 026023           12 PNGKYRVVSTKPMP--------GTRWINLLIEQDCRVEICTQK--KTILSVEDIIALIG---D--KCDGVIGQLTEDWGE   76 (244)
Q Consensus        12 ~~~~~~ilv~~~~~--------~~~~~~~l~~~~~~v~~~~~~--~~~~~~~~~~~~~~---~--~ad~ii~~~~~~~~~   76 (244)
                      |-.+|+|-|.....        .+...+.|.+.|++|.+-...  ...+++++..++=.   +  .+|+|+.- . .+++
T Consensus        19 ~~~~m~IgvpkE~~~~E~RValtP~~v~~L~~~G~~V~VE~gaG~~~~f~D~~Y~~aGa~i~~~~~adiIlkV-k-~p~~   96 (381)
T 3p2y_A           19 PGSMTLIGVPRESAEGERRVALVPKVVEKLSARGLEVVVESAAGAGALFSDADYERAGATIGDPWPADVVVKV-N-PPTS   96 (381)
T ss_dssp             -CTTCEEEECCCCSTTCCCCSSCHHHHHHHHHTTCEEEECTTTTGGGTCCHHHHHHTTCEESCCTTSSEEECS-S-CCCH
T ss_pred             CCcceEEEEEecCCCCCceecCCHHHHHHHHhCCCEEEEeCCCCccCCCChHHHHHCCCEEeeeecCCEEEEe-C-CCCh
Confidence            55678887754221        123567787889998654332  23578888876421   1  15665543 2 2455


Q ss_pred             HHHHHhhccCCcEEEEcccCCCccChHHHhhCCcEEEecCCCC----CcchHHHHHHHHHHHHhChHHHHHHHHcCCCCC
Q 026023           77 TLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVL----TETTAELAASLSLAAARRIVEADEFMRAGLYDG  152 (244)
Q Consensus        77 ~~l~~~p~l~~k~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~----~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~  152 (244)
                      +.++.+++ |-.++.....-.|.=.++.+.++||....--...    ++++  -++.-+=.++-+..-......-+.   
T Consensus        97 ~e~~~l~~-g~~l~~~lh~~~~~~l~~~l~~~~it~ia~E~i~~~~~~~~l--~~l~~~s~iAGy~Av~~aa~~l~~---  170 (381)
T 3p2y_A           97 DEISQLKP-GSVLIGFLAPRTQPELASRLRIADVTAFAMESIPRISRAQTM--DALSSQANVAGYKAVLLGASLSTR---  170 (381)
T ss_dssp             HHHTTSCT-TCEEEECCCTTTCHHHHHHHHHTTCEEEEGGGCCSSGGGGGG--CHHHHHHHHHHHHHHHHHHHHCSS---
T ss_pred             hHHhhccC-CCEEEEEeccccCHHHHHHHHHCCCeEEEeeccccccccccc--eeecchhHHHHHHHHHHHHHHhhh---
Confidence            55666665 3244444444344334577788999886443332    1221  111111111111111111111111   


Q ss_pred             CCCCcc-cccccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcC-----CCCCc----
Q 026023          153 WLPNLF-VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-----GEQPV----  222 (244)
Q Consensus       153 ~~~~~~-~~~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~----  222 (244)
                      ..+... ....+.+++|+|+|+|.||...|+.+ ++||++|+++|+++... +. .+.+|...-..     +....    
T Consensus       171 ~~~~l~~~~~~v~~~kV~ViG~G~iG~~aa~~a-~~lGa~V~v~D~~~~~l-~~-~~~lGa~~~~l~~~~~~~~gya~~~  247 (381)
T 3p2y_A          171 FVPMLTTAAGTVKPASALVLGVGVAGLQALATA-KRLGAKTTGYDVRPEVA-EQ-VRSVGAQWLDLGIDAAGEGGYAREL  247 (381)
T ss_dssp             CSSCEECSSCEECCCEEEEESCSHHHHHHHHHH-HHHTCEEEEECSSGGGH-HH-HHHTTCEECCCC-------------
T ss_pred             hhhhhhcccCCcCCCEEEEECchHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HH-HHHcCCeEEeccccccccccchhhh
Confidence            111111 12467999999999999999999996 99999999999997541 11 11122110000     00000    


Q ss_pred             ----cccccCCHHHHhhhCCEEEEe
Q 026023          223 ----TWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       223 ----~~~~~~~l~ell~~sD~Vvl~  243 (244)
                          ......++.+.+++||+|+.+
T Consensus       248 ~~~~~~~~~~~l~e~l~~aDIVI~t  272 (381)
T 3p2y_A          248 SEAERAQQQQALEDAITKFDIVITT  272 (381)
T ss_dssp             CHHHHHHHHHHHHHHHTTCSEEEEC
T ss_pred             hHHHHhhhHHHHHHHHhcCCEEEEC
Confidence                001123688999999999875

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=98.65  E-value=1.9e-08  Score=85.32  Aligned_cols=154  Identities=19%  Similarity=0.161  Sum_probs=98.2

Q ss_pred             HHHhCCCeEEEeccCCCCCCHHHHHHHhcC---CccEEEeccCccccHHHHHHhhccCCcEEEEcccCCCccChHHHhhC
Q 026023           32 LLIEQDCRVEICTQKKTILSVEDIIALIGD---KCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKY  108 (244)
Q Consensus        32 ~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~aG~d~id~~~~~~~  108 (244)
                      .+++.|.+..+....   .+++++.+.+..   .+.++.+  +.++.++++..++++  .-+.....|+|.++.    +.
T Consensus        23 ~~~~~g~~~~y~~~~---~~~~~l~~~i~~l~~~~~G~~v--t~P~k~~i~~~~~~l--~~~a~~~gavn~i~~----~~   91 (263)
T 2d5c_A           23 ALESLGLEGSYEAWD---TPLEALPGRLKEVRRAFRGVNL--TLPLKEAALAHLDWV--SPEAQRIGAVNTVLQ----VE   91 (263)
T ss_dssp             HHHHTTCCEEEEEEE---CCGGGHHHHHHHHHHHCSEEEE--CTTCTTGGGGGCSEE--CHHHHHHTCCCEEEE----ET
T ss_pred             HHHHcCCCCEEEEEe---CCHHHHHHHHHhccccCceEEE--cccCHHHHHHHHHHH--hHHHHHhCCCCcEEc----cC
Confidence            456677777665432   345566655542   1333333  346677777777777  666777788888865    23


Q ss_pred             CcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHhccC
Q 026023          109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF  188 (244)
Q Consensus       109 gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~IG~~vA~~la~af  188 (244)
                      |    +..++|+..     .+++.++.|.                      +.++.| +++|+|+|.+|+.+++.| ..+
T Consensus        92 g----~~~g~ntd~-----~g~~~~l~~~----------------------~~~l~~-~v~iiG~G~~g~~~a~~l-~~~  138 (263)
T 2d5c_A           92 G----RLFGFNTDA-----PGFLEALKAG----------------------GIPLKG-PALVLGAGGAGRAVAFAL-REA  138 (263)
T ss_dssp             T----EEEEECCHH-----HHHHHHHHHT----------------------TCCCCS-CEEEECCSHHHHHHHHHH-HHT
T ss_pred             C----eEEEeCCCH-----HHHHHHHHHh----------------------CCCCCC-eEEEECCcHHHHHHHHHH-HHC
Confidence            4    223444433     2444443321                      125788 999999999999999998 789


Q ss_pred             CcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          189 KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       189 G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      |++|.+++|++.. .++..+.++       .     . .++++++ +++|+|++++
T Consensus       139 g~~v~v~~r~~~~-~~~l~~~~~-------~-----~-~~~~~~~-~~~Divi~~t  179 (263)
T 2d5c_A          139 GLEVWVWNRTPQR-ALALAEEFG-------L-----R-AVPLEKA-REARLLVNAT  179 (263)
T ss_dssp             TCCEEEECSSHHH-HHHHHHHHT-------C-----E-ECCGGGG-GGCSEEEECS
T ss_pred             CCEEEEEECCHHH-HHHHHHHhc-------c-----c-hhhHhhc-cCCCEEEEcc
Confidence            9999999998643 233222221       1     1 3578888 9999999875

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=98.62  E-value=3.6e-08  Score=84.24  Aligned_cols=158  Identities=14%  Similarity=0.141  Sum_probs=95.3

Q ss_pred             HHHHhCCCeEEEeccCCCCCCHHHHHHHhcC----CccEEEeccCccccHHHHHHhhccCCcEEEEcccCCCccChHHHh
Q 026023           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD----KCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAAN  106 (244)
Q Consensus        31 ~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~----~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~aG~d~id~~~~~  106 (244)
                      ..+++.|.+..+....   .+++++.+.+..    +++++.+.  .++.++++..++.+  .-......++|.+..    
T Consensus        33 ~~~~~~g~~~~y~~~~---~~~~~l~~~i~~l~~~~~~G~nvt--iP~k~~i~~~ld~l--~~~A~~~gavnti~~----  101 (275)
T 2hk9_A           33 ALIRYAGLNAVYLAFE---INPEELKKAFEGFKALKVKGINVT--VPFKEEIIPLLDYV--EDTAKEIGAVNTVKF----  101 (275)
T ss_dssp             HHHHHHTCSEEEEEEE---CCGGGHHHHHHHHHHHTCCEEEEC--TTSTTTTGGGCSEE--CHHHHHHTCCCEEEE----
T ss_pred             HHHHHcCCCcEEEEEE---CCHHHHHHHHHHHHhCCCCEEEEC--ccCHHHHHHHHHHh--hHHHHHhCCcceEEe----
Confidence            3456667766655442   244555554432    36676654  34556666666555  444455556665543    


Q ss_pred             hCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHhc
Q 026023          107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE  186 (244)
Q Consensus       107 ~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~IG~~vA~~la~  186 (244)
                      +.|-    ..|+|+...     +++.++.+          .+            .++.|++++|+|.|.+|+.+++.| .
T Consensus       102 ~~g~----~~g~nTd~~-----G~~~~l~~----------~~------------~~~~~~~v~iiGaG~~g~aia~~L-~  149 (275)
T 2hk9_A          102 ENGK----AYGYNTDWI-----GFLKSLKS----------LI------------PEVKEKSILVLGAGGASRAVIYAL-V  149 (275)
T ss_dssp             ETTE----EEEECCHHH-----HHHHHHHH----------HC------------TTGGGSEEEEECCSHHHHHHHHHH-H
T ss_pred             eCCE----EEeecCCHH-----HHHHHHHH----------hC------------CCcCCCEEEEECchHHHHHHHHHH-H
Confidence            2341    223444322     44444322          11            247889999999999999999998 7


Q ss_pred             cCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          187 GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       187 afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      ..|++|.+++|++.. .++..+.+            +.....++.++++++|+|++++
T Consensus       150 ~~g~~V~v~~r~~~~-~~~l~~~~------------g~~~~~~~~~~~~~aDiVi~at  194 (275)
T 2hk9_A          150 KEGAKVFLWNRTKEK-AIKLAQKF------------PLEVVNSPEEVIDKVQVIVNTT  194 (275)
T ss_dssp             HHTCEEEEECSSHHH-HHHHTTTS------------CEEECSCGGGTGGGCSEEEECS
T ss_pred             HcCCEEEEEECCHHH-HHHHHHHc------------CCeeehhHHhhhcCCCEEEEeC
Confidence            889999999998643 22211111            1222347889999999999874

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=98.61  E-value=5.9e-08  Score=85.76  Aligned_cols=66  Identities=26%  Similarity=0.307  Sum_probs=51.1

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh-hCCEE
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVV  240 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~sD~V  240 (244)
                      ++.||||+|.|+|+||+.+|++| +.|||+|+++|+++..  .++.+.+            +.. ..++++++. +||++
T Consensus       172 ~L~GktV~I~G~GnVG~~~A~~l-~~~GakVvvsD~~~~~--~~~a~~~------------ga~-~v~~~ell~~~~DIl  235 (355)
T 1c1d_A          172 SLDGLTVLVQGLGAVGGSLASLA-AEAGAQLLVADTDTER--VAHAVAL------------GHT-AVALEDVLSTPCDVF  235 (355)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHH--HHHHHHT------------TCE-ECCGGGGGGCCCSEE
T ss_pred             CCCCCEEEEECcCHHHHHHHHHH-HHCCCEEEEEeCCccH--HHHHHhc------------CCE-EeChHHhhcCcccee
Confidence            68999999999999999999997 9999999999987543  2222222            122 236788888 99998


Q ss_pred             EEe
Q 026023          241 CTL  243 (244)
Q Consensus       241 vl~  243 (244)
                      +-+
T Consensus       236 iP~  238 (355)
T 1c1d_A          236 APC  238 (355)
T ss_dssp             EEC
T ss_pred             cHh
Confidence            754

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=98.54  E-value=1.4e-07  Score=81.85  Aligned_cols=88  Identities=18%  Similarity=0.136  Sum_probs=50.3

Q ss_pred             HHHHHcCCCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCc-chHHHHHHhhhhhhhhcCCC
Q 026023          142 DEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ-ATRLEKFVTAYGQFLKANGE  219 (244)
Q Consensus       142 ~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~-~~~~~~~~~~~~~~~~~~~~  219 (244)
                      ++..+.+.|.+|.+.. .......++|||||+|.+|..+|+.| ...|. +|.+|||++ .+..+. ...          
T Consensus         2 ~~~~~~~~~~~~~~~~-~~~~~~~~~I~iIG~G~mG~~~A~~L-~~~G~~~V~~~dr~~~~~~~~~-~~~----------   68 (312)
T 3qsg_A            2 HHHHHHSSGVDLGTEN-LYFQSNAMKLGFIGFGEAASAIASGL-RQAGAIDMAAYDAASAESWRPR-AEE----------   68 (312)
T ss_dssp             ------------------------CEEEEECCSHHHHHHHHHH-HHHSCCEEEEECSSCHHHHHHH-HHH----------
T ss_pred             CcccccccccccCccc-ccccCCCCEEEEECccHHHHHHHHHH-HHCCCCeEEEEcCCCCHHHHHH-HHH----------
Confidence            4556777776554332 23344567999999999999999998 67899 999999974 232222 111          


Q ss_pred             CCccccccCCHHHHhhhCCEEEEeC
Q 026023          220 QPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       220 ~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                        .+.....++.+++++||+|++++
T Consensus        69 --~g~~~~~~~~e~~~~aDvVi~~v   91 (312)
T 3qsg_A           69 --LGVSCKASVAEVAGECDVIFSLV   91 (312)
T ss_dssp             --TTCEECSCHHHHHHHCSEEEECS
T ss_pred             --CCCEEeCCHHHHHhcCCEEEEec
Confidence              12234568999999999999975

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=98.53  E-value=2.4e-07  Score=80.27  Aligned_cols=71  Identities=15%  Similarity=0.165  Sum_probs=53.6

Q ss_pred             cccccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCC
Q 026023          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (244)
Q Consensus       159 ~~~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (244)
                      ......-++|||||+|.+|..+|+.| ...|.+|.+|||++... ++.. .            .+.....++.+++++||
T Consensus        15 ~~~~~~m~~I~iIG~G~mG~~~A~~l-~~~G~~V~~~dr~~~~~-~~l~-~------------~g~~~~~~~~~~~~~aD   79 (310)
T 3doj_A           15 VPRGSHMMEVGFLGLGIMGKAMSMNL-LKNGFKVTVWNRTLSKC-DELV-E------------HGASVCESPAEVIKKCK   79 (310)
T ss_dssp             ---CCCSCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSGGGG-HHHH-H------------TTCEECSSHHHHHHHCS
T ss_pred             CcccccCCEEEEECccHHHHHHHHHH-HHCCCeEEEEeCCHHHH-HHHH-H------------CCCeEcCCHHHHHHhCC
Confidence            34455668999999999999999998 78899999999987542 2211 1            12234578999999999


Q ss_pred             EEEEeC
Q 026023          239 VVCTLC  244 (244)
Q Consensus       239 ~Vvl~~  244 (244)
                      +|++++
T Consensus        80 vvi~~v   85 (310)
T 3doj_A           80 YTIAML   85 (310)
T ss_dssp             EEEECC
T ss_pred             EEEEEc
Confidence            999875

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=98.50  E-value=2.1e-07  Score=80.25  Aligned_cols=71  Identities=17%  Similarity=0.197  Sum_probs=48.3

Q ss_pred             hHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhc
Q 026023          138 IVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA  216 (244)
Q Consensus       138 ~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~  216 (244)
                      +..+..+++++.|+...+        ..++||||| +|.||+.+|+.| +..|.+|.+++|++..               
T Consensus         2 ~~~~~~~~~~~~~~~~~~--------~~~~I~iIGg~G~mG~~la~~l-~~~G~~V~~~~~~~~~---------------   57 (298)
T 2pv7_A            2 MRESYANENQFGFKTINS--------DIHKIVIVGGYGKLGGLFARYL-RASGYPISILDREDWA---------------   57 (298)
T ss_dssp             -----------CCCCSCT--------TCCCEEEETTTSHHHHHHHHHH-HTTTCCEEEECTTCGG---------------
T ss_pred             hhhHHhhhhccCccccCC--------CCCEEEEEcCCCHHHHHHHHHH-HhCCCeEEEEECCccc---------------
Confidence            345667788888864211        246899999 999999999998 7999999999987532               


Q ss_pred             CCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          217 NGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       217 ~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                                  ++.+.+++||+|++++
T Consensus        58 ------------~~~~~~~~aDvVilav   73 (298)
T 2pv7_A           58 ------------VAESILANADVVIVSV   73 (298)
T ss_dssp             ------------GHHHHHTTCSEEEECS
T ss_pred             ------------CHHHHhcCCCEEEEeC
Confidence                        4677888999999875

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=98.45  E-value=4e-07  Score=83.34  Aligned_cols=67  Identities=21%  Similarity=0.370  Sum_probs=52.3

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      ..+.||+++|+|+|.||+.+|++| +++|++|+++++++....+. ..        .+      ....+++++++.+|+|
T Consensus       261 ~~L~GKtVvVtGaGgIG~aiA~~L-aa~GA~Viv~D~~~~~a~~A-a~--------~g------~dv~~lee~~~~aDvV  324 (488)
T 3ond_A          261 VMIAGKVAVVAGYGDVGKGCAAAL-KQAGARVIVTEIDPICALQA-TM--------EG------LQVLTLEDVVSEADIF  324 (488)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHH-HH--------TT------CEECCGGGTTTTCSEE
T ss_pred             CcccCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCHHHHHHH-HH--------hC------CccCCHHHHHHhcCEE
Confidence            458999999999999999999998 89999999999987542111 10        01      1235789999999998


Q ss_pred             EEe
Q 026023          241 CTL  243 (244)
Q Consensus       241 vl~  243 (244)
                      +.+
T Consensus       325 i~a  327 (488)
T 3ond_A          325 VTT  327 (488)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            864

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=98.42  E-value=8.3e-06  Score=73.11  Aligned_cols=165  Identities=12%  Similarity=0.031  Sum_probs=91.2

Q ss_pred             HHHHHHHhCCCeEEEeccC--CCCCCHHHHHHHhc--------CCccEEEeccCccccHHHHHHhhccCCcEEEEcccCC
Q 026023           28 RWINLLIEQDCRVEICTQK--KTILSVEDIIALIG--------DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGY   97 (244)
Q Consensus        28 ~~~~~l~~~~~~v~~~~~~--~~~~~~~~~~~~~~--------~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~aG~   97 (244)
                      ...+.|.+.|++|.+-...  ...+++++..++=.        ..+|+|+.-.  .++++.++.+++ |-.++...-..-
T Consensus        46 ~~v~~L~~~G~~V~VE~gaG~~~~f~D~~Y~~aGa~i~~~~~~~~adiIlkVk--~p~~~e~~~l~~-g~~l~~~lh~~~  122 (405)
T 4dio_A           46 ESVKKLKSLGFDVVVEAGAGLGSRIPDQEYEKAGARVGTAADAKTADVILKVR--RPSAQEISGYRS-GAVVIAIMDPYG  122 (405)
T ss_dssp             HHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEECGGGGGGCSEEEEEE--CCCTTTGGGSCT-TCEEEEECCCTT
T ss_pred             HHHHHHHhCCCEEEEeCCCCccCCCCHHHHHHcCCEEchHHhhccCCEEEEeC--CCChhHHhhcCC-CcEEEEEecccc
Confidence            3467787789998654432  23567777765311        0367666421  123333455544 324554444433


Q ss_pred             CccChHHHhhCCcEEEecCCCC----CcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCccc-ccccCCCEEEEEc
Q 026023           98 NNVDVNAANKYGIAVGNTPGVL----TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFV-GNLLKGQTVGVIG  172 (244)
Q Consensus        98 d~id~~~~~~~gI~v~n~~~~~----~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~-~~~l~g~tvgIvG  172 (244)
                      |.-.++.+.++||...---...    ++++-  +++-+=.++-+..-......-+.   ..+.... ...+.+.+|+|+|
T Consensus       123 ~~~l~~~l~~~~it~ia~E~i~r~~ra~~l~--~ls~~s~iAGy~Av~~aa~~l~~---~~~~l~t~~g~v~~~kV~ViG  197 (405)
T 4dio_A          123 NEEAISAMAGAGLTTFAMELMPRITRAQSMD--VLSSQANLAGYQAVIDAAYEYDR---ALPMMMTAAGTVPAAKIFVMG  197 (405)
T ss_dssp             CHHHHHHHHHTTCEEEEGGGSCCSGGGGGGC--HHHHHHHHHHHHHHHHHHHHCSS---CSSCEEETTEEECCCEEEEEC
T ss_pred             CHHHHHHHHHCCCeEEEeeccccccccCccc--eecchhHHHHHHHHHHHHHHhHh---hhchhhccCCCcCCCEEEEEC
Confidence            4334577788999886443322    12211  11111111111111111111111   1111111 2357999999999


Q ss_pred             CChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          173 AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       173 ~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +|.||...|+.+ +++|++|+++|+++..
T Consensus       198 ~G~iG~~aa~~a-~~lGa~V~v~D~~~~~  225 (405)
T 4dio_A          198 AGVAGLQAIATA-RRLGAVVSATDVRPAA  225 (405)
T ss_dssp             CSHHHHHHHHHH-HHTTCEEEEECSSTTH
T ss_pred             CcHHHHHHHHHH-HHCCCEEEEEcCCHHH
Confidence            999999999996 9999999999999754

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.42  E-value=4.6e-07  Score=69.50  Aligned_cols=68  Identities=16%  Similarity=0.283  Sum_probs=53.0

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      |++++|+|.|.+|+.+++.| +.+|++|..++|++.. .+++.+.++          .......+++++++++|+|+.++
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l-~~~g~~v~v~~r~~~~-~~~~a~~~~----------~~~~~~~~~~~~~~~~Divi~at   88 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYF-SYPQYKVTVAGRNIDH-VRAFAEKYE----------YEYVLINDIDSLIKNNDVIITAT   88 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGC-CTTTCEEEEEESCHHH-HHHHHHHHT----------CEEEECSCHHHHHHTCSEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHH-HhCCCEEEEEcCCHHH-HHHHHHHhC----------CceEeecCHHHHhcCCCEEEEeC
Confidence            88999999999999999998 7899999999998754 233333331          12234578999999999999763

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=98.33  E-value=7.1e-07  Score=78.41  Aligned_cols=69  Identities=26%  Similarity=0.328  Sum_probs=53.3

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      ..+.+++|||||+|.||+.+|+.| +..|++|+++++++....+. ...+       +     .... ++++++++||+|
T Consensus        12 ~~l~~~~I~IIG~G~mG~alA~~L-~~~G~~V~~~~~~~~~~~~~-a~~~-------G-----~~~~-~~~e~~~~aDvV   76 (338)
T 1np3_A           12 SIIQGKKVAIIGYGSQGHAHACNL-KDSGVDVTVGLRSGSATVAK-AEAH-------G-----LKVA-DVKTAVAAADVV   76 (338)
T ss_dssp             HHHHTSCEEEECCSHHHHHHHHHH-HHTTCCEEEECCTTCHHHHH-HHHT-------T-----CEEE-CHHHHHHTCSEE
T ss_pred             chhcCCEEEEECchHHHHHHHHHH-HHCcCEEEEEECChHHHHHH-HHHC-------C-----CEEc-cHHHHHhcCCEE
Confidence            457889999999999999999998 78999999999987542221 1111       1     1122 789999999999


Q ss_pred             EEeC
Q 026023          241 CTLC  244 (244)
Q Consensus       241 vl~~  244 (244)
                      ++++
T Consensus        77 ilav   80 (338)
T 1np3_A           77 MILT   80 (338)
T ss_dssp             EECS
T ss_pred             EEeC
Confidence            9985

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=98.32  E-value=7.6e-07  Score=78.98  Aligned_cols=128  Identities=20%  Similarity=0.214  Sum_probs=77.2

Q ss_pred             hhccCCcEEEEcccCCCccChHHHhhCCcEEEecC------CCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCC
Q 026023           82 LSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTP------GVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP  155 (244)
Q Consensus        82 ~p~l~~k~I~~~~aG~d~id~~~~~~~gI~v~n~~------~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~  155 (244)
                      +..|..+.|-..-.|.+.-++.++.+.==.++--+      ....++++-.+...+..+++..        -|       
T Consensus       103 ~~~l~g~~i~A~D~Gt~~~~m~~l~~~~~~~tGK~~~~ggs~~~~~aTg~GV~~~~~~~~~~~--------~G-------  167 (364)
T 1leh_A          103 IQGLNGRYITAEDVGTTVDDMDLIHQETDYVTGISPAFGSSGNPSPVTAYGVYRGMKAAAKEA--------FG-------  167 (364)
T ss_dssp             HHTTTTSEEBCBCTTCCHHHHHHHHTTCSCBCSCCHHHHHHCCHHHHHHHHHHHHHHHHHHHH--------HS-------
T ss_pred             HHHhcCceEEcccCCCCHHHHHHHHHhcchhcccccccCCCCCcccchhhHHHHHHHHHHHhh--------cc-------
Confidence            44443367766666666555555554310122111      1112445555555555544431        01       


Q ss_pred             CcccccccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh
Q 026023          156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR  235 (244)
Q Consensus       156 ~~~~~~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~  235 (244)
                          ..+|.|+||+|+|+|++|+.+|++| ..+|++|+++|+++.. .+++.+.+|            . ...+.++++.
T Consensus       168 ----~~~L~GktV~V~G~G~VG~~~A~~L-~~~GakVvv~D~~~~~-l~~~a~~~g------------a-~~v~~~~ll~  228 (364)
T 1leh_A          168 ----SDSLEGLAVSVQGLGNVAKALCKKL-NTEGAKLVVTDVNKAA-VSAAVAEEG------------A-DAVAPNAIYG  228 (364)
T ss_dssp             ----SCCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHH-HHHHHHHHC------------C-EECCGGGTTT
T ss_pred             ----ccCCCcCEEEEECchHHHHHHHHHH-HHCCCEEEEEcCCHHH-HHHHHHHcC------------C-EEEChHHHhc
Confidence                1259999999999999999999998 8999999999987643 233333321            1 1235667776


Q ss_pred             -hCCEEEEe
Q 026023          236 -EADVVCTL  243 (244)
Q Consensus       236 -~sD~Vvl~  243 (244)
                       +||+++.|
T Consensus       229 ~~~DIvip~  237 (364)
T 1leh_A          229 VTCDIFAPC  237 (364)
T ss_dssp             CCCSEEEEC
T ss_pred             cCCcEeecc
Confidence             89999875

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=98.30  E-value=1.2e-06  Score=76.27  Aligned_cols=67  Identities=16%  Similarity=0.213  Sum_probs=52.9

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       163 l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      ...++|||||+|.+|+.+|+.| ...|.+|.+|||++... ++..+        .     +.....++++++++||+|++
T Consensus        29 ~~~~~I~iIG~G~mG~~~a~~l-~~~G~~V~~~dr~~~~~-~~l~~--------~-----g~~~~~~~~e~~~~aDvVi~   93 (320)
T 4dll_A           29 PYARKITFLGTGSMGLPMARRL-CEAGYALQVWNRTPARA-ASLAA--------L-----GATIHEQARAAARDADIVVS   93 (320)
T ss_dssp             CCCSEEEEECCTTTHHHHHHHH-HHTTCEEEEECSCHHHH-HHHHT--------T-----TCEEESSHHHHHTTCSEEEE
T ss_pred             cCCCEEEEECccHHHHHHHHHH-HhCCCeEEEEcCCHHHH-HHHHH--------C-----CCEeeCCHHHHHhcCCEEEE
Confidence            4567999999999999999998 78899999999987542 22111        1     23345799999999999999


Q ss_pred             eC
Q 026023          243 LC  244 (244)
Q Consensus       243 ~~  244 (244)
                      ++
T Consensus        94 ~v   95 (320)
T 4dll_A           94 ML   95 (320)
T ss_dssp             CC
T ss_pred             EC
Confidence            75

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=98.26  E-value=3.6e-07  Score=82.50  Aligned_cols=37  Identities=30%  Similarity=0.420  Sum_probs=33.8

Q ss_pred             cc-cCCCEEEEEcCChHHHHHHHHHhcc-CCcEEEEEcCC
Q 026023          161 NL-LKGQTVGVIGAGRIGSAYARMMVEG-FKMNLIYYDLY  198 (244)
Q Consensus       161 ~~-l~g~tvgIvG~G~IG~~vA~~la~a-fG~~V~~~~~~  198 (244)
                      .+ |.|+||||+|+|+||+.+|++| ++ |||+|++++++
T Consensus       207 ~~~l~gktvgI~G~G~VG~~vA~~l-~~~~G~kVv~~sD~  245 (419)
T 1gtm_A          207 WDTLKGKTIAIQGYGNAGYYLAKIM-SEDFGMKVVAVSDS  245 (419)
T ss_dssp             CSCSTTCEEEEECCSHHHHHHHHHH-HHTTCCEEEEEECS
T ss_pred             CcccCCCEEEEEcCCHHHHHHHHHH-HHhcCCEEEEEeCC
Confidence            45 9999999999999999999997 89 99999999644

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=98.25  E-value=1.2e-06  Score=75.86  Aligned_cols=68  Identities=15%  Similarity=0.139  Sum_probs=53.4

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC  241 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv  241 (244)
                      +...++|||||+|.+|+.+|+.| ...|.+|.+|||++... ++..+        .     +.....++.+++++||+|+
T Consensus         6 ~~~~~~IgiIG~G~mG~~~A~~l-~~~G~~V~~~dr~~~~~-~~~~~--------~-----g~~~~~~~~e~~~~aDvVi   70 (306)
T 3l6d_A            6 ESFEFDVSVIGLGAMGTIMAQVL-LKQGKRVAIWNRSPGKA-AALVA--------A-----GAHLCESVKAALSASPATI   70 (306)
T ss_dssp             CCCSCSEEEECCSHHHHHHHHHH-HHTTCCEEEECSSHHHH-HHHHH--------H-----TCEECSSHHHHHHHSSEEE
T ss_pred             ccCCCeEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHHH--------C-----CCeecCCHHHHHhcCCEEE
Confidence            45667999999999999999998 78999999999987542 22111        0     1234578999999999999


Q ss_pred             EeC
Q 026023          242 TLC  244 (244)
Q Consensus       242 l~~  244 (244)
                      +++
T Consensus        71 ~~v   73 (306)
T 3l6d_A           71 FVL   73 (306)
T ss_dssp             ECC
T ss_pred             EEe
Confidence            975

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=98.25  E-value=6.4e-07  Score=81.79  Aligned_cols=75  Identities=21%  Similarity=0.203  Sum_probs=51.1

Q ss_pred             ccccCC-CEEEEEcCChHHHHHHHHHhccC------CcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHH
Q 026023          160 GNLLKG-QTVGVIGAGRIGSAYARMMVEGF------KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE  232 (244)
Q Consensus       160 ~~~l~g-~tvgIvG~G~IG~~vA~~la~af------G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e  232 (244)
                      ...|.| ++|||||+|++|..+|+.| +..      |++|++..++.....+.. ..+       +.... .....++.|
T Consensus        48 ~~~L~GiKkIgIIGlGsMG~AmA~nL-r~s~~~~g~G~~ViVg~r~~sks~e~A-~e~-------G~~v~-d~ta~s~aE  117 (525)
T 3fr7_A           48 PEAFKGIKQIGVIGWGSQGPAQAQNL-RDSLAEAKSDIVVKIGLRKGSKSFDEA-RAA-------GFTEE-SGTLGDIWE  117 (525)
T ss_dssp             HHHTTTCSEEEEECCTTHHHHHHHHH-HHHHHHTTCCCEEEEEECTTCSCHHHH-HHT-------TCCTT-TTCEEEHHH
T ss_pred             hHHhcCCCEEEEEeEhHHHHHHHHHH-HhcccccCCCCEEEEEeCCchhhHHHH-HHC-------CCEEe-cCCCCCHHH
Confidence            356999 9999999999999999998 666      999886655432211111 111       11100 001247999


Q ss_pred             HhhhCCEEEEeC
Q 026023          233 VLREADVVCTLC  244 (244)
Q Consensus       233 ll~~sD~Vvl~~  244 (244)
                      ++++||+|++++
T Consensus       118 Aa~~ADVVILaV  129 (525)
T 3fr7_A          118 TVSGSDLVLLLI  129 (525)
T ss_dssp             HHHHCSEEEECS
T ss_pred             HHhcCCEEEECC
Confidence            999999999975

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=98.24  E-value=2.1e-06  Score=73.28  Aligned_cols=64  Identities=23%  Similarity=0.297  Sum_probs=51.0

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      ++|||||+|.+|+.+|+.| ...|.+|.+|||++... +...+        .     +.....++++++++||+|++++
T Consensus         2 ~~i~iIG~G~mG~~~a~~l-~~~G~~V~~~dr~~~~~-~~~~~--------~-----g~~~~~~~~~~~~~aDvvi~~v   65 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNL-VKAGCSVTIWNRSPEKA-EELAA--------L-----GAERAATPCEVVESCPVTFAML   65 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSGGGG-HHHHH--------T-----TCEECSSHHHHHHHCSEEEECC
T ss_pred             CEEEEEeecHHHHHHHHHH-HHCCCeEEEEcCCHHHH-HHHHH--------C-----CCeecCCHHHHHhcCCEEEEEc
Confidence            5899999999999999998 78899999999987642 22111        1     2334579999999999999875

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=98.15  E-value=1.7e-06  Score=75.30  Aligned_cols=70  Identities=20%  Similarity=0.246  Sum_probs=51.6

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCc--EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHH-HhhhCC
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE-VLREAD  238 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e-ll~~sD  238 (244)
                      ++..++|||||+|.||+.+|+.| +..|.  +|.+|||++... +. ....       +..   .....++++ ++++||
T Consensus        30 ~~~~~kI~IIG~G~mG~slA~~l-~~~G~~~~V~~~dr~~~~~-~~-a~~~-------G~~---~~~~~~~~~~~~~~aD   96 (314)
T 3ggo_A           30 SLSMQNVLIVGVGFMGGSFAKSL-RRSGFKGKIYGYDINPESI-SK-AVDL-------GII---DEGTTSIAKVEDFSPD   96 (314)
T ss_dssp             CCSCSEEEEESCSHHHHHHHHHH-HHTTCCSEEEEECSCHHHH-HH-HHHT-------TSC---SEEESCTTGGGGGCCS
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHH-HhCCCCCEEEEEECCHHHH-HH-HHHC-------CCc---chhcCCHHHHhhccCC
Confidence            34458999999999999999998 78999  999999987542 21 1111       110   012357888 899999


Q ss_pred             EEEEeC
Q 026023          239 VVCTLC  244 (244)
Q Consensus       239 ~Vvl~~  244 (244)
                      +|++++
T Consensus        97 vVilav  102 (314)
T 3ggo_A           97 FVMLSS  102 (314)
T ss_dssp             EEEECS
T ss_pred             EEEEeC
Confidence            999975

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=98.13  E-value=3.6e-06  Score=71.86  Aligned_cols=64  Identities=22%  Similarity=0.293  Sum_probs=50.3

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      ++|||+|+|.+|..+|+.| ...|.+|.+|||++... ++..+ .            +.....++.+++++||+|++++
T Consensus         2 ~~I~iiG~G~mG~~~a~~l-~~~G~~V~~~dr~~~~~-~~~~~-~------------g~~~~~~~~~~~~~advvi~~v   65 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANL-VRAGFDVTVWNRNPAKC-APLVA-L------------GARQASSPAEVCAACDITIAML   65 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHH-HHHTCCEEEECSSGGGG-HHHHH-H------------TCEECSCHHHHHHHCSEEEECC
T ss_pred             CeEEEEccCHHHHHHHHHH-HHCCCeEEEEcCCHHHH-HHHHH-C------------CCeecCCHHHHHHcCCEEEEEc
Confidence            4799999999999999998 68899999999997642 22111 0            1234569999999999999975

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=98.12  E-value=2.1e-05  Score=67.19  Aligned_cols=140  Identities=18%  Similarity=0.226  Sum_probs=90.0

Q ss_pred             HhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccH-HHHHHhhccCCcEEEEcccCCCccC---h
Q 026023           34 IEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVD---V  102 (244)
Q Consensus        34 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~-~~l~~~p~l~~k~I~~~~aG~d~id---~  102 (244)
                      ++.|++.+.+..++ ..+++|+.+.+..     .++++++..+  ..+++ .+++....-  |       =+|.+-   .
T Consensus        59 ~~~Gi~~~~~~lp~-~~s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p~--K-------DVDg~~~~N~  128 (285)
T 3p2o_A           59 EECGIKSLVYHLNE-NITQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISS--K-------DVDGFHPINV  128 (285)
T ss_dssp             HHHTCEEEEEEECT-TCCHHHHHHHHHHHHHCTTCCEEEECSCCCTTSCHHHHHHHSCGG--G-------CTTCCSHHHH
T ss_pred             HHcCCeEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEecCCCCCCcCHHHHHhhCCcc--c-------ccccCCHhhh
Confidence            44577776665543 3578888876621     5789988743  23444 455554332  3       223222   1


Q ss_pred             HHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHH
Q 026023          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (244)
Q Consensus       103 ~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA  181 (244)
                      -.+.. |     .++.+.+.++.-++.++=.                         .+.++.|+++.|+|.|. +|+.+|
T Consensus       129 g~l~~-g-----~~~g~~PcTp~gv~~lL~~-------------------------~~i~l~Gk~vvVvGrs~iVG~p~A  177 (285)
T 3p2o_A          129 GYLNL-G-----LESGFLPCTPLGVMKLLKA-------------------------YEIDLEGKDAVIIGASNIVGRPMA  177 (285)
T ss_dssp             HHHHT-T-----CCSSCCCHHHHHHHHHHHH-------------------------TTCCCTTCEEEEECCCTTTHHHHH
T ss_pred             hhhhc-C-----CCCCCCCCCHHHHHHHHHH-------------------------hCCCCCCCEEEEECCCchHHHHHH
Confidence            11111 1     2332456666665433221                         23569999999999998 599999


Q ss_pred             HHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       182 ~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      .+| ...|++|..++++.                            .+|.+.+++||+|+..
T Consensus       178 ~lL-~~~gAtVtv~h~~t----------------------------~~L~~~~~~ADIVI~A  210 (285)
T 3p2o_A          178 TML-LNAGATVSVCHIKT----------------------------KDLSLYTRQADLIIVA  210 (285)
T ss_dssp             HHH-HHTTCEEEEECTTC----------------------------SCHHHHHTTCSEEEEC
T ss_pred             HHH-HHCCCeEEEEeCCc----------------------------hhHHHHhhcCCEEEEC
Confidence            998 89999999998642                            4799999999999975

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=98.10  E-value=8.4e-05  Score=63.27  Aligned_cols=143  Identities=18%  Similarity=0.188  Sum_probs=92.1

Q ss_pred             HhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccHH-HHHHhhccCCcEEEEcccCCCccChHHH
Q 026023           34 IEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVNAA  105 (244)
Q Consensus        34 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~~-~l~~~p~l~~k~I~~~~aG~d~id~~~~  105 (244)
                      ++.|++.+.+..++ ..+++|+.+.+.+     .++++++..+  ..+++. +++.....  |       =+|.+.....
T Consensus        58 ~~~Gi~~~~~~lp~-~~s~~ell~~i~~lN~D~~v~GIlvqlPlP~~id~~~i~~~I~p~--K-------DVDG~~p~n~  127 (281)
T 2c2x_A           58 AKVGITSIRRDLPA-DISTATLNETIDELNANPDCTGYIVQLPLPKHLDENAALERVDPA--K-------DADGLHPTNL  127 (281)
T ss_dssp             HHHTCEEEEEEECT-TCCHHHHHHHHHHHHHCTTCCEEEECSCCCTTSCHHHHHHHSCGG--G-------BTTSCCHHHH
T ss_pred             HHcCCEEEEEECCC-CCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCCHHHHHhhcCcc--C-------CccCCChhhH
Confidence            44577776655544 3588888876632     5789998743  234443 44444333  3       3443332111


Q ss_pred             hhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCChH-HHHHHHHH
Q 026023          106 NKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI-GSAYARMM  184 (244)
Q Consensus       106 ~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~I-G~~vA~~l  184 (244)
                      .+   .+.+.+ .+...+++-++.++-.                         .+.++.|+++.|+|.|+| |+-+|++|
T Consensus       128 g~---l~~g~~-~~~PcTp~gi~~ll~~-------------------------~~i~l~gk~vvVvG~s~iVG~p~A~lL  178 (281)
T 2c2x_A          128 GR---LVLGTP-APLPCTPRGIVHLLRR-------------------------YDISIAGAHVVVIGRGVTVGRPLGLLL  178 (281)
T ss_dssp             HH---HHHTCC-CCCCHHHHHHHHHHHH-------------------------TTCCCTTCEEEEECCCTTTHHHHHHHH
T ss_pred             HH---HhCCCC-CCCCChHHHHHHHHHH-------------------------cCCCCCCCEEEEECCCcHHHHHHHHHH
Confidence            11   111112 4567777775444322                         134699999999999986 99999998


Q ss_pred             hccC--CcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          185 VEGF--KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       185 a~af--G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                       ...  |++|..++++.                            .+|.+.+++||+|+..+
T Consensus       179 -~~~g~~atVtv~h~~t----------------------------~~L~~~~~~ADIVI~Av  211 (281)
T 2c2x_A          179 -TRRSENATVTLCHTGT----------------------------RDLPALTRQADIVVAAV  211 (281)
T ss_dssp             -TSTTTCCEEEEECTTC----------------------------SCHHHHHTTCSEEEECS
T ss_pred             -hcCCCCCEEEEEECch----------------------------hHHHHHHhhCCEEEECC
Confidence             788  89999997642                            47999999999999753

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=98.10  E-value=2.9e-06  Score=74.66  Aligned_cols=64  Identities=13%  Similarity=0.283  Sum_probs=48.9

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhh----CCEEE
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE----ADVVC  241 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~----sD~Vv  241 (244)
                      ++|||||+|.||+.+|+.| +..|.+|.+||+++... +. ...+            +.....++++++++    ||+|+
T Consensus         9 ~kIgIIG~G~mG~slA~~L-~~~G~~V~~~dr~~~~~-~~-a~~~------------G~~~~~~~~e~~~~a~~~aDlVi   73 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDL-HAANHSVFGYNRSRSGA-KS-AVDE------------GFDVSADLEATLQRAAAEDALIV   73 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHH-HHTTCCEEEECSCHHHH-HH-HHHT------------TCCEESCHHHHHHHHHHTTCEEE
T ss_pred             CEEEEEeecHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HH-HHHc------------CCeeeCCHHHHHHhcccCCCEEE
Confidence            5799999999999999998 89999999999987542 21 1111            12234688888876    69999


Q ss_pred             EeC
Q 026023          242 TLC  244 (244)
Q Consensus       242 l~~  244 (244)
                      +++
T Consensus        74 lav   76 (341)
T 3ktd_A           74 LAV   76 (341)
T ss_dssp             ECS
T ss_pred             EeC
Confidence            985

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=97.37  E-value=4.3e-07  Score=74.05  Aligned_cols=65  Identities=14%  Similarity=0.179  Sum_probs=50.3

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       163 l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      +.+++|||+|+|++|+.+|+.| ...|.+|.+++|++..  +.+..             .+.. ..++.++++++|+|++
T Consensus        17 ~~~~~I~iIG~G~mG~~la~~L-~~~G~~V~~~~r~~~~--~~~~~-------------~g~~-~~~~~~~~~~aDvVil   79 (201)
T 2yjz_A           17 EKQGVVCIFGTGDFGKSLGLKM-LQCGYSVVFGSRNPQV--SSLLP-------------RGAE-VLCYSEAASRSDVIVL   79 (201)
Confidence            6788999999999999999998 7999999999998642  22110             0111 2378899999999998


Q ss_pred             eC
Q 026023          243 LC  244 (244)
Q Consensus       243 ~~  244 (244)
                      ++
T Consensus        80 av   81 (201)
T 2yjz_A           80 AV   81 (201)
Confidence            75

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.09  E-value=3e-05  Score=68.60  Aligned_cols=194  Identities=16%  Similarity=0.152  Sum_probs=105.3

Q ss_pred             HHHHHHhCCCeEEEeccCC--CCCCHHHHHHH----------hcCCccEEEeccCccccHHHHHHhhccCCcEEEEcccC
Q 026023           29 WINLLIEQDCRVEICTQKK--TILSVEDIIAL----------IGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVG   96 (244)
Q Consensus        29 ~~~~l~~~~~~v~~~~~~~--~~~~~~~~~~~----------~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~aG   96 (244)
                      ..+.|.+.|++|.+-...-  ..+++++..+.          .. ++|+|+.. ..+...+.....+  |...+.-....
T Consensus        22 ~v~~l~~~g~~v~ve~~ag~~~~f~d~~y~~aga~i~~~~~~~~-~ad~i~~v-ksP~~~~~~~~~~--g~~~~~y~~~~   97 (361)
T 1pjc_A           22 SVRTLVEAGHTVFIETQAGIGAGFADQDYVQAGAQVVPSAKDAW-SREMVVKV-KEPLPAEYDLMQK--DQLLFTYLHLA   97 (361)
T ss_dssp             HHHHHHTTTCEEEEETTTTGGGTCCHHHHHHHTCEEESSHHHHH-TSSEEECS-SCCCGGGGGGCCT--TCEEEECCCGG
T ss_pred             HHHHHHhCCCEEEEeCCCCccCCCCHHHHHHCCCEEECCHHHHh-cCCeEEEE-CCCCHHHHHhhcC--CCEEEEEeccc
Confidence            4677777888886533221  24566666532          11 38887754 2333322211122  32455555555


Q ss_pred             CCccChHHHhhCCcEEEec---CCCC-----CcchHHHHH--HHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCC
Q 026023           97 YNNVDVNAANKYGIAVGNT---PGVL-----TETTAELAA--SLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQ  166 (244)
Q Consensus        97 ~d~id~~~~~~~gI~v~n~---~~~~-----~~~vAE~~l--~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~  166 (244)
                      ++.-..+.+.+.|+...|.   |.-.     -.++++.+-  +.++... ++...    ..|.  +....  .-..+.++
T Consensus        98 ~~~~l~~~l~~~gi~~~~~etvp~k~~~~~~l~~~s~~Ag~~a~~~gA~-nt~~~----~~g~--G~~l~--~l~~l~~~  168 (361)
T 1pjc_A           98 AARELTEQLMRVGLTAIAYETVELPNRSLPLLTPMSIIAGRLSVQFGAR-FLERQ----QGGR--GVLLG--GVPGVKPG  168 (361)
T ss_dssp             GCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTHHHHHHHHHHHHHHHHH-HTSGG----GTSC--CCCTT--CBTTBCCC
T ss_pred             cCHHHHHHHHHcCCeEEEEeeeEcccCCccccCcchHHHHHHHHHHHHH-HHhhc----cCCC--ceecc--CCCCCCCC
Confidence            5554566777888888754   3211     244555444  3344332 22111    1111  11000  01247889


Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      +|+|+|.|.+|+.+++.+ +.+|++|+++||++... +...+.++..     .... .....++.+.++.+|+|+.+
T Consensus       169 ~VlViGaGgvG~~aa~~a-~~~Ga~V~v~dr~~~r~-~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~DvVI~~  237 (361)
T 1pjc_A          169 KVVILGGGVVGTEAAKMA-VGLGAQVQIFDINVERL-SYLETLFGSR-----VELL-YSNSAEIETAVAEADLLIGA  237 (361)
T ss_dssp             EEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHH-HHHHHHHGGG-----SEEE-ECCHHHHHHHHHTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHH-HhCCCEEEEEeCCHHHH-HHHHHhhCce-----eEee-eCCHHHHHHHHcCCCEEEEC
Confidence            999999999999999997 99999999999987531 2111111100     0000 00113577888899999865

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=98.08  E-value=7.2e-06  Score=72.58  Aligned_cols=67  Identities=22%  Similarity=0.357  Sum_probs=51.8

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhC---CE
Q 026023          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA---DV  239 (244)
Q Consensus       163 l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s---D~  239 (244)
                      +.+++|||||+|.+|+.+|+.| ...|.+|.+|||++... +++.+        .     +.....+++|+++.+   |+
T Consensus        20 m~~mkIgiIGlG~mG~~~A~~L-~~~G~~V~v~dr~~~~~-~~l~~--------~-----g~~~~~s~~e~~~~a~~~Dv   84 (358)
T 4e21_A           20 FQSMQIGMIGLGRMGADMVRRL-RKGGHECVVYDLNVNAV-QALER--------E-----GIAGARSIEEFCAKLVKPRV   84 (358)
T ss_dssp             --CCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHH-HHHHT--------T-----TCBCCSSHHHHHHHSCSSCE
T ss_pred             hcCCEEEEECchHHHHHHHHHH-HhCCCEEEEEeCCHHHH-HHHHH--------C-----CCEEeCCHHHHHhcCCCCCE
Confidence            5678999999999999999998 78999999999987542 22111        1     223456899999999   99


Q ss_pred             EEEeC
Q 026023          240 VCTLC  244 (244)
Q Consensus       240 Vvl~~  244 (244)
                      |++++
T Consensus        85 Vi~~v   89 (358)
T 4e21_A           85 VWLMV   89 (358)
T ss_dssp             EEECS
T ss_pred             EEEeC
Confidence            99875

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=98.08  E-value=7.9e-06  Score=70.60  Aligned_cols=64  Identities=25%  Similarity=0.347  Sum_probs=51.6

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      ++||+||+|..|..+|+.| ..-|.+|.+|||++... +++.+             .+....+++.|+.+.||+|++++
T Consensus         4 ~kIgfIGlG~MG~~mA~~L-~~~G~~v~v~dr~~~~~-~~l~~-------------~Ga~~a~s~~e~~~~~dvv~~~l   67 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNL-LKAGYLLNVFDLVQSAV-DGLVA-------------AGASAARSARDAVQGADVVISML   67 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHH-HHTTCEEEEECSSHHHH-HHHHH-------------TTCEECSSHHHHHTTCSEEEECC
T ss_pred             CEEEEeeehHHHHHHHHHH-HhCCCeEEEEcCCHHHH-HHHHH-------------cCCEEcCCHHHHHhcCCceeecC
Confidence            4899999999999999999 67899999999997652 33221             12345579999999999999875

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=98.07  E-value=4.4e-06  Score=72.65  Aligned_cols=89  Identities=21%  Similarity=0.157  Sum_probs=50.9

Q ss_pred             HHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHhccCC-cEEEEEcCCcc--hHHHHHHhhhhhhhh
Q 026023          139 VEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQA--TRLEKFVTAYGQFLK  215 (244)
Q Consensus       139 ~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~IG~~vA~~la~afG-~~V~~~~~~~~--~~~~~~~~~~~~~~~  215 (244)
                      ++|+.+.+-..|..   ..+. .+ -.++|||||+|.+|..+|+.| ...| .+|.+|||++.  +..++..+.+    .
T Consensus         3 ~~~~~~~~~~~~~~---~~~~-~~-M~m~IgvIG~G~mG~~lA~~L-~~~G~~~V~~~dr~~~~~~~~~~~~~~~----~   72 (317)
T 4ezb_A            3 HHHHHSSGVDLGTE---NLYF-QS-MMTTIAFIGFGEAAQSIAGGL-GGRNAARLAAYDLRFNDPAASGALRARA----A   72 (317)
T ss_dssp             ------------CC---CHHH-HT-SCCEEEEECCSHHHHHHHHHH-HTTTCSEEEEECGGGGCTTTHHHHHHHH----H
T ss_pred             cccccccccccCcc---cCcc-cc-cCCeEEEECccHHHHHHHHHH-HHcCCCeEEEEeCCCccccchHHHHHHH----H
Confidence            35566666676643   2111 11 136899999999999999998 7899 99999999863  1111111110    0


Q ss_pred             cCCCCCccccccC-CHHHHhhhCCEEEEeC
Q 026023          216 ANGEQPVTWKRAS-SMDEVLREADVVCTLC  244 (244)
Q Consensus       216 ~~~~~~~~~~~~~-~l~ell~~sD~Vvl~~  244 (244)
                      ..+     .  .. ++.+++++||+|++++
T Consensus        73 ~~g-----~--~~~s~~e~~~~aDvVi~av   95 (317)
T 4ezb_A           73 ELG-----V--EPLDDVAGIACADVVLSLV   95 (317)
T ss_dssp             HTT-----C--EEESSGGGGGGCSEEEECC
T ss_pred             HCC-----C--CCCCHHHHHhcCCEEEEec
Confidence            111     1  35 7889999999999975

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=98.07  E-value=1.3e-05  Score=67.24  Aligned_cols=65  Identities=18%  Similarity=0.252  Sum_probs=50.0

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      .+|||+|+|.+|+.+++.| ...|.+|.+++|++.. .+...+.+|            .....+++++++++|+|++++
T Consensus         4 m~i~iiG~G~mG~~~a~~l-~~~g~~v~~~~~~~~~-~~~~~~~~g------------~~~~~~~~~~~~~~D~Vi~~v   68 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGL-KQTPHELIISGSSLER-SKEIAEQLA------------LPYAMSHQDLIDQVDLVILGI   68 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHH-TTSSCEEEEECSSHHH-HHHHHHHHT------------CCBCSSHHHHHHTCSEEEECS
T ss_pred             cEEEEECCCHHHHHHHHHH-HhCCCeEEEECCCHHH-HHHHHHHcC------------CEeeCCHHHHHhcCCEEEEEe
Confidence            4799999999999999998 7889999999998654 222222221            223468999999999999875

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=98.07  E-value=3.5e-06  Score=72.68  Aligned_cols=64  Identities=11%  Similarity=0.266  Sum_probs=46.3

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      ++||+||+|..|..+|+.| ..-|.+|.+|||++... +++             ...+....+++.|+++.||+|++++
T Consensus         6 ~kIgfIGLG~MG~~mA~~L-~~~G~~V~v~dr~~~~~-~~l-------------~~~G~~~~~s~~e~~~~~dvvi~~l   69 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEIL-LEAGYELVVWNRTASKA-EPL-------------TKLGATVVENAIDAITPGGIVFSVL   69 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHH-HHTTCEEEEC--------CTT-------------TTTTCEECSSGGGGCCTTCEEEECC
T ss_pred             CcEEEEecHHHHHHHHHHH-HHCCCeEEEEeCCHHHH-HHH-------------HHcCCeEeCCHHHHHhcCCceeeec
Confidence            5799999999999999999 68899999999987652 111             1223445679999999999999875

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=98.06  E-value=6.9e-06  Score=68.58  Aligned_cols=65  Identities=26%  Similarity=0.400  Sum_probs=50.4

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCc----EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKM----NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC  241 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~----~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv  241 (244)
                      ++|||||+|++|+.+++.| ..-|.    +|.+|||++.. .+...+.+            +.....++.+++++||+|+
T Consensus         3 ~~i~iIG~G~mG~~~a~~l-~~~g~~~~~~V~~~~r~~~~-~~~~~~~~------------g~~~~~~~~e~~~~aDvVi   68 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGM-INKNIVSSNQIICSDLNTAN-LKNASEKY------------GLTTTTDNNEVAKNADILI   68 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHH-HHTTSSCGGGEEEECSCHHH-HHHHHHHH------------CCEECSCHHHHHHHCSEEE
T ss_pred             CeEEEECccHHHHHHHHHH-HhCCCCCCCeEEEEeCCHHH-HHHHHHHh------------CCEEeCChHHHHHhCCEEE
Confidence            4799999999999999998 68887    99999998754 22222222            1234568999999999999


Q ss_pred             EeC
Q 026023          242 TLC  244 (244)
Q Consensus       242 l~~  244 (244)
                      +++
T Consensus        69 lav   71 (247)
T 3gt0_A           69 LSI   71 (247)
T ss_dssp             ECS
T ss_pred             EEe
Confidence            875

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=98.05  E-value=0.00013  Score=62.34  Aligned_cols=140  Identities=21%  Similarity=0.246  Sum_probs=89.3

Q ss_pred             HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccH-HHHHHhhccCCcEEEEcccCCCccC---
Q 026023           33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVD---  101 (244)
Q Consensus        33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~-~~l~~~p~l~~k~I~~~~aG~d~id---  101 (244)
                      .++.|++.+.+..++ ..+++|+.+.+..     .++++++..+  ..+++ .+++....-  |       =+|.+-   
T Consensus        60 ~~~~Gi~~~~~~lp~-~~s~~ell~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~I~p~--K-------DVDG~~~~N  129 (286)
T 4a5o_A           60 CEEVGFLSQAYDLPA-ETSQDDLLALIDRLNDDPAIDGILVQLPLPAHLDASLLLERIHPD--K-------DVDGFHPYN  129 (286)
T ss_dssp             HHHTTCEEEEEEECT-TCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHTSCGG--G-------CTTCCSHHH
T ss_pred             HHHcCCeEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCcCHHHHHhhCCcc--c-------ccccCChhh
Confidence            355687776665544 3578888876422     4789988643  23444 344443222  2       223222   


Q ss_pred             hHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHH
Q 026023          102 VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAY  180 (244)
Q Consensus       102 ~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~v  180 (244)
                      .-.+.. |     .+ .+.+.++.-++.+ |.   +                     .+.++.|+++.|+|.|. +|+.+
T Consensus       130 ~g~l~~-g-----~~-~~~PcTp~gv~~l-L~---~---------------------~~i~l~Gk~vvVvGrs~iVG~pl  177 (286)
T 4a5o_A          130 IGRLAQ-R-----MP-LLRPCTPKGIMTL-LA---S---------------------TGADLYGMDAVVVGASNIVGRPM  177 (286)
T ss_dssp             HHHHHT-T-----CC-SSCCHHHHHHHHH-HH---H---------------------TTCCCTTCEEEEECTTSTTHHHH
T ss_pred             hHHHhc-C-----CC-CCCCCCHHHHHHH-HH---H---------------------hCCCCCCCEEEEECCCchhHHHH
Confidence            111111 2     12 3455666665443 32   1                     23569999999999998 79999


Q ss_pred             HHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       181 A~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      |.+| ...|++|..+.++.                            .+|++.+++||+|+..
T Consensus       178 A~lL-~~~gAtVtv~hs~T----------------------------~~L~~~~~~ADIVI~A  211 (286)
T 4a5o_A          178 ALEL-LLGGCTVTVTHRFT----------------------------RDLADHVSRADLVVVA  211 (286)
T ss_dssp             HHHH-HHTTCEEEEECTTC----------------------------SCHHHHHHTCSEEEEC
T ss_pred             HHHH-HHCCCeEEEEeCCC----------------------------cCHHHHhccCCEEEEC
Confidence            9998 89999999987642                            3799999999999875

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=98.04  E-value=8.3e-05  Score=63.89  Aligned_cols=144  Identities=12%  Similarity=0.188  Sum_probs=90.3

Q ss_pred             HhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccCc--c--ccHH-HHHHhhccCCcEEEEcccCCCccChH
Q 026023           34 IEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLTE--D--WGET-LFAALSRAGGKAFSNMAVGYNNVDVN  103 (244)
Q Consensus        34 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~~--~--~~~~-~l~~~p~l~~k~I~~~~aG~d~id~~  103 (244)
                      ++.|++...+..++ ..+++|+.+.+..     .+++|++..+.  .  +++. +++.....  |       -+|.+...
T Consensus        61 ~~~Gi~~~~~~lp~-~~s~~ell~~I~~lN~D~~V~GIlvqlPLP~~~~id~~~i~~~I~p~--K-------DVDG~hp~  130 (301)
T 1a4i_A           61 EEIGIKATHIKLPR-TTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPE--K-------DVDGLTSI  130 (301)
T ss_dssp             HHHTCEEEEEEECT-TCCHHHHHHHHHHHHHCTTCCEEEECSSCCCSSCCCHHHHHHTSCGG--G-------BTTCCSHH
T ss_pred             HHcCCEEEEEECCC-CCCHHHHHHHHHHhcCCCCCcEEEEeccCCCCCccCHHHHHhccCCC--C-------CccCCChh
Confidence            44577776655444 3578888765532     57899987532  3  4444 44444322  3       34443322


Q ss_pred             HHhhCCcEEEec-CCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHH
Q 026023          104 AANKYGIAVGNT-PGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (244)
Q Consensus       104 ~~~~~gI~v~n~-~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA  181 (244)
                      ...+   .+.+. ...+...+++-++. +|.   +                     .+.++.|+++.|+|.|+ +|+.+|
T Consensus       131 N~G~---l~~g~~~~~~~PcTp~gi~~-ll~---~---------------------~~i~l~gk~vvVIG~s~iVG~p~A  182 (301)
T 1a4i_A          131 NAGR---LARGDLNDCFIPCTPKGCLE-LIK---E---------------------TGVPIAGRHAVVVGRSKIVGAPMH  182 (301)
T ss_dssp             HHHH---HHTTCCSSCCCCHHHHHHHH-HHH---T---------------------TTCCCTTCEEEEECCCTTTHHHHH
T ss_pred             hHHH---HhcCCCCCCccCchHHHHHH-HHH---H---------------------cCCCCCCCEEEEECCCchHHHHHH
Confidence            1111   00111 12355667766333 333   1                     23579999999999997 699999


Q ss_pred             HHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       182 ~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      ++| ...|++|..++++.                            .+|.+.+++||+|+..+
T Consensus       183 ~lL-~~~gAtVtv~hs~t----------------------------~~L~~~~~~ADIVI~Av  216 (301)
T 1a4i_A          183 DLL-LWNNATVTTCHSKT----------------------------AHLDEEVNKGDILVVAT  216 (301)
T ss_dssp             HHH-HHTTCEEEEECTTC----------------------------SSHHHHHTTCSEEEECC
T ss_pred             HHH-HhCCCeEEEEECCc----------------------------ccHHHHhccCCEEEECC
Confidence            998 89999999997542                            47999999999999753

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=98.04  E-value=4e-05  Score=65.41  Aligned_cols=143  Identities=13%  Similarity=0.219  Sum_probs=89.5

Q ss_pred             HhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccH-HHHHHhhccCCcEEEEcccCCCccChHHH
Q 026023           34 IEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNAA  105 (244)
Q Consensus        34 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~-~~l~~~p~l~~k~I~~~~aG~d~id~~~~  105 (244)
                      ++.|++...+..++ ..+++|+.+.+..     .++++++..+  ..+++ .+++....-  |=+    =|+-.++.-.+
T Consensus        60 ~~~Gi~~~~~~lp~-~~s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p~--KDV----DG~~~~N~G~l  132 (285)
T 3l07_A           60 AQVGIDSQVITLPE-HTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPE--KDV----DGFHPTNVGRL  132 (285)
T ss_dssp             HHHTCEEEEEEECT-TCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHHSCGG--GBT----TCCSHHHHHHH
T ss_pred             HHcCCeEEEEECCC-CCCHHHHHHHHHHHhCCCCCcEEEEcCCCCCCcCHHHHHhhCCcc--ccc----ccCChhheeeh
Confidence            44577776665543 3578888776521     4789988753  23444 444544332  322    01111122112


Q ss_pred             hhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHHHH
Q 026023          106 NKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARMM  184 (244)
Q Consensus       106 ~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~~l  184 (244)
                      .. |     ....+.+.++.-++.++=.                         .+.++.|+++.|+|.|. +|+.+|.+|
T Consensus       133 ~~-g-----~~~~~~PcTp~gv~~lL~~-------------------------~~i~l~Gk~vvVIG~s~iVG~p~A~lL  181 (285)
T 3l07_A          133 QL-R-----DKKCLESCTPKGIMTMLRE-------------------------YGIKTEGAYAVVVGASNVVGKPVSQLL  181 (285)
T ss_dssp             HH-T-----CTTCCCCHHHHHHHHHHHH-------------------------TTCCCTTCEEEEECCCTTTHHHHHHHH
T ss_pred             hc-C-----CCCCCCCCCHHHHHHHHHH-------------------------hCCCCCCCEEEEECCCchhHHHHHHHH
Confidence            11 1     1023456666665543221                         23469999999999998 699999998


Q ss_pred             hccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          185 VEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       185 a~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                       ...|++|..++++.                            .+|.+.+++||+|+..
T Consensus       182 -~~~gAtVtv~hs~t----------------------------~~L~~~~~~ADIVI~A  211 (285)
T 3l07_A          182 -LNAKATVTTCHRFT----------------------------TDLKSHTTKADILIVA  211 (285)
T ss_dssp             -HHTTCEEEEECTTC----------------------------SSHHHHHTTCSEEEEC
T ss_pred             -HHCCCeEEEEeCCc----------------------------hhHHHhcccCCEEEEC
Confidence             89999999987642                            3799999999999975

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=98.03  E-value=5.7e-06  Score=71.08  Aligned_cols=63  Identities=22%  Similarity=0.322  Sum_probs=49.7

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      ++|||||+|.+|+.+|+.| ...|.+|.+|||++... ++..+        .     +.....+++++++ ||+|++++
T Consensus        16 ~~I~vIG~G~mG~~~A~~l-~~~G~~V~~~dr~~~~~-~~~~~--------~-----g~~~~~~~~~~~~-aDvvi~~v   78 (296)
T 3qha_A           16 LKLGYIGLGNMGAPMATRM-TEWPGGVTVYDIRIEAM-TPLAE--------A-----GATLADSVADVAA-ADLIHITV   78 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHH-TTSTTCEEEECSSTTTS-HHHHH--------T-----TCEECSSHHHHTT-SSEEEECC
T ss_pred             CeEEEECcCHHHHHHHHHH-HHCCCeEEEEeCCHHHH-HHHHH--------C-----CCEEcCCHHHHHh-CCEEEEEC
Confidence            5899999999999999998 78899999999987642 22111        1     2234568999999 99999875

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=98.02  E-value=4.2e-06  Score=72.08  Aligned_cols=65  Identities=22%  Similarity=0.210  Sum_probs=50.3

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccc-cCCHHHHhhhCCEEEEe
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLREADVVCTL  243 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ell~~sD~Vvl~  243 (244)
                      .++|||||+|.+|..+|+.| ...|.+|.+|||++... +...+        .     +... ..++.|++++||+|+++
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l-~~~G~~V~~~dr~~~~~-~~~~~--------~-----g~~~~~~~~~e~~~~aDvvi~~   71 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSC-LRAGLSTWGADLNPQAC-ANLLA--------E-----GACGAAASAREFAGVVDALVIL   71 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHH-HHHHH--------T-----TCSEEESSSTTTTTTCSEEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHH-HHCCCeEEEEECCHHHH-HHHHH--------c-----CCccccCCHHHHHhcCCEEEEE
Confidence            46899999999999999998 78899999999987542 22111        1     1122 46889999999999987


Q ss_pred             C
Q 026023          244 C  244 (244)
Q Consensus       244 ~  244 (244)
                      +
T Consensus        72 v   72 (303)
T 3g0o_A           72 V   72 (303)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=98.02  E-value=4.1e-06  Score=71.15  Aligned_cols=66  Identities=21%  Similarity=0.316  Sum_probs=48.4

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCc--EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh-hCCEEEE
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVVCT  242 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~sD~Vvl  242 (244)
                      ++|||||+|.+|+.+|+.| ...|.  +|++++|++... +. ...+       +..   .....++++.++ +||+|++
T Consensus         2 ~~I~iIG~G~mG~~~a~~l-~~~g~~~~V~~~d~~~~~~-~~-~~~~-------g~~---~~~~~~~~~~~~~~aDvVil   68 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSL-RRSGFKGKIYGYDINPESI-SK-AVDL-------GII---DEGTTSIAKVEDFSPDFVML   68 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHH-HHTTCCSEEEEECSCHHHH-HH-HHHT-------TSC---SEEESCGGGGGGTCCSEEEE
T ss_pred             cEEEEEecCHHHHHHHHHH-HhcCCCcEEEEEeCCHHHH-HH-HHHC-------CCc---ccccCCHHHHhcCCCCEEEE
Confidence            4799999999999999998 78888  999999986542 21 1111       110   012357888999 9999999


Q ss_pred             eC
Q 026023          243 LC  244 (244)
Q Consensus       243 ~~  244 (244)
                      ++
T Consensus        69 av   70 (281)
T 2g5c_A           69 SS   70 (281)
T ss_dssp             CS
T ss_pred             cC
Confidence            85

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=98.01  E-value=7.6e-06  Score=69.84  Aligned_cols=63  Identities=29%  Similarity=0.435  Sum_probs=48.9

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +|||+|+|.+|+.+|+.| ...|.+|.+++|++... +...        ..     +.....+++++++++|+|++++
T Consensus         2 ~i~iiG~G~mG~~~a~~l-~~~g~~V~~~~~~~~~~-~~~~--------~~-----g~~~~~~~~~~~~~~Dvvi~~v   64 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNL-MKHGYPLIIYDVFPDAC-KEFQ--------DA-----GEQVVSSPADVAEKADRIITML   64 (296)
T ss_dssp             CEEEECCSTTHHHHHHHH-HHTTCCEEEECSSTHHH-HHHH--------TT-----TCEECSSHHHHHHHCSEEEECC
T ss_pred             eEEEEeccHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHH--------Hc-----CCeecCCHHHHHhcCCEEEEeC
Confidence            699999999999999998 68899999999986542 2211        01     1223468999999999999975

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=97.98  E-value=4.3e-06  Score=70.43  Aligned_cols=69  Identities=13%  Similarity=0.178  Sum_probs=51.5

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCcE-EEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      ++.+.+|||+|+|++|+.+|+.| ...|.+ |.+++|++.. .+...+.+            +.....+++++++++|+|
T Consensus         7 ~~~~m~i~iiG~G~mG~~~a~~l-~~~g~~~v~~~~~~~~~-~~~~~~~~------------g~~~~~~~~~~~~~~Dvv   72 (266)
T 3d1l_A            7 SIEDTPIVLIGAGNLATNLAKAL-YRKGFRIVQVYSRTEES-ARELAQKV------------EAEYTTDLAEVNPYAKLY   72 (266)
T ss_dssp             CGGGCCEEEECCSHHHHHHHHHH-HHHTCCEEEEECSSHHH-HHHHHHHT------------TCEEESCGGGSCSCCSEE
T ss_pred             CCCCCeEEEEcCCHHHHHHHHHH-HHCCCeEEEEEeCCHHH-HHHHHHHc------------CCceeCCHHHHhcCCCEE
Confidence            45567899999999999999998 677998 8999998654 22222211            122346888999999999


Q ss_pred             EEeC
Q 026023          241 CTLC  244 (244)
Q Consensus       241 vl~~  244 (244)
                      ++++
T Consensus        73 i~av   76 (266)
T 3d1l_A           73 IVSL   76 (266)
T ss_dssp             EECC
T ss_pred             EEec
Confidence            9875

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=97.98  E-value=5.9e-05  Score=64.80  Aligned_cols=142  Identities=22%  Similarity=0.252  Sum_probs=88.8

Q ss_pred             HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccHH-HHHHhhccCCcEEEEcccCCCccC---
Q 026023           33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVD---  101 (244)
Q Consensus        33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~~-~l~~~p~l~~k~I~~~~aG~d~id---  101 (244)
                      .++.|++.+.+..++ ..+++|+.+.+..     .++++++..+  ..++++ +++....-  |       =+|.+-   
T Consensus        62 ~~~~Gi~~~~~~lp~-~~s~~ell~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~I~p~--K-------DVDG~~~~N  131 (300)
T 4a26_A           62 AAEVGMASFNVELPE-DISQEVLEVNVEKLNNDPNCHGIIVQLPLPKHLNENRAIEKIHPH--K-------DADALLPVN  131 (300)
T ss_dssp             HHHTTCEEEEEEECT-TCCHHHHHHHHHHHHTCTTCCEEEECSCCCTTSCHHHHHHTSCGG--G-------CTTCCSHHH
T ss_pred             HHHcCCeEEEEECCC-CCCHHHHHHHHHHhcCCCCCCEEEEcCCCCCCCCHHHHHhhCCcc--c-------ccccCCcce
Confidence            355687776665544 3588888876522     4789988743  234443 44443222  2       223222   


Q ss_pred             hHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHH
Q 026023          102 VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAY  180 (244)
Q Consensus       102 ~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~v  180 (244)
                      .-.+...+    ..+ .+.+.+++-++.+ |.   +                     .+.++.|+++.|+|.|. +|+.+
T Consensus       132 ~G~l~~g~----~~~-~~~PcTp~gv~~l-L~---~---------------------~~i~l~Gk~vvVIG~s~iVG~p~  181 (300)
T 4a26_A          132 VGLLHYKG----REP-PFTPCTAKGVIVL-LK---R---------------------CGIEMAGKRAVVLGRSNIVGAPV  181 (300)
T ss_dssp             HHHHHCTT----CCC-SCCCHHHHHHHHH-HH---H---------------------HTCCCTTCEEEEECCCTTTHHHH
T ss_pred             EEEeecCC----CcC-CCCCCCHHHHHHH-HH---H---------------------cCCCCCCCEEEEECCCchHHHHH
Confidence            11111110    012 3456666665543 22   1                     23469999999999998 69999


Q ss_pred             HHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHH--HHhhhCCEEEEe
Q 026023          181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD--EVLREADVVCTL  243 (244)
Q Consensus       181 A~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--ell~~sD~Vvl~  243 (244)
                      |.+| ...|++|..++++.+                            +|.  +.+++||+|+..
T Consensus       182 A~lL-~~~gAtVtv~~~~T~----------------------------~l~l~~~~~~ADIVI~A  217 (300)
T 4a26_A          182 AALL-MKENATVTIVHSGTS----------------------------TEDMIDYLRTADIVIAA  217 (300)
T ss_dssp             HHHH-HHTTCEEEEECTTSC----------------------------HHHHHHHHHTCSEEEEC
T ss_pred             HHHH-HHCCCeEEEEeCCCC----------------------------CchhhhhhccCCEEEEC
Confidence            9998 899999999987532                            456  999999999875

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=97.96  E-value=2.3e-05  Score=67.93  Aligned_cols=70  Identities=21%  Similarity=0.338  Sum_probs=52.1

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      .++++||||+|.+|+.+++.|++.+|. +|.+|+|++.. .+++.+.++       .   .+....+++++++++|+|++
T Consensus       134 ~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~-~~~l~~~~~-------~---~~~~~~~~~e~v~~aDiVi~  202 (312)
T 2i99_A          134 SSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKEN-AEKFADTVQ-------G---EVRVCSSVQEAVAGADVIIT  202 (312)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHH-HHHHHHHSS-------S---CCEECSSHHHHHTTCSEEEE
T ss_pred             CCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHH-HHHHHHHhh-------C---CeEEeCCHHHHHhcCCEEEE
Confidence            456899999999999999988555687 89999998754 233332221       0   12335689999999999998


Q ss_pred             eC
Q 026023          243 LC  244 (244)
Q Consensus       243 ~~  244 (244)
                      ++
T Consensus       203 at  204 (312)
T 2i99_A          203 VT  204 (312)
T ss_dssp             CC
T ss_pred             Ee
Confidence            74

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=97.94  E-value=1.6e-05  Score=67.97  Aligned_cols=64  Identities=22%  Similarity=0.299  Sum_probs=49.6

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      .+|||+|+|.+|+.+|+.| ...|.+|.+++|++... +...        ..     +.....+++++++++|+|++++
T Consensus         5 ~~i~iiG~G~~G~~~a~~l-~~~g~~V~~~~~~~~~~-~~~~--------~~-----g~~~~~~~~~~~~~~D~vi~~v   68 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINL-LKEGVTVYAFDLMEANV-AAVV--------AQ-----GAQACENNQKVAAASDIIFTSL   68 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHH-HHTTCEEEEECSSHHHH-HHHH--------TT-----TCEECSSHHHHHHHCSEEEECC
T ss_pred             CEEEEECccHHHHHHHHHH-HHCCCeEEEEeCCHHHH-HHHH--------HC-----CCeecCCHHHHHhCCCEEEEEC
Confidence            5899999999999999998 67899999999986542 2211        01     1223468999999999999975

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=97.94  E-value=9.6e-06  Score=69.22  Aligned_cols=77  Identities=18%  Similarity=0.269  Sum_probs=50.8

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhh----hhhcC-CCC-------CccccccCCHHHH
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ----FLKAN-GEQ-------PVTWKRASSMDEV  233 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~-------~~~~~~~~~l~el  233 (244)
                      ++|+|+|.|.+|..+|+.+ ...|.+|..+|+++... +...+.+..    ..... ...       ........++++.
T Consensus         5 ~kV~VIGaG~mG~~iA~~l-a~~G~~V~l~d~~~~~~-~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~   82 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQT-AFHGFAVTAYDINTDAL-DAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQA   82 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSHHHH-HHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHH
T ss_pred             CEEEEECCCHHHHHHHHHH-HhCCCeEEEEeCCHHHH-HHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHH
Confidence            6899999999999999998 68899999999987542 221111000    00000 000       0012234689999


Q ss_pred             hhhCCEEEEeC
Q 026023          234 LREADVVCTLC  244 (244)
Q Consensus       234 l~~sD~Vvl~~  244 (244)
                      +++||+|+.++
T Consensus        83 ~~~aDlVi~av   93 (283)
T 4e12_A           83 VKDADLVIEAV   93 (283)
T ss_dssp             TTTCSEEEECC
T ss_pred             hccCCEEEEec
Confidence            99999999874

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=97.93  E-value=1.6e-05  Score=67.78  Aligned_cols=66  Identities=14%  Similarity=0.094  Sum_probs=50.7

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCCc---EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFKM---NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC  241 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG~---~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv  241 (244)
                      .++|||||+|++|+.+++.| ..-|.   +|.++||++.. .++..+.|            +.....+..+.+++||+|+
T Consensus         3 ~~~I~iIG~G~mG~aia~~l-~~~g~~~~~V~v~dr~~~~-~~~l~~~~------------gi~~~~~~~~~~~~aDvVi   68 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGL-IANGYDPNRICVTNRSLDK-LDFFKEKC------------GVHTTQDNRQGALNADVVV   68 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHH-HHTTCCGGGEEEECSSSHH-HHHHHHTT------------CCEEESCHHHHHSSCSEEE
T ss_pred             CCEEEEEcccHHHHHHHHHH-HHCCCCCCeEEEEeCCHHH-HHHHHHHc------------CCEEeCChHHHHhcCCeEE
Confidence            36899999999999999998 67787   89999998754 23222211            2334568999999999999


Q ss_pred             EeC
Q 026023          242 TLC  244 (244)
Q Consensus       242 l~~  244 (244)
                      +++
T Consensus        69 lav   71 (280)
T 3tri_A           69 LAV   71 (280)
T ss_dssp             ECS
T ss_pred             EEe
Confidence            975

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=97.93  E-value=8.3e-06  Score=66.85  Aligned_cols=65  Identities=12%  Similarity=0.268  Sum_probs=48.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      .+++++|+|+|.+|+.+++.| ...|.+|.+++|++... +..        ...   ..  .. .+++++++++|+|+++
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l-~~~g~~V~~~~r~~~~~-~~~--------~~~---g~--~~-~~~~~~~~~~DvVi~a   90 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRL-VGSGFKVVVGSRNPKRT-ARL--------FPS---AA--QV-TFQEEAVSSPEVIFVA   90 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHH-HHTTCCEEEEESSHHHH-HHH--------SBT---TS--EE-EEHHHHTTSCSEEEEC
T ss_pred             CCCEEEEEccCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHH--------HHc---CC--ce-ecHHHHHhCCCEEEEC
Confidence            456899999999999999998 78899999999986431 211        111   11  11 2788999999999987


Q ss_pred             C
Q 026023          244 C  244 (244)
Q Consensus       244 ~  244 (244)
                      +
T Consensus        91 v   91 (215)
T 2vns_A           91 V   91 (215)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=97.90  E-value=2.4e-05  Score=67.49  Aligned_cols=64  Identities=14%  Similarity=0.258  Sum_probs=49.4

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      ++|||+|+|.+|+.+|+.| ...|.+|.+++|++... +... ..            +.....++.++++++|+|++++
T Consensus        31 ~~I~iIG~G~mG~~~a~~l-~~~g~~V~~~~~~~~~~-~~~~-~~------------g~~~~~~~~~~~~~~DvVi~av   94 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNL-LKMGHTVTVWNRTAEKC-DLFI-QE------------GARLGRTPAEVVSTCDITFACV   94 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHH-HHTTCCEEEECSSGGGG-HHHH-HT------------TCEECSCHHHHHHHCSEEEECC
T ss_pred             CeEEEEcccHHHHHHHHHH-HhCCCEEEEEeCCHHHH-HHHH-Hc------------CCEEcCCHHHHHhcCCEEEEeC
Confidence            6799999999999999998 68899999999986542 2211 11            1123458999999999999875

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=97.89  E-value=2.5e-05  Score=65.52  Aligned_cols=62  Identities=18%  Similarity=0.232  Sum_probs=45.7

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch-HHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT-RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +|||||+|++|+.+|+.| ...|.+|.++++...+ ..++.. ..       +     ..  .++++++++||+|++++
T Consensus         2 ~I~iIG~G~mG~~la~~l-~~~g~~V~~~~~~~~~~~~~~~~-~~-------g-----~~--~~~~~~~~~aDvvi~~v   64 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRL-RSRGVEVVTSLEGRSPSTIERAR-TV-------G-----VT--ETSEEDVYSCPVVISAV   64 (264)
T ss_dssp             EEEEESCSHHHHHHHHHH-HHTTCEEEECCTTCCHHHHHHHH-HH-------T-----CE--ECCHHHHHTSSEEEECS
T ss_pred             eEEEEechHHHHHHHHHH-HHCCCeEEEeCCccCHHHHHHHH-HC-------C-----Cc--CCHHHHHhcCCEEEEEC
Confidence            799999999999999998 6789999999883222 112211 11       1     11  57889999999999975

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=97.86  E-value=2.3e-05  Score=66.90  Aligned_cols=64  Identities=20%  Similarity=0.302  Sum_probs=49.5

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      .+|+|+|+|.+|+.+++.| ...|.+|.+++|++... +...+        .     +.....+++++++++|+|++++
T Consensus         6 m~i~iiG~G~~G~~~a~~l-~~~g~~V~~~~~~~~~~-~~~~~--------~-----g~~~~~~~~~~~~~~D~vi~~v   69 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNL-LKAGYSLVVSDRNPEAI-ADVIA--------A-----GAETASTAKAIAEQCDVIITML   69 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHH-HHTTCEEEEECSCHHHH-HHHHH--------T-----TCEECSSHHHHHHHCSEEEECC
T ss_pred             ceEEEECchHHHHHHHHHH-HhCCCEEEEEeCCHHHH-HHHHH--------C-----CCeecCCHHHHHhCCCEEEEEC
Confidence            3899999999999999998 67899999999986542 22111        1     1223468999999999999875

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=97.80  E-value=1.9e-05  Score=67.23  Aligned_cols=63  Identities=17%  Similarity=0.216  Sum_probs=47.9

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      .+|||+|+|.+|+.+|+.| ...|.+|.+++ ++... +...        ..     +.....+++++++++|+|++++
T Consensus         4 m~i~iiG~G~~G~~~a~~l-~~~g~~V~~~~-~~~~~-~~~~--------~~-----g~~~~~~~~~~~~~~D~vi~~v   66 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINL-ARAGHQLHVTT-IGPVA-DELL--------SL-----GAVNVETARQVTEFADIIFIMV   66 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHH-HHTTCEEEECC-SSCCC-HHHH--------TT-----TCBCCSSHHHHHHTCSEEEECC
T ss_pred             CEEEEEccCHHHHHHHHHH-HhCCCEEEEEc-CHHHH-HHHH--------Hc-----CCcccCCHHHHHhcCCEEEEEC
Confidence            4899999999999999998 67899999999 65431 2211        01     1223468999999999999875

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=97.80  E-value=1.1e-05  Score=68.86  Aligned_cols=67  Identities=18%  Similarity=0.186  Sum_probs=47.2

Q ss_pred             CEEEEEcCChHHHHHHHHHhc-cCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~-afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      ++|||||+|.+|+.+|+.|++ ++|.+|.++|+++... +.. ..+       +..   .....++++++++||+|++++
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~-~~~-~~~-------g~~---~~~~~~~~~~~~~aDvVilav   74 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSR-DIA-LER-------GIV---DEATADFKVFAALADVIILAV   74 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHH-HHH-HHT-------TSC---SEEESCTTTTGGGCSEEEECS
T ss_pred             ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHH-HHH-HHc-------CCc---ccccCCHHHhhcCCCEEEEcC
Confidence            589999999999999999833 2378999999986542 221 111       110   012357888899999999975

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=97.79  E-value=1.6e-05  Score=67.25  Aligned_cols=64  Identities=22%  Similarity=0.216  Sum_probs=47.1

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +|+|+|+|.+|+.+|+.| ...|.+|.+++|++... +. ...+       +..   .....+++++ +++|+|++++
T Consensus         2 ~i~iiG~G~~G~~~a~~l-~~~g~~V~~~~~~~~~~-~~-~~~~-------g~~---~~~~~~~~~~-~~~D~vi~av   65 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDL-RRRGHYLIGVSRQQSTC-EK-AVER-------QLV---DEAGQDLSLL-QTAKIIFLCT   65 (279)
T ss_dssp             EEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHH-HH-HHHT-------TSC---SEEESCGGGG-TTCSEEEECS
T ss_pred             EEEEEcCcHHHHHHHHHH-HHCCCEEEEEECCHHHH-HH-HHhC-------CCC---ccccCCHHHh-CCCCEEEEEC
Confidence            799999999999999998 78899999999986542 22 1111       110   0123578888 9999999875

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.78  E-value=7.4e-05  Score=57.68  Aligned_cols=40  Identities=20%  Similarity=0.313  Sum_probs=34.9

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ....++++.|+|+|.+|+.+++.| +..|.+|.++++++..
T Consensus        15 ~~~~~~~v~IiG~G~iG~~la~~L-~~~g~~V~vid~~~~~   54 (155)
T 2g1u_A           15 KKQKSKYIVIFGCGRLGSLIANLA-SSSGHSVVVVDKNEYA   54 (155)
T ss_dssp             --CCCCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCGGG
T ss_pred             cccCCCcEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHH
Confidence            457789999999999999999998 8999999999998654

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=97.76  E-value=3.1e-05  Score=64.81  Aligned_cols=58  Identities=29%  Similarity=0.468  Sum_probs=46.5

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCC----cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC  241 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG----~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv  241 (244)
                      .+|||||+|++|+.+|+.| ..-|    .+|.+|+|++..                    .+.....++.++++++|+|+
T Consensus         5 m~i~iiG~G~mG~~~a~~l-~~~g~~~~~~v~~~~~~~~~--------------------~g~~~~~~~~~~~~~~D~vi   63 (262)
T 2rcy_A            5 IKLGFMGLGQMGSALAHGI-ANANIIKKENLFYYGPSKKN--------------------TTLNYMSSNEELARHCDIIV   63 (262)
T ss_dssp             SCEEEECCSHHHHHHHHHH-HHHTSSCGGGEEEECSSCCS--------------------SSSEECSCHHHHHHHCSEEE
T ss_pred             CEEEEECcCHHHHHHHHHH-HHCCCCCCCeEEEEeCCccc--------------------CceEEeCCHHHHHhcCCEEE
Confidence            5799999999999999998 5667    689999998643                    11223457899999999999


Q ss_pred             EeC
Q 026023          242 TLC  244 (244)
Q Consensus       242 l~~  244 (244)
                      +++
T Consensus        64 ~~v   66 (262)
T 2rcy_A           64 CAV   66 (262)
T ss_dssp             ECS
T ss_pred             EEe
Confidence            875

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=97.76  E-value=2.7e-05  Score=63.51  Aligned_cols=38  Identities=21%  Similarity=0.401  Sum_probs=30.9

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~  199 (244)
                      .++.+++|+|+|+|++|+.+|+.| ...|.+|.+++|++
T Consensus        15 ~~~~~~~I~iiG~G~mG~~la~~l-~~~g~~V~~~~~~~   52 (209)
T 2raf_A           15 LYFQGMEITIFGKGNMGQAIGHNF-EIAGHEVTYYGSKD   52 (209)
T ss_dssp             -----CEEEEECCSHHHHHHHHHH-HHTTCEEEEECTTC
T ss_pred             cccCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCH
Confidence            458889999999999999999998 78899999999874

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=97.76  E-value=2.9e-05  Score=63.73  Aligned_cols=65  Identities=28%  Similarity=0.270  Sum_probs=47.1

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEE-EcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      .+|||+|+|++|+.+|+.| ...|.+|.+ ++|++.. .++..+.+|            .....+..+.++++|+|++++
T Consensus        24 mkI~IIG~G~mG~~la~~l-~~~g~~V~~v~~r~~~~-~~~l~~~~g------------~~~~~~~~~~~~~aDvVilav   89 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERF-TAAQIPAIIANSRGPAS-LSSVTDRFG------------ASVKAVELKDALQADVVILAV   89 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHH-HHTTCCEEEECTTCGGG-GHHHHHHHT------------TTEEECCHHHHTTSSEEEEES
T ss_pred             CEEEEECCCHHHHHHHHHH-HhCCCEEEEEECCCHHH-HHHHHHHhC------------CCcccChHHHHhcCCEEEEeC
Confidence            5899999999999999998 677999999 9998754 222222221            111234556689999999875

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=97.76  E-value=4.3e-05  Score=70.20  Aligned_cols=69  Identities=14%  Similarity=0.238  Sum_probs=50.5

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhh---CCEEEE
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVVCT  242 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---sD~Vvl  242 (244)
                      ++|||||+|.+|+.+|+.| ...|.+|.+|||++... +++.+        .+..........+++|+++.   +|+|++
T Consensus         5 ~kIgiIGlG~MG~~lA~~L-~~~G~~V~v~dr~~~~~-~~l~~--------~g~~g~~i~~~~s~~e~v~~l~~aDvVil   74 (484)
T 4gwg_A            5 ADIALIGLAVMGQNLILNM-NDHGFVVCAFNRTVSKV-DDFLA--------NEAKGTKVVGAQSLKEMVSKLKKPRRIIL   74 (484)
T ss_dssp             BSEEEECCSHHHHHHHHHH-HHTTCCEEEECSSTHHH-HHHHH--------TTTTTSSCEECSSHHHHHHTBCSSCEEEE
T ss_pred             CEEEEEChhHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHHh--------cccCCCceeccCCHHHHHhhccCCCEEEE
Confidence            5799999999999999998 78899999999997542 22211        11111122234689999884   999998


Q ss_pred             eC
Q 026023          243 LC  244 (244)
Q Consensus       243 ~~  244 (244)
                      ++
T Consensus        75 ~V   76 (484)
T 4gwg_A           75 LV   76 (484)
T ss_dssp             CS
T ss_pred             ec
Confidence            75

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=97.75  E-value=4.9e-05  Score=66.08  Aligned_cols=77  Identities=18%  Similarity=0.170  Sum_probs=52.9

Q ss_pred             cccccCCCEEEEEcCChH-HHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccc---c--CCHHH
Q 026023          159 VGNLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR---A--SSMDE  232 (244)
Q Consensus       159 ~~~~l~g~tvgIvG~G~I-G~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~l~e  232 (244)
                      .+.++.|+++.|+|.|++ |+.+|+.| ...|++|..++|+.....+.        .............   .  .+|++
T Consensus       171 ~g~~l~gk~vvVIG~G~iVG~~~A~~L-~~~gAtVtv~nR~~~~l~~r--------a~~la~~~~~~t~~~~t~~~~L~e  241 (320)
T 1edz_A          171 EGNRLYGKKCIVINRSEIVGRPLAALL-ANDGATVYSVDVNNIQKFTR--------GESLKLNKHHVEDLGEYSEDLLKK  241 (320)
T ss_dssp             TTCTTTTCEEEEECCCTTTHHHHHHHH-HTTSCEEEEECSSEEEEEES--------CCCSSCCCCEEEEEEECCHHHHHH
T ss_pred             cCCCCCCCEEEEECCCcchHHHHHHHH-HHCCCEEEEEeCchHHHHhH--------HHHHhhhcccccccccccHhHHHH
Confidence            345799999999999986 99999998 89999999999974321110        0000000010100   1  57999


Q ss_pred             HhhhCCEEEEeC
Q 026023          233 VLREADVVCTLC  244 (244)
Q Consensus       233 ll~~sD~Vvl~~  244 (244)
                      .+++||+|+..+
T Consensus       242 ~l~~ADIVIsAt  253 (320)
T 1edz_A          242 CSLDSDVVITGV  253 (320)
T ss_dssp             HHHHCSEEEECC
T ss_pred             HhccCCEEEECC
Confidence            999999999763

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=97.73  E-value=4.5e-05  Score=64.95  Aligned_cols=63  Identities=25%  Similarity=0.439  Sum_probs=47.7

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       166 ~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      .+|||+|+ |++|+.+|+.| ...|.+|.+++|++... +.. ..+       +   +   ...++.+.+++||+|++++
T Consensus        12 m~I~iIG~tG~mG~~la~~l-~~~g~~V~~~~r~~~~~-~~~-~~~-------g---~---~~~~~~~~~~~aDvVi~av   75 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKI-HDSAHHLAAIEIAPEGR-DRL-QGM-------G---I---PLTDGDGWIDEADVVVLAL   75 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHSSSEEEEECCSHHHH-HHH-HHT-------T---C---CCCCSSGGGGTCSEEEECS
T ss_pred             CEEEEECCCCHHHHHHHHHH-HhCCCEEEEEECCHHHH-HHH-Hhc-------C---C---CcCCHHHHhcCCCEEEEcC
Confidence            58999999 99999999998 78899999999986441 221 111       1   1   1136778899999999875

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=97.71  E-value=3.2e-05  Score=65.99  Aligned_cols=68  Identities=13%  Similarity=0.089  Sum_probs=51.4

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      ++.|++++|+|.|.+|+.++..| ...|+ +|..++|+.... ++            -...+.....+++.+.++++|+|
T Consensus       114 ~l~~k~vlvlGaGg~g~aia~~L-~~~G~~~v~v~~R~~~~a-~~------------la~~~~~~~~~~~~~~~~~aDiV  179 (277)
T 3don_A          114 GIEDAYILILGAGGASKGIANEL-YKIVRPTLTVANRTMSRF-NN------------WSLNINKINLSHAESHLDEFDII  179 (277)
T ss_dssp             TGGGCCEEEECCSHHHHHHHHHH-HTTCCSCCEEECSCGGGG-TT------------CCSCCEEECHHHHHHTGGGCSEE
T ss_pred             CcCCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEeCCHHHH-HH------------HHHhcccccHhhHHHHhcCCCEE
Confidence            47899999999999999999998 79999 899999997541 11            01112222345677888999999


Q ss_pred             EEe
Q 026023          241 CTL  243 (244)
Q Consensus       241 vl~  243 (244)
                      +.+
T Consensus       180 Ina  182 (277)
T 3don_A          180 INT  182 (277)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            875

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.69  E-value=1.5e-05  Score=63.18  Aligned_cols=40  Identities=15%  Similarity=0.122  Sum_probs=35.7

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccC-CcEEEEEcCCcch
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQAT  201 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~af-G~~V~~~~~~~~~  201 (244)
                      .++.+.+++|+|+|.+|+.+|+.| +.. |.+|.++++++..
T Consensus        35 ~~~~~~~v~IiG~G~~G~~~a~~L-~~~~g~~V~vid~~~~~   75 (183)
T 3c85_A           35 INPGHAQVLILGMGRIGTGAYDEL-RARYGKISLGIEIREEA   75 (183)
T ss_dssp             BCCTTCSEEEECCSHHHHHHHHHH-HHHHCSCEEEEESCHHH
T ss_pred             cCCCCCcEEEECCCHHHHHHHHHH-HhccCCeEEEEECCHHH
Confidence            457788999999999999999998 888 9999999998754

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=97.68  E-value=9.4e-05  Score=65.69  Aligned_cols=73  Identities=18%  Similarity=0.317  Sum_probs=50.1

Q ss_pred             ccccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (244)
Q Consensus       160 ~~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~  239 (244)
                      ...+.|+||||+|.|.+|+.+++.+ +.+|++|+++|+++........+       ..-  ...+...+.+.++++++|+
T Consensus         9 ~~~~~~k~IlIlG~G~~g~~la~aa-~~~G~~vi~~d~~~~~~~~~~ad-------~~~--~~~~~d~~~l~~~~~~~dv   78 (389)
T 3q2o_A            9 RIILPGKTIGIIGGGQLGRMMALAA-KEMGYKIAVLDPTKNSPCAQVAD-------IEI--VASYDDLKAIQHLAEISDV   78 (389)
T ss_dssp             CCCCTTSEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSTTCTTTTTCS-------EEE--ECCTTCHHHHHHHHHTCSE
T ss_pred             ccCCCCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEeCCCCCchHHhCC-------ceE--ecCcCCHHHHHHHHHhCCE
Confidence            3457999999999999999999996 99999999999876432111000       000  0011111237789999999


Q ss_pred             EEE
Q 026023          240 VCT  242 (244)
Q Consensus       240 Vvl  242 (244)
                      |+.
T Consensus        79 I~~   81 (389)
T 3q2o_A           79 VTY   81 (389)
T ss_dssp             EEE
T ss_pred             eee
Confidence            865

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=97.68  E-value=4.6e-05  Score=64.56  Aligned_cols=62  Identities=19%  Similarity=0.157  Sum_probs=45.4

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      ++|||+|+|.+|+.+|+.| .. |.+|.+++|++... +...+ .|            ..... ++++++++|+|++++
T Consensus         2 ~~i~iiG~G~~G~~~a~~l-~~-g~~V~~~~~~~~~~-~~~~~-~g------------~~~~~-~~~~~~~~D~vi~~v   63 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHL-AR-RFPTLVWNRTFEKA-LRHQE-EF------------GSEAV-PLERVAEARVIFTCL   63 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHH-HT-TSCEEEECSSTHHH-HHHHH-HH------------CCEEC-CGGGGGGCSEEEECC
T ss_pred             CeEEEEcccHHHHHHHHHH-hC-CCeEEEEeCCHHHH-HHHHH-CC------------CcccC-HHHHHhCCCEEEEeC
Confidence            3699999999999999998 57 99999999986542 22111 01            11123 677889999999875

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.67  E-value=4.2e-05  Score=55.52  Aligned_cols=72  Identities=21%  Similarity=0.246  Sum_probs=48.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCC-cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      .+++++|+|.|.||+.+++.| ...| .+|.+++|++... +... ..+.     ...........++.++++.+|+|+.
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l-~~~g~~~v~~~~r~~~~~-~~~~-~~~~-----~~~~~d~~~~~~~~~~~~~~d~vi~   75 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALL-KTSSNYSVTVADHDLAAL-AVLN-RMGV-----ATKQVDAKDEAGLAKALGGFDAVIS   75 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHH-HHCSSEEEEEEESCHHHH-HHHH-TTTC-----EEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred             CcCeEEEECCCHHHHHHHHHH-HhCCCceEEEEeCCHHHH-HHHH-hCCC-----cEEEecCCCHHHHHHHHcCCCEEEE
Confidence            457899999999999999998 7889 8999999986542 2111 0000     0001111222457788899999987


Q ss_pred             e
Q 026023          243 L  243 (244)
Q Consensus       243 ~  243 (244)
                      +
T Consensus        76 ~   76 (118)
T 3ic5_A           76 A   76 (118)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=97.66  E-value=8.5e-05  Score=64.47  Aligned_cols=68  Identities=18%  Similarity=0.237  Sum_probs=49.1

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhccCC----cEEEEEcCCcc-hHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhC
Q 026023          163 LKGQTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQA-TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (244)
Q Consensus       163 l~g~tvgIvG~G~IG~~vA~~la~afG----~~V~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s  237 (244)
                      ....+|||||+|++|..+|+.| ..-|    .+|.+++|++. +..+.. ..+            +.....+..+.+++|
T Consensus        20 ~~~mkI~iIG~G~mG~ala~~L-~~~G~~~~~~V~v~~r~~~~~~~~~l-~~~------------G~~~~~~~~e~~~~a   85 (322)
T 2izz_A           20 FQSMSVGFIGAGQLAFALAKGF-TAAGVLAAHKIMASSPDMDLATVSAL-RKM------------GVKLTPHNKETVQHS   85 (322)
T ss_dssp             --CCCEEEESCSHHHHHHHHHH-HHTTSSCGGGEEEECSCTTSHHHHHH-HHH------------TCEEESCHHHHHHHC
T ss_pred             cCCCEEEEECCCHHHHHHHHHH-HHCCCCCcceEEEECCCccHHHHHHH-HHc------------CCEEeCChHHHhccC
Confidence            3445799999999999999998 5677    78999999874 222221 111            122335788999999


Q ss_pred             CEEEEeC
Q 026023          238 DVVCTLC  244 (244)
Q Consensus       238 D~Vvl~~  244 (244)
                      |+|++++
T Consensus        86 DvVilav   92 (322)
T 2izz_A           86 DVLFLAV   92 (322)
T ss_dssp             SEEEECS
T ss_pred             CEEEEEe
Confidence            9999975

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=97.66  E-value=8.3e-05  Score=64.01  Aligned_cols=74  Identities=18%  Similarity=0.161  Sum_probs=52.3

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      ++.|++++|+|.|.+|+.++..| ...|+ +|..++|++.. .++..+.++       .........+++.+.+.++|+|
T Consensus       138 ~l~~~~vlVlGaGg~g~aia~~L-~~~G~~~V~v~nR~~~k-a~~la~~~~-------~~~~~~~~~~~~~~~~~~aDiv  208 (297)
T 2egg_A          138 TLDGKRILVIGAGGGARGIYFSL-LSTAAERIDMANRTVEK-AERLVREGD-------ERRSAYFSLAEAETRLAEYDII  208 (297)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HTTTCSEEEEECSSHHH-HHHHHHHSC-------SSSCCEECHHHHHHTGGGCSEE
T ss_pred             CCCCCEEEEECcHHHHHHHHHHH-HHCCCCEEEEEeCCHHH-HHHHHHHhh-------hccCceeeHHHHHhhhccCCEE
Confidence            47889999999999999999998 78998 99999998643 233322221       1000111223577788999999


Q ss_pred             EEeC
Q 026023          241 CTLC  244 (244)
Q Consensus       241 vl~~  244 (244)
                      +.++
T Consensus       209 In~t  212 (297)
T 2egg_A          209 INTT  212 (297)
T ss_dssp             EECS
T ss_pred             EECC
Confidence            9763

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=97.64  E-value=3.2e-05  Score=64.76  Aligned_cols=63  Identities=14%  Similarity=0.153  Sum_probs=46.1

Q ss_pred             EEEEEcCChHHHHHHHHHhccCC-cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +|||+|+|++|+.+|+.| ...| .+|.+++|++.. .+...+.+            +.....++.+++ ++|+|++++
T Consensus         2 ~i~iiG~G~mG~~~a~~l-~~~g~~~v~~~~r~~~~-~~~~~~~~------------g~~~~~~~~~~~-~~D~vi~~v   65 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGL-VKQGGYRIYIANRGAEK-RERLEKEL------------GVETSATLPELH-SDDVLILAV   65 (263)
T ss_dssp             EEEEECCSHHHHHHHHHH-HHHCSCEEEEECSSHHH-HHHHHHHT------------CCEEESSCCCCC-TTSEEEECS
T ss_pred             EEEEECchHHHHHHHHHH-HHCCCCeEEEECCCHHH-HHHHHHhc------------CCEEeCCHHHHh-cCCEEEEEe
Confidence            799999999999999998 6778 899999998644 22221111            122234667778 999999875

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=97.64  E-value=8.3e-05  Score=68.23  Aligned_cols=71  Identities=13%  Similarity=0.212  Sum_probs=51.5

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhh---CCE
Q 026023          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADV  239 (244)
Q Consensus       163 l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---sD~  239 (244)
                      ...++|||||+|.+|+.+|+.| ...|.+|.+|+|++... ++..+.+       ..  .+.....+++++++.   +|+
T Consensus        13 ~~~~~IgvIGlG~MG~~lA~~L-a~~G~~V~v~~r~~~~~-~~l~~~~-------~~--~gi~~~~s~~e~v~~l~~aDv   81 (480)
T 2zyd_A           13 MSKQQIGVVGMAVMGRNLALNI-ESRGYTVSIFNRSREKT-EEVIAEN-------PG--KKLVPYYTVKEFVESLETPRR   81 (480)
T ss_dssp             --CBSEEEECCSHHHHHHHHHH-HTTTCCEEEECSSHHHH-HHHHHHS-------TT--SCEEECSSHHHHHHTBCSSCE
T ss_pred             cCCCeEEEEccHHHHHHHHHHH-HhCCCeEEEEeCCHHHH-HHHHhhC-------CC--CCeEEeCCHHHHHhCCCCCCE
Confidence            5667899999999999999999 67899999999987542 2222111       00  123345689999987   999


Q ss_pred             EEEeC
Q 026023          240 VCTLC  244 (244)
Q Consensus       240 Vvl~~  244 (244)
                      |++++
T Consensus        82 Vil~V   86 (480)
T 2zyd_A           82 ILLMV   86 (480)
T ss_dssp             EEECS
T ss_pred             EEEEC
Confidence            99975

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=97.61  E-value=0.00015  Score=61.86  Aligned_cols=143  Identities=15%  Similarity=0.140  Sum_probs=89.0

Q ss_pred             HhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccHH-HHHHhhccCCcEEEEcccCCCccChHHH
Q 026023           34 IEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVNAA  105 (244)
Q Consensus        34 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~~-~l~~~p~l~~k~I~~~~aG~d~id~~~~  105 (244)
                      ++.|++...+..++ ..+++|+.+.+..     .++++++..+  ..+++. +++.....  |       =+|.+.....
T Consensus        59 ~~~Gi~~~~~~lp~-~~s~~ell~~I~~lN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~--K-------DVDG~~p~n~  128 (288)
T 1b0a_A           59 EEVGFVSRSYDLPE-TTSEAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPD--K-------DVDGFHPYNV  128 (288)
T ss_dssp             HHHTCEECCEEECT-TCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHTTSCTT--T-------CTTCCSHHHH
T ss_pred             HHcCCEEEEEECCC-CCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhccCCc--c-------CcccCCccch
Confidence            44476665444433 3588888776522     5789998753  234443 33333222  2       3343332211


Q ss_pred             hhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHHHH
Q 026023          106 NKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARMM  184 (244)
Q Consensus       106 ~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~~l  184 (244)
                      .+   .+.+.+ .+...+++-++.++=.                         .+.++.|+++.|+|.|+ +|+.+|++|
T Consensus       129 g~---l~~g~~-~~~PcTp~gi~~ll~~-------------------------~~i~l~gk~vvVIG~s~iVG~p~A~lL  179 (288)
T 1b0a_A          129 GR---LCQRAP-RLRPCTPRGIVTLLER-------------------------YNIDTFGLNAVVIGASNIVGRPMSMEL  179 (288)
T ss_dssp             HH---HHTTCC-SSCCHHHHHHHHHHHH-------------------------TTCCCTTCEEEEECCCTTTHHHHHHHH
T ss_pred             hH---HhCCCC-CCCCCcHHHHHHHHHH-------------------------cCCCCCCCEEEEECCChHHHHHHHHHH
Confidence            11   111112 4566777764433322                         23469999999999998 599999998


Q ss_pred             hccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          185 VEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       185 a~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                       ...|++|..++++.                            .+|.+.+++||+|+..+
T Consensus       180 -~~~gAtVtv~hs~t----------------------------~~L~~~~~~ADIVI~Av  210 (288)
T 1b0a_A          180 -LLAGCTTTVTHRFT----------------------------KNLRHHVENADLLIVAV  210 (288)
T ss_dssp             -HTTTCEEEEECSSC----------------------------SCHHHHHHHCSEEEECS
T ss_pred             -HHCCCeEEEEeCCc----------------------------hhHHHHhccCCEEEECC
Confidence             89999999997542                            47999999999999753

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=97.60  E-value=7.9e-05  Score=62.73  Aligned_cols=66  Identities=20%  Similarity=0.256  Sum_probs=50.6

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC  241 (244)
Q Consensus       163 l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv  241 (244)
                      +.| +++|+|.|..|+.++..| ...|+ +|..++|++.. .++.            ...++....+++.+.++++|+|+
T Consensus       107 ~~~-~vliiGaGg~a~ai~~~L-~~~G~~~I~v~nR~~~k-a~~l------------a~~~~~~~~~~~~~~~~~aDiVI  171 (253)
T 3u62_A          107 VKE-PVVVVGAGGAARAVIYAL-LQMGVKDIWVVNRTIER-AKAL------------DFPVKIFSLDQLDEVVKKAKSLF  171 (253)
T ss_dssp             CCS-SEEEECCSHHHHHHHHHH-HHTTCCCEEEEESCHHH-HHTC------------CSSCEEEEGGGHHHHHHTCSEEE
T ss_pred             CCC-eEEEECcHHHHHHHHHHH-HHcCCCEEEEEeCCHHH-HHHH------------HHHcccCCHHHHHhhhcCCCEEE
Confidence            578 999999999999999998 78999 89999998654 1221            11122234467889999999999


Q ss_pred             Ee
Q 026023          242 TL  243 (244)
Q Consensus       242 l~  243 (244)
                      .+
T Consensus       172 na  173 (253)
T 3u62_A          172 NT  173 (253)
T ss_dssp             EC
T ss_pred             EC
Confidence            75

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=97.59  E-value=0.00011  Score=63.25  Aligned_cols=70  Identities=20%  Similarity=0.273  Sum_probs=48.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCC-ccccccCCHHHHhhhCCEEEE
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-VTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      .-|+|||||+|.+|..+|..| . -|.+|.+||+++... +...+.+       .... -+.....++.+ +++||+|+.
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~l-a-aG~~V~v~d~~~~~~-~~~~~~l-------~~~~~~~i~~~~~~~~-~~~aDlVie   79 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAI-A-SKHEVVLQDVSEKAL-EAAREQI-------PEELLSKIEFTTTLEK-VKDCDIVME   79 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHH-H-TTSEEEEECSCHHHH-HHHHHHS-------CGGGGGGEEEESSCTT-GGGCSEEEE
T ss_pred             CCCeEEEEeeCHHHHHHHHHH-H-cCCEEEEEECCHHHH-HHHHHHH-------HHHHhCCeEEeCCHHH-HcCCCEEEE
Confidence            568999999999999999998 6 799999999997542 2221110       0000 01223456777 899999998


Q ss_pred             eC
Q 026023          243 LC  244 (244)
Q Consensus       243 ~~  244 (244)
                      ++
T Consensus        80 av   81 (293)
T 1zej_A           80 AV   81 (293)
T ss_dssp             CC
T ss_pred             cC
Confidence            64

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=97.55  E-value=0.00018  Score=58.05  Aligned_cols=70  Identities=11%  Similarity=0.212  Sum_probs=48.7

Q ss_pred             EEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          167 TVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       167 tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +++|+| .|.+|+.+++.| ...|.+|.+++|++.. .++..+.++....     ..... ..++++.++++|+|++++
T Consensus         2 ~i~iiGa~G~~G~~ia~~l-~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~D~Vi~~~   72 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRL-ATLGHEIVVGSRREEK-AEAKAAEYRRIAG-----DASIT-GMKNEDAAEACDIAVLTI   72 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHH-HTTTCEEEEEESSHHH-HHHHHHHHHHHHS-----SCCEE-EEEHHHHHHHCSEEEECS
T ss_pred             eEEEEcCCCHHHHHHHHHH-HHCCCEEEEEeCCHHH-HHHHHHHhccccc-----cCCCC-hhhHHHHHhcCCEEEEeC
Confidence            699999 999999999998 6889999999998643 2222221211110     00111 357889999999999874

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.55  E-value=4.4e-05  Score=57.36  Aligned_cols=38  Identities=21%  Similarity=0.469  Sum_probs=32.6

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       163 l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +.+++++|+|+|.+|+.+++.| ...|.+|..+++++..
T Consensus         4 ~~~~~v~I~G~G~iG~~~a~~l-~~~g~~v~~~d~~~~~   41 (144)
T 2hmt_A            4 IKNKQFAVIGLGRFGGSIVKEL-HRMGHEVLAVDINEEK   41 (144)
T ss_dssp             --CCSEEEECCSHHHHHHHHHH-HHTTCCCEEEESCHHH
T ss_pred             CcCCcEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            5677899999999999999998 7899999999997543

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=97.51  E-value=0.00015  Score=66.47  Aligned_cols=68  Identities=13%  Similarity=0.219  Sum_probs=50.2

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhh---CCEEEE
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVVCT  242 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---sD~Vvl  242 (244)
                      ++|||||+|.+|+.+|+.| ...|.+|.+|+|++.. .+++.+.+       ..  .+.....+++++++.   +|+|++
T Consensus         6 ~~IgvIG~G~mG~~lA~~L-~~~G~~V~v~dr~~~~-~~~l~~~~-------~~--~gi~~~~s~~e~v~~l~~aDvVil   74 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNV-ESRGYTVAIYNRTTSK-TEEVFKEH-------QD--KNLVFTKTLEEFVGSLEKPRRIML   74 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHH-HHTTCCEEEECSSHHH-HHHHHHHT-------TT--SCEEECSSHHHHHHTBCSSCEEEE
T ss_pred             CcEEEEeeHHHHHHHHHHH-HhCCCEEEEEcCCHHH-HHHHHHhC-------cC--CCeEEeCCHHHHHhhccCCCEEEE
Confidence            5799999999999999998 6789999999998654 22222211       00  123345689999887   999998


Q ss_pred             eC
Q 026023          243 LC  244 (244)
Q Consensus       243 ~~  244 (244)
                      ++
T Consensus        75 av   76 (474)
T 2iz1_A           75 MV   76 (474)
T ss_dssp             CC
T ss_pred             Ec
Confidence            75

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.50  E-value=0.00034  Score=59.79  Aligned_cols=77  Identities=23%  Similarity=0.274  Sum_probs=54.1

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      ++.|+++.|+|.|.+|+.++..| ...|+ +|..++|+... .++..+.++...   ....+.....+++++.++++|+|
T Consensus       124 ~l~~k~vlVlGaGG~g~aia~~L-~~~G~~~v~i~~R~~~~-a~~la~~~~~~~---~~~~i~~~~~~~l~~~l~~~DiV  198 (283)
T 3jyo_A          124 NAKLDSVVQVGAGGVGNAVAYAL-VTHGVQKLQVADLDTSR-AQALADVINNAV---GREAVVGVDARGIEDVIAAADGV  198 (283)
T ss_dssp             TCCCSEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSSHHH-HHHHHHHHHHHH---TSCCEEEECSTTHHHHHHHSSEE
T ss_pred             CcCCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEECCHHH-HHHHHHHHHhhc---CCceEEEcCHHHHHHHHhcCCEE
Confidence            47899999999999999999998 68999 79999998754 233322221110   00111122335899999999999


Q ss_pred             EEe
Q 026023          241 CTL  243 (244)
Q Consensus       241 vl~  243 (244)
                      |.+
T Consensus       199 Ina  201 (283)
T 3jyo_A          199 VNA  201 (283)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            875

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=97.48  E-value=0.00018  Score=61.64  Aligned_cols=76  Identities=17%  Similarity=0.196  Sum_probs=49.4

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhh----hhhhhhcCCCC-------------CccccccC
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA----YGQFLKANGEQ-------------PVTWKRAS  228 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-------------~~~~~~~~  228 (244)
                      ++|+|||.|.+|..+|..| ..-|.+|..+|+++... +...+.    +.... ..+..             ........
T Consensus        16 ~~I~VIG~G~mG~~iA~~l-a~~G~~V~~~d~~~~~~-~~~~~~i~~~l~~~~-~~g~~~~~~~~~~~~~~~~~~i~~~~   92 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVA-AATGHTVVLVDQTEDIL-AKSKKGIEESLRKVA-KKKFAENPKAGDEFVEKTLSTIATST   92 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHH-HHHHHHHHHHHHHHH-HTTSSSCHHHHHHHHHHHHHTEEEES
T ss_pred             CEEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHHH-HHHHHHHHHHHHHHH-HcCCCCccccchhhHHHHHhceEEec
Confidence            5899999999999999998 46799999999986542 111000    00000 01100             00122346


Q ss_pred             CHHHHhhhCCEEEEeC
Q 026023          229 SMDEVLREADVVCTLC  244 (244)
Q Consensus       229 ~l~ell~~sD~Vvl~~  244 (244)
                      ++++.+++||+|++++
T Consensus        93 ~~~~~~~~aD~Vi~av  108 (302)
T 1f0y_A           93 DAASVVHSTDLVVEAI  108 (302)
T ss_dssp             CHHHHTTSCSEEEECC
T ss_pred             CHHHhhcCCCEEEEcC
Confidence            8888999999999874

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=97.47  E-value=0.00026  Score=60.10  Aligned_cols=139  Identities=12%  Similarity=0.158  Sum_probs=86.5

Q ss_pred             HhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccHHHH-HHhhccCCcEEEEcccCCCccChHHH
Q 026023           34 IEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGETLF-AALSRAGGKAFSNMAVGYNNVDVNAA  105 (244)
Q Consensus        34 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~~~l-~~~p~l~~k~I~~~~aG~d~id~~~~  105 (244)
                      ++.|+ .+.+..++ ..+++|+.+.+.+     .++++++..+  ..+++..+ +.....  |       =+|.+.....
T Consensus        53 ~~~Gi-~~~~~lp~-~~s~~ell~~I~~lN~D~~v~GIlvqlPLP~~id~~~v~~~I~p~--K-------DVDG~~p~n~  121 (276)
T 3ngx_A           53 KKIGI-AVDLEKYD-DISMKDLLKRIDDLAKDPQINGIMIENPLPKGFDYYEIVRNIPYY--K-------DVDALSPYNQ  121 (276)
T ss_dssp             HHHTC-EEEEEEES-SCCHHHHHHHHHHHHHCTTCCEEEECSCCCTTCCHHHHHTTSCGG--G-------BTTCCSHHHH
T ss_pred             HHCCe-EEEEECCC-CCCHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCHHHHHhhCCCC--C-------cccCCCccch
Confidence            44577 55444443 3588888877622     5789998753  23554433 333221  2       2333322111


Q ss_pred             hhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh-HHHHHHHHH
Q 026023          106 NKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARMM  184 (244)
Q Consensus       106 ~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~-IG~~vA~~l  184 (244)
                         |-...+.+ .+...++.-++.++=.                         .+  +.|+++.|+|.|. +|+.+|++|
T Consensus       122 ---G~l~~g~~-~~~PcTp~gv~~lL~~-------------------------~~--l~Gk~vvVvG~s~iVG~plA~lL  170 (276)
T 3ngx_A          122 ---GLIALNRE-FLVPATPRAVIDIMDY-------------------------YG--YHENTVTIVNRSPVVGRPLSMML  170 (276)
T ss_dssp             ---HHHHTTCC-SSCCHHHHHHHHHHHH-------------------------HT--CCSCEEEEECCCTTTHHHHHHHH
T ss_pred             ---hhhhcCCC-CCCCCcHHHHHHHHHH-------------------------hC--cCCCEEEEEcCChHHHHHHHHHH
Confidence               10111123 3456666665543322                         12  8999999999997 799999998


Q ss_pred             hccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          185 VEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       185 a~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                       ...|++|..++++.                            .+|.+.+++||+|+..
T Consensus       171 -~~~gAtVtv~~~~t----------------------------~~L~~~~~~ADIVI~A  200 (276)
T 3ngx_A          171 -LNRNYTVSVCHSKT----------------------------KDIGSMTRSSKIVVVA  200 (276)
T ss_dssp             -HHTTCEEEEECTTC----------------------------SCHHHHHHHSSEEEEC
T ss_pred             -HHCCCeEEEEeCCc----------------------------ccHHHhhccCCEEEEC
Confidence             89999999998642                            4799999999999875

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.46  E-value=0.00017  Score=62.58  Aligned_cols=77  Identities=12%  Similarity=0.100  Sum_probs=52.3

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcc--hHHHHHHhhhhhhhhcCCCCCccccccCC---HHHHhh
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEVLR  235 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~ell~  235 (244)
                      ++.|+++.|+|.|.+|+.++..| ...|+ +|..++|+.+  +..++..+.++..   .+ ..+....+++   +.+.++
T Consensus       151 ~l~gk~~lVlGaGG~g~aia~~L-~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~---~~-~~~~~~~~~~~~~l~~~l~  225 (315)
T 3tnl_A          151 DIIGKKMTICGAGGAATAICIQA-ALDGVKEISIFNRKDDFYANAEKTVEKINSK---TD-CKAQLFDIEDHEQLRKEIA  225 (315)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHH-HHTTCSEEEEEECSSTTHHHHHHHHHHHHHH---SS-CEEEEEETTCHHHHHHHHH
T ss_pred             CccCCEEEEECCChHHHHHHHHH-HHCCCCEEEEEECCCchHHHHHHHHHHhhhh---cC-CceEEeccchHHHHHhhhc
Confidence            48899999999999999999998 78999 8999999832  2233333222111   01 1112223333   667789


Q ss_pred             hCCEEEEe
Q 026023          236 EADVVCTL  243 (244)
Q Consensus       236 ~sD~Vvl~  243 (244)
                      ++|+||.+
T Consensus       226 ~aDiIINa  233 (315)
T 3tnl_A          226 ESVIFTNA  233 (315)
T ss_dssp             TCSEEEEC
T ss_pred             CCCEEEEC
Confidence            99999865

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=97.44  E-value=0.00019  Score=62.55  Aligned_cols=77  Identities=17%  Similarity=0.238  Sum_probs=49.9

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCC-Cccc-cccCCHHHHhhhCCEEEEe
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ-PVTW-KRASSMDEVLREADVVCTL  243 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~l~ell~~sD~Vvl~  243 (244)
                      .+|+|+|+|.+|..+|..| ...|.+|.+++|++.. .+...+..+......... .... ....+++++++.+|+|+++
T Consensus         5 mki~iiG~G~~G~~~a~~L-~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~   82 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYL-ALKGQSVLAWDIDAQR-IKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV   82 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHH-HHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC
T ss_pred             CeEEEECCCHHHHHHHHHH-HhCCCEEEEEeCCHHH-HHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEe
Confidence            5899999999999999998 6789999999998643 122111111000000000 0011 1346899999999999987


Q ss_pred             C
Q 026023          244 C  244 (244)
Q Consensus       244 ~  244 (244)
                      +
T Consensus        83 v   83 (359)
T 1bg6_A           83 V   83 (359)
T ss_dssp             S
T ss_pred             C
Confidence            5

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=97.42  E-value=0.0003  Score=64.12  Aligned_cols=76  Identities=16%  Similarity=0.175  Sum_probs=48.0

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCC--------CccccccCCHHHHhhhC
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--------PVTWKRASSMDEVLREA  237 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~ell~~s  237 (244)
                      ++|+|||.|.+|..+|..| ..-|.+|..+|+++..........+....+ .+..        .-......+++ .+++|
T Consensus        55 ~kVaVIGaG~MG~~IA~~l-a~aG~~V~l~D~~~e~a~~~i~~~l~~~~~-~G~l~~~~~~~~~~~i~~t~dl~-al~~a  131 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICF-GLAGIETFLVVRNEQRCKQELEVMYAREKS-FKRLNDKRIEKINANLKITSDFH-KLSNC  131 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHHHHHHHHHHH-TTSCCHHHHHHHHTTEEEESCGG-GCTTC
T ss_pred             CEEEEECCCHHHHHHHHHH-HHCCCeEEEEECcHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHhcceEEeCCHH-HHccC
Confidence            6899999999999999998 567999999999976211100001100111 1100        00112345775 68999


Q ss_pred             CEEEEeC
Q 026023          238 DVVCTLC  244 (244)
Q Consensus       238 D~Vvl~~  244 (244)
                      |+|+.++
T Consensus       132 DlVIeAV  138 (460)
T 3k6j_A          132 DLIVESV  138 (460)
T ss_dssp             SEEEECC
T ss_pred             CEEEEcC
Confidence            9999874

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.40  E-value=0.00012  Score=55.46  Aligned_cols=35  Identities=17%  Similarity=0.319  Sum_probs=32.0

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .++.|+|+|++|+.+|+.| +..|.+|+++++++..
T Consensus         8 ~~viIiG~G~~G~~la~~L-~~~g~~v~vid~~~~~   42 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKL-LASDIPLVVIETSRTR   42 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHH-HHTTCCEEEEESCHHH
T ss_pred             CCEEEECcCHHHHHHHHHH-HHCCCCEEEEECCHHH
Confidence            4699999999999999998 8999999999998754

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.39  E-value=0.0002  Score=54.95  Aligned_cols=34  Identities=9%  Similarity=-0.052  Sum_probs=31.1

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~  199 (244)
                      ++++.|+|+|++|+.+++.| ...|.+|.++++++
T Consensus         3 ~~~vlI~G~G~vG~~la~~L-~~~g~~V~vid~~~   36 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQL-NQRGQNVTVISNLP   36 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHH-HHTTCCEEEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHH-HHCCCCEEEEECCC
Confidence            45799999999999999998 78999999999975

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=97.39  E-value=0.00022  Score=65.78  Aligned_cols=69  Identities=16%  Similarity=0.254  Sum_probs=50.3

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhh---CCEEEE
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVVCT  242 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---sD~Vvl  242 (244)
                      .+|||||+|.+|+.+|+.| ..-|.+|.+|+|++... ++..+.      ...  ..+.....++.++++.   +|+|++
T Consensus        11 ~~IgvIGlG~MG~~lA~~L-a~~G~~V~v~dr~~~~~-~~l~~~------~~~--~~gi~~~~s~~e~v~~l~~aDvVil   80 (497)
T 2p4q_A           11 ADFGLIGLAVMGQNLILNA-ADHGFTVCAYNRTQSKV-DHFLAN------EAK--GKSIIGATSIEDFISKLKRPRKVML   80 (497)
T ss_dssp             CSEEEECCSHHHHHHHHHH-HHTTCCEEEECSSSHHH-HHHHHT------TTT--TSSEECCSSHHHHHHTSCSSCEEEE
T ss_pred             CCEEEEeeHHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHHcc------ccc--CCCeEEeCCHHHHHhcCCCCCEEEE
Confidence            4799999999999999999 57799999999987542 222110      000  0123345689999987   999998


Q ss_pred             eC
Q 026023          243 LC  244 (244)
Q Consensus       243 ~~  244 (244)
                      ++
T Consensus        81 ~V   82 (497)
T 2p4q_A           81 LV   82 (497)
T ss_dssp             CC
T ss_pred             Ec
Confidence            75

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.39  E-value=9.4e-05  Score=55.90  Aligned_cols=37  Identities=16%  Similarity=0.138  Sum_probs=32.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .++++.|+|+|.+|+.+|+.| ...|.+|.++|+++..
T Consensus         5 ~~~~v~I~G~G~iG~~la~~L-~~~g~~V~~id~~~~~   41 (141)
T 3llv_A            5 GRYEYIVIGSEAAGVGLVREL-TAAGKKVLAVDKSKEK   41 (141)
T ss_dssp             -CCSEEEECCSHHHHHHHHHH-HHTTCCEEEEESCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEECCHHH
Confidence            456899999999999999998 7899999999998654

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=97.38  E-value=0.00055  Score=60.25  Aligned_cols=74  Identities=20%  Similarity=0.343  Sum_probs=51.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      .++++||||.|.+|+..++.|....+. +|..|+|++.. .+++.+.+..      ...+.+....++++++++||+|++
T Consensus       128 ~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~-a~~la~~~~~------~~g~~~~~~~~~~eav~~aDiVi~  200 (350)
T 1x7d_A          128 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLA-TAKLIANLKE------YSGLTIRRASSVAEAVKGVDIITT  200 (350)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHH-HHHHHHHHTT------CTTCEEEECSSHHHHHTTCSEEEE
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHH-HHHHHHHHHh------ccCceEEEeCCHHHHHhcCCEEEE
Confidence            456999999999999998876344554 79999998754 3444333311      001223345789999999999998


Q ss_pred             eC
Q 026023          243 LC  244 (244)
Q Consensus       243 ~~  244 (244)
                      +.
T Consensus       201 aT  202 (350)
T 1x7d_A          201 VT  202 (350)
T ss_dssp             CC
T ss_pred             ec
Confidence            64

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.36  E-value=0.0004  Score=51.78  Aligned_cols=36  Identities=19%  Similarity=0.399  Sum_probs=31.7

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +.+++|+|+|.+|+.+++.| ...|.+|.++++++..
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L-~~~g~~v~~~d~~~~~   39 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSL-SEKGHDIVLIDIDKDI   39 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCEEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHH
Confidence            46899999999999999998 7889999999997643

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=97.36  E-value=0.0003  Score=63.61  Aligned_cols=79  Identities=16%  Similarity=0.312  Sum_probs=50.7

Q ss_pred             ccccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhh--------hhhhhhcCCCCCccccccCCHH
Q 026023          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA--------YGQFLKANGEQPVTWKRASSMD  231 (244)
Q Consensus       160 ~~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~  231 (244)
                      +++..-.+|+|+|+|.+|..+|..|+ . |.+|++||+++..- +..-+.        ...+... .  ........++.
T Consensus        31 ~r~~~~mkIaVIGlG~mG~~lA~~La-~-G~~V~~~D~~~~~v-~~l~~g~~~i~e~~l~~ll~~-~--~~~l~~ttd~~  104 (432)
T 3pid_A           31 GRGSEFMKITISGTGYVGLSNGVLIA-Q-NHEVVALDIVQAKV-DMLNQKISPIVDKEIQEYLAE-K--PLNFRATTDKH  104 (432)
T ss_dssp             ----CCCEEEEECCSHHHHHHHHHHH-T-TSEEEEECSCHHHH-HHHHTTCCSSCCHHHHHHHHH-S--CCCEEEESCHH
T ss_pred             ccccCCCEEEEECcCHHHHHHHHHHH-c-CCeEEEEecCHHHh-hHHhccCCccccccHHHHHhh-c--cCCeEEEcCHH
Confidence            34556679999999999999999985 5 99999999987541 211100        0000000 0  01233446899


Q ss_pred             HHhhhCCEEEEeC
Q 026023          232 EVLREADVVCTLC  244 (244)
Q Consensus       232 ell~~sD~Vvl~~  244 (244)
                      +.+++||+|++++
T Consensus       105 ea~~~aDvViiaV  117 (432)
T 3pid_A          105 DAYRNADYVIIAT  117 (432)
T ss_dssp             HHHTTCSEEEECC
T ss_pred             HHHhCCCEEEEeC
Confidence            9999999999874

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=97.36  E-value=0.0003  Score=64.44  Aligned_cols=71  Identities=18%  Similarity=0.236  Sum_probs=49.9

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhh---CCEEEEe
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVVCTL  243 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---sD~Vvl~  243 (244)
                      +|||||+|.+|+.+|+.| ...|.+|.+|+|++.. .++..+.+|..  .   .........+++++++.   +|+|+++
T Consensus         3 kIgVIG~G~mG~~lA~~L-a~~G~~V~v~dr~~~~-~~~l~~~~g~~--~---~~~~i~~~~~~~e~v~~l~~aDvVila   75 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNI-AEKGFKVAVFNRTYSK-SEEFMKANASA--P---FAGNLKAFETMEAFAASLKKPRKALIL   75 (478)
T ss_dssp             SEEEECCSHHHHHHHHHH-HHTTCCEEEECSSHHH-HHHHHHHTTTS--T---TGGGEEECSCHHHHHHHBCSSCEEEEC
T ss_pred             EEEEEChHHHHHHHHHHH-HHCCCEEEEEeCCHHH-HHHHHHhcCCC--C---CCCCeEEECCHHHHHhcccCCCEEEEe
Confidence            699999999999999998 6789999999998654 22222221110  0   00113345689999885   9999987


Q ss_pred             C
Q 026023          244 C  244 (244)
Q Consensus       244 ~  244 (244)
                      +
T Consensus        76 V   76 (478)
T 1pgj_A           76 V   76 (478)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=97.35  E-value=0.00025  Score=61.49  Aligned_cols=71  Identities=24%  Similarity=0.405  Sum_probs=49.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      ..++++|+|.|.+|+..++.|.+.++. +|.+|+|+ +.  +++.+.+...   .   ...+... ++++.+++||+|+.
T Consensus       120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~-~a--~~la~~l~~~---~---g~~~~~~-~~~eav~~aDIVi~  189 (313)
T 3hdj_A          120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY-AS--PEILERIGRR---C---GVPARMA-APADIAAQADIVVT  189 (313)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT-CC--HHHHHHHHHH---H---TSCEEEC-CHHHHHHHCSEEEE
T ss_pred             CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc-HH--HHHHHHHHHh---c---CCeEEEe-CHHHHHhhCCEEEE
Confidence            357999999999999999988444565 79999999 43  3332222110   0   1222334 89999999999998


Q ss_pred             eC
Q 026023          243 LC  244 (244)
Q Consensus       243 ~~  244 (244)
                      +.
T Consensus       190 aT  191 (313)
T 3hdj_A          190 AT  191 (313)
T ss_dssp             CC
T ss_pred             cc
Confidence            63

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=97.35  E-value=0.00023  Score=65.25  Aligned_cols=69  Identities=13%  Similarity=0.215  Sum_probs=49.4

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh---hCCEEEE
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR---EADVVCT  242 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---~sD~Vvl  242 (244)
                      .+|||||+|.+|+.+|+.| ...|.+|.+|+|++... ++..+.      ...  ..+.....+++++++   .+|+|++
T Consensus         3 m~IgvIG~G~mG~~lA~~L-a~~G~~V~v~dr~~~~~-~~l~~~------~~~--g~gi~~~~~~~e~v~~l~~aDvVil   72 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNM-NDHGFVVCAFNRTVSKV-DDFLAN------EAK--GTKVLGAHSLEEMVSKLKKPRRIIL   72 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHH-HHTTCCEEEECSSTHHH-HHHHHT------TTT--TSSCEECSSHHHHHHHBCSSCEEEE
T ss_pred             CeEEEEChHHHHHHHHHHH-HHCCCeEEEEeCCHHHH-HHHHhc------ccc--CCCeEEeCCHHHHHhhccCCCEEEE
Confidence            4699999999999999998 67899999999986542 222110      000  012334568999885   8999998


Q ss_pred             eC
Q 026023          243 LC  244 (244)
Q Consensus       243 ~~  244 (244)
                      ++
T Consensus        73 aV   74 (482)
T 2pgd_A           73 LV   74 (482)
T ss_dssp             CS
T ss_pred             eC
Confidence            75

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=97.33  E-value=0.00049  Score=60.46  Aligned_cols=75  Identities=12%  Similarity=0.158  Sum_probs=49.0

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcC-CC-CCccccccCCHHHHhhhCCEEEEeC
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-GE-QPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +|+|||.|.+|..+|..| ..-|.+|.+|+|++.. .+...+. +...... +. .........++.+.++.+|+|++++
T Consensus        17 kI~iIG~G~mG~~la~~L-~~~G~~V~~~~r~~~~-~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav   93 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVL-SKKCREVCVWHMNEEE-VRLVNEK-RENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVI   93 (366)
T ss_dssp             EEEEECCSHHHHHHHHHH-TTTEEEEEEECSCHHH-HHHHHHH-TBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECC
T ss_pred             eEEEECCCHHHHHHHHHH-HhCCCEEEEEECCHHH-HHHHHHc-CcccccccccccccceeeeCCHHHHHcCCCEEEECC
Confidence            799999999999999998 6779999999998643 1221111 0000000 00 0011233467889999999999875

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=97.32  E-value=0.00027  Score=53.85  Aligned_cols=63  Identities=13%  Similarity=0.153  Sum_probs=48.4

Q ss_pred             ccCCCEEEEEcC----ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhC
Q 026023          162 LLKGQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (244)
Q Consensus       162 ~l~g~tvgIvG~----G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s  237 (244)
                      -..-++|+|||.    |++|..+++.| ...|.+|..++|+..+-                   .+..-+.++.|+....
T Consensus        11 l~~p~~IavIGaS~~~g~~G~~~~~~L-~~~G~~V~~vnp~~~~i-------------------~G~~~~~s~~el~~~v   70 (138)
T 1y81_A           11 SKEFRKIALVGASKNPAKYGNIILKDL-LSKGFEVLPVNPNYDEI-------------------EGLKCYRSVRELPKDV   70 (138)
T ss_dssp             ---CCEEEEETCCSCTTSHHHHHHHHH-HHTTCEEEEECTTCSEE-------------------TTEECBSSGGGSCTTC
T ss_pred             ccCCCeEEEEeecCCCCCHHHHHHHHH-HHCCCEEEEeCCCCCeE-------------------CCeeecCCHHHhCCCC
Confidence            356789999999    99999999998 78999999999875330                   1122346889998999


Q ss_pred             CEEEEeC
Q 026023          238 DVVCTLC  244 (244)
Q Consensus       238 D~Vvl~~  244 (244)
                      |++++++
T Consensus        71 Dlvii~v   77 (138)
T 1y81_A           71 DVIVFVV   77 (138)
T ss_dssp             CEEEECS
T ss_pred             CEEEEEe
Confidence            9999864

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=97.30  E-value=0.00028  Score=63.81  Aligned_cols=75  Identities=12%  Similarity=0.182  Sum_probs=48.8

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCC--------CccccccCCHHHHhhhCC
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--------PVTWKRASSMDEVLREAD  238 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~ell~~sD  238 (244)
                      +|+|+|+|.+|..+|..| ...|.+|+++|+++... +..-+. +......+..        ........++++.++.||
T Consensus         2 kI~VIG~G~vG~~~A~~l-a~~G~~V~~~d~~~~~~-~~l~~~-~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aD   78 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCL-SARGHEVIGVDVSSTKI-DLINQG-KSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSD   78 (436)
T ss_dssp             EEEEECCSTTHHHHHHHH-HHTTCEEEEECSCHHHH-HHHHTT-CCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCS
T ss_pred             EEEEECCCHHHHHHHHHH-HHCCCEEEEEECCHHHH-HHHhCC-CCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCC
Confidence            799999999999999998 57899999999986541 211100 0000000000        001233468889999999


Q ss_pred             EEEEeC
Q 026023          239 VVCTLC  244 (244)
Q Consensus       239 ~Vvl~~  244 (244)
                      +|++++
T Consensus        79 vviiaV   84 (436)
T 1mv8_A           79 VSFICV   84 (436)
T ss_dssp             EEEECC
T ss_pred             EEEEEc
Confidence            999975

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=97.30  E-value=0.0008  Score=57.63  Aligned_cols=66  Identities=17%  Similarity=0.366  Sum_probs=47.7

Q ss_pred             CEEEEEcCChHHHH-HHHHHhccCCcEEE-EEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          166 QTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       166 ~tvgIvG~G~IG~~-vA~~la~afG~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      .++||||+|+||+. .++.|.+.-+.++. .+|+++.. .+++.+.||            ...+.++++++++.|+|+++
T Consensus         7 ~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~-~~~~a~~~~------------~~~~~~~~~ll~~~D~V~i~   73 (308)
T 3uuw_A            7 IKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVK-REKICSDYR------------IMPFDSIESLAKKCDCIFLH   73 (308)
T ss_dssp             CEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHH-HHHHHHHHT------------CCBCSCHHHHHTTCSEEEEC
T ss_pred             CcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHH-HHHHHHHcC------------CCCcCCHHHHHhcCCEEEEe
Confidence            58999999999996 88877443578887 57877643 233333331            12257999999999999987


Q ss_pred             C
Q 026023          244 C  244 (244)
Q Consensus       244 ~  244 (244)
                      +
T Consensus        74 t   74 (308)
T 3uuw_A           74 S   74 (308)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=97.29  E-value=0.00076  Score=59.01  Aligned_cols=65  Identities=25%  Similarity=0.369  Sum_probs=47.4

Q ss_pred             CEEEEEcCChHHHHHHHHHhccC-CcEEE-EEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh--hhCCEEE
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL--READVVC  241 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~af-G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell--~~sD~Vv  241 (244)
                      .+|||||+|.||+..++.+ +.. ++++. ++|+++.. .+++.+.+|            ...+.++++++  .+.|+|+
T Consensus         6 ~~vgiiG~G~~g~~~~~~l-~~~~~~~lvav~d~~~~~-~~~~~~~~g------------~~~~~~~~~~l~~~~~D~V~   71 (354)
T 3db2_A            6 VGVAAIGLGRWAYVMADAY-TKSEKLKLVTCYSRTEDK-REKFGKRYN------------CAGDATMEALLAREDVEMVI   71 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHH-TTCSSEEEEEEECSSHHH-HHHHHHHHT------------CCCCSSHHHHHHCSSCCEEE
T ss_pred             ceEEEEccCHHHHHHHHHH-HhCCCcEEEEEECCCHHH-HHHHHHHcC------------CCCcCCHHHHhcCCCCCEEE
Confidence            4899999999999999998 677 88866 56777543 233333321            22357999999  5689999


Q ss_pred             EeC
Q 026023          242 TLC  244 (244)
Q Consensus       242 l~~  244 (244)
                      +++
T Consensus        72 i~t   74 (354)
T 3db2_A           72 ITV   74 (354)
T ss_dssp             ECS
T ss_pred             EeC
Confidence            864

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=97.28  E-value=0.00065  Score=59.89  Aligned_cols=77  Identities=16%  Similarity=0.211  Sum_probs=50.5

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCC--CCccccccCCHHHHhhhCCEEEE
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE--QPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      ..+|+|+|.|.+|..+|..| ..-|.+|..|+|++.. .+. ....|.-..-...  .........++.+.++.||+|++
T Consensus        29 ~mkI~VIGaG~mG~alA~~L-a~~G~~V~l~~r~~~~-~~~-i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVil  105 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVL-ARKGQKVRLWSYESDH-VDE-MQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILI  105 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHH-HTTTCCEEEECSCHHH-HHH-HHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEE
T ss_pred             CCeEEEECccHHHHHHHHHH-HHCCCeEEEEeCCHHH-HHH-HHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEE
Confidence            46899999999999999998 6789999999998643 122 1111000000000  01112234689999999999998


Q ss_pred             eC
Q 026023          243 LC  244 (244)
Q Consensus       243 ~~  244 (244)
                      ++
T Consensus       106 aV  107 (356)
T 3k96_A          106 VV  107 (356)
T ss_dssp             CC
T ss_pred             CC
Confidence            74

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.28  E-value=0.00079  Score=58.33  Aligned_cols=77  Identities=17%  Similarity=0.202  Sum_probs=52.3

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcc--hHHHHHHhhhhhhhhcCCCCCccccccCCH---HHHhh
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRASSM---DEVLR  235 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~ell~  235 (244)
                      ++.|+++.|+|.|.+|+.++..| ...|+ +|..++|+..  +..++..+.++..   .+ ..+......++   .+.++
T Consensus       145 ~l~gk~~lVlGAGGaaraia~~L-~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~---~~-~~v~~~~~~~l~~~~~~l~  219 (312)
T 3t4e_A          145 DMRGKTMVLLGAGGAATAIGAQA-AIEGIKEIKLFNRKDDFFEKAVAFAKRVNEN---TD-CVVTVTDLADQHAFTEALA  219 (312)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEEECSSTHHHHHHHHHHHHHHH---SS-CEEEEEETTCHHHHHHHHH
T ss_pred             CcCCCEEEEECcCHHHHHHHHHH-HHcCCCEEEEEECCCchHHHHHHHHHHhhhc---cC-cceEEechHhhhhhHhhcc
Confidence            47899999999999999999998 78999 8999999832  1223332222110   01 11112234455   67789


Q ss_pred             hCCEEEEe
Q 026023          236 EADVVCTL  243 (244)
Q Consensus       236 ~sD~Vvl~  243 (244)
                      ++|+||.+
T Consensus       220 ~~DiIINa  227 (312)
T 3t4e_A          220 SADILTNG  227 (312)
T ss_dssp             HCSEEEEC
T ss_pred             CceEEEEC
Confidence            99999865

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=97.28  E-value=0.00032  Score=64.03  Aligned_cols=75  Identities=15%  Similarity=0.309  Sum_probs=48.6

Q ss_pred             CEEEEEcCChHHHHHHHHHhccC--CcEEEEEcCCcchHHHHHHhh--------hhhhhhcCCCCCccccccCCHHHHhh
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGF--KMNLIYYDLYQATRLEKFVTA--------YGQFLKANGEQPVTWKRASSMDEVLR  235 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~af--G~~V~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~ell~  235 (244)
                      .+|+|||+|.+|..+|..|+ ..  |.+|++||+++... +..-+.        ...+.....  ..+.....++.+.++
T Consensus         6 mkI~VIG~G~mG~~lA~~La-~~g~G~~V~~~d~~~~~~-~~l~~g~~~i~e~~l~~~~~~~~--~~~~~~t~~~~e~~~   81 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIA-HMCPEIRVTVVDVNESRI-NAWNSPTLPIYEPGLKEVVESCR--GKNLFFSTNIDDAIK   81 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHH-HHCTTSEEEEECSCHHHH-HHHTSSSCSSCCTTHHHHHHHHB--TTTEEEESCHHHHHH
T ss_pred             cEEEEECCCHHHHHHHHHHH-hcCCCCEEEEEECCHHHH-HHHhCCCCCcCCCCHHHHHHHhh--cCCEEEECCHHHHHh
Confidence            48999999999999999984 55  89999999986541 110000        000000000  011223468889999


Q ss_pred             hCCEEEEeC
Q 026023          236 EADVVCTLC  244 (244)
Q Consensus       236 ~sD~Vvl~~  244 (244)
                      +||+|++++
T Consensus        82 ~aDvViiaV   90 (467)
T 2q3e_A           82 EADLVFISV   90 (467)
T ss_dssp             HCSEEEECC
T ss_pred             cCCEEEEEc
Confidence            999999975

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=97.24  E-value=0.00064  Score=59.05  Aligned_cols=71  Identities=21%  Similarity=0.348  Sum_probs=50.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      ..++++|+|.|.+|+..++.|++.++. +|..|+|++.. .+++.+.++.    .+   +... ..++++++ ++|+|++
T Consensus       124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~-a~~la~~~~~----~~---~~~~-~~~~~e~v-~aDvVi~  193 (322)
T 1omo_A          124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKA-AKKFVSYCED----RG---ISAS-VQPAEEAS-RCDVLVT  193 (322)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHH-HHHHHHHHHH----TT---CCEE-ECCHHHHT-SSSEEEE
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHH-HHHHHHHHHh----cC---ceEE-ECCHHHHh-CCCEEEE
Confidence            456999999999999999987443554 79999998754 3444443321    11   2233 57899999 9999998


Q ss_pred             eC
Q 026023          243 LC  244 (244)
Q Consensus       243 ~~  244 (244)
                      +.
T Consensus       194 aT  195 (322)
T 1omo_A          194 TT  195 (322)
T ss_dssp             CC
T ss_pred             ee
Confidence            63

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=97.23  E-value=0.00057  Score=62.16  Aligned_cols=73  Identities=16%  Similarity=0.256  Sum_probs=49.8

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCC-----------CccccccCCHHHHh
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ-----------PVTWKRASSMDEVL  234 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~ell  234 (244)
                      .+|+|+|+|.+|..+|..| ...|.+|++||+++.. .+..-+.  .  ......           ........++.+.+
T Consensus         3 mkI~VIG~G~vG~~lA~~L-a~~G~~V~~~D~~~~~-v~~l~~g--~--~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~   76 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCF-AELGANVRCIDTDRNK-IEQLNSG--T--IPIYEPGLEKMIARNVKAGRLRFGTEIEQAV   76 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHH-HHHHHHT--C--SCCCSTTHHHHHHHHHHTTSEEEESCHHHHG
T ss_pred             CEEEEECcCHHHHHHHHHH-HhcCCEEEEEECCHHH-HHHHHcC--C--CcccCCCHHHHHHhhcccCcEEEECCHHHHH
Confidence            4899999999999999998 5779999999998754 1211110  0  000000           01123346899999


Q ss_pred             hhCCEEEEeC
Q 026023          235 READVVCTLC  244 (244)
Q Consensus       235 ~~sD~Vvl~~  244 (244)
                      ++||+|++++
T Consensus        77 ~~aDvViiaV   86 (450)
T 3gg2_A           77 PEADIIFIAV   86 (450)
T ss_dssp             GGCSEEEECC
T ss_pred             hcCCEEEEEc
Confidence            9999999875

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=97.22  E-value=0.00086  Score=58.04  Aligned_cols=64  Identities=28%  Similarity=0.473  Sum_probs=47.0

Q ss_pred             CEEEEEcCChHHHHHHHHHhccC-CcEEE-EEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--hCCEEE
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVVC  241 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~af-G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sD~Vv  241 (244)
                      .+|||||+|.||+..++.+ ... ++++. ++|+++.. .+++.+.+            +.. +.+++++++  +.|+|+
T Consensus         4 ~~vgiiG~G~~g~~~~~~l-~~~~~~~l~av~d~~~~~-~~~~~~~~------------~~~-~~~~~~~l~~~~~D~V~   68 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAV-SGNADARLVAVADAFPAA-AEAIAGAY------------GCE-VRTIDAIEAAADIDAVV   68 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHH-HHCTTEEEEEEECSSHHH-HHHHHHHT------------TCE-ECCHHHHHHCTTCCEEE
T ss_pred             eEEEEECCCHHHHHHHHHH-hhCCCcEEEEEECCCHHH-HHHHHHHh------------CCC-cCCHHHHhcCCCCCEEE
Confidence            4799999999999999998 554 88887 57877643 23322222            122 579999999  899999


Q ss_pred             EeC
Q 026023          242 TLC  244 (244)
Q Consensus       242 l~~  244 (244)
                      +++
T Consensus        69 i~t   71 (331)
T 4hkt_A           69 ICT   71 (331)
T ss_dssp             ECS
T ss_pred             EeC
Confidence            864

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=97.22  E-value=0.00055  Score=61.28  Aligned_cols=72  Identities=17%  Similarity=0.299  Sum_probs=47.0

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhh--------hhhhhcCCCCCccccccCCHHHHhhhCC
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY--------GQFLKANGEQPVTWKRASSMDEVLREAD  238 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (244)
                      +|+|+|+|.+|..+|..| .. |.+|.++|+++... +..-+..        ..+... .  ........++.+.++.||
T Consensus         2 kI~VIG~G~vG~~~A~~L-a~-G~~V~~~d~~~~~~-~~l~~~~~~i~e~~l~~~~~~-~--~~~l~~t~~~~~~~~~aD   75 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLL-SL-QNEVTIVDILPSKV-DKINNGLSPIQDEYIEYYLKS-K--QLSIKATLDSKAAYKEAE   75 (402)
T ss_dssp             EEEEECCSHHHHHHHHHH-TT-TSEEEEECSCHHHH-HHHHTTCCSSCCHHHHHHHHH-S--CCCEEEESCHHHHHHHCS
T ss_pred             EEEEECCCHHHHHHHHHH-hC-CCEEEEEECCHHHH-HHHHcCCCCcCCCCHHHHHHh-c--cCcEEEeCCHHHHhcCCC
Confidence            799999999999999999 45 99999999986431 2111000        000000 0  001123357888999999


Q ss_pred             EEEEeC
Q 026023          239 VVCTLC  244 (244)
Q Consensus       239 ~Vvl~~  244 (244)
                      +|++++
T Consensus        76 vviiav   81 (402)
T 1dlj_A           76 LVIIAT   81 (402)
T ss_dssp             EEEECC
T ss_pred             EEEEec
Confidence            999875

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=97.22  E-value=0.00072  Score=58.88  Aligned_cols=65  Identities=23%  Similarity=0.326  Sum_probs=47.4

Q ss_pred             CEEEEEcCChHHHHHHHHHhccC-CcEEE-EEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--hCCEEE
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVVC  241 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~af-G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sD~Vv  241 (244)
                      .+|||||+|.||+..++.| +.. ++++. ++|+++.. .+.+.+.+            +...+.+++++++  +.|+|+
T Consensus         5 ~rvgiiG~G~~g~~~~~~l-~~~~~~~l~av~d~~~~~-~~~~a~~~------------g~~~~~~~~~~l~~~~~D~V~   70 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANI-AANPDLELVVIADPFIEG-AQRLAEAN------------GAEAVASPDEVFARDDIDGIV   70 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHH-HHCTTEEEEEEECSSHHH-HHHHHHTT------------TCEEESSHHHHTTCSCCCEEE
T ss_pred             eEEEEECCcHHHHHHHHHH-HhCCCcEEEEEECCCHHH-HHHHHHHc------------CCceeCCHHHHhcCCCCCEEE
Confidence            4799999999999999998 555 88877 57777543 23322222            1234579999999  899999


Q ss_pred             EeC
Q 026023          242 TLC  244 (244)
Q Consensus       242 l~~  244 (244)
                      +++
T Consensus        71 i~t   73 (344)
T 3euw_A           71 IGS   73 (344)
T ss_dssp             ECS
T ss_pred             EeC
Confidence            874

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=97.21  E-value=0.00083  Score=57.93  Aligned_cols=74  Identities=18%  Similarity=0.173  Sum_probs=46.7

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcC--CcchHHHHHHhhhhhhhhcCCCCCccccccC--CHHHHhhhCCEEEE
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDL--YQATRLEKFVTAYGQFLKANGEQPVTWKRAS--SMDEVLREADVVCT  242 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~ell~~sD~Vvl  242 (244)
                      +|+|+|.|.+|..+|..| ..-|.+|.+++|  ++.. .+...+ .|..... +..........  ++.+.++.+|+|++
T Consensus         2 ~I~iiG~G~mG~~~a~~L-~~~g~~V~~~~r~~~~~~-~~~~~~-~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~D~vi~   77 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPL-VDNGNEVRIWGTEFDTEI-LKSISA-GREHPRL-GVKLNGVEIFWPEQLEKCLENAEVVLL   77 (335)
T ss_dssp             EEEEESCCHHHHHHHHHH-HHHCCEEEEECCGGGHHH-HHHHHT-TCCBTTT-TBCCCSEEEECGGGHHHHHTTCSEEEE
T ss_pred             EEEEECcCHHHHHHHHHH-HhCCCeEEEEEccCCHHH-HHHHHH-hCcCccc-CccccceEEecHHhHHHHHhcCCEEEE
Confidence            799999999999999998 567899999999  5432 122111 0000000 00000011223  68888999999998


Q ss_pred             eC
Q 026023          243 LC  244 (244)
Q Consensus       243 ~~  244 (244)
                      ++
T Consensus        78 ~v   79 (335)
T 1txg_A           78 GV   79 (335)
T ss_dssp             CS
T ss_pred             cC
Confidence            75

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=97.20  E-value=0.00029  Score=62.39  Aligned_cols=72  Identities=17%  Similarity=0.314  Sum_probs=49.9

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      ..+.+++|||+|.|.+|+.+++.+ +.+|++|+++|+++........+.       .-  ..+....+.+.++++++|+|
T Consensus         8 ~~~~~~~IlIlG~G~lg~~la~aa-~~lG~~viv~d~~~~~p~~~~ad~-------~~--~~~~~d~~~l~~~~~~~dvi   77 (377)
T 3orq_A            8 KLKFGATIGIIGGGQLGKMMAQSA-QKMGYKVVVLDPSEDCPCRYVAHE-------FI--QAKYDDEKALNQLGQKCDVI   77 (377)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCTTCTTGGGSSE-------EE--ECCTTCHHHHHHHHHHCSEE
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCCChhhhhCCE-------EE--ECCCCCHHHHHHHHHhCCcc
Confidence            346899999999999999999996 999999999998765421111110       00  01111223477888899998


Q ss_pred             EE
Q 026023          241 CT  242 (244)
Q Consensus       241 vl  242 (244)
                      +.
T Consensus        78 ~~   79 (377)
T 3orq_A           78 TY   79 (377)
T ss_dssp             EE
T ss_pred             ee
Confidence            75

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.19  E-value=0.00065  Score=56.03  Aligned_cols=73  Identities=18%  Similarity=0.158  Sum_probs=51.8

Q ss_pred             ccccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (244)
Q Consensus       160 ~~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~  239 (244)
                      ..++.|++|.|||.|.+|.+.++.| ...|++|..+++...++.++..+.        +  .+.+..-.--++.|..+|+
T Consensus        26 fl~L~gk~VLVVGgG~va~~ka~~L-l~~GA~VtVvap~~~~~l~~l~~~--------~--~i~~i~~~~~~~dL~~adL   94 (223)
T 3dfz_A           26 MLDLKGRSVLVVGGGTIATRRIKGF-LQEGAAITVVAPTVSAEINEWEAK--------G--QLRVKRKKVGEEDLLNVFF   94 (223)
T ss_dssp             EECCTTCCEEEECCSHHHHHHHHHH-GGGCCCEEEECSSCCHHHHHHHHT--------T--SCEEECSCCCGGGSSSCSE
T ss_pred             EEEcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEECCCCCHHHHHHHHc--------C--CcEEEECCCCHhHhCCCCE
Confidence            4579999999999999999999999 899999999999876654443221        1  1111111112345678999


Q ss_pred             EEEe
Q 026023          240 VCTL  243 (244)
Q Consensus       240 Vvl~  243 (244)
                      |+.+
T Consensus        95 VIaA   98 (223)
T 3dfz_A           95 IVVA   98 (223)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            8875

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=97.18  E-value=0.00079  Score=58.90  Aligned_cols=66  Identities=24%  Similarity=0.340  Sum_probs=48.2

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccC--CcEEE-EEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--hCCE
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGF--KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADV  239 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~af--G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sD~  239 (244)
                      -.++||||+|.||+..++.+ +..  ++++. ++|+++.. .+++.+.+            +...+.+++++++  +.|+
T Consensus        13 ~~rvgiiG~G~~g~~~~~~l-~~~~~~~~lvav~d~~~~~-~~~~~~~~------------~~~~~~~~~~ll~~~~~D~   78 (354)
T 3q2i_A           13 KIRFALVGCGRIANNHFGAL-EKHADRAELIDVCDIDPAA-LKAAVERT------------GARGHASLTDMLAQTDADI   78 (354)
T ss_dssp             CEEEEEECCSTTHHHHHHHH-HHTTTTEEEEEEECSSHHH-HHHHHHHH------------CCEEESCHHHHHHHCCCSE
T ss_pred             cceEEEEcCcHHHHHHHHHH-HhCCCCeEEEEEEcCCHHH-HHHHHHHc------------CCceeCCHHHHhcCCCCCE
Confidence            35899999999999999998 565  88866 67777543 23333322            1234579999998  7899


Q ss_pred             EEEeC
Q 026023          240 VCTLC  244 (244)
Q Consensus       240 Vvl~~  244 (244)
                      |++++
T Consensus        79 V~i~t   83 (354)
T 3q2i_A           79 VILTT   83 (354)
T ss_dssp             EEECS
T ss_pred             EEECC
Confidence            99864

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=97.14  E-value=0.00083  Score=58.55  Aligned_cols=76  Identities=18%  Similarity=0.282  Sum_probs=48.8

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCC-------cEEEEEcCCcc-----hHHHHHHhhhhhhhhcC-CC-CCccccccCCHH
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFK-------MNLIYYDLYQA-----TRLEKFVTAYGQFLKAN-GE-QPVTWKRASSMD  231 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG-------~~V~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~l~  231 (244)
                      ++|+|+|.|.+|..+|..| ..-|       .+|..++|++.     . .+. ....+...... +. .........++.
T Consensus         9 mkI~iIG~G~mG~~~a~~l-~~~g~~~~~~~~~V~~~~r~~~~~~~~~-~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIV-GGNAAQLAQFDPRVTMWVFEEDIGGKKL-TEI-INTQHENVKYLPGHKLPPNVVAVPDVV   85 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHH-HHHHHHCTTEEEEEEEECCCCBSSSSBH-HHH-HHHHSCCTTTSTTCCCCTTEEEESSHH
T ss_pred             CeEEEECCCHHHHHHHHHH-HhcCCcccCCCCeEEEEEcChhhhhhHH-HHH-HHhcCcccccCCcccCccCeEEEcCHH
Confidence            5899999999999999998 4556       89999999875     2 121 11100000000 00 011122346788


Q ss_pred             HHhhhCCEEEEeC
Q 026023          232 EVLREADVVCTLC  244 (244)
Q Consensus       232 ell~~sD~Vvl~~  244 (244)
                      +.++.||+|++++
T Consensus        86 ~~~~~aD~Vilav   98 (354)
T 1x0v_A           86 QAAEDADILIFVV   98 (354)
T ss_dssp             HHHTTCSEEEECC
T ss_pred             HHHcCCCEEEEeC
Confidence            9999999999875

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.12  E-value=0.00089  Score=56.84  Aligned_cols=71  Identities=14%  Similarity=0.112  Sum_probs=49.0

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      ++.|+++.|+|.|.+|+.++..| ...|+ +|..++|+... .++..+.++.       ..+.....+++.+  .++|+|
T Consensus       117 ~l~~k~~lvlGaGg~~~aia~~L-~~~G~~~v~i~~R~~~~-a~~la~~~~~-------~~~~~~~~~~l~~--~~~Div  185 (272)
T 3pwz_A          117 PLRNRRVLLLGAGGAVRGALLPF-LQAGPSELVIANRDMAK-ALALRNELDH-------SRLRISRYEALEG--QSFDIV  185 (272)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHH-HHTCCSEEEEECSCHHH-HHHHHHHHCC-------TTEEEECSGGGTT--CCCSEE
T ss_pred             CccCCEEEEECccHHHHHHHHHH-HHcCCCEEEEEeCCHHH-HHHHHHHhcc-------CCeeEeeHHHhcc--cCCCEE
Confidence            57899999999999999999998 68997 99999998754 2333333210       1112222233333  789999


Q ss_pred             EEe
Q 026023          241 CTL  243 (244)
Q Consensus       241 vl~  243 (244)
                      +.+
T Consensus       186 Ina  188 (272)
T 3pwz_A          186 VNA  188 (272)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            875

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=97.09  E-value=0.00088  Score=58.17  Aligned_cols=74  Identities=15%  Similarity=0.280  Sum_probs=47.8

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      .+|+|+|.|++|..+|..| ..-|.+|..++|++.. .+...+. |.-....+. ........++.+ ++.+|+|++++
T Consensus        15 ~kI~iIG~G~mG~ala~~L-~~~G~~V~~~~r~~~~-~~~l~~~-g~~~~~~~~-~~~~~~~~~~~~-~~~aDvVil~v   88 (335)
T 1z82_A           15 MRFFVLGAGSWGTVFAQML-HENGEEVILWARRKEI-VDLINVS-HTSPYVEES-KITVRATNDLEE-IKKEDILVIAI   88 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSHHH-HHHHHHH-SCBTTBTTC-CCCSEEESCGGG-CCTTEEEEECS
T ss_pred             CcEEEECcCHHHHHHHHHH-HhCCCeEEEEeCCHHH-HHHHHHh-CCcccCCCC-eeeEEEeCCHHH-hcCCCEEEEEC
Confidence            3799999999999999998 5679999999998643 1221111 000000000 001233467888 89999999875

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=97.08  E-value=0.00048  Score=58.81  Aligned_cols=66  Identities=12%  Similarity=0.140  Sum_probs=47.7

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      ++.|+++.|+|.|..|+.++..| ...|+ +|..++|+... .++..+            .+....+.++++ + ++|+|
T Consensus       119 ~~~~k~vlvlGaGGaaraia~~L-~~~G~~~v~v~nRt~~k-a~~La~------------~~~~~~~~~l~~-l-~~Div  182 (282)
T 3fbt_A          119 EIKNNICVVLGSGGAARAVLQYL-KDNFAKDIYVVTRNPEK-TSEIYG------------EFKVISYDELSN-L-KGDVI  182 (282)
T ss_dssp             CCTTSEEEEECSSTTHHHHHHHH-HHTTCSEEEEEESCHHH-HHHHCT------------TSEEEEHHHHTT-C-CCSEE
T ss_pred             CccCCEEEEECCcHHHHHHHHHH-HHcCCCEEEEEeCCHHH-HHHHHH------------hcCcccHHHHHh-c-cCCEE
Confidence            47899999999999999999998 78999 89999998754 222211            111122334555 4 89999


Q ss_pred             EEe
Q 026023          241 CTL  243 (244)
Q Consensus       241 vl~  243 (244)
                      |.+
T Consensus       183 Ina  185 (282)
T 3fbt_A          183 INC  185 (282)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            865

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=97.07  E-value=0.0085  Score=51.35  Aligned_cols=144  Identities=17%  Similarity=0.153  Sum_probs=88.7

Q ss_pred             HHhCCCeEEEeccCCCCCCHHHHHHHhcC-----CccEEEeccC--ccccHH-HHHHhhccCCcEEEEcccCCCccChHH
Q 026023           33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVNA  104 (244)
Q Consensus        33 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~ad~ii~~~~--~~~~~~-~l~~~p~l~~k~I~~~~aG~d~id~~~  104 (244)
                      -++.|++...+..++ ..+++|+.+.+.+     .++++++..+  ..++++ +++..+.-  |       =+|.+-...
T Consensus        78 c~~vGi~s~~~~lp~-~~se~ell~~I~~LN~D~~V~GIlVQlPLP~hid~~~i~~~I~p~--K-------DVDG~hp~N  147 (303)
T 4b4u_A           78 CRRVGMDSLKIELPQ-ETTTEQLLAEIEKLNANPDVHGILLQHPVPAQIDERACFDAISLA--K-------DVDGVTCLG  147 (303)
T ss_dssp             HHHTTCEEEEEEECT-TCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHHSCGG--G-------CTTCCCHHH
T ss_pred             HHHcCCeEEEEecCc-cCCHHHHHHHHHHhcCCCCccEEEEeCCCccccChHHHHhccCcc--c-------ccCccCcch
Confidence            355687766555544 3588888876432     5779998743  235543 44444332  2       334332211


Q ss_pred             HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCChH-HHHHHHH
Q 026023          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI-GSAYARM  183 (244)
Q Consensus       105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~I-G~~vA~~  183 (244)
                      ..+   ...+.+ .+...++.- +..+|.                        ..+.++.||++.|+|-++| |+-+|.+
T Consensus       148 ~G~---L~~g~~-~~~PcTp~g-v~~lL~------------------------~~~i~l~Gk~vvViGRS~iVGkPla~L  198 (303)
T 4b4u_A          148 FGR---MAMGEA-AYGSATPAG-IMTILK------------------------ENNIEIAGKHAVVVGRSAILGKPMAMM  198 (303)
T ss_dssp             HHH---HHTTCC-CCCCHHHHH-HHHHHH------------------------HTTCCCTTCEEEEECCCTTTHHHHHHH
T ss_pred             HHH---hcCCCC-cccCccHHH-HHHHHH------------------------HHCCCCCCCEEEEEeccccccchHHHH
Confidence            111   111222 233444433 333333                        1235699999999999885 9999999


Q ss_pred             HhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       184 la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      | ..-|+.|..+..+.                            .+|.+..++||+|+..+
T Consensus       199 L-~~~~ATVTi~Hs~T----------------------------~dl~~~~~~ADIvV~A~  230 (303)
T 4b4u_A          199 L-LQANATVTICHSRT----------------------------QNLPELVKQADIIVGAV  230 (303)
T ss_dssp             H-HHTTCEEEEECTTC----------------------------SSHHHHHHTCSEEEECS
T ss_pred             H-HhcCCEEEEecCCC----------------------------CCHHHHhhcCCeEEecc
Confidence            8 78899998877542                            47999999999999753

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=97.05  E-value=0.0017  Score=56.29  Aligned_cols=67  Identities=10%  Similarity=0.133  Sum_probs=47.2

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEE-EEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--hCCEEEE
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVVCT  242 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sD~Vvl  242 (244)
                      .++||||+|.||+..++.|.+.=+++|. ++|+++.. .+++.+.||       .   + ..+.++++++.  +.|+|++
T Consensus         6 ~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~-~~~~~~~~~-------~---~-~~~~~~~~ll~~~~~D~V~i   73 (330)
T 3e9m_A            6 IRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLEN-AQKMAKELA-------I---P-VAYGSYEELCKDETIDIIYI   73 (330)
T ss_dssp             EEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHH-HHHHHHHTT-------C---C-CCBSSHHHHHHCTTCSEEEE
T ss_pred             EEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHH-HHHHHHHcC-------C---C-ceeCCHHHHhcCCCCCEEEE
Confidence            5899999999999999998333478877 46776543 333333331       1   0 23479999998  8999998


Q ss_pred             eC
Q 026023          243 LC  244 (244)
Q Consensus       243 ~~  244 (244)
                      ++
T Consensus        74 ~t   75 (330)
T 3e9m_A           74 PT   75 (330)
T ss_dssp             CC
T ss_pred             cC
Confidence            74

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=97.05  E-value=0.0019  Score=56.15  Aligned_cols=68  Identities=24%  Similarity=0.328  Sum_probs=47.2

Q ss_pred             CEEEEEcCChHHHHHHHHHh-ccCCcEEE-EEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhh--CCEEE
Q 026023          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVVC  241 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la-~afG~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--sD~Vv  241 (244)
                      .+|||||+|.||+..++.+. +.-++++. .+|+++.. .+++.+.||          +....+.++++++++  .|+|+
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~-~~~~~~~~g----------~~~~~~~~~~~ll~~~~~D~V~   71 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEA-AQKVVEQYQ----------LNATVYPNDDSLLADENVDAVL   71 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHH-HHHHHHHTT----------CCCEEESSHHHHHHCTTCCEEE
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHH-HHHHHHHhC----------CCCeeeCCHHHHhcCCCCCEEE
Confidence            37999999999999999983 23578877 56776543 233333221          112345799999987  89999


Q ss_pred             EeC
Q 026023          242 TLC  244 (244)
Q Consensus       242 l~~  244 (244)
                      +++
T Consensus        72 i~t   74 (344)
T 3mz0_A           72 VTS   74 (344)
T ss_dssp             ECS
T ss_pred             ECC
Confidence            864

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=97.04  E-value=0.0019  Score=56.24  Aligned_cols=67  Identities=27%  Similarity=0.300  Sum_probs=47.2

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEE-EEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--hCCEEEE
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVVCT  242 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sD~Vvl  242 (244)
                      .+|||||+|.||+..++.|.+.-++++. ++|+++.. .+++.+.+|          . ...+.+++++++  +.|+|++
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~-~~~~~~~~~----------~-~~~~~~~~~ll~~~~~D~V~i   70 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDR-LREMKEKLG----------V-EKAYKDPHELIEDPNVDAVLV   70 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHH-HHHHHHHHT----------C-SEEESSHHHHHHCTTCCEEEE
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHH-HHHHHHHhC----------C-CceeCCHHHHhcCCCCCEEEE
Confidence            3799999999999999998333478877 46877543 233333331          1 113579999999  8999998


Q ss_pred             eC
Q 026023          243 LC  244 (244)
Q Consensus       243 ~~  244 (244)
                      ++
T Consensus        71 ~t   72 (344)
T 3ezy_A           71 CS   72 (344)
T ss_dssp             CS
T ss_pred             cC
Confidence            74

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=97.03  E-value=0.001  Score=56.22  Aligned_cols=39  Identities=13%  Similarity=0.128  Sum_probs=35.1

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ++.|++++|+|.|.+|+.+++.| ...|.+|..++|+...
T Consensus       116 ~l~~k~vlViGaGg~g~a~a~~L-~~~G~~V~v~~R~~~~  154 (271)
T 1nyt_A          116 IRPGLRILLIGAGGASRGVLLPL-LSLDCAVTITNRTVSR  154 (271)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSHHH
T ss_pred             CcCCCEEEEECCcHHHHHHHHHH-HHcCCEEEEEECCHHH
Confidence            36789999999999999999998 7899999999998643

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=97.03  E-value=0.0012  Score=59.97  Aligned_cols=73  Identities=16%  Similarity=0.187  Sum_probs=49.9

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCC-----------CccccccCCHHHHh
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ-----------PVTWKRASSMDEVL  234 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~ell  234 (244)
                      -+++|+|+|.+|..+|..| ...|.+|++||+++..- +..-+.  .  ...-+.           .-......++.+.+
T Consensus         9 ~~~~vIGlG~vG~~~A~~L-a~~G~~V~~~D~~~~kv-~~l~~g--~--~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~   82 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACF-SDFGHEVVCVDKDARKI-ELLHQN--V--MPIYEPGLDALVASNVKAGRLSFTTDLAEGV   82 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCSTTH-HHHTTT--C--CSSCCTTHHHHHHHHHHTTCEEEESCHHHHH
T ss_pred             eEEEEEcCCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHhcC--C--CCccCCCHHHHHHhhcccCCEEEECCHHHHH
Confidence            4799999999999999999 57799999999997651 221100  0  000000           01123346899999


Q ss_pred             hhCCEEEEeC
Q 026023          235 READVVCTLC  244 (244)
Q Consensus       235 ~~sD~Vvl~~  244 (244)
                      ++||+|++++
T Consensus        83 ~~aDvvii~V   92 (446)
T 4a7p_A           83 KDADAVFIAV   92 (446)
T ss_dssp             TTCSEEEECC
T ss_pred             hcCCEEEEEc
Confidence            9999999874

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.02  E-value=0.00069  Score=57.81  Aligned_cols=71  Identities=23%  Similarity=0.320  Sum_probs=49.5

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      ++.|+++.|+|.|.+|+.++..| ...|+ +|..++|++.. .++..+.++..    +  .+.   ..+++++.+++|+|
T Consensus       123 ~l~~k~vlvlGaGg~g~aia~~L-~~~G~~~v~v~~R~~~~-a~~la~~~~~~----~--~~~---~~~~~~l~~~aDiI  191 (281)
T 3o8q_A          123 LLKGATILLIGAGGAARGVLKPL-LDQQPASITVTNRTFAK-AEQLAELVAAY----G--EVK---AQAFEQLKQSYDVI  191 (281)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HTTCCSEEEEEESSHHH-HHHHHHHHGGG----S--CEE---EEEGGGCCSCEEEE
T ss_pred             CccCCEEEEECchHHHHHHHHHH-HhcCCCeEEEEECCHHH-HHHHHHHhhcc----C--Cee---EeeHHHhcCCCCEE
Confidence            47899999999999999999998 78997 99999998754 23333322110    0  111   12445555789999


Q ss_pred             EEe
Q 026023          241 CTL  243 (244)
Q Consensus       241 vl~  243 (244)
                      +.+
T Consensus       192 Ina  194 (281)
T 3o8q_A          192 INS  194 (281)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            875

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.02  E-value=0.00035  Score=58.50  Aligned_cols=55  Identities=20%  Similarity=0.227  Sum_probs=42.2

Q ss_pred             HHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCc
Q 026023          139 VEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ  199 (244)
Q Consensus       139 ~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~  199 (244)
                      .+|.++++-.+|..     .....|.+++|.|+|.|.+|..+|+.| ...|. +|..+|+..
T Consensus        10 ~ry~Rq~~l~~~g~-----~~q~~l~~~~VlVvG~Gg~G~~va~~L-a~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           10 LRYNRQIILRGFDF-----DGQEALKDSRVLIVGLGGLGCAASQYL-ASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HHTHHHHTSTTTHH-----HHHHHHHHCEEEEECCSHHHHHHHHHH-HHHTCSEEEEECCCB
T ss_pred             HHhhheecccccCH-----HHHHHHhCCeEEEEeeCHHHHHHHHHH-HHcCCCeEEEEcCCC
Confidence            35566665555521     122458999999999999999999999 68898 899999986

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=96.99  E-value=0.00097  Score=58.86  Aligned_cols=76  Identities=14%  Similarity=0.197  Sum_probs=48.0

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCC-------cEEEEEcCCcc-----hHHHHHHhhhhhhhhc-CCC-CCccccccCCHH
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFK-------MNLIYYDLYQA-----TRLEKFVTAYGQFLKA-NGE-QPVTWKRASSMD  231 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG-------~~V~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~l~  231 (244)
                      ++|+|+|.|.+|..+|..|+ .-|       .+|..|+|++.     . .+.. ...+..... .+. .........++.
T Consensus        22 ~kI~iIGaG~mG~alA~~L~-~~G~~~~~~~~~V~~~~r~~~~~~~~~-~~~l-~~~~~~~~~~~~~~~~~~i~~~~~~~   98 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVG-TNAKNNYLFENEVRMWIRDEFVNGERM-VDII-NNKHENTKYLKGVPLPHNIVAHSDLA   98 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHH-HHHHHCTTBCSCEEEECCSCC---CCH-HHHH-HHHCBCTTTSTTCBCCTTEEEESSTH
T ss_pred             CEEEEECcCHHHHHHHHHHH-HcCCccCCCCCeEEEEECChhhhhHHH-HHHH-HhcCcccccCCcccCcCCeEEECCHH
Confidence            37999999999999999984 446       89999999865     2 1211 110000000 000 011223346788


Q ss_pred             HHhhhCCEEEEeC
Q 026023          232 EVLREADVVCTLC  244 (244)
Q Consensus       232 ell~~sD~Vvl~~  244 (244)
                      +.++.+|+|++++
T Consensus        99 ea~~~aDvVilav  111 (375)
T 1yj8_A           99 SVINDADLLIFIV  111 (375)
T ss_dssp             HHHTTCSEEEECC
T ss_pred             HHHcCCCEEEEcC
Confidence            9999999999875

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=96.98  E-value=0.0012  Score=60.47  Aligned_cols=76  Identities=17%  Similarity=0.240  Sum_probs=48.3

Q ss_pred             CEEEEEcCChHHHHHHHHHhcc-CCcEEEEEcCCcchHHHHHHhhh--------hhhhhcCCCCCccccccCCHHHHhhh
Q 026023          166 QTVGVIGAGRIGSAYARMMVEG-FKMNLIYYDLYQATRLEKFVTAY--------GQFLKANGEQPVTWKRASSMDEVLRE  236 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~a-fG~~V~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~ell~~  236 (244)
                      .+|+|||+|.+|..+|..|++. .|.+|+++|+++... +..-+..        .......  .........++.+.+++
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v-~~l~~g~~~i~e~gl~~~~~~~--~~~~l~~t~~~~~~~~~   86 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKI-AEWNSDKLPIYEPGLDEIVFAA--RGRNLFFSSDIPKAIAE   86 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHH-HHHTSSSCSSCCTTHHHHHHHH--BTTTEEEESCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHH-HHHHCCCCCcCCCCHHHHHHHh--hcCCEEEECCHHHHhhc
Confidence            4899999999999999998654 289999999986541 1110000        0000000  00012234577889999


Q ss_pred             CCEEEEeC
Q 026023          237 ADVVCTLC  244 (244)
Q Consensus       237 sD~Vvl~~  244 (244)
                      ||+|++++
T Consensus        87 aDvvii~V   94 (481)
T 2o3j_A           87 ADLIFISV   94 (481)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEEec
Confidence            99999974

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=96.98  E-value=0.00074  Score=56.86  Aligned_cols=67  Identities=10%  Similarity=0.102  Sum_probs=44.9

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCC--ccc-cccCCHHHHhhhCCEEEEe
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--VTW-KRASSMDEVLREADVVCTL  243 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~l~ell~~sD~Vvl~  243 (244)
                      +|+|+|.|.+|..+|..| ..-|.+|.+++|++... ++        +...+...  ... ...++ .+.++.+|+|+++
T Consensus         2 ~i~iiG~G~~G~~~a~~l-~~~g~~V~~~~r~~~~~-~~--------l~~~~~~~~~~~~~~~~~~-~~~~~~~d~vi~~   70 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTAL-CKQGHEVQGWLRVPQPY-CS--------VNLVETDGSIFNESLTAND-PDFLATSDLLLVT   70 (291)
T ss_dssp             EEEEECCSHHHHHHHHHH-HHTTCEEEEECSSCCSE-EE--------EEEECTTSCEEEEEEEESC-HHHHHTCSEEEEC
T ss_pred             eEEEECcCHHHHHHHHHH-HhCCCCEEEEEcCccce-ee--------EEEEcCCCceeeeeeeecC-ccccCCCCEEEEE
Confidence            799999999999999998 67899999999986431 11        00011000  000 01233 5778899999987


Q ss_pred             C
Q 026023          244 C  244 (244)
Q Consensus       244 ~  244 (244)
                      +
T Consensus        71 v   71 (291)
T 1ks9_A           71 L   71 (291)
T ss_dssp             S
T ss_pred             e
Confidence            5

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=96.96  E-value=0.0017  Score=56.98  Aligned_cols=66  Identities=12%  Similarity=0.140  Sum_probs=45.5

Q ss_pred             CEEEEEcCChHHHH-HHHHHhccC-CcEEE-EEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhC--CEE
Q 026023          166 QTVGVIGAGRIGSA-YARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA--DVV  240 (244)
Q Consensus       166 ~tvgIvG~G~IG~~-vA~~la~af-G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s--D~V  240 (244)
                      .++||||+|.||+. .++.+ +.. ++++. ++|+++.. .+.+.+.|       +    ....+.++++++++.  |+|
T Consensus         6 ~rigiIG~G~~g~~~~~~~l-~~~~~~~l~av~d~~~~~-~~~~a~~~-------~----~~~~~~~~~~ll~~~~vD~V   72 (359)
T 3m2t_A            6 IKVGLVGIGAQMQENLLPSL-LQMQDIRIVAACDSDLER-ARRVHRFI-------S----DIPVLDNVPAMLNQVPLDAV   72 (359)
T ss_dssp             EEEEEECCSHHHHHTHHHHH-HTCTTEEEEEEECSSHHH-HGGGGGTS-------C----SCCEESSHHHHHHHSCCSEE
T ss_pred             ceEEEECCCHHHHHHHHHHH-HhCCCcEEEEEEcCCHHH-HHHHHHhc-------C----CCcccCCHHHHhcCCCCCEE
Confidence            48999999999996 88887 555 78877 66777543 22211111       0    122357999999976  999


Q ss_pred             EEeC
Q 026023          241 CTLC  244 (244)
Q Consensus       241 vl~~  244 (244)
                      ++++
T Consensus        73 ~i~t   76 (359)
T 3m2t_A           73 VMAG   76 (359)
T ss_dssp             EECS
T ss_pred             EEcC
Confidence            9874

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=96.95  E-value=0.00019  Score=60.77  Aligned_cols=62  Identities=11%  Similarity=0.256  Sum_probs=38.6

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEE-EEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +|||||+|++|+.+++.| ..- .+| .+++|++.. .++..+.+       +     . ...+++++++++|+|++++
T Consensus         4 ~I~iIG~G~mG~~la~~l-~~~-~~v~~v~~~~~~~-~~~~~~~~-------g-----~-~~~~~~~~~~~~DvVilav   66 (276)
T 2i76_A            4 VLNFVGTGTLTRFFLECL-KDR-YEIGYILSRSIDR-ARNLAEVY-------G-----G-KAATLEKHPELNGVVFVIV   66 (276)
T ss_dssp             CCEEESCCHHHHHHHHTT-C-----CCCEECSSHHH-HHHHHHHT-------C-----C-CCCSSCCCCC---CEEECS
T ss_pred             eEEEEeCCHHHHHHHHHH-HHc-CcEEEEEeCCHHH-HHHHHHHc-------C-----C-ccCCHHHHHhcCCEEEEeC
Confidence            699999999999999998 444 788 489998643 22221111       1     1 2346777888999999874

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=96.95  E-value=0.0016  Score=59.78  Aligned_cols=35  Identities=31%  Similarity=0.584  Sum_probs=31.6

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ++|||||.|.+|..+|..| ..-|.+|..+|+++..
T Consensus         6 ~kVgVIGaG~MG~~IA~~l-a~aG~~V~l~D~~~e~   40 (483)
T 3mog_A            6 QTVAVIGSGTMGAGIAEVA-ASHGHQVLLYDISAEA   40 (483)
T ss_dssp             CCEEEECCSHHHHHHHHHH-HHTTCCEEEECSCHHH
T ss_pred             CEEEEECcCHHHHHHHHHH-HHCCCeEEEEECCHHH
Confidence            5799999999999999998 5779999999998754

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=96.94  E-value=0.00065  Score=57.87  Aligned_cols=35  Identities=23%  Similarity=0.369  Sum_probs=31.0

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .+|+|+|.|.+|..+|..| ..-|.+|.+++|++..
T Consensus         4 m~i~iiG~G~~G~~~a~~l-~~~g~~V~~~~r~~~~   38 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIML-HQGGNDVTLIDQWPAH   38 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHH
T ss_pred             CeEEEECcCHHHHHHHHHH-HhCCCcEEEEECCHHH
Confidence            3799999999999999998 6779999999998643

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=96.92  E-value=0.0029  Score=54.75  Aligned_cols=66  Identities=14%  Similarity=0.216  Sum_probs=45.6

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCC---cEEEE-EcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--hCCE
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFK---MNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADV  239 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG---~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sD~  239 (244)
                      .++||||+|.||+..++.+ +..+   +++.+ +|+++.. .+++.+.||       .   + ..+.+++++++  +.|+
T Consensus         3 ~rigiiG~G~ig~~~~~~l-~~~~~~~~~l~av~d~~~~~-a~~~a~~~~-------~---~-~~~~~~~~ll~~~~vD~   69 (334)
T 3ohs_X            3 LRWGIVSVGLISSDFTAVL-QTLPRSEHQVVAVAARDLSR-AKEFAQKHD-------I---P-KAYGSYEELAKDPNVEV   69 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHH-TTSCTTTEEEEEEECSSHHH-HHHHHHHHT-------C---S-CEESSHHHHHHCTTCCE
T ss_pred             cEEEEECchHHHHHHHHHH-HhCCCCCeEEEEEEcCCHHH-HHHHHHHcC-------C---C-cccCCHHHHhcCCCCCE
Confidence            3799999999999999987 6553   56554 5666533 344433332       1   1 13579999998  6999


Q ss_pred             EEEeC
Q 026023          240 VCTLC  244 (244)
Q Consensus       240 Vvl~~  244 (244)
                      |++++
T Consensus        70 V~i~t   74 (334)
T 3ohs_X           70 AYVGT   74 (334)
T ss_dssp             EEECC
T ss_pred             EEECC
Confidence            99864

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=96.91  E-value=0.0014  Score=57.43  Aligned_cols=67  Identities=18%  Similarity=0.200  Sum_probs=47.1

Q ss_pred             CCCEEEEEcCChHHH-HHHHHHhccC-CcEEE-EEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--hCC
Q 026023          164 KGQTVGVIGAGRIGS-AYARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EAD  238 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~-~vA~~la~af-G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sD  238 (244)
                      .-.++||||+|.||+ ..++.| +.. +++|. ++|+++.. .+++.+.||            ...+.+++++++  +.|
T Consensus        26 ~~~rigiIG~G~~g~~~~~~~l-~~~~~~~l~av~d~~~~~-~~~~a~~~g------------~~~~~~~~~ll~~~~~D   91 (350)
T 3rc1_A           26 NPIRVGVIGCADIAWRRALPAL-EAEPLTEVTAIASRRWDR-AKRFTERFG------------GEPVEGYPALLERDDVD   91 (350)
T ss_dssp             CCEEEEEESCCHHHHHTHHHHH-HHCTTEEEEEEEESSHHH-HHHHHHHHC------------SEEEESHHHHHTCTTCS
T ss_pred             CceEEEEEcCcHHHHHHHHHHH-HhCCCeEEEEEEcCCHHH-HHHHHHHcC------------CCCcCCHHHHhcCCCCC
Confidence            446899999999999 688887 555 88876 56776543 333333331            223479999997  589


Q ss_pred             EEEEeC
Q 026023          239 VVCTLC  244 (244)
Q Consensus       239 ~Vvl~~  244 (244)
                      +|++++
T Consensus        92 ~V~i~t   97 (350)
T 3rc1_A           92 AVYVPL   97 (350)
T ss_dssp             EEEECC
T ss_pred             EEEECC
Confidence            999864

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=96.89  E-value=0.0018  Score=59.29  Aligned_cols=76  Identities=14%  Similarity=0.284  Sum_probs=49.5

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCC--------CccccccCCHHHHhhhC
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--------PVTWKRASSMDEVLREA  237 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~ell~~s  237 (244)
                      .+|+|+|+|.+|..+|..| ...|.+|++||+++.. .+..-+. +.-....+..        ........++.+.++.|
T Consensus         9 ~~I~VIG~G~vG~~lA~~l-a~~G~~V~~~d~~~~~-v~~l~~~-~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~a   85 (478)
T 2y0c_A            9 MNLTIIGSGSVGLVTGACL-ADIGHDVFCLDVDQAK-IDILNNG-GVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHG   85 (478)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHH-HHHHHTT-CCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHC
T ss_pred             ceEEEECcCHHHHHHHHHH-HhCCCEEEEEECCHHH-HHHHHCC-CCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcC
Confidence            5899999999999999999 5789999999998643 1221110 0000000000        00123346788899999


Q ss_pred             CEEEEeC
Q 026023          238 DVVCTLC  244 (244)
Q Consensus       238 D~Vvl~~  244 (244)
                      |+|++++
T Consensus        86 DvviiaV   92 (478)
T 2y0c_A           86 DVQFIAV   92 (478)
T ss_dssp             SEEEECC
T ss_pred             CEEEEEe
Confidence            9999975

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=96.89  E-value=0.0034  Score=54.99  Aligned_cols=69  Identities=17%  Similarity=0.328  Sum_probs=48.3

Q ss_pred             CCEEEEEcCChHHHHHHHHHh-ccCCcEEE-EEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--hCCEE
Q 026023          165 GQTVGVIGAGRIGSAYARMMV-EGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVV  240 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la-~afG~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sD~V  240 (244)
                      -.+|||||+|.||+..++.+. +.-++++. ++|+++.. .+++.+.||          .....+.++++++.  +.|+|
T Consensus        23 ~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~-~~~~a~~~g----------~~~~~~~~~~~ll~~~~~D~V   91 (357)
T 3ec7_A           23 TLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGR-AQAALDKYA----------IEAKDYNDYHDLINDKDVEVV   91 (357)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTH-HHHHHHHHT----------CCCEEESSHHHHHHCTTCCEE
T ss_pred             eeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHH-HHHHHHHhC----------CCCeeeCCHHHHhcCCCCCEE
Confidence            458999999999999999983 23478877 57877644 233333331          11234579999998  48999


Q ss_pred             EEeC
Q 026023          241 CTLC  244 (244)
Q Consensus       241 vl~~  244 (244)
                      +++.
T Consensus        92 ~i~t   95 (357)
T 3ec7_A           92 IITA   95 (357)
T ss_dssp             EECS
T ss_pred             EEcC
Confidence            9864

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=96.88  E-value=0.0022  Score=55.49  Aligned_cols=66  Identities=11%  Similarity=0.183  Sum_probs=44.7

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEE-EEcCCcchHHHHHHhhhhhhhhcCCCCCccc-cccCCHHHHhh--hCCEEE
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTW-KRASSMDEVLR--EADVVC  241 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ell~--~sD~Vv  241 (244)
                      .++||||+|.||+..++.+.+.=++++. ++|+++... +++.+            .++. ..+.++++++.  +.|+|+
T Consensus         6 ~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~-~~~a~------------~~~~~~~~~~~~~ll~~~~~D~V~   72 (329)
T 3evn_A            6 VRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESA-QAFAN------------KYHLPKAYDKLEDMLADESIDVIY   72 (329)
T ss_dssp             EEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTT-CC---------------CCCCSCEESCHHHHHTCTTCCEEE
T ss_pred             eEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHH-HHHHH------------HcCCCcccCCHHHHhcCCCCCEEE
Confidence            4899999999999999887333367766 557776431 21111            1122 13579999998  899999


Q ss_pred             EeC
Q 026023          242 TLC  244 (244)
Q Consensus       242 l~~  244 (244)
                      +++
T Consensus        73 i~t   75 (329)
T 3evn_A           73 VAT   75 (329)
T ss_dssp             ECS
T ss_pred             ECC
Confidence            864

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=96.86  E-value=0.00092  Score=58.13  Aligned_cols=74  Identities=16%  Similarity=0.197  Sum_probs=46.3

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhc-CCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-NGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      .+|+|+|.|.+|..+|..| ..-|.+|..++|..  ..+. ....|..... ............++++ ++.+|+|++++
T Consensus         4 mkI~IiGaG~~G~~~a~~L-~~~g~~V~~~~r~~--~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vilav   78 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARL-ALAGEAINVLARGA--TLQA-LQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVAV   78 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHH-HHTTCCEEEECCHH--HHHH-HHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHH-HHCCCEEEEEEChH--HHHH-HHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEeC
Confidence            5799999999999999998 57789999999852  2222 1111111000 0000111122356777 58999999975

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=96.86  E-value=0.0022  Score=56.25  Aligned_cols=64  Identities=19%  Similarity=0.257  Sum_probs=46.5

Q ss_pred             CEEEEEcCChHHHHHHHHHhccC-CcEEEE-EcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--hCCEEE
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGF-KMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVVC  241 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~af-G~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sD~Vv  241 (244)
                      .++||||+|.||+..++.+ +.. +++|.+ +|+++...  +....+            +...+.+++++++  +.|+|+
T Consensus         6 ~~vgiiG~G~~g~~~~~~l-~~~~~~~l~av~d~~~~~~--~~a~~~------------g~~~~~~~~~ll~~~~~D~V~   70 (359)
T 3e18_A            6 YQLVIVGYGGMGSYHVTLA-SAADNLEVHGVFDILAEKR--EAAAQK------------GLKIYESYEAVLADEKVDAVL   70 (359)
T ss_dssp             EEEEEECCSHHHHHHHHHH-HTSTTEEEEEEECSSHHHH--HHHHTT------------TCCBCSCHHHHHHCTTCCEEE
T ss_pred             CcEEEECcCHHHHHHHHHH-HhCCCcEEEEEEcCCHHHH--HHHHhc------------CCceeCCHHHHhcCCCCCEEE
Confidence            5899999999999999998 566 888875 57765432  212211            2234579999998  789999


Q ss_pred             EeC
Q 026023          242 TLC  244 (244)
Q Consensus       242 l~~  244 (244)
                      +++
T Consensus        71 i~t   73 (359)
T 3e18_A           71 IAT   73 (359)
T ss_dssp             ECS
T ss_pred             EcC
Confidence            874

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=96.81  E-value=0.0005  Score=52.77  Aligned_cols=60  Identities=15%  Similarity=0.157  Sum_probs=46.5

Q ss_pred             CCEEEEEcC----ChHHHHHHHHHhccCCcEEEEEcCCc--chHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCC
Q 026023          165 GQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQ--ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (244)
Q Consensus       165 g~tvgIvG~----G~IG~~vA~~la~afG~~V~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (244)
                      -++|+|||.    |++|..+++.| +..|.+|..++|..  .+-                   .+..-+.++.|+....|
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L-~~~G~~v~~vnp~~~g~~i-------------------~G~~~~~sl~el~~~~D   72 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYL-LDQGYHVIPVSPKVAGKTL-------------------LGQQGYATLADVPEKVD   72 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHH-HHHTCCEEEECSSSTTSEE-------------------TTEECCSSTTTCSSCCS
T ss_pred             CCEEEEECcCCCCCChHHHHHHHH-HHCCCEEEEeCCccccccc-------------------CCeeccCCHHHcCCCCC
Confidence            568999999    89999999998 88899999999875  220                   11223357888888899


Q ss_pred             EEEEeC
Q 026023          239 VVCTLC  244 (244)
Q Consensus       239 ~Vvl~~  244 (244)
                      ++++++
T Consensus        73 lvii~v   78 (145)
T 2duw_A           73 MVDVFR   78 (145)
T ss_dssp             EEECCS
T ss_pred             EEEEEe
Confidence            999864

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=96.81  E-value=0.0031  Score=54.66  Aligned_cols=67  Identities=21%  Similarity=0.316  Sum_probs=45.9

Q ss_pred             CEEEEEcCChHHHHHHHHHh-ccCCcEEE-EEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--hCCEEE
Q 026023          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVVC  241 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la-~afG~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sD~Vv  241 (244)
                      .+|||||+|.||+..++.+. +.-|+++. .+|+++.. .+.+.+.+       +.   . ..+.+++++++  +.|+|+
T Consensus         9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~-~~~~a~~~-------g~---~-~~~~~~~~~l~~~~~D~V~   76 (346)
T 3cea_A            9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQ-LEWAKNEL-------GV---E-TTYTNYKDMIDTENIDAIF   76 (346)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHH-HHHHHHTT-------CC---S-EEESCHHHHHTTSCCSEEE
T ss_pred             ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHH-HHHHHHHh-------CC---C-cccCCHHHHhcCCCCCEEE
Confidence            48999999999999999973 23588865 57877643 22222222       11   0 23468999997  699999


Q ss_pred             EeC
Q 026023          242 TLC  244 (244)
Q Consensus       242 l~~  244 (244)
                      +++
T Consensus        77 i~t   79 (346)
T 3cea_A           77 IVA   79 (346)
T ss_dssp             ECS
T ss_pred             EeC
Confidence            864

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=96.79  E-value=0.0024  Score=54.27  Aligned_cols=79  Identities=15%  Similarity=0.149  Sum_probs=51.0

Q ss_pred             ccCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       162 ~l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      ++.|+++.|+| .|.||+.+++.| ...|++|..++|+... .++..+.+... .........+...+++++++++.|+|
T Consensus       116 ~l~gk~vlVtGaaGGiG~aia~~L-~~~G~~V~i~~R~~~~-~~~l~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~Dvl  192 (287)
T 1lu9_A          116 SVKGKKAVVLAGTGPVGMRSAALL-AGEGAEVVLCGRKLDK-AQAAADSVNKR-FKVNVTAAETADDASRAEAVKGAHFV  192 (287)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHH-HHTTCEEEEEESSHHH-HHHHHHHHHHH-HTCCCEEEECCSHHHHHHHTTTCSEE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHH-HHCcCEEEEEECCHHH-HHHHHHHHHhc-CCcEEEEecCCCHHHHHHHHHhCCEE
Confidence            36789999999 999999999998 6889999999998643 22222222110 00001111122223467888899999


Q ss_pred             EEe
Q 026023          241 CTL  243 (244)
Q Consensus       241 vl~  243 (244)
                      +.+
T Consensus       193 Vn~  195 (287)
T 1lu9_A          193 FTA  195 (287)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            865

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=96.79  E-value=0.0038  Score=53.82  Aligned_cols=65  Identities=18%  Similarity=0.259  Sum_probs=45.2

Q ss_pred             EEEEEcCChHHHHH-HHHHhccCCcEEE-EEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--hCCEEEE
Q 026023          167 TVGVIGAGRIGSAY-ARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVVCT  242 (244)
Q Consensus       167 tvgIvG~G~IG~~v-A~~la~afG~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sD~Vvl  242 (244)
                      +|||||+|.+|+.. ++.+.+ -|.++. .+|+++.. .+++.+.+|       .   . ..+.+++++++  ++|+|++
T Consensus         2 ~vgiiG~G~~g~~~~~~~l~~-~~~~~vav~d~~~~~-~~~~~~~~g-------~---~-~~~~~~~~~l~~~~~D~V~i   68 (332)
T 2glx_A            2 RWGLIGASTIAREWVIGAIRA-TGGEVVSMMSTSAER-GAAYATENG-------I---G-KSVTSVEELVGDPDVDAVYV   68 (332)
T ss_dssp             EEEEESCCHHHHHTHHHHHHH-TTCEEEEEECSCHHH-HHHHHHHTT-------C---S-CCBSCHHHHHTCTTCCEEEE
T ss_pred             eEEEEcccHHHHHhhhHHhhc-CCCeEEEEECCCHHH-HHHHHHHcC-------C---C-cccCCHHHHhcCCCCCEEEE
Confidence            79999999999998 777645 788876 57877643 233322221       1   1 13468999997  4999998


Q ss_pred             eC
Q 026023          243 LC  244 (244)
Q Consensus       243 ~~  244 (244)
                      ++
T Consensus        69 ~t   70 (332)
T 2glx_A           69 ST   70 (332)
T ss_dssp             CS
T ss_pred             eC
Confidence            64

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=96.73  E-value=0.0012  Score=54.07  Aligned_cols=65  Identities=15%  Similarity=0.311  Sum_probs=41.8

Q ss_pred             EEEEEcCChHHHHHHHH-HhccCCcEEE-EEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          167 TVGVIGAGRIGSAYARM-MVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~-la~afG~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +++|+|.|++|+.+++. .....|+++. ++|..+...        |.     ....+++...+++++++++.|+|++++
T Consensus        87 rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~--------g~-----~i~gv~V~~~~dl~eli~~~D~ViIAv  153 (215)
T 2vt3_A           87 DVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKI--------GT-----EVGGVPVYNLDDLEQHVKDESVAILTV  153 (215)
T ss_dssp             CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTT--------TC-----EETTEEEEEGGGHHHHCSSCCEEEECS
T ss_pred             EEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHH--------Hh-----HhcCCeeechhhHHHHHHhCCEEEEec
Confidence            69999999999999993 1245688755 566665431        00     112234445678999998789999874

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.71  E-value=0.0024  Score=52.11  Aligned_cols=72  Identities=13%  Similarity=0.172  Sum_probs=48.7

Q ss_pred             ccccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCC-C--CccccccCCHHHHhh
Q 026023          160 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE-Q--PVTWKRASSMDEVLR  235 (244)
Q Consensus       160 ~~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~l~ell~  235 (244)
                      ...+.|++|.|.|. |.||+.+++.| ..-|.+|.+++|++... ++...        .+. .  .....  +++.+.+.
T Consensus        16 ~~~l~~~~ilVtGatG~iG~~l~~~L-~~~G~~V~~~~R~~~~~-~~~~~--------~~~~~~~~~Dl~--~~~~~~~~   83 (236)
T 3e8x_A           16 NLYFQGMRVLVVGANGKVARYLLSEL-KNKGHEPVAMVRNEEQG-PELRE--------RGASDIVVANLE--EDFSHAFA   83 (236)
T ss_dssp             -----CCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSGGGH-HHHHH--------TTCSEEEECCTT--SCCGGGGT
T ss_pred             ccCcCCCeEEEECCCChHHHHHHHHH-HhCCCeEEEEECChHHH-HHHHh--------CCCceEEEcccH--HHHHHHHc
Confidence            35689999999997 99999999998 68899999999987642 11110        011 1  11111  57788899


Q ss_pred             hCCEEEEe
Q 026023          236 EADVVCTL  243 (244)
Q Consensus       236 ~sD~Vvl~  243 (244)
                      ..|+|+.+
T Consensus        84 ~~D~vi~~   91 (236)
T 3e8x_A           84 SIDAVVFA   91 (236)
T ss_dssp             TCSEEEEC
T ss_pred             CCCEEEEC
Confidence            99999864

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.71  E-value=0.002  Score=58.78  Aligned_cols=77  Identities=19%  Similarity=0.277  Sum_probs=48.5

Q ss_pred             ccccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCC--CccccccCCHHHHhhhC
Q 026023          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWKRASSMDEVLREA  237 (244)
Q Consensus       160 ~~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ell~~s  237 (244)
                      ..++.+++|+|+|.|.+|+.+++.|++.-|.+|..++|+.... ++..+.       .+..  .+.+...+++.++++.+
T Consensus        18 ~~~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka-~~la~~-------~~~~~~~~D~~d~~~l~~~l~~~   89 (467)
T 2axq_A           18 EGRHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANA-QALAKP-------SGSKAISLDVTDDSALDKVLADN   89 (467)
T ss_dssp             -----CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHH-HHHHGG-------GTCEEEECCTTCHHHHHHHHHTS
T ss_pred             ccCCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHH-HHHHHh-------cCCcEEEEecCCHHHHHHHHcCC
Confidence            3568899999999999999999998444488999999986432 221110       0110  11111223577888999


Q ss_pred             CEEEEeC
Q 026023          238 DVVCTLC  244 (244)
Q Consensus       238 D~Vvl~~  244 (244)
                      |+|+.++
T Consensus        90 DvVIn~t   96 (467)
T 2axq_A           90 DVVISLI   96 (467)
T ss_dssp             SEEEECS
T ss_pred             CEEEECC
Confidence            9998763

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=96.70  E-value=0.0018  Score=58.24  Aligned_cols=71  Identities=15%  Similarity=0.304  Sum_probs=49.8

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC  241 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv  241 (244)
                      -+.|++|+|+|-|.+|+.+++.+ +.+|.+|+.+|+++........+.       .-  ..++...+.+.++.+++|+|+
T Consensus        32 ~~~~~~IlIlG~G~lg~~~~~aa-~~lG~~v~v~d~~~~~p~~~~ad~-------~~--~~~~~d~~~l~~~a~~~D~V~  101 (419)
T 4e4t_A           32 ILPGAWLGMVGGGQLGRMFCFAA-QSMGYRVAVLDPDPASPAGAVADR-------HL--RAAYDDEAALAELAGLCEAVS  101 (419)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCTTCHHHHHSSE-------EE--CCCTTCHHHHHHHHHHCSEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEECCCCcCchhhhCCE-------EE--ECCcCCHHHHHHHHhcCCEEE
Confidence            46899999999999999999995 999999999998765432221110       00  011112234667778899987


Q ss_pred             E
Q 026023          242 T  242 (244)
Q Consensus       242 l  242 (244)
                      .
T Consensus       102 ~  102 (419)
T 4e4t_A          102 T  102 (419)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=96.70  E-value=0.062  Score=47.76  Aligned_cols=35  Identities=31%  Similarity=0.573  Sum_probs=31.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHhccCCc---EEEEEcCCc
Q 026023          164 KGQTVGVIGA-GRIGSAYARMMVEGFKM---NLIYYDLYQ  199 (244)
Q Consensus       164 ~g~tvgIvG~-G~IG~~vA~~la~afG~---~V~~~~~~~  199 (244)
                      ...+|.|+|. |+.|+.-++.+ +++|+   .|..+|++.
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a-~~lGa~~~~V~v~D~~~  251 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLL-HKVGIPDANILKWDIKE  251 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHH-HHTTCCGGGEEEECHHH
T ss_pred             CCCeEEEEcCCCHHHHHHHHHH-HhCCCCcCceEEeeccc
Confidence            4568999999 99999999996 99998   899999875

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=96.70  E-value=0.0042  Score=54.58  Aligned_cols=63  Identities=16%  Similarity=0.225  Sum_probs=44.2

Q ss_pred             CEEEEEcCChHHHH-HHHHHhccC-CcEEE-EEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--hCCEE
Q 026023          166 QTVGVIGAGRIGSA-YARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVV  240 (244)
Q Consensus       166 ~tvgIvG~G~IG~~-vA~~la~af-G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sD~V  240 (244)
                      .+|||||+|.||+. .++.+ +.. +++|. ++|+++....+.    +           .....+.+++++++  +.|+|
T Consensus         8 ~rvgiiG~G~~g~~~~~~~l-~~~~~~~l~av~d~~~~~~~~~----~-----------~~~~~~~~~~~ll~~~~~D~V   71 (364)
T 3e82_A            8 INIALIGYGFVGKTFHAPLI-RSVPGLNLAFVASRDEEKVKRD----L-----------PDVTVIASPEAAVQHPDVDLV   71 (364)
T ss_dssp             EEEEEECCSHHHHHTHHHHH-HTSTTEEEEEEECSCHHHHHHH----C-----------TTSEEESCHHHHHTCTTCSEE
T ss_pred             ceEEEECCCHHHHHHHHHHH-hhCCCeEEEEEEcCCHHHHHhh----C-----------CCCcEECCHHHHhcCCCCCEE
Confidence            48999999999997 77776 555 88876 567765331111    1           11234579999998  78999


Q ss_pred             EEeC
Q 026023          241 CTLC  244 (244)
Q Consensus       241 vl~~  244 (244)
                      +++.
T Consensus        72 ~i~t   75 (364)
T 3e82_A           72 VIAS   75 (364)
T ss_dssp             EECS
T ss_pred             EEeC
Confidence            9864

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=96.67  E-value=0.0038  Score=52.87  Aligned_cols=36  Identities=17%  Similarity=0.123  Sum_probs=33.4

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      |++++|+|.|..|+.++..| ...|.+|..++|++..
T Consensus       118 ~k~vlvlGaGGaaraia~~L-~~~G~~v~V~nRt~~k  153 (269)
T 3phh_A          118 YQNALILGAGGSAKALACEL-KKQGLQVSVLNRSSRG  153 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSCTT
T ss_pred             CCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            78999999999999999998 7899999999999765

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=96.67  E-value=0.0016  Score=56.22  Aligned_cols=74  Identities=20%  Similarity=0.192  Sum_probs=47.3

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhc--CCCCCc-cccccCCHHHHhhhCCEEEE
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA--NGEQPV-TWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~l~ell~~sD~Vvl  242 (244)
                      .+|+|+|.|.+|..+|..| ..-|.+|..++|+..+.    ....|-....  .+...+ +.....+++++.+.+|+|++
T Consensus         3 mkI~IiGaGaiG~~~a~~L-~~~g~~V~~~~r~~~~~----i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVil   77 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALL-AKTGHCVSVVSRSDYET----VKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLL   77 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHH-HHTTCEEEEECSTTHHH----HHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEE
T ss_pred             CEEEEECcCHHHHHHHHHH-HhCCCeEEEEeCChHHH----HHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEE
Confidence            4799999999999999999 56799999999976321    1111100000  011110 11223567777778999999


Q ss_pred             eC
Q 026023          243 LC  244 (244)
Q Consensus       243 ~~  244 (244)
                      ++
T Consensus        78 av   79 (320)
T 3i83_A           78 CI   79 (320)
T ss_dssp             CC
T ss_pred             ec
Confidence            75

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=96.64  E-value=0.0016  Score=55.04  Aligned_cols=39  Identities=18%  Similarity=0.145  Sum_probs=35.0

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ++.|++++|+|.|.+|+.++..| ...|.+|..++|+...
T Consensus       116 ~~~~~~vlvlGaGg~g~a~a~~L-~~~G~~v~v~~R~~~~  154 (272)
T 1p77_A          116 LRPNQHVLILGAGGATKGVLLPL-LQAQQNIVLANRTFSK  154 (272)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHH-HHTTCEEEEEESSHHH
T ss_pred             CcCCCEEEEECCcHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            47889999999999999999998 6889999999998643

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=96.64  E-value=0.0017  Score=55.84  Aligned_cols=63  Identities=22%  Similarity=0.280  Sum_probs=44.6

Q ss_pred             CEEEEEcCChHHHHHHHHHhccC-CcEEE-EEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--hCCEEE
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVVC  241 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~af-G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sD~Vv  241 (244)
                      .+|||||+|++|+..++.| ... +.++. ++|+++... +.           .... .  ..+.+++++++  ++|+|+
T Consensus        11 ~~igiIG~G~~g~~~~~~l-~~~~~~~~v~v~d~~~~~~-~~-----------~~~~-~--~~~~~~~~~l~~~~~D~V~   74 (315)
T 3c1a_A           11 VRLALIGAGRWGKNYIRTI-AGLPGAALVRLASSNPDNL-AL-----------VPPG-C--VIESDWRSVVSAPEVEAVI   74 (315)
T ss_dssp             EEEEEEECTTTTTTHHHHH-HHCTTEEEEEEEESCHHHH-TT-----------CCTT-C--EEESSTHHHHTCTTCCEEE
T ss_pred             ceEEEECCcHHHHHHHHHH-HhCCCcEEEEEEeCCHHHH-HH-----------HHhh-C--cccCCHHHHhhCCCCCEEE
Confidence            4899999999999999998 554 67755 778775431 11           0111 2  23568999996  899999


Q ss_pred             EeC
Q 026023          242 TLC  244 (244)
Q Consensus       242 l~~  244 (244)
                      +++
T Consensus        75 i~t   77 (315)
T 3c1a_A           75 IAT   77 (315)
T ss_dssp             EES
T ss_pred             EeC
Confidence            874

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=96.63  E-value=0.0026  Score=54.67  Aligned_cols=63  Identities=14%  Similarity=0.180  Sum_probs=40.5

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEE-EEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      .+|||+|+|+||+.+++.+.+.=++++. .+|+++... +.    +          .+.+..++++.++ .++|+|+++.
T Consensus        10 irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~-~~----~----------g~~~~~~~~l~~~-~~~DvViiat   73 (304)
T 3bio_A           10 IRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEV-PF----E----------LQPFRVVSDIEQL-ESVDVALVCS   73 (304)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC------------C----------CTTSCEESSGGGS-SSCCEEEECS
T ss_pred             CEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHH-HH----c----------CCCcCCHHHHHhC-CCCCEEEECC
Confidence            4899999999999999998433578887 578775431 11    1          1112234566665 7899999864

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=96.63  E-value=0.0039  Score=53.68  Aligned_cols=65  Identities=20%  Similarity=0.357  Sum_probs=42.5

Q ss_pred             EEEEEcCChHHHH-HHHHHhccC-CcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh-hhCCEEEEe
Q 026023          167 TVGVIGAGRIGSA-YARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVVCTL  243 (244)
Q Consensus       167 tvgIvG~G~IG~~-vA~~la~af-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~sD~Vvl~  243 (244)
                      ++||||+|+||+. .++.| +.. +.++.++|+++.. .+++.+.||       .   ... +.+..+++ .++|+|+++
T Consensus         4 ~igiIG~G~ig~~~~~~~l-~~~~~~~l~v~d~~~~~-~~~~a~~~g-------~---~~~-~~~~~~~l~~~~D~V~i~   70 (323)
T 1xea_A            4 KIAMIGLGDIAQKAYLPVL-AQWPDIELVLCTRNPKV-LGTLATRYR-------V---SAT-CTDYRDVLQYGVDAVMIH   70 (323)
T ss_dssp             EEEEECCCHHHHHTHHHHH-TTSTTEEEEEECSCHHH-HHHHHHHTT-------C---CCC-CSSTTGGGGGCCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHH-HhCCCceEEEEeCCHHH-HHHHHHHcC-------C---Ccc-ccCHHHHhhcCCCEEEEE
Confidence            7999999999994 88887 554 7888889988644 233333221       1   110 22334455 789999987


Q ss_pred             C
Q 026023          244 C  244 (244)
Q Consensus       244 ~  244 (244)
                      +
T Consensus        71 t   71 (323)
T 1xea_A           71 A   71 (323)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=96.63  E-value=0.0059  Score=53.42  Aligned_cols=69  Identities=19%  Similarity=0.195  Sum_probs=46.2

Q ss_pred             CEEEEEcCChHHHHHHHHHhccC-CcEEE-EEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--hCCEEE
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVVC  241 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~af-G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sD~Vv  241 (244)
                      .++||||+|.||+..++.+ +.. ++++. .+|+++.. .+++.+.||       ... ....+.+++++++  +.|+|+
T Consensus         7 ~~vgiiG~G~ig~~~~~~l-~~~~~~~lv~v~d~~~~~-~~~~a~~~~-------~~~-~~~~~~~~~~ll~~~~~D~V~   76 (362)
T 1ydw_A            7 IRIGVMGCADIARKVSRAI-HLAPNATISGVASRSLEK-AKAFATANN-------YPE-STKIHGSYESLLEDPEIDALY   76 (362)
T ss_dssp             EEEEEESCCTTHHHHHHHH-HHCTTEEEEEEECSSHHH-HHHHHHHTT-------CCT-TCEEESSHHHHHHCTTCCEEE
T ss_pred             eEEEEECchHHHHHHHHHH-hhCCCcEEEEEEcCCHHH-HHHHHHHhC-------CCC-CCeeeCCHHHHhcCCCCCEEE
Confidence            4899999999999999987 454 67765 56776543 233333331       100 1223478999997  599999


Q ss_pred             EeC
Q 026023          242 TLC  244 (244)
Q Consensus       242 l~~  244 (244)
                      +++
T Consensus        77 i~t   79 (362)
T 1ydw_A           77 VPL   79 (362)
T ss_dssp             ECC
T ss_pred             EcC
Confidence            874

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=96.61  E-value=0.0071  Score=51.89  Aligned_cols=66  Identities=17%  Similarity=0.279  Sum_probs=45.3

Q ss_pred             CEEEEEcCChHHHH-HHHHHhccCCcEEE-EEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          166 QTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       166 ~tvgIvG~G~IG~~-vA~~la~afG~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      .+|||||+|.||+. +++.+.+.-|+++. ++|+++.. .+++.+.+|          .+  .+++++++..+.|+|+++
T Consensus         6 ~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~-~~~~~~~~g----------~~--~~~~~~~l~~~~D~V~i~   72 (319)
T 1tlt_A            6 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAK-ALPICESWR----------IP--YADSLSSLAASCDAVFVH   72 (319)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTT-HHHHHHHHT----------CC--BCSSHHHHHTTCSEEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHH-HHHHHHHcC----------CC--ccCcHHHhhcCCCEEEEe
Confidence            48999999999997 88876333478876 78887654 233322221          11  346788887789999986


Q ss_pred             C
Q 026023          244 C  244 (244)
Q Consensus       244 ~  244 (244)
                      +
T Consensus        73 t   73 (319)
T 1tlt_A           73 S   73 (319)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=96.61  E-value=0.0025  Score=54.41  Aligned_cols=31  Identities=19%  Similarity=0.387  Sum_probs=27.8

Q ss_pred             CEEEEEcCChHHHHHHHHHhccC-----C-cEEEEEcC
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGF-----K-MNLIYYDL  197 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~af-----G-~~V~~~~~  197 (244)
                      .+|+|+|.|.+|..+|..|+ .-     | .+|.+++|
T Consensus         9 m~I~iiG~G~mG~~~a~~L~-~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLA-LRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHH-HHHHHTTSSEEEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHH-hCccccCCCCCEEEEEc
Confidence            47999999999999999984 44     8 89999998

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=96.61  E-value=0.0031  Score=56.04  Aligned_cols=79  Identities=16%  Similarity=0.107  Sum_probs=46.4

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch--HHHHHHhhhhhhhh--cCCC---C-Ccccc-ccCCHHHHhhh
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT--RLEKFVTAYGQFLK--ANGE---Q-PVTWK-RASSMDEVLRE  236 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~--~~~~~~~~~~~~~~--~~~~---~-~~~~~-~~~~l~ell~~  236 (244)
                      .+|+|+|.|.+|..+|..|++.-|.+|..++++.+.  ..+...+..|....  ..+.   . ..... ...++++.++.
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   82 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAISG   82 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHTT
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhCC
Confidence            379999999999999999843259999999933321  11211111000000  0000   0 00111 23578899999


Q ss_pred             CCEEEEeC
Q 026023          237 ADVVCTLC  244 (244)
Q Consensus       237 sD~Vvl~~  244 (244)
                      +|+|++++
T Consensus        83 aD~Vilav   90 (404)
T 3c7a_A           83 ADVVILTV   90 (404)
T ss_dssp             CSEEEECS
T ss_pred             CCEEEEeC
Confidence            99999875

>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A

Probab=96.59  E-value=0.018  Score=49.65  Aligned_cols=110  Identities=16%  Similarity=0.080  Sum_probs=69.4

Q ss_pred             HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCC--hHHHHHHH
Q 026023          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG--RIGSAYAR  182 (244)
Q Consensus       105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G--~IG~~vA~  182 (244)
                      ++-.+|+|.|..+.+..|+=-.+=.+.+.  +..         |             .+.|.+|+++|=|  ++..+++.
T Consensus       112 A~~~~vPVINa~~~~~HPtQaLaDl~Ti~--e~~---------g-------------~l~gl~va~vGD~~~rva~Sl~~  167 (307)
T 2i6u_A          112 ASVATVPVINALSDEFHPCQVLADLQTIA--ERK---------G-------------ALRGLRLSYFGDGANNMAHSLLL  167 (307)
T ss_dssp             HHHCSSCEEESCCSSCCHHHHHHHHHHHH--HHH---------S-------------CCTTCEEEEESCTTSHHHHHHHH
T ss_pred             HhhCCCCEEcCCCCCcCccHHHHHHHHHH--HHh---------C-------------CcCCeEEEEECCCCcCcHHHHHH
Confidence            33457999998776655553333333332  211         1             3789999999986  99999999


Q ss_pred             HHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       183 ~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      .+ .-||++|....|..-...++..+.........+   ..+....+++|.++.+|+|..
T Consensus       168 ~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G---~~~~~~~d~~eav~~aDvvy~  223 (307)
T 2i6u_A          168 GG-VTAGIHVTVAAPEGFLPDPSVRAAAERRAQDTG---ASVTVTADAHAAAAGADVLVT  223 (307)
T ss_dssp             HH-HHTTCEEEEECCTTSCCCHHHHHHHHHHHHHHT---CCEEEESCHHHHHTTCSEEEE
T ss_pred             HH-HHCCCEEEEECCccccCCHHHHHHHHHHHHHcC---CeEEEEECHHHHhcCCCEEEe
Confidence            97 789999999999753221222110000000111   123345799999999999975

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=96.57  E-value=0.0024  Score=53.24  Aligned_cols=55  Identities=18%  Similarity=0.252  Sum_probs=39.8

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEE-EcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC  241 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv  241 (244)
                      .+|+|+|+|++|+.+++.+ ..-+-++.+ +|+.....                   .++..++++++++ ++|+|+
T Consensus         4 mkI~ViGaGrMG~~i~~~l-~~~~~eLva~~d~~~~~~-------------------~gv~v~~dl~~l~-~~DVvI   59 (243)
T 3qy9_A            4 MKILLIGYGAMNQRVARLA-EEKGHEIVGVIENTPKAT-------------------TPYQQYQHIADVK-GADVAI   59 (243)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEEECSSCC---------------------CCSCBCSCTTTCT-TCSEEE
T ss_pred             eEEEEECcCHHHHHHHHHH-HhCCCEEEEEEecCcccc-------------------CCCceeCCHHHHh-CCCEEE
Confidence            4799999999999999997 555447665 78765421                   1222346888888 999987

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=96.56  E-value=0.0028  Score=54.82  Aligned_cols=61  Identities=15%  Similarity=0.282  Sum_probs=43.3

Q ss_pred             CEEEEEcCChHHHHHHHHHhccC-CcEEE-EEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~af-G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      .+|||+|+|++|+.+++.+ ... ++++. .+|+++...       +       .   .++..+.++++++.++|+|+++
T Consensus         4 irV~IiG~G~mG~~~~~~l-~~~~~~elvav~d~~~~~~-------~-------~---~gv~~~~d~~~ll~~~DvViia   65 (320)
T 1f06_A            4 IRVAIVGYGNLGRSVEKLI-AKQPDMDLVGIFSRRATLD-------T-------K---TPVFDVADVDKHADDVDVLFLC   65 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHH-TTCSSEEEEEEEESSSCCS-------S-------S---SCEEEGGGGGGTTTTCSEEEEC
T ss_pred             CEEEEEeecHHHHHHHHHH-hcCCCCEEEEEEcCCHHHh-------h-------c---CCCceeCCHHHHhcCCCEEEEc
Confidence            3799999999999999998 555 78754 677764321       0       0   1222346788888899999986


Q ss_pred             C
Q 026023          244 C  244 (244)
Q Consensus       244 ~  244 (244)
                      .
T Consensus        66 t   66 (320)
T 1f06_A           66 M   66 (320)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=96.54  E-value=0.0044  Score=56.69  Aligned_cols=34  Identities=18%  Similarity=0.387  Sum_probs=30.8

Q ss_pred             CEEEEEcCChHHHHHHHHHhccC-Cc-EEEEEcCCcc
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGF-KM-NLIYYDLYQA  200 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~af-G~-~V~~~~~~~~  200 (244)
                      ++|+|+|+|.+|..+|..|+ .. |. +|++||+++.
T Consensus        19 mkIaVIGlG~mG~~lA~~la-~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFA-DAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHH-HSTTCCEEEEECCCCT
T ss_pred             CEEEEECcCHHHHHHHHHHH-HhCCCCeEEEEECChh
Confidence            48999999999999999995 55 89 9999999976

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=96.54  E-value=0.0062  Score=55.43  Aligned_cols=36  Identities=19%  Similarity=0.330  Sum_probs=32.0

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      -++|+|||.|.+|..+|..| ..-|.+|+.+|+++..
T Consensus        37 ~~kV~VIGaG~MG~~iA~~l-a~~G~~V~l~D~~~~~   72 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISF-ARVGISVVAVESDPKQ   72 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHH-HTTTCEEEEECSSHHH
T ss_pred             CCEEEEECcCHHHHHHHHHH-HhCCCeEEEEECCHHH
Confidence            35899999999999999998 5789999999998743

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=96.53  E-value=0.0056  Score=52.69  Aligned_cols=75  Identities=16%  Similarity=0.188  Sum_probs=47.1

Q ss_pred             EEEEEcCChHHHHHHHHHhcc-CCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          167 TVGVIGAGRIGSAYARMMVEG-FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~a-fG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +|+|+|.|.+|..+|..|++. +|.+|..+|+.+... +.....+....... ..........++++ ++.||+|++++
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~-~~~~~~l~~~~~~~-~~~~~i~~t~d~~~-l~~aDvViiav   77 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIP-QGKALDMYESGPVG-LFDTKVTGSNDYAD-TANSDIVIITA   77 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHH-HHHHHHHHTTHHHH-TCCCEEEEESCGGG-GTTCSEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHH-HHHHHhHHhhhhcc-cCCcEEEECCCHHH-HCCCCEEEEeC
Confidence            799999999999999998543 689999999986532 11110000000000 01112223357777 99999999864

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=96.52  E-value=0.0055  Score=53.45  Aligned_cols=63  Identities=14%  Similarity=0.153  Sum_probs=44.1

Q ss_pred             CEEEEEcCChHHHH-HHHHHhccC-CcEEE-EEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhh--CCEE
Q 026023          166 QTVGVIGAGRIGSA-YARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVV  240 (244)
Q Consensus       166 ~tvgIvG~G~IG~~-vA~~la~af-G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--sD~V  240 (244)
                      .++||||+|.||+. .++.+ +.. +++|. .+|+++... ++              .......+.++++++..  .|+|
T Consensus         8 ~rvgiiG~G~~g~~~~~~~~-~~~~~~~l~av~d~~~~~~-~~--------------~~~~~~~~~~~~~ll~~~~vD~V   71 (352)
T 3kux_A            8 IKVGLLGYGYASKTFHAPLI-MGTPGLELAGVSSSDASKV-HA--------------DWPAIPVVSDPQMLFNDPSIDLI   71 (352)
T ss_dssp             EEEEEECCSHHHHHTHHHHH-HTSTTEEEEEEECSCHHHH-HT--------------TCSSCCEESCHHHHHHCSSCCEE
T ss_pred             ceEEEECCCHHHHHHHHHHH-hhCCCcEEEEEECCCHHHH-Hh--------------hCCCCceECCHHHHhcCCCCCEE
Confidence            48999999999997 78876 555 78876 566665331 11              01122345799999987  8999


Q ss_pred             EEeC
Q 026023          241 CTLC  244 (244)
Q Consensus       241 vl~~  244 (244)
                      +++.
T Consensus        72 ~i~t   75 (352)
T 3kux_A           72 VIPT   75 (352)
T ss_dssp             EECS
T ss_pred             EEeC
Confidence            9863

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=96.51  E-value=0.0039  Score=53.76  Aligned_cols=77  Identities=22%  Similarity=0.331  Sum_probs=44.8

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhc-CCCCCccccccCCHHHHhhhCCEEE
Q 026023          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-NGEQPVTWKRASSMDEVLREADVVC  241 (244)
Q Consensus       163 l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~ell~~sD~Vv  241 (244)
                      ...++|+|+|.|.+|..+|..| ..-|.+|..+ +++.. .+.. ...|..... ............++++ ++.+|+|+
T Consensus        17 ~~~~kI~IiGaGa~G~~~a~~L-~~~G~~V~l~-~~~~~-~~~i-~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vi   91 (318)
T 3hwr_A           17 FQGMKVAIMGAGAVGCYYGGML-ARAGHEVILI-ARPQH-VQAI-EATGLRLETQSFDEQVKVSASSDPSA-VQGADLVL   91 (318)
T ss_dssp             ---CEEEEESCSHHHHHHHHHH-HHTTCEEEEE-CCHHH-HHHH-HHHCEEEECSSCEEEECCEEESCGGG-GTTCSEEE
T ss_pred             ccCCcEEEECcCHHHHHHHHHH-HHCCCeEEEE-EcHhH-HHHH-HhCCeEEEcCCCcEEEeeeeeCCHHH-cCCCCEEE
Confidence            4567999999999999999999 5679999999 65432 2221 111110000 0000111122345655 58999999


Q ss_pred             EeC
Q 026023          242 TLC  244 (244)
Q Consensus       242 l~~  244 (244)
                      +++
T Consensus        92 lav   94 (318)
T 3hwr_A           92 FCV   94 (318)
T ss_dssp             ECC
T ss_pred             EEc
Confidence            875

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=96.50  E-value=0.0068  Score=52.80  Aligned_cols=76  Identities=22%  Similarity=0.264  Sum_probs=43.6

Q ss_pred             EEEEEcCChHHHHHHHHHhccC-CcEEEEEc-CCcchHHHHHHhhhh-hhhhcCCCC-----CccccccCCHHHHhhhCC
Q 026023          167 TVGVIGAGRIGSAYARMMVEGF-KMNLIYYD-LYQATRLEKFVTAYG-QFLKANGEQ-----PVTWKRASSMDEVLREAD  238 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~af-G~~V~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~l~ell~~sD  238 (244)
                      +|||+|+|.||+.+++.| ... ++++.++. ++++ ......+.+| +...+....     .-......+.++++.+.|
T Consensus         4 rVgIiG~G~iG~~~~r~l-~~~~~~elvav~d~~~~-~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vD   81 (334)
T 2czc_A            4 KVGVNGYGTIGKRVAYAV-TKQDDMELIGITKTKPD-FEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVD   81 (334)
T ss_dssp             EEEEECCSHHHHHHHHHH-HTCTTEEEEEEEESSCS-HHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCS
T ss_pred             EEEEEeEhHHHHHHHHHH-hcCCCCEEEEEEcCCHH-HHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCCC
Confidence            799999999999999998 444 67876654 4432 2222222111 000000000     000112357999999999


Q ss_pred             EEEEeC
Q 026023          239 VVCTLC  244 (244)
Q Consensus       239 ~Vvl~~  244 (244)
                      +|+.+.
T Consensus        82 vV~~aT   87 (334)
T 2czc_A           82 IIVDAT   87 (334)
T ss_dssp             EEEECC
T ss_pred             EEEECC
Confidence            999863

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=96.50  E-value=0.0033  Score=54.04  Aligned_cols=73  Identities=15%  Similarity=0.222  Sum_probs=45.2

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcC-CCCCc-cccccCCHHHHhhhCCEEEEe
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-GEQPV-TWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      .+|+|+|.|.+|..+|..| ..-|.+|..++|+..+   . ....|-..... +.... +.....+.++ ++.+|+|+++
T Consensus         3 mkI~IiGaGaiG~~~a~~L-~~~g~~V~~~~r~~~~---~-i~~~g~~~~~~~g~~~~~~~~~~~~~~~-~~~~D~vila   76 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALL-QRSGEDVHFLLRRDYE---A-IAGNGLKVFSINGDFTLPHVKGYRAPEE-IGPMDLVLVG   76 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHH-HHTSCCEEEECSTTHH---H-HHHTCEEEEETTCCEEESCCCEESCHHH-HCCCSEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHH-HHCCCeEEEEEcCcHH---H-HHhCCCEEEcCCCeEEEeeceeecCHHH-cCCCCEEEEe
Confidence            4799999999999999999 5678999999997522   1 11111111100 11100 1112245655 6899999997


Q ss_pred             C
Q 026023          244 C  244 (244)
Q Consensus       244 ~  244 (244)
                      +
T Consensus        77 v   77 (312)
T 3hn2_A           77 L   77 (312)
T ss_dssp             C
T ss_pred             c
Confidence            5

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=96.50  E-value=0.0062  Score=53.32  Aligned_cols=69  Identities=20%  Similarity=0.333  Sum_probs=44.0

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhccC--------CcEEEE-EcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHH
Q 026023          163 LKGQTVGVIGAGRIGSAYARMMVEGF--------KMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV  233 (244)
Q Consensus       163 l~g~tvgIvG~G~IG~~vA~~la~af--------G~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  233 (244)
                      .+--+|||||+|.||+.-++.+ +.+        +++|.+ +|+++.. .+++.+.||          ++ ..+.+++++
T Consensus        23 MkkirvgiIG~G~ig~~H~~a~-~~~~~~~~~~~~~~lvav~d~~~~~-a~~~a~~~g----------~~-~~y~d~~el   89 (393)
T 4fb5_A           23 MKPLGIGLIGTGYMGKCHALAW-NAVKTVFGDVERPRLVHLAEANAGL-AEARAGEFG----------FE-KATADWRAL   89 (393)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHH-TTHHHHHCSSCCCEEEEEECC--TT-HHHHHHHHT----------CS-EEESCHHHH
T ss_pred             CCCccEEEEcCCHHHHHHHHHH-HhhhhhhccCCCcEEEEEECCCHHH-HHHHHHHhC----------CC-eecCCHHHH
Confidence            3446899999999999877665 443        567665 4655533 344444442          11 235799999


Q ss_pred             hhh--CCEEEEeC
Q 026023          234 LRE--ADVVCTLC  244 (244)
Q Consensus       234 l~~--sD~Vvl~~  244 (244)
                      |++  .|+|+++.
T Consensus        90 l~~~~iDaV~Iat  102 (393)
T 4fb5_A           90 IADPEVDVVSVTT  102 (393)
T ss_dssp             HHCTTCCEEEECS
T ss_pred             hcCCCCcEEEECC
Confidence            975  68898863

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=96.48  E-value=0.0082  Score=52.09  Aligned_cols=66  Identities=17%  Similarity=0.223  Sum_probs=44.4

Q ss_pred             EEEEEcCChHHHH-HHHHHhccCCcEEEE-EcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhh--CCEEEE
Q 026023          167 TVGVIGAGRIGSA-YARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVVCT  242 (244)
Q Consensus       167 tvgIvG~G~IG~~-vA~~la~afG~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--sD~Vvl  242 (244)
                      ++||||+|.||+. .+..+.+.=+++|.+ +|+++. ..+++.+.||          ++ ..+.+++++|+.  .|+|++
T Consensus        25 rigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~-~a~~~a~~~g----------~~-~~y~d~~ell~~~~iDaV~I   92 (350)
T 4had_A           25 RFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLT-RAREMADRFS----------VP-HAFGSYEEMLASDVIDAVYI   92 (350)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHH-HHHHHHHHHT----------CS-EEESSHHHHHHCSSCSEEEE
T ss_pred             EEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHH-HHHHHHHHcC----------CC-eeeCCHHHHhcCCCCCEEEE
Confidence            8999999999986 566653344788875 566653 3344444442          11 135799999965  799988


Q ss_pred             eC
Q 026023          243 LC  244 (244)
Q Consensus       243 ~~  244 (244)
                      +.
T Consensus        93 ~t   94 (350)
T 4had_A           93 PL   94 (350)
T ss_dssp             CS
T ss_pred             eC
Confidence            63

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=96.48  E-value=0.007  Score=54.87  Aligned_cols=69  Identities=14%  Similarity=0.157  Sum_probs=53.1

Q ss_pred             cccCCCEEEEEcCC----------hHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCH
Q 026023          161 NLLKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (244)
Q Consensus       161 ~~l~g~tvgIvG~G----------~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (244)
                      ..+.|++|+|+|+.          .-...+++.| ...|++|.+|||...+....   .|           -+....+++
T Consensus       318 ~~~~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L-~~~g~~v~~~DP~~~~~~~~---~~-----------~~~~~~~~~  382 (446)
T 4a7p_A          318 GDVRGKTVGILGLTFKPNTDDMRDAPSLSIIAAL-QDAGATVKAYDPEGVEQASK---ML-----------TDVEFVENP  382 (446)
T ss_dssp             SCCTTCEEEEECCSSSTTSCCCTTCSHHHHHHHH-HHTSCEEEEECSSCHHHHGG---GC-----------SSCCBCSCH
T ss_pred             ccCCCCEEEEEEEEeCCCCcccccChHHHHHHHH-HHCCCEEEEECCCCCHhHHH---hc-----------CCceEecCh
Confidence            35899999999997          6788999999 89999999999987532111   01           022345689


Q ss_pred             HHHhhhCCEEEEeC
Q 026023          231 DEVLREADVVCTLC  244 (244)
Q Consensus       231 ~ell~~sD~Vvl~~  244 (244)
                      ++.++.+|.|++.+
T Consensus       383 ~~~~~~ad~vvi~t  396 (446)
T 4a7p_A          383 YAAADGADALVIVT  396 (446)
T ss_dssp             HHHHTTBSEEEECS
T ss_pred             hHHhcCCCEEEEee
Confidence            99999999999863

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=96.47  E-value=0.0058  Score=53.53  Aligned_cols=63  Identities=13%  Similarity=0.278  Sum_probs=43.8

Q ss_pred             CEEEEEcCChHHHH-HHHHHhccC-CcEEE-EEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--hCCEE
Q 026023          166 QTVGVIGAGRIGSA-YARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVV  240 (244)
Q Consensus       166 ~tvgIvG~G~IG~~-vA~~la~af-G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sD~V  240 (244)
                      .++||||+|.||+. .++.+ +.. +++|. ++|+++.. ..+   .+       .    ....+.+++++++  +.|+|
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l-~~~~~~~l~av~d~~~~~-~~~---~~-------~----~~~~~~~~~~ll~~~~vD~V   69 (358)
T 3gdo_A            6 IKVGILGYGLSGSVFHGPLL-DVLDEYQISKIMTSRTEE-VKR---DF-------P----DAEVVHELEEITNDPAIELV   69 (358)
T ss_dssp             EEEEEECCSHHHHHTTHHHH-TTCTTEEEEEEECSCHHH-HHH---HC-------T----TSEEESSTHHHHTCTTCCEE
T ss_pred             ceEEEEccCHHHHHHHHHHH-hhCCCeEEEEEEcCCHHH-HHh---hC-------C----CCceECCHHHHhcCCCCCEE
Confidence            48999999999997 68876 555 78876 55666532 111   11       0    1234579999998  78999


Q ss_pred             EEeC
Q 026023          241 CTLC  244 (244)
Q Consensus       241 vl~~  244 (244)
                      +++.
T Consensus        70 ~i~t   73 (358)
T 3gdo_A           70 IVTT   73 (358)
T ss_dssp             EECS
T ss_pred             EEcC
Confidence            9864

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=96.47  E-value=0.0097  Score=51.75  Aligned_cols=77  Identities=19%  Similarity=0.299  Sum_probs=49.6

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      ..+|+|+|.|.+|..+|..|+ .-|. +|..+|+..... +.....+....... ..........++++.++.||+|++.
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la-~~g~~~V~L~D~~~~~~-~~~~~~l~~~~~~~-~~~~~i~~t~d~~ea~~~aDiVi~a   85 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCA-LRELADVVLYDVVKGMP-EGKALDLSHVTSVV-DTNVSVRAEYSYEAALTGADCVIVT   85 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-HHTCCEEEEECSSSSHH-HHHHHHHHHHHHHT-TCCCCEEEECSHHHHHTTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHH-hCCCCeEEEEECChhHH-HHHHHHHHhhhhcc-CCCCEEEEeCCHHHHhCCCCEEEEc
Confidence            358999999999999999984 5676 899999986432 11111000001101 1122233347899899999999986


Q ss_pred             C
Q 026023          244 C  244 (244)
Q Consensus       244 ~  244 (244)
                      .
T Consensus        86 ~   86 (331)
T 1pzg_A           86 A   86 (331)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=96.46  E-value=0.0043  Score=56.01  Aligned_cols=38  Identities=26%  Similarity=0.410  Sum_probs=32.2

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       163 l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      -.|.++.|+|+|.+|..+|..| ...|.+|++||+++..
T Consensus         9 ~~~~~~~ViGlGyvGlp~A~~L-a~~G~~V~~~D~~~~k   46 (431)
T 3ojo_A            9 HHGSKLTVVGLGYIGLPTSIMF-AKHGVDVLGVDINQQT   46 (431)
T ss_dssp             ---CEEEEECCSTTHHHHHHHH-HHTTCEEEEECSCHHH
T ss_pred             ccCCccEEEeeCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            4788999999999999999999 4779999999999754

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.46  E-value=0.004  Score=52.80  Aligned_cols=70  Identities=23%  Similarity=0.380  Sum_probs=46.1

Q ss_pred             CEEEEEc-CChHHHHHHHHHhccCCcEEEE-EcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       166 ~tvgIvG-~G~IG~~vA~~la~afG~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      .+|+|+| +|++|+.+++.+...=++++.+ ++++..+..-.   ..+...   +... ++...+++++++.++|+|+-
T Consensus         8 ikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~---d~gel~---g~~~-gv~v~~dl~~ll~~~DVVID   79 (272)
T 4f3y_A            8 MKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQ---DAGAFL---GKQT-GVALTDDIERVCAEADYLID   79 (272)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTS---BTTTTT---TCCC-SCBCBCCHHHHHHHCSEEEE
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccc---cHHHHh---CCCC-CceecCCHHHHhcCCCEEEE
Confidence            4899999 9999999999875566888877 67764321000   001111   1111 33345799999999999985

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.45  E-value=0.0017  Score=52.77  Aligned_cols=34  Identities=21%  Similarity=0.167  Sum_probs=31.1

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ++.|+|+|++|+.+|+.| ...|.+|.++++++..
T Consensus         2 ~iiIiG~G~~G~~la~~L-~~~g~~v~vid~~~~~   35 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSM-LSRKYGVVIINKDREL   35 (218)
T ss_dssp             CEEEECCHHHHHHHHHHH-HHTTCCEEEEESCHHH
T ss_pred             EEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHH
Confidence            589999999999999998 7899999999998754

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=96.44  E-value=0.0066  Score=52.63  Aligned_cols=76  Identities=11%  Similarity=0.182  Sum_probs=49.1

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHh----hhhhhhhcCCC-CC-------ccccccCCHH
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT----AYGQFLKANGE-QP-------VTWKRASSMD  231 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~-------~~~~~~~~l~  231 (244)
                      .-.+|+|||.|.+|..+|..+ -.-|++|..+|+++... +...+    .+.....+... ..       -......++.
T Consensus         5 ~~~~VaViGaG~MG~giA~~~-a~~G~~V~l~D~~~~~l-~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~   82 (319)
T 3ado_A            5 AAGDVLIVGSGLVGRSWAMLF-ASGGFRVKLYDIEPRQI-TGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLA   82 (319)
T ss_dssp             --CEEEEECCSHHHHHHHHHH-HHTTCCEEEECSCHHHH-HHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHH
T ss_pred             CCCeEEEECCcHHHHHHHHHH-HhCCCeEEEEECCHHHH-HHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchH
Confidence            346899999999999999998 58899999999987542 11111    11111111000 00       0123456899


Q ss_pred             HHhhhCCEEE
Q 026023          232 EVLREADVVC  241 (244)
Q Consensus       232 ell~~sD~Vv  241 (244)
                      +.++.||+|+
T Consensus        83 ~a~~~ad~Vi   92 (319)
T 3ado_A           83 EAVEGVVHIQ   92 (319)
T ss_dssp             HHTTTEEEEE
T ss_pred             hHhccCcEEe
Confidence            9999999987

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=96.43  E-value=0.0097  Score=52.80  Aligned_cols=74  Identities=16%  Similarity=0.271  Sum_probs=51.8

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCC----cchH---HHHHHhhhhhhhhcCCCCCccccccCCHHH
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY----QATR---LEKFVTAYGQFLKANGEQPVTWKRASSMDE  232 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e  232 (244)
                      ..+.+.+|.|+|.|..|..+|+.| ...|. +|..+|++    ....   ..++-+.|.   ....  .  .....+|.|
T Consensus       188 ~~l~~~kVVv~GAGaAG~~iAkll-~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A---~~~~--~--~~~~~~L~e  259 (388)
T 1vl6_A          188 KKIEEVKVVVNGIGAAGYNIVKFL-LDLGVKNVVAVDRKGILNENDPETCLNEYHLEIA---RITN--P--ERLSGDLET  259 (388)
T ss_dssp             CCTTTCEEEEECCSHHHHHHHHHH-HHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHH---HTSC--T--TCCCSCHHH
T ss_pred             CCCCCcEEEEECCCHHHHHHHHHH-HhCCCCeEEEEECCCcccCCCcccccCHHHHHHH---Hhhh--c--cCchhhHHH
Confidence            358899999999999999999998 89999 89999998    2111   111111121   1111  1  113468999


Q ss_pred             HhhhCCEEEE
Q 026023          233 VLREADVVCT  242 (244)
Q Consensus       233 ll~~sD~Vvl  242 (244)
                      .++.+|+++-
T Consensus       260 av~~ADVlIG  269 (388)
T 1vl6_A          260 ALEGADFFIG  269 (388)
T ss_dssp             HHTTCSEEEE
T ss_pred             HHccCCEEEE
Confidence            9999999874

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=96.42  E-value=0.0041  Score=56.33  Aligned_cols=37  Identities=24%  Similarity=0.277  Sum_probs=34.6

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~  199 (244)
                      ++.|++|.|+|.|.+|..+|+.| +..|.+|.++|.+.
T Consensus         6 ~~~~k~v~viG~G~sG~s~A~~l-~~~G~~V~~~D~~~   42 (451)
T 3lk7_A            6 TFENKKVLVLGLARSGEAAARLL-AKLGAIVTVNDGKP   42 (451)
T ss_dssp             TTTTCEEEEECCTTTHHHHHHHH-HHTTCEEEEEESSC
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHH-HhCCCEEEEEeCCc
Confidence            47899999999999999999998 89999999999975

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.42  E-value=0.0025  Score=57.21  Aligned_cols=35  Identities=20%  Similarity=0.302  Sum_probs=32.1

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .+|.|+|+|++|+.+++.| +..|..|+++|+.+..
T Consensus         5 ~~viIiG~Gr~G~~va~~L-~~~g~~vvvId~d~~~   39 (413)
T 3l9w_A            5 MRVIIAGFGRFGQITGRLL-LSSGVKMVVLDHDPDH   39 (413)
T ss_dssp             CSEEEECCSHHHHHHHHHH-HHTTCCEEEEECCHHH
T ss_pred             CeEEEECCCHHHHHHHHHH-HHCCCCEEEEECCHHH
Confidence            4699999999999999998 8999999999998754

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=96.42  E-value=0.0031  Score=57.30  Aligned_cols=74  Identities=11%  Similarity=0.148  Sum_probs=48.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      .+++|+|+|.|.||+.+++.| ..-|.+|..++|+... .++..+.++    ............+++.++++.+|+|+.+
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L-~~~G~~V~v~~R~~~~-a~~la~~~~----~~~~~~~Dv~d~~~l~~~l~~~DvVIn~   75 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVL-TDSGIKVTVACRTLES-AKKLSAGVQ----HSTPISLDVNDDAALDAEVAKHDLVISL   75 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHH-HTTTCEEEEEESSHHH-HHHTTTTCT----TEEEEECCTTCHHHHHHHHTTSSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HhCcCEEEEEECCHHH-HHHHHHhcC----CceEEEeecCCHHHHHHHHcCCcEEEEC
Confidence            468999999999999999998 6789999999998643 122111110    0000001111223567889999999875

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=96.42  E-value=0.0037  Score=47.76  Aligned_cols=60  Identities=12%  Similarity=0.113  Sum_probs=46.4

Q ss_pred             CCEEEEEcC----ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          165 GQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       165 g~tvgIvG~----G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      -++|+|||.    |++|..+++.| +..|.+|..+++...+ .                  .+..-+.+++|+....|++
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l-~~~G~~v~~Vnp~~~~-i------------------~G~~~y~sl~~l~~~vDlv   81 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYL-LEHGYDVYPVNPKYEE-V------------------LGRKCYPSVLDIPDKIEVV   81 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHH-HHTTCEEEEECTTCSE-E------------------TTEECBSSGGGCSSCCSEE
T ss_pred             CCEEEEEccCCCCCchHHHHHHHH-HHCCCEEEEECCCCCe-E------------------CCeeccCCHHHcCCCCCEE
Confidence            679999999    79999999998 8899998888776422 0                  1122346788888889999


Q ss_pred             EEeC
Q 026023          241 CTLC  244 (244)
Q Consensus       241 vl~~  244 (244)
                      ++.+
T Consensus        82 vi~v   85 (144)
T 2d59_A           82 DLFV   85 (144)
T ss_dssp             EECS
T ss_pred             EEEe
Confidence            9864

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=96.42  E-value=0.006  Score=52.11  Aligned_cols=71  Identities=11%  Similarity=0.159  Sum_probs=46.3

Q ss_pred             CEEEEEc-CChHHHHHHHHHhccCCcEEEEE-cCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       166 ~tvgIvG-~G~IG~~vA~~la~afG~~V~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      .+|+|+| +|++|+.+++.+...=++++.+. ++++.+..-.   ..|.+   .+....++.-.+++++++.++|+|+-
T Consensus        22 irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~---d~gel---~G~~~~gv~v~~dl~~ll~~aDVvID   94 (288)
T 3ijp_A           22 MRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDK---DASIL---IGSDFLGVRITDDPESAFSNTEGILD   94 (288)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTS---BGGGG---TTCSCCSCBCBSCHHHHTTSCSEEEE
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc---chHHh---hccCcCCceeeCCHHHHhcCCCEEEE
Confidence            4899999 99999999998745668886655 6654321000   00111   11223344455799999999999974

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=96.40  E-value=0.0037  Score=54.91  Aligned_cols=71  Identities=24%  Similarity=0.316  Sum_probs=46.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      +..+|+|+|.|.+|+.+|+.|++  ..+|...+++.+.. +. ....      .....+.+...++|.++++++|+|+.+
T Consensus        15 ~~mkilvlGaG~vG~~~~~~L~~--~~~v~~~~~~~~~~-~~-~~~~------~~~~~~d~~d~~~l~~~~~~~DvVi~~   84 (365)
T 3abi_A           15 RHMKVLILGAGNIGRAIAWDLKD--EFDVYIGDVNNENL-EK-VKEF------ATPLKVDASNFDKLVEVMKEFELVIGA   84 (365)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHTT--TSEEEEEESCHHHH-HH-HTTT------SEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred             CccEEEEECCCHHHHHHHHHHhc--CCCeEEEEcCHHHH-HH-Hhcc------CCcEEEecCCHHHHHHHHhCCCEEEEe
Confidence            33479999999999999999843  46788888876541 21 1100      001112233345688999999999876


Q ss_pred             C
Q 026023          244 C  244 (244)
Q Consensus       244 ~  244 (244)
                      +
T Consensus        85 ~   85 (365)
T 3abi_A           85 L   85 (365)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=96.39  E-value=0.0059  Score=55.00  Aligned_cols=71  Identities=14%  Similarity=0.202  Sum_probs=46.5

Q ss_pred             CCEEEEEcCChHHH-HHHHHHhccC-CcEEE-EEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--hCCE
Q 026023          165 GQTVGVIGAGRIGS-AYARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADV  239 (244)
Q Consensus       165 g~tvgIvG~G~IG~-~vA~~la~af-G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sD~  239 (244)
                      -.+|||||+|+||+ ..++.+ +.. ++++. ++|+++.. .+++.+.||       ........+.++++++.  +.|+
T Consensus        83 ~irigiIG~G~~g~~~~~~~l-~~~~~~~lvav~d~~~~~-~~~~a~~~g-------~~~~~~~~~~~~~~ll~~~~vD~  153 (433)
T 1h6d_A           83 RFGYAIVGLGKYALNQILPGF-AGCQHSRIEALVSGNAEK-AKIVAAEYG-------VDPRKIYDYSNFDKIAKDPKIDA  153 (433)
T ss_dssp             CEEEEEECCSHHHHHTHHHHT-TTCSSEEEEEEECSCHHH-HHHHHHHTT-------CCGGGEECSSSGGGGGGCTTCCE
T ss_pred             ceEEEEECCcHHHHHHHHHHH-hhCCCcEEEEEEcCCHHH-HHHHHHHhC-------CCcccccccCCHHHHhcCCCCCE
Confidence            35899999999997 899987 555 67764 67776543 233333321       11100113568999998  7999


Q ss_pred             EEEeC
Q 026023          240 VCTLC  244 (244)
Q Consensus       240 Vvl~~  244 (244)
                      |++++
T Consensus       154 V~iat  158 (433)
T 1h6d_A          154 VYIIL  158 (433)
T ss_dssp             EEECS
T ss_pred             EEEcC
Confidence            99874

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=96.38  E-value=0.0024  Score=52.37  Aligned_cols=36  Identities=14%  Similarity=0.150  Sum_probs=30.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ..+++.|+|+|.+|+.+++.| ...|. |.++++++..
T Consensus         8 ~~~~viI~G~G~~G~~la~~L-~~~g~-v~vid~~~~~   43 (234)
T 2aef_A            8 KSRHVVICGWSESTLECLREL-RGSEV-FVLAEDENVR   43 (234)
T ss_dssp             --CEEEEESCCHHHHHHHHHS-TTSEE-EEEESCGGGH
T ss_pred             CCCEEEEECCChHHHHHHHHH-HhCCe-EEEEECCHHH
Confidence            345799999999999999998 89999 9999998654

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=96.37  E-value=0.0056  Score=52.76  Aligned_cols=76  Identities=16%  Similarity=0.234  Sum_probs=47.3

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      .++|+|+|.|.+|..+|..| ..-|. +|..+|+++........+ ....... ...........++ +.++.||+|+++
T Consensus         4 ~~kI~VIGaG~~G~~ia~~l-a~~g~~~V~l~D~~~~~~~~~~~~-l~~~~~~-~~~~~~i~~t~d~-~a~~~aDiVi~a   79 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIV-GKDNLADVVLFDIAEGIPQGKALD-ITHSMVM-FGSTSKVIGTDDY-ADISGSDVVIIT   79 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHH-HHHTCCEEEEECSSSSHHHHHHHH-HHHHHHH-HTCCCCEEEESCG-GGGTTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHH-HhCCCceEEEEeCCchHHHHHHHH-HHhhhhh-cCCCcEEEECCCH-HHhCCCCEEEEe
Confidence            35899999999999999998 45577 999999986432111111 0000000 0001122223567 788999999986


Q ss_pred             C
Q 026023          244 C  244 (244)
Q Consensus       244 ~  244 (244)
                      +
T Consensus        80 v   80 (317)
T 2ewd_A           80 A   80 (317)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=96.37  E-value=0.0043  Score=52.72  Aligned_cols=37  Identities=22%  Similarity=0.200  Sum_probs=33.8

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      ++.|+++.|+|.|.||+.+|+.| ...| +|..++|+..
T Consensus       125 ~l~~k~vlV~GaGgiG~aia~~L-~~~G-~V~v~~r~~~  161 (287)
T 1nvt_A          125 RVKDKNIVIYGAGGAARAVAFEL-AKDN-NIIIANRTVE  161 (287)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHH-TSSS-EEEEECSSHH
T ss_pred             CcCCCEEEEECchHHHHHHHHHH-HHCC-CEEEEECCHH
Confidence            47889999999999999999998 7899 9999999864

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=96.34  E-value=0.016  Score=52.33  Aligned_cols=36  Identities=22%  Similarity=0.352  Sum_probs=32.0

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCC
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~  198 (244)
                      ++.|++|.|.|+|++|+.+|++| ...|++|++++-+
T Consensus       232 ~l~g~~vaVqGfGnVG~~~a~~L-~e~GakvVavsD~  267 (440)
T 3aog_A          232 QVEGARVAIQGFGNVGNAAARAF-HDHGARVVAVQDH  267 (440)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEECS
T ss_pred             CccCCEEEEeccCHHHHHHHHHH-HHCCCEEEEEEcC
Confidence            58999999999999999999998 8999999954443

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=96.30  E-value=0.0066  Score=54.09  Aligned_cols=66  Identities=27%  Similarity=0.341  Sum_probs=44.3

Q ss_pred             CEEEEEcCChHHHHHHHHHhccC---------CcEEEEE-cCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGF---------KMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR  235 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~af---------G~~V~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~  235 (244)
                      .+|||||+|.||+.-++.+ +..         +++|.++ |+++. ..+++.+.||       .   . ..+.+++++|+
T Consensus        27 lrvgiIG~G~ig~~h~~~~-~~~~~~~~~~~~~~elvav~d~~~~-~a~~~a~~~~-------~---~-~~y~d~~~ll~   93 (412)
T 4gqa_A           27 LNIGLIGSGFMGQAHADAY-RRAAMFYPDLPKRPHLYALADQDQA-MAERHAAKLG-------A---E-KAYGDWRELVN   93 (412)
T ss_dssp             EEEEEECCSHHHHHHHHHH-HHHHHHCTTSSSEEEEEEEECSSHH-HHHHHHHHHT-------C---S-EEESSHHHHHH
T ss_pred             ceEEEEcCcHHHHHHHHHH-HhccccccccCCCeEEEEEEcCCHH-HHHHHHHHcC-------C---C-eEECCHHHHhc
Confidence            4899999999999887776 433         5676654 65543 3444444442       1   1 23479999997


Q ss_pred             --hCCEEEEeC
Q 026023          236 --EADVVCTLC  244 (244)
Q Consensus       236 --~sD~Vvl~~  244 (244)
                        +.|+|++++
T Consensus        94 ~~~vD~V~I~t  104 (412)
T 4gqa_A           94 DPQVDVVDITS  104 (412)
T ss_dssp             CTTCCEEEECS
T ss_pred             CCCCCEEEECC
Confidence              578998864

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=96.29  E-value=0.0057  Score=53.20  Aligned_cols=66  Identities=14%  Similarity=0.134  Sum_probs=44.0

Q ss_pred             CEEEEEcCChHHHH-HHH-HHhccCCcEEE-EEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhh--CCEE
Q 026023          166 QTVGVIGAGRIGSA-YAR-MMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVV  240 (244)
Q Consensus       166 ~tvgIvG~G~IG~~-vA~-~la~afG~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--sD~V  240 (244)
                      .++||||+|.||+. .++ .+.+.=+++|. ++|+++...  +....           ......+.++++++.+  .|+|
T Consensus         3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~--~~~~~-----------~~~~~~~~~~~~ll~~~~~D~V   69 (345)
T 3f4l_A            3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE--EQAPI-----------YSHIHFTSDLDEVLNDPDVKLV   69 (345)
T ss_dssp             EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGG--GGSGG-----------GTTCEEESCTHHHHTCTTEEEE
T ss_pred             eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHH--HHHHh-----------cCCCceECCHHHHhcCCCCCEE
Confidence            37999999999996 566 44344588877 677776432  11111           1122345799999987  8999


Q ss_pred             EEeC
Q 026023          241 CTLC  244 (244)
Q Consensus       241 vl~~  244 (244)
                      ++++
T Consensus        70 ~i~t   73 (345)
T 3f4l_A           70 VVCT   73 (345)
T ss_dssp             EECS
T ss_pred             EEcC
Confidence            8863

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=96.28  E-value=0.0073  Score=54.89  Aligned_cols=45  Identities=16%  Similarity=0.168  Sum_probs=38.9

Q ss_pred             ccccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHH
Q 026023          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK  205 (244)
Q Consensus       160 ~~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~  205 (244)
                      ..++.|++|.|+|.|.+|.+.++.| ...|++|..+++...++..+
T Consensus         7 ~~~l~~~~vlVvGgG~va~~k~~~L-~~~ga~V~vi~~~~~~~~~~   51 (457)
T 1pjq_A            7 FCQLRDRDCLIVGGGDVAERKARLL-LEAGARLTVNALTFIPQFTV   51 (457)
T ss_dssp             EECCBTCEEEEECCSHHHHHHHHHH-HHTTBEEEEEESSCCHHHHH
T ss_pred             EEECCCCEEEEECCCHHHHHHHHHH-HhCcCEEEEEcCCCCHHHHH
Confidence            3468999999999999999999999 89999999999976654333

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=96.25  E-value=0.022  Score=49.78  Aligned_cols=31  Identities=29%  Similarity=0.360  Sum_probs=24.8

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcC
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDL  197 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~  197 (244)
                      +|||+|+|+||+.+++.|..-=++++.+...
T Consensus         3 kVgIiGaG~iG~~~~r~L~~~p~~elvav~d   33 (340)
T 1b7g_O            3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAK   33 (340)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEEC
T ss_pred             EEEEEecCHHHHHHHHHHHcCCCCEEEEEEc
Confidence            7999999999999999984334678766544

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=96.23  E-value=0.011  Score=51.77  Aligned_cols=75  Identities=23%  Similarity=0.334  Sum_probs=48.8

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhccCCc--EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (244)
Q Consensus       163 l~g~tvgIvG~-G~IG~~vA~~la~afG~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~  239 (244)
                      +.+++|+|+|. |.||+.+|-.+ ..+|.  +|..+|...........+ +    ..............++.+.++.||+
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l-~~~g~~~evvLiDi~~~k~~g~a~D-L----~~~~~~~~~i~~t~d~~~al~dADv   79 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTA-AMMRLTPNLCLYDPFAVGLEGVAEE-I----RHCGFEGLNLTFTSDIKEALTDAKY   79 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHH-HHTTCCSCEEEECSCHHHHHHHHHH-H----HHHCCTTCCCEEESCHHHHHTTEEE
T ss_pred             cCCCEEEEECCCChHHHHHHHHH-HhcCCCCEEEEEeCCchhHHHHHHh-h----hhCcCCCCceEEcCCHHHHhCCCCE
Confidence            45679999998 99999999876 56774  899999875421111111 0    0000011122334688899999999


Q ss_pred             EEEe
Q 026023          240 VCTL  243 (244)
Q Consensus       240 Vvl~  243 (244)
                      |+++
T Consensus        80 Vvit   83 (343)
T 3fi9_A           80 IVSS   83 (343)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            9986

>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1

Probab=96.22  E-value=0.021  Score=49.50  Aligned_cols=108  Identities=21%  Similarity=0.226  Sum_probs=67.6

Q ss_pred             hCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCC--hHHHHHHHHH
Q 026023          107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG--RIGSAYARMM  184 (244)
Q Consensus       107 ~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G--~IG~~vA~~l  184 (244)
                      -.+|+|.|..+.+.-|+=-.+=.+.+.  +..         |             .+.|.+|+++|=|  ++..+++..+
T Consensus       133 ~~~vPVINa~~~~~HPtQaLaDl~Ti~--e~~---------g-------------~l~gl~va~vGD~~~rva~Sl~~~~  188 (325)
T 1vlv_A          133 YSGVPVYNGLTDEFHPTQALADLMTIE--ENF---------G-------------RLKGVKVVFMGDTRNNVATSLMIAC  188 (325)
T ss_dssp             HHCSCEEESCCSSCCHHHHHHHHHHHH--HHH---------S-------------CSTTCEEEEESCTTSHHHHHHHHHH
T ss_pred             hCCCCEEeCCCCCCCcHHHHHHHHHHH--HHh---------C-------------CcCCcEEEEECCCCcCcHHHHHHHH
Confidence            347999998776554443333233332  211         1             3789999999986  9999999997


Q ss_pred             hccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          185 VEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       185 a~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                       .-||++|....|..-...++..+......+..+   ..+....+++|.++.+|+|..
T Consensus       189 -~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G---~~v~~~~d~~eav~~aDvvyt  242 (325)
T 1vlv_A          189 -AKMGMNFVACGPEELKPRSDVFKRCQEIVKETD---GSVSFTSNLEEALAGADVVYT  242 (325)
T ss_dssp             -HHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHC---CEEEEESCHHHHHTTCSEEEE
T ss_pred             -HHCCCEEEEECCccccCCHHHHHHHHHHHHHcC---CeEEEEcCHHHHHccCCEEEe
Confidence             789999999999653211222110000001111   123345799999999999975

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=96.22  E-value=0.012  Score=51.20  Aligned_cols=67  Identities=16%  Similarity=0.208  Sum_probs=46.6

Q ss_pred             CCEEEEEcCC-hHHHHHHHHHhccC--CcEEE-EEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--hCC
Q 026023          165 GQTVGVIGAG-RIGSAYARMMVEGF--KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EAD  238 (244)
Q Consensus       165 g~tvgIvG~G-~IG~~vA~~la~af--G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sD  238 (244)
                      -.++||||+| .+|+..++.+ +..  ++++. .+|+++.. .+++.+.||       .    ...+.+++++++  +.|
T Consensus        18 ~irvgiIG~G~~~g~~~~~~l-~~~~~~~~lvav~d~~~~~-~~~~a~~~~-------~----~~~~~~~~~ll~~~~vD   84 (340)
T 1zh8_A           18 KIRLGIVGCGIAARELHLPAL-KNLSHLFEITAVTSRTRSH-AEEFAKMVG-------N----PAVFDSYEELLESGLVD   84 (340)
T ss_dssp             CEEEEEECCSHHHHHTHHHHH-HTTTTTEEEEEEECSSHHH-HHHHHHHHS-------S----CEEESCHHHHHHSSCCS
T ss_pred             ceeEEEEecCHHHHHHHHHHH-HhCCCceEEEEEEcCCHHH-HHHHHHHhC-------C----CcccCCHHHHhcCCCCC
Confidence            3589999999 8999999988 565  67864 56666543 344333332       1    123579999997  589


Q ss_pred             EEEEeC
Q 026023          239 VVCTLC  244 (244)
Q Consensus       239 ~Vvl~~  244 (244)
                      +|+++.
T Consensus        85 ~V~i~t   90 (340)
T 1zh8_A           85 AVDLTL   90 (340)
T ss_dssp             EEEECC
T ss_pred             EEEEeC
Confidence            999864

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=96.21  E-value=0.0093  Score=51.16  Aligned_cols=74  Identities=20%  Similarity=0.285  Sum_probs=45.9

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCC--cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      ++|+|+|.|.+|..+|..| ..-|  .+|..+|++... .+.....++...... ....... ..++ +.++.||+|+++
T Consensus         2 ~kI~VIGaG~~G~~la~~L-~~~g~~~~V~l~d~~~~~-~~~~~~~l~~~~~~~-~~~~~~~-~~d~-~~~~~aDvViia   76 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGL-IAQGVADDYVFIDANEAK-VKADQIDFQDAMANL-EAHGNIV-INDW-AALADADVVIST   76 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHHTCCSEEEEECSSHHH-HHHHHHHHHHHGGGS-SSCCEEE-ESCG-GGGTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHH-HhCCCCCEEEEEcCCHHH-HHHHHHHHHhhhhhc-CCCeEEE-eCCH-HHhCCCCEEEEe
Confidence            4799999999999999998 4557  689999998643 122111111000000 0011121 2466 778999999987


Q ss_pred             C
Q 026023          244 C  244 (244)
Q Consensus       244 ~  244 (244)
                      +
T Consensus        77 v   77 (309)
T 1hyh_A           77 L   77 (309)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A

Probab=96.20  E-value=0.027  Score=49.08  Aligned_cols=111  Identities=18%  Similarity=0.189  Sum_probs=69.8

Q ss_pred             HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCC--hHHHHHHH
Q 026023          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG--RIGSAYAR  182 (244)
Q Consensus       105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G--~IG~~vA~  182 (244)
                      ++-.+|+|.|..+.+..|+=-.+=.+.+.  +.                     .+..+.|.+|+++|=|  +++.+++.
T Consensus       118 A~~s~vPVINa~~~~~HPtQ~LaDl~Ti~--e~---------------------~g~~l~gl~va~vGD~~~~va~Sl~~  174 (335)
T 1dxh_A          118 AKFAGVPVFNGLTDEYHPTQMLADVLTMR--EH---------------------SDKPLHDISYAYLGDARNNMGNSLLL  174 (335)
T ss_dssp             HHHSSSCEEEEECSSCCHHHHHHHHHHHH--HT---------------------CSSCGGGCEEEEESCCSSHHHHHHHH
T ss_pred             HHhCCCCEEcCCCCCCCcHHHHHHHHHHH--HH---------------------cCCCcCCeEEEEecCCccchHHHHHH
Confidence            34457999998776555543333333332  21                     0114889999999996  99999999


Q ss_pred             HHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       183 ~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      .+ .-||++|....|..-...++..+......+..+   ..+....+++|.++.+|+|..
T Consensus       175 ~~-~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G---~~v~~~~d~~eav~~aDvvyt  230 (335)
T 1dxh_A          175 IG-AKLGMDVRIAAPKALWPHDEFVAQCKKFAEESG---AKLTLTEDPKEAVKGVDFVHT  230 (335)
T ss_dssp             HH-HHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHT---CEEEEESCHHHHTTTCSEEEE
T ss_pred             HH-HHcCCEEEEECCcccCCCHHHHHHHHHHHHHcC---CeEEEEeCHHHHhCCCCEEEe
Confidence            97 789999999999653222222110000000111   123345799999999999975

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=96.19  E-value=0.0037  Score=50.99  Aligned_cols=65  Identities=15%  Similarity=0.258  Sum_probs=43.4

Q ss_pred             CEEEEEcCChHHHHHHHHH-hccCCcEEE-EEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh-hCCEEEE
Q 026023          166 QTVGVIGAGRIGSAYARMM-VEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVVCT  242 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~l-a~afG~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~sD~Vvl  242 (244)
                      ++++|+|.|++|+.+++.+ ... |+++. ++|..+...        |     .....+++...++++++++ +.|+|++
T Consensus        81 ~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~--------g-----~~i~gv~V~~~~dl~ell~~~ID~ViI  146 (211)
T 2dt5_A           81 WGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKV--------G-----RPVRGGVIEHVDLLPQRVPGRIEIALL  146 (211)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTT--------T-----CEETTEEEEEGGGHHHHSTTTCCEEEE
T ss_pred             CEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHH--------h-----hhhcCCeeecHHhHHHHHHcCCCEEEE
Confidence            4799999999999999951 145 88855 455554331        0     0111234445678999997 4899988


Q ss_pred             eC
Q 026023          243 LC  244 (244)
Q Consensus       243 ~~  244 (244)
                      ++
T Consensus       147 A~  148 (211)
T 2dt5_A          147 TV  148 (211)
T ss_dssp             CS
T ss_pred             eC
Confidence            64

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=96.16  E-value=0.0067  Score=58.32  Aligned_cols=35  Identities=23%  Similarity=0.337  Sum_probs=31.5

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ++|||||.|.+|..+|..| ..-|.+|+.+|+++..
T Consensus       313 ~kV~VIGaG~MG~~iA~~l-a~aG~~V~l~D~~~~~  347 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATAL-ILSNYPVILKEVNEKF  347 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHH-HTTTCCEEEECSSHHH
T ss_pred             cEEEEEcCCHhhHHHHHHH-HhCCCEEEEEECCHHH
Confidence            5799999999999999998 5679999999998754

>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*

Probab=96.15  E-value=0.035  Score=47.61  Aligned_cols=69  Identities=16%  Similarity=0.208  Sum_probs=50.7

Q ss_pred             cCCCEEEEEcC---ChHHHHHHHHHhccC-CcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCC
Q 026023          163 LKGQTVGVIGA---GRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (244)
Q Consensus       163 l~g~tvgIvG~---G~IG~~vA~~la~af-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (244)
                      +.|.+|+++|=   |++..+++..+ .-| |++|....|..-...++..+       ..   ...+....+++|.++.+|
T Consensus       147 l~gl~va~vGD~~~~rva~Sl~~~~-~~~~g~~v~~~~P~~~~~~~~~~~-------~~---g~~~~~~~d~~eav~~aD  215 (299)
T 1pg5_A          147 IDGLVFALLGDLKYARTVNSLLRIL-TRFRPKLVYLISPQLLRARKEILD-------EL---NYPVKEVENPFEVINEVD  215 (299)
T ss_dssp             STTCEEEEEECCSSCHHHHHHHHHG-GGSCCSEEEEECCGGGCCCHHHHT-------TC---CSCEEEESCGGGTGGGCS
T ss_pred             cCCcEEEEECCCCCCchHHHHHHHH-HhCCCCEEEEECCchhcCCHHHHH-------Hc---CCeEEEeCCHHHHhcCCC
Confidence            78999999998   59999999997 788 99999999965322122111       11   122334478999999999


Q ss_pred             EEEE
Q 026023          239 VVCT  242 (244)
Q Consensus       239 ~Vvl  242 (244)
                      +|..
T Consensus       216 vvyt  219 (299)
T 1pg5_A          216 VLYV  219 (299)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9975

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=96.15  E-value=0.011  Score=52.18  Aligned_cols=66  Identities=18%  Similarity=0.225  Sum_probs=45.6

Q ss_pred             CEEEEEcCC-hHHHHHHHHHhccCCcEEE-EEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhh--CCEEE
Q 026023          166 QTVGVIGAG-RIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVVC  241 (244)
Q Consensus       166 ~tvgIvG~G-~IG~~vA~~la~afG~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--sD~Vv  241 (244)
                      .+|||||+| .+|+..++.+.+.=++++. .+|+++.. .+++.+.|            ++..+.+++|++++  .|+|+
T Consensus         3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~-~~~~a~~~------------g~~~~~~~~ell~~~~vD~V~   69 (387)
T 3moi_A            3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDV-RERFGKEY------------GIPVFATLAEMMQHVQMDAVY   69 (387)
T ss_dssp             EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHH-HHHHHHHH------------TCCEESSHHHHHHHSCCSEEE
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHH-HHHHHHHc------------CCCeECCHHHHHcCCCCCEEE
Confidence            379999999 9999999887333477876 46666543 23333332            12235799999986  89999


Q ss_pred             EeC
Q 026023          242 TLC  244 (244)
Q Consensus       242 l~~  244 (244)
                      +++
T Consensus        70 i~t   72 (387)
T 3moi_A           70 IAS   72 (387)
T ss_dssp             ECS
T ss_pred             EcC
Confidence            864

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.15  E-value=0.0044  Score=51.81  Aligned_cols=54  Identities=19%  Similarity=0.106  Sum_probs=40.1

Q ss_pred             HHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCC
Q 026023          139 VEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY  198 (244)
Q Consensus       139 ~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~  198 (244)
                      .+|.++++-..|..     .....|.+++|.|+|.|.+|..+++.| ...|. ++..+|+.
T Consensus         7 ~ry~Rq~~l~~~g~-----~~q~~l~~~~VlvvG~GglG~~va~~L-a~~Gvg~i~lvD~d   61 (251)
T 1zud_1            7 MRYSRQILLDDIAL-----DGQQKLLDSQVLIIGLGGLGTPAALYL-AGAGVGTLVLADDD   61 (251)
T ss_dssp             HHTHHHHTSTTTHH-----HHHHHHHTCEEEEECCSTTHHHHHHHH-HHTTCSEEEEECCC
T ss_pred             HHhhhhcchhhcCH-----HHHHHHhcCcEEEEccCHHHHHHHHHH-HHcCCCeEEEEeCC
Confidence            34556655544421     122468999999999999999999999 68898 78888664

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=96.12  E-value=0.0056  Score=49.99  Aligned_cols=68  Identities=21%  Similarity=0.288  Sum_probs=46.0

Q ss_pred             CCEEEEEcCChHHHHHHHHH-hccCCcEEE-EEcCCcc-hHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhh--CCE
Q 026023          165 GQTVGVIGAGRIGSAYARMM-VEGFKMNLI-YYDLYQA-TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADV  239 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~l-a~afG~~V~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--sD~  239 (244)
                      .++++|+|.|++|+.+++.+ .+..|+++. ++|..+. ..        |.    .....+++...+++++++++  .|.
T Consensus        84 ~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~ki--------G~----~~i~GvpV~~~~dL~~~v~~~~Id~  151 (212)
T 3keo_A           84 TTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLV--------GK----TTEDGIPVYGISTINDHLIDSDIET  151 (212)
T ss_dssp             CEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTT--------TC----BCTTCCBEEEGGGHHHHC-CCSCCE
T ss_pred             CCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhcc--------Cc----eeECCeEEeCHHHHHHHHHHcCCCE
Confidence            34899999999999999972 145688855 5676655 31        10    01124555667899999985  888


Q ss_pred             EEEeC
Q 026023          240 VCTLC  244 (244)
Q Consensus       240 Vvl~~  244 (244)
                      +++++
T Consensus       152 vIIAv  156 (212)
T 3keo_A          152 AILTV  156 (212)
T ss_dssp             EEECS
T ss_pred             EEEec
Confidence            88864

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=96.07  E-value=0.0097  Score=51.57  Aligned_cols=60  Identities=12%  Similarity=0.148  Sum_probs=43.0

Q ss_pred             CCCEEEEEcCChHHH-HHHHHHhccC-CcEEEE-EcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhh---C
Q 026023          164 KGQTVGVIGAGRIGS-AYARMMVEGF-KMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---A  237 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~-~vA~~la~af-G~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---s  237 (244)
                      .-.++||||+|.||+ ..++.+ +.. +++|.+ +|++...                    .+...+.+++++++.   .
T Consensus        24 ~~~rvgiiG~G~ig~~~~~~~l-~~~~~~~lvav~d~~~~~--------------------~g~~~~~~~~~ll~~~~~v   82 (330)
T 4ew6_A           24 SPINLAIVGVGKIVRDQHLPSI-AKNANFKLVATASRHGTV--------------------EGVNSYTTIEAMLDAEPSI   82 (330)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHH-HHCTTEEEEEEECSSCCC--------------------TTSEEESSHHHHHHHCTTC
T ss_pred             CCceEEEEecCHHHHHHHHHHH-HhCCCeEEEEEEeCChhh--------------------cCCCccCCHHHHHhCCCCC
Confidence            346899999999999 688877 454 788665 5555322                    112245799999987   8


Q ss_pred             CEEEEeC
Q 026023          238 DVVCTLC  244 (244)
Q Consensus       238 D~Vvl~~  244 (244)
                      |+|+++.
T Consensus        83 D~V~i~t   89 (330)
T 4ew6_A           83 DAVSLCM   89 (330)
T ss_dssp             CEEEECS
T ss_pred             CEEEEeC
Confidence            9999863

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.06  E-value=0.014  Score=45.88  Aligned_cols=69  Identities=13%  Similarity=0.101  Sum_probs=46.7

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCC--CccccccCCHHHHhhhCCEEE
Q 026023          165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWKRASSMDEVLREADVVC  241 (244)
Q Consensus       165 g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ell~~sD~Vv  241 (244)
                      ++++.|.|. |.||+.+++.| ..-|.+|.+++|++....+.         ...+..  .......+++.++++.+|+|+
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l-~~~g~~V~~~~r~~~~~~~~---------~~~~~~~~~~D~~~~~~~~~~~~~~d~vi   72 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQA-VQAGYEVTVLVRDSSRLPSE---------GPRPAHVVVGDVLQAADVDKTVAGQDAVI   72 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCGGGSCSS---------SCCCSEEEESCTTSHHHHHHHHTTCSEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHH-HHCCCeEEEEEeChhhcccc---------cCCceEEEEecCCCHHHHHHHHcCCCEEE
Confidence            478999997 99999999998 67899999999986541100         000000  111222345778899999987


Q ss_pred             Ee
Q 026023          242 TL  243 (244)
Q Consensus       242 l~  243 (244)
                      .+
T Consensus        73 ~~   74 (206)
T 1hdo_A           73 VL   74 (206)
T ss_dssp             EC
T ss_pred             EC
Confidence            64

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.05  E-value=0.0062  Score=49.04  Aligned_cols=69  Identities=16%  Similarity=0.046  Sum_probs=47.0

Q ss_pred             CEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       166 ~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      ++|.|.| .|.||+.+++.| ..-|.+|.+.+|++..... .       ..............+++.++++.+|+|+.+
T Consensus         5 ~~ilItGatG~iG~~l~~~L-~~~g~~V~~~~r~~~~~~~-~-------~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   74 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEA-LNRGFEVTAVVRHPEKIKI-E-------NEHLKVKKADVSSLDEVCEVCKGADAVISA   74 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHH-HTTTCEEEEECSCGGGCCC-C-------CTTEEEECCCTTCHHHHHHHHTTCSEEEEC
T ss_pred             CEEEEEcCCchHHHHHHHHH-HHCCCEEEEEEcCcccchh-c-------cCceEEEEecCCCHHHHHHHhcCCCEEEEe
Confidence            6899999 699999999998 7889999999998654110 0       000000011222334578899999998754

>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*

Probab=96.04  E-value=0.0056  Score=53.51  Aligned_cols=34  Identities=29%  Similarity=0.380  Sum_probs=28.9

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEE-EcCCcc
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQA  200 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~-~~~~~~  200 (244)
                      .+|||.|||+||+.++|.+ ..+|++|.+ .|+...
T Consensus         8 ~kvgInGFGRIGrlv~R~~-~~~~veivainDp~~d   42 (346)
T 3h9e_O            8 LTVGINGFGRIGRLVLRAC-MEKGVKVVAVNDPFID   42 (346)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEEECTTCC
T ss_pred             eEEEEECCChHHHHHHHHH-HhCCCEEEEEeCCCCC
Confidence            4899999999999999995 889999988 565543

>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}

Probab=96.03  E-value=0.03  Score=49.13  Aligned_cols=111  Identities=21%  Similarity=0.203  Sum_probs=69.6

Q ss_pred             HHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCC--hHHHHHH
Q 026023          104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG--RIGSAYA  181 (244)
Q Consensus       104 ~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G--~IG~~vA  181 (244)
                      .++-.+|+|.|..+.+.-|+=-.+=.+.+.  +.+         |             .+.|.+|+++|=|  +++.+++
T Consensus       139 lA~~s~vPVINa~~~~~HPtQaLaDl~Ti~--E~~---------g-------------~l~gl~va~vGD~~~rva~Sl~  194 (359)
T 2w37_A          139 LARDSGVPVWNGLTDEWHPTQMLADFMTVK--ENF---------G-------------KLQGLTLTFMGDGRNNVANSLL  194 (359)
T ss_dssp             HHHHSSSCEEEEECSSCCHHHHHHHHHHHH--HHH---------S-------------CCTTCEEEEESCTTSHHHHHHH
T ss_pred             HHHhCCCCEEcCCCCCCCccHHHHHHHHHH--HHh---------C-------------CcCCeEEEEECCCccchHHHHH
Confidence            344558999998775555543333333332  211         1             3789999999986  9999999


Q ss_pred             HHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       182 ~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      ..+ .-||++|....|..-...++..+.........+   ..+....+++|.++.+|+|..
T Consensus       195 ~~~-~~lG~~v~~~~P~~l~p~~~~~~~~~~~a~~~G---~~v~~~~d~~eav~~aDvvyt  251 (359)
T 2w37_A          195 VTG-AILGVNIHIVAPKALFPTEETQNIAKGFAEKSG---AKLVITDDLDEGLKGSNVVYT  251 (359)
T ss_dssp             HHH-HHHTCEEEEECCGGGSCCHHHHHHHHHHHHHHT---CCEEEESCHHHHHTTCSEEEE
T ss_pred             HHH-HHcCCEEEEECCccccCCHHHHHHHHHHHHHcC---CeEEEEeCHHHHhcCCCEEEE
Confidence            997 789999999999653221222110000000111   123345799999999999975

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=96.02  E-value=0.0038  Score=53.59  Aligned_cols=33  Identities=21%  Similarity=0.371  Sum_probs=29.9

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      .+|+|+|.|.+|..+|..| . -|.+|..++|+..
T Consensus         3 mkI~IiGaGa~G~~~a~~L-~-~g~~V~~~~r~~~   35 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYL-S-LYHDVTVVTRRQE   35 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHH-H-TTSEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHH-h-cCCceEEEECCHH
Confidence            4799999999999999999 6 7899999999863

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=96.01  E-value=0.0094  Score=53.26  Aligned_cols=76  Identities=14%  Similarity=0.121  Sum_probs=48.2

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCC---cEEEEEcCCcchHHHHHHhhhhhhhh-cCCCCCccccccCCHHHHhhh--CCE
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFK---MNLIYYDLYQATRLEKFVTAYGQFLK-ANGEQPVTWKRASSMDEVLRE--ADV  239 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG---~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~ell~~--sD~  239 (244)
                      ++|+|+|.|.||+.+++.| ...|   .+|..++|+... .++..+.++.... ............+++++++++  +|+
T Consensus         2 ~kVlIiGaGgiG~~ia~~L-~~~g~~~~~V~v~~r~~~~-~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~Dv   79 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKM-AMNREVFSHITLASRTLSK-CQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQI   79 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HTCTTTCCEEEEEESCHHH-HHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             CEEEEECCCHHHHHHHHHH-HhCCCCceEEEEEECCHHH-HHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCE
Confidence            4799999999999999998 5666   499999998754 2333332211000 000001122223468899998  899


Q ss_pred             EEEe
Q 026023          240 VCTL  243 (244)
Q Consensus       240 Vvl~  243 (244)
                      |+.+
T Consensus        80 Vin~   83 (405)
T 4ina_A           80 VLNI   83 (405)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9875

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=96.01  E-value=0.0061  Score=46.32  Aligned_cols=63  Identities=13%  Similarity=0.150  Sum_probs=45.8

Q ss_pred             CCCEEEEEcC----ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023          164 KGQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (244)
Q Consensus       164 ~g~tvgIvG~----G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~  239 (244)
                      .-++|.|+|.    |+.|..+++.| +..|.+|..+++....+  +               -.+..-+.++.|+-...|+
T Consensus        12 ~p~~vaVvGas~~~g~~G~~~~~~l-~~~G~~v~~vnp~~~~~--~---------------i~G~~~~~sl~el~~~vDl   73 (140)
T 1iuk_A           12 QAKTIAVLGAHKDPSRPAHYVPRYL-REQGYRVLPVNPRFQGE--E---------------LFGEEAVASLLDLKEPVDI   73 (140)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHH-HHTTCEEEEECGGGTTS--E---------------ETTEECBSSGGGCCSCCSE
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHH-HHCCCEEEEeCCCcccC--c---------------CCCEEecCCHHHCCCCCCE
Confidence            3568999999    89999999998 89999977777652110  0               0112234578888888999


Q ss_pred             EEEeC
Q 026023          240 VCTLC  244 (244)
Q Consensus       240 Vvl~~  244 (244)
                      +++.+
T Consensus        74 avi~v   78 (140)
T 1iuk_A           74 LDVFR   78 (140)
T ss_dssp             EEECS
T ss_pred             EEEEe
Confidence            98864

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=96.01  E-value=0.0079  Score=50.38  Aligned_cols=41  Identities=22%  Similarity=0.085  Sum_probs=34.2

Q ss_pred             ccccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          160 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       160 ~~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ..++.||++.|.|. |.||+++|+.| ..-|++|+..+++..+
T Consensus        23 ~~~l~~k~vlVTGas~gIG~aia~~l-a~~G~~V~~~~~~~~~   64 (269)
T 4dmm_A           23 ALPLTDRIALVTGASRGIGRAIALEL-AAAGAKVAVNYASSAG   64 (269)
T ss_dssp             -CTTTTCEEEETTCSSHHHHHHHHHH-HHTTCEEEEEESSCHH
T ss_pred             ccCCCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeCCChH
Confidence            35689999999986 67999999999 6889999998885444

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=96.00  E-value=0.013  Score=50.69  Aligned_cols=36  Identities=14%  Similarity=0.077  Sum_probs=32.1

Q ss_pred             CCEEEEEcCChHHHH-HHHHHhccCCcEEEEEcCCcch
Q 026023          165 GQTVGVIGAGRIGSA-YARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       165 g~tvgIvG~G~IG~~-vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .+++.|+|.|.+|.. +|+.| +..|++|.++|.+..+
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L-~~~G~~V~~~D~~~~~   40 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIA-KEAGFEVSGCDAKMYP   40 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHH-HHTTCEEEEEESSCCT
T ss_pred             CcEEEEEEECHHHHHHHHHHH-HhCCCEEEEEcCCCCc
Confidence            478999999999996 99998 8999999999997643

>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A

Probab=95.99  E-value=0.035  Score=48.03  Aligned_cols=110  Identities=24%  Similarity=0.170  Sum_probs=67.7

Q ss_pred             HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCC-hHHHHHHHH
Q 026023          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYARM  183 (244)
Q Consensus       105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G-~IG~~vA~~  183 (244)
                      ++-.+|+|.|..+.+..|+=-.+=.+.+.  +..         |             .+.|.+|+++|=| ++..+++..
T Consensus       119 A~~~~vPVINa~~~~~HPtQaLaDl~Ti~--e~~---------g-------------~l~gl~va~vGD~~~va~Sl~~~  174 (321)
T 1oth_A          119 AKEASIPIINGLSDLYHPIQILADYLTLQ--EHY---------S-------------SLKGLTLSWIGDGNNILHSIMMS  174 (321)
T ss_dssp             HHHCSSCEEESCCSSCCHHHHHHHHHHHH--HHH---------S-------------CCTTCEEEEESCSSHHHHHHHTT
T ss_pred             HHhCCCCEEcCCCCCCCcHHHHHHHHHHH--HHh---------C-------------CcCCcEEEEECCchhhHHHHHHH
Confidence            34457999998876655553333333332  211         1             3789999999985 588888888


Q ss_pred             HhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       184 la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      + .-||++|....|..-...++..+.........+   ..+....+++|.++.+|+|..
T Consensus       175 ~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G---~~~~~~~d~~eav~~aDvvy~  229 (321)
T 1oth_A          175 A-AKFGMHLQAATPKGYEPDASVTKLAEQYAKENG---TKLLLTNDPLEAAHGGNVLIT  229 (321)
T ss_dssp             T-GGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHT---CCEEEESCHHHHHTTCSEEEE
T ss_pred             H-HHcCCeEEEECCccccCCHHHHHHHHHHHHHcC---CeEEEEECHHHHhccCCEEEE
Confidence            6 789999999999653211222110000000111   123345799999999999975

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=95.98  E-value=0.012  Score=53.01  Aligned_cols=68  Identities=24%  Similarity=0.367  Sum_probs=50.3

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc-----hHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA-----TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR  235 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~  235 (244)
                      .-|+||||+|||||+-|.+=|.-| +=-|.+|++--|...     ++++...           ...+   ...+..|..+
T Consensus        33 ~~lkgK~IaVIGyGsQG~AqAlNL-RDSGv~V~Vglr~~s~~e~~~S~~~A~-----------~~Gf---~v~~~~eA~~   97 (491)
T 3ulk_A           33 SYLQGKKVVIVGCGAQGLNQGLNM-RDSGLDISYALRKEAIAEKRASWRKAT-----------ENGF---KVGTYEELIP   97 (491)
T ss_dssp             GGGTTSEEEEESCSHHHHHHHHHH-HHTTCEEEEEECHHHHHTTCHHHHHHH-----------HTTC---EEEEHHHHGG
T ss_pred             HHHcCCEEEEeCCChHhHHHHhHH-HhcCCcEEEEeCCCCcccccchHHHHH-----------HCCC---EecCHHHHHH
Confidence            358999999999999999999999 999999888766321     2222211           1112   2347999999


Q ss_pred             hCCEEEEe
Q 026023          236 EADVVCTL  243 (244)
Q Consensus       236 ~sD~Vvl~  243 (244)
                      .||+|.+-
T Consensus        98 ~ADvV~~L  105 (491)
T 3ulk_A           98 QADLVINL  105 (491)
T ss_dssp             GCSEEEEC
T ss_pred             hCCEEEEe
Confidence            99999874

>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}

Probab=95.98  E-value=0.1  Score=44.54  Aligned_cols=65  Identities=18%  Similarity=0.113  Sum_probs=50.1

Q ss_pred             cCCCEEEEEcC---ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023          163 LKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (244)
Q Consensus       163 l~g~tvgIvG~---G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~  239 (244)
                      +.|.+|+++|=   +++..+++..+ .-||++|....|..-.. .+ .+.            .++....+++|.++.+|+
T Consensus       144 l~gl~va~vGDl~~~rva~Sl~~~~-~~~g~~v~~~~P~~~~p-~~-~~~------------~g~~~~~d~~eav~~aDv  208 (291)
T 3d6n_B          144 VKDLRVLYVGDIKHSRVFRSGAPLL-NMFGAKIGVCGPKTLIP-RD-VEV------------FKVDVFDDVDKGIDWADV  208 (291)
T ss_dssp             CTTCEEEEESCCTTCHHHHHHHHHH-HHTTCEEEEESCGGGSC-TT-GGG------------GCEEEESSHHHHHHHCSE
T ss_pred             cCCcEEEEECCCCCCchHHHHHHHH-HHCCCEEEEECCchhCC-ch-HHH------------CCCEEEcCHHHHhCCCCE
Confidence            78999999996   89999999997 78999999999864321 11 110            113345799999999999


Q ss_pred             EEE
Q 026023          240 VCT  242 (244)
Q Consensus       240 Vvl  242 (244)
                      |..
T Consensus       209 vy~  211 (291)
T 3d6n_B          209 VIW  211 (291)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            975

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=95.98  E-value=0.0069  Score=53.07  Aligned_cols=63  Identities=14%  Similarity=0.188  Sum_probs=43.8

Q ss_pred             CEEEEEcCChHHHH-HHHHHhccC-CcEEE-EEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhh--CCEE
Q 026023          166 QTVGVIGAGRIGSA-YARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVV  240 (244)
Q Consensus       166 ~tvgIvG~G~IG~~-vA~~la~af-G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--sD~V  240 (244)
                      .++||||+|.||+. .++.+ +.. +++|. .+|+++... ++   .|           -....+.++++++++  .|+|
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l-~~~~~~~l~av~d~~~~~~-~~---~~-----------~~~~~~~~~~~ll~~~~vD~V   69 (362)
T 3fhl_A            6 IKTGLAAFGMSGQVFHAPFI-STNPHFELYKIVERSKELS-KE---RY-----------PQASIVRSFKELTEDPEIDLI   69 (362)
T ss_dssp             EEEEESCCSHHHHHTTHHHH-HHCTTEEEEEEECSSCCGG-GT---TC-----------TTSEEESCSHHHHTCTTCCEE
T ss_pred             eEEEEECCCHHHHHHHHHHH-hhCCCeEEEEEEcCCHHHH-HH---hC-----------CCCceECCHHHHhcCCCCCEE
Confidence            48999999999997 67776 455 78876 556665431 11   11           022345799999987  8999


Q ss_pred             EEeC
Q 026023          241 CTLC  244 (244)
Q Consensus       241 vl~~  244 (244)
                      +++.
T Consensus        70 ~i~t   73 (362)
T 3fhl_A           70 VVNT   73 (362)
T ss_dssp             EECS
T ss_pred             EEeC
Confidence            9874

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=95.95  E-value=0.013  Score=50.96  Aligned_cols=33  Identities=24%  Similarity=0.373  Sum_probs=26.2

Q ss_pred             CEEEEEcCChHHHHHHHHHhcc--CCcEEEEEcCC
Q 026023          166 QTVGVIGAGRIGSAYARMMVEG--FKMNLIYYDLY  198 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~a--fG~~V~~~~~~  198 (244)
                      .+|||+|+|+||+++.|.|..-  =+++|.+.+..
T Consensus         1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivain~~   35 (332)
T 1hdg_O            1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAINDL   35 (332)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEEEcC
Confidence            3799999999999999997333  35888877654

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=95.95  E-value=0.0067  Score=58.23  Aligned_cols=35  Identities=20%  Similarity=0.313  Sum_probs=31.3

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ++|||||.|.+|..+|..+ ..-|.+|+.+|+++..
T Consensus       315 ~kV~VIGaG~MG~~iA~~l-a~aG~~V~l~D~~~~~  349 (715)
T 1wdk_A          315 KQAAVLGAGIMGGGIAYQS-ASKGTPILMKDINEHG  349 (715)
T ss_dssp             SSEEEECCHHHHHHHHHHH-HHTTCCEEEECSSHHH
T ss_pred             CEEEEECCChhhHHHHHHH-HhCCCEEEEEECCHHH
Confidence            5799999999999999998 5679999999998754

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=95.94  E-value=0.012  Score=51.34  Aligned_cols=65  Identities=17%  Similarity=0.278  Sum_probs=43.4

Q ss_pred             EEEEEcCChHHH-HHHHHHhccC-CcEEE-EEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhh--CCEEE
Q 026023          167 TVGVIGAGRIGS-AYARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVVC  241 (244)
Q Consensus       167 tvgIvG~G~IG~-~vA~~la~af-G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--sD~Vv  241 (244)
                      ++||||+|.||+ ..++.+ +.. +++|. .+|++ +.  +++.+.++       .  .+...+.++++++.+  .|+|+
T Consensus         4 rvgiiG~G~~g~~~~~~~l-~~~~~~~l~av~d~~-~~--~~~a~~~~-------~--~~~~~~~~~~~ll~~~~~D~V~   70 (349)
T 3i23_A            4 KMGFIGFGKSANRYHLPYV-MIRETLEVKTIFDLH-VN--EKAAAPFK-------E--KGVNFTADLNELLTDPEIELIT   70 (349)
T ss_dssp             EEEEECCSHHHHHTTHHHH-TTCTTEEEEEEECTT-CC--HHHHHHHH-------T--TTCEEESCTHHHHSCTTCCEEE
T ss_pred             EEEEEccCHHHHHHHHHHH-hhCCCeEEEEEECCC-HH--HHHHHhhC-------C--CCCeEECCHHHHhcCCCCCEEE
Confidence            799999999999 577776 555 78876 56666 22  22222221       0  112345799999986  89999


Q ss_pred             EeC
Q 026023          242 TLC  244 (244)
Q Consensus       242 l~~  244 (244)
                      ++.
T Consensus        71 i~t   73 (349)
T 3i23_A           71 ICT   73 (349)
T ss_dssp             ECS
T ss_pred             EeC
Confidence            863

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=95.94  E-value=0.011  Score=48.07  Aligned_cols=72  Identities=21%  Similarity=0.147  Sum_probs=47.9

Q ss_pred             cCCCEEEEEc-CChHHHHHHHHHhccC--CcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023          163 LKGQTVGVIG-AGRIGSAYARMMVEGF--KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (244)
Q Consensus       163 l~g~tvgIvG-~G~IG~~vA~~la~af--G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~  239 (244)
                      ..++++.|.| .|.||+.+++.| ..-  |.+|.+.+|++... ++.    +   .............+++.++++..|+
T Consensus         2 ~~~~~ilVtGasG~iG~~l~~~l-~~~~~g~~V~~~~r~~~~~-~~~----~---~~~~~~~~D~~d~~~~~~~~~~~d~   72 (253)
T 1xq6_A            2 ANLPTVLVTGASGRTGQIVYKKL-KEGSDKFVAKGLVRSAQGK-EKI----G---GEADVFIGDITDADSINPAFQGIDA   72 (253)
T ss_dssp             CSCCEEEEESTTSHHHHHHHHHH-HHTTTTCEEEEEESCHHHH-HHT----T---CCTTEEECCTTSHHHHHHHHTTCSE
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHH-HhcCCCcEEEEEEcCCCch-hhc----C---CCeeEEEecCCCHHHHHHHHcCCCE
Confidence            3578999998 699999999998 566  89999999986431 110    0   0000001122233467788999999


Q ss_pred             EEEe
Q 026023          240 VCTL  243 (244)
Q Consensus       240 Vvl~  243 (244)
                      |+.+
T Consensus        73 vi~~   76 (253)
T 1xq6_A           73 LVIL   76 (253)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            8764

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=95.93  E-value=0.01  Score=53.76  Aligned_cols=77  Identities=18%  Similarity=0.216  Sum_probs=49.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhh---------hhhhhhcCCCCCccccccCCHHHHh
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA---------YGQFLKANGEQPVTWKRASSMDEVL  234 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~ell  234 (244)
                      +-.+|+|+|+|-+|..+|-.| ...|.+|+++|..++. .+. .+.         ...++++. ...-......+.++.+
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~-A~~G~~V~g~Did~~k-V~~-ln~G~~pi~Epgl~ell~~~-~~~g~l~~tt~~~~ai   95 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGF-ALLGHRVVGYDVNPSI-VER-LRAGRPHIYEPGLEEALGRA-LSSGRLSFAESAEEAV   95 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHH-HHHTCEEEEECSCHHH-HHH-HHTTCCSSCCTTHHHHHHHH-HHTTCEEECSSHHHHH
T ss_pred             CCCEEEEEccCHHHHHHHHHH-HhCCCcEEEEECCHHH-HHH-HHCCCCCCCCCCHHHHHHHH-HHcCCeeEEcCHHHHH
Confidence            446999999999999999998 4679999999988643 111 000         00000000 0000112345788999


Q ss_pred             hhCCEEEEeC
Q 026023          235 READVVCTLC  244 (244)
Q Consensus       235 ~~sD~Vvl~~  244 (244)
                      +.||++++++
T Consensus        96 ~~ad~~~I~V  105 (444)
T 3vtf_A           96 AATDATFIAV  105 (444)
T ss_dssp             HTSSEEEECC
T ss_pred             hcCCceEEEe
Confidence            9999999875

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=95.91  E-value=0.014  Score=50.86  Aligned_cols=32  Identities=31%  Similarity=0.430  Sum_probs=26.5

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcC
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDL  197 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~  197 (244)
                      .+|||+|+|+||+.++|.|..-=+++|.+.+.
T Consensus         4 ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d   35 (335)
T 1u8f_O            4 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAIND   35 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSEEEEEEC
T ss_pred             eEEEEEccCHHHHHHHHHHHcCCCcEEEEecC
Confidence            38999999999999999974445788887765

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=95.91  E-value=0.017  Score=50.42  Aligned_cols=30  Identities=23%  Similarity=0.342  Sum_probs=25.1

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEc
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYD  196 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~  196 (244)
                      +|||+|+|+||+++++.|...-++++.+..
T Consensus         3 kVgIiGaG~iG~~l~r~L~~~~~~elvav~   32 (337)
T 1cf2_P            3 AVAINGYGTVGKRVADAIAQQDDMKVIGVS   32 (337)
T ss_dssp             EEEEECCSTTHHHHHHHHHTSSSEEEEEEE
T ss_pred             EEEEEeECHHHHHHHHHHHcCCCcEEEEEE
Confidence            799999999999999998444678886664

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=95.91  E-value=0.014  Score=47.61  Aligned_cols=71  Identities=10%  Similarity=0.109  Sum_probs=48.3

Q ss_pred             cCCCEEEEEc-CChHHHHHHHHHhccCC-cEEEEEcCCcchHHHHHHhhhhhhhhcCCC--CCccccccCCHHHHhhhCC
Q 026023          163 LKGQTVGVIG-AGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGE--QPVTWKRASSMDEVLREAD  238 (244)
Q Consensus       163 l~g~tvgIvG-~G~IG~~vA~~la~afG-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~ell~~sD  238 (244)
                      ...++|.|.| .|.||+.+++.| ..-| .+|.+++|++....+.         .....  ....+...++++++++.+|
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L-~~~G~~~V~~~~R~~~~~~~~---------~~~~~~~~~~Dl~d~~~~~~~~~~~D   90 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQL-ADKQTIKQTLFARQPAKIHKP---------YPTNSQIIMGDVLNHAALKQAMQGQD   90 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHH-TTCTTEEEEEEESSGGGSCSS---------CCTTEEEEECCTTCHHHHHHHHTTCS
T ss_pred             CcccEEEEEeCCcHHHHHHHHHH-HhCCCceEEEEEcChhhhccc---------ccCCcEEEEecCCCHHHHHHHhcCCC
Confidence            3457999999 799999999998 7889 8999999986541100         00000  0112223346778899999


Q ss_pred             EEEEe
Q 026023          239 VVCTL  243 (244)
Q Consensus       239 ~Vvl~  243 (244)
                      +|+.+
T Consensus        91 ~vv~~   95 (236)
T 3qvo_A           91 IVYAN   95 (236)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            99864

>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A

Probab=95.90  E-value=0.044  Score=48.23  Aligned_cols=110  Identities=17%  Similarity=0.154  Sum_probs=67.8

Q ss_pred             HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCC--hHHHHHHH
Q 026023          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG--RIGSAYAR  182 (244)
Q Consensus       105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G--~IG~~vA~  182 (244)
                      ++-.+|+|.|..+...-|+=-.+=.+.+.  ..+         |             .+.|++|+++|=|  +++.+++.
T Consensus       144 A~~s~vPVINa~~~~~HPtQaLaDl~Ti~--E~~---------G-------------~l~glkva~vGD~~nnva~Sl~~  199 (365)
T 4amu_A          144 VKYSGVPVWNGLTDDEHPTQIIADFMTMK--EKF---------G-------------NLKNKKIVFIGDYKNNVGVSTMI  199 (365)
T ss_dssp             HHHHCSCEEEEECSSCCHHHHHHHHHHHH--HHH---------S-------------SCTTCEEEEESSTTSHHHHHHHH
T ss_pred             HHhCCCCEEeCCCCCCCcHHHHHHHHHHH--HHh---------C-------------CCCCCEEEEECCCCcchHHHHHH
Confidence            44458999998765544443222222222  110         1             2789999999988  78999999


Q ss_pred             HHhccCCcEEEEEcCCcchH--HHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          183 MMVEGFKMNLIYYDLYQATR--LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       183 ~la~afG~~V~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      .+ .-|||+|....|..-..  .++..+...+.....+   ..+.-..+++|.++.+|+|..
T Consensus       200 ~~-~~lG~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~g---~~i~~~~d~~eav~~aDVVyt  257 (365)
T 4amu_A          200 GA-AFNGMHVVMCGPDNYKNEIDKNVLAKCIELFKRNG---GSLRFSTDKILAAQDADVIYT  257 (365)
T ss_dssp             HH-HHTTCEEEEESCGGGGGGSCHHHHHHHHHHHHHHS---CEEEEESCHHHHTTTCSEEEE
T ss_pred             HH-HHcCCEEEEECCccccCCCcHHHHHHHHHHHHHcC---CEEEEECCHHHHhcCCCEEEe
Confidence            97 78999999999964322  1222211000011111   123345799999999999975

>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A

Probab=95.88  E-value=0.14  Score=43.97  Aligned_cols=62  Identities=24%  Similarity=0.345  Sum_probs=47.1

Q ss_pred             cCCCEEEEEcCC---hHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023          163 LKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (244)
Q Consensus       163 l~g~tvgIvG~G---~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~  239 (244)
                      +.|.+|+++|=|   ++..+++..+ .-||++|....|..-.. +.              ...+  ...+++|.++.+|+
T Consensus       145 l~glkva~vGD~~~~rva~Sl~~~~-~~~G~~v~~~~P~~~~~-~~--------------~~~g--~~~d~~eav~~aDv  206 (304)
T 3r7f_A          145 FKGLTVSIHGDIKHSRVARSNAEVL-TRLGARVLFSGPSEWQD-EE--------------NTFG--TYVSMDEAVESSDV  206 (304)
T ss_dssp             CTTCEEEEESCCTTCHHHHHHHHHH-HHTTCEEEEESCGGGSC-TT--------------CSSC--EECCHHHHHHHCSE
T ss_pred             CCCCEEEEEcCCCCcchHHHHHHHH-HHcCCEEEEECCCccCc-ch--------------hhcC--ccCCHHHHhCCCCE
Confidence            789999999975   6999999997 78999999999853221 00              0111  23589999999999


Q ss_pred             EEE
Q 026023          240 VCT  242 (244)
Q Consensus       240 Vvl  242 (244)
                      |..
T Consensus       207 vyt  209 (304)
T 3r7f_A          207 VML  209 (304)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            875

>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1

Probab=95.87  E-value=0.034  Score=47.90  Aligned_cols=73  Identities=18%  Similarity=0.355  Sum_probs=51.9

Q ss_pred             ccCCCEEEEEcC---ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCC
Q 026023          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (244)
Q Consensus       162 ~l~g~tvgIvG~---G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (244)
                      .+.|.+|+++|=   |++..+++..+ .-||++|....|..-...++..+.    ++..+   ..+....+++|.++.+|
T Consensus       152 ~l~gl~va~vGD~~~~rva~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~----~~~~g---~~~~~~~d~~eav~~aD  223 (308)
T 1ml4_A          152 RIDGLKIGLLGDLKYGRTVHSLAEAL-TFYDVELYLISPELLRMPRHIVEE----LREKG---MKVVETTTLEDVIGKLD  223 (308)
T ss_dssp             CSSSEEEEEESCTTTCHHHHHHHHHG-GGSCEEEEEECCGGGCCCHHHHHH----HHHTT---CCEEEESCTHHHHTTCS
T ss_pred             CCCCeEEEEeCCCCcCchHHHHHHHH-HHCCCEEEEECCccccCCHHHHHH----HHHcC---CeEEEEcCHHHHhcCCC
Confidence            378999999998   48999999997 799999999999653222222111    11112   12334478999999999


Q ss_pred             EEEE
Q 026023          239 VVCT  242 (244)
Q Consensus       239 ~Vvl  242 (244)
                      +|..
T Consensus       224 vvyt  227 (308)
T 1ml4_A          224 VLYV  227 (308)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9975

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=95.86  E-value=0.0085  Score=53.02  Aligned_cols=65  Identities=20%  Similarity=0.319  Sum_probs=46.0

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccC--CcEEEEE-cCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGF--KMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC  241 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~af--G~~V~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv  241 (244)
                      ..+|||+|+| .|+.-++.+ +..  ++++.++ |++. +..+++.+.||            +..+.++++++.+.|+|+
T Consensus         7 ~~rv~VvG~G-~g~~h~~a~-~~~~~~~elvav~~~~~-~~a~~~a~~~g------------v~~~~~~~~l~~~~D~v~   71 (372)
T 4gmf_A            7 KQRVLIVGAK-FGEMYLNAF-MQPPEGLELVGLLAQGS-ARSRELAHAFG------------IPLYTSPEQITGMPDIAC   71 (372)
T ss_dssp             CEEEEEECST-TTHHHHHTT-SSCCTTEEEEEEECCSS-HHHHHHHHHTT------------CCEESSGGGCCSCCSEEE
T ss_pred             CCEEEEEehH-HHHHHHHHH-HhCCCCeEEEEEECCCH-HHHHHHHHHhC------------CCEECCHHHHhcCCCEEE
Confidence            4589999999 799888876 555  6887754 6554 33444444442            224578999999999998


Q ss_pred             EeC
Q 026023          242 TLC  244 (244)
Q Consensus       242 l~~  244 (244)
                      +++
T Consensus        72 i~~   74 (372)
T 4gmf_A           72 IVV   74 (372)
T ss_dssp             ECC
T ss_pred             EEC
Confidence            863

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=95.86  E-value=0.011  Score=51.29  Aligned_cols=74  Identities=22%  Similarity=0.252  Sum_probs=46.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCc--EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC  241 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv  241 (244)
                      .+++|+|+|.|.||..+|..| ..-|.  ++..+|...........+ +.... ... .....  ..+..+.++.||+|+
T Consensus         8 ~~~kV~ViGaG~vG~~~a~~l-~~~~~~~el~l~D~~~~k~~g~a~D-L~~~~-~~~-~~~~i--~~~~~~a~~~aDiVv   81 (326)
T 3vku_A            8 DHQKVILVGDGAVGSSYAYAM-VLQGIAQEIGIVDIFKDKTKGDAID-LEDAL-PFT-SPKKI--YSAEYSDAKDADLVV   81 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHH-HHHTCCSEEEEECSCHHHHHHHHHH-HHTTG-GGS-CCCEE--EECCGGGGTTCSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HhCCCCCeEEEEeCChHHHHHHHhh-Hhhhh-hhc-CCcEE--EECcHHHhcCCCEEE
Confidence            567999999999999999997 56666  899999975431111111 10000 000 11111  134467799999999


Q ss_pred             Ee
Q 026023          242 TL  243 (244)
Q Consensus       242 l~  243 (244)
                      ++
T Consensus        82 i~   83 (326)
T 3vku_A           82 IT   83 (326)
T ss_dssp             EC
T ss_pred             EC
Confidence            86

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=95.85  E-value=0.0045  Score=51.89  Aligned_cols=67  Identities=10%  Similarity=0.112  Sum_probs=45.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhh-CCEEEE
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE-ADVVCT  242 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~-sD~Vvl  242 (244)
                      .+++|.|.|.|.||+.+++.| ..-|.+|.+++|+.... ...+.          ..........++.++++. +|+|+.
T Consensus         2 ~~~~ilVtGaG~iG~~l~~~L-~~~g~~V~~~~r~~~~~-~~~~~----------~~~~Dl~d~~~~~~~~~~~~d~vih   69 (286)
T 3gpi_A            2 SLSKILIAGCGDLGLELARRL-TAQGHEVTGLRRSAQPM-PAGVQ----------TLIADVTRPDTLASIVHLRPEILVY   69 (286)
T ss_dssp             CCCCEEEECCSHHHHHHHHHH-HHTTCCEEEEECTTSCC-CTTCC----------EEECCTTCGGGCTTGGGGCCSEEEE
T ss_pred             CCCcEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCcccc-ccCCc----------eEEccCCChHHHHHhhcCCCCEEEE
Confidence            357899999999999999998 68899999999986431 10000          001112223456667777 998874

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=95.83  E-value=0.028  Score=50.87  Aligned_cols=69  Identities=19%  Similarity=0.224  Sum_probs=52.4

Q ss_pred             ccCCCEEEEEcCC----------hHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHH
Q 026023          162 LLKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD  231 (244)
Q Consensus       162 ~l~g~tvgIvG~G----------~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  231 (244)
                      .+.|++|+|+|+.          .=...+++.| +..|++|.+|||...+.....   ++          .......+++
T Consensus       330 ~l~g~~V~vlGlafK~~tdD~ReSpa~~ii~~L-~~~Ga~V~~~DP~~~~~~~~~---~~----------~~~~~~~~~~  395 (444)
T 3vtf_A          330 GLRGRHVGVLGLAFKPNTDDVRESRGVEVARLL-LERGARVYVHDPMAMEKARAV---LG----------DSVTYVEDPQ  395 (444)
T ss_dssp             CCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHH-HHTTCEEEEECSSTHHHHHHH---HG----------GGSEECSCHH
T ss_pred             ccCCCEEEEEeeecCCCCCccccCcHHHHHHHH-HHCCCEEEEECCCCChHHHHh---cC----------CCceecCCHH
Confidence            5799999999986          2377899999 899999999999864432221   11          1234567899


Q ss_pred             HHhhhCCEEEEeC
Q 026023          232 EVLREADVVCTLC  244 (244)
Q Consensus       232 ell~~sD~Vvl~~  244 (244)
                      +.++.+|.|+++.
T Consensus       396 ~a~~~aDavvi~t  408 (444)
T 3vtf_A          396 ALLDQVEGVIIAT  408 (444)
T ss_dssp             HHHHHCSEEEECS
T ss_pred             HHHhCCCEEEEcc
Confidence            9999999999863

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=95.82  E-value=0.019  Score=49.49  Aligned_cols=66  Identities=12%  Similarity=0.158  Sum_probs=44.9

Q ss_pred             CEEEEEcCChHHH-HHHHHHhccCCcEE-EEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--hCCEEE
Q 026023          166 QTVGVIGAGRIGS-AYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVVC  241 (244)
Q Consensus       166 ~tvgIvG~G~IG~-~vA~~la~afG~~V-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sD~Vv  241 (244)
                      .+|||||+|++|. ..++.+ +.-|++| -.+|+++.. .+++.+.|+           ....+.+++++++  +.|+|+
T Consensus         5 ~rvgiiG~G~~~~~~~~~~l-~~~~~~lvav~d~~~~~-~~~~a~~~~-----------~~~~~~~~~~ll~~~~~D~V~   71 (336)
T 2p2s_A            5 IRFAAIGLAHNHIYDMCQQL-IDAGAELAGVFESDSDN-RAKFTSLFP-----------SVPFAASAEQLITDASIDLIA   71 (336)
T ss_dssp             CEEEEECCSSTHHHHHHHHH-HHTTCEEEEEECSCTTS-CHHHHHHST-----------TCCBCSCHHHHHTCTTCCEEE
T ss_pred             cEEEEECCChHHHHHhhhhh-cCCCcEEEEEeCCCHHH-HHHHHHhcC-----------CCcccCCHHHHhhCCCCCEEE
Confidence            4899999999996 677776 4568986 567777643 223222221           1223579999997  689999


Q ss_pred             EeC
Q 026023          242 TLC  244 (244)
Q Consensus       242 l~~  244 (244)
                      +++
T Consensus        72 i~t   74 (336)
T 2p2s_A           72 CAV   74 (336)
T ss_dssp             ECS
T ss_pred             EeC
Confidence            874

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=95.81  E-value=0.025  Score=49.10  Aligned_cols=75  Identities=21%  Similarity=0.385  Sum_probs=47.6

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      ++|+|+|.|.+|..+|..| ..-|. .|..+|+..... +.............. .........++ +.++.||+|++++
T Consensus        15 ~kI~ViGaG~vG~~iA~~l-a~~g~~~V~L~Di~~~~l-~~~~~~l~~~~~~~~-~~~~i~~t~d~-~al~~aD~VI~av   90 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLL-GQKDLGDVYMFDIIEGVP-QGKALDLNHCMALIG-SPAKIFGENNY-EYLQNSDVVIITA   90 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCCEEEEECSSTTHH-HHHHHHHHHHHHHHT-CCCCEEEESCG-GGGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHH-HhCCCCeEEEEECCHHHH-HHHHHHHHhHhhccC-CCCEEEECCCH-HHHCCCCEEEEcC
Confidence            5899999999999999998 46677 899999986432 211100100010000 11223333567 7899999999863

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*

Probab=95.81  E-value=0.016  Score=50.57  Aligned_cols=32  Identities=25%  Similarity=0.410  Sum_probs=26.2

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCC
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~  198 (244)
                      +|||+|+|+||+++.|.|..--+++|.+.+..
T Consensus         3 kVgI~G~G~iGr~l~R~l~~~~~veivain~~   34 (334)
T 3cmc_O            3 KVGINGFGRIGRNVFRAALKNPDIEVVAVNDL   34 (334)
T ss_dssp             EEEEESCSHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred             EEEEECCCHHHHHHHHHHhCCCCeEEEEEeCC
Confidence            79999999999999999733337888877664

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=95.80  E-value=0.034  Score=49.81  Aligned_cols=37  Identities=22%  Similarity=0.169  Sum_probs=32.1

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhcc-CCcEEEEEcCC
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEG-FKMNLIYYDLY  198 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~a-fG~~V~~~~~~  198 (244)
                      .++.|++|.|.|+|++|+.+|++| .. .|++|++++-+
T Consensus       205 ~~l~g~~vaVqG~GnVG~~~a~~L-~e~~GakvVavsD~  242 (415)
T 2tmg_A          205 IDPKKATVAVQGFGNVGQFAALLI-SQELGSKVVAVSDS  242 (415)
T ss_dssp             CCTTTCEEEEECCSHHHHHHHHHH-HHTTCCEEEEEECS
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHH-HHhcCCEEEEEEeC
Confidence            368999999999999999999998 77 99999955443

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=95.80  E-value=0.0079  Score=48.40  Aligned_cols=74  Identities=15%  Similarity=0.251  Sum_probs=47.1

Q ss_pred             CEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       166 ~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      |++.|.| .|.||+.+++.|++.-|.+|.+++|++.+..++.... +   .............+++.++++.+|+|+.+
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~-~---~~~~~~~~D~~d~~~~~~~~~~~d~vv~~   80 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIID-H---ERVTVIEGSFQNPGXLEQAVTNAEVVFVG   80 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHT-S---TTEEEEECCTTCHHHHHHHHTTCSEEEES
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccC-C---CceEEEECCCCCHHHHHHHHcCCCEEEEc
Confidence            6799999 6999999999983278999999999865111111000 0   00000011222334678899999999865

>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=95.77  E-value=0.042  Score=47.12  Aligned_cols=100  Identities=14%  Similarity=0.027  Sum_probs=67.3

Q ss_pred             hhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcC-ChHHHHHHHHH
Q 026023          106 NKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYARMM  184 (244)
Q Consensus       106 ~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~-G~IG~~vA~~l  184 (244)
                      +-.+|+|.|..+.+..|+=-.+=.+.+.  +..         |             .+.|.+|+++|= +++..+++..+
T Consensus       119 ~~~~vPVINa~~~~~HPtQaLaDl~Ti~--e~~---------g-------------~l~gl~ia~vGD~~rva~Sl~~~~  174 (301)
T 2ef0_A          119 RHAKVPVVNALSDRAHPLQALADLLTLK--EVF---------G-------------GLAGLEVAWVGDGNNVLNSLLEVA  174 (301)
T ss_dssp             HHCSSCEEEEECSSCCHHHHHHHHHHHH--HHH---------S-------------CCTTCEEEEESCCCHHHHHHHHHH
T ss_pred             HHCCCCEEeCCCCccCchHHHHHHHHHH--HHh---------C-------------CcCCcEEEEECCCchhHHHHHHHH
Confidence            3447999998776555543333333332  211         1             378999999997 89999999997


Q ss_pred             hccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          185 VEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       185 a~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                       .-||++|....|..-...++..+..            .+....+++|.++.+|+|..
T Consensus       175 -~~~g~~v~~~~P~~~~~~~~~~~~~------------~~~~~~d~~eav~~aDvvy~  219 (301)
T 2ef0_A          175 -PLAGLKVRVATPKGYEPDPGLLKRA------------NAFFTHDPKEAALGAHALYT  219 (301)
T ss_dssp             -HHHTCEEEEECCTTCCCCHHHHHHH------------TCEEESCHHHHHTTCSEEEE
T ss_pred             -HHcCCEEEEECCchhcCCHHHHhhc------------eeEEECCHHHHhcCCCEEEe
Confidence             7899999999997533222221110            12335799999999999975

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=95.76  E-value=0.024  Score=50.29  Aligned_cols=69  Identities=13%  Similarity=0.112  Sum_probs=47.2

Q ss_pred             CCEEEEEcCCh---HHHHHHHHHhccCC-cEEEE--EcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhh--
Q 026023          165 GQTVGVIGAGR---IGSAYARMMVEGFK-MNLIY--YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--  236 (244)
Q Consensus       165 g~tvgIvG~G~---IG~~vA~~la~afG-~~V~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--  236 (244)
                      -.+|||||+|.   ||+.-+..+ +..+ +++.+  +|+++.. .+++.+.||       ...  ...+.+++++++.  
T Consensus        12 ~~rvgiiG~G~~~~ig~~h~~~~-~~~~~~~lva~v~d~~~~~-a~~~a~~~g-------~~~--~~~~~~~~~ll~~~~   80 (398)
T 3dty_A           12 PIRWAMVGGGSQSQIGYIHRCAA-LRDNTFVLVAGAFDIDPIR-GSAFGEQLG-------VDS--ERCYADYLSMFEQEA   80 (398)
T ss_dssp             CEEEEEEECCTTCSSHHHHHHHH-HGGGSEEEEEEECCSSHHH-HHHHHHHTT-------CCG--GGBCSSHHHHHHHHT
T ss_pred             cceEEEEcCCccchhHHHHHHHH-hhCCCeEEEEEEeCCCHHH-HHHHHHHhC-------CCc--ceeeCCHHHHHhccc
Confidence            45899999999   999998876 4554 78774  6887643 233333331       110  1245799999986  


Q ss_pred             -----CCEEEEeC
Q 026023          237 -----ADVVCTLC  244 (244)
Q Consensus       237 -----sD~Vvl~~  244 (244)
                           .|+|+++.
T Consensus        81 ~~~~~vD~V~i~t   93 (398)
T 3dty_A           81 RRADGIQAVSIAT   93 (398)
T ss_dssp             TCTTCCSEEEEES
T ss_pred             ccCCCCCEEEECC
Confidence                 89999874

>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A

Probab=95.75  E-value=0.06  Score=46.47  Aligned_cols=109  Identities=16%  Similarity=0.148  Sum_probs=67.8

Q ss_pred             hhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcC-ChHHHHHHHHH
Q 026023          106 NKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYARMM  184 (244)
Q Consensus       106 ~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~-G~IG~~vA~~l  184 (244)
                      +-.+|+|.|..+.+..|+=-.+=.+.+.  +..         |             .+.|.+|+++|= +++..+++..+
T Consensus       120 ~~~~vPVINa~~~~~HPtQaLaDl~Ti~--e~~---------g-------------~l~gl~va~vGD~~rva~Sl~~~~  175 (315)
T 1pvv_A          120 KYATVPVINGLSDFSHPCQALADYMTIW--EKK---------G-------------TIKGVKVVYVGDGNNVAHSLMIAG  175 (315)
T ss_dssp             HHCSSCEEEEECSSCCHHHHHHHHHHHH--HHH---------S-------------CCTTCEEEEESCCCHHHHHHHHHH
T ss_pred             HhCCCCEEcCCCCCCCcHHHHHHHHHHH--HHh---------C-------------CcCCcEEEEECCCcchHHHHHHHH
Confidence            3447999998776554443333333332  211         1             378999999997 89999999997


Q ss_pred             hccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          185 VEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       185 a~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                       .-||++|....|..-...++..+......+..+   ..+....+++|.++.+|+|..
T Consensus       176 -~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g---~~~~~~~d~~eav~~aDvvy~  229 (315)
T 1pvv_A          176 -TKLGADVVVATPEGYEPDEKVIKWAEQNAAESG---GSFELLHDPVKAVKDADVIYT  229 (315)
T ss_dssp             -HHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHT---CEEEEESCHHHHTTTCSEEEE
T ss_pred             -HHCCCEEEEECCccccCCHHHHHHHHHHHHHcC---CeEEEEeCHHHHhCCCCEEEE
Confidence             789999999999653211222110000000111   123345799999999999975

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=95.71  E-value=0.011  Score=51.56  Aligned_cols=66  Identities=14%  Similarity=0.155  Sum_probs=42.5

Q ss_pred             CEEEEEcCChHHHHHHHHHhccC--------CcEEEE-EcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhh
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGF--------KMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~af--------G~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  236 (244)
                      .+|||||+|.||+.-++.+ +..        +++|.+ +|+++. ..+.+.+.||          ++ ..+.+++++|++
T Consensus         7 lrvgiIG~G~ig~~h~~~~-~~~~~~~~~~~~~~l~av~d~~~~-~a~~~a~~~g----------~~-~~~~d~~~ll~~   73 (390)
T 4h3v_A            7 LGIGLIGYAFMGAAHSQAW-RSAPRFFDLPLHPDLNVLCGRDAE-AVRAAAGKLG----------WS-TTETDWRTLLER   73 (390)
T ss_dssp             EEEEEECHHHHHHHHHHHH-HHHHHHSCCSSEEEEEEEECSSHH-HHHHHHHHHT----------CS-EEESCHHHHTTC
T ss_pred             CcEEEEcCCHHHHHHHHHH-HhCccccccccCceEEEEEcCCHH-HHHHHHHHcC----------CC-cccCCHHHHhcC
Confidence            4899999999999876654 332        446554 566653 3344444442          11 234789999965


Q ss_pred             --CCEEEEeC
Q 026023          237 --ADVVCTLC  244 (244)
Q Consensus       237 --sD~Vvl~~  244 (244)
                        .|+|++++
T Consensus        74 ~~iDaV~I~t   83 (390)
T 4h3v_A           74 DDVQLVDVCT   83 (390)
T ss_dssp             TTCSEEEECS
T ss_pred             CCCCEEEEeC
Confidence              78898863

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=95.71  E-value=0.015  Score=50.15  Aligned_cols=74  Identities=22%  Similarity=0.249  Sum_probs=44.9

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCCc--EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      .++|+|+|.|.+|..+|..| ..-|.  +|..+|+.... .+.....+..... .......+.  .+..+.++.||+|++
T Consensus         6 ~~kI~IIGaG~vG~sla~~l-~~~~~~~ev~l~Di~~~~-~~~~~~dl~~~~~-~~~~~~~i~--~~~~~al~~aDvVii   80 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFAL-MNQGIADEIVLIDANESK-AIGDAMDFNHGKV-FAPKPVDIW--HGDYDDCRDADLVVI   80 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHH-HHHTCCSEEEEECSSHHH-HHHHHHHHHHHTT-SSSSCCEEE--ECCGGGTTTCSEEEE
T ss_pred             CCEEEEECcCHHHHHHHHHH-HhCCCCCEEEEEeCCcch-HHHHHhhHHHHhh-hcCCCeEEE--cCcHHHhCCCCEEEE
Confidence            35899999999999999987 55454  89999998642 2211111111000 000011111  134567999999998


Q ss_pred             e
Q 026023          243 L  243 (244)
Q Consensus       243 ~  243 (244)
                      +
T Consensus        81 a   81 (316)
T 1ldn_A           81 C   81 (316)
T ss_dssp             C
T ss_pred             c
Confidence            6

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=95.71  E-value=0.022  Score=49.16  Aligned_cols=73  Identities=18%  Similarity=0.162  Sum_probs=44.8

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCc--EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      .+|+|+|.|.+|..+|..| ..-|.  +|..+|+++.. .+.....+..... .. ....... .+ .+.++.||+|+++
T Consensus         1 mkI~VIGaG~~G~~la~~l-~~~g~~~~V~l~D~~~~~-~~~~~~~l~~~~~-~~-~~~~i~~-~d-~~~~~~aDvViia   74 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFAL-LMKGFAREMVLIDVDKKR-AEGDALDLIHGTP-FT-RRANIYA-GD-YADLKGSDVVIVA   74 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHHTCCSEEEEECSSHHH-HHHHHHHHHHHGG-GS-CCCEEEE-CC-GGGGTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHH-HhCCCCCeEEEEeCChHH-HHHHHHHHHhhhh-hc-CCcEEEe-CC-HHHhCCCCEEEEc
Confidence            3799999999999999998 56677  99999998643 1211111100000 00 0111212 34 3567999999987


Q ss_pred             C
Q 026023          244 C  244 (244)
Q Consensus       244 ~  244 (244)
                      +
T Consensus        75 v   75 (319)
T 1a5z_A           75 A   75 (319)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=95.69  E-value=0.02  Score=49.60  Aligned_cols=75  Identities=15%  Similarity=0.217  Sum_probs=47.2

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      .+|+|+|.|.+|..+|..| ..-|. .|..+|...... +.....+....... ..........++ +.++.||+|+++.
T Consensus         5 ~kI~VIGaG~vG~~ia~~l-a~~g~~~v~L~Di~~~~l-~~~~~~l~~~~~~~-~~~~~i~~t~d~-~al~~aD~Vi~a~   80 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLI-VQKNLGDVVLFDIVKNMP-HGKALDTSHTNVMA-YSNCKVSGSNTY-DDLAGADVVIVTA   80 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCCEEEEECSSSSHH-HHHHHHHHTHHHHH-TCCCCEEEECCG-GGGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHH-HhCCCCeEEEEeCCHHHH-HHHHHHHHhhhhhc-CCCcEEEECCCH-HHhCCCCEEEEeC
Confidence            5899999999999999998 45677 899999886431 11111110000000 012223333577 7799999999863

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=95.69  E-value=0.021  Score=49.98  Aligned_cols=67  Identities=12%  Similarity=0.226  Sum_probs=45.3

Q ss_pred             CCEEEEEcCChHHH-HHHHHHhccCCcEEE-EEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhh--CCEE
Q 026023          165 GQTVGVIGAGRIGS-AYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVV  240 (244)
Q Consensus       165 g~tvgIvG~G~IG~-~vA~~la~afG~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--sD~V  240 (244)
                      -.+|||||+|.+|. ..+..+ +.-|+++. .+|+++.. .+++.+.||       .    ...+.++++++++  .|+|
T Consensus        26 ~irvgiiG~G~~~~~~~~~~~-~~~~~~lvav~d~~~~~-a~~~a~~~~-------~----~~~~~~~~~ll~~~~vD~V   92 (361)
T 3u3x_A           26 ELRFAAVGLNHNHIYGQVNCL-LRAGARLAGFHEKDDAL-AAEFSAVYA-------D----ARRIATAEEILEDENIGLI   92 (361)
T ss_dssp             CCEEEEECCCSTTHHHHHHHH-HHTTCEEEEEECSCHHH-HHHHHHHSS-------S----CCEESCHHHHHTCTTCCEE
T ss_pred             CcEEEEECcCHHHHHHHHHHh-hcCCcEEEEEEcCCHHH-HHHHHHHcC-------C----CcccCCHHHHhcCCCCCEE
Confidence            35899999999995 567776 56789865 55666533 344333331       0    2235799999986  8999


Q ss_pred             EEeC
Q 026023          241 CTLC  244 (244)
Q Consensus       241 vl~~  244 (244)
                      +++.
T Consensus        93 ~I~t   96 (361)
T 3u3x_A           93 VSAA   96 (361)
T ss_dssp             EECC
T ss_pred             EEeC
Confidence            9863

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=95.66  E-value=0.022  Score=49.21  Aligned_cols=35  Identities=31%  Similarity=0.485  Sum_probs=31.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCc
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ  199 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~  199 (244)
                      ..++|+|+|.|.+|..+|..| ...|. +|..+|+.+
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l-~~~g~~~v~l~D~~~   42 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLL-AQKELADVVLVDIPQ   42 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHH-HHTTCCEEEEECCGG
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HhCCCCeEEEEeccc
Confidence            467999999999999999998 57788 999999984

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=95.65  E-value=0.012  Score=49.37  Aligned_cols=39  Identities=21%  Similarity=0.239  Sum_probs=33.9

Q ss_pred             ccccCCCEEEEEcC-Ch--HHHHHHHHHhccCCcEEEEEcCCc
Q 026023          160 GNLLKGQTVGVIGA-GR--IGSAYARMMVEGFKMNLIYYDLYQ  199 (244)
Q Consensus       160 ~~~l~g~tvgIvG~-G~--IG~~vA~~la~afG~~V~~~~~~~  199 (244)
                      ...+.||++.|.|. |.  ||+++|+.| ..-|++|+..+|+.
T Consensus        21 M~~l~~k~vlVTGasg~~GIG~~ia~~l-~~~G~~V~~~~r~~   62 (280)
T 3nrc_A           21 MGFLAGKKILITGLLSNKSIAYGIAKAM-HREGAELAFTYVGQ   62 (280)
T ss_dssp             -CTTTTCEEEECCCCSTTCHHHHHHHHH-HHTTCEEEEEECTT
T ss_pred             ccccCCCEEEEECCCCCCCHHHHHHHHH-HHcCCEEEEeeCch
Confidence            45689999999996 45  999999999 68899999999986

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=95.64  E-value=0.0025  Score=54.28  Aligned_cols=34  Identities=18%  Similarity=0.231  Sum_probs=29.8

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      .+|+|+|.|.+|..+|..| ..-|.+|..++|+..
T Consensus         3 mkI~iiGaGa~G~~~a~~L-~~~g~~V~~~~r~~~   36 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYEL-QQSLPHTTLIGRHAK   36 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHH-HHHCTTCEEEESSCE
T ss_pred             cEEEEECCCHHHHHHHHHH-HHCCCeEEEEEeccC
Confidence            4799999999999999998 566889999999853

>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*

Probab=95.64  E-value=0.054  Score=47.09  Aligned_cols=109  Identities=17%  Similarity=0.130  Sum_probs=67.9

Q ss_pred             CCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCC--hHHHHHHHHHh
Q 026023          108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG--RIGSAYARMMV  185 (244)
Q Consensus       108 ~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G--~IG~~vA~~la  185 (244)
                      .+|+|.|..+.+..|+=-.+=.+.+.  +.+                    .+..+.|.+|+++|=|  +++.+++..+ 
T Consensus       120 ~~vPVINa~~~~~HPtQ~LaDl~Ti~--e~~--------------------~g~~l~gl~ia~vGD~~~~va~Sl~~~~-  176 (333)
T 1duv_G          120 ASVPVWNGLTNEFHPTQLLADLLTMQ--EHL--------------------PGKAFNEMTLVYAGDARNNMGNSMLEAA-  176 (333)
T ss_dssp             HSSCEEESCCSSCCHHHHHHHHHHHH--HHS--------------------TTCCGGGCEEEEESCTTSHHHHHHHHHH-
T ss_pred             CCCCeEcCCCCCCCchHHHHHHHHHH--HHh--------------------cCCCCCCcEEEEECCCccchHHHHHHHH-
Confidence            47999998775555543333333332  210                    0114789999999986  9999999997 


Q ss_pred             ccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          186 EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       186 ~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      .-||++|....|..-...++..+.........+   ..+....+++|.++.+|+|..
T Consensus       177 ~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G---~~v~~~~d~~eav~~aDvvyt  230 (333)
T 1duv_G          177 ALTGLDLRLVAPQACWPEAALVTECRALAQQNG---GNITLTEDVAKGVEGADFIYT  230 (333)
T ss_dssp             HHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTT---CEEEEESCHHHHHTTCSEEEE
T ss_pred             HHcCCEEEEECCcccCCCHHHHHHHHHHHHHcC---CeEEEEECHHHHhCCCCEEEe
Confidence            789999999999653221222110000011111   123345799999999999975

>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*

Probab=95.63  E-value=0.056  Score=47.53  Aligned_cols=114  Identities=17%  Similarity=0.107  Sum_probs=68.3

Q ss_pred             HHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcC--ChHHHHH
Q 026023          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA--GRIGSAY  180 (244)
Q Consensus       103 ~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~--G~IG~~v  180 (244)
                      ..+.-.+|+|.|.-+.+.-|+=-.+=.+.+.  +.                    +.+..+.|.+|+++|=  +++....
T Consensus       141 ~la~~s~vPVING~g~~~HPtQaL~Dl~Ti~--e~--------------------~~~~~l~gl~ia~vGD~~~~va~S~  198 (358)
T 4h31_A          141 ELGAFAGVPVWNGLTDEFHPTQILADFLTML--EH--------------------SQGKALADIQFAYLGDARNNVGNSL  198 (358)
T ss_dssp             HHHHHSSSCEEESCCSSCCHHHHHHHHHHHH--HT--------------------TTTCCGGGCEEEEESCTTSHHHHHH
T ss_pred             HhhhhccCceECCCCcCCCchHHHHHHHHHH--HH--------------------hcCCCcCceEEEecCCCCcccchHH
Confidence            3344568999996665544433222222221  11                    1123588999999995  4899999


Q ss_pred             HHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       181 A~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      +..+ .-||++|..+.|..-...++..+..-......   ...+....+++|.++.+|+|..
T Consensus       199 ~~~~-~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~---g~~v~~~~d~~eav~~aDvvyt  256 (358)
T 4h31_A          199 MVGA-AKMGMDIRLVGPQAYWPDEELVAACQAIAKQT---GGKITLTENVAEGVQGCDFLYT  256 (358)
T ss_dssp             HHHH-HHHTCEEEEESCGGGSCCHHHHHHHHHHHHHH---TCEEEEESCHHHHHTTCSEEEE
T ss_pred             HHHH-HhcCceEEEeCCcccCCCHHHHHHHHHHHHHc---CCcceeccCHHHHhccCcEEEE
Confidence            9997 89999999999854221122111000000011   1223345799999999999864

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=95.63  E-value=0.038  Score=49.37  Aligned_cols=69  Identities=17%  Similarity=0.192  Sum_probs=45.9

Q ss_pred             CCEEEEEcCCh---HHHHHHHHHhccCC-cEEE--EEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhh--
Q 026023          165 GQTVGVIGAGR---IGSAYARMMVEGFK-MNLI--YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--  236 (244)
Q Consensus       165 g~tvgIvG~G~---IG~~vA~~la~afG-~~V~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--  236 (244)
                      -.+|||||+|.   ||+..+..+ +..+ +++.  .+|+++.. .+++.+.||       ...  ...+.+++++++.  
T Consensus        37 ~~rvgiiG~G~~~~ig~~h~~~~-~~~~~~~lva~v~d~~~~~-a~~~a~~~g-------~~~--~~~~~~~~~ll~~~~  105 (417)
T 3v5n_A           37 RIRLGMVGGGSGAFIGAVHRIAA-RLDDHYELVAGALSSTPEK-AEASGRELG-------LDP--SRVYSDFKEMAIREA  105 (417)
T ss_dssp             CEEEEEESCC--CHHHHHHHHHH-HHTSCEEEEEEECCSSHHH-HHHHHHHHT-------CCG--GGBCSCHHHHHHHHH
T ss_pred             cceEEEEcCCCchHHHHHHHHHH-hhCCCcEEEEEEeCCCHHH-HHHHHHHcC-------CCc--ccccCCHHHHHhccc
Confidence            35899999999   999988876 5554 7876  46877643 333333332       110  1235799999987  


Q ss_pred             -----CCEEEEeC
Q 026023          237 -----ADVVCTLC  244 (244)
Q Consensus       237 -----sD~Vvl~~  244 (244)
                           .|+|+++.
T Consensus       106 ~~~~~vD~V~I~t  118 (417)
T 3v5n_A          106 KLKNGIEAVAIVT  118 (417)
T ss_dssp             HCTTCCSEEEECS
T ss_pred             ccCCCCcEEEECC
Confidence                 89999863

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=95.62  E-value=0.0062  Score=49.58  Aligned_cols=73  Identities=14%  Similarity=0.191  Sum_probs=48.9

Q ss_pred             cCCCEEEEEc-CChHHHHHHHHHhccCCc--EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023          163 LKGQTVGVIG-AGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (244)
Q Consensus       163 l~g~tvgIvG-~G~IG~~vA~~la~afG~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~  239 (244)
                      +.++++.|.| .|.||+.+++.| ..-|.  +|.+++|++....+...       .........+...++++++++..|+
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L-~~~G~~~~V~~~~r~~~~~~~~~~-------~~~~~~~~D~~d~~~~~~~~~~~d~   87 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEI-LEQGLFSKVTLIGRRKLTFDEEAY-------KNVNQEVVDFEKLDDYASAFQGHDV   87 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHH-HHHTCCSEEEEEESSCCCCCSGGG-------GGCEEEECCGGGGGGGGGGGSSCSE
T ss_pred             hcCCeEEEECCCcHHHHHHHHHH-HcCCCCCEEEEEEcCCCCcccccc-------CCceEEecCcCCHHHHHHHhcCCCE
Confidence            5678999999 699999999998 68899  99999998643110000       0000001222333567788889999


Q ss_pred             EEEe
Q 026023          240 VCTL  243 (244)
Q Consensus       240 Vvl~  243 (244)
                      |+.+
T Consensus        88 vi~~   91 (242)
T 2bka_A           88 GFCC   91 (242)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            8865

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=95.60  E-value=0.0094  Score=51.22  Aligned_cols=70  Identities=16%  Similarity=0.156  Sum_probs=45.2

Q ss_pred             ccccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCC
Q 026023          160 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (244)
Q Consensus       160 ~~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (244)
                      .....+++|.|.|. |.||+.+++.| ..-|.+|++++|+.......             ..........++.++++.+|
T Consensus        14 ~~~~~~~~vlVtGatG~iG~~l~~~L-~~~G~~V~~~~r~~~~~~~~-------------~~~~Dl~d~~~~~~~~~~~d   79 (347)
T 4id9_A           14 LVPRGSHMILVTGSAGRVGRAVVAAL-RTQGRTVRGFDLRPSGTGGE-------------EVVGSLEDGQALSDAIMGVS   79 (347)
T ss_dssp             -------CEEEETTTSHHHHHHHHHH-HHTTCCEEEEESSCCSSCCS-------------EEESCTTCHHHHHHHHTTCS
T ss_pred             ccccCCCEEEEECCCChHHHHHHHHH-HhCCCEEEEEeCCCCCCCcc-------------EEecCcCCHHHHHHHHhCCC
Confidence            45789999999997 99999999998 78899999999986430000             00111222345778899999


Q ss_pred             EEEEe
Q 026023          239 VVCTL  243 (244)
Q Consensus       239 ~Vvl~  243 (244)
                      +|+-+
T Consensus        80 ~vih~   84 (347)
T 4id9_A           80 AVLHL   84 (347)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            98743

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=95.59  E-value=0.031  Score=47.74  Aligned_cols=35  Identities=26%  Similarity=0.397  Sum_probs=30.6

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCCc--EEEEEcCCcc
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQA  200 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG~--~V~~~~~~~~  200 (244)
                      ..+|+|+|.|.+|..+|..| ..-|.  +|..+|++..
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l-~~~g~~~~V~l~d~~~~   43 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAA-AQRGIAREIVLEDIAKE   43 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHH-HHTTCCSEEEEECSSHH
T ss_pred             CCEEEEECCCHHHHHHHHHH-HhCCCCCEEEEEeCChh
Confidence            35899999999999999998 56687  9999999863

>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A

Probab=95.58  E-value=0.06  Score=46.29  Aligned_cols=72  Identities=17%  Similarity=0.349  Sum_probs=50.4

Q ss_pred             cCCCEEEEEcC---ChHHHHHHHHHhccC-CcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCC
Q 026023          163 LKGQTVGVIGA---GRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (244)
Q Consensus       163 l~g~tvgIvG~---G~IG~~vA~~la~af-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (244)
                      +.|.+|+++|=   |++..+++..+ .-| |++|....|..-...++..+.    ++..   ...+....+++|.++.+|
T Consensus       149 l~glkva~vGD~~~~rva~Sl~~~~-~~~~G~~v~~~~P~~~~~~~~~~~~----~~~~---g~~~~~~~d~~eav~~aD  220 (306)
T 4ekn_B          149 IDGIKIAFVGDLKYGRTVHSLVYAL-SLFENVEMYFVSPKELRLPKDIIED----LKAK---NIKFYEKESLDDLDDDID  220 (306)
T ss_dssp             STTCEEEEESCTTTCHHHHHHHHHH-HTSSSCEEEEECCGGGCCCHHHHHH----HHHT---TCCEEEESCGGGCCTTCS
T ss_pred             cCCCEEEEEcCCCCCcHHHHHHHHH-HhcCCCEEEEECCcccccCHHHHHH----HHHc---CCEEEEEcCHHHHhcCCC
Confidence            78999999997   58999999997 799 999999998643211222111    1111   122334578999999999


Q ss_pred             EEEE
Q 026023          239 VVCT  242 (244)
Q Consensus       239 ~Vvl  242 (244)
                      +|..
T Consensus       221 vvy~  224 (306)
T 4ekn_B          221 VLYV  224 (306)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9874

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=95.58  E-value=0.011  Score=50.60  Aligned_cols=41  Identities=12%  Similarity=0.102  Sum_probs=35.8

Q ss_pred             cccccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          159 VGNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       159 ~~~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      ....+.|++|.|.|. |.||+.+++.| ..-|.+|++++|+..
T Consensus        14 ~~~~~~~~~vlVTGasG~iG~~l~~~L-~~~g~~V~~~~r~~~   55 (330)
T 2pzm_A           14 LVPRGSHMRILITGGAGCLGSNLIEHW-LPQGHEILVIDNFAT   55 (330)
T ss_dssp             CCSTTTCCEEEEETTTSHHHHHHHHHH-GGGTCEEEEEECCSS
T ss_pred             CcccCCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEECCCc
Confidence            346789999999987 99999999998 678999999999653

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=95.58  E-value=0.014  Score=47.84  Aligned_cols=36  Identities=28%  Similarity=0.237  Sum_probs=32.2

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCC
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  198 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~  198 (244)
                      ++.|+++.|.|. |.||+.+++.| ..-|++|+..+|+
T Consensus         4 ~l~~k~vlVTGasggiG~~~a~~l-~~~G~~V~~~~r~   40 (258)
T 3afn_B            4 DLKGKRVLITGSSQGIGLATARLF-ARAGAKVGLHGRK   40 (258)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHH-HHTTCEEEEEESS
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHH-HHCCCEEEEECCC
Confidence            478899999975 89999999999 6789999999998

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=95.57  E-value=0.02  Score=48.52  Aligned_cols=39  Identities=15%  Similarity=0.190  Sum_probs=35.0

Q ss_pred             cccCCCEEEEEcCC---hHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          161 NLLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       161 ~~l~g~tvgIvG~G---~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      ..+.||++.|.|.+   .||+.+|+.| ..-|++|+..+|+..
T Consensus        26 ~~l~~k~vlVTGasg~~GIG~~ia~~l-a~~G~~V~~~~r~~~   67 (296)
T 3k31_A           26 MLMEGKKGVIIGVANDKSLAWGIAKAV-CAQGAEVALTYLSET   67 (296)
T ss_dssp             CTTTTCEEEEECCCSTTSHHHHHHHHH-HHTTCEEEEEESSGG
T ss_pred             hccCCCEEEEEeCCCCCCHHHHHHHHH-HHCCCEEEEEeCChH
Confidence            46899999999986   8999999999 688999999999864

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=95.56  E-value=0.017  Score=46.36  Aligned_cols=67  Identities=10%  Similarity=0.136  Sum_probs=45.1

Q ss_pred             EEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccc-cCCHHHHhhhCCEEEEe
Q 026023          167 TVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLREADVVCTL  243 (244)
Q Consensus       167 tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ell~~sD~Vvl~  243 (244)
                      +|.|.| .|.||+.+++.| ..-|.+|.+++|++....+.  .       ........... .+++.++++..|+|+.+
T Consensus         2 ~ilItGatG~iG~~l~~~L-~~~g~~V~~~~R~~~~~~~~--~-------~~~~~~~D~~d~~~~~~~~~~~~d~vi~~   70 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSL-STTDYQIYAGARKVEQVPQY--N-------NVKAVHFDVDWTPEEMAKQLHGMDAIINV   70 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHH-TTSSCEEEEEESSGGGSCCC--T-------TEEEEECCTTSCHHHHHTTTTTCSEEEEC
T ss_pred             eEEEECCCCHHHHHHHHHH-HHCCCEEEEEECCccchhhc--C-------CceEEEecccCCHHHHHHHHcCCCEEEEC
Confidence            688998 899999999998 78899999999987541100  0       00000111222 23577788899999864

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=95.56  E-value=0.036  Score=46.55  Aligned_cols=82  Identities=12%  Similarity=0.050  Sum_probs=50.4

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh----
Q 026023          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR----  235 (244)
Q Consensus       161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~----  235 (244)
                      ..+.||++.|.|. |.||+.+|+.| ..-|++|+..+++..+..++..+.+...-.+.......+...++++++++    
T Consensus        25 ~~~~~k~~lVTGas~GIG~aia~~l-a~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  103 (280)
T 4da9_A           25 TQKARPVAIVTGGRRGIGLGIARAL-AASGFDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVA  103 (280)
T ss_dssp             SCCCCCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHH
T ss_pred             hccCCCEEEEecCCCHHHHHHHHHH-HHCCCeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence            4689999999986 68999999999 68999999998754433333222111000000011123334445666666    


Q ss_pred             ---hCCEEEEe
Q 026023          236 ---EADVVCTL  243 (244)
Q Consensus       236 ---~sD~Vvl~  243 (244)
                         .-|+|+.+
T Consensus       104 ~~g~iD~lvnn  114 (280)
T 4da9_A          104 EFGRIDCLVNN  114 (280)
T ss_dssp             HHSCCCEEEEE
T ss_pred             HcCCCCEEEEC
Confidence               67988865

>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}

Probab=95.54  E-value=0.072  Score=46.41  Aligned_cols=112  Identities=16%  Similarity=0.120  Sum_probs=67.3

Q ss_pred             HHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcC-ChHHHHHH
Q 026023          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYA  181 (244)
Q Consensus       103 ~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~-G~IG~~vA  181 (244)
                      ..++-.+|+|.|..+.+.-|+=-.+=.+.+.  +..         |             .+.|.+|+++|= +++...++
T Consensus       141 ~lA~~~~vPVINag~~~~HPtQaLaDl~TI~--E~~---------G-------------~l~glkva~vGD~~nva~Sl~  196 (340)
T 4ep1_A          141 ELAKESSIPVINGLTDDHHPCQALADLMTIY--EET---------N-------------TFKGIKLAYVGDGNNVCHSLL  196 (340)
T ss_dssp             HHHHHCSSCEEEEECSSCCHHHHHHHHHHHH--HHH---------S-------------CCTTCEEEEESCCCHHHHHHH
T ss_pred             HHHHhCCCCEEeCCCCCCCcHHHHHHHHHHH--HHh---------C-------------CCCCCEEEEECCCchhHHHHH
Confidence            3344568999998775544443222222222  111         1             378999999986 57888889


Q ss_pred             HHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       182 ~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      ..+ .-||++|....|..-...++..+...+.....+   ..+....+++|.++.+|+|..
T Consensus       197 ~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G---~~v~~~~d~~eav~~aDVvyt  253 (340)
T 4ep1_A          197 LAS-AKVGMHMTVATPVGYRPNEEIVKKALAIAKETG---AEIEILHNPELAVNEADFIYT  253 (340)
T ss_dssp             HHH-HHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHC---CCEEEESCHHHHHTTCSEEEE
T ss_pred             HHH-HHcCCEEEEECCcccCCCHHHHHHHHHHHHHcC---CeEEEECCHHHHhCCCCEEEe
Confidence            997 789999999998643221222111000001111   123345799999999999975

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=95.52  E-value=0.0092  Score=53.18  Aligned_cols=76  Identities=18%  Similarity=0.424  Sum_probs=47.7

Q ss_pred             ccccccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhC
Q 026023          158 FVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (244)
Q Consensus       158 ~~~~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s  237 (244)
                      +.+....+++|+|+|-|.+|+.+++.+ +.+|.+|+.+| ++........       .........+...+.+.++.+++
T Consensus        17 ~~~~mm~~~~I~ilGgG~lg~~l~~aa-~~lG~~v~~~d-~~~~p~~~~a-------d~~~~~~~~~~d~~~l~~~a~~~   87 (403)
T 3k5i_A           17 FQGHMWNSRKVGVLGGGQLGRMLVESA-NRLNIQVNVLD-ADNSPAKQIS-------AHDGHVTGSFKEREAVRQLAKTC   87 (403)
T ss_dssp             ----CCSCCEEEEECCSHHHHHHHHHH-HHHTCEEEEEE-STTCTTGGGC-------CSSCCEESCTTCHHHHHHHHTTC
T ss_pred             EeccCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEE-CCCCcHHHhc-------cccceeecCCCCHHHHHHHHHhC
Confidence            334446789999999999999999996 99999999999 6543211110       00000001111223477888999


Q ss_pred             CEEEE
Q 026023          238 DVVCT  242 (244)
Q Consensus       238 D~Vvl  242 (244)
                      |+|+.
T Consensus        88 d~i~~   92 (403)
T 3k5i_A           88 DVVTA   92 (403)
T ss_dssp             SEEEE
T ss_pred             CEEEE
Confidence            99875

>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O*

Probab=95.51  E-value=0.019  Score=50.09  Aligned_cols=31  Identities=23%  Similarity=0.371  Sum_probs=25.9

Q ss_pred             EEEEEcCChHHHHHHHHHhcc---C-CcEEEEEcCC
Q 026023          167 TVGVIGAGRIGSAYARMMVEG---F-KMNLIYYDLY  198 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~a---f-G~~V~~~~~~  198 (244)
                      +|||+|+|+||+++.|.| ..   - +++|.+.+..
T Consensus         4 kVgI~G~G~iGr~l~r~l-~~~~~~~~~eivai~~~   38 (339)
T 2x5j_O            4 RVAINGFGRIGRNVVRAL-YESGRRAEITVVAINEL   38 (339)
T ss_dssp             EEEEECCSHHHHHHHHHH-HHTSGGGTEEEEEEECS
T ss_pred             EEEEECcCHHHHHHHHHH-HcCCCCCCEEEEEEeCC
Confidence            799999999999999997 44   2 7888877654

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=95.50  E-value=0.016  Score=48.10  Aligned_cols=40  Identities=35%  Similarity=0.345  Sum_probs=35.4

Q ss_pred             cccCCCEEEEEcC-C-hHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          161 NLLKGQTVGVIGA-G-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       161 ~~l~g~tvgIvG~-G-~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ..+.||++.|.|. | .||+.+|+.| ..-|++|+..+|+...
T Consensus        18 ~~l~~k~vlITGasg~GIG~~~a~~l-~~~G~~V~~~~r~~~~   59 (266)
T 3o38_A           18 GLLKGKVVLVTAAAGTGIGSTTARRA-LLEGADVVISDYHERR   59 (266)
T ss_dssp             STTTTCEEEESSCSSSSHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHH-HHCCCEEEEecCCHHH
Confidence            4689999999998 8 4999999999 6889999999998654

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=95.50  E-value=0.031  Score=50.34  Aligned_cols=71  Identities=18%  Similarity=0.257  Sum_probs=45.1

Q ss_pred             CEEEEEcCChHHHHHHHHHhccC-CcEEE-EEcCCcchHHHHHHhhhhhhhhcCCCCCccccccC----CHHHHhh--hC
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS----SMDEVLR--EA  237 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~af-G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~ell~--~s  237 (244)
                      .+|||||+|.||+..++.+ +.. |++|. .+|+++.. .+++.+.+    ...+...  ...+.    +++++|+  +.
T Consensus        21 ~rvgiIG~G~~g~~h~~~l-~~~~~~~lvav~d~~~~~-~~~~a~~~----~~~g~~~--~~~~~~~~~~~~~ll~~~~v   92 (444)
T 2ixa_A           21 VRIAFIAVGLRGQTHVENM-ARRDDVEIVAFADPDPYM-VGRAQEIL----KKNGKKP--AKVFGNGNDDYKNMLKDKNI   92 (444)
T ss_dssp             EEEEEECCSHHHHHHHHHH-HTCTTEEEEEEECSCHHH-HHHHHHHH----HHTTCCC--CEEECSSTTTHHHHTTCTTC
T ss_pred             ceEEEEecCHHHHHHHHHH-HhCCCcEEEEEEeCCHHH-HHHHHHHH----HhcCCCC--CceeccCCCCHHHHhcCCCC
Confidence            4899999999999999998 555 78865 56766543 23222111    0011100  11234    8999998  58


Q ss_pred             CEEEEeC
Q 026023          238 DVVCTLC  244 (244)
Q Consensus       238 D~Vvl~~  244 (244)
                      |+|++++
T Consensus        93 D~V~i~t   99 (444)
T 2ixa_A           93 DAVFVSS   99 (444)
T ss_dssp             CEEEECC
T ss_pred             CEEEEcC
Confidence            9999864

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=95.49  E-value=0.031  Score=47.23  Aligned_cols=40  Identities=25%  Similarity=0.243  Sum_probs=34.9

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .++.||++.|.|. |.||+.+|+.| ..-|++|+..+|+...
T Consensus        43 ~~l~gk~vlVTGas~GIG~aia~~l-a~~G~~V~~~~r~~~~   83 (291)
T 3ijr_A           43 EKLKGKNVLITGGDSGIGRAVSIAF-AKEGANIAIAYLDEEG   83 (291)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSCHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCchH
Confidence            4689999999986 77999999999 6889999999998653

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=95.49  E-value=0.018  Score=49.09  Aligned_cols=62  Identities=10%  Similarity=0.054  Sum_probs=44.8

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHhccCCcEEE-EEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--hCCEE
Q 026023          165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVV  240 (244)
Q Consensus       165 g~tvgIvG~-G~IG~~vA~~la~afG~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sD~V  240 (244)
                      ..+|+|+|+ |++|+.+++.+ +.+|.+++ .++|.....                 ...+..-+.+++|+..  ..|++
T Consensus         7 ~~rVaViG~sG~~G~~~~~~l-~~~g~~~V~~V~p~~~g~-----------------~~~G~~vy~sl~el~~~~~~D~v   68 (288)
T 2nu8_A            7 NTKVICQGFTGSQGTFHSEQA-IAYGTKMVGGVTPGKGGT-----------------THLGLPVFNTVREAVAATGATAS   68 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHH-HHHTCEEEEEECTTCTTC-----------------EETTEEEESSHHHHHHHHCCCEE
T ss_pred             CCEEEEECCCChHHHHHHHHH-HHCCCeEEEEeCCCcccc-----------------eeCCeeccCCHHHHhhcCCCCEE
Confidence            458999999 99999999998 67899854 666642100                 0112233578999998  89999


Q ss_pred             EEeC
Q 026023          241 CTLC  244 (244)
Q Consensus       241 vl~~  244 (244)
                      ++.+
T Consensus        69 iI~t   72 (288)
T 2nu8_A           69 VIYV   72 (288)
T ss_dssp             EECC
T ss_pred             EEec
Confidence            9863

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=95.46  E-value=0.019  Score=51.71  Aligned_cols=68  Identities=10%  Similarity=0.098  Sum_probs=46.8

Q ss_pred             CEEEEEcC----ChHHHHHHHHHhccC--CcEEE-EEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--h
Q 026023          166 QTVGVIGA----GRIGSAYARMMVEGF--KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--E  236 (244)
Q Consensus       166 ~tvgIvG~----G~IG~~vA~~la~af--G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~  236 (244)
                      .+|||||+    |.+|+..++.| +..  +++|. ++|+++.. .+.+.+.||       ..  ....+.+++++++  +
T Consensus        21 irvgiIG~g~~gG~~g~~~~~~l-~~~~~~~~lvav~d~~~~~-~~~~a~~~g-------~~--~~~~~~~~~~ll~~~~   89 (438)
T 3btv_A           21 IRVGFVGLNAAKGWAIKTHYPAI-LQLSSQFQITALYSPKIET-SIATIQRLK-------LS--NATAFPTLESFASSST   89 (438)
T ss_dssp             EEEEEESCCTTSSSTTTTHHHHH-HHTTTTEEEEEEECSSHHH-HHHHHHHTT-------CT--TCEEESSHHHHHHCSS
T ss_pred             CEEEEEcccCCCChHHHHHHHHH-HhcCCCeEEEEEEeCCHHH-HHHHHHHcC-------CC--cceeeCCHHHHhcCCC
Confidence            58999999    99999999998 666  78865 56766533 333333321       11  1123579999997  6


Q ss_pred             CCEEEEeC
Q 026023          237 ADVVCTLC  244 (244)
Q Consensus       237 sD~Vvl~~  244 (244)
                      .|+|++++
T Consensus        90 vD~V~i~t   97 (438)
T 3btv_A           90 IDMIVIAI   97 (438)
T ss_dssp             CSEEEECS
T ss_pred             CCEEEEeC
Confidence            89999874

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=95.45  E-value=0.02  Score=47.32  Aligned_cols=40  Identities=15%  Similarity=0.155  Sum_probs=35.1

Q ss_pred             ccccCCCEEEEEcC---ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          160 GNLLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       160 ~~~l~g~tvgIvG~---G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      ...+.+|++.|.|.   |.||+.+|+.| ..-|++|+..+|+.+
T Consensus         9 ~~~~~~k~vlITGa~~~~giG~~ia~~l-~~~G~~V~~~~r~~~   51 (271)
T 3ek2_A            9 MGFLDGKRILLTGLLSNRSIAYGIAKAC-KREGAELAFTYVGDR   51 (271)
T ss_dssp             CCTTTTCEEEECCCCSTTSHHHHHHHHH-HHTTCEEEEEESSGG
T ss_pred             ccccCCCEEEEeCCCCCCcHHHHHHHHH-HHcCCCEEEEecchh
Confidence            45789999999996   58999999999 688999999998854

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=95.45  E-value=0.033  Score=50.87  Aligned_cols=70  Identities=9%  Similarity=0.185  Sum_probs=47.7

Q ss_pred             CCCEEEEEcC----ChHHHHHHHHHhccC--CcEEE-EEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh-
Q 026023          164 KGQTVGVIGA----GRIGSAYARMMVEGF--KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-  235 (244)
Q Consensus       164 ~g~tvgIvG~----G~IG~~vA~~la~af--G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-  235 (244)
                      .-.+|||||+    |.+|+..++.| +..  +++|. ++|+++.. .+.+.+.||       ...  ...+.+++++++ 
T Consensus        38 ~~irvgiIG~g~~GG~~g~~h~~~l-~~~~~~~~lvav~d~~~~~-a~~~a~~~g-------~~~--~~~~~d~~ell~~  106 (479)
T 2nvw_A           38 RPIRVGFVGLTSGKSWVAKTHFLAI-QQLSSQFQIVALYNPTLKS-SLQTIEQLQ-------LKH--ATGFDSLESFAQY  106 (479)
T ss_dssp             CCEEEEEECCCSTTSHHHHTHHHHH-HHTTTTEEEEEEECSCHHH-HHHHHHHTT-------CTT--CEEESCHHHHHHC
T ss_pred             CcCEEEEEcccCCCCHHHHHHHHHH-HhcCCCeEEEEEEeCCHHH-HHHHHHHcC-------CCc--ceeeCCHHHHhcC
Confidence            3458999999    99999999998 565  78865 56766533 333333331       110  123579999996 


Q ss_pred             -hCCEEEEeC
Q 026023          236 -EADVVCTLC  244 (244)
Q Consensus       236 -~sD~Vvl~~  244 (244)
                       +.|+|++++
T Consensus       107 ~~vD~V~I~t  116 (479)
T 2nvw_A          107 KDIDMIVVSV  116 (479)
T ss_dssp             TTCSEEEECS
T ss_pred             CCCCEEEEcC
Confidence             689999874

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=95.43  E-value=0.042  Score=50.20  Aligned_cols=78  Identities=18%  Similarity=0.380  Sum_probs=48.6

Q ss_pred             CCEEEEEcCChH--HHHHHHHHh--ccC-CcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023          165 GQTVGVIGAGRI--GSAYARMMV--EGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (244)
Q Consensus       165 g~tvgIvG~G~I--G~~vA~~la--~af-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~  239 (244)
                      ..+|+|+|.|.+  |..+|..|+  +++ |-+|..+|+.... .+...+........ ......+....++++.++.||+
T Consensus         3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~-l~~~~~~~~~~l~~-~~~~~~I~~ttD~~eal~dAD~   80 (480)
T 1obb_A            3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEER-LDAILTIAKKYVEE-VGADLKFEKTMNLDDVIIDADF   80 (480)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHH-HHHHHHHHHHHHHH-TTCCCEEEEESCHHHHHTTCSE
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHH-HHHHHHHHHHHhcc-CCCCcEEEEECCHHHHhCCCCE
Confidence            358999999996  676676654  344 7899999998643 12111111111111 1123334445689999999999


Q ss_pred             EEEeC
Q 026023          240 VCTLC  244 (244)
Q Consensus       240 Vvl~~  244 (244)
                      |++++
T Consensus        81 VIiaa   85 (480)
T 1obb_A           81 VINTA   85 (480)
T ss_dssp             EEECC
T ss_pred             EEECC
Confidence            99864

>3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli}

Probab=95.42  E-value=0.11  Score=46.33  Aligned_cols=77  Identities=23%  Similarity=0.358  Sum_probs=50.0

Q ss_pred             ccCCCEEEEEcC-----C---hHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHH
Q 026023          162 LLKGQTVGVIGA-----G---RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV  233 (244)
Q Consensus       162 ~l~g~tvgIvG~-----G---~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  233 (244)
                      .|.|++|+|+|-     |   ++..+++..+ .-||++|....|..-...+++.+.........+   ..+....+++|.
T Consensus       188 ~l~Glkva~vgd~~~~~G~~nnVa~Sli~~~-~~lG~~v~~~~P~~~~~~~~~~~~a~~~a~~~G---~~i~~~~d~~ea  263 (399)
T 3q98_A          188 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLM-TRFGMDVTLAHPEGYDLIPDVVEVAKNNAKASG---GSFRQVTSMEEA  263 (399)
T ss_dssp             GGTTCEEEEECCCCSSCCCCTHHHHHHHHHH-GGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHT---CEEEEESCHHHH
T ss_pred             ccCCCEEEEEEecccccCcchHHHHHHHHHH-HHcCCEEEEECCcccCCCHHHHHHHHHHHHHcC---CEEEEEcCHHHH
Confidence            388999999973     4   7889999997 789999999998632111122110000011111   123345799999


Q ss_pred             hhhCCEEEE
Q 026023          234 LREADVVCT  242 (244)
Q Consensus       234 l~~sD~Vvl  242 (244)
                      ++.+|+|..
T Consensus       264 v~~aDvVyt  272 (399)
T 3q98_A          264 FKDADIVYP  272 (399)
T ss_dssp             HTTCSEEEE
T ss_pred             hCCCCEEEe
Confidence            999999964

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=95.42  E-value=0.029  Score=50.81  Aligned_cols=69  Identities=14%  Similarity=0.197  Sum_probs=51.9

Q ss_pred             ccCCCEEEEEcCC----------hHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHH
Q 026023          162 LLKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD  231 (244)
Q Consensus       162 ~l~g~tvgIvG~G----------~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  231 (244)
                      .+.|++|+|+|+-          .=...+++.| ...|++|.+|||...+....   .|+          ......++++
T Consensus       315 ~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L-~~~g~~v~~~DP~~~~~~~~---~~~----------~~~~~~~~~~  380 (450)
T 3gg2_A          315 NVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKL-LEVGCRVRVYDPVAMKEAQK---RLG----------DKVEYTTDMY  380 (450)
T ss_dssp             CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHH-HHTTCEEEEECSSCHHHHHH---HHG----------GGSEECSSHH
T ss_pred             cCCCCEEEEEeeeeCCCCcccccChHHHHHHHH-HHCCCEEEEECCCCcHHHHH---hcC----------ccceecCCHH
Confidence            5799999999984          3468999999 89999999999987542221   121          0123456899


Q ss_pred             HHhhhCCEEEEeC
Q 026023          232 EVLREADVVCTLC  244 (244)
Q Consensus       232 ell~~sD~Vvl~~  244 (244)
                      +.++.+|.|++.+
T Consensus       381 ~~~~~ad~~vi~t  393 (450)
T 3gg2_A          381 DAVRGAEALFHVT  393 (450)
T ss_dssp             HHTTTCSCEEECS
T ss_pred             HHhcCCCEEEEcc
Confidence            9999999999863

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=95.35  E-value=0.026  Score=46.35  Aligned_cols=40  Identities=23%  Similarity=0.302  Sum_probs=35.0

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ..+.||++.|.|. |.||+.+|+.| ..-|++|+.++|+...
T Consensus         5 ~~~~~k~vlITGas~giG~~~a~~l-~~~G~~V~~~~r~~~~   45 (253)
T 3qiv_A            5 MRFENKVGIVTGSGGGIGQAYAEAL-AREGAAVVVADINAEA   45 (253)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             cccCCCEEEEECCCChHHHHHHHHH-HHCCCEEEEEcCCHHH
Confidence            4588999999986 78999999999 6889999999998654

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=95.33  E-value=0.012  Score=51.41  Aligned_cols=30  Identities=27%  Similarity=0.231  Sum_probs=24.9

Q ss_pred             EEEEEcCChHHHHHHHHHhccC-CcEEEEEcC
Q 026023          167 TVGVIGAGRIGSAYARMMVEGF-KMNLIYYDL  197 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~af-G~~V~~~~~  197 (244)
                      +|||+|+|+||+.+++.| ... +++|.+++.
T Consensus         4 kVgI~G~G~IGr~v~r~l-~~~~~~evvaV~d   34 (343)
T 2yyy_A            4 KVLINGYGSIGKRVADAV-SMQDDMEVIGVTK   34 (343)
T ss_dssp             EEEEECCSHHHHHHHHHH-HHSSSEEEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHH-HhCCCceEEEEec
Confidence            799999999999999997 444 688777654

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=95.32  E-value=0.032  Score=47.67  Aligned_cols=73  Identities=14%  Similarity=0.181  Sum_probs=46.1

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCc--EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      +|+|+|.|.+|..+|..| ..-|.  +|..+|+.+........+ ........ .....+....+ .+.++.||+|++.
T Consensus         2 kI~ViGaG~vG~~la~~l-~~~~~~~~v~L~D~~~~~~~g~~~d-l~~~~~~~-~~~~~i~~t~d-~~a~~~aDiVVia   76 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTC-LLNLDVDEIALVDIAEDLAVGEAMD-LAHAAAGI-DKYPKIVGGAD-YSLLKGSEIIVVT   76 (294)
T ss_dssp             EEEEECCSHHHHHHHHHH-HHHSCCSEEEEECSSHHHHHHHHHH-HHHHHHTT-TCCCEEEEESC-GGGGTTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHH-HhCCCCCeEEEEECChHHHHHHHHH-HHhhhhhc-CCCCEEEEeCC-HHHhCCCCEEEEC
Confidence            699999999999999988 56676  899999987442111111 00000000 01122222346 8899999999986

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=95.32  E-value=0.021  Score=49.63  Aligned_cols=75  Identities=27%  Similarity=0.370  Sum_probs=45.4

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCCc--EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      ..+|+|+|.|.+|..+|..| ...|.  +|..+|...........+ +.... .........  ..+-.+.++.||+|++
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l-~~~~~~~~l~l~D~~~~k~~g~a~D-L~~~~-~~~~~~v~i--~~~~~~a~~~aDvVvi   79 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFAL-INQGITDELVVIDVNKEKAMGDVMD-LNHGK-AFAPQPVKT--SYGTYEDCKDADIVCI   79 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHH-HHHTCCSEEEEECSCHHHHHHHHHH-HHHTG-GGSSSCCEE--EEECGGGGTTCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHH-HhCCCCceEEEEecchHHHHHHHHH-HHhcc-ccccCCeEE--EeCcHHHhCCCCEEEE
Confidence            46899999999999999987 56676  899999975431111111 10000 000001111  1233567999999998


Q ss_pred             eC
Q 026023          243 LC  244 (244)
Q Consensus       243 ~~  244 (244)
                      +.
T Consensus        80 ~a   81 (326)
T 3pqe_A           80 CA   81 (326)
T ss_dssp             CC
T ss_pred             ec
Confidence            63

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=95.32  E-value=0.022  Score=49.54  Aligned_cols=75  Identities=9%  Similarity=0.017  Sum_probs=47.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCc--EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC  241 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv  241 (244)
                      ..++|+|+|.|.+|..+|..+ ..-|+  +|..+|...........+-... . ... .........+.++ +++||+|+
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~l-a~~g~~~ev~L~Di~~~~~~g~a~DL~~~-~-~~~-~~~~i~~t~d~~~-~~daDiVI   94 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISV-LMKDLADEVALVDVMEDKLKGEMMDLEHG-S-LFL-HTAKIVSGKDYSV-SAGSKLVV   94 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHH-HHHCCCSEEEEECSCHHHHHHHHHHHHHH-G-GGS-CCSEEEEESSSCS-CSSCSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HhCCCCCeEEEEECCHHHHHHHHHHhhhh-h-hcc-cCCeEEEcCCHHH-hCCCCEEE
Confidence            567999999999999999987 56676  8999999764311111110000 0 000 0112223346666 99999999


Q ss_pred             Ee
Q 026023          242 TL  243 (244)
Q Consensus       242 l~  243 (244)
                      ++
T Consensus        95 it   96 (330)
T 3ldh_A           95 IT   96 (330)
T ss_dssp             EC
T ss_pred             Ee
Confidence            86

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=95.31  E-value=0.028  Score=47.17  Aligned_cols=38  Identities=18%  Similarity=0.202  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEcC---ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       162 ~l~g~tvgIvG~---G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      .+.||++.|.|.   |.||+.+|+.| ..-|++|+..+|+..
T Consensus        18 ~l~~k~vlVTGas~~~gIG~~ia~~l-~~~G~~V~~~~r~~~   58 (285)
T 2p91_A           18 LLEGKRALITGVANERSIAYGIAKSF-HREGAQLAFTYATPK   58 (285)
T ss_dssp             TTTTCEEEECCCSSTTSHHHHHHHHH-HHTTCEEEEEESSGG
T ss_pred             ccCCCEEEEECCCCCCcHHHHHHHHH-HHcCCEEEEEeCCHH
Confidence            488999999997   58999999999 578999999999864

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=95.30  E-value=0.036  Score=48.36  Aligned_cols=30  Identities=30%  Similarity=0.448  Sum_probs=25.7

Q ss_pred             EEEEEcCChHHHHHHHHHhccC-CcEEEEEcC
Q 026023          167 TVGVIGAGRIGSAYARMMVEGF-KMNLIYYDL  197 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~af-G~~V~~~~~  197 (244)
                      +|||+|+|+||+.++|.| ... +++|.++..
T Consensus         5 kVgI~G~GrIGr~l~R~l-~~~p~vevvaI~d   35 (337)
T 3e5r_O            5 KIGINGFGRIGRLVARVA-LQSEDVELVAVND   35 (337)
T ss_dssp             EEEEECCSHHHHHHHHHH-HTCSSEEEEEEEC
T ss_pred             EEEEECcCHHHHHHHHHH-hCCCCeEEEEEEC
Confidence            799999999999999997 444 788888775

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=95.29  E-value=0.019  Score=47.84  Aligned_cols=39  Identities=23%  Similarity=0.285  Sum_probs=34.4

Q ss_pred             ccCCCEEEEEc---CChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIG---AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG---~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .+.||++.|.|   .|.||+++|+.| ..-|++|+..+|+...
T Consensus         4 ~l~~k~vlVTGa~~s~gIG~aia~~l-~~~G~~V~~~~r~~~~   45 (269)
T 2h7i_A            4 LLDGKRILVSGIITDSSIAFHIARVA-QEQGAQLVLTGFDRLR   45 (269)
T ss_dssp             TTTTCEEEECCCSSTTSHHHHHHHHH-HHTTCEEEEEECSCHH
T ss_pred             ccCCCEEEEECCCCCCchHHHHHHHH-HHCCCEEEEEecChHH
Confidence            47899999999   589999999999 6889999999998644

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=95.29  E-value=0.036  Score=47.55  Aligned_cols=74  Identities=15%  Similarity=0.222  Sum_probs=46.4

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      .+|+|+|.|.+|..+|..| ...|. .|..+|...... +.....+...... ...........+. +.++.||+|+++
T Consensus         3 ~kI~VIGaG~vG~~~a~~l-a~~g~~~v~L~Di~~~~~-~g~~~dl~~~~~~-~~~~~~i~~t~d~-~a~~~aD~Vi~a   77 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWL-AAKELGDIVLLDIVEGVP-QGKALDLYEASPI-EGFDVRVTGTNNY-ADTANSDVIVVT   77 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSSSSHH-HHHHHHHHTTHHH-HTCCCCEEEESCG-GGGTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHH-HHCCCCeEEEEeCCccHH-HHHHHhHHHhHhh-cCCCeEEEECCCH-HHHCCCCEEEEc
Confidence            4899999999999999998 57775 899999876432 1111111100000 0011222233566 679999999986

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=95.29  E-value=0.023  Score=48.46  Aligned_cols=37  Identities=16%  Similarity=0.195  Sum_probs=32.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .|++|.|.|. |.||+.+++.| ..-|.+|.+++|+...
T Consensus         2 ~~~~vlVtGatG~iG~~l~~~L-~~~G~~V~~~~r~~~~   39 (345)
T 2z1m_A            2 SGKRALITGIRGQDGAYLAKLL-LEKGYEVYGADRRSGE   39 (345)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHH-HHTTCEEEEECSCCST
T ss_pred             CCCEEEEECCCChHHHHHHHHH-HHCCCEEEEEECCCcc
Confidence            5789999997 99999999998 6789999999998653

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=95.28  E-value=0.038  Score=47.88  Aligned_cols=75  Identities=19%  Similarity=0.306  Sum_probs=47.5

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHH--HHhhhhhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEK--FVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (244)
Q Consensus       163 l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~  239 (244)
                      ....+|+|+|.|.+|..+|..| ..-|. +|..+|..+......  .........    .....+....+. +.++.||+
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l-~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~----~~~~~v~~t~d~-~a~~~aDi   78 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLA-GLKELGDVVLFDIAEGTPQGKGLDIAESSPVD----GFDAKFTGANDY-AAIEGADV   78 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHH-HHTTCCEEEEECSSSSHHHHHHHHHHHHHHHH----TCCCCEEEESSG-GGGTTCSE
T ss_pred             CcCCEEEEECCCHHHHHHHHHH-HhCCCCeEEEEeCCchhHHHHHHHHhchhhhc----CCCCEEEEeCCH-HHHCCCCE
Confidence            3567999999999999999987 56677 999999987542111  111110000    011122222455 78999999


Q ss_pred             EEEe
Q 026023          240 VCTL  243 (244)
Q Consensus       240 Vvl~  243 (244)
                      |+++
T Consensus        79 VIia   82 (324)
T 3gvi_A           79 VIVT   82 (324)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            9986

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=95.23  E-value=0.032  Score=46.70  Aligned_cols=40  Identities=25%  Similarity=0.169  Sum_probs=33.8

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .++.||++.|.|. |.||+++|+.| ..-|++|+..+++..+
T Consensus        27 ~~l~gk~~lVTGas~GIG~aia~~l-a~~G~~V~~~~~~~~~   67 (271)
T 3v2g_A           27 ISLAGKTAFVTGGSRGIGAAIAKRL-ALEGAAVALTYVNAAE   67 (271)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSCHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCCHH
Confidence            4689999999986 67999999999 6889999998766543

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=95.22  E-value=0.0066  Score=50.58  Aligned_cols=69  Identities=16%  Similarity=0.136  Sum_probs=47.5

Q ss_pred             CCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       164 ~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      .+|+|.|.| .|.||+.+++.| ..-|.+|...+|+.........          ..........+++.++++..|+|+.
T Consensus         2 ~~k~vlVTGasg~IG~~la~~L-~~~G~~V~~~~r~~~~~~~~~~----------~~~~~Dl~d~~~~~~~~~~~D~vi~   70 (267)
T 3rft_A            2 AMKRLLVTGAAGQLGRVMRERL-APMAEILRLADLSPLDPAGPNE----------ECVQCDLADANAVNAMVAGCDGIVH   70 (267)
T ss_dssp             CEEEEEEESTTSHHHHHHHHHT-GGGEEEEEEEESSCCCCCCTTE----------EEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HhcCCEEEEEecCCccccCCCC----------EEEEcCCCCHHHHHHHHcCCCEEEE
Confidence            467899998 799999999998 6889999999998643110000          0001122233467788999999875


Q ss_pred             e
Q 026023          243 L  243 (244)
Q Consensus       243 ~  243 (244)
                      +
T Consensus        71 ~   71 (267)
T 3rft_A           71 L   71 (267)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=95.22  E-value=0.014  Score=50.25  Aligned_cols=80  Identities=15%  Similarity=0.134  Sum_probs=49.6

Q ss_pred             ccCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhh-----hcCCCCCccccccCCHHHHhh
Q 026023          162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL-----KANGEQPVTWKRASSMDEVLR  235 (244)
Q Consensus       162 ~l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~ell~  235 (244)
                      .+.+++|.|.| .|.||+.+++.| ..-|.+|++++|+.....+... .+....     .............+++.++++
T Consensus        22 ~~~~~~vlVtGatG~iG~~l~~~L-~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~   99 (351)
T 3ruf_A           22 IFSPKTWLITGVAGFIGSNLLEKL-LKLNQVVIGLDNFSTGHQYNLD-EVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMK   99 (351)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECCSSCCHHHHH-HHHHTSCHHHHTTEEEEECCTTCHHHHHHHTT
T ss_pred             CCCCCeEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCCCCchhhhh-hhhhccccccCCceEEEEccCCCHHHHHHHhc
Confidence            35788999999 599999999998 7889999999997643211110 000000     000000111222345778889


Q ss_pred             hCCEEEEe
Q 026023          236 EADVVCTL  243 (244)
Q Consensus       236 ~sD~Vvl~  243 (244)
                      .+|+|+-+
T Consensus       100 ~~d~Vih~  107 (351)
T 3ruf_A          100 GVDHVLHQ  107 (351)
T ss_dssp             TCSEEEEC
T ss_pred             CCCEEEEC
Confidence            99998754

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=95.20  E-value=0.028  Score=46.36  Aligned_cols=37  Identities=27%  Similarity=0.384  Sum_probs=33.0

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       163 l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      +.||++.|.|. |.||+.+|+.| ..-|++|+..+|+..
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l-~~~G~~V~~~~r~~~   39 (255)
T 2q2v_A            2 LKGKTALVTGSTSGIGLGIAQVL-ARAGANIVLNGFGDP   39 (255)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHH-HHTTCEEEEECSSCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCch
Confidence            67899999986 89999999999 688999999999865

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=95.19  E-value=0.022  Score=51.44  Aligned_cols=63  Identities=17%  Similarity=0.205  Sum_probs=48.3

Q ss_pred             cCCCEEEEEcCC----------hHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHH
Q 026023          163 LKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE  232 (244)
Q Consensus       163 l~g~tvgIvG~G----------~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e  232 (244)
                      ..|++|+|+|+-          .=...++++| +..|++|.+|||.....  ++               .+.....++++
T Consensus       330 ~~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L-~~~G~~V~~~DP~~~~~--~~---------------~~~~~~~~~~~  391 (432)
T 3pid_A          330 RKPKVVGVYRLIMKSGSDNFRASSIQGIMKRI-KAKGIPVIIYEPVMQED--EF---------------FNSRVVRDLNA  391 (432)
T ss_dssp             TCCSSEEEECC-----------CHHHHHHHHH-HHTTCCEEEECTTCCSS--EE---------------TTEEECCCHHH
T ss_pred             hcCCEEEEEeeEeCCCCcchhcChHHHHHHHH-HhcCCEEEEECCCCChh--hc---------------CCceEECCHHH
Confidence            358999999975          3368899999 89999999999987541  11               11223579999


Q ss_pred             HhhhCCEEEEe
Q 026023          233 VLREADVVCTL  243 (244)
Q Consensus       233 ll~~sD~Vvl~  243 (244)
                      +++.||+|+++
T Consensus       392 ~~~~aD~iv~~  402 (432)
T 3pid_A          392 FKQEADVIISN  402 (432)
T ss_dssp             HHHHCSEEECS
T ss_pred             HHhcCCEEEEC
Confidence            99999999875

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=95.19  E-value=0.023  Score=47.08  Aligned_cols=41  Identities=27%  Similarity=0.275  Sum_probs=35.2

Q ss_pred             ccccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          160 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       160 ~~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ...+.|+++.|.|. |.||+.+|+.| ..-|++|+..+|+...
T Consensus        24 m~~l~~k~vlITGas~gIG~~la~~l-~~~G~~V~~~~r~~~~   65 (262)
T 3rkr_A           24 MSSLSGQVAVVTGASRGIGAAIARKL-GSLGARVVLTARDVEK   65 (262)
T ss_dssp             -CTTTTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             hhccCCCEEEEECCCChHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            35689999999985 88999999999 6889999999998654

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=95.19  E-value=0.034  Score=47.74  Aligned_cols=65  Identities=9%  Similarity=-0.005  Sum_probs=44.2

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhccCCcEEE-EEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh---------
Q 026023          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---------  234 (244)
Q Consensus       166 ~tvgIvG~-G~IG~~vA~~la~afG~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---------  234 (244)
                      .++||||+ |.||+..++.+ +..+.++. ++|+++...  ...+.           ......+.++++++         
T Consensus         4 irvgiIG~gG~i~~~h~~~l-~~~~~~lvav~d~~~~~~--~~~~~-----------~~~~~~~~~~~~ll~~~~~l~~~   69 (312)
T 3o9z_A            4 TRFALTGLAGYIAPRHLKAI-KEVGGVLVASLDPATNVG--LVDSF-----------FPEAEFFTEPEAFEAYLEDLRDR   69 (312)
T ss_dssp             CEEEEECTTSSSHHHHHHHH-HHTTCEEEEEECSSCCCG--GGGGT-----------CTTCEEESCHHHHHHHHHHHHHT
T ss_pred             eEEEEECCChHHHHHHHHHH-HhCCCEEEEEEcCCHHHH--HHHhh-----------CCCCceeCCHHHHHHHhhhhccc
Confidence            48999999 78999999998 67798855 556655431  11110           11223456899998         


Q ss_pred             -hhCCEEEEeC
Q 026023          235 -READVVCTLC  244 (244)
Q Consensus       235 -~~sD~Vvl~~  244 (244)
                       ++.|+|+++.
T Consensus        70 ~~~vD~V~I~t   80 (312)
T 3o9z_A           70 GEGVDYLSIAS   80 (312)
T ss_dssp             TCCCSEEEECS
T ss_pred             CCCCcEEEECC
Confidence             6789999863

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*

Probab=95.19  E-value=0.034  Score=48.52  Aligned_cols=31  Identities=26%  Similarity=0.425  Sum_probs=25.3

Q ss_pred             EEEEEcCChHHHHHHHHHhccC---CcEEEEEcCC
Q 026023          167 TVGVIGAGRIGSAYARMMVEGF---KMNLIYYDLY  198 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~af---G~~V~~~~~~  198 (244)
                      +|||+|+|+||+.+.|.| ..-   +++|.+++..
T Consensus         4 kVgI~G~G~IGr~v~r~l-~~~~~~~~evvaInd~   37 (339)
T 3b1j_A            4 RVAINGFGRIGRNFLRCW-FGRQNTDLEVVAINNT   37 (339)
T ss_dssp             EEEEECCSHHHHHHHHHH-HHCSCCSEEEEEEECS
T ss_pred             EEEEECCCHHHHHHHHHH-HhcCCCCeEEEEEecC
Confidence            799999999999999997 443   4888776643

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=95.19  E-value=0.034  Score=47.81  Aligned_cols=65  Identities=18%  Similarity=0.216  Sum_probs=43.8

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhccCCcEEE-EEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh---------
Q 026023          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---------  234 (244)
Q Consensus       166 ~tvgIvG~-G~IG~~vA~~la~afG~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---------  234 (244)
                      .++||||+ |.||+..++.+ +..|.++. ++|+++..  +.....           ......+.++++++         
T Consensus         4 irvgiIG~gG~i~~~h~~~l-~~~~~~lvav~d~~~~~--~~~~~~-----------~~~~~~~~~~~~ll~~~~~l~~~   69 (318)
T 3oa2_A            4 KNFALIGAAGYIAPRHMRAI-KDTGNCLVSAYDINDSV--GIIDSI-----------SPQSEFFTEFEFFLDHASNLKRD   69 (318)
T ss_dssp             CEEEEETTTSSSHHHHHHHH-HHTTCEEEEEECSSCCC--GGGGGT-----------CTTCEEESSHHHHHHHHHHHTTS
T ss_pred             eEEEEECCCcHHHHHHHHHH-HhCCCEEEEEEcCCHHH--HHHHhh-----------CCCCcEECCHHHHHHhhhhhhhc
Confidence            48999999 79999999998 67798755 45555432  111110           11223456899988         


Q ss_pred             --hhCCEEEEeC
Q 026023          235 --READVVCTLC  244 (244)
Q Consensus       235 --~~sD~Vvl~~  244 (244)
                        ++.|+|+++.
T Consensus        70 ~~~~vD~V~I~t   81 (318)
T 3oa2_A           70 SATALDYVSICS   81 (318)
T ss_dssp             TTTSCCEEEECS
T ss_pred             cCCCCcEEEECC
Confidence              5689999863

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=95.18  E-value=0.034  Score=46.25  Aligned_cols=35  Identities=14%  Similarity=0.083  Sum_probs=32.0

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ++|.|.|.|.||+.+++.| ..-|.+|.+++|++..
T Consensus         6 ~~ilVtGaG~iG~~l~~~L-~~~g~~V~~~~r~~~~   40 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRAL-APQGWRIIGTSRNPDQ   40 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHH-GGGTCEEEEEESCGGG
T ss_pred             CcEEEECCcHHHHHHHHHH-HHCCCEEEEEEcChhh
Confidence            6899999999999999998 7789999999998754

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=95.18  E-value=0.027  Score=47.61  Aligned_cols=37  Identities=24%  Similarity=0.249  Sum_probs=32.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcch
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~  201 (244)
                      .++++.|+|.|..|+.++..| ...|+ +|..++|+...
T Consensus       118 ~~~~vlvlGaGgaarav~~~L-~~~G~~~i~v~nRt~~k  155 (271)
T 1npy_A          118 KNAKVIVHGSGGMAKAVVAAF-KNSGFEKLKIYARNVKT  155 (271)
T ss_dssp             TTSCEEEECSSTTHHHHHHHH-HHTTCCCEEEECSCHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEeCCHHH
Confidence            467899999999999999998 78998 79999998643

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=95.18  E-value=0.038  Score=46.38  Aligned_cols=40  Identities=18%  Similarity=0.067  Sum_probs=35.0

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .++.||++.|.|. |.||+.+|+.| ..-|++|+..+|+...
T Consensus        28 ~~l~gk~~lVTGas~GIG~aia~~l-a~~G~~V~~~~r~~~~   68 (276)
T 3r1i_A           28 FDLSGKRALITGASTGIGKKVALAY-AEAGAQVAVAARHSDA   68 (276)
T ss_dssp             GCCTTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESSGGG
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            4689999999985 78999999999 6889999999998654

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=95.17  E-value=0.031  Score=46.66  Aligned_cols=38  Identities=21%  Similarity=0.238  Sum_probs=33.7

Q ss_pred             ccCCCEEEEEcC---ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       162 ~l~g~tvgIvG~---G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      .+.||++.|.|.   |.||+.+|+.| ..-|++|+..+|+..
T Consensus         3 ~l~~k~vlVTGas~~~gIG~~~a~~l-~~~G~~V~~~~r~~~   43 (275)
T 2pd4_A            3 FLKGKKGLIVGVANNKSIAYGIAQSC-FNQGATLAFTYLNES   43 (275)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHH-HTTTCEEEEEESSTT
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHH-HHCCCEEEEEeCCHH
Confidence            378999999997   69999999999 678999999999864

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=95.17  E-value=0.024  Score=46.67  Aligned_cols=36  Identities=19%  Similarity=0.202  Sum_probs=31.7

Q ss_pred             ccCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCC
Q 026023          162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLY  198 (244)
Q Consensus       162 ~l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~  198 (244)
                      ++.|+++.|.| .|.||+.+++.| ..-|++|+..+|+
T Consensus         4 ~l~~k~vlITGasggiG~~~a~~l-~~~G~~V~~~~r~   40 (261)
T 1gee_A            4 DLEGKVVVITGSSTGLGKSMAIRF-ATEKAKVVVNYRS   40 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHH-HHTTCEEEEEESS
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHH-HHCCCEEEEEcCC
Confidence            47899999997 689999999999 6789999999993

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=95.17  E-value=0.035  Score=50.29  Aligned_cols=75  Identities=17%  Similarity=0.207  Sum_probs=49.3

Q ss_pred             CCCEEEEEcCChH--HHHHHHHHhc--c-CCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCC
Q 026023          164 KGQTVGVIGAGRI--GSAYARMMVE--G-FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (244)
Q Consensus       164 ~g~tvgIvG~G~I--G~~vA~~la~--a-fG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (244)
                      .+.+|+|+|.|..  |..++..|++  . .| +|..+|..+.. .+. ....+....+   ....+....++++.++.||
T Consensus         4 ~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~-le~-~~~~~~~l~~---~~~~I~~TtD~~eAl~dAD   77 (450)
T 3fef_A            4 DQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEA-AQK-NEVIGNHSGN---GRWRYEAVSTLKKALSAAD   77 (450)
T ss_dssp             CCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHH-HHH-HHHHHTTSTT---SCEEEEEESSHHHHHTTCS
T ss_pred             CCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHH-HHH-HHHHHHHHhc---cCCeEEEECCHHHHhcCCC
Confidence            3468999999996  6788777643  2 36 99999998643 111 1112221211   2334455679999999999


Q ss_pred             EEEEeC
Q 026023          239 VVCTLC  244 (244)
Q Consensus       239 ~Vvl~~  244 (244)
                      +|++++
T Consensus        78 fVI~ai   83 (450)
T 3fef_A           78 IVIISI   83 (450)
T ss_dssp             EEEECC
T ss_pred             EEEecc
Confidence            999864

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=95.16  E-value=0.035  Score=47.51  Aligned_cols=73  Identities=19%  Similarity=0.142  Sum_probs=45.2

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCc--EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      .+|+|+|.|.+|..+|..| ..-|.  +|..+|+..... +.....+.... .. ........ .+. +.++.||+|+++
T Consensus         1 mkI~VIGaG~vG~~la~~l-a~~g~~~eV~L~D~~~~~~-~~~~~~l~~~~-~~-~~~~~i~~-~~~-~a~~~aDvVIi~   74 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFAL-VLRGSCSELVLVDRDEDRA-QAEAEDIAHAA-PV-SHGTRVWH-GGH-SELADAQVVILT   74 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCCSEEEEECSSHHHH-HHHHHHHTTSC-CT-TSCCEEEE-ECG-GGGTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHH-HhCCCCCEEEEEeCCHHHH-HHHHHhhhhhh-hh-cCCeEEEE-CCH-HHhCCCCEEEEc
Confidence            3799999999999999998 57788  999999986421 11111110000 00 01111221 343 568999999986


Q ss_pred             C
Q 026023          244 C  244 (244)
Q Consensus       244 ~  244 (244)
                      .
T Consensus        75 ~   75 (304)
T 2v6b_A           75 A   75 (304)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...

Probab=95.16  E-value=0.063  Score=46.25  Aligned_cols=72  Identities=21%  Similarity=0.410  Sum_probs=51.3

Q ss_pred             cCCCEEEEEcC---ChHHHHHHHHHhccC-CcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCC
Q 026023          163 LKGQTVGVIGA---GRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (244)
Q Consensus       163 l~g~tvgIvG~---G~IG~~vA~~la~af-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (244)
                      +.|.+|+++|=   |++..+++..+ .-| |++|....|..-...++..+.    ++..+   ..+....+++|.++.+|
T Consensus       152 l~gl~va~vGD~~~~rva~Sl~~~~-~~~~g~~v~~~~P~~~~~~~~~~~~----~~~~g---~~~~~~~d~~eav~~aD  223 (310)
T 3csu_A          152 LDNLHVAMVGDLKYGRTVHSLTQAL-AKFDGNRFYFIAPDALAMPQYILDM----LDEKG---IAWSLHSSIEEVMAEVD  223 (310)
T ss_dssp             SSSCEEEEESCTTTCHHHHHHHHHH-HTSSSCEEEEECCGGGCCCHHHHHH----HHHTT---CCEEECSCGGGTTTTCS
T ss_pred             cCCcEEEEECCCCCCchHHHHHHHH-HhCCCCEEEEECCcccccCHHHHHH----HHHcC---CeEEEEcCHHHHhcCCC
Confidence            78999999998   59999999997 688 999999999653222222111    11112   12334578999999999


Q ss_pred             EEEE
Q 026023          239 VVCT  242 (244)
Q Consensus       239 ~Vvl  242 (244)
                      +|..
T Consensus       224 vvyt  227 (310)
T 3csu_A          224 ILYM  227 (310)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9975

>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*

Probab=95.14  E-value=0.06  Score=46.81  Aligned_cols=33  Identities=24%  Similarity=0.354  Sum_probs=27.4

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~  199 (244)
                      +|||+|+|+||+++.|.|..--.++|.+.+...
T Consensus         3 kVgI~G~G~iG~~l~R~l~~~~~veiv~i~~~~   35 (330)
T 1gad_O            3 KVGINGFGRIGRIVFRAAQKRSDIEIVAINDLL   35 (330)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEECSS
T ss_pred             EEEEECcCHHHHHHHHHHHcCCCeEEEEEcCCC
Confidence            799999999999999997444568888887653

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=95.13  E-value=0.047  Score=47.24  Aligned_cols=76  Identities=18%  Similarity=0.243  Sum_probs=46.1

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      ...+|+|+|.|.+|..+|..| ..-|+ +|..+|..+........+ +....... .....+....+ .+.++.||+|++
T Consensus         4 ~~~kI~iiGaG~vG~~~a~~l-~~~~~~~v~l~Di~~~~~~g~a~d-L~~~~~~~-~~~~~v~~t~d-~~a~~~aDvVIi   79 (321)
T 3p7m_A            4 ARKKITLVGAGNIGGTLAHLA-LIKQLGDVVLFDIAQGMPNGKALD-LLQTCPIE-GVDFKVRGTND-YKDLENSDVVIV   79 (321)
T ss_dssp             CCCEEEEECCSHHHHHHHHHH-HHTTCCEEEEECSSSSHHHHHHHH-HHTTHHHH-TCCCCEEEESC-GGGGTTCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HhCCCceEEEEeCChHHHHHHHHH-HHhhhhhc-CCCcEEEEcCC-HHHHCCCCEEEE
Confidence            346899999999999999987 45555 999999987532111111 10000000 00112222234 578999999998


Q ss_pred             e
Q 026023          243 L  243 (244)
Q Consensus       243 ~  243 (244)
                      .
T Consensus        80 ~   80 (321)
T 3p7m_A           80 T   80 (321)
T ss_dssp             C
T ss_pred             c
Confidence            6

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=95.12  E-value=0.017  Score=48.39  Aligned_cols=57  Identities=19%  Similarity=0.205  Sum_probs=39.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      .-.+|+++|+|+||+.+++.  +  ++++.++-. .+.                ++  +++....++++++++.|+|+-+
T Consensus        11 ~~~rV~i~G~GaIG~~v~~~--~--~leLv~v~~-~k~----------------ge--lgv~a~~d~d~lla~pD~VVe~   67 (253)
T 1j5p_A           11 HHMTVLIIGMGNIGKKLVEL--G--NFEKIYAYD-RIS----------------KD--IPGVVRLDEFQVPSDVSTVVEC   67 (253)
T ss_dssp             CCCEEEEECCSHHHHHHHHH--S--CCSEEEEEC-SSC----------------CC--CSSSEECSSCCCCTTCCEEEEC
T ss_pred             ccceEEEECcCHHHHHHHhc--C--CcEEEEEEe-ccc----------------cc--cCceeeCCHHHHhhCCCEEEEC
Confidence            44589999999999999996  3  777544332 211                11  1233457899999999999865

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=95.11  E-value=0.026  Score=46.12  Aligned_cols=40  Identities=20%  Similarity=0.238  Sum_probs=34.5

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ..+.|+++.|.|. |.||+.+++.| ..-|++|+..+|+...
T Consensus         7 ~~~~~~~vlVtGasggiG~~la~~l-~~~G~~V~~~~r~~~~   47 (255)
T 1fmc_A            7 LRLDGKCAIITGAGAGIGKEIAITF-ATAGASVVVSDINADA   47 (255)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHH-HTTTCEEEEEESCHHH
T ss_pred             CCCCCCEEEEECCccHHHHHHHHHH-HHCCCEEEEEcCCHHH
Confidence            3578999999985 89999999999 6889999999998643

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=95.10  E-value=0.041  Score=47.42  Aligned_cols=68  Identities=16%  Similarity=0.236  Sum_probs=42.3

Q ss_pred             CEEEEEcCChHHHHHHHHHhc-cCCcEEE-EEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh-----hCC
Q 026023          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EAD  238 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~-afG~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~sD  238 (244)
                      .+|||+|+|.||+.+++.+.+ .-++++. .+|+++.....+..+.+|       .   . ...++.+++++     +.|
T Consensus         5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g-------~---~-~~~~~~e~ll~~~~~~~iD   73 (312)
T 1nvm_B            5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMG-------V---T-TTYAGVEGLIKLPEFADID   73 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTT-------C---C-EESSHHHHHHHSGGGGGEE
T ss_pred             CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcC-------C---C-cccCCHHHHHhccCCCCCc
Confidence            489999999999999999734 4567654 566664331122222221       1   1 12356788875     479


Q ss_pred             EEEEeC
Q 026023          239 VVCTLC  244 (244)
Q Consensus       239 ~Vvl~~  244 (244)
                      +|+++.
T Consensus        74 vV~~at   79 (312)
T 1nvm_B           74 FVFDAT   79 (312)
T ss_dssp             EEEECS
T ss_pred             EEEECC
Confidence            998863

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=95.09  E-value=0.0071  Score=50.04  Aligned_cols=32  Identities=13%  Similarity=0.147  Sum_probs=29.7

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCC
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~  198 (244)
                      .+|||||+|.||..+|+.| +.-|.+|.+|++.
T Consensus         7 mkI~IIG~G~~G~sLA~~L-~~~G~~V~~~~~~   38 (232)
T 3dfu_A            7 LRVGIFDDGSSTVNMAEKL-DSVGHYVTVLHAP   38 (232)
T ss_dssp             CEEEEECCSCCCSCHHHHH-HHTTCEEEECSSG
T ss_pred             cEEEEEeeCHHHHHHHHHH-HHCCCEEEEecCH
Confidence            5899999999999999999 7889999999985

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=95.08  E-value=0.069  Score=48.27  Aligned_cols=78  Identities=17%  Similarity=0.155  Sum_probs=45.5

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhh-hhhhhcC---C---C----CCccccccCCHHHHh
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY-GQFLKAN---G---E----QPVTWKRASSMDEVL  234 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~-~~~~~~~---~---~----~~~~~~~~~~l~ell  234 (244)
                      .+|||||+|.||+..++.+.+.-|++|.++.....+..++..+.+ |....-.   .   .    .......++++++++
T Consensus        24 IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~eeLL  103 (446)
T 3upl_A           24 IRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDNDLIL  103 (446)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHHHHH
T ss_pred             eEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCHHHHh
Confidence            489999999999999988744457886655443333334333221 3000000   0   0    000122357999999


Q ss_pred             h--hCCEEEEe
Q 026023          235 R--EADVVCTL  243 (244)
Q Consensus       235 ~--~sD~Vvl~  243 (244)
                      +  +.|+|+++
T Consensus       104 ~d~dIDaVvia  114 (446)
T 3upl_A          104 SNPLIDVIIDA  114 (446)
T ss_dssp             TCTTCCEEEEC
T ss_pred             cCCCCCEEEEc
Confidence            8  48999875

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=95.08  E-value=0.022  Score=49.03  Aligned_cols=75  Identities=20%  Similarity=0.171  Sum_probs=47.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch--HHHHHHhhhhhhhhcCCCC--CccccccCCHHHHhh--h
Q 026023          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT--RLEKFVTAYGQFLKANGEQ--PVTWKRASSMDEVLR--E  236 (244)
Q Consensus       164 ~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ell~--~  236 (244)
                      ..++|.|.|. |.||+.+++.| ..-|.+|.+++|++..  ...+....+    ...+..  .......+++.++++  .
T Consensus         9 ~~~~IlVtGatG~iG~~l~~~L-~~~g~~V~~l~R~~~~~~~~~~~~~~l----~~~~v~~~~~Dl~d~~~l~~~~~~~~   83 (346)
T 3i6i_A            9 PKGRVLIAGATGFIGQFVATAS-LDAHRPTYILARPGPRSPSKAKIFKAL----EDKGAIIVYGLINEQEAMEKILKEHE   83 (346)
T ss_dssp             --CCEEEECTTSHHHHHHHHHH-HHTTCCEEEEECSSCCCHHHHHHHHHH----HHTTCEEEECCTTCHHHHHHHHHHTT
T ss_pred             CCCeEEEECCCcHHHHHHHHHH-HHCCCCEEEEECCCCCChhHHHHHHHH----HhCCcEEEEeecCCHHHHHHHHhhCC
Confidence            4678999997 99999999998 6889999999997622  111111100    011111  112223346788999  9


Q ss_pred             CCEEEEe
Q 026023          237 ADVVCTL  243 (244)
Q Consensus       237 sD~Vvl~  243 (244)
                      +|+|+.+
T Consensus        84 ~d~Vi~~   90 (346)
T 3i6i_A           84 IDIVVST   90 (346)
T ss_dssp             CCEEEEC
T ss_pred             CCEEEEC
Confidence            9998754

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=95.05  E-value=0.042  Score=43.65  Aligned_cols=34  Identities=21%  Similarity=0.273  Sum_probs=30.4

Q ss_pred             EEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          167 TVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       167 tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +|.|.| .|.||+.+++.| ..-|.+|.+++|++..
T Consensus         2 kvlVtGatG~iG~~l~~~L-~~~g~~V~~~~R~~~~   36 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEA-KNRGHEVTAIVRNAGK   36 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCSHH
T ss_pred             eEEEEcCCchhHHHHHHHH-HhCCCEEEEEEcCchh
Confidence            689999 599999999998 6889999999998754

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=95.05  E-value=0.022  Score=49.38  Aligned_cols=77  Identities=16%  Similarity=0.290  Sum_probs=49.7

Q ss_pred             cccCCCEEEEEc-CChHHHHHHHHHhccC-Cc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCC--CccccccCCHHHHhh
Q 026023          161 NLLKGQTVGVIG-AGRIGSAYARMMVEGF-KM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWKRASSMDEVLR  235 (244)
Q Consensus       161 ~~l~g~tvgIvG-~G~IG~~vA~~la~af-G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ell~  235 (244)
                      ..+.|++|.|.| .|.||+.+++.| ... |. +|.+++|++... ++....+    ......  ...+...+++.++++
T Consensus        17 ~~~~~k~vlVTGatG~iG~~l~~~L-~~~~g~~~V~~~~r~~~~~-~~~~~~~----~~~~v~~~~~Dl~d~~~l~~~~~   90 (344)
T 2gn4_A           17 NMLDNQTILITGGTGSFGKCFVRKV-LDTTNAKKIIVYSRDELKQ-SEMAMEF----NDPRMRFFIGDVRDLERLNYALE   90 (344)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHH-HHHCCCSEEEEEESCHHHH-HHHHHHH----CCTTEEEEECCTTCHHHHHHHTT
T ss_pred             HhhCCCEEEEECCCcHHHHHHHHHH-HhhCCCCEEEEEECChhhH-HHHHHHh----cCCCEEEEECCCCCHHHHHHHHh
Confidence            347899999999 599999999998 566 98 999999986432 1111111    000100  112222345778888


Q ss_pred             hCCEEEEe
Q 026023          236 EADVVCTL  243 (244)
Q Consensus       236 ~sD~Vvl~  243 (244)
                      ..|+|+.+
T Consensus        91 ~~D~Vih~   98 (344)
T 2gn4_A           91 GVDICIHA   98 (344)
T ss_dssp             TCSEEEEC
T ss_pred             cCCEEEEC
Confidence            99998754

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=95.04  E-value=0.038  Score=46.36  Aligned_cols=71  Identities=17%  Similarity=0.126  Sum_probs=47.4

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHhccCC-cEEEEEcCCcchHHHHHHhhhhhhhhcCCCC--CccccccCCHHHHhhhCCEE
Q 026023          165 GQTVGVIGA-GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       165 g~tvgIvG~-G~IG~~vA~~la~afG-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ell~~sD~V  240 (244)
                      +++|.|.|. |.||+.+++.| ..-| .+|.+.+|++.........       ..+..  .......+++.++++.+|+|
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L-~~~g~~~V~~~~R~~~~~~~~~l~-------~~~~~~~~~D~~d~~~l~~~~~~~d~v   76 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTL-LEDGTFKVRVVTRNPRKKAAKELR-------LQGAEVVQGDQDDQVIMELALNGAYAT   76 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHH-HHHCSSEEEEEESCTTSHHHHHHH-------HTTCEEEECCTTCHHHHHHHHTTCSEE
T ss_pred             CCEEEEECCCchHHHHHHHHH-HhcCCceEEEEEcCCCCHHHHHHH-------HCCCEEEEecCCCHHHHHHHHhcCCEE
Confidence            578999997 99999999998 5668 9999999986542111110       01111  11222234677889999999


Q ss_pred             EEe
Q 026023          241 CTL  243 (244)
Q Consensus       241 vl~  243 (244)
                      +.+
T Consensus        77 i~~   79 (299)
T 2wm3_A           77 FIV   79 (299)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            864

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=95.03  E-value=0.028  Score=46.84  Aligned_cols=40  Identities=20%  Similarity=0.269  Sum_probs=34.7

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .++.||++.|.|. |.||+++|+.| ..-|++|+..+|+..+
T Consensus        25 m~l~~k~vlITGas~gIG~~la~~l-~~~G~~V~~~~r~~~~   65 (271)
T 4iin_A           25 MQFTGKNVLITGASKGIGAEIAKTL-ASMGLKVWINYRSNAE   65 (271)
T ss_dssp             CCCSCCEEEETTCSSHHHHHHHHHH-HHTTCEEEEEESSCHH
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCCHH
Confidence            4689999999985 78999999999 6889999999996544

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=95.03  E-value=0.029  Score=48.62  Aligned_cols=37  Identities=19%  Similarity=0.213  Sum_probs=33.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcch
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~  201 (244)
                      .|++|.|+|.|.||...++.+ +.+|+ +|++.++++..
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a-~~~Ga~~Vi~~~~~~~~  204 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVA-KASGAYPVIVSEPSDFR  204 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHH-HHTTCCSEEEECSCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHH
Confidence            788999999999999999995 99999 99999998543

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=95.01  E-value=0.025  Score=50.81  Aligned_cols=37  Identities=24%  Similarity=0.328  Sum_probs=32.5

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCC
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~  198 (244)
                      .++.|++|.|.|+|++|+.+|++| ..+|++|++++.+
T Consensus       206 ~~l~gk~vaVqG~GnVG~~aa~~L-~e~GakVVavsD~  242 (421)
T 1v9l_A          206 GGIEGKTVAIQGMGNVGRWTAYWL-EKMGAKVIAVSDI  242 (421)
T ss_dssp             SCCTTCEEEEECCSHHHHHHHHHH-HTTTCEEEEEECS
T ss_pred             CCcCCCEEEEECcCHHHHHHHHHH-HHCCCEEEEEECC
Confidence            368999999999999999999998 8999999955444

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=95.00  E-value=0.047  Score=45.96  Aligned_cols=41  Identities=10%  Similarity=0.205  Sum_probs=35.3

Q ss_pred             ccccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          160 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       160 ~~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ...+.|+++.|.|. |.||+.+|+.| ..-|++|+..+|+...
T Consensus        21 ~~~l~~k~vlITGasggiG~~la~~L-~~~G~~V~~~~r~~~~   62 (302)
T 1w6u_A           21 PNSFQGKVAFITGGGTGLGKGMTTLL-SSLGAQCVIASRKMDV   62 (302)
T ss_dssp             TTTTTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             cccCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            34689999999985 79999999999 6889999999998643

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=94.98  E-value=0.041  Score=48.98  Aligned_cols=74  Identities=15%  Similarity=0.276  Sum_probs=48.2

Q ss_pred             CEEEEEcCChHHHHHHHHHhcc-------CCcEEEEEcCCcchH---HHHHHhhhhhhhhcCCCCC-------ccccccC
Q 026023          166 QTVGVIGAGRIGSAYARMMVEG-------FKMNLIYYDLYQATR---LEKFVTAYGQFLKANGEQP-------VTWKRAS  228 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~a-------fG~~V~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-------~~~~~~~  228 (244)
                      .+|+|+|.|.-|.++|..|++.       |+.+|..|.|.+...   ..+..+.     .+.+..+       .......
T Consensus        35 ~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~-----~~~N~~YLpgv~Lp~~i~~t~  109 (391)
T 4fgw_A           35 FKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINT-----RHQNVKYLPGITLPDNLVANP  109 (391)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTT-----TCCBTTTBTTCCCCSSEEEES
T ss_pred             CeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHh-----cCcCcccCCCCcCCCCcEEeC
Confidence            3899999999999999998532       456799998875421   1111110     0111111       1233456


Q ss_pred             CHHHHhhhCCEEEEeC
Q 026023          229 SMDEVLREADVVCTLC  244 (244)
Q Consensus       229 ~l~ell~~sD~Vvl~~  244 (244)
                      +|++.++.||+|++.+
T Consensus       110 dl~~al~~ad~ii~av  125 (391)
T 4fgw_A          110 DLIDSVKDVDIIVFNI  125 (391)
T ss_dssp             CHHHHHTTCSEEEECS
T ss_pred             CHHHHHhcCCEEEEEC
Confidence            8999999999999864

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=94.96  E-value=0.033  Score=47.98  Aligned_cols=39  Identities=15%  Similarity=0.180  Sum_probs=34.1

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      .++.+++|.|.|. |.||+.+++.| ..-|.+|++++|+..
T Consensus        23 ~~~~~~~vlVtGatG~iG~~l~~~L-~~~g~~V~~~~r~~~   62 (352)
T 1sb8_A           23 LPAQPKVWLITGVAGFIGSNLLETL-LKLDQKVVGLDNFAT   62 (352)
T ss_dssp             HHHSCCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECCSS
T ss_pred             cCccCCeEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCCc
Confidence            3477899999998 99999999998 678999999999764

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=94.94  E-value=0.02  Score=48.58  Aligned_cols=40  Identities=18%  Similarity=0.172  Sum_probs=36.6

Q ss_pred             ccccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       160 ~~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      ...+.|++|.|+|.|.+|.+.++.| ...|++|..+++...
T Consensus         8 ~~~l~~k~VLVVGgG~va~rka~~L-l~~Ga~VtViap~~~   47 (274)
T 1kyq_A            8 AHQLKDKRILLIGGGEVGLTRLYKL-MPTGCKLTLVSPDLH   47 (274)
T ss_dssp             EECCTTCEEEEEEESHHHHHHHHHH-GGGTCEEEEEEEEEC
T ss_pred             EEEcCCCEEEEECCcHHHHHHHHHH-HhCCCEEEEEcCCCC
Confidence            3568999999999999999999999 899999999998765

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=94.94  E-value=0.024  Score=51.15  Aligned_cols=78  Identities=19%  Similarity=0.245  Sum_probs=50.5

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCc---EEEEEc----CC--cchHHHHH--HhhhhhhhhcCCCCCccccccCC
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM---NLIYYD----LY--QATRLEKF--VTAYGQFLKANGEQPVTWKRASS  229 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~---~V~~~~----~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  229 (244)
                      ..+.++++.|+|.|..|+.+++.| ...|+   +|..+|    |+  .... ++.  ...+-..+....  .. .....+
T Consensus       182 ~~l~~~rvlvlGAGgAg~aia~~L-~~~G~~~~~I~vvd~~~~R~G~~~~a-~~~~~L~~~~~~~a~~~--~~-~~~~~~  256 (439)
T 2dvm_A          182 KKISEITLALFGAGAAGFATLRIL-TEAGVKPENVRVVELVNGKPRILTSD-LDLEKLFPYRGWLLKKT--NG-ENIEGG  256 (439)
T ss_dssp             CCTTTCCEEEECCSHHHHHHHHHH-HHTTCCGGGEEEEEEETTEEEECCTT-SCHHHHSTTCHHHHTTS--CT-TCCCSS
T ss_pred             CCccCCEEEEECccHHHHHHHHHH-HHcCCCcCeEEEEEccCCCcCccccc-cchhHHHHHHHHHhhcc--cc-cccccc
Confidence            357889999999999999999998 79998   799999    76  2221 110  110000000000  00 012357


Q ss_pred             HHHHhhhCCEEEEe
Q 026023          230 MDEVLREADVVCTL  243 (244)
Q Consensus       230 l~ell~~sD~Vvl~  243 (244)
                      |.+.++.+|+|+-+
T Consensus       257 L~e~l~~aDVlIna  270 (439)
T 2dvm_A          257 PQEALKDADVLISF  270 (439)
T ss_dssp             HHHHHTTCSEEEEC
T ss_pred             HHHHhccCCEEEEc
Confidence            99999999999864

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=94.94  E-value=0.054  Score=45.48  Aligned_cols=40  Identities=20%  Similarity=0.253  Sum_probs=34.0

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .++.||++.|.|. |.||+.+|+.| ..-|++|+..+|+..+
T Consensus        21 ~~l~~k~~lVTGas~GIG~~ia~~l-a~~G~~V~~~~r~~~~   61 (281)
T 3v2h_A           21 QSMMTKTAVITGSTSGIGLAIARTL-AKAGANIVLNGFGAPD   61 (281)
T ss_dssp             -CCTTCEEEEETCSSHHHHHHHHHH-HHTTCEEEEECCCCHH
T ss_pred             hccCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCChH
Confidence            4689999999985 78999999999 6899999999995543

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=94.93  E-value=0.032  Score=45.75  Aligned_cols=35  Identities=29%  Similarity=0.231  Sum_probs=30.6

Q ss_pred             cCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCC
Q 026023          163 LKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLY  198 (244)
Q Consensus       163 l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~  198 (244)
                      +.||++.|.| .|.||+.+|+.| ..-|++|+..+|+
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l-~~~G~~V~~~~r~   37 (246)
T 2uvd_A            2 LKGKVALVTGASRGIGRAIAIDL-AKQGANVVVNYAG   37 (246)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHH-HHTTCEEEEEESS
T ss_pred             CCCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCC
Confidence            5788998887 578999999999 6889999999983

>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A

Probab=94.93  E-value=0.043  Score=48.57  Aligned_cols=31  Identities=26%  Similarity=0.425  Sum_probs=25.5

Q ss_pred             EEEEEcCChHHHHHHHHHhccC---CcEEEEEcCC
Q 026023          167 TVGVIGAGRIGSAYARMMVEGF---KMNLIYYDLY  198 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~af---G~~V~~~~~~  198 (244)
                      +|||+|+|+||+.++|.| ..-   +++|.+++..
T Consensus         4 kVgInGfGrIGr~vlR~l-~~~~~~~veIVaInd~   37 (380)
T 2d2i_A            4 RVAINGFGRIGRNFLRCW-FGRQNTDLEVVAINNT   37 (380)
T ss_dssp             EEEEECCSHHHHHHHHHH-HHCSSCSEEEEEEECS
T ss_pred             EEEEECcCHHHHHHHHHH-hcCCCCCEEEEEEecC
Confidence            799999999999999997 443   5888877653

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=94.92  E-value=0.048  Score=47.06  Aligned_cols=37  Identities=19%  Similarity=0.403  Sum_probs=33.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .|++|.|+|.|.||..+++.+ +.+|++|+++++++..
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a-~~~Ga~Vi~~~~~~~~  200 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYA-KAMGLNVVAVDIGDEK  200 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHH-HHTTCEEEEECSCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEeCCHHH
Confidence            478999999999999999995 9999999999998654

>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}

Probab=94.90  E-value=0.17  Score=43.38  Aligned_cols=110  Identities=15%  Similarity=0.035  Sum_probs=65.9

Q ss_pred             HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccC-CCEEEEEcC-ChHHHHHHH
Q 026023          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLK-GQTVGVIGA-GRIGSAYAR  182 (244)
Q Consensus       105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~-g~tvgIvG~-G~IG~~vA~  182 (244)
                      ++-.+|+|.|..+.+..|+=-.+=.+.+.  +..                      ..+. |++|+++|= +++..+++.
T Consensus       109 A~~~~vPVINag~~~~HPtQaLaDl~Ti~--e~~----------------------g~l~~gl~va~vGD~~~va~Sl~~  164 (307)
T 3tpf_A          109 ARYSKAPVINALSELYHPTQVLGDLFTIK--EWN----------------------KMQNGIAKVAFIGDSNNMCNSWLI  164 (307)
T ss_dssp             HHHCSSCEEEEECSSCCHHHHHHHHHHHH--HTT----------------------CCGGGCCEEEEESCSSHHHHHHHH
T ss_pred             HHhCCCCEEeCCCCCcCcHHHHHHHHHHH--HHh----------------------CCCCCCCEEEEEcCCCccHHHHHH
Confidence            34458999998775544443222222222  110                      1377 999999995 578888899


Q ss_pred             HHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       183 ~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      .+ .-||++|....|..-...++..+...+.....+   ..+....+++|.++.+|+|..
T Consensus       165 ~~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g---~~~~~~~d~~eav~~aDvvyt  220 (307)
T 3tpf_A          165 TA-AILGFEISIAMPKNYKISPEIWEFAMKQALISG---AKISLGYDKFEALKDKDVVIT  220 (307)
T ss_dssp             HH-HHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHT---CEEEEESCHHHHHTTCSEEEE
T ss_pred             HH-HHcCCEEEEECCCccCCCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhcCCCEEEe
Confidence            97 789999999998643211221110000000111   123345799999999999965

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=94.90  E-value=0.073  Score=47.35  Aligned_cols=65  Identities=12%  Similarity=0.115  Sum_probs=49.3

Q ss_pred             ccCCCEEEEEcCC----------hHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHH
Q 026023          162 LLKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD  231 (244)
Q Consensus       162 ~l~g~tvgIvG~G----------~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  231 (244)
                      .+.|++|+|+|+-          .=...+++.| ...|++|.+|||..... .+               .++.....+++
T Consensus       306 ~~~~~~v~vlGlafK~~~~d~R~sp~~~i~~~L-~~~g~~v~~~DP~~~~~-~~---------------~~~~~~~~~~~  368 (402)
T 1dlj_A          306 ESPVKVVGVYRLIMKSNSDNFRESAIKDVIDIL-KSKDIKIIIYEPMLNKL-ES---------------EDQSVLVNDLE  368 (402)
T ss_dssp             CCSSCEEEEECCCSSTTCSCCTTCHHHHHHHHH-HTSSCEEEEECTTCSCC-CT---------------TCCSEECCCHH
T ss_pred             CCCCCEEEEEeeeccCCCcccccChHHHHHHHH-HHCCCEEEEECCCCChH-HH---------------HcCCeecCCHH
Confidence            4789999999974          3577899999 89999999999974331 00               11222346899


Q ss_pred             HHhhhCCEEEEe
Q 026023          232 EVLREADVVCTL  243 (244)
Q Consensus       232 ell~~sD~Vvl~  243 (244)
                      ++++.||+|+++
T Consensus       369 ~~~~~~d~~v~~  380 (402)
T 1dlj_A          369 NFKKQANIIVTN  380 (402)
T ss_dssp             HHHHHCSEEECS
T ss_pred             HHHhCCcEEEEe
Confidence            999999999985

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=94.90  E-value=0.043  Score=47.31  Aligned_cols=37  Identities=22%  Similarity=0.327  Sum_probs=33.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .|++|.|.|.|.||...++.+ +.+|++|++.++++..
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla-~~~Ga~Vi~~~~~~~~  202 (340)
T 3s2e_A          166 PGQWVVISGIGGLGHVAVQYA-RAMGLRVAAVDIDDAK  202 (340)
T ss_dssp             TTSEEEEECCSTTHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEeCCHHH
Confidence            578999999999999999995 9999999999988654

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=94.89  E-value=0.031  Score=46.44  Aligned_cols=40  Identities=25%  Similarity=0.145  Sum_probs=29.3

Q ss_pred             cccccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023          159 VGNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ  199 (244)
Q Consensus       159 ~~~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~  199 (244)
                      ....+.+|++.|.|. |.||+.+|+.| ..-|++|+...++.
T Consensus        20 ~~~~l~~k~vlVTGas~gIG~~la~~l-~~~G~~v~i~~~r~   60 (267)
T 4iiu_A           20 FQSNAMSRSVLVTGASKGIGRAIARQL-AADGFNIGVHYHRD   60 (267)
T ss_dssp             -----CCCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESSC
T ss_pred             hccccCCCEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCc
Confidence            345689999999986 78999999999 68999997655443

>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=94.89  E-value=0.079  Score=45.58  Aligned_cols=105  Identities=18%  Similarity=0.139  Sum_probs=66.5

Q ss_pred             HHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcC-ChHHHHHHH
Q 026023          104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYAR  182 (244)
Q Consensus       104 ~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~-G~IG~~vA~  182 (244)
                      .++-.+|+|.|..+.+.-|+=-.+=.+.+.  +..         |             .+.|.+|+++|= +++..+++.
T Consensus       117 lA~~~~vPVINag~~~~HPtQaLaDl~Ti~--e~~---------g-------------~l~glkva~vGD~~~va~Sl~~  172 (309)
T 4f2g_A          117 FAENSRVPVINGLTNEYHPCQVLADIFTYY--EHR---------G-------------PIRGKTVAWVGDANNMLYTWIQ  172 (309)
T ss_dssp             HHHTCSSCEEEEECSSCCHHHHHHHHHHHH--HHH---------S-------------CCTTCEEEEESCCCHHHHHHHH
T ss_pred             HHHhCCCCEEECCCCccCcHHHHHHHHHHH--HHh---------C-------------CCCCCEEEEECCCcchHHHHHH
Confidence            344568999999876655543332223322  111         1             378999999985 578888898


Q ss_pred             HHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       183 ~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      .+ .-||++|....|..-...++...      +   ....++....+++|.++.+|+|..
T Consensus       173 ~~-~~~G~~v~~~~P~~~~~~~~~~~------~---~~g~~v~~~~d~~eav~~aDvvyt  222 (309)
T 4f2g_A          173 AA-RILDFKLQLSTPPGYALDAKLVD------A---ESAPFYQVFDDPNEACKGADLVTT  222 (309)
T ss_dssp             HH-HHHTCEEEEECCGGGCCCGGGSC------G---GGGGGEEECSSHHHHTTTCSEEEE
T ss_pred             HH-HHcCCEEEEECCcccCCCHHHHH------H---HcCCeEEEEcCHHHHhcCCCEEEe
Confidence            97 78999999999854221111100      0   001223345799999999999975

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=94.88  E-value=0.027  Score=49.15  Aligned_cols=37  Identities=22%  Similarity=0.462  Sum_probs=32.8

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCC
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY  198 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~  198 (244)
                      ..|.+++|.|+|.|.+|..+|+.| -..|. ++..+|+.
T Consensus        30 ~kL~~~~VlIvGaGGlGs~va~~L-a~aGVg~ItlvD~D   67 (340)
T 3rui_A           30 DIIKNTKVLLLGAGTLGCYVSRAL-IAWGVRKITFVDNG   67 (340)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHH-HHTTCCEEEEECCC
T ss_pred             HHHhCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEecCC
Confidence            468999999999999999999999 58898 68888874

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=94.86  E-value=0.022  Score=47.96  Aligned_cols=40  Identities=13%  Similarity=0.133  Sum_probs=31.1

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .++.||++.|.|. |.||+.+|+.| ..-|++|+..+|+...
T Consensus        29 ~~l~gk~~lVTGas~GIG~aia~~l-a~~G~~V~~~~r~~~~   69 (281)
T 4dry_A           29 GSGEGRIALVTGGGTGVGRGIAQAL-SAEGYSVVITGRRPDV   69 (281)
T ss_dssp             -----CEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            4689999999985 67999999999 6889999999998653

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=94.86  E-value=0.073  Score=45.78  Aligned_cols=68  Identities=25%  Similarity=0.370  Sum_probs=45.3

Q ss_pred             EEEEEcC-ChHHHHHHHHHhccCC--cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccc---cCCHHHHhhhCCEE
Q 026023          167 TVGVIGA-GRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR---ASSMDEVLREADVV  240 (244)
Q Consensus       167 tvgIvG~-G~IG~~vA~~la~afG--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~ell~~sD~V  240 (244)
                      +|+|+|. |.+|+.++..| ..-|  -+|..+|..+.........       . .........   ..++++.++.||+|
T Consensus         2 KI~IiGa~G~VG~~la~~L-~~~~~~~ev~L~Di~~~~~~a~dL~-------~-~~~~~~l~~~~~t~d~~~a~~~aDvV   72 (314)
T 1mld_A            2 KVAVLGASGGIGQPLSLLL-KNSPLVSRLTLYDIAHTPGVAADLS-------H-IETRATVKGYLGPEQLPDCLKGCDVV   72 (314)
T ss_dssp             EEEEETTTSTTHHHHHHHH-HTCTTCSEEEEEESSSHHHHHHHHT-------T-SSSSCEEEEEESGGGHHHHHTTCSEE
T ss_pred             EEEEECCCChHHHHHHHHH-HhCCCCcEEEEEeCCccHHHHHHHh-------c-cCcCceEEEecCCCCHHHHhCCCCEE
Confidence            7999998 99999999998 4556  5899999976221111111       1 111111222   14688999999999


Q ss_pred             EEe
Q 026023          241 CTL  243 (244)
Q Consensus       241 vl~  243 (244)
                      +++
T Consensus        73 vi~   75 (314)
T 1mld_A           73 VIP   75 (314)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            986

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=94.85  E-value=0.023  Score=51.09  Aligned_cols=38  Identities=18%  Similarity=0.225  Sum_probs=34.4

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       163 l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +.+++|.|+|.|.+|.+.|+.| +..|.+|.++|.+..+
T Consensus         3 ~~~~~v~viG~G~~G~~~a~~l-~~~G~~v~~~D~~~~~   40 (439)
T 2x5o_A            3 YQGKNVVIIGLGLTGLSCVDFF-LARGVTPRVMDTRMTP   40 (439)
T ss_dssp             CTTCCEEEECCHHHHHHHHHHH-HTTTCCCEEEESSSSC
T ss_pred             CCCCEEEEEeecHHHHHHHHHH-HhCCCEEEEEECCCCc
Confidence            5788999999999999999998 8999999999987644

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=94.84  E-value=0.086  Score=46.08  Aligned_cols=37  Identities=27%  Similarity=0.310  Sum_probs=33.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcch
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~  201 (244)
                      .|++|.|+|.|.||...++.+ +.+|+ +|+++++++..
T Consensus       192 ~g~~VlV~GaG~vG~~a~qla-~~~Ga~~Vi~~~~~~~~  229 (374)
T 1cdo_A          192 PGSTCAVFGLGAVGLAAVMGC-HSAGAKRIIAVDLNPDK  229 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCGGG
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEEcCCHHH
Confidence            578999999999999999995 99999 89999988654

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=94.84  E-value=0.028  Score=49.22  Aligned_cols=31  Identities=23%  Similarity=0.543  Sum_probs=25.3

Q ss_pred             CEEEEEc-CChHHHHHHHHHhccC-CcEEEEEcC
Q 026023          166 QTVGVIG-AGRIGSAYARMMVEGF-KMNLIYYDL  197 (244)
Q Consensus       166 ~tvgIvG-~G~IG~~vA~~la~af-G~~V~~~~~  197 (244)
                      .+|||+| +|.||+++++.| ... +++|.++.+
T Consensus         9 ~kV~IiGAtG~iG~~llr~L-~~~p~~ev~~i~~   41 (354)
T 1ys4_A            9 IKVGVLGATGSVGQRFVQLL-ADHPMFELTALAA   41 (354)
T ss_dssp             EEEEEETTTSHHHHHHHHHH-TTCSSEEEEEEEE
T ss_pred             ceEEEECcCCHHHHHHHHHH-hcCCCCEEEEEEc
Confidence            4899999 999999999998 454 468877753

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=94.84  E-value=0.033  Score=46.11  Aligned_cols=40  Identities=28%  Similarity=0.205  Sum_probs=35.1

Q ss_pred             cccCCCEEEEEcCC---hHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          161 NLLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       161 ~~l~g~tvgIvG~G---~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .++.||++.|.|.+   .||+.+|+.| ..-|++|+..+++...
T Consensus        16 ~~l~~k~vlITGas~~~giG~~~a~~l-~~~G~~v~~~~~~~~~   58 (267)
T 3gdg_A           16 LSLKGKVVVVTGASGPKGMGIEAARGC-AEMGAAVAITYASRAQ   58 (267)
T ss_dssp             HCCTTCEEEETTCCSSSSHHHHHHHHH-HHTSCEEEECBSSSSS
T ss_pred             cCcCCCEEEEECCCCCCChHHHHHHHH-HHCCCeEEEEeCCcch
Confidence            46899999999975   8999999999 6889999999887654

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=94.83  E-value=0.059  Score=48.54  Aligned_cols=60  Identities=18%  Similarity=0.223  Sum_probs=48.6

Q ss_pred             ccCCCEEEEEcCC----------hHHHHHHHHHhccC-CcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCH
Q 026023          162 LLKGQTVGVIGAG----------RIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (244)
Q Consensus       162 ~l~g~tvgIvG~G----------~IG~~vA~~la~af-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (244)
                      .+.|++|+|+|+-          .-...+++.| ... |++|.+|||...+.                      ....++
T Consensus       312 ~~~~~~v~vlGlafK~~tdD~ReSpa~~i~~~L-~~~~g~~V~~~DP~~~~~----------------------~~~~~~  368 (431)
T 3ojo_A          312 ALSGNKVTVFGLTYKGDVDDIRESPAFDIYELL-NQEPDIEVCAYDPHVELD----------------------FVEHDM  368 (431)
T ss_dssp             HSSCCEEEEECCCSSTTSCCCTTCHHHHHHHHH-HHSTTCEEEEECSSCCCT----------------------TBCSTT
T ss_pred             hcCCCEEEEEeeeeCCCCcchhcChHHHHHHHH-HhhcCCEEEEECCCcccc----------------------cccCCH
Confidence            3689999999974          3478899998 788 99999999986541                      124688


Q ss_pred             HHHhhhCCEEEEeC
Q 026023          231 DEVLREADVVCTLC  244 (244)
Q Consensus       231 ~ell~~sD~Vvl~~  244 (244)
                      ++.++.+|.|+++.
T Consensus       369 ~~~~~~ad~vvi~t  382 (431)
T 3ojo_A          369 SHAVKDASLVLILS  382 (431)
T ss_dssp             HHHHTTCSEEEECS
T ss_pred             HHHHhCCCEEEEec
Confidence            99999999999863

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=94.83  E-value=0.035  Score=45.84  Aligned_cols=39  Identities=23%  Similarity=0.225  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ++.||++.|.|. |.||+++|+.| ..-|++|+..+|+...
T Consensus         4 ~~~~k~vlVTGas~GIG~aia~~l-~~~G~~V~~~~r~~~~   43 (252)
T 3h7a_A            4 TPRNATVAVIGAGDYIGAEIAKKF-AAEGFTVFAGRRNGEK   43 (252)
T ss_dssp             -CCSCEEEEECCSSHHHHHHHHHH-HHTTCEEEEEESSGGG
T ss_pred             CCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            478999999985 57999999999 6889999999998654

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=94.82  E-value=0.021  Score=48.86  Aligned_cols=78  Identities=15%  Similarity=0.133  Sum_probs=46.3

Q ss_pred             ccccCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhh--
Q 026023          160 GNLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--  236 (244)
Q Consensus       160 ~~~l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--  236 (244)
                      ...+.+++|.|.| .|.||+.+++.| ..-|.+|++++|+.....+.. ..+    .............+++.++++.  
T Consensus        16 ~~~~~~~~vlVTGatG~iG~~l~~~L-~~~g~~V~~~~r~~~~~~~~l-~~~----~~~~~~~~Dl~d~~~~~~~~~~~~   89 (333)
T 2q1w_A           16 PRGSHMKKVFITGICGQIGSHIAELL-LERGDKVVGIDNFATGRREHL-KDH----PNLTFVEGSIADHALVNQLIGDLQ   89 (333)
T ss_dssp             -----CCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECCSSCCGGGS-CCC----TTEEEEECCTTCHHHHHHHHHHHC
T ss_pred             eecCCCCEEEEeCCccHHHHHHHHHH-HHCCCEEEEEECCCccchhhH-hhc----CCceEEEEeCCCHHHHHHHHhccC
Confidence            3567899999998 699999999998 678999999999754311110 000    0000001112222356788888  


Q ss_pred             CCEEEEe
Q 026023          237 ADVVCTL  243 (244)
Q Consensus       237 sD~Vvl~  243 (244)
                      .|+|+.+
T Consensus        90 ~D~vih~   96 (333)
T 2q1w_A           90 PDAVVHT   96 (333)
T ss_dssp             CSEEEEC
T ss_pred             CcEEEEC
Confidence            9998754

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=94.81  E-value=0.045  Score=44.90  Aligned_cols=40  Identities=25%  Similarity=0.219  Sum_probs=34.4

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ..+.|+++.|.|. |.||+.+++.| ..-|++|+..+|+...
T Consensus         9 ~~l~~k~vlItGasggiG~~la~~l-~~~G~~V~~~~r~~~~   49 (260)
T 3awd_A            9 LRLDNRVAIVTGGAQNIGLACVTAL-AEAGARVIIADLDEAM   49 (260)
T ss_dssp             GCCTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            3578999999975 89999999999 6789999999998643

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=94.80  E-value=0.027  Score=46.02  Aligned_cols=39  Identities=23%  Similarity=0.161  Sum_probs=33.8

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ++.||++.|.|. |.||+.+|+.| ..-|++|+..+|+...
T Consensus         2 ~l~~k~vlITGas~gIG~~~a~~l-~~~G~~v~~~~r~~~~   41 (247)
T 3lyl_A            2 SLNEKVALVTGASRGIGFEVAHAL-ASKGATVVGTATSQAS   41 (247)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHH-HHTTCEEEEEESSHHH
T ss_pred             CCCCCEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            478899999985 78999999999 6889999999998654

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=94.80  E-value=0.09  Score=45.93  Aligned_cols=37  Identities=22%  Similarity=0.311  Sum_probs=33.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcch
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~  201 (244)
                      .|++|.|+|.|.||...++.+ +.+|+ +|++.++++..
T Consensus       191 ~g~~VlV~GaG~vG~~a~qla-~~~Ga~~Vi~~~~~~~~  228 (374)
T 2jhf_A          191 QGSTCAVFGLGGVGLSVIMGC-KAAGAARIIGVDINKDK  228 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCGGG
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcCCHHH
Confidence            578999999999999999995 99999 89999988654

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=94.79  E-value=0.051  Score=47.60  Aligned_cols=37  Identities=22%  Similarity=0.293  Sum_probs=33.1

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcch
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~  201 (244)
                      .|++|.|+|.|.+|...++.+ +.+|+ +|++.++++..
T Consensus       182 ~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~~~~~  219 (370)
T 4ej6_A          182 AGSTVAILGGGVIGLLTVQLA-RLAGATTVILSTRQATK  219 (370)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHH
Confidence            578999999999999999995 99999 89999988654

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=94.79  E-value=0.034  Score=46.50  Aligned_cols=40  Identities=30%  Similarity=0.332  Sum_probs=34.8

Q ss_pred             cccCCCEEEEEcCC-hHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          161 NLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       161 ~~l~g~tvgIvG~G-~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .+|+||++.|-|.+ -||+++|+.| ..-|++|..++++...
T Consensus         3 ~sL~gKvalVTGas~GIG~aiA~~l-a~~Ga~Vv~~~~~~~~   43 (254)
T 4fn4_A            3 QSLKNKVVIVTGAGSGIGRAIAKKF-ALNDSIVVAVELLEDR   43 (254)
T ss_dssp             GGGTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHH-HHcCCEEEEEECCHHH
Confidence            36999999999875 5999999999 5899999999998643

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=94.78  E-value=0.055  Score=47.52  Aligned_cols=73  Identities=11%  Similarity=0.236  Sum_probs=42.4

Q ss_pred             CCEEEEEc-CChHHHHHHHHHhccCC-cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          165 GQTVGVIG-AGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       165 g~tvgIvG-~G~IG~~vA~~la~afG-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      ..+|+|+| +|.||+++.+.| .... +++.++....... .++...++.+.... ...+..   .+ ++.+..+|+|++
T Consensus        16 ~~kV~IiGAtG~iG~~llr~L-~~~p~~elvai~~~~~~g-~~~~~~~~~~~~~v-~~dl~~---~~-~~~~~~vDvVf~   88 (359)
T 1xyg_A           16 DIRIGLLGASGYTGAEIVRLL-ANHPHFQVTLMTADRKAG-QSMESVFPHLRAQK-LPTLVS---VK-DADFSTVDAVFC   88 (359)
T ss_dssp             CEEEEEECCSSHHHHHHHHHH-HTCSSEEEEEEBCSTTTT-SCHHHHCGGGTTSC-CCCCBC---GG-GCCGGGCSEEEE
T ss_pred             CcEEEEECcCCHHHHHHHHHH-HcCCCcEEEEEeCchhcC-CCHHHhCchhcCcc-ccccee---cc-hhHhcCCCEEEE
Confidence            45899999 999999999998 4554 5888886643221 22222222111000 011111   12 456678999998


Q ss_pred             eC
Q 026023          243 LC  244 (244)
Q Consensus       243 ~~  244 (244)
                      ++
T Consensus        89 at   90 (359)
T 1xyg_A           89 CL   90 (359)
T ss_dssp             CC
T ss_pred             cC
Confidence            64

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=94.77  E-value=0.024  Score=46.93  Aligned_cols=38  Identities=18%  Similarity=0.098  Sum_probs=32.8

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ  199 (244)
Q Consensus       161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~  199 (244)
                      ..+.|+++.|.|. |.||+.+++.| ..-|++|+..+|+.
T Consensus        17 ~~~~~k~vlItGasggiG~~la~~l-~~~G~~v~~~~r~~   55 (274)
T 1ja9_A           17 KPLAGKVALTTGAGRGIGRGIAIEL-GRRGASVVVNYGSS   55 (274)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESSC
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEcCCc
Confidence            3588999999975 79999999999 68899999999843

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=94.77  E-value=0.018  Score=49.94  Aligned_cols=73  Identities=15%  Similarity=0.207  Sum_probs=46.9

Q ss_pred             cccCCCEEEEEc-CChHHHHHHHHHhccC-CcEEEEEcCCcchHHHHHHhhhhhhhhcCCCC--Ccccc-ccCCHHHHhh
Q 026023          161 NLLKGQTVGVIG-AGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWK-RASSMDEVLR  235 (244)
Q Consensus       161 ~~l~g~tvgIvG-~G~IG~~vA~~la~af-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~l~ell~  235 (244)
                      ..+.+++|.|.| .|.||+.+++.| ..- |.+|.+++|+.... +...       ...+..  ..... ....+.++++
T Consensus        20 ~~m~~~~vlVtGatG~iG~~l~~~L-~~~~g~~V~~~~r~~~~~-~~~~-------~~~~v~~~~~Dl~~d~~~~~~~~~   90 (372)
T 3slg_A           20 GSMKAKKVLILGVNGFIGHHLSKRI-LETTDWEVFGMDMQTDRL-GDLV-------KHERMHFFEGDITINKEWVEYHVK   90 (372)
T ss_dssp             ---CCCEEEEESCSSHHHHHHHHHH-HHHSSCEEEEEESCCTTT-GGGG-------GSTTEEEEECCTTTCHHHHHHHHH
T ss_pred             cccCCCEEEEECCCChHHHHHHHHH-HhCCCCEEEEEeCChhhh-hhhc-------cCCCeEEEeCccCCCHHHHHHHhc
Confidence            457789999999 699999999998 565 89999999986542 1100       000000  01111 2235778889


Q ss_pred             hCCEEEE
Q 026023          236 EADVVCT  242 (244)
Q Consensus       236 ~sD~Vvl  242 (244)
                      .+|+|+-
T Consensus        91 ~~d~Vih   97 (372)
T 3slg_A           91 KCDVILP   97 (372)
T ss_dssp             HCSEEEE
T ss_pred             cCCEEEE
Confidence            9999875

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=94.77  E-value=0.039  Score=44.09  Aligned_cols=34  Identities=24%  Similarity=0.242  Sum_probs=30.3

Q ss_pred             EEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          167 TVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       167 tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +|.|.|. |.||+.+++.| ..-|.+|.+++|++..
T Consensus         2 kilVtGatG~iG~~l~~~L-~~~g~~V~~~~R~~~~   36 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEA-RRRGHEVLAVVRDPQK   36 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             EEEEEcCCCHHHHHHHHHH-HHCCCEEEEEEecccc
Confidence            6889987 99999999998 6789999999998754

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=94.74  E-value=0.011  Score=50.09  Aligned_cols=70  Identities=23%  Similarity=0.249  Sum_probs=43.5

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhccCCcEEE-EEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC  241 (244)
Q Consensus       166 ~tvgIvG~-G~IG~~vA~~la~afG~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv  241 (244)
                      .+|+|+|+ |++|+.+++.+...=|+++. ++++.+......   ..+..   .+....++...+++++++..+|+|+
T Consensus         6 mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~---d~~~~---~g~~~~~v~~~~dl~~~l~~~DvVI   77 (273)
T 1dih_A            6 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGS---DAGEL---AGAGKTGVTVQSSLDAVKDDFDVFI   77 (273)
T ss_dssp             EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSC---CTTCS---SSSSCCSCCEESCSTTTTTSCSEEE
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhh---hHHHH---cCCCcCCceecCCHHHHhcCCCEEE
Confidence            48999998 99999999976456688877 666654220000   00000   0111122333467889999999998

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=94.74  E-value=0.047  Score=45.14  Aligned_cols=39  Identities=15%  Similarity=0.148  Sum_probs=33.8

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ++.||++.|.|. |.||+.+|+.| ..-|++|+..+|+...
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~   43 (263)
T 3ai3_A            4 GISGKVAVITGSSSGIGLAIAEGF-AKEGAHIVLVARQVDR   43 (263)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEcCCHHH
Confidence            478999999985 88999999999 6789999999998643

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=94.73  E-value=0.053  Score=44.88  Aligned_cols=40  Identities=25%  Similarity=0.166  Sum_probs=32.4

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .++.||++.|.|. |.||+.+|+.| ..-|++|+..+++..+
T Consensus         4 ~~l~~k~vlVTGas~GIG~aia~~l-a~~G~~V~~~~~~~~~   44 (259)
T 3edm_A            4 QRFTNRTIVVAGAGRDIGRACAIRF-AQEGANVVLTYNGAAE   44 (259)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECSSCH
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEcCCCHH
Confidence            3588999999986 57999999999 5889999988444433

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=94.73  E-value=0.039  Score=46.15  Aligned_cols=40  Identities=20%  Similarity=0.145  Sum_probs=35.0

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .++.||++.|.|. |.||+.+|+.| ..-|++|+..+|+...
T Consensus        22 ~~l~gk~~lVTGas~gIG~aia~~l-a~~G~~V~~~~r~~~~   62 (271)
T 4ibo_A           22 FDLGGRTALVTGSSRGLGRAMAEGL-AVAGARILINGTDPSR   62 (271)
T ss_dssp             GCCTTCEEEETTCSSHHHHHHHHHH-HHTTCEEEECCSCHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            4689999999986 68999999999 6889999999998643

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=94.73  E-value=0.026  Score=49.09  Aligned_cols=59  Identities=19%  Similarity=0.197  Sum_probs=38.7

Q ss_pred             EEEEEcCChHHHHHHHHHhccC---------CcEEEEE-cCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhh
Q 026023          167 TVGVIGAGRIGSAYARMMVEGF---------KMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~af---------G~~V~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  236 (244)
                      +|||+|+|.||+.+++.+ +..         +++|.++ +++... ..             +. .. ...++++++++ +
T Consensus         5 rvgIiG~G~VG~~~~~~l-~~~~~~l~~~g~~~~lvaV~d~~~~~-~~-------------~~-~~-~~~~~d~~~ll-~   66 (332)
T 2ejw_A            5 KIALLGGGTVGSAFYNLV-LERAEELSAFGVVPRFLGVLVRDPRK-PR-------------AI-PQ-ELLRAEPFDLL-E   66 (332)
T ss_dssp             EEEEECCSHHHHHHHHHH-HHTGGGGGGGTEEEEEEEEECSCTTS-CC-------------SS-CG-GGEESSCCCCT-T
T ss_pred             EEEEEcCCHHHHHHHHHH-HhChhhHhhcCCCEEEEEEEECCHHH-hh-------------cc-Cc-ccccCCHHHHh-C
Confidence            799999999999999987 454         5676554 444321 00             00 11 11245788888 9


Q ss_pred             CCEEEEe
Q 026023          237 ADVVCTL  243 (244)
Q Consensus       237 sD~Vvl~  243 (244)
                      .|+|+.+
T Consensus        67 iDvVve~   73 (332)
T 2ejw_A           67 ADLVVEA   73 (332)
T ss_dssp             CSEEEEC
T ss_pred             CCEEEEC
Confidence            9999876

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=94.72  E-value=0.062  Score=47.13  Aligned_cols=31  Identities=26%  Similarity=0.361  Sum_probs=26.3

Q ss_pred             CEEEEEcCChHHHHHHHHHhccC-CcEEEEEcC
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDL  197 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~af-G~~V~~~~~  197 (244)
                      .+|||+|+|+||+++.|.| ..- +++|.+.+.
T Consensus        18 ikVgI~G~G~iGr~llR~l-~~~p~veivaind   49 (354)
T 3cps_A           18 GTLGINGFGRIGRLVLRAC-MERNDITVVAIND   49 (354)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HTCSSCEEEEEEC
T ss_pred             eEEEEECCCHHHHHHHHHH-HcCCCeEEEEecC
Confidence            3899999999999999997 454 788888874

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=94.72  E-value=0.053  Score=44.85  Aligned_cols=38  Identities=24%  Similarity=0.324  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEcC-Ch--HHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          162 LLKGQTVGVIGA-GR--IGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~--IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      ++.||++.|.|. |.  ||+.+|+.| ..-|++|+..+|+.+
T Consensus         4 ~l~~k~vlVTGasg~~GIG~~ia~~l-~~~G~~V~~~~r~~~   44 (266)
T 3oig_A            4 SLEGRNIVVMGVANKRSIAWGIARSL-HEAGARLIFTYAGER   44 (266)
T ss_dssp             CCTTCEEEEECCCSTTSHHHHHHHHH-HHTTCEEEEEESSGG
T ss_pred             ccCCCEEEEEcCCCCCcHHHHHHHHH-HHCCCEEEEecCchH
Confidence            588999999997 45  999999999 688999999998854

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=94.72  E-value=0.058  Score=49.24  Aligned_cols=63  Identities=22%  Similarity=0.400  Sum_probs=49.2

Q ss_pred             ccCCCEEEEEcCC----------hHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHH
Q 026023          162 LLKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD  231 (244)
Q Consensus       162 ~l~g~tvgIvG~G----------~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  231 (244)
                      .+.|++|+|+|+-          .=...+++.| ...|++|.+|||....        +         ..+  ....+++
T Consensus       350 ~~~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L-~~~g~~V~~~DP~~~~--------~---------~~~--~~~~~~~  409 (478)
T 3g79_A          350 KMDGSKVAMLGWAFIKDSDDARNTPSEPYRDLC-LKAGASVMVHDPYVVN--------Y---------PGV--EISDNLE  409 (478)
T ss_dssp             CSTTCEEEEECSSSSTTCSCCTTCTHHHHHHHH-HHHTCEEEEECSSCCC--------B---------TTB--CEESCHH
T ss_pred             CCCCCEEEEEeeecCCCCcchhcCcHHHHHHHH-HHCCCEEEEECCCccc--------c---------cCc--ceecCHH
Confidence            5789999999974          3368899998 8999999999998642        0         011  1246899


Q ss_pred             HHhhhCCEEEEeC
Q 026023          232 EVLREADVVCTLC  244 (244)
Q Consensus       232 ell~~sD~Vvl~~  244 (244)
                      +.++.+|.|++.+
T Consensus       410 ~~~~~ad~vvi~t  422 (478)
T 3g79_A          410 EVVRNADAIVVLA  422 (478)
T ss_dssp             HHHTTCSEEEECS
T ss_pred             HHHhcCCEEEEec
Confidence            9999999999863

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=94.71  E-value=0.051  Score=45.96  Aligned_cols=39  Identities=21%  Similarity=0.223  Sum_probs=34.0

Q ss_pred             cccCCCEEEEEcCC-h--HHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          161 NLLKGQTVGVIGAG-R--IGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       161 ~~l~g~tvgIvG~G-~--IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      ..+.||++.|.|.+ .  ||+.+|+.| ..-|++|+..+|+..
T Consensus        27 ~~l~gk~~lVTGasg~~GIG~aia~~l-a~~G~~V~~~~r~~~   68 (293)
T 3grk_A           27 GLLQGKRGLILGVANNRSIAWGIAKAA-REAGAELAFTYQGDA   68 (293)
T ss_dssp             CTTTTCEEEEECCCSSSSHHHHHHHHH-HHTTCEEEEEECSHH
T ss_pred             ccCCCCEEEEEcCCCCCcHHHHHHHHH-HHCCCEEEEEcCCHH
Confidence            46899999999984 4  999999999 688999999999853

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=94.70  E-value=0.097  Score=45.77  Aligned_cols=37  Identities=22%  Similarity=0.221  Sum_probs=33.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcch
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~  201 (244)
                      .|++|.|+|.|.||...++.+ +.+|+ +|++.++++..
T Consensus       195 ~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~~~~~  232 (376)
T 1e3i_A          195 PGSTCAVFGLGCVGLSAIIGC-KIAGASRIIAIDINGEK  232 (376)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCGGG
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcCCHHH
Confidence            578999999999999999995 99999 89999988654

>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O*

Probab=94.70  E-value=0.058  Score=47.02  Aligned_cols=30  Identities=27%  Similarity=0.514  Sum_probs=24.4

Q ss_pred             EEEEEcCChHHHHHHHHHhccC---CcEEEEEcC
Q 026023          167 TVGVIGAGRIGSAYARMMVEGF---KMNLIYYDL  197 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~af---G~~V~~~~~  197 (244)
                      +|||+|+|+||+++.|.| ..-   .++|.+.+.
T Consensus         3 kVgInG~G~IGr~llR~l-~~~~~p~~eivaInd   35 (337)
T 1rm4_O            3 KVAINGFGRIGRNFLRCW-HGRKDSPLDVVVIND   35 (337)
T ss_dssp             EEEEECCSHHHHHHHHHH-HTCSSCSEEEEEEEC
T ss_pred             EEEEECCCHHHHHHHHHH-HhCCCCCeEEEEEEc
Confidence            799999999999999997 443   568777664

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=94.70  E-value=0.033  Score=46.45  Aligned_cols=41  Identities=20%  Similarity=0.208  Sum_probs=34.2

Q ss_pred             ccccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          160 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       160 ~~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ...+.||++.|.|. |.||+.+|+.| ..-|++|+..+++..+
T Consensus        13 ~~~l~~k~~lVTGas~gIG~aia~~l-~~~G~~V~~~~~~~~~   54 (270)
T 3is3_A           13 PGRLDGKVALVTGSGRGIGAAVAVHL-GRLGAKVVVNYANSTK   54 (270)
T ss_dssp             TTCCTTCEEEESCTTSHHHHHHHHHH-HHTTCEEEEEESSCHH
T ss_pred             CCCcCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEcCCCHH
Confidence            35689999999986 57999999999 6889999997766544

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=94.70  E-value=0.037  Score=45.85  Aligned_cols=37  Identities=22%  Similarity=0.214  Sum_probs=33.1

Q ss_pred             ccCCCEEEEEcC---ChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQ  199 (244)
Q Consensus       162 ~l~g~tvgIvG~---G~IG~~vA~~la~afG~~V~~~~~~~  199 (244)
                      .+.||++.|.|.   |.||+.+|+.| ..-|++|+..+|+.
T Consensus         6 ~l~~k~vlVTGas~~~gIG~~ia~~l-~~~G~~V~~~~r~~   45 (265)
T 1qsg_A            6 FLSGKRILVTGVASKLSIAYGIAQAM-HREGAELAFTYQND   45 (265)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHH-HHTTCEEEEEESST
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHH-HHCCCEEEEEcCcH
Confidence            378999999997   68999999999 68899999999876

>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}

Probab=94.69  E-value=0.15  Score=44.18  Aligned_cols=119  Identities=13%  Similarity=0.108  Sum_probs=68.8

Q ss_pred             HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCC--hHHHHHHH
Q 026023          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG--RIGSAYAR  182 (244)
Q Consensus       105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G--~IG~~vA~  182 (244)
                      ++-.+|+|.|....+..|+=-.+=.+.+  .+....      .+    .     ....+.|.+|+++|=|  ++..+++.
T Consensus       118 A~~~~vPVINag~~~~HPtQaLaDl~Ti--~e~~g~------~~----~-----~~~~l~gl~va~vGD~~~~va~Sl~~  180 (328)
T 3grf_A          118 AQHASVPCINALDDFGHPLQMVCDFMTI--KEKFTA------AG----E-----FSNGFKGIKFAYCGDSMNNVTYDLMR  180 (328)
T ss_dssp             HHHCSSCEEESSCSSCCHHHHHHHHHHH--HHHHHH------TT----C-----CTTTGGGCCEEEESCCSSHHHHHHHH
T ss_pred             HHhCCCCEEeCCCCCCCcHHHHHHHHHH--HHHhCC------cc----c-----cccccCCcEEEEeCCCCcchHHHHHH
Confidence            3445899999877654444322222222  222100      00    0     1135899999999986  88999999


Q ss_pred             HHhccCCcEEEEEcCCcch--HHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          183 MMVEGFKMNLIYYDLYQAT--RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       183 ~la~afG~~V~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      .+ .-||++|....|..-.  ..++..+...+.....+ ....+....+++|.++.+|+|..
T Consensus       181 ~~-~~~G~~v~~~~P~~~~~~p~~~~~~~~~~~~~~~~-~g~~v~~~~d~~eav~~aDvvyt  240 (328)
T 3grf_A          181 GC-ALLGMECHVCCPDHKDFKPIKEVIDECEEIIAKHG-TGGSIKIFHDCKKGCEGVDVVYT  240 (328)
T ss_dssp             HH-HHHTCEEEEECCSSGGGSCCHHHHHHHHHHHHHHT-CCCEEEEESSHHHHHTTCSEEEE
T ss_pred             HH-HHcCCEEEEECChHhhhCCCHHHHHHHHHHHhhcc-CCCeEEEEcCHHHHhcCCCEEEe
Confidence            97 7899999999986432  11222111000000000 01223345799999999999974

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=94.69  E-value=0.062  Score=45.33  Aligned_cols=63  Identities=19%  Similarity=0.303  Sum_probs=39.1

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhh--CCEEE
Q 026023          165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVVC  241 (244)
Q Consensus       165 g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--sD~Vv  241 (244)
                      +++|.|.|. |.||+.+++.| ..-|.+|.+.+|+....  ...             ........++.++++.  .|+|+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L-~~~g~~V~~~~r~~~~~--~~~-------------~~Dl~d~~~~~~~~~~~~~d~vi   65 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEF-QQNNWHAVGCGFRRARP--KFE-------------QVNLLDSNAVHHIIHDFQPHVIV   65 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHH-HTTTCEEEEEC---------------------------------CHHHHHHHCCSEEE
T ss_pred             CCeEEEECCCcHHHHHHHHHH-HhCCCeEEEEccCCCCC--CeE-------------EecCCCHHHHHHHHHhhCCCEEE
Confidence            578999997 99999999998 68899999999865330  010             1112233567788876  89887


Q ss_pred             Ee
Q 026023          242 TL  243 (244)
Q Consensus       242 l~  243 (244)
                      .+
T Consensus        66 h~   67 (315)
T 2ydy_A           66 HC   67 (315)
T ss_dssp             EC
T ss_pred             EC
Confidence            54

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=94.68  E-value=0.056  Score=45.90  Aligned_cols=59  Identities=29%  Similarity=0.297  Sum_probs=40.5

Q ss_pred             CEEEEEcCChHHHHHHHHHhcc----CCcEEEE-EcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--hCC
Q 026023          166 QTVGVIGAGRIGSAYARMMVEG----FKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EAD  238 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~a----fG~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sD  238 (244)
                      .+|||||+|.||+..++.+ ..    -++++.+ ++++...  +                ..+.. ..+++++++  +.|
T Consensus         8 ~rvgiIG~G~iG~~~~~~l-~~~~~~~~~~lvav~d~~~~a--~----------------~~g~~-~~~~~ell~~~~vD   67 (294)
T 1lc0_A            8 FGVVVVGVGRAGSVRLRDL-KDPRSAAFLNLIGFVSRRELG--S----------------LDEVR-QISLEDALRSQEID   67 (294)
T ss_dssp             EEEEEECCSHHHHHHHHHH-TSHHHHTTEEEEEEECSSCCC--E----------------ETTEE-BCCHHHHHHCSSEE
T ss_pred             ceEEEEEEcHHHHHHHHHH-hccccCCCEEEEEEECchHHH--H----------------HcCCC-CCCHHHHhcCCCCC
Confidence            4899999999999999887 44    3677664 4543211  0                01111 368999998  679


Q ss_pred             EEEEeC
Q 026023          239 VVCTLC  244 (244)
Q Consensus       239 ~Vvl~~  244 (244)
                      +|+++.
T Consensus        68 ~V~i~t   73 (294)
T 1lc0_A           68 VAYICS   73 (294)
T ss_dssp             EEEECS
T ss_pred             EEEEeC
Confidence            998863

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=94.67  E-value=0.034  Score=45.98  Aligned_cols=39  Identities=13%  Similarity=0.159  Sum_probs=34.1

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .+.||++.|.|. |.||+.+|+.| ..-|++|+.++|+...
T Consensus         3 ~l~~k~vlVTGas~gIG~aia~~l-~~~G~~V~~~~r~~~~   42 (257)
T 3imf_A            3 AMKEKVVIITGGSSGMGKGMATRF-AKEGARVVITGRTKEK   42 (257)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            478999999986 78999999999 6889999999998654

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=94.65  E-value=0.034  Score=47.02  Aligned_cols=67  Identities=13%  Similarity=0.176  Sum_probs=45.3

Q ss_pred             CCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          165 GQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       165 g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      +++|.|.| .|.||+.+++.| ..-|.+|.+.+|++... +  ...       ......... .+++.++++.+|+|+.+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L-~~~g~~V~~~~r~~~~~-~--~~~-------~~~~~~Dl~-~~~~~~~~~~~d~Vih~   69 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESI-KNDGNTPIILTRSIGNK-A--IND-------YEYRVSDYT-LEDLINQLNDVDAVVHL   69 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCCC--------C-------CEEEECCCC-HHHHHHHTTTCSEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHH-HhCCCEEEEEeCCCCcc-c--CCc-------eEEEEcccc-HHHHHHhhcCCCEEEEc
Confidence            36899999 699999999998 78899999999983321 1  100       000011222 34678889999998754

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=94.64  E-value=0.047  Score=45.87  Aligned_cols=74  Identities=20%  Similarity=0.252  Sum_probs=47.2

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcchH----HHHHHhhhhhhhhcCCCC--CccccccCCHHHHhhhC
Q 026023          165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATR----LEKFVTAYGQFLKANGEQ--PVTWKRASSMDEVLREA  237 (244)
Q Consensus       165 g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ell~~s  237 (244)
                      .++|.|.|. |.||+.+++.| ..-|.+|.+.+|+....    ..+....    +...+..  .......+++.++++.+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L-~~~g~~V~~l~R~~~~~~~~~~~~~~~~----l~~~~v~~v~~D~~d~~~l~~~~~~~   78 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKAS-LDLGHPTFLLVRESTASSNSEKAQLLES----FKASGANIVHGSIDDHASLVEAVKNV   78 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHH-HHTTCCEEEECCCCCTTTTHHHHHHHHH----HHTTTCEEECCCTTCHHHHHHHHHTC
T ss_pred             CCEEEEEcCCcHHHHHHHHHH-HhCCCCEEEEECCcccccCHHHHHHHHH----HHhCCCEEEEeccCCHHHHHHHHcCC
Confidence            468999996 99999999998 67899999999985321    1110100    0111111  11222234678889999


Q ss_pred             CEEEEe
Q 026023          238 DVVCTL  243 (244)
Q Consensus       238 D~Vvl~  243 (244)
                      |+|+.+
T Consensus        79 d~vi~~   84 (308)
T 1qyc_A           79 DVVIST   84 (308)
T ss_dssp             SEEEEC
T ss_pred             CEEEEC
Confidence            998764

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=94.63  E-value=0.067  Score=43.91  Aligned_cols=39  Identities=31%  Similarity=0.302  Sum_probs=34.5

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ++.||++.|.|. |.||+.+|+.| ..-|++|+..+|+...
T Consensus         3 ~l~gk~vlVTGas~gIG~a~a~~l-~~~G~~V~~~~r~~~~   42 (247)
T 3rwb_A            3 RLAGKTALVTGAAQGIGKAIAARL-AADGATVIVSDINAEG   42 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEECSCHHH
T ss_pred             CcCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            588999999986 67999999999 6889999999998654

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=94.63  E-value=0.074  Score=47.12  Aligned_cols=38  Identities=21%  Similarity=0.335  Sum_probs=33.8

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcch
Q 026023          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (244)
Q Consensus       163 l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~  201 (244)
                      -.|.+|.|+|.|.||...++.+ +.+|+ +|+++++++..
T Consensus       212 ~~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~~~~~  250 (404)
T 3ip1_A          212 RPGDNVVILGGGPIGLAAVAIL-KHAGASKVILSEPSEVR  250 (404)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHH
Confidence            3688999999999999999995 99999 99999988644

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=94.63  E-value=0.034  Score=46.54  Aligned_cols=40  Identities=28%  Similarity=0.319  Sum_probs=34.7

Q ss_pred             cccCCCEEEEEcCC-hHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          161 NLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       161 ~~l~g~tvgIvG~G-~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .+|.||++.|-|.+ .||+++|++| ..-|++|...+++...
T Consensus         5 f~L~gKvalVTGas~GIG~aia~~l-a~~Ga~Vvi~~~~~~~   45 (255)
T 4g81_D            5 FDLTGKTALVTGSARGLGFAYAEGL-AAAGARVILNDIRATL   45 (255)
T ss_dssp             TCCTTCEEEETTCSSHHHHHHHHHH-HHTTCEEEECCSCHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            46999999998765 5999999999 6999999999998643

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=94.62  E-value=0.052  Score=46.13  Aligned_cols=79  Identities=16%  Similarity=0.125  Sum_probs=50.0

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCC---CccccccCCHHHHhhhC
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ---PVTWKRASSMDEVLREA  237 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~ell~~s  237 (244)
                      .+.|++|.|.|. |.||+.+++.| ..-|.+|++++|+.... +...+.+..... ....   ........+++++++..
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L-~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~~~   84 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQL-LEHGYKVRGTARSASKL-ANLQKRWDAKYP-GRFETAVVEDMLKQGAYDEVIKGA   84 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSHHHH-HHHHHHHHHHST-TTEEEEECSCTTSTTTTTTTTTTC
T ss_pred             CCCCCEEEEECCccHHHHHHHHHH-HHCCCEEEEEeCCcccH-HHHHHHhhccCC-CceEEEEecCCcChHHHHHHHcCC
Confidence            468899999997 99999999998 67899999999976431 111111000000 0000   11223345677888889


Q ss_pred             CEEEEe
Q 026023          238 DVVCTL  243 (244)
Q Consensus       238 D~Vvl~  243 (244)
                      |+|+.+
T Consensus        85 d~vih~   90 (342)
T 1y1p_A           85 AGVAHI   90 (342)
T ss_dssp             SEEEEC
T ss_pred             CEEEEe
Confidence            998753

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=94.62  E-value=0.01  Score=49.24  Aligned_cols=67  Identities=18%  Similarity=0.245  Sum_probs=45.6

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       166 ~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      +++.|.|. |.||+.+++.| ..-|.+|++.+|++........          ..........+++.++++..|+|+.+
T Consensus         3 ~~ilVtGatG~iG~~l~~~L-~~~g~~V~~~~r~~~~~~~~~~----------~~~~~Dl~d~~~~~~~~~~~d~vi~~   70 (267)
T 3ay3_A            3 NRLLVTGAAGGVGSAIRPHL-GTLAHEVRLSDIVDLGAAEAHE----------EIVACDLADAQAVHDLVKDCDGIIHL   70 (267)
T ss_dssp             EEEEEESTTSHHHHHHGGGG-GGTEEEEEECCSSCCCCCCTTE----------EECCCCTTCHHHHHHHHTTCSEEEEC
T ss_pred             ceEEEECCCCHHHHHHHHHH-HhCCCEEEEEeCCCccccCCCc----------cEEEccCCCHHHHHHHHcCCCEEEEC
Confidence            57999997 99999999998 7889999999998643110000          00011122234577889999998754

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=94.62  E-value=0.036  Score=46.47  Aligned_cols=41  Identities=22%  Similarity=0.173  Sum_probs=31.0

Q ss_pred             ccccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          160 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       160 ~~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ...+.||++.|.|. |.||+.+|+.| ..-|++|+..+|+...
T Consensus        19 ~~m~~~k~~lVTGas~GIG~aia~~l-a~~G~~V~~~~r~~~~   60 (279)
T 3sju_A           19 SHMSRPQTAFVTGVSSGIGLAVARTL-AARGIAVYGCARDAKN   60 (279)
T ss_dssp             ------CEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             ccccCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            34578999999986 78999999999 5789999999998643

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=94.61  E-value=0.054  Score=46.88  Aligned_cols=70  Identities=21%  Similarity=0.313  Sum_probs=45.3

Q ss_pred             CCEEEEEc-CChHHHHHHHHHhccCC--cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccc---cCCHHHHhhhCC
Q 026023          165 GQTVGVIG-AGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR---ASSMDEVLREAD  238 (244)
Q Consensus       165 g~tvgIvG-~G~IG~~vA~~la~afG--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~ell~~sD  238 (244)
                      ..+|+|+| .|.+|..++..| ..-|  -+|..+|..+.........       ... .......   ..++.+.++.||
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L-~~~g~~~ev~l~Di~~~~~~~~dL~-------~~~-~~~~v~~~~~t~d~~~al~gaD   78 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLM-KMNPLVSVLHLYDVVNAPGVTADIS-------HMD-TGAVVRGFLGQQQLEAALTGMD   78 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHH-HHCTTEEEEEEEESSSHHHHHHHHH-------TSC-SSCEEEEEESHHHHHHHHTTCS
T ss_pred             CCEEEEECCCChHHHHHHHHH-HhCCCCCEEEEEeCCCcHhHHHHhh-------ccc-ccceEEEEeCCCCHHHHcCCCC
Confidence            35899999 899999999998 5566  6899999765421111111       001 1111111   236788999999


Q ss_pred             EEEEe
Q 026023          239 VVCTL  243 (244)
Q Consensus       239 ~Vvl~  243 (244)
                      +|+++
T Consensus        79 vVi~~   83 (326)
T 1smk_A           79 LIIVP   83 (326)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            99986

>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}

Probab=94.60  E-value=0.16  Score=43.96  Aligned_cols=109  Identities=15%  Similarity=0.076  Sum_probs=65.7

Q ss_pred             hhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcC-ChHHHHHHHHH
Q 026023          106 NKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYARMM  184 (244)
Q Consensus       106 ~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~-G~IG~~vA~~l  184 (244)
                      +-.+|+|.|..+.+.-|+=-.+=.+.+.  +..         |             .+.|.+|+++|= +++..+.+..+
T Consensus       122 ~~~~vPVINag~~~~HPtQaLaDl~Ti~--e~~---------g-------------~l~glkva~vGD~~rva~Sl~~~~  177 (323)
T 3gd5_A          122 HYAGIPVINALTDHEHPCQVVADLLTIR--ENF---------G-------------RLAGLKLAYVGDGNNVAHSLLLGC  177 (323)
T ss_dssp             HHHCSCEEEEECSSCCHHHHHHHHHHHH--HHH---------S-------------CCTTCEEEEESCCCHHHHHHHHHH
T ss_pred             HhCCCCEEeCCCCCCCcHHHHHHHHHHH--HHh---------C-------------CCCCCEEEEECCCCcHHHHHHHHH
Confidence            3457999998775544443222223322  111         1             378999999986 67888899987


Q ss_pred             hccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          185 VEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       185 a~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                       .-||++|....|..-...++..+...+.....   ...+....+++|.++.+|+|..
T Consensus       178 -~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~---g~~v~~~~d~~eav~~aDvvyt  231 (323)
T 3gd5_A          178 -AKVGMSIAVATPEGFTPDPAVSARASEIAGRT---GAEVQILRDPFEAARGAHILYT  231 (323)
T ss_dssp             -HHHTCEEEEECCTTCCCCHHHHHHHHHHHHHH---TCCEEEESCHHHHHTTCSEEEE
T ss_pred             -HHcCCEEEEECCCcccCCHHHHHHHHHHHHHc---CCeEEEECCHHHHhcCCCEEEE
Confidence             78999999999864221122111000000001   1123345799999999999975

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=94.60  E-value=0.055  Score=45.01  Aligned_cols=40  Identities=23%  Similarity=0.355  Sum_probs=34.9

Q ss_pred             cccCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          161 NLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       161 ~~l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .++.|+++.|.| .|.||+.+|+.| ..-|++|+..+|+...
T Consensus        27 ~~l~~k~vlITGasggIG~~la~~L-~~~G~~V~~~~r~~~~   67 (272)
T 1yb1_A           27 KSVTGEIVLITGAGHGIGRLTAYEF-AKLKSKLVLWDINKHG   67 (272)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             cccCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEEcCHHH
Confidence            468999999997 578999999999 6889999999998643

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=94.59  E-value=0.047  Score=44.41  Aligned_cols=37  Identities=27%  Similarity=0.360  Sum_probs=30.9

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEE-cCCcc
Q 026023          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYY-DLYQA  200 (244)
Q Consensus       163 l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~-~~~~~  200 (244)
                      +.|+++.|.|. |.||+.+++.| ..-|++|+.. +|++.
T Consensus         3 l~~~~vlItGasggiG~~~a~~l-~~~G~~V~~~~~r~~~   41 (247)
T 2hq1_A            3 LKGKTAIVTGSSRGLGKAIAWKL-GNMGANIVLNGSPAST   41 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHH-HHTTCEEEEEECTTCS
T ss_pred             CCCcEEEEECCCchHHHHHHHHH-HHCCCEEEEEcCcCHH
Confidence            67899999975 79999999999 6889999998 55543

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=94.58  E-value=0.065  Score=44.66  Aligned_cols=37  Identities=27%  Similarity=0.263  Sum_probs=33.1

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCC
Q 026023          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  198 (244)
Q Consensus       161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~  198 (244)
                      ..+.||++.|.|. |.||+.+|+.| ..-|++|+..+++
T Consensus         9 ~~l~gk~vlVTGas~gIG~~ia~~l-~~~G~~V~~~~r~   46 (278)
T 3sx2_A            9 GPLTGKVAFITGAARGQGRAHAVRL-AADGADIIAVDLC   46 (278)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEECC
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHH-HHCCCeEEEEecc
Confidence            4689999999986 67999999999 6889999999987

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=94.58  E-value=0.053  Score=46.02  Aligned_cols=40  Identities=25%  Similarity=0.263  Sum_probs=35.1

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .++.||++.|.|. |.||+.+|+.| ..-|++|+..+|+...
T Consensus        27 ~~l~gk~vlVTGas~gIG~~la~~l-~~~G~~V~~~~r~~~~   67 (301)
T 3tjr_A           27 SGFDGRAAVVTGGASGIGLATATEF-ARRGARLVLSDVDQPA   67 (301)
T ss_dssp             CCSTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             hccCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            3589999999986 67999999999 6889999999998654

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=94.57  E-value=0.068  Score=45.24  Aligned_cols=37  Identities=19%  Similarity=0.225  Sum_probs=33.2

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCC
Q 026023          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  198 (244)
Q Consensus       161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~  198 (244)
                      ..+.||++.|.|. |.||+++|+.| ..-|++|+.++++
T Consensus        24 ~~l~gk~~lVTGas~GIG~aia~~l-a~~G~~V~~~~~~   61 (299)
T 3t7c_A           24 GKVEGKVAFITGAARGQGRSHAITL-AREGADIIAIDVC   61 (299)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEECC
T ss_pred             cccCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEecc
Confidence            4689999999986 67999999999 6889999999987

>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis}

Probab=94.57  E-value=0.084  Score=47.29  Aligned_cols=76  Identities=20%  Similarity=0.284  Sum_probs=50.2

Q ss_pred             cCCCEEEEEc-----CCh---HHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh
Q 026023          163 LKGQTVGVIG-----AGR---IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL  234 (244)
Q Consensus       163 l~g~tvgIvG-----~G~---IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell  234 (244)
                      +.|++|+|+|     +|+   +...++..+ .-|||+|....|..-...++..+.-.......+   ..+....+++|.+
T Consensus       186 l~Glkva~vgd~~~s~Gd~nnVa~Sli~~l-~~lG~~v~l~~P~~~~~~p~~~~~a~~~a~~~G---~~v~~~~d~~eav  261 (418)
T 2yfk_A          186 LKGKKVAMTWAYSPSYGKPLSVPQGIVGLM-TRLGMDVVLAHPEGYEIMPEVEEVAKKNAAEFG---GNFTKTNSMAEAF  261 (418)
T ss_dssp             GTTCEEEEECCCCSSSCCCSHHHHHHHHHH-GGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHS---SEEEEESCHHHHH
T ss_pred             cCCCEEEEEeccccccCccchHHHHHHHHH-HHcCCEEEEECCccccCCHHHHHHHHHHHHHcC---CEEEEEcCHHHHh
Confidence            8899999998     454   999999997 789999999999642101111110000011111   1233457999999


Q ss_pred             hhCCEEEE
Q 026023          235 READVVCT  242 (244)
Q Consensus       235 ~~sD~Vvl  242 (244)
                      +.+|+|..
T Consensus       262 ~~ADVVyt  269 (418)
T 2yfk_A          262 KDADVVYP  269 (418)
T ss_dssp             TTCSEEEE
T ss_pred             cCCCEEEE
Confidence            99999975

>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X*

Probab=94.56  E-value=0.96  Score=39.04  Aligned_cols=100  Identities=11%  Similarity=0.027  Sum_probs=66.4

Q ss_pred             HhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEE-----EcCChHHHH
Q 026023          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGV-----IGAGRIGSA  179 (244)
Q Consensus       105 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgI-----vG~G~IG~~  179 (244)
                      ++-.+|+|.|..+.+.-|+=-.+=.+.+.  +.         .|    .       ..+. .+|++     +|=+++..+
T Consensus       131 A~~~~vPVINa~~~~~HPtQaLaDl~Ti~--e~---------~g----~-------~~l~-l~ia~a~~~~vGD~rva~S  187 (324)
T 1js1_X          131 IQHSGRPVFSMEAATRHPLQSFADLITIE--EY---------KK----T-------ARPK-VVMTWAPHPRPLPQAVPNS  187 (324)
T ss_dssp             HHHSSSCEEESSCSSCCHHHHHHHHHHHH--HH---------CS----S-------SSCE-EEEECCCCSSCCCSHHHHH
T ss_pred             HhhCCCCEEECCCCCCCcHHHHHHHHHHH--HH---------cC----C-------CCee-EEEEEEcccccCCcchHHH
Confidence            33457999998775555543333333332  11         01    0       1356 79999     999999999


Q ss_pred             HHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          180 YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       180 vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      ++..+ .-||++|....|..-...++..              .++....+++|.++.+|+|..
T Consensus       188 l~~~~-~~~G~~v~~~~P~~~~~~~~~~--------------~~~~~~~d~~eav~~aDvvy~  235 (324)
T 1js1_X          188 FAEWM-NATDYEFVITHPEGYELDPKFV--------------GNARVEYDQMKAFEGADFIYA  235 (324)
T ss_dssp             HHHHH-HTSSSEEEEECCTTCCCCHHHH--------------TTCEEESCHHHHHTTCSEEEE
T ss_pred             HHHHH-HHCCCEEEEeCCcccCCChhhc--------------cceEEECCHHHHhCCCCEEEe
Confidence            99997 7999999999996532212110              123345799999999999975

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=94.56  E-value=0.042  Score=45.33  Aligned_cols=38  Identities=5%  Similarity=-0.088  Sum_probs=31.6

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       163 l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +.+|++.|.|. |.||+++|+.| ..-|++|+..+++...
T Consensus         5 ~~~k~vlVTGas~gIG~~~a~~l-~~~G~~v~~~~~~~~~   43 (264)
T 3i4f_A            5 RFVRHALITAGTKGLGKQVTEKL-LAKGYSVTVTYHSDTT   43 (264)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESSCHH
T ss_pred             cccCEEEEeCCCchhHHHHHHHH-HHCCCEEEEEcCCChH
Confidence            56789999986 67999999999 6889999999777644

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=94.55  E-value=0.065  Score=44.66  Aligned_cols=40  Identities=20%  Similarity=0.231  Sum_probs=34.5

Q ss_pred             cccCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          161 NLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       161 ~~l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ..+.||++.|.| .|.||+.+++.| ..-|++|+..+|+...
T Consensus        28 ~~l~~k~vlVTGasggIG~~la~~l-~~~G~~V~~~~r~~~~   68 (279)
T 1xg5_A           28 ERWRDRLALVTGASGGIGAAVARAL-VQQGLKVVGCARTVGN   68 (279)
T ss_dssp             GGGTTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             cccCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEECChHH
Confidence            458999999997 489999999999 6789999999998643

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=94.55  E-value=0.09  Score=43.91  Aligned_cols=41  Identities=17%  Similarity=0.216  Sum_probs=35.4

Q ss_pred             ccccCCCEEEEEcCC-hHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          160 GNLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       160 ~~~l~g~tvgIvG~G-~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ...+.||++.|.|.+ .||+.+|+.| ..-|++|+..+|+...
T Consensus        22 ~~~l~~k~~lVTGas~GIG~aia~~l-~~~G~~V~~~~r~~~~   63 (277)
T 4fc7_A           22 PDLLRDKVAFITGGGSGIGFRIAEIF-MRHGCHTVIASRSLPR   63 (277)
T ss_dssp             TTTTTTCEEEEETTTSHHHHHHHHHH-HTTTCEEEEEESCHHH
T ss_pred             ccccCCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            456899999999865 7999999999 6889999999998643

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=94.54  E-value=0.065  Score=45.60  Aligned_cols=62  Identities=16%  Similarity=0.146  Sum_probs=45.1

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHhccCCcEEE-EEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--hCCEE
Q 026023          165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVV  240 (244)
Q Consensus       165 g~tvgIvG~-G~IG~~vA~~la~afG~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sD~V  240 (244)
                      ..+|.|+|+ |+.|+.+++.+ +..|++++ .++|.....                 ...+..-+.+++|+..  ..|++
T Consensus         7 ~~~VaVvGasG~~G~~~~~~l-~~~g~~~v~~VnP~~~g~-----------------~i~G~~vy~sl~el~~~~~~Dv~   68 (288)
T 1oi7_A            7 ETRVLVQGITGREGQFHTKQM-LTYGTKIVAGVTPGKGGM-----------------EVLGVPVYDTVKEAVAHHEVDAS   68 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHH-HHHTCEEEEEECTTCTTC-----------------EETTEEEESSHHHHHHHSCCSEE
T ss_pred             CCEEEEECCCCCHHHHHHHHH-HHcCCeEEEEECCCCCCc-----------------eECCEEeeCCHHHHhhcCCCCEE
Confidence            468999999 99999999998 77899854 677654110                 0112233468999998  89999


Q ss_pred             EEeC
Q 026023          241 CTLC  244 (244)
Q Consensus       241 vl~~  244 (244)
                      ++.+
T Consensus        69 Ii~v   72 (288)
T 1oi7_A           69 IIFV   72 (288)
T ss_dssp             EECC
T ss_pred             EEec
Confidence            8753

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=94.54  E-value=0.037  Score=46.61  Aligned_cols=74  Identities=15%  Similarity=0.187  Sum_probs=47.1

Q ss_pred             CCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcch---HHHHHHhhhhhhhhcCCCC--CccccccCCHHHHhhhCC
Q 026023          165 GQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT---RLEKFVTAYGQFLKANGEQ--PVTWKRASSMDEVLREAD  238 (244)
Q Consensus       165 g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ell~~sD  238 (244)
                      .++|.|.| .|.||+.+++.| ..-|.+|.+.+|+...   +..+....+    ...+..  .......+++.++++.+|
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L-~~~g~~V~~~~R~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~d~~~l~~~~~~~d   78 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNAS-ISLGHPTYVLFRPEVVSNIDKVQMLLYF----KQLGAKLIEASLDDHQRLVDALKQVD   78 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHH-HHTTCCEEEECCSCCSSCHHHHHHHHHH----HTTTCEEECCCSSCHHHHHHHHTTCS
T ss_pred             CCEEEEEcCCcHHHHHHHHHH-HhCCCcEEEEECCCcccchhHHHHHHHH----HhCCeEEEeCCCCCHHHHHHHHhCCC
Confidence            46799999 599999999998 6789999999998531   111111000    011111  112223346888999999


Q ss_pred             EEEEe
Q 026023          239 VVCTL  243 (244)
Q Consensus       239 ~Vvl~  243 (244)
                      +|+.+
T Consensus        79 ~vi~~   83 (313)
T 1qyd_A           79 VVISA   83 (313)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            98864

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=94.53  E-value=0.035  Score=49.79  Aligned_cols=35  Identities=31%  Similarity=0.405  Sum_probs=31.3

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcC
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDL  197 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~  197 (244)
                      ++.|++|.|-|+|++|+.+|++| ...|++|++++-
T Consensus       215 ~l~gk~vaVqG~GnVG~~~a~~L-~~~GakVVavsD  249 (419)
T 3aoe_E          215 DLRGARVVVQGLGQVGAAVALHA-ERLGMRVVAVAT  249 (419)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEEE
T ss_pred             CccCCEEEEECcCHHHHHHHHHH-HHCCCEEEEEEc
Confidence            58999999999999999999998 799999994443

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=94.52  E-value=0.049  Score=45.80  Aligned_cols=40  Identities=23%  Similarity=0.209  Sum_probs=34.5

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ..+.||++.|.|. |.||+.+|+.| ..-|++|+..+|+...
T Consensus         4 ~~l~gk~vlVTGas~GIG~aia~~l-a~~G~~V~~~~r~~~~   44 (280)
T 3tox_A            4 SRLEGKIAIVTGASSGIGRAAALLF-AREGAKVVVTARNGNA   44 (280)
T ss_dssp             CTTTTCEEEESSTTSHHHHHHHHHH-HHTTCEEEECCSCHHH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            3588999999986 67999999999 6889999999998653

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=94.51  E-value=0.068  Score=44.63  Aligned_cols=38  Identities=16%  Similarity=0.220  Sum_probs=33.6

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ  199 (244)
Q Consensus       161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~  199 (244)
                      .++.||++.|.|. |.||+.+|+.| ..-|++|+..+|+.
T Consensus         6 ~~l~~k~~lVTGas~gIG~a~a~~l-~~~G~~V~~~~r~~   44 (281)
T 3s55_A            6 ADFEGKTALITGGARGMGRSHAVAL-AEAGADIAICDRCE   44 (281)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECCS
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHH-HHCCCeEEEEeCCc
Confidence            4689999999985 67999999999 68999999999973

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=94.51  E-value=0.041  Score=45.56  Aligned_cols=38  Identities=18%  Similarity=0.157  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEcC---ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       162 ~l~g~tvgIvG~---G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      .+.||++.|.|.   |.||+.+|+.| ..-|++|+..+|+..
T Consensus         5 ~l~~k~vlVTGas~~~gIG~~ia~~l-~~~G~~V~~~~r~~~   45 (261)
T 2wyu_A            5 DLSGKKALVMGVTNQRSLGFAIAAKL-KEAGAEVALSYQAER   45 (261)
T ss_dssp             CCTTCEEEEESCCSSSSHHHHHHHHH-HHHTCEEEEEESCGG
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHH-HHCCCEEEEEcCCHH
Confidence            578999999997   59999999999 577999999999864

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=94.50  E-value=0.062  Score=45.17  Aligned_cols=39  Identities=23%  Similarity=0.210  Sum_probs=34.0

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      .++.||++.|.|. |.||+++|+.| ..-|++|+..+|+..
T Consensus         5 m~l~~k~vlVTGas~GIG~aia~~l-~~~G~~V~~~~r~~~   44 (285)
T 3sc4_A            5 MSLRGKTMFISGGSRGIGLAIAKRV-AADGANVALVAKSAE   44 (285)
T ss_dssp             -CCTTCEEEEESCSSHHHHHHHHHH-HTTTCEEEEEESCCS
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEECChh
Confidence            3589999999986 67999999999 688999999999865

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=94.50  E-value=0.062  Score=45.33  Aligned_cols=77  Identities=10%  Similarity=-0.048  Sum_probs=45.3

Q ss_pred             CCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcC-Ccch--HHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          165 GQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDL-YQAT--RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       165 g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      |++|.|.| .|.||+.+++.| ..-|.+|.+..| ++..  ..+.. ..+..................+++++++.+|+|
T Consensus         1 ~k~vlVTGatG~iG~~l~~~L-~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v   78 (322)
T 2p4h_X            1 KGRVCVTGGTGFLGSWIIKSL-LENGYSVNTTIRADPERKRDVSFL-TNLPGASEKLHFFNADLSNPDSFAAAIEGCVGI   78 (322)
T ss_dssp             CCEEEEESTTSHHHHHHHHHH-HHTTCEEEEECCCC----CCCHHH-HTSTTHHHHEEECCCCTTCGGGGHHHHTTCSEE
T ss_pred             CCEEEEECChhHHHHHHHHHH-HHCCCEEEEEEeCCccchhHHHHH-HhhhccCCceEEEecCCCCHHHHHHHHcCCCEE
Confidence            67899999 699999999998 688999999887 4321  00000 000000000000011223345688999999988


Q ss_pred             EEe
Q 026023          241 CTL  243 (244)
Q Consensus       241 vl~  243 (244)
                      +-+
T Consensus        79 ih~   81 (322)
T 2p4h_X           79 FHT   81 (322)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            753

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=94.45  E-value=0.098  Score=45.20  Aligned_cols=37  Identities=22%  Similarity=0.302  Sum_probs=33.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .|++|.|.|. |.||+.+++.+ +..|++|++++++...
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a-~~~Ga~V~~~~~~~~~  206 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYA-KAMGYRVLGIDGGEGK  206 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECSTTH
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHCCCcEEEEcCCHHH
Confidence            5789999999 89999999996 8999999999987654

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=94.44  E-value=0.096  Score=45.73  Aligned_cols=37  Identities=19%  Similarity=0.188  Sum_probs=33.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcch
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~  201 (244)
                      .|++|.|+|.|.||...++.+ +.+|+ +|++.+++...
T Consensus       191 ~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~~~~~  228 (373)
T 1p0f_A          191 PGSTCAVFGLGGVGFSAIVGC-KAAGASRIIGVGTHKDK  228 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHTCSEEEEECSCGGG
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEECCCHHH
Confidence            578999999999999999995 99999 89999988654

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=94.41  E-value=0.075  Score=44.41  Aligned_cols=37  Identities=22%  Similarity=0.266  Sum_probs=32.7

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCC
Q 026023          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  198 (244)
Q Consensus       161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~  198 (244)
                      ..+.||++.|.|. |.||+++|+.| ..-|++|+..+|+
T Consensus        11 ~~l~gk~~lVTGas~gIG~a~a~~l-a~~G~~V~~~~r~   48 (280)
T 3pgx_A           11 GSLQGRVAFITGAARGQGRSHAVRL-AAEGADIIACDIC   48 (280)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEECC
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEecc
Confidence            4689999999986 67999999999 6889999999884

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=94.41  E-value=0.072  Score=44.61  Aligned_cols=37  Identities=22%  Similarity=0.226  Sum_probs=32.9

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCC
Q 026023          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  198 (244)
Q Consensus       161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~  198 (244)
                      ..+.||++.|.|. |.||+.+|+.| ..-|++|+.++++
T Consensus         7 ~~l~~k~~lVTGas~gIG~aia~~l-a~~G~~V~~~~~~   44 (286)
T 3uve_A            7 GRVEGKVAFVTGAARGQGRSHAVRL-AQEGADIIAVDIC   44 (286)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEECC
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHH-HHCCCeEEEEecc
Confidence            4589999999986 57999999999 6889999999886

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=94.40  E-value=0.022  Score=51.21  Aligned_cols=37  Identities=14%  Similarity=0.220  Sum_probs=32.8

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~  199 (244)
                      ++.|++|.|.|+|++|+.+|++| ..+|++|++++.+.
T Consensus       209 ~l~g~~vaVqG~GnVG~~~a~~L-~~~GakvVavsD~~  245 (421)
T 2yfq_A          209 KMEDAKIAVQGFGNVGTFTVKNI-ERQGGKVCAIAEWD  245 (421)
T ss_dssp             CGGGSCEEEECCSHHHHHHHHHH-HHTTCCEEECCBCC
T ss_pred             CccCCEEEEECcCHHHHHHHHHH-HHCCCEEEEEEecC
Confidence            58999999999999999999998 89999999655544

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=94.39  E-value=0.081  Score=43.50  Aligned_cols=40  Identities=23%  Similarity=0.307  Sum_probs=35.0

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ..+.||++.|.|. |.||+.+|+.| ..-|++|+..+|+...
T Consensus         8 ~~l~~k~vlVTGas~gIG~aia~~l-~~~G~~V~~~~r~~~~   48 (252)
T 3f1l_A            8 DLLNDRIILVTGASDGIGREAAMTY-ARYGATVILLGRNEEK   48 (252)
T ss_dssp             TTTTTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            4589999999986 67999999999 6889999999998643

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=94.38  E-value=0.074  Score=48.10  Aligned_cols=65  Identities=18%  Similarity=0.321  Sum_probs=42.0

Q ss_pred             CCEEEEEcCChHHHHHHHHHhc---------cCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh
Q 026023          165 GQTVGVIGAGRIGSAYARMMVE---------GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR  235 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~---------afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~  235 (244)
                      -.+|||+|+|.||+.+++.+.+         ..+.+|.++..+.......+..            .  ...+.++++++.
T Consensus        10 ~irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~~------------~--~~~~~d~~ell~   75 (444)
T 3mtj_A           10 PIHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALAG------------G--LPLTTNPFDVVD   75 (444)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHHT------------T--CCEESCTHHHHT
T ss_pred             cccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhcc------------c--CcccCCHHHHhc
Confidence            3589999999999999876621         3677876665443332222110            1  123468999997


Q ss_pred             --hCCEEEEe
Q 026023          236 --EADVVCTL  243 (244)
Q Consensus       236 --~sD~Vvl~  243 (244)
                        +.|+|+.+
T Consensus        76 d~diDvVve~   85 (444)
T 3mtj_A           76 DPEIDIVVEL   85 (444)
T ss_dssp             CTTCCEEEEC
T ss_pred             CCCCCEEEEc
Confidence              47888865

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=94.36  E-value=0.11  Score=47.03  Aligned_cols=77  Identities=19%  Similarity=0.225  Sum_probs=47.5

Q ss_pred             CEEEEEcCChH-HHHHHHHHh---ccC-CcEEEEEcCCc--chHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCC
Q 026023          166 QTVGVIGAGRI-GSAYARMMV---EGF-KMNLIYYDLYQ--ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (244)
Q Consensus       166 ~tvgIvG~G~I-G~~vA~~la---~af-G~~V~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (244)
                      .+|+|+|.|.. |..++..|+   +.+ +-+|..+|+..  .. .+. .................+....++++.++.||
T Consensus         8 ~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~-~~~-~~~~~~~~~~~~~~~~~i~~t~D~~eal~gAD   85 (450)
T 1s6y_A            8 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEK-LEI-VGALAKRMVEKAGVPIEIHLTLDRRRALDGAD   85 (450)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHH-HHH-HHHHHHHHHHHTTCCCEEEEESCHHHHHTTCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHH-HHH-HHHHHHHHHhhcCCCcEEEEeCCHHHHhCCCC
Confidence            58999999999 888665553   345 56899999976  33 111 11111111001112333444468999999999


Q ss_pred             EEEEeC
Q 026023          239 VVCTLC  244 (244)
Q Consensus       239 ~Vvl~~  244 (244)
                      +|+++.
T Consensus        86 ~VVita   91 (450)
T 1s6y_A           86 FVTTQF   91 (450)
T ss_dssp             EEEECC
T ss_pred             EEEEcC
Confidence            999863

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=94.36  E-value=0.087  Score=45.95  Aligned_cols=37  Identities=22%  Similarity=0.248  Sum_probs=33.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcch
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~  201 (244)
                      .|++|.|+|.|.||...++.+ +.+|+ +|++.++++..
T Consensus       190 ~g~~VlV~GaG~vG~~avqla-~~~Ga~~Vi~~~~~~~~  227 (373)
T 2fzw_A          190 PGSVCAVFGLGGVGLAVIMGC-KVAGASRIIGVDINKDK  227 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHTCSEEEEECSCGGG
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcCCHHH
Confidence            578999999999999999995 99999 89999988654

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=94.34  E-value=0.023  Score=49.59  Aligned_cols=39  Identities=21%  Similarity=0.256  Sum_probs=34.3

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCC-cEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFK-MNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG-~~V~~~~~~~~~  201 (244)
                      .+.+++|.|.|. |.||+.+++.| ..-| .+|.+++|+...
T Consensus        29 ~~~~~~ilVtGatG~iG~~l~~~L-~~~g~~~V~~~~r~~~~   69 (377)
T 2q1s_A           29 KLANTNVMVVGGAGFVGSNLVKRL-LELGVNQVHVVDNLLSA   69 (377)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHH-HHTTCSEEEEECCCTTC
T ss_pred             HhCCCEEEEECCccHHHHHHHHHH-HHcCCceEEEEECCCCC
Confidence            578999999995 99999999998 6789 999999997643

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=94.32  E-value=0.073  Score=45.95  Aligned_cols=37  Identities=24%  Similarity=0.288  Sum_probs=33.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcch
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~  201 (244)
                      .|++|.|+|.|.||...++.+ +.+|+ +|++.+++...
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a-~~~Ga~~Vi~~~~~~~~  201 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVV-RASGAGPILVSDPNPYR  201 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHH-HHTTCCSEEEECSCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHH
Confidence            688999999999999999995 99999 99999988643

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=94.30  E-value=0.077  Score=48.51  Aligned_cols=37  Identities=16%  Similarity=0.243  Sum_probs=32.5

Q ss_pred             CCCEEEEEcCChHHHH-HHHHHhccCCcEEEEEcCCcch
Q 026023          164 KGQTVGVIGAGRIGSA-YARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~-vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ..++|.|+|.|.+|.. +|+.| +..|++|.++|....+
T Consensus        21 ~~~~v~viGiG~sG~s~~A~~l-~~~G~~V~~~D~~~~~   58 (494)
T 4hv4_A           21 RVRHIHFVGIGGAGMGGIAEVL-ANEGYQISGSDLAPNS   58 (494)
T ss_dssp             -CCEEEEETTTSTTHHHHHHHH-HHTTCEEEEECSSCCH
T ss_pred             cCCEEEEEEEcHhhHHHHHHHH-HhCCCeEEEEECCCCH
Confidence            3579999999999996 89998 8999999999987654

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=94.30  E-value=0.07  Score=43.95  Aligned_cols=41  Identities=10%  Similarity=0.069  Sum_probs=32.2

Q ss_pred             cccccCCCEEEEEc-CChHHHHHHHHHhccCC---cEEEEEcCCcc
Q 026023          159 VGNLLKGQTVGVIG-AGRIGSAYARMMVEGFK---MNLIYYDLYQA  200 (244)
Q Consensus       159 ~~~~l~g~tvgIvG-~G~IG~~vA~~la~afG---~~V~~~~~~~~  200 (244)
                      ....+.++++.|.| .|.||+.+|+.| ...|   ++|+..+|+..
T Consensus        15 ~~~~~~~k~vlITGasggIG~~la~~L-~~~G~~~~~V~~~~r~~~   59 (267)
T 1sny_A           15 VPRGSHMNSILITGCNRGLGLGLVKAL-LNLPQPPQHLFTTCRNRE   59 (267)
T ss_dssp             -----CCSEEEESCCSSHHHHHHHHHH-HTSSSCCSEEEEEESCTT
T ss_pred             cccCCCCCEEEEECCCCcHHHHHHHHH-HhcCCCCcEEEEEecChh
Confidence            34578999999997 589999999999 6889   99999999864

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=94.30  E-value=0.063  Score=45.16  Aligned_cols=40  Identities=15%  Similarity=0.025  Sum_probs=32.8

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .++.||++.|.|. |.||+++|+.| ..-|++|+..+|+...
T Consensus        24 ~~~~~k~~lVTGas~GIG~aia~~l-a~~G~~V~~~~r~~~~   64 (283)
T 3v8b_A           24 MNQPSPVALITGAGSGIGRATALAL-AADGVTVGALGRTRTE   64 (283)
T ss_dssp             ---CCCEEEEESCSSHHHHHHHHHH-HHTTCEEEEEESSHHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            4688999999985 67999999999 6889999999998643

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=94.30  E-value=0.067  Score=44.79  Aligned_cols=40  Identities=28%  Similarity=0.321  Sum_probs=34.8

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .++.||++.|.|. |.||+++|+.| ..-|++|+..+|+...
T Consensus        29 ~~l~gk~~lVTGas~GIG~aia~~l-a~~G~~V~~~~r~~~~   69 (275)
T 4imr_A           29 FGLRGRTALVTGSSRGIGAAIAEGL-AGAGAHVILHGVKPGS   69 (275)
T ss_dssp             HCCTTCEEEETTCSSHHHHHHHHHH-HHTTCEEEEEESSTTT
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEcCCHHH
Confidence            3689999999986 68999999999 6889999999998654

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=94.30  E-value=0.067  Score=46.14  Aligned_cols=73  Identities=16%  Similarity=0.174  Sum_probs=44.3

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCc--EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      +|+|+|.|.+|..+|..| ..-|.  +|..+|..+........+ +....... .....+.. .+..+.++.||+|+++
T Consensus         2 kv~ViGaG~vG~~~a~~l-~~~~~~~el~l~D~~~~k~~g~a~D-L~~~~~~~-~~~~~v~~-~~~~~a~~~aDvVii~   76 (314)
T 3nep_X            2 KVTVIGAGNVGATVAECV-ARQDVAKEVVMVDIKDGMPQGKALD-MRESSPIH-GFDTRVTG-TNDYGPTEDSDVCIIT   76 (314)
T ss_dssp             EEEEECCSHHHHHHHHHH-HHHTCSSEEEEECSSTTHHHHHHHH-HHHHHHHH-TCCCEEEE-ESSSGGGTTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHH-HhCCCCCEEEEEeCchHHHHHHHHH-Hhcccccc-CCCcEEEE-CCCHHHhCCCCEEEEC
Confidence            799999999999999987 45566  899999987431111011 00000000 00111111 2457889999999986

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=94.28  E-value=0.055  Score=44.43  Aligned_cols=39  Identities=28%  Similarity=0.278  Sum_probs=33.8

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ++.|+++.|.|. |.||+.+++.| ..-|++|+..+|+...
T Consensus         4 ~~~~k~vlITGasggiG~~la~~l-~~~G~~V~~~~r~~~~   43 (264)
T 2pd6_A            4 RLRSALALVTGAGSGIGRAVSVRL-AGEGATVAACDLDRAA   43 (264)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSHHH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCChHH
Confidence            478999999975 79999999999 6889999999998644

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=94.28  E-value=0.081  Score=45.61  Aligned_cols=67  Identities=15%  Similarity=0.083  Sum_probs=42.9

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEE-EcCCcch---HHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhh--CCE
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQAT---RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADV  239 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--sD~  239 (244)
                      .++||||+|.+|+..++.+  .-+++|.+ +|+++.+   ..++..+.|          .++...+.++++++++  .|+
T Consensus         3 ~rvgiiG~G~~~~~~~~~l--~~~~~lvav~d~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~ll~~~~vD~   70 (337)
T 3ip3_A            3 LKICVIGSSGHFRYALEGL--DEECSITGIAPGVPEEDLSKLEKAISEM----------NIKPKKYNNWWEMLEKEKPDI   70 (337)
T ss_dssp             EEEEEECSSSCHHHHHTTC--CTTEEEEEEECSSTTCCCHHHHHHHHTT----------TCCCEECSSHHHHHHHHCCSE
T ss_pred             eEEEEEccchhHHHHHHhc--CCCcEEEEEecCCchhhHHHHHHHHHHc----------CCCCcccCCHHHHhcCCCCCE
Confidence            3799999999999766653  45778775 6665421   222211111          1112345799999986  899


Q ss_pred             EEEeC
Q 026023          240 VCTLC  244 (244)
Q Consensus       240 Vvl~~  244 (244)
                      |+++.
T Consensus        71 V~I~t   75 (337)
T 3ip3_A           71 LVINT   75 (337)
T ss_dssp             EEECS
T ss_pred             EEEeC
Confidence            99863

>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}

Probab=94.28  E-value=0.28  Score=42.67  Aligned_cols=114  Identities=17%  Similarity=0.154  Sum_probs=66.8

Q ss_pred             HHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcC-ChHHHHHH
Q 026023          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYA  181 (244)
Q Consensus       103 ~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~-G~IG~~vA  181 (244)
                      ..++-.+|+|.|..+.+.-|+=-.+=.+.+.  +.+                   ..+..+.|.+|+++|= +++..+++
T Consensus       134 ~lA~~~~vPVINag~~~~HPtQaLaDl~Ti~--e~~-------------------~~G~~l~glkva~vGD~~rva~Sl~  192 (339)
T 4a8t_A          134 DLANCATIPVINGMSDYNHPTQELGDLCTMV--EHL-------------------PEGKKLEDCKVVFVGDATQVCFSLG  192 (339)
T ss_dssp             HHHHHCSSCEEECCCSSCCHHHHHHHHHHHH--HTC-------------------CTTCCGGGCEEEEESSCCHHHHHHH
T ss_pred             HHHHhCCCCEEECCCCCcCcHHHHHHHHHHH--HHh-------------------hcCCCCCCCEEEEECCCchhHHHHH
Confidence            3344568999999775544443222222222  111                   0012488999999986 67888999


Q ss_pred             HHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       182 ~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      ..+ .-||++|....|..-...++..+...+.....+   ..+....+++ .++.+|+|..
T Consensus       193 ~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g---~~v~~~~d~~-av~~aDvvyt  248 (339)
T 4a8t_A          193 LIT-TKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSG---GSFLVTDDAS-SVEGADFLYT  248 (339)
T ss_dssp             HHH-HHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHC---CEEEEECCGG-GGTTCSEEEE
T ss_pred             HHH-HHcCCEEEEECCcccCCCHHHHHHHHHHHHHcC---CEEEEECChh-HHcCCCEEEe
Confidence            997 789999999998643211221110000000011   1233457899 9999999974

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=94.26  E-value=0.089  Score=45.91  Aligned_cols=32  Identities=16%  Similarity=0.354  Sum_probs=25.6

Q ss_pred             CEEEEEc-CChHHHHHHHHHhccC-CcEEEEEcCC
Q 026023          166 QTVGVIG-AGRIGSAYARMMVEGF-KMNLIYYDLY  198 (244)
Q Consensus       166 ~tvgIvG-~G~IG~~vA~~la~af-G~~V~~~~~~  198 (244)
                      .+|||+| +|.||+++.+.| ... .+++.++.+.
T Consensus         5 ~kV~IiGAtG~iG~~llr~L-~~~p~~elv~v~s~   38 (345)
T 2ozp_A            5 KTLSIVGASGYAGGEFLRLA-LSHPYLEVKQVTSR   38 (345)
T ss_dssp             EEEEEETTTSHHHHHHHHHH-HTCTTEEEEEEBCS
T ss_pred             CEEEEECCCCHHHHHHHHHH-HcCCCcEEEEEECc
Confidence            4799999 899999999998 444 4587776654

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=94.26  E-value=0.047  Score=47.72  Aligned_cols=37  Identities=16%  Similarity=0.448  Sum_probs=33.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .|++|.|+|.|.||...++.+ +.+|++|++++++...
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a-~~~Ga~Vi~~~~~~~~  223 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFA-KAFGSKVTVISTSPSK  223 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCGGG
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            688999999999999999995 9999999999988654

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=94.25  E-value=0.087  Score=43.89  Aligned_cols=37  Identities=19%  Similarity=0.270  Sum_probs=33.1

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCC
Q 026023          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  198 (244)
Q Consensus       161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~  198 (244)
                      ..+.||++.|.|. |.||+.+|+.| ..-|++|+.++++
T Consensus         6 ~~l~gk~vlVTGas~gIG~~ia~~l-~~~G~~V~~~~~~   43 (287)
T 3pxx_A            6 GRVQDKVVLVTGGARGQGRSHAVKL-AEEGADIILFDIC   43 (287)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECC
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHH-HHCCCeEEEEccc
Confidence            4689999999986 57999999999 6889999999987

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=94.24  E-value=0.054  Score=44.94  Aligned_cols=40  Identities=25%  Similarity=0.221  Sum_probs=34.9

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .++.||++.|.|. |.||+.+|+.| ..-|++|+..+|+...
T Consensus         6 ~~l~~k~vlVTGas~gIG~aia~~l-~~~G~~V~~~~r~~~~   46 (262)
T 3pk0_A            6 FDLQGRSVVVTGGTKGIGRGIATVF-ARAGANVAVAGRSTAD   46 (262)
T ss_dssp             TCCTTCEEEETTCSSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            4689999999984 78999999999 6889999999998654

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=94.23  E-value=0.062  Score=45.02  Aligned_cols=41  Identities=24%  Similarity=0.311  Sum_probs=35.6

Q ss_pred             ccccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          160 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       160 ~~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ...+.|+++.|.|. |.||+++++.| ..-|++|+..+|+...
T Consensus        23 ~~~~~~k~vlITGasggIG~~la~~l-~~~G~~V~~~~r~~~~   64 (286)
T 1xu9_A           23 PEMLQGKKVIVTGASKGIGREMAYHL-AKMGAHVVVTARSKET   64 (286)
T ss_dssp             GGGGTTCEEEESSCSSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             hhhcCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            34589999999987 89999999998 6889999999998643

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=94.23  E-value=0.095  Score=43.83  Aligned_cols=39  Identities=18%  Similarity=0.126  Sum_probs=34.2

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ++.||++.|.|. |.||+.+|+.| ..-|++|+..+|+...
T Consensus        26 ~l~~k~vlVTGas~gIG~aia~~L-~~~G~~V~~~~r~~~~   65 (276)
T 2b4q_A           26 SLAGRIALVTGGSRGIGQMIAQGL-LEAGARVFICARDAEA   65 (276)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEECSCHHH
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            578999999985 78999999999 6889999999998643

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=94.23  E-value=0.077  Score=45.73  Aligned_cols=73  Identities=19%  Similarity=0.234  Sum_probs=43.2

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCc--EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      .+|+|+|.|.+|..++-.| ..-|.  +|..+|...... +.....+.... .. .....+. ..+ .+.++.||+|+++
T Consensus         8 ~KI~IiGaG~vG~~~a~~l-~~~~~~~ev~L~Di~~~~~-~g~~~dl~~~~-~~-~~~~~i~-~~~-~~a~~~aDvVii~   81 (318)
T 1y6j_A            8 SKVAIIGAGFVGASAAFTM-ALRQTANELVLIDVFKEKA-IGEAMDINHGL-PF-MGQMSLY-AGD-YSDVKDCDVIVVT   81 (318)
T ss_dssp             CCEEEECCSHHHHHHHHHH-HHTTCSSEEEEECCC---C-CHHHHHHTTSC-CC-TTCEEEC---C-GGGGTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHH-HhCCCCCEEEEEeCChHHH-HHHHHHHHHhH-Hh-cCCeEEE-ECC-HHHhCCCCEEEEc
Confidence            5899999999999999998 56677  999999875321 11011110000 00 0111122 233 5679999999986


Q ss_pred             C
Q 026023          244 C  244 (244)
Q Consensus       244 ~  244 (244)
                      .
T Consensus        82 ~   82 (318)
T 1y6j_A           82 A   82 (318)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=94.22  E-value=0.072  Score=45.37  Aligned_cols=37  Identities=27%  Similarity=0.263  Sum_probs=32.1

Q ss_pred             CCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .+++|.|.| .|.||+.+++.| ..-|.+|++.+|+...
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L-~~~G~~V~~~~r~~~~   41 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVEL-LAHGYDVVIADNLVNS   41 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHH-HHTTCEEEEECCCSSS
T ss_pred             CCcEEEEecCCcHHHHHHHHHH-HHCCCcEEEEecCCcc
Confidence            467999998 699999999999 6889999999997643

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=94.22  E-value=0.073  Score=43.93  Aligned_cols=38  Identities=24%  Similarity=0.347  Sum_probs=32.6

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       163 l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +.||++.|.|. |.||+.+|+.| ..-|++|+..+|+...
T Consensus         2 l~~k~vlVTGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~   40 (260)
T 1x1t_A            2 LKGKVAVVTGSTSGIGLGIATAL-AAQGADIVLNGFGDAA   40 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHH-HHTTCEEEEECCSCHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHH-HHcCCEEEEEeCCcch
Confidence            57889998874 78999999999 6889999999998643

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=94.21  E-value=0.055  Score=49.57  Aligned_cols=61  Identities=23%  Similarity=0.313  Sum_probs=44.8

Q ss_pred             CCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          165 GQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       165 g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      +++|.|.| .|.||+.+++.| ..-|.+|++++|+.... +.                +.+...+.+.+.+..+|+|+.+
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L-~~~G~~V~~l~R~~~~~-~~----------------v~~d~~~~~~~~l~~~D~Vih~  208 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQL-QTGGHEVIQLVRKEPKP-GK----------------RFWDPLNPASDLLDGADVLVHL  208 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESSSCCT-TC----------------EECCTTSCCTTTTTTCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEECCCCCc-cc----------------eeecccchhHHhcCCCCEEEEC
Confidence            67999999 699999999998 68899999999986541 00                0011113456777899998753

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=94.21  E-value=0.074  Score=44.06  Aligned_cols=40  Identities=20%  Similarity=0.233  Sum_probs=34.5

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ..+.||++.|.|. |.||+.+|+.| ..-|++|+..+|+...
T Consensus         7 ~~l~~k~vlVTGas~gIG~aia~~l-~~~G~~V~~~~r~~~~   47 (264)
T 3ucx_A            7 GLLTDKVVVISGVGPALGTTLARRC-AEQGADLVLAARTVER   47 (264)
T ss_dssp             CTTTTCEEEEESCCTTHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCcCCcEEEEECCCcHHHHHHHHHH-HHCcCEEEEEeCCHHH
Confidence            3589999999987 56999999999 6889999999998643

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=94.21  E-value=0.066  Score=44.37  Aligned_cols=40  Identities=15%  Similarity=0.252  Sum_probs=35.1

Q ss_pred             cccCCCEEEEEcCC---hHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          161 NLLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       161 ~~l~g~tvgIvG~G---~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .+|.||++.|-|.+   -||+++|+.| ..-|++|+..+|+.+.
T Consensus         2 ~~l~gK~alVTGaa~~~GIG~aiA~~l-a~~Ga~Vvi~~r~~~~   44 (256)
T 4fs3_A            2 LNLENKTYVIMGIANKRSIAFGVAKVL-DQLGAKLVFTYRKERS   44 (256)
T ss_dssp             CCCTTCEEEEECCCSTTCHHHHHHHHH-HHTTCEEEEEESSGGG
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            36899999999974   5999999999 6999999999998654

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=94.21  E-value=0.054  Score=48.12  Aligned_cols=101  Identities=15%  Similarity=0.179  Sum_probs=64.6

Q ss_pred             CcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHhccC
Q 026023          109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF  188 (244)
Q Consensus       109 gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~IG~~vA~~la~af  188 (244)
                      ++++.|. +.  +-+|=-+++.+++..|-                     .+..+...+|.|+|.|..|..+|+++ ..+
T Consensus       156 ~ipvf~D-Di--qGTa~V~lAall~al~l---------------------~g~~l~d~kVVi~GAGaAG~~iA~ll-~~~  210 (398)
T 2a9f_A          156 HIPVFHD-DQ--HGTAIVVLAAIFNSLKL---------------------LKKSLDEVSIVVNGGGSAGLSITRKL-LAA  210 (398)
T ss_dssp             SSCEEEH-HH--HHHHHHHHHHHHHHHHT---------------------TTCCTTSCEEEEECCSHHHHHHHHHH-HHH
T ss_pred             Ccceecc-hh--hhHHHHHHHHHHHHHHH---------------------hCCCCCccEEEEECCCHHHHHHHHHH-HHc
Confidence            5777773 22  33444556666665541                     23468899999999999999999997 899


Q ss_pred             Cc-EEEEEcCCc-----c-hHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023          189 KM-NLIYYDLYQ-----A-TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC  241 (244)
Q Consensus       189 G~-~V~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv  241 (244)
                      |+ +|..+|++.     + +...++-..|..   ...  .  .....+|.|.++.+|+++
T Consensus       211 Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~---~~~--~--~~~~~~L~eav~~ADV~I  263 (398)
T 2a9f_A          211 GATKVTVVDKFGIINEQEAAQLAPHHLDIAK---VTN--R--EFKSGTLEDALEGADIFI  263 (398)
T ss_dssp             TCCEEEEEETTEECCTTCCCSCCC---CHHH---HHS--C--TTCCCSCSHHHHTTCSEE
T ss_pred             CCCeEEEEECCCcccCCccccchHHHHHHhh---ccC--c--ccchhhHHHHhccCCEEE
Confidence            99 999999984     1 101111111110   000  0  112357999999999986

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=94.21  E-value=0.069  Score=45.89  Aligned_cols=37  Identities=22%  Similarity=0.218  Sum_probs=33.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .|++|.|.|. |.||..+++.+ +.+|++|+++++++..
T Consensus       149 ~g~~vlI~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~~~~~~  186 (336)
T 4b7c_A          149 NGETVVISGAAGAVGSVAGQIA-RLKGCRVVGIAGGAEK  186 (336)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESSHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            5889999999 99999999996 9999999999988644

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=94.20  E-value=0.13  Score=43.35  Aligned_cols=39  Identities=23%  Similarity=0.123  Sum_probs=34.1

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      ..+.||++.|.|. |.||+.+|+.| ..-|++|+..+++..
T Consensus        45 ~~l~~k~vlVTGas~GIG~aia~~l-a~~G~~V~~~~~~~~   84 (294)
T 3r3s_A           45 GRLKDRKALVTGGDSGIGRAAAIAY-AREGADVAINYLPAE   84 (294)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEECCGGG
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCcc
Confidence            4689999999986 68999999999 688999999998743

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=94.20  E-value=0.087  Score=43.93  Aligned_cols=37  Identities=27%  Similarity=0.267  Sum_probs=32.6

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCC
Q 026023          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  198 (244)
Q Consensus       161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~  198 (244)
                      ..+.||++.|.|. |.||+.+|+.| ..-|++|+..+++
T Consensus         7 ~~l~~k~~lVTGas~GIG~a~a~~l-a~~G~~V~~~~r~   44 (277)
T 3tsc_A            7 GKLEGRVAFITGAARGQGRAHAVRM-AAEGADIIAVDIA   44 (277)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEECC
T ss_pred             cccCCCEEEEECCccHHHHHHHHHH-HHcCCEEEEEecc
Confidence            3589999999986 67999999999 6889999999884

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=94.19  E-value=0.11  Score=45.04  Aligned_cols=77  Identities=13%  Similarity=0.105  Sum_probs=46.1

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCc--EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~  239 (244)
                      ....++|+|+|.|.+|..+|..| -.-|.  +|..+|...........+ +.... ... .........+.+ .++.||+
T Consensus        16 ~~~~~kV~ViGaG~vG~~~a~~l-~~~~~~~el~L~Di~~~~~~g~a~D-L~~~~-~~~-~~~~i~~~~d~~-~~~~aDi   90 (331)
T 4aj2_A           16 QVPQNKITVVGVGAVGMACAISI-LMKDLADELALVDVIEDKLKGEMMD-LQHGS-LFL-KTPKIVSSKDYS-VTANSKL   90 (331)
T ss_dssp             -CCSSEEEEECCSHHHHHHHHHH-HHTTCCSEEEEECSCHHHHHHHHHH-HHHTG-GGC-SCCEEEECSSGG-GGTTEEE
T ss_pred             cCCCCEEEEECCCHHHHHHHHHH-HhCCCCceEEEEeCChHHHHHHHHh-hhhhh-hcc-CCCeEEEcCCHH-HhCCCCE
Confidence            45678999999999999999887 34465  899999975421111111 10000 000 011122234555 5999999


Q ss_pred             EEEe
Q 026023          240 VCTL  243 (244)
Q Consensus       240 Vvl~  243 (244)
                      |+++
T Consensus        91 Vvi~   94 (331)
T 4aj2_A           91 VIIT   94 (331)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            9986

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=94.19  E-value=0.031  Score=50.14  Aligned_cols=37  Identities=22%  Similarity=0.190  Sum_probs=32.2

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCC
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~  198 (244)
                      .++.|+||.|-|+|++|+.+|++| ...|++|++++-+
T Consensus       217 ~~l~g~~vaVqG~GnVG~~aa~~l-~e~GakVVavsD~  253 (424)
T 3k92_A          217 IKLQNARIIIQGFGNAGSFLAKFM-HDAGAKVIGISDA  253 (424)
T ss_dssp             CCGGGCEEEEECCSHHHHHHHHHH-HHHTCEEEEEECS
T ss_pred             CCcccCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECC
Confidence            358999999999999999999998 8999998755544

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=94.19  E-value=0.058  Score=45.06  Aligned_cols=40  Identities=28%  Similarity=0.130  Sum_probs=34.6

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ..+.||++.|.|. |.||+.+|+.| ..-|++|+..+|+...
T Consensus        24 ~~l~~k~~lVTGas~GIG~aia~~l-a~~G~~V~~~~r~~~~   64 (270)
T 3ftp_A           24 KTLDKQVAIVTGASRGIGRAIALEL-ARRGAMVIGTATTEAG   64 (270)
T ss_dssp             CTTTTCEEEETTCSSHHHHHHHHHH-HHTTCEEEEEESSHHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            4689999999986 67999999999 6889999999998643

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=94.18  E-value=0.077  Score=43.69  Aligned_cols=39  Identities=23%  Similarity=0.307  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ++.||++.|.|. |.||+.+|+.| ..-|++|+..+|+...
T Consensus         2 ~l~~k~vlVTGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~   41 (254)
T 1hdc_A            2 DLSGKTVIITGGARGLGAEAARQA-VAAGARVVLADVLDEE   41 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            368899999986 89999999999 6889999999998643

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=94.18  E-value=0.058  Score=44.17  Aligned_cols=38  Identities=18%  Similarity=0.044  Sum_probs=31.4

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       163 l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +.+|++.|.|. |.||+.+|+.| ..-|++|+..+++..+
T Consensus         2 l~~k~~lVTGas~gIG~~ia~~l-~~~G~~V~~~~~~~~~   40 (246)
T 3osu_A            2 KMTKSALVTGASRGIGRSIALQL-AEEGYNVAVNYAGSKE   40 (246)
T ss_dssp             CCSCEEEETTCSSHHHHHHHHHH-HHTTCEEEEEESSCHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCCHH
Confidence            46788888875 78999999999 6889999988876544

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=94.18  E-value=0.088  Score=46.12  Aligned_cols=37  Identities=24%  Similarity=0.335  Sum_probs=33.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcch
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~  201 (244)
                      .|.+|.|+|.|.||...++.+ +.+|+ +|+++++++..
T Consensus       193 ~g~~VlV~GaG~vG~~a~q~a-~~~Ga~~Vi~~~~~~~~  230 (378)
T 3uko_A          193 PGSNVAIFGLGTVGLAVAEGA-KTAGASRIIGIDIDSKK  230 (378)
T ss_dssp             TTCCEEEECCSHHHHHHHHHH-HHHTCSCEEEECSCTTH
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcCCHHH
Confidence            578999999999999999995 99999 89999988754

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=94.18  E-value=0.072  Score=46.13  Aligned_cols=73  Identities=22%  Similarity=0.241  Sum_probs=45.2

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCCc--EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      ..+|+|+|.|.+|..++-.| ..-+.  ++..+|...... +.....+.... ... ....+.  .+..+.++.||+|++
T Consensus         9 ~~KI~IiGaG~vG~~la~~l-~~~~~~~el~L~Di~~~~~-~g~~~dl~~~~-~~~-~~~~i~--~~~~~a~~~aDvVii   82 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAM-VLQGIAQEIGIVDIFKDKT-KGDAIDLSNAL-PFT-SPKKIY--SAEYSDAKDADLVVI   82 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHH-HHHTCCSEEEEECSCHHHH-HHHHHHHHTTG-GGS-CCCEEE--ECCGGGGGGCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHH-HcCCCCCEEEEEeCCchHh-HHHHHHHHHHH-Hhc-CCeEEE--ECCHHHhCCCCEEEE
Confidence            36899999999999999987 45555  899999975331 11111111100 000 122222  144677999999998


Q ss_pred             e
Q 026023          243 L  243 (244)
Q Consensus       243 ~  243 (244)
                      .
T Consensus        83 ~   83 (326)
T 2zqz_A           83 T   83 (326)
T ss_dssp             C
T ss_pred             c
Confidence            6

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=94.17  E-value=0.07  Score=46.61  Aligned_cols=37  Identities=19%  Similarity=0.212  Sum_probs=32.5

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCC
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY  198 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~  198 (244)
                      ..|.+++|.|+|+|.+|.++|+.| -..|. ++..+|..
T Consensus        32 ~~L~~~~VlivG~GGlG~~ia~~L-a~~Gvg~itlvD~d   69 (346)
T 1y8q_A           32 KRLRASRVLLVGLKGLGAEIAKNL-ILAGVKGLTMLDHE   69 (346)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHH-HHHTCSEEEEECCC
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHH-HHcCCCEEEEEECC
Confidence            458999999999999999999999 57788 78888754

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=94.17  E-value=0.068  Score=48.73  Aligned_cols=78  Identities=15%  Similarity=0.319  Sum_probs=47.3

Q ss_pred             CCEEEEEcCChH-HHHHHHHHhc---cC-CcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023          165 GQTVGVIGAGRI-GSAYARMMVE---GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (244)
Q Consensus       165 g~tvgIvG~G~I-G~~vA~~la~---af-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~  239 (244)
                      ..+|+|+|.|.. |..+|..|++   .+ +-+|..+|+.... .+...+......... .....+....++++.++.||+
T Consensus        28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~-~~~~~~~~~~~l~~~-~~~~~I~~t~D~~eal~~AD~  105 (472)
T 1u8x_X           28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKER-QDRIAGACDVFIREK-APDIEFAATTDPEEAFTDVDF  105 (472)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHH-HHHHHHHHHHHHHHH-CTTSEEEEESCHHHHHSSCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHH-HHHHHHHHHHHhccC-CCCCEEEEECCHHHHHcCCCE
Confidence            458999999998 6666644433   45 6689999998643 111111000111111 112334444689999999999


Q ss_pred             EEEeC
Q 026023          240 VCTLC  244 (244)
Q Consensus       240 Vvl~~  244 (244)
                      |++++
T Consensus       106 VViaa  110 (472)
T 1u8x_X          106 VMAHI  110 (472)
T ss_dssp             EEECC
T ss_pred             EEEcC
Confidence            99864

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=94.15  E-value=0.052  Score=46.02  Aligned_cols=41  Identities=20%  Similarity=0.088  Sum_probs=35.5

Q ss_pred             ccccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          160 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       160 ~~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ..++.||++.|.|. |.||+.+|+.| ..-|++|+..+|+...
T Consensus        36 m~~l~~k~vlVTGas~GIG~aia~~l-a~~G~~V~~~~r~~~~   77 (293)
T 3rih_A           36 MFDLSARSVLVTGGTKGIGRGIATVF-ARAGANVAVAARSPRE   77 (293)
T ss_dssp             TTCCTTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESSGGG
T ss_pred             ccCCCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            35689999999986 67999999999 6889999999998654

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=94.11  E-value=0.063  Score=45.32  Aligned_cols=57  Identities=19%  Similarity=0.172  Sum_probs=42.8

Q ss_pred             CCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--hCCEEE
Q 026023          165 GQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVVC  241 (244)
Q Consensus       165 g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sD~Vv  241 (244)
                      +++|.|.| .|.||+.+++.| ..-|.+|++++++....                     ....+++.++++  ..|+|+
T Consensus         3 ~~~ilVtGatG~iG~~l~~~L-~~~g~~v~~~~r~~~~D---------------------~~d~~~~~~~~~~~~~d~vi   60 (321)
T 1e6u_A            3 KQRVFIAGHRGMVGSAIRRQL-EQRGDVELVLRTRDELN---------------------LLDSRAVHDFFASERIDQVY   60 (321)
T ss_dssp             CEEEEEETTTSHHHHHHHHHH-TTCTTEEEECCCTTTCC---------------------TTCHHHHHHHHHHHCCSEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHH-HhCCCeEEEEecCccCC---------------------ccCHHHHHHHHHhcCCCEEE
Confidence            57899999 599999999998 78899999988764210                     112235777888  889887


Q ss_pred             Ee
Q 026023          242 TL  243 (244)
Q Consensus       242 l~  243 (244)
                      .+
T Consensus        61 h~   62 (321)
T 1e6u_A           61 LA   62 (321)
T ss_dssp             EC
T ss_pred             Ec
Confidence            53

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=94.09  E-value=0.087  Score=46.45  Aligned_cols=37  Identities=38%  Similarity=0.334  Sum_probs=32.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcch
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~  201 (244)
                      .|++|.|+|.|.||...++.+ +.+|+ +|++.+++...
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlA-k~~Ga~~Vi~~~~~~~~  222 (398)
T 1kol_A          185 PGSTVYVAGAGPVGLAAAASA-RLLGAAVVIVGDLNPAR  222 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEEESCHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHH-HHCCCCeEEEEcCCHHH
Confidence            578999999999999999995 99999 79999987644

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=94.09  E-value=0.046  Score=45.92  Aligned_cols=40  Identities=23%  Similarity=0.226  Sum_probs=31.7

Q ss_pred             cccccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023          159 VGNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ  199 (244)
Q Consensus       159 ~~~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~  199 (244)
                      ...++.||++.|.|. |.||+.+|+.| ..-|++|+..+|+.
T Consensus        17 ~~~~l~~k~~lVTGas~gIG~aia~~L-~~~G~~V~~~~r~~   57 (288)
T 2x9g_A           17 RGSHMEAPAAVVTGAAKRIGRAIAVKL-HQTGYRVVIHYHNS   57 (288)
T ss_dssp             -----CCCEEEETTCSSHHHHHHHHHH-HHHTCEEEEEESSC
T ss_pred             CCcCCCCCEEEEeCCCCHHHHHHHHHH-HHCCCeEEEEeCCc
Confidence            345689999999974 78999999999 68899999999986

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=94.09  E-value=0.046  Score=46.30  Aligned_cols=72  Identities=13%  Similarity=0.220  Sum_probs=46.5

Q ss_pred             CEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCC--CccccccCCHHHHhhhCCEEEE
Q 026023          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       166 ~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      ++|.|.| .|.||+.+++.| ..-|.+|.+.+|++....+. ...+    ...+..  .......+++.++++.+|+|+.
T Consensus        12 ~~ilVtGatG~iG~~l~~~L-~~~g~~V~~l~R~~~~~~~~-~~~l----~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~   85 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGS-LKLGHPTYVFTRPNSSKTTL-LDEF----QSLGAIIVKGELDEHEKLVELMKKVDVVIS   85 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHH-HHTTCCEEEEECTTCSCHHH-HHHH----HHTTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             CeEEEECCCchHHHHHHHHH-HHCCCcEEEEECCCCchhhH-HHHh----hcCCCEEEEecCCCHHHHHHHHcCCCEEEE
Confidence            5799999 599999999998 67899999999986421111 0000    001111  1122223467889999999876


Q ss_pred             e
Q 026023          243 L  243 (244)
Q Consensus       243 ~  243 (244)
                      +
T Consensus        86 ~   86 (318)
T 2r6j_A           86 A   86 (318)
T ss_dssp             C
T ss_pred             C
Confidence            4

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=94.09  E-value=0.11  Score=43.19  Aligned_cols=41  Identities=22%  Similarity=0.199  Sum_probs=35.4

Q ss_pred             ccccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          160 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       160 ~~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ..++.||++.|.|. |.||+.+|+.| ..-|++|+..+|+...
T Consensus        15 ~~~l~~k~vlVTGas~gIG~aia~~l-~~~G~~V~~~~r~~~~   56 (266)
T 4egf_A           15 VLRLDGKRALITGATKGIGADIARAF-AAAGARLVLSGRDVSE   56 (266)
T ss_dssp             GGCCTTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             ccCCCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            34689999999985 68999999999 6889999999998654

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=94.07  E-value=0.077  Score=44.59  Aligned_cols=41  Identities=20%  Similarity=0.118  Sum_probs=35.7

Q ss_pred             ccccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          160 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       160 ~~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ..++.||++.|.|. |.||+.+|+.| ..-|++|+..+|+...
T Consensus        11 ~~~l~gk~vlVTGas~gIG~~~a~~L-~~~G~~V~~~~r~~~~   52 (291)
T 3rd5_A           11 LPSFAQRTVVITGANSGLGAVTAREL-ARRGATVIMAVRDTRK   52 (291)
T ss_dssp             CCCCTTCEEEEECCSSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             ccCCCCCEEEEeCCCChHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            35689999999986 78999999999 6889999999998654

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=94.07  E-value=0.064  Score=46.83  Aligned_cols=37  Identities=16%  Similarity=0.167  Sum_probs=32.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcch
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~  201 (244)
                      .|++|.|+|.|.||...++.+ +.+|+ +|++++++...
T Consensus       190 ~g~~VlV~GaG~vG~~a~qla-k~~Ga~~Vi~~~~~~~~  227 (371)
T 1f8f_A          190 PASSFVTWGAGAVGLSALLAA-KVCGASIIIAVDIVESR  227 (371)
T ss_dssp             TTCEEEEESCSHHHHHHHHHH-HHHTCSEEEEEESCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEECCCHHH
Confidence            578999999999999999995 99999 79999987644

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=94.06  E-value=0.078  Score=42.96  Aligned_cols=39  Identities=15%  Similarity=0.163  Sum_probs=34.3

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ++.|+++.|.|. |.||+.+++.| ..-|++|+..+|+...
T Consensus         4 ~~~~~~vlVTGasggiG~~~a~~l-~~~G~~V~~~~r~~~~   43 (244)
T 1cyd_A            4 NFSGLRALVTGAGKGIGRDTVKAL-HASGAKVVAVTRTNSD   43 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            478999999987 89999999999 6889999999998643

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=94.05  E-value=0.028  Score=47.21  Aligned_cols=74  Identities=11%  Similarity=0.111  Sum_probs=46.5

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCc-c---h-HHHHHHhhhhhhhhcCCCC--CccccccCCHHHHhhh
Q 026023          165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ-A---T-RLEKFVTAYGQFLKANGEQ--PVTWKRASSMDEVLRE  236 (244)
Q Consensus       165 g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~-~---~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ell~~  236 (244)
                      +++|.|.|. |.||+.+++.| ..-|.+|.+.+|++ .   + +..+....    +...+..  .......+++.++++.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L-~~~g~~V~~~~R~~~~~~~~~~~~~~~~~----l~~~~v~~v~~D~~d~~~l~~~~~~   76 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWAS-IKAGNPTYALVRKTITAANPETKEELIDN----YQSLGVILLEGDINDHETLVKAIKQ   76 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHH-HHHTCCEEEEECCSCCSSCHHHHHHHHHH----HHHTTCEEEECCTTCHHHHHHHHTT
T ss_pred             CcEEEEECCCchHHHHHHHHH-HhCCCcEEEEECCCcccCChHHHHHHHHH----HHhCCCEEEEeCCCCHHHHHHHHhC
Confidence            568999995 99999999998 67799999999986 1   1 11110100    0011111  1122223467889999


Q ss_pred             CCEEEEe
Q 026023          237 ADVVCTL  243 (244)
Q Consensus       237 sD~Vvl~  243 (244)
                      +|+|+.+
T Consensus        77 ~d~vi~~   83 (307)
T 2gas_A           77 VDIVICA   83 (307)
T ss_dssp             CSEEEEC
T ss_pred             CCEEEEC
Confidence            9998764

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=94.05  E-value=0.066  Score=46.20  Aligned_cols=72  Identities=22%  Similarity=0.236  Sum_probs=44.8

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCc--EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      .+|+|+|.|.+|..++-.| ..-+.  ++..+|..... .+.....+.... ... ....+.  .+..+.++.||+|++.
T Consensus         6 ~KI~IiGaG~vG~~~a~~l-~~~~~~~el~L~Di~~~~-~~g~~~dl~~~~-~~~-~~~~v~--~~~~~a~~~aDvVii~   79 (318)
T 1ez4_A            6 QKVVLVGDGAVGSSYAFAM-AQQGIAEEFVIVDVVKDR-TKGDALDLEDAQ-AFT-APKKIY--SGEYSDCKDADLVVIT   79 (318)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHHTCCSEEEEECSSHHH-HHHHHHHHHGGG-GGS-CCCEEE--ECCGGGGTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHH-HcCCCCCEEEEEeCCchH-HHHHHHHHHHHH-Hhc-CCeEEE--ECCHHHhCCCCEEEEC
Confidence            5899999999999999987 45565  89999997533 121111111100 001 122222  2446779999999986

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=94.04  E-value=0.06  Score=43.86  Aligned_cols=39  Identities=18%  Similarity=0.109  Sum_probs=33.5

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ++.|+++.|.|. |.||+.+++.| ..-|++|+..+|+...
T Consensus         3 ~~~~k~vlVtGasggiG~~~a~~l-~~~G~~V~~~~r~~~~   42 (251)
T 1zk4_A            3 RLDGKVAIITGGTLGIGLAIATKF-VEEGAKVMITGRHSDV   42 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCcEEEEeCCCChHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            478899999975 79999999999 6789999999998643

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=94.03  E-value=0.11  Score=44.58  Aligned_cols=75  Identities=25%  Similarity=0.270  Sum_probs=45.3

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCCc--EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      ..+|+|+|.|.+|..++-.| ..-|.  +|..+|...... +.....+.... ........+. . +..+.++.||+|++
T Consensus         6 ~~KI~IIGaG~vG~~la~~l-~~~~~~~ei~L~Di~~~~~-~g~~~dl~~~~-~~~~~~~~v~-~-~~~~a~~~aDvVvi   80 (317)
T 3d0o_A            6 GNKVVLIGNGAVGSSYAFSL-VNQSIVDELVIIDLDTEKV-RGDVMDLKHAT-PYSPTTVRVK-A-GEYSDCHDADLVVI   80 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHH-HHHCSCSEEEEECSCHHHH-HHHHHHHHHHG-GGSSSCCEEE-E-CCGGGGTTCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHH-HhCCCCCEEEEEeCChhHh-hhhhhhHHhhh-hhcCCCeEEE-e-CCHHHhCCCCEEEE
Confidence            46899999999999999988 44464  899999875321 11111110000 0000112222 1 34677999999998


Q ss_pred             eC
Q 026023          243 LC  244 (244)
Q Consensus       243 ~~  244 (244)
                      +.
T Consensus        81 ~a   82 (317)
T 3d0o_A           81 CA   82 (317)
T ss_dssp             CC
T ss_pred             CC
Confidence            63

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=94.03  E-value=0.064  Score=50.16  Aligned_cols=37  Identities=22%  Similarity=0.462  Sum_probs=32.8

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCC
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY  198 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~  198 (244)
                      ..|.+++|.|+|.|.+|..+|+.| -..|. ++..+|..
T Consensus       323 ~kL~~~kVLIVGaGGLGs~va~~L-a~aGVG~ItLvD~D  360 (598)
T 3vh1_A          323 DIIKNTKVLLLGAGTLGCYVSRAL-IAWGVRKITFVDNG  360 (598)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHH-HTTTCCEEEEECCS
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHH-HHcCCCEEEEECCC
Confidence            468999999999999999999999 58898 78888654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	244
d1gdha2	129	c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrog	1e-15
d1dxya2	131	c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproa	3e-15
d1ygya2	130	c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehy	5e-14
d1gdha1	191	c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyp	6e-14
d1j4aa2	134	c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogen	3e-12
d1mx3a2	133	c.23.12.1 (A:27-125,A:319-352) Transcription corep	6e-11
d2naca2	186	c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenas	1e-08
d1mx3a1	193	c.2.1.4 (A:126-318) Transcription corepressor CtbP	4e-08
d1sc6a2	132	c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate deh	7e-08
d1ygya1	184	c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase	7e-07
d1qp8a2	121	c.23.12.1 (A:1-82,A:264-302) Putative formate dehy	2e-06
d1j4aa1	197	c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lacto	1e-05
d2naca1	188	c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudom	3e-05
d1qp8a1	181	c.2.1.4 (A:83-263) Putative formate dehydrogenase	3e-05
d1dxya1	199	c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydro	1e-04
d1sc6a1	188	c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase	2e-04
d1b7go1	178	c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosp	0.003

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 129

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score = 68.9 bits (168), Expect = 1e-15
 Identities = 24/128 (18%), Positives = 53/128 (41%), Gaps = 5/128 (3%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           K +++ T P+P    +     +   V         ++++++I       D ++  L E  
Sbjct: 1   KKKILITWPLP-EAAMARA-RESYDVIA-HGDDPKITIDEMIETAKS-VDALLITLNEKC 56

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
            + +   +     K  S  ++G++++D++A    GI VGN P   T+   ++A   +   
Sbjct: 57  RKEVIDRIPE-NIKCISTYSIGFDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLI 115

Query: 135 ARRIVEAD 142
                 AD
Sbjct: 116 DALFGGAD 123

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 131

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 68.2 bits (166), Expect = 3e-15
 Identities = 19/131 (14%), Positives = 40/131 (30%), Gaps = 5/131 (3%)

Query: 18  VVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGET 77
               +      +     +    +E  T+       E+ +       DG+    T  +   
Sbjct: 5   AYGARVDEIQYFKQWAKDTGNTLEYHTEFLD----ENTVEWAKG-FDGINSLQTTPYAAG 59

Query: 78  LFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARR 137
           +F  +   G K  +   VG +N+D+ A  +YGI + N P         +           
Sbjct: 60  VFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDF 119

Query: 138 IVEADEFMRAG 148
           + + +      
Sbjct: 120 LTKGETSTEVT 130

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 130

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 64.8 bits (157), Expect = 5e-14
 Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 7/120 (5%)

Query: 33  LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN 92
            +     V            + ++A + +  D ++ +        + AA  +   K  + 
Sbjct: 18  ALGDQVEVRWVDG----PDRDKLLAAVPE-ADALLVRSATTVDAEVLAAAPK--LKIVAR 70

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152
             VG +NVDV+AA   G+ V N P   +   A+  A   +A + R+  A EF+   +  G
Sbjct: 71  AGVGLDNVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAGEFVPDAVNVG 130

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 191

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score = 66.1 bits (160), Expect = 6e-14
 Identities = 31/78 (39%), Positives = 46/78 (58%), Gaps = 1/78 (1%)

Query: 119 LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGS 178
           +T  TAE+A  L L +ARR  E ++ +R   + GW P   VG  L  +T+G+ G G IG 
Sbjct: 1   VTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQ 60

Query: 179 AYARMMVEGFKMNLIYYD 196
           A A+   +GF M++ Y+D
Sbjct: 61  ALAKRA-QGFDMDIDYFD 77

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 134

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 59.9 bits (145), Expect = 3e-12
 Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 6/109 (5%)

Query: 30  INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKA 89
           +    +    VE+      +L+  + +AL     DGV+     D+      AL+  G   
Sbjct: 16  LKEWEDAHKDVEV-EYTDKLLT-PETVALAKG-ADGVVVYQQLDYIAETLQALADNGITK 72

Query: 90  FSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRI 138
            S   VG +N+D+  A + G  + N P     +    A    +  A   
Sbjct: 73  MSLRNVGVDNIDMAKAKELGFQITNVPVY---SYTTHAVRNMVVKAFDN 118

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 133

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score = 56.5 bits (136), Expect = 6e-11
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 13/132 (9%)

Query: 24  MPGTRWINLLIEQDCRVEICTQKK-------TILSVEDIIALIGDKCDGVIGQLTEDWGE 76
           MP    + LL  +DC VE+   K           S ++I   + ++  G +   T     
Sbjct: 1   MP---LVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTR 57

Query: 77  TLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAAR 136
                      +    +  G++N+D+ +A   GIAV N P     +  + +  +   AAR
Sbjct: 58  EDLEKFKAL--RIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVYS-EQASIEMREEAAR 114

Query: 137 RIVEADEFMRAG 148
            I  A       
Sbjct: 115 EIRRAITGRIPD 126

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score = 50.7 bits (121), Expect = 1e-08
 Identities = 11/71 (15%), Positives = 21/71 (29%), Gaps = 8/71 (11%)

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELA--------ASLSLAAARRIV 139
           K      +G ++VD+ +A    + V       + T    A                R I 
Sbjct: 115 KLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSTTLTAQARYAAGTREILECFFEGRPIR 174

Query: 140 EADEFMRAGLY 150
           +    ++ G  
Sbjct: 175 DEYLIVQGGAL 185

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 193

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 4e-08
 Identities = 21/98 (21%), Positives = 31/98 (31%), Gaps = 4/98 (4%)

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLY----DGWLPNLFVGNLLKGQTVGVIGAGRI 176
           E TA+      L   RR     + +R G      +           ++G+T+G+IG GR+
Sbjct: 1   EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRV 60

Query: 177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
           G A A          L Y                   L
Sbjct: 61  GQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTL 98

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 47.7 bits (113), Expect = 7e-08
 Identities = 24/108 (22%), Positives = 34/108 (31%), Gaps = 3/108 (2%)

Query: 41  EICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNV 100
                 K  L  E +   I D    +   L      T     +     A    A+G N V
Sbjct: 27  TNIEFHKGALDDEQLKESIRD-AHFIG--LRSRTHLTEDVINAAEKLVAIGAFAIGTNQV 83

Query: 101 DVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAG 148
           D++AA K GI V N P   T+   E           +  +    + A 
Sbjct: 84  DLDAAAKRGIPVFNAPFSSTQEAQENIGLEVAGKLIKYSDNGSTLSAV 131

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 46.1 bits (108), Expect = 7e-07
 Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 20/122 (16%)

Query: 120 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSA 179
             + AE A +L LAA+R+I  AD  +R      W  + F G  + G+TVGV+G GRIG  
Sbjct: 2   IHSAAEHALALLLAASRQIPAADASLREH---TWKRSSFSGTEIFGKTVGVVGLGRIGQL 58

Query: 180 YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239
            A+ +   F   ++ YD Y +      +                     S+D++L  AD 
Sbjct: 59  VAQRIAA-FGAYVVAYDPYVSPARAAQLGIE----------------LLSLDDLLARADF 101

Query: 240 VC 241
           + 
Sbjct: 102 IS 103

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 121

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 43.8 bits (103), Expect = 2e-06
 Identities = 8/96 (8%), Positives = 19/96 (19%), Gaps = 31/96 (32%)

Query: 87  GKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMR 146
            K    +  G +++   +     + V    G        +   + + A R          
Sbjct: 51  LKFIQVVTAGLDHLPWESIPP-HVTVAGNAGSNGYGNERVWRQMVMEAVR---------- 99

Query: 147 AGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYAR 182
                                +     G      A+
Sbjct: 100 --------------------NLITYATGGRPRNIAK 115

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 197

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 42.5 bits (98), Expect = 1e-05
 Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 3/71 (4%)

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
              AE AA  +    R+    DE +             +G  ++ Q VGV+G G IG  +
Sbjct: 2   NAIAEHAAIQAARILRQDKAMDEKVARH---DLRWAPTIGREVRDQVVGVVGTGHIGQVF 58

Query: 181 ARMMVEGFKMN 191
            ++M       
Sbjct: 59  MQIMEGFGAKV 69

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score = 41.5 bits (96), Expect = 3e-05
 Identities = 26/123 (21%), Positives = 50/123 (40%), Gaps = 16/123 (13%)

Query: 122 TTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYA 181
           + AE    + L+  R  + + E+ R G ++     +     L+   VG + AGRIG A  
Sbjct: 2   SVAEHVVMMILSLVRNYLPSHEWARKGGWN-IADCVSHAYDLEAMHVGTVAAGRIGLAVL 60

Query: 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC 241
           R +   F ++L Y D ++                 + E+ +     ++ +++    DVV 
Sbjct: 61  RRL-APFDVHLHYTDRHRLPE--------------SVEKELNLTWHATREDMYPVCDVVT 105

Query: 242 TLC 244
             C
Sbjct: 106 LNC 108

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 41.3 bits (95), Expect = 3e-05
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP 155
           +  AE A +L LA  +RI++  E M+ G Y   + 
Sbjct: 2   DAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVE 36

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 199

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 39.8 bits (91), Expect = 1e-04
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 120 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSA 179
               AE A + +L   R + +    ++AG Y+      F+G  L  QTVGV+G G IG  
Sbjct: 2   PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGT--FIGKELGQQTVGVMGTGHIGQV 59

Query: 180 YARMMVEGFKM 190
             ++       
Sbjct: 60  AIKLFKGFGAK 70

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 10/39 (25%), Positives = 15/39 (38%)

Query: 120 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLF 158
           T + AEL     L   R + EA+     G+ +      F
Sbjct: 2   TRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSF 40

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 178

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 35.3 bits (81), Expect = 0.003
 Identities = 13/79 (16%), Positives = 30/79 (37%), Gaps = 5/79 (6%)

Query: 168 VGVIGAGRIGSAYARMMVEGFKMNLIY-----YDLYQATRLEKFVTAYGQFLKANGEQPV 222
           V V G G IG   A  +++   M L+       +        + +  Y         +  
Sbjct: 4   VAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEES 63

Query: 223 TWKRASSMDEVLREADVVC 241
               A +++++++ +D+V 
Sbjct: 64  GIPVAGTVEDLIKTSDIVV 82

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	244
d1ygya2	130	Phosphoglycerate dehydrogenase {Mycobacterium tube	99.94
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	99.92
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	99.92
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	99.92
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	99.91
d1qp8a2	121	Putative formate dehydrogenase {Archaeon Pyrobacul	99.91
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	99.9
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	99.9
d1sc6a2	132	Phosphoglycerate dehydrogenase {Escherichia coli [	99.89
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	99.89
d1dxya2	131	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	99.89
d1gdha2	129	D-glycerate dehydrogenase {Hyphomicrobium methylov	99.88
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	99.88
d2naca2	186	Formate dehydrogenase {Pseudomonas sp., strain 101	99.85
d1mx3a2	133	Transcription corepressor CtbP {Human (Homo sapien	99.84
d1j4aa2	134	D-lactate dehydrogenase {Lactobacillus helveticus	99.83
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	99.26
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	98.77
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	98.49
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	98.35
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	98.32
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	98.31
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	98.29
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	98.28
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.28
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	98.18
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	98.06
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	98.05
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.97
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.94
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.89
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.86
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	97.74
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	97.7
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.59
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	97.51
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.48
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	97.41
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	97.4
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	97.35
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	97.34
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	97.3
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	97.27
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.25
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	97.24
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.24
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.22
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.16
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	97.15
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	97.14
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	97.11
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	97.1
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.08
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	97.04
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	96.95
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	96.91
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	96.84
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	96.84
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	96.83
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	96.82
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	96.76
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.73
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.73
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.72
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	96.72
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.69
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	96.66
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	96.65
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.65
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	96.64
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.63
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	96.63
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.61
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	96.6
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	96.56
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	96.56
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.54
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	96.54
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	96.51
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.51
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	96.49
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.44
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.44
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	96.43
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	96.42
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	96.41
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	96.39
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	96.36
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	96.31
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	96.3
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	96.2
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.2
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	96.15
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	96.13
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	96.06
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.05
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.03
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.97
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	95.94
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	95.92
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	95.89
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	95.89
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	95.89
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.84
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	95.82
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	95.82
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	95.8
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	95.76
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.67
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	95.65
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	95.57
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.57
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	95.56
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	95.55
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	95.53
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	95.4
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	95.39
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.39
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.35
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	95.34
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	95.31
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	95.3
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	95.25
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	95.21
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	95.19
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	95.19
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	95.19
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	95.19
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	95.17
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	95.12
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	95.11
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	95.1
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	95.1
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	95.08
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	95.06
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	95.05
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	95.02
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	95.02
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	94.99
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	94.92
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	94.87
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	94.86
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	94.85
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	94.83
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	94.83
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	94.81
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	94.71
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.69
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	94.64
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	94.62
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	94.5
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	94.49
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	94.48
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	94.44
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	94.43
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	94.39
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	94.35
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	94.35
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	94.31
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	94.27
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	94.26
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	94.23
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	94.15
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	94.12
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	94.11
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	94.11
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	94.08
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.0
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	93.89
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	93.85
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	93.85
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	93.81
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	93.79
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	93.79
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	93.79
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	93.76
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	93.75
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	93.73
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	93.7
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	93.64
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	93.61
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	93.51
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	93.46
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	93.42
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	93.4
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	93.38
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	93.38
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	93.35
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	93.27
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	93.18
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	93.17
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	93.11
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	93.04
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	93.0
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	92.99
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	92.95
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	92.93
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.92
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	92.81
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	92.79
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	92.78
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	92.69
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.64
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.64
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	92.6
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	92.55
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	92.54
d7reqa2	168	Methylmalonyl-CoA mutase alpha subunit, C-terminal	92.51
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.49
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	92.31
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	92.29
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	92.13
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	92.11
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	92.11
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	92.06
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.01
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	91.94
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.92
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	91.89
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	91.72
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	91.65
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	91.63
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	91.63
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	91.6
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	91.54
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	91.48
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	91.46
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.37
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	91.35
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.31
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	91.1
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	91.1
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	90.96
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	90.9
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	90.79
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	90.74
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	90.66
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	90.6
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	90.6
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	90.59
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	90.55
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	90.45
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	90.38
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	90.23
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	90.04
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	90.0
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	89.83
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	89.8
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	89.52
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	89.52
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.41
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	89.33
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	89.1
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	89.09
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	89.05
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	88.78
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	88.68
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	88.5
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	88.41
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	88.32
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	88.1
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	88.03
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	88.0
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	87.94
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	87.92
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	87.57
d1tuga1	310	Aspartate carbamoyltransferase catalytic subunit {	87.39
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	87.31
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	87.31
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	87.29
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	87.13
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	87.04
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	87.02
d1wd7a_	254	Probable uroporphyrinogen-III synthase {Thermus th	86.98
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	86.9
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	86.46
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	86.16
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	85.68
d1jr2a_	260	Uroporphyrinogen III synthase (U3S, HemD) {Human (	85.11
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	84.83
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	84.3
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	84.19
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	83.96
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	83.94
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	83.57
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	83.15
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	83.13
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	83.07
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	82.64
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	82.48
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	82.13
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	82.08
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	81.63
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	81.63
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	81.63
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	81.36
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	81.3
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	81.0
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	80.93
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	80.71
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	80.51
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	80.44
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	80.12

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.94  E-value=2.5e-27  Score=180.45  Aligned_cols=129  Identities=22%  Similarity=0.274  Sum_probs=115.0

Q ss_pred             CCeEEEEeCCCCchHHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEc
Q 026023           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (244)
Q Consensus        14 ~~~~ilv~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~   93 (244)
                      +|+|||++.++++. ..+.|++. +++++...    .+++++.+.+++ +|++++....++++++++.+|+|  |+|++.
T Consensus         1 sMpkvli~~~~~~~-~~~~L~~~-~~v~~~~~----~~~~el~~~~~~-~d~ii~~~~~~i~~~~l~~~p~L--k~I~~~   71 (130)
T d1ygya2           1 SLPVVLIADKLAPS-TVAALGDQ-VEVRWVDG----PDRDKLLAAVPE-ADALLVRSATTVDAEVLAAAPKL--KIVARA   71 (130)
T ss_dssp             CCCEEEECSSCCGG-GGTTSCSS-SEEEECCT----TSHHHHHHHGGG-CSEEEECSSSCBCHHHHHTCTTC--CEEEES
T ss_pred             CCCEEEEECCCCHH-HHHHHhCC-cEEEECCC----CCHHHHHHHcCC-CEEEEEcCcccchHHHHhhcccc--eEEeee
Confidence            48899999998876 46777665 68876543    478999999985 99999877778999999999999  999999


Q ss_pred             ccCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCC
Q 026023           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD  151 (244)
Q Consensus        94 ~aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~  151 (244)
                      |+|+||||+++|+++||.|+|+|++++.+|||++++++|++.|++..+.+.+|+|.|-
T Consensus        72 g~G~d~IDl~~~~~~gI~V~n~p~~~~~~VAE~~~~l~L~l~R~i~~a~~~vr~g~~~  129 (130)
T d1ygya2          72 GVGLDNVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAGEFVPDAVNV  129 (130)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECCTTSSCBHHHHHHHHHHHHHHHHHHHTTCCCTTBCSC
T ss_pred             cccccchhHHHHHHCCceEEecCCCCcHHHHHHHHHHHHHHHhhHHHHhhhcccCccC
Confidence            9999999999999999999999999999999999999999999999988888888763

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=99.92  E-value=5.5e-25  Score=177.77  Aligned_cols=110  Identities=32%  Similarity=0.501  Sum_probs=95.4

Q ss_pred             CcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023          120 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (244)
Q Consensus       120 ~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~  199 (244)
                      +.+|||++++++|++.|++.++++.+++|.|.+|.+....+.++.|+|+||+|+|+||+++|+++ ++|||+|++||++.
T Consensus         2 t~AvAE~ai~liL~~~R~i~~~~~~~r~g~w~~~~~~~~~~~~l~g~tvgIiG~G~IG~~va~~l-~~fg~~v~~~d~~~   80 (191)
T d1gdha1           2 TVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRA-QGFDMDIDYFDTHR   80 (191)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHH-HTTTCEEEEECSSC
T ss_pred             CHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCccccccceecccceEEeecccchHHHHHHH-Hhhccccccccccc
Confidence            46899999999999999999999999999999888776678999999999999999999999997 99999999999987


Q ss_pred             chHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          200 ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      ........              ......++|++++++||+|++||
T Consensus        81 ~~~~~~~~--------------~~~~~~~~l~~ll~~sD~v~l~~  111 (191)
T d1gdha1          81 ASSSDEAS--------------YQATFHDSLDSLLSVSQFFSLNA  111 (191)
T ss_dssp             CCHHHHHH--------------HTCEECSSHHHHHHHCSEEEECC
T ss_pred             cccchhhc--------------ccccccCCHHHHHhhCCeEEecC
Confidence            64322211              11335579999999999999997

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=99.92  E-value=2.9e-25  Score=180.16  Aligned_cols=103  Identities=32%  Similarity=0.537  Sum_probs=90.2

Q ss_pred             cchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       121 ~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      ++||||+++++|++.|+++.+++.+++|+|. |.+  ..+++|.|+||||+|+|+||+++|++| ++|||+|++||++.+
T Consensus         2 ~aVAE~~l~~~l~l~r~~~~~~~~~~~~~~~-w~~--~~g~el~gk~vgIiG~G~IG~~va~~l-~~fg~~V~~~d~~~~   77 (197)
T d1j4aa1           2 NAIAEHAAIQAARILRQDKAMDEKVARHDLR-WAP--TIGREVRDQVVGVVGTGHIGQVFMQIM-EGFGAKVITYDIFRN   77 (197)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHTTBCC-CTT--CCBCCGGGSEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSCC
T ss_pred             CHHHHHHHHHHHHHHhCcHHHHHHHHhCCCC-cCC--CcCccccCCeEEEecccccchhHHHhH-hhhcccccccCcccc
Confidence            6899999999999999999999999999986 655  357899999999999999999999997 999999999999876


Q ss_pred             hHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          201 TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +..+.                 ...+.++|++++++||+|++||
T Consensus        78 ~~~~~-----------------~~~~~~~l~~~l~~sDii~~~~  104 (197)
T d1j4aa1          78 PELEK-----------------KGYYVDSLDDLYKQADVISLHV  104 (197)
T ss_dssp             HHHHH-----------------TTCBCSCHHHHHHHCSEEEECS
T ss_pred             ccccc-----------------ceeeeccccccccccccccccC
Confidence            53222                 1224579999999999999997

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=99.92  E-value=2.8e-25  Score=179.78  Aligned_cols=108  Identities=28%  Similarity=0.435  Sum_probs=91.1

Q ss_pred             cchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCC----CcccccccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEc
Q 026023          121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP----NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD  196 (244)
Q Consensus       121 ~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~----~~~~~~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~  196 (244)
                      ++|||++++++|++.|++..+++.+++|.|.++..    ....+.+|.|+||||+|+|+||+++|+++ ++|||+|++||
T Consensus         1 e~VAE~ai~liL~l~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~~eL~gktvgIiG~G~IG~~va~~l-~~fg~~v~~~d   79 (193)
T d1mx3a1           1 EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRA-KAFGFNVLFYD   79 (193)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCSHHHHHHHHHH-HTTTCEEEEEC
T ss_pred             CcHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccccccccCceeeeCceEEEeccccccccceeee-eccccceeecc
Confidence            58999999999999999999999999999975321    12346889999999999999999999997 99999999999


Q ss_pred             CCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          197 LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      |+........               .++...++|++++++||+|++||
T Consensus        80 ~~~~~~~~~~---------------~~~~~~~~l~~ll~~sD~i~~~~  112 (193)
T d1mx3a1          80 PYLSDGVERA---------------LGLQRVSTLQDLLFHSDCVTLHC  112 (193)
T ss_dssp             TTSCTTHHHH---------------HTCEECSSHHHHHHHCSEEEECC
T ss_pred             Ccccccchhh---------------hccccccchhhccccCCEEEEee
Confidence            9876533221               12345679999999999999997

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.91  E-value=1.1e-24  Score=175.01  Aligned_cols=106  Identities=32%  Similarity=0.443  Sum_probs=91.0

Q ss_pred             CCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCC
Q 026023          119 LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (244)
Q Consensus       119 ~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~  198 (244)
                      |+.+||||+++++|++.|+++.+++.++++.|.+   ....+.++.|+++||+|+|+||+++|+++ ++|||+|++|||+
T Consensus         1 N~~sVAE~~~~liL~~~R~i~~~~~~~~~~~W~~---~~~~~~~l~~k~vgiiG~G~IG~~va~~~-~~fg~~v~~~d~~   76 (184)
T d1ygya1           1 NIHSAAEHALALLLAASRQIPAADASLREHTWKR---SSFSGTEIFGKTVGVVGLGRIGQLVAQRI-AAFGAYVVAYDPY   76 (184)
T ss_dssp             SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCG---GGCCBCCCTTCEEEEECCSHHHHHHHHHH-HTTTCEEEEECTT
T ss_pred             CchHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCc---cccccccccceeeeeccccchhHHHHHHh-hhccceEEeecCC
Confidence            5679999999999999999999999999999863   22456889999999999999999999997 9999999999999


Q ss_pred             cchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          199 QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      ..+..+...                .....+++|++++||+|++||
T Consensus        77 ~~~~~~~~~----------------~~~~~~l~ell~~sDiv~~~~  106 (184)
T d1ygya1          77 VSPARAAQL----------------GIELLSLDDLLARADFISVHL  106 (184)
T ss_dssp             SCHHHHHHH----------------TCEECCHHHHHHHCSEEEECC
T ss_pred             CChhHHhhc----------------CceeccHHHHHhhCCEEEEcC
Confidence            876432211                123469999999999999997

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.91  E-value=9.2e-27  Score=174.92  Aligned_cols=121  Identities=11%  Similarity=0.104  Sum_probs=102.6

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEccc
Q 026023           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (244)
Q Consensus        16 ~~ilv~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~a   95 (244)
                      |||+++.+++++ ..+.+++. +++..  ..+           +. ++|+++++   +++++.++++|+|  |||++.|+
T Consensus         1 Mki~v~~~lp~e-~~e~L~~~-~~v~~--~~d-----------~~-~~d~~l~~---~~~~~~l~~~~~L--k~i~~~~a   59 (121)
T d1qp8a2           1 MELYVNFELPPE-AEEELRKY-FKIVR--GGD-----------LG-NVEAALVS---RITAEELAKMPRL--KFIQVVTA   59 (121)
T ss_dssp             CEEECCSCCCHH-HHHHHHTT-CEEEC--SSC-----------CT-TBCCCCBS---CCCHHHHHHCTTC--CCEEBSSS
T ss_pred             CEEEEeCCCCHH-HHHHhhhc-ceEee--ccc-----------cc-ccceeeee---ccCHHHHhcCCCc--eEEEeccc
Confidence            789999999876 56777765 45542  221           12 48888776   6899999999999  99999999


Q ss_pred             CCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCCh
Q 026023           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR  175 (244)
Q Consensus        96 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~  175 (244)
                      |+||+|.+.+. +||.|+|++|+|+.+||||+++++|++.|+                              +||+|+|+
T Consensus        60 G~D~i~~~~~~-~~i~v~n~~g~~~~~vae~~~~~il~~~r~------------------------------l~i~G~G~  108 (121)
T d1qp8a2          60 GLDHLPWESIP-PHVTVAGNAGSNGYGNERVWRQMVMEAVRN------------------------------LITYATGG  108 (121)
T ss_dssp             CCTTSCCTTSC-TTSCEECCCSSSSSSCHHHHHHHHHHHHHH------------------------------HHHHHTTS
T ss_pred             CcCCCCHHHhc-cCeEEEECCCCChHHHHHHHHHHHHHhcCC------------------------------EEEEcCCH
Confidence            99999999885 699999999999999999999999999873                              58999999


Q ss_pred             HHHHHHHHHhccCC
Q 026023          176 IGSAYARMMVEGFK  189 (244)
Q Consensus       176 IG~~vA~~la~afG  189 (244)
                      ||+++|+|+ ++||
T Consensus       109 iG~~iA~r~-~a~G  121 (121)
T d1qp8a2         109 RPRNIAKRE-DYIG  121 (121)
T ss_dssp             CCSCBCCGG-GTC-
T ss_pred             HHHHHHHHH-HhcC
Confidence            999999995 9998

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.90  E-value=1.5e-24  Score=176.38  Aligned_cols=104  Identities=28%  Similarity=0.424  Sum_probs=89.0

Q ss_pred             CcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023          120 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (244)
Q Consensus       120 ~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~  199 (244)
                      +.+||||+++++|++.|++..+.+.+++|.|.++..  +.+++|.|+||||+|+|+||+++|++| ++|||+|++|||+.
T Consensus         2 p~aVAE~~l~~iL~l~R~~~~~~~~~~~g~w~~~~~--~~~~~l~~ktvgIiG~G~IG~~va~~l-~~fg~~v~~~d~~~   78 (199)
T d1dxya1           2 PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGT--FIGKELGQQTVGVMGTGHIGQVAIKLF-KGFGAKVIAYDPYP   78 (199)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTC--CCCCCGGGSEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSC
T ss_pred             ChHHHHHHHHHHHHHHhCHHHHHHHHHhCCCCcccC--cccccccceeeeeeecccccccccccc-cccceeeeccCCcc
Confidence            468999999999999999999999999999964222  356899999999999999999999997 99999999999987


Q ss_pred             chHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          200 ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      ....+                  ......++++++++||+|++||
T Consensus        79 ~~~~~------------------~~~~~~~l~~l~~~~D~v~~~~  105 (199)
T d1dxya1          79 MKGDH------------------PDFDYVSLEDLFKQSDVIDLHV  105 (199)
T ss_dssp             CSSCC------------------TTCEECCHHHHHHHCSEEEECC
T ss_pred             chhhh------------------cchhHHHHHHHHHhcccceeee
Confidence            54211                  1123468999999999999997

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.90  E-value=5.8e-24  Score=170.33  Aligned_cols=100  Identities=27%  Similarity=0.436  Sum_probs=86.9

Q ss_pred             CcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023          120 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (244)
Q Consensus       120 ~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~  199 (244)
                      |++||||+++++|++.|++..+.+.+++|.|.+..    ...++.|+||||+|+|+||+.+|+++ ++|||+|++|||++
T Consensus         1 A~aVAE~~~~liL~~~R~i~~~~~~~~~~~w~~~~----~~~~l~gk~vgIiG~G~IG~~va~~l-~~~g~~v~~~d~~~   75 (181)
T d1qp8a1           1 ADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDV----EIPLIQGEKVAVLGLGEIGTRVGKIL-AALGAQVRGFSRTP   75 (181)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCS----CCCCCTTCEEEEESCSTHHHHHHHHH-HHTTCEEEEECSSC
T ss_pred             CchHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCC----CCCcccCceEEEeccccccccceeee-eccccccccccccc
Confidence            47899999999999999999999999999996432    22469999999999999999999997 99999999999987


Q ss_pred             chHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          200 ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      ++..                    ....++|+|++++||+|++||
T Consensus        76 ~~~~--------------------~~~~~~l~ell~~sDiv~~~~  100 (181)
T d1qp8a1          76 KEGP--------------------WRFTNSLEEALREARAAVCAL  100 (181)
T ss_dssp             CCSS--------------------SCCBSCSHHHHTTCSEEEECC
T ss_pred             cccc--------------------eeeeechhhhhhccchhhccc
Confidence            6410                    123468999999999999997

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=2e-23  Score=158.76  Aligned_cols=125  Identities=21%  Similarity=0.138  Sum_probs=103.2

Q ss_pred             CCCeEEEEeCCCCchHHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEE
Q 026023           13 NGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN   92 (244)
Q Consensus        13 ~~~~~ilv~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~   92 (244)
                      ..+||||++.++++. .++.|++.++.+.....  ...+++++.+.+.+ +|++++.+..++++++++++|+|  |+|++
T Consensus         2 k~kmKILv~d~i~~~-a~~~L~~~g~~~v~~~~--~~~~~~~l~~~~~~-~d~ii~~~~~~i~~~~i~~~p~L--k~I~~   75 (132)
T d1sc6a2           2 KDKIKFLLVEGVHQK-ALESLRAAGYTNIEFHK--GALDDEQLKESIRD-AHFIGLRSRTHLTEDVINAAEKL--VAIGA   75 (132)
T ss_dssp             CSSCCEEECSCCCHH-HHHHHHHTTCCCEEECS--SCCCHHHHHHHTTS-CSEEEECSSCCBCHHHHHHCSSC--CEEEE
T ss_pred             CCCCEEEEECCCCHH-HHHHHHhCCCEEEEeCC--CCCCHHHHHHhhcC-CcEEEEecccccChhhhhccccc--eeEEE
Confidence            368999999999876 57889888765433322  24689999999995 99998877778999999999999  99999


Q ss_pred             cccCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHH
Q 026023           93 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFM  145 (244)
Q Consensus        93 ~~aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~  145 (244)
                      +|+|+||||+++|+++||.|+|+|++++.+|||+++++++  .|.....+...
T Consensus        76 ~gvG~D~IDl~aa~~~gI~V~ntp~~~~~svAe~~~lml~--~~~~~~~d~~~  126 (132)
T d1sc6a2          76 FAIGTNQVDLDAAAKRGIPVFNAPFSSTQEAQENIGLEVA--GKLIKYSDNGS  126 (132)
T ss_dssp             CSSCCTTBCHHHHHHTTCCEECCTTTCSHHHHHHHHHHHH--HHHHHHHHHCC
T ss_pred             ecccccccCHHHHHhCCCEEEECCCCchhHHHHHHHHHHH--HHhhHHHhCcC
Confidence            9999999999999999999999999999999998765554  45544444433

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=1.3e-23  Score=169.32  Aligned_cols=104  Identities=24%  Similarity=0.325  Sum_probs=88.1

Q ss_pred             CCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCC
Q 026023          119 LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (244)
Q Consensus       119 ~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~  198 (244)
                      |+++||||+++++|++.|+++.+++.++++.|.++.   ..+.++.|++|||+|+|+||+++|+++ ++|||+|++||++
T Consensus         1 Na~aVAE~~l~~il~l~R~~~~~~~~~~~~~w~~~~---~~~~~l~~~~vgiiG~G~IG~~va~~l-~~fg~~v~~~d~~   76 (188)
T d1sc6a1           1 NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLA---AGSFEARGKKLGIIGYGHIGTQLGILA-ESLGMYVYFYDIE   76 (188)
T ss_dssp             THHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC--------CCCSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSS
T ss_pred             CCHHHHHHHHHHHHHHHhChHHHHHHHHhCCCcccc---cccccccceEEEEeecccchhhhhhhc-ccccceEeecccc
Confidence            678999999999999999999999999999987533   245789999999999999999999997 9999999999998


Q ss_pred             cchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          199 QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      .+...                  .......+|+|++++||+|++||
T Consensus        77 ~~~~~------------------~~~~~~~~l~ell~~sDii~i~~  104 (188)
T d1sc6a1          77 NKLPL------------------GNATQVQHLSDLLNMSDVVSLHV  104 (188)
T ss_dssp             CCCCC------------------TTCEECSCHHHHHHHCSEEEECC
T ss_pred             ccchh------------------hhhhhhhhHHHHHhhccceeecc
Confidence            65421                  11234568999999999999997

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.89  E-value=1.4e-23  Score=159.75  Aligned_cols=124  Identities=15%  Similarity=0.225  Sum_probs=99.1

Q ss_pred             eEEEEeCCCCc-hHHHHHH-HhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEc
Q 026023           16 YRVVSTKPMPG-TRWINLL-IEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (244)
Q Consensus        16 ~~ilv~~~~~~-~~~~~~l-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~   93 (244)
                      |||++....+. .++++.+ ++.++++.+....    ..++..+.++ ++|++++....++++++++++|++++|+|++.
T Consensus         1 MKIl~~~~~~~e~~~l~~~~~~~~~~v~~~~~~----~~~~~~~~~~-~~d~ii~~~~~~~~~~vl~~l~~~~Lk~I~~~   75 (131)
T d1dxya2           1 MKIIAYGARVDEIQYFKQWAKDTGNTLEYHTEF----LDENTVEWAK-GFDGINSLQTTPYAAGVFEKMHAYGIKFLTIR   75 (131)
T ss_dssp             CEEEECSCCTTTHHHHHHHHHHHCCEEEECSSC----CCTTGGGGGT-TCSEEEECCSSCBCHHHHHHHHHTTCCEEEES
T ss_pred             CEEEEEecCcCcHHHHHHHHHHcCeEEEEcCCC----CCHHHHHHhc-CCCEEEEecCCCCCHHHHhhcccCCeEEEEEc
Confidence            67888653332 3345555 3446777664432    2356666776 59999887778899999999986666999999


Q ss_pred             ccCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHH
Q 026023           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEF  144 (244)
Q Consensus        94 ~aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~  144 (244)
                      |+|+||||+++|+++||+|+|+|++++.+|||++++++|++.|++.+..+.
T Consensus        76 ~vG~d~ID~~~a~~~gI~V~n~P~~~~~aVAE~~~~~~l~l~R~l~~~~~~  126 (131)
T d1dxya2          76 NVGTDNIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDFLTKGETS  126 (131)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHHHHHHSCCT
T ss_pred             ccccccccccccccceEEEEeCCCCCchhHHHHHHHHHHHHHcchHHHHhh
Confidence            999999999999999999999999999999999999999999998766543

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=99.88  E-value=1.9e-22  Score=152.88  Aligned_cols=114  Identities=20%  Similarity=0.358  Sum_probs=97.1

Q ss_pred             CeEEEEeCCCCchHHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhh-ccCCcEEEEc
Q 026023           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALS-RAGGKAFSNM   93 (244)
Q Consensus        15 ~~~ilv~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p-~l~~k~I~~~   93 (244)
                      ++|||++.+++++ .++.+++. +++.... .+...+.+|+.+.+++ +|++++....++++++++++| +|  |+|++.
T Consensus         1 K~kVlit~~~~~~-~~~~l~~~-~~v~~~~-~~~~~s~~el~~~~~~-~d~ii~~~~~~i~~~~l~~~~~~L--K~I~~~   74 (129)
T d1gdha2           1 KKKILITWPLPEA-AMARARES-YDVIAHG-DDPKITIDEMIETAKS-VDALLITLNEKCRKEVIDRIPENI--KCISTY   74 (129)
T ss_dssp             CCEEEESSCCCHH-HHHHHHTT-SEEEECC-STTCCCHHHHHHHHTT-CSEEEEETTSCBCHHHHHHSCTTC--CEEEEE
T ss_pred             CCEEEEeCCCCHH-HHHHHHcC-CcEEEeC-CCCCCCHHHHHHHhcC-CCEEEEcCCchhhhHHHhhhhhcc--eeeeec
Confidence            5799999998876 57888775 5876544 3346799999999995 999988777789999999998 57  999999


Q ss_pred             ccCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHH
Q 026023           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA  134 (244)
Q Consensus        94 ~aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~  134 (244)
                      |+|+||||+++++++||+|+|+||+++.+|||+++.+|+.+
T Consensus        75 gvG~d~ID~~~a~~~gI~V~ntpg~~~~aVAE~A~~~~~l~  115 (129)
T d1gdha2          75 SIGFDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLI  115 (129)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECCCCSBHHHHHHHHHHHHHHH
T ss_pred             ccCCccccHHHHHhCCCEEEECCCCCchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999765544443

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=99.88  E-value=6.8e-23  Score=165.09  Aligned_cols=107  Identities=23%  Similarity=0.290  Sum_probs=89.3

Q ss_pred             chHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          122 TTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       122 ~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +||||+++++|++.|++..+++.+++|.|+.+. ....+.++.|+++||+|+|+||+++|++| ++|||+|.+|||+..+
T Consensus         2 sVAE~~l~~iL~~~R~~~~~~~~~~~g~w~~~~-~~~~~~~l~~~~vgiiG~G~IG~~va~~l-~~fg~~v~~~d~~~~~   79 (188)
T d2naca1           2 SVAEHVVMMILSLVRNYLPSHEWARKGGWNIAD-CVSHAYDLEAMHVGTVAAGRIGLAVLRRL-APFDVHLHYTDRHRLP   79 (188)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHH-HHTTCCCCTTCEEEEECCSHHHHHHHHHH-GGGTCEEEEECSSCCC
T ss_pred             cHHHHHHHHHHHHHhCHHHHHHHHHhCCCCCcc-cCCcceeccccceeeccccccchhhhhhh-hccCceEEEEeecccc
Confidence            799999999999999999999999999996432 22346789999999999999999999997 9999999999998654


Q ss_pred             HHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          202 RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      ......              ..+....++++++++||+|++||
T Consensus        80 ~~~~~~--------------~~~~~~~~l~~~l~~sD~v~~~~  108 (188)
T d2naca1          80 ESVEKE--------------LNLTWHATREDMYPVCDVVTLNC  108 (188)
T ss_dssp             HHHHHH--------------HTCEECSSHHHHGGGCSEEEECS
T ss_pred             cccccc--------------ccccccCCHHHHHHhccchhhcc
Confidence            222111              12345679999999999999997

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=99.85  E-value=7e-22  Score=155.93  Aligned_cols=117  Identities=16%  Similarity=0.096  Sum_probs=103.8

Q ss_pred             HHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEecc--CccccHHHHHHhhccCCcEEEEcccCCCccChHHHh
Q 026023           29 WINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAAN  106 (244)
Q Consensus        29 ~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~--~~~~~~~~l~~~p~l~~k~I~~~~aG~d~id~~~~~  106 (244)
                      +.+.|++.|+++....+.+  .+.+++.+++.+ ||++++.+  +.+++++.++++|+|  |+|++.|+|+||||+++|.
T Consensus        59 lr~~Le~~GhelV~~sd~~--~~~~el~k~l~D-ADivI~~pf~~~~lt~e~i~~ap~L--KlI~~~g~G~D~VDl~aa~  133 (186)
T d2naca2          59 LRKYLESNGHTLVVTSDKD--GPDSVFERELVD-ADVVISQPFWPAYLTPERIAKAKNL--KLALTAGIGSDHVDLQSAI  133 (186)
T ss_dssp             CHHHHHHTTCEEEEESCCS--STTSHHHHHHTT-CSEEEEBTTBCCCBCHHHHHHCTTC--CEEEESSSCCTTBCHHHHH
T ss_pred             HHHHHHHCCCEEEEecCCC--CChHHHHhhccc-CCEEEEecccccccCHHHHhcCccc--eEEEEeccCCccccHHHHH
Confidence            3577889999997765543  467788899985 99999863  467999999999999  9999999999999999999


Q ss_pred             hCCcEEEecCCCCCcchHHHH--------HHHHHHHHhChHHHHHHHHcCCC
Q 026023          107 KYGIAVGNTPGVLTETTAELA--------ASLSLAAARRIVEADEFMRAGLY  150 (244)
Q Consensus       107 ~~gI~v~n~~~~~~~~vAE~~--------l~~~L~~~R~~~~~~~~~~~~~w  150 (244)
                      ++||.|+|++|+|+.+||||+        +++++...|++...+..+++|+|
T Consensus       134 e~gI~V~n~pg~n~~SVAEha~~~~~~~~i~~il~~~r~~~~~~~~v~~G~~  185 (186)
T d2naca2         134 DRNVTVAEVTYCNSTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGAL  185 (186)
T ss_dssp             HTTCEEEECTTTTHCSHHHHHHHHHHHHHHHHHHHHTCCCCGGGEEEETTEE
T ss_pred             hCCCEEEECCCcCcHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhcccc
Confidence            999999999999999999999        88899999999888888888876

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=99.84  E-value=9.6e-22  Score=149.26  Aligned_cols=129  Identities=19%  Similarity=0.190  Sum_probs=99.8

Q ss_pred             CeEEEEeCCCCchHHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEcc
Q 026023           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA   94 (244)
Q Consensus        15 ~~~ilv~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~   94 (244)
                      ||+|++....+.....+.|++.+ ++.+...    .+.+|+.+.+.+.+++++++...++++++++++|+|  |+|++.|
T Consensus         1 mP~v~~ld~~d~~~e~~~L~~~~-~v~~~~~----~s~~e~~e~~~~~a~~vlv~~~~~i~~~~l~~~~~L--k~I~~~g   73 (133)
T d1mx3a2           1 MPLVALLDGRDCTVEMPILKDVA-TVAFCDA----QSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKAL--RIIVRIG   73 (133)
T ss_dssp             CCEEEESSCSCCTTTHHHHTTTC-EEEECCC----SSGGGSCHHHHHHEEEEEECSSSCBCHHHHTTCSSC--CEEEESS
T ss_pred             CCEEEEecCCcchhhHHHhcccc-eEEEecC----CChHHHHHHHhccCcEEEEEeCCCcCHHHHhhCCCC--eEEEEcC
Confidence            45666665444322256677654 7765433    245555554433588888877789999999999999  9999999


Q ss_pred             cCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCC
Q 026023           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD  151 (244)
Q Consensus        95 aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~  151 (244)
                      +|+||||+++|+++||.|+|+|++++ ++|||+++++|++.|++++..+....+.|+
T Consensus        74 ~G~d~iD~~~~~~~gI~v~n~p~~~~-~vAE~a~~lil~~~R~i~~a~~g~~~~~~~  129 (133)
T d1mx3a2          74 SGFDNIDIKSAGDLGIAVCNVPAASV-YSEQASIEMREEAAREIRRAITGRIPDSLK  129 (133)
T ss_dssp             SCCTTBCHHHHHHTTCEEECCCSTTH-CCHHHHHHHHHHHHHHHHHHHHSCTTTTCS
T ss_pred             CCcccEeeeeheeCCEEEEcCCCCCc-hhHHHHHHHHHHHHhhHHHHHhccccchhh
Confidence            99999999999999999999999987 579999999999999998886555555543

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=99.83  E-value=6.3e-21  Score=145.33  Aligned_cols=118  Identities=20%  Similarity=0.226  Sum_probs=90.9

Q ss_pred             EEEEeCCCCc-hHHHHHHHhCCCeEEEeccCCCCCCHHHHHHHhcCCccEEEeccCccccHHHHHHhhccCCcEEEEccc
Q 026023           17 RVVSTKPMPG-TRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (244)
Q Consensus        17 ~ilv~~~~~~-~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~k~I~~~~a   95 (244)
                      ||++.+..+. .++++.+.+..+++++...++ ..+ +++.+.+. ++|++++....++++++++++|.+++|+|++.|+
T Consensus         2 KI~~f~~~~~e~~~~e~~~~~~~~v~v~~~~~-~~~-~e~~~~~~-~~d~viv~~~~~i~~eil~~l~~~~LK~I~~~~v   78 (134)
T d1j4aa2           2 KIFAYAIREDEKPFLKEWEDAHKDVEVEYTDK-LLT-PETVALAK-GADGVVVYQQLDYIAETLQALADNGITKMSLRNV   78 (134)
T ss_dssp             EEEECSCCGGGHHHHHHHHHTCTTSEEEECSS-CCC-TTTGGGGT-TCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSS
T ss_pred             eEEEEecccccHHHHHHHHHhCCCEEEEECCC-CCC-HHHHHHhc-CCCEEEEecCCCcCHHHHhhhcccCeeEEEEccC
Confidence            5666554333 345666655544444333332 233 56777777 5999998777889999999998766799999999


Q ss_pred             CCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHH
Q 026023           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVE  140 (244)
Q Consensus        96 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~  140 (244)
                      |+||||++++.++||.|+|+|++   ++|||++++||+++|+...
T Consensus        79 G~d~ID~~aa~~~gI~V~N~P~~---svae~a~~~ml~l~r~~~~  120 (134)
T d1j4aa2          79 GVDNIDMAKAKELGFQITNVPVY---SYTTHAVRNMVVKAFDNNL  120 (134)
T ss_dssp             CCTTBCHHHHHHTTCEEECCCCS---CCBHHHHHHHHHHHHHHHH
T ss_pred             CcCccCHHHHHhCCeEEEECCCC---cHHHHHHHHHHHHHHHHhH
Confidence            99999999999999999999987   5899999999999998644

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=4.9e-12  Score=97.76  Aligned_cols=68  Identities=24%  Similarity=0.462  Sum_probs=58.5

Q ss_pred             ccccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (244)
Q Consensus       160 ~~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~  239 (244)
                      ...|.||+++|+|||.||+.+|+++ ++|||+|+++++.|....+...+.|               ...+++++++.||+
T Consensus        19 ~~~l~Gk~v~V~GyG~iG~g~A~~~-rg~G~~V~v~e~dp~~al~A~~dG~---------------~v~~~~~a~~~adi   82 (163)
T d1li4a1          19 DVMIAGKVAVVAGYGDVGKGCAQAL-RGFGARVIITEIDPINALQAAMEGY---------------EVTTMDEACQEGNI   82 (163)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHHHTTC---------------EECCHHHHTTTCSE
T ss_pred             CceecCCEEEEeccccccHHHHHHH-HhCCCeeEeeecccchhHHhhcCce---------------EeeehhhhhhhccE
Confidence            4569999999999999999999997 9999999999999877666554432               44689999999999


Q ss_pred             EEEe
Q 026023          240 VCTL  243 (244)
Q Consensus       240 Vvl~  243 (244)
                      ++.+
T Consensus        83 vvta   86 (163)
T d1li4a1          83 FVTT   86 (163)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            9876

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=98.77  E-value=5.8e-09  Score=79.91  Aligned_cols=67  Identities=19%  Similarity=0.362  Sum_probs=57.2

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      ..+.||++.|+|||.+|+-+|+++ +++|++|+++...|-...+...+.               ....+++|+++.+|++
T Consensus        19 ~~laGk~vvV~GYG~vGrG~A~~~-rg~Ga~V~V~E~DPi~alqA~mdG---------------f~v~~~~~a~~~aDi~   82 (163)
T d1v8ba1          19 FLISGKIVVICGYGDVGKGCASSM-KGLGARVYITEIDPICAIQAVMEG---------------FNVVTLDEIVDKGDFF   82 (163)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHH-HHHTCEEEEECSCHHHHHHHHTTT---------------CEECCHHHHTTTCSEE
T ss_pred             ceecCCEEEEecccccchhHHHHH-HhCCCEEEEEecCchhhHHHHhcC---------------CccCchhHccccCcEE
Confidence            458999999999999999999997 999999999999987655554332               2457999999999999


Q ss_pred             EEe
Q 026023          241 CTL  243 (244)
Q Consensus       241 vl~  243 (244)
                      +..
T Consensus        83 vTa   85 (163)
T d1v8ba1          83 ITC   85 (163)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            865

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.49  E-value=1.4e-07  Score=72.28  Aligned_cols=63  Identities=22%  Similarity=0.326  Sum_probs=50.5

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +|||||+|.+|+.+|+.| ..-|.+|.+|||++... +++.+.             ......+..|++++||+|++++
T Consensus         2 kIgiIGlG~MG~~~A~~L-~~~G~~V~~~d~~~~~~-~~~~~~-------------~~~~~~~~~e~~~~~d~ii~~v   64 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNL-LKAGYSLVVSDRNPEAI-ADVIAA-------------GAETASTAKAIAEQCDVIITML   64 (161)
T ss_dssp             EEEEECCSTTHHHHHHHH-HHTTCEEEEECSCHHHH-HHHHHT-------------TCEECSSHHHHHHHCSEEEECC
T ss_pred             EEEEEehhHHHHHHHHHH-HHCCCeEEEEeCCcchh-HHHHHh-------------hhhhcccHHHHHhCCCeEEEEc
Confidence            699999999999999999 68899999999997652 332211             1234578999999999999875

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=98.35  E-value=2.8e-07  Score=64.07  Aligned_cols=70  Identities=21%  Similarity=0.168  Sum_probs=50.2

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC  241 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv  241 (244)
                      +++||+|.|+|+|..|+++|+.| ...|++|.++|.+..+...+.       ..    ..........-++.+.+.|+|+
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L-~~~g~~v~~~D~~~~~~~~~~-------~~----~~~~~~~~~~~~~~~~~~d~vi   69 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFF-LARGVTPRVMDTRMTPPGLDK-------LP----EAVERHTGSLNDEWLMAADLIV   69 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHH-HHTTCCCEEEESSSSCTTGGG-------SC----TTSCEEESBCCHHHHHHCSEEE
T ss_pred             CcCCCEEEEEeECHHHHHHHHHH-HHCCCEEEEeeCCcCchhHHH-------Hh----hccceeecccchhhhccCCEEE
Confidence            47899999999999999999998 899999999999876432111       11    1111111112367789999999


Q ss_pred             Ee
Q 026023          242 TL  243 (244)
Q Consensus       242 l~  243 (244)
                      ++
T Consensus        70 ~S   71 (93)
T d2jfga1          70 AS   71 (93)
T ss_dssp             EC
T ss_pred             EC
Confidence            75

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.32  E-value=4.4e-07  Score=69.39  Aligned_cols=64  Identities=25%  Similarity=0.347  Sum_probs=50.4

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      ++||+||+|.+|..+|++| ..-|.+|.+|||+++.. +....             .+.....++.|++..+|+|++++
T Consensus         2 ~kIg~IGlG~MG~~iA~~L-~~~g~~v~~~d~~~~~~-~~~~~-------------~~~~~~~~~~e~~~~~diii~~v   65 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNL-LKAGYLLNVFDLVQSAV-DGLVA-------------AGASAARSARDAVQGADVVISML   65 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHH-HHTTCEEEEECSSHHHH-HHHHH-------------TTCEECSSHHHHHTSCSEEEECC
T ss_pred             CEEEEEEEHHHHHHHHHHH-HHCCCeEEEEECchhhh-hhhhh-------------hhccccchhhhhccccCeeeecc
Confidence            4799999999999999999 67899999999997652 22211             12234568999999999999874

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=98.31  E-value=3.4e-07  Score=70.00  Aligned_cols=64  Identities=27%  Similarity=0.237  Sum_probs=46.1

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +|||||+|.+|..+|+.| +.-|.+|.+|||++... +...+        .+.  . ... .+..+.+++||+|++++
T Consensus         2 kI~iIG~G~mG~~lA~~l-~~~g~~V~~~d~~~~~~-~~a~~--------~~~--~-~~~-~~~~~~~~~~DiIilav   65 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDL-RRRGHYLIGVSRQQSTC-EKAVE--------RQL--V-DEA-GQDLSLLQTAKIIFLCT   65 (165)
T ss_dssp             EEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHH-HHHHH--------TTS--C-SEE-ESCGGGGTTCSEEEECS
T ss_pred             EEEEEeecHHHHHHHHHH-HHCCCEEEEEECCchHH-HHHHH--------hhc--c-cee-eeecccccccccccccC
Confidence            699999999999999998 89999999999986441 21111        111  0 112 23446789999999874

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.29  E-value=1.3e-06  Score=66.05  Aligned_cols=64  Identities=19%  Similarity=0.262  Sum_probs=49.9

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      ++||+|+|++|+.+++.| ..-|-+|..++|++.. .++..+.+            +.....+.++++++||+|++++
T Consensus         2 kIg~IG~G~mG~al~~~l-~~~~~~i~v~~r~~~~-~~~l~~~~------------g~~~~~~~~~~~~~~dvIilav   65 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGL-KQTPHELIISGSSLER-SKEIAEQL------------ALPYAMSHQDLIDQVDLVILGI   65 (152)
T ss_dssp             EEEEECCSHHHHHHHHHH-TTSSCEEEEECSSHHH-HHHHHHHH------------TCCBCSSHHHHHHTCSEEEECS
T ss_pred             EEEEEeccHHHHHHHHHH-HhCCCeEEEEcChHHh-HHhhcccc------------ceeeechhhhhhhccceeeeec
Confidence            699999999999999998 6779999999998654 23322222            2234468999999999999875

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.28  E-value=7.6e-07  Score=67.25  Aligned_cols=63  Identities=14%  Similarity=0.136  Sum_probs=48.9

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +|||||+|++|+.+|+.| ..-|.+|.++++.+........+..            +  ...+++|++++||+|++++
T Consensus         2 kIgiIG~G~mG~~ia~~l-~~~g~~v~~~~~~~~~~~~~~~~~~------------~--~~~~~~e~~~~~diIi~~v   64 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRL-RSRGVEVVTSLEGRSPSTIERARTV------------G--VTETSEEDVYSCPVVISAV   64 (152)
T ss_dssp             EEEEESCSHHHHHHHHHH-HHTTCEEEECCTTCCHHHHHHHHHH------------T--CEECCHHHHHTSSEEEECS
T ss_pred             EEEEEcHHHHHHHHHHHH-HHCCCeEEEEcCchhHHHHHhhhcc------------c--ccccHHHHHhhcCeEEEEe
Confidence            699999999999999999 6789999999988765322221111            1  2357899999999999875

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.28  E-value=8.9e-07  Score=67.66  Aligned_cols=71  Identities=21%  Similarity=0.253  Sum_probs=55.6

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      ++.++++.|+|+|.+|+.+++.| ...|+ ++..++|+... .++....+|          ..+..++++.+.+.++|+|
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L-~~~g~~~i~v~nRt~~k-a~~l~~~~~----------~~~~~~~~~~~~l~~~Div   88 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSL-VDRGVRAVLVANRTYER-AVELARDLG----------GEAVRFDELVDHLARSDVV   88 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHH-HHHCCSEEEEECSSHHH-HHHHHHHHT----------CEECCGGGHHHHHHTCSEE
T ss_pred             CcccCeEEEECCCHHHHHHHHHH-HhcCCcEEEEEcCcHHH-HHHHHHhhh----------cccccchhHHHHhccCCEE
Confidence            48999999999999999999998 78999 69999998644 233333331          2234567899999999999


Q ss_pred             EEeC
Q 026023          241 CTLC  244 (244)
Q Consensus       241 vl~~  244 (244)
                      +.+.
T Consensus        89 i~at   92 (159)
T d1gpja2          89 VSAT   92 (159)
T ss_dssp             EECC
T ss_pred             EEec
Confidence            9863

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.18  E-value=2.1e-06  Score=61.50  Aligned_cols=72  Identities=13%  Similarity=0.139  Sum_probs=51.3

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      .+++||+|+|+|.|.+|.+-|+.| ..+|++|+++++...++.....+.          ..+.+..-.--++.+..+|+|
T Consensus         8 l~l~~k~vlVvG~G~va~~ka~~l-l~~ga~v~v~~~~~~~~~~~~~~~----------~~i~~~~~~~~~~dl~~~~lv   76 (113)
T d1pjqa1           8 CQLRDRDCLIVGGGDVAERKARLL-LEAGARLTVNALTFIPQFTVWANE----------GMLTLVEGPFDETLLDSCWLA   76 (113)
T ss_dssp             ECCBTCEEEEECCSHHHHHHHHHH-HHTTBEEEEEESSCCHHHHHHHTT----------TSCEEEESSCCGGGGTTCSEE
T ss_pred             EEeCCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEeccCChHHHHHHhc----------CCceeeccCCCHHHhCCCcEE
Confidence            479999999999999999999998 899999999999887754443221          111111111223456778887


Q ss_pred             EEe
Q 026023          241 CTL  243 (244)
Q Consensus       241 vl~  243 (244)
                      +.+
T Consensus        77 ~~a   79 (113)
T d1pjqa1          77 IAA   79 (113)
T ss_dssp             EEC
T ss_pred             eec
Confidence            764

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=98.06  E-value=4.6e-06  Score=64.03  Aligned_cols=77  Identities=17%  Similarity=0.280  Sum_probs=51.5

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcC---CCCCccccccCCHHHHhhhCCEEE
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN---GEQPVTWKRASSMDEVLREADVVC  241 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~ell~~sD~Vv  241 (244)
                      .||+.|+|.|++|..+|..| ...|.+|..|+|++.. .+.. ...+......   ...........++.|.+++||+|+
T Consensus         1 sk~iaIiGaG~~G~~~A~~l-~~~G~~V~~~~r~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~ii   77 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYL-ALKGQSVLAWDIDAQR-IKEI-QDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVIL   77 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHH-HHHH-HHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEE
T ss_pred             CCEEEEECccHHHHHHHHHH-HHCCCEEEEEECCHHH-HHHH-HHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEE
Confidence            47999999999999999999 6789999999998644 2221 1111100000   001111223457999999999999


Q ss_pred             EeC
Q 026023          242 TLC  244 (244)
Q Consensus       242 l~~  244 (244)
                      +++
T Consensus        78 i~v   80 (184)
T d1bg6a2          78 IVV   80 (184)
T ss_dssp             ECS
T ss_pred             EEE
Confidence            864

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=98.05  E-value=3.7e-06  Score=66.55  Aligned_cols=66  Identities=26%  Similarity=0.299  Sum_probs=49.5

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh-hCCEE
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVV  240 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~sD~V  240 (244)
                      +|.|+||+|-|||++|+.+|+.| ..+|++|+++|..+..- +.. ..+            +. ...+.++++. .||++
T Consensus        24 ~L~gk~v~IqG~G~VG~~~A~~L-~~~Gakvvv~d~d~~~~-~~~-~~~------------g~-~~~~~~~~~~~~~DI~   87 (201)
T d1c1da1          24 SLDGLTVLVQGLGAVGGSLASLA-AEAGAQLLVADTDTERV-AHA-VAL------------GH-TAVALEDVLSTPCDVF   87 (201)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHH-HHH-HHT------------TC-EECCGGGGGGCCCSEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEecchHHHH-HHH-Hhh------------cc-cccCccccccccceee
Confidence            59999999999999999999998 89999999999876431 111 111            11 2346677777 78998


Q ss_pred             EEe
Q 026023          241 CTL  243 (244)
Q Consensus       241 vl~  243 (244)
                      +-|
T Consensus        88 iPc   90 (201)
T d1c1da1          88 APC   90 (201)
T ss_dssp             EEC
T ss_pred             ecc
Confidence            754

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.97  E-value=6e-06  Score=61.96  Aligned_cols=38  Identities=16%  Similarity=0.284  Sum_probs=33.9

Q ss_pred             cCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          163 LKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       163 l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ..=++|+||| +|.+|+.+|+.| +.-|.+|.+||+....
T Consensus         7 ~~~~kI~iIGg~G~mG~~la~~L-~~~G~~V~~~d~~~~~   45 (152)
T d2pv7a2           7 SDIHKIVIVGGYGKLGGLFARYL-RASGYPISILDREDWA   45 (152)
T ss_dssp             TTCCCEEEETTTSHHHHHHHHHH-HTTTCCEEEECTTCGG
T ss_pred             CCCCeEEEEcCCCHHHHHHHHHH-HHcCCCcEeccccccc
Confidence            4556999999 999999999999 8999999999998654

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.94  E-value=5.1e-06  Score=63.40  Aligned_cols=35  Identities=23%  Similarity=0.447  Sum_probs=30.3

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCC--cEEEEEcCCcch
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQAT  201 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG--~~V~~~~~~~~~  201 (244)
                      |+|+|+|+|.||..+|+.| +..|  .+|.+||+++..
T Consensus         2 k~I~IIG~G~mG~sla~~L-~~~g~~~~I~~~D~~~~~   38 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSL-RRSGFKGKIYGYDINPES   38 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHH-HHTTCCSEEEEECSCHHH
T ss_pred             CEEEEEccCHHHHHHHHHH-HhcCCCeEEEEEECChHH
Confidence            4799999999999999998 6766  489999998654

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.89  E-value=6e-06  Score=63.65  Aligned_cols=72  Identities=14%  Similarity=0.232  Sum_probs=49.6

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +.|||||+|++|..+|++| ..-|.+|.+|||++.. .+++.+..     .............++.+.+..+|.+++++
T Consensus         3 ~nIg~IGlG~MG~~mA~~L-~~~G~~V~v~dr~~~~-~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~ii~~~   74 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNM-NDHGFVVCAFNRTVSK-VDDFLANE-----AKGTKVLGAHSLEEMVSKLKKPRRIILLV   74 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHH-HHTTCCEEEECSSTHH-HHHHHHTT-----TTTSSCEECSSHHHHHHHBCSSCEEEECS
T ss_pred             CcEEEEeEhHHHHHHHHHH-HHCCCeEEEEcCCHHH-HHHHHHhc-----cccccccchhhhhhhhhhhcccceEEEec
Confidence            4799999999999999999 6779999999999865 23332211     01111112233456777888889988764

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.86  E-value=7e-06  Score=58.75  Aligned_cols=41  Identities=20%  Similarity=0.293  Sum_probs=35.8

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHH
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL  203 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~  203 (244)
                      ...+.+|||+|-|..|+.+|.- |+.+|.+++++|+++....
T Consensus         8 ~~~~~kigIlGgGQL~rMla~a-A~~lG~~v~v~d~~~~~PA   48 (111)
T d1kjqa2           8 RPAATRVMLLGSGELGKEVAIE-CQRLGVEVIAVDRYADAPA   48 (111)
T ss_dssp             STTCCEEEEESCSHHHHHHHHH-HHTTTCEEEEEESSTTCGG
T ss_pred             CCCCCEEEEEeCCHHHHHHHHH-HHHCCCEEEEEcCCCCCch
Confidence            3456689999999999999999 5999999999999987643

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=97.74  E-value=1.5e-05  Score=59.76  Aligned_cols=64  Identities=17%  Similarity=0.196  Sum_probs=44.1

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +|||+|+|++|+.+++.|.+.=+.+|..++|++.. .++..+.+            +....++.++ +++||+|++++
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~-~~~l~~~~------------~~~~~~~~~~-v~~~Div~lav   65 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEK-RERLEKEL------------GVETSATLPE-LHSDDVLILAV   65 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHH-HHHHHHHT------------CCEEESSCCC-CCTTSEEEECS
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhH-HHHhhhhc------------cccccccccc-ccccceEEEec
Confidence            69999999999999997634434799999999754 23322222            1222344544 57899999875

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=97.70  E-value=4.1e-06  Score=62.88  Aligned_cols=61  Identities=11%  Similarity=0.269  Sum_probs=39.4

Q ss_pred             EEEEcCChHHHHHHHHHhccCCcE-EEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          168 VGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       168 vgIvG~G~IG~~vA~~la~afG~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      ||+||+|+.|+.+++.| +. +.. +..|+|++.. .++..+.++             ....++.|++++||+|++++
T Consensus         2 IgfIG~G~mg~~l~~~L-~~-~~~~~~v~~R~~~~-~~~l~~~~~-------------~~~~~~~~~~~~~DiVil~v   63 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECL-KD-RYEIGYILSRSIDR-ARNLAEVYG-------------GKAATLEKHPELNGVVFVIV   63 (153)
T ss_dssp             CEEESCCHHHHHHHHTT-C-----CCCEECSSHHH-HHHHHHHTC-------------CCCCSSCCCCC---CEEECS
T ss_pred             EEEEeCcHHHHHHHHHH-Hh-CCCEEEEEeCChhh-hcchhhccc-------------ccccchhhhhccCcEEEEec
Confidence            79999999999999998 55 444 4578998654 233333221             12357889999999999875

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.59  E-value=3.9e-05  Score=55.92  Aligned_cols=68  Identities=13%  Similarity=0.295  Sum_probs=47.0

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCC--ccccccCCHHHH-hhhCCEEEE
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--VTWKRASSMDEV-LREADVVCT  242 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~el-l~~sD~Vvl  242 (244)
                      |+..|+|+|++|+.+|+.| ...|.+|..+|..+... ++.        +..+...  ......+.|+++ +.++|.|++
T Consensus         1 k~~iIiG~G~~G~~la~~L-~~~g~~vvvid~d~~~~-~~~--------~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~   70 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKEL-HRMGHEVLAVDINEEKV-NAY--------ASYATHAVIANATEENELLSLGIRNFEYVIV   70 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHH-HHTTCCCEEEESCHHHH-HHT--------TTTCSEEEECCTTCTTHHHHHTGGGCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHH-HHCCCeEEEecCcHHHH-HHH--------HHhCCcceeeecccchhhhccCCccccEEEE
Confidence            5689999999999999999 89999999999987542 221        1111111  112233456666 889998876


Q ss_pred             e
Q 026023          243 L  243 (244)
Q Consensus       243 ~  243 (244)
                      .
T Consensus        71 ~   71 (134)
T d2hmva1          71 A   71 (134)
T ss_dssp             C
T ss_pred             E
Confidence            4

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=7.6e-05  Score=58.23  Aligned_cols=76  Identities=18%  Similarity=0.236  Sum_probs=49.7

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchH--HHHHHh-hhhhhhhcCCCC------------CccccccCCH
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATR--LEKFVT-AYGQFLKANGEQ------------PVTWKRASSM  230 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~------------~~~~~~~~~l  230 (244)
                      ++|+|+|.|.+|+.+|..+ ...|.+|+.||+++...  ..+..+ .+....+.....            ........++
T Consensus         5 kkvaViGaG~mG~~iA~~~-a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~   83 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVA-AATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDA   83 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCH
T ss_pred             EEEEEECcCHHHHHHHHHH-HhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchh
Confidence            6899999999999999998 68999999999997531  111111 111111111100            0112345688


Q ss_pred             HHHhhhCCEEEE
Q 026023          231 DEVLREADVVCT  242 (244)
Q Consensus       231 ~ell~~sD~Vvl  242 (244)
                      .+.+++||+|+=
T Consensus        84 ~~a~~~ad~ViE   95 (192)
T d1f0ya2          84 ASVVHSTDLVVE   95 (192)
T ss_dssp             HHHTTSCSEEEE
T ss_pred             Hhhhcccceehh
Confidence            999999999873

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.48  E-value=9.1e-05  Score=57.50  Aligned_cols=81  Identities=16%  Similarity=0.198  Sum_probs=55.8

Q ss_pred             ccccCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCC
Q 026023          160 GNLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (244)
Q Consensus       160 ~~~l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (244)
                      +.+|.||++.|.| -|.||+.+|+.| ...|++|+.++|+.... ++..+.+.... .............++++++.+.|
T Consensus        18 ~~~l~gK~vlItGasgGIG~~ia~~l-a~~G~~V~~~~r~~~~~-~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~iD   94 (191)
T d1luaa1          18 GGSVKGKKAVVLAGTGPVGMRSAALL-AGEGAEVVLCGRKLDKA-QAAADSVNKRF-KVNVTAAETADDASRAEAVKGAH   94 (191)
T ss_dssp             TSCCTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSHHHH-HHHHHHHHHHH-TCCCEEEECCSHHHHHHHTTTCS
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHH-HhhccchhhcccchHHH-HHHHHHHHhcc-chhhhhhhcccHHHHHHHhcCcC
Confidence            4679999999999 699999999998 79999999999997542 22222221111 11111222333456888999999


Q ss_pred             EEEEe
Q 026023          239 VVCTL  243 (244)
Q Consensus       239 ~Vvl~  243 (244)
                      +|+.+
T Consensus        95 ilin~   99 (191)
T d1luaa1          95 FVFTA   99 (191)
T ss_dssp             EEEEC
T ss_pred             eeeec
Confidence            98754

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=97.41  E-value=0.0002  Score=57.37  Aligned_cols=40  Identities=25%  Similarity=0.400  Sum_probs=36.7

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .+|.|+||.|-|||++|+.+|+.| ...|++|++.|.+...
T Consensus        35 ~~l~g~~v~IqG~GnVG~~~a~~L-~~~Gakvv~~d~~~~~   74 (230)
T d1leha1          35 DSLEGLAVSVQGLGNVAKALCKKL-NTEGAKLVVTDVNKAA   74 (230)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEeecccHHH
Confidence            469999999999999999999999 8999999999987643

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=97.40  E-value=9e-05  Score=56.48  Aligned_cols=61  Identities=15%  Similarity=0.262  Sum_probs=44.0

Q ss_pred             CEEEEEcCChHHHHHHHHHhccC-CcEEEEE-cCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGF-KMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~af-G~~V~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      .+|||+|+|+||+..++.+ +.. ++++.++ +++...                 ..........++++++.+.|+|+++
T Consensus         4 irvgiiG~G~ig~~~~~~l-~~~~~~elvav~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~D~Vvi~   65 (170)
T d1f06a1           4 IRVAIVGYGNLGRSVEKLI-AKQPDMDLVGIFSRRATL-----------------DTKTPVFDVADVDKHADDVDVLFLC   65 (170)
T ss_dssp             EEEEEECCSHHHHHHHHHH-TTCSSEEEEEEEESSSCC-----------------SSSSCEEEGGGGGGTTTTCSEEEEC
T ss_pred             ceEEEECChHHHHHHHHHH-HhCCCcEEEEEEeccccc-----------------ccccccccchhhhhhccccceEEEe
Confidence            4799999999999999998 666 7776654 444322                 1122334556888889999999986


Q ss_pred             C
Q 026023          244 C  244 (244)
Q Consensus       244 ~  244 (244)
                      +
T Consensus        66 t   66 (170)
T d1f06a1          66 M   66 (170)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=0.00011  Score=48.79  Aligned_cols=36  Identities=19%  Similarity=0.283  Sum_probs=33.2

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchH
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATR  202 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~  202 (244)
                      |||||+|-|..|+.++.- |+.+|.+++.+|+.....
T Consensus         2 k~vgIlG~GQLgrMl~~A-a~~LG~~v~vldp~~~~p   37 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQA-GEPLGIAVWPVGLDAEPA   37 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHH-HGGGTEEEEEECTTSCGG
T ss_pred             CEEEEEcCCHHHHHHHHH-HHHcCCEEEEEcCCCCCc
Confidence            699999999999999999 699999999999987653

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=97.34  E-value=0.00042  Score=52.07  Aligned_cols=65  Identities=17%  Similarity=0.254  Sum_probs=44.5

Q ss_pred             EEEEEcCChHHHH-HHHHHhccCCcEEEE-EcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          167 TVGVIGAGRIGSA-YARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       167 tvgIvG~G~IG~~-vA~~la~afG~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      ++||+|+|++|+. ....+.+.-+.++.+ +|+++.. ..++.+.|+            ...++++++++++.|+|++++
T Consensus         3 ri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~-~~~~~~~~~------------~~~~~~~~~l~~~~D~V~I~t   69 (164)
T d1tlta1           3 RIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAK-ALPICESWR------------IPYADSLSSLAASCDAVFVHS   69 (164)
T ss_dssp             EEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTT-HHHHHHHHT------------CCBCSSHHHHHTTCSEEEECS
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHh-hhhhhhccc------------ccccccchhhhhhcccccccc
Confidence            7999999999986 466663334788664 5666543 333333331            224578999999999998864

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.30  E-value=9.6e-05  Score=56.51  Aligned_cols=34  Identities=21%  Similarity=0.361  Sum_probs=31.3

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +|||||+|+.|..+|+.| ..-|.+|.+|||++..
T Consensus         3 kIGvIGlG~MG~~ma~~L-~~~G~~V~~~dr~~~~   36 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNI-AEKGFKVAVFNRTYSK   36 (178)
T ss_dssp             SEEEECCSHHHHHHHHHH-HHTTCCEEEECSSHHH
T ss_pred             EEEEEeehHHHHHHHHHH-HHCCCeEEEEECCHHH
Confidence            699999999999999999 6789999999998765

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.25  E-value=0.00024  Score=53.97  Aligned_cols=74  Identities=22%  Similarity=0.403  Sum_probs=52.9

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC  241 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv  241 (244)
                      .+...+|.|+|.|..|..-++. |+.+|++|..+|.+... .++....|+.    ...  .-......+++.+++||+|+
T Consensus        29 gv~pa~V~ViGaGvaG~~A~~~-A~~lGA~V~~~D~~~~~-l~~l~~~~~~----~~~--~~~~~~~~l~~~~~~aDivI  100 (168)
T d1pjca1          29 GVKPGKVVILGGGVVGTEAAKM-AVGLGAQVQIFDINVER-LSYLETLFGS----RVE--LLYSNSAEIETAVAEADLLI  100 (168)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHH-HHHTTCEEEEEESCHHH-HHHHHHHHGG----GSE--EEECCHHHHHHHHHTCSEEE
T ss_pred             CCCCcEEEEECCChHHHHHHHH-HhhCCCEEEEEeCcHHH-HHHHHHhhcc----cce--eehhhhhhHHHhhccCcEEE
Confidence            4678899999999999999999 59999999999998754 2222222221    111  11112236899999999998


Q ss_pred             Ee
Q 026023          242 TL  243 (244)
Q Consensus       242 l~  243 (244)
                      -+
T Consensus       101 ~a  102 (168)
T d1pjca1         101 GA  102 (168)
T ss_dssp             EC
T ss_pred             Ee
Confidence            65

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.24  E-value=0.00036  Score=53.49  Aligned_cols=76  Identities=21%  Similarity=0.159  Sum_probs=49.2

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcC--CCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN--GEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +|+|+|.|..|..+|..|+ --|-+|..|.|...++..+...... .....  ...........++++.++.||+|++++
T Consensus         2 kI~ViGaG~~GtalA~~la-~~g~~V~l~~r~~~~~~~~~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~av   79 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLV-DNGNEVRIWGTEFDTEILKSISAGR-EHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGV   79 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHH-HHCCEEEEECCGGGHHHHHHHHTTC-CBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECS
T ss_pred             EEEEECCCHHHHHHHHHHH-HCCCEEEEEEecccHHHHHHHhhhh-hhhhhcchhccccccccccHHHHHhccchhhccc
Confidence            7999999999999999994 6688999999865443222221100 00000  001111233468999999999999864

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.24  E-value=0.00057  Score=51.18  Aligned_cols=76  Identities=18%  Similarity=0.279  Sum_probs=48.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHH--HHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRL--EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      +.++|+|+|.|++|+.+|-.| ...+. ++..+|..+....  +.+.....+.    ...........+.++.++.||+|
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l-~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~adiV   80 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLC-ALRELADVVLYDVVKGMPEGKALDLSHVTSV----VDTNVSVRAEYSYEAALTGADCV   80 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHH-HHHTCCEEEEECSSSSHHHHHHHHHHHHHHH----TTCCCCEEEECSHHHHHTTCSEE
T ss_pred             CCCcEEEECCCHHHHHHHHHH-HhCCCceEEEEEeccccchhHHHHHhhhccc----cCCeeEEeccCchhhhhcCCCeE
Confidence            457999999999999999876 55564 8999998764311  1111111011    11112222345678999999999


Q ss_pred             EEeC
Q 026023          241 CTLC  244 (244)
Q Consensus       241 vl~~  244 (244)
                      ++++
T Consensus        81 vita   84 (154)
T d1pzga1          81 IVTA   84 (154)
T ss_dssp             EECC
T ss_pred             EEec
Confidence            9864

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.22  E-value=0.00017  Score=53.96  Aligned_cols=70  Identities=10%  Similarity=0.090  Sum_probs=47.6

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +|+|+|.|.||..+|..| ..-|.+|..++|..+....  ...     ..............+..+.+..+|+|++++
T Consensus         2 kI~IiGaG~iG~~~a~~L-~~~G~~V~~~~r~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~D~iii~v   71 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTAL-CKQGHEVQGWLRVPQPYCS--VNL-----VETDGSIFNESLTANDPDFLATSDLLLVTL   71 (167)
T ss_dssp             EEEEECCSHHHHHHHHHH-HHTTCEEEEECSSCCSEEE--EEE-----ECTTSCEEEEEEEESCHHHHHTCSEEEECS
T ss_pred             EEEEECcCHHHHHHHHHH-HHCCCceEEEEcCHHHhhh--hcc-----ccCCccccccccccchhhhhcccceEEEee
Confidence            799999999999999999 6789999999998764210  000     001111111122335678889999999875

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.16  E-value=0.00045  Score=53.11  Aligned_cols=77  Identities=17%  Similarity=0.160  Sum_probs=44.1

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCC-cchHHHHHHhh----hhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY-QATRLEKFVTA----YGQFLKANGEQPVTWKRASSMDEVLREADVVC  241 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv  241 (244)
                      +|||.|||+||+.++|.+...=+++|.+++.. +..........    ++.+.........+..-..++++++.++|+|+
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiVi   82 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV   82 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCEEE
Confidence            79999999999999999844446888887554 33322211110    00000000000001112347899999999998


Q ss_pred             Ee
Q 026023          242 TL  243 (244)
Q Consensus       242 l~  243 (244)
                      -|
T Consensus        83 ec   84 (178)
T d1b7go1          83 DT   84 (178)
T ss_dssp             EC
T ss_pred             EC
Confidence            65

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.15  E-value=0.0006  Score=53.13  Aligned_cols=74  Identities=15%  Similarity=0.294  Sum_probs=47.9

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhh---------hhhhhhcCCCCCccccccCCHHHHhhhC
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA---------YGQFLKANGEQPVTWKRASSMDEVLREA  237 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~ell~~s  237 (244)
                      +|+|+|+|.+|..+|..| ..-|.+|++||...+. .+. ...         ....+.. ...........++++.++.|
T Consensus         2 kI~ViGlG~vGl~~a~~l-a~~g~~V~g~D~n~~~-i~~-ln~g~~p~~e~~~~~~l~~-~~~~~~~~~~~~~~~~i~~~   77 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCL-SARGHEVIGVDVSSTK-IDL-INQGKSPIVEPGLEALLQQ-GRQTGRLSGTTDFKKAVLDS   77 (202)
T ss_dssp             EEEEECCSTTHHHHHHHH-HHTTCEEEEECSCHHH-HHH-HHTTCCSSCCTTHHHHHHH-HHHTTCEEEESCHHHHHHTC
T ss_pred             EEEEECCCHhHHHHHHHH-HhCCCcEEEEeCCHHH-HHH-hcccCCcccchhhhhhhhh-hhcccccccCCCHHHHHhhC
Confidence            699999999999999999 5889999999987532 110 000         0000000 00001122346889999999


Q ss_pred             CEEEEeC
Q 026023          238 DVVCTLC  244 (244)
Q Consensus       238 D~Vvl~~  244 (244)
                      |++++++
T Consensus        78 d~i~i~V   84 (202)
T d1mv8a2          78 DVSFICV   84 (202)
T ss_dssp             SEEEECC
T ss_pred             CEEEEec
Confidence            9999875

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=97.14  E-value=0.00056  Score=52.96  Aligned_cols=75  Identities=16%  Similarity=0.268  Sum_probs=49.5

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhh---hhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ---FLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      ++|+|+|.|..|.++|..| .--|-+|..|+|.+..  .+.....+.   +... ...+-......++++.++.||+|++
T Consensus         8 ~KI~ViGaG~wGtAlA~~L-a~~g~~V~l~~r~~~~--~~~i~~~~~n~~yl~~-~~l~~~i~~t~~l~~a~~~ad~iii   83 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVL-SKKCREVCVWHMNEEE--VRLVNEKRENVLFLKG-VQLASNITFTSDVEKAYNGAEIILF   83 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHH-HTTEEEEEEECSCHHH--HHHHHHHTBCTTTSTT-CBCCTTEEEESCHHHHHTTCSCEEE
T ss_pred             ceEEEECCCHHHHHHHHHH-HHcCCeEEEEEecHHH--HHHHhhcccccccccc-cccccccccchhhhhccCCCCEEEE
Confidence            5799999999999999998 5678899999987533  111111000   0000 0111123345689999999999998


Q ss_pred             eC
Q 026023          243 LC  244 (244)
Q Consensus       243 ~~  244 (244)
                      ++
T Consensus        84 av   85 (189)
T d1n1ea2          84 VI   85 (189)
T ss_dssp             CS
T ss_pred             cC
Confidence            64

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=97.11  E-value=0.00025  Score=53.09  Aligned_cols=61  Identities=21%  Similarity=0.218  Sum_probs=40.0

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEeC
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTLC  244 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~~  244 (244)
                      +||+||+|+.|..+|++|. .-|..+ +++|+..+. .+..+..+              ...+..+.+.++|++++++
T Consensus         2 kIg~IGlG~MG~~ma~~L~-~~g~~~-~~~~~~~~~-~~~~~~~~--------------~~~~~~~~~~~~~~~i~~~   62 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLA-RRFPTL-VWNRTFEKA-LRHQEEFG--------------SEAVPLERVAEARVIFTCL   62 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHH-TTSCEE-EECSSTHHH-HHHHHHHC--------------CEECCGGGGGGCSEEEECC
T ss_pred             eEEEEeHHHHHHHHHHHHH-hCCCEE-EEeCCHHHH-HHHHHHcC--------------CcccccccccceeEEEecc
Confidence            6999999999999999994 556655 566655432 22222221              1123456777899998764

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=97.10  E-value=0.00071  Score=57.16  Aligned_cols=73  Identities=21%  Similarity=0.346  Sum_probs=55.1

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      .++++|+|.|..++.-++.+..-|+. +|..|+|++... +.+.+.+      .....+.+...+++++.++.||+|+.+
T Consensus       128 a~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~-~~~~~~l------~~~~g~~v~~~~s~~eav~~ADIi~t~  200 (340)
T d1x7da_         128 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLAT-AKLIANL------KEYSGLTIRRASSVAEAVKGVDIITTV  200 (340)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHH-HHHHHHH------TTCTTCEEEECSSHHHHHTTCSEEEEC
T ss_pred             CceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHH-HHHHHhh------hhccCCCceecCCHHHHHhcCCceeec
Confidence            35899999999999888876678887 799999997552 4444332      122345566778999999999999875


Q ss_pred             C
Q 026023          244 C  244 (244)
Q Consensus       244 ~  244 (244)
                      +
T Consensus       201 T  201 (340)
T d1x7da_         201 T  201 (340)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.08  E-value=0.00029  Score=52.90  Aligned_cols=74  Identities=11%  Similarity=0.140  Sum_probs=48.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      .+|+|.|+|.|.+|+.+|+.| .--|.+|..+||+... .++..+.++..    ............+++.+...|+++..
T Consensus         1 ~~K~IliiGaG~~G~~~a~~L-~~~g~~V~v~dr~~~~-a~~l~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~i~~   74 (182)
T d1e5qa1           1 ATKSVLMLGSGFVTRPTLDVL-TDSGIKVTVACRTLES-AKKLSAGVQHS----TPISLDVNDDAALDAEVAKHDLVISL   74 (182)
T ss_dssp             CCCEEEEECCSTTHHHHHHHH-HTTTCEEEEEESCHHH-HHHHHTTCTTE----EEEECCTTCHHHHHHHHTTSSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEECChHH-HHHHHhccccc----ccccccccchhhhHhhhhccceeEee
Confidence            378999999999999999999 5679999999999764 23322221100    00001111223567778888887753

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.04  E-value=0.001  Score=50.75  Aligned_cols=68  Identities=21%  Similarity=0.229  Sum_probs=44.6

Q ss_pred             EEEEEcCChHHHHHHHHHhccC-CcEEEEE-cCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--hCCEEEE
Q 026023          167 TVGVIGAGRIGSAYARMMVEGF-KMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVVCT  242 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~af-G~~V~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~sD~Vvl  242 (244)
                      ++||+|+|.+|+..++.+ +.. +++|.++ |+++.. ...+...+       +. ......+++++++++  +.|+|++
T Consensus         3 ki~iIG~G~~g~~~~~~l-~~~~~~~i~ai~d~~~~~-~~~~~~~~-------~~-~~~~~~~~~~~~ll~~~~iD~v~I   72 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAI-HLAPNATISGVASRSLEK-AKAFATAN-------NY-PESTKIHGSYESLLEDPEIDALYV   72 (184)
T ss_dssp             EEEEESCCTTHHHHHHHH-HHCTTEEEEEEECSSHHH-HHHHHHHT-------TC-CTTCEEESSHHHHHHCTTCCEEEE
T ss_pred             EEEEEcCCHHHHHHHHHH-HhCCCCEEEEEEeCCccc-cccchhcc-------cc-ccceeecCcHHHhhhccccceeee
Confidence            799999999999999998 555 7888854 666532 23322222       11 111223579999995  4678887


Q ss_pred             eC
Q 026023          243 LC  244 (244)
Q Consensus       243 ~~  244 (244)
                      ++
T Consensus        73 ~t   74 (184)
T d1ydwa1          73 PL   74 (184)
T ss_dssp             CC
T ss_pred             cc
Confidence            53

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.95  E-value=0.00088  Score=53.65  Aligned_cols=38  Identities=21%  Similarity=0.170  Sum_probs=33.3

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCC
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~  198 (244)
                      .++.|+||.|=|+|++|+.+|+.|++.+|++|++++.+
T Consensus        27 ~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~   64 (234)
T d1b26a1          27 IDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDS   64 (234)
T ss_dssp             CCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEET
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecC
Confidence            45899999999999999999999855789999987743

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.00033  Score=54.40  Aligned_cols=70  Identities=11%  Similarity=0.076  Sum_probs=48.9

Q ss_pred             CCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCC--CCccccccCCHHHHhhhCCEE
Q 026023          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE--QPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       164 ~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~ell~~sD~V  240 (244)
                      ..|+|.|+| .|.||+.+++.| ..-|.+|.++.|++....+.         ...+.  ........+++.+.++.+|+|
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~L-l~~g~~V~~~~R~~~~~~~~---------~~~~~~~~~gD~~d~~~l~~al~~~d~v   71 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQA-VQAGYEVTVLVRDSSRLPSE---------GPRPAHVVVGDVLQAADVDKTVAGQDAV   71 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCGGGSCSS---------SCCCSEEEESCTTSHHHHHHHHTTCSEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCcCEEEEEEcChhhcccc---------cccccccccccccchhhHHHHhcCCCEE
Confidence            457899999 799999999987 78899999999987542111         00111  111223335678889999998


Q ss_pred             EEe
Q 026023          241 CTL  243 (244)
Q Consensus       241 vl~  243 (244)
                      +.+
T Consensus        72 i~~   74 (205)
T d1hdoa_          72 IVL   74 (205)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            865

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.84  E-value=0.0011  Score=50.39  Aligned_cols=67  Identities=21%  Similarity=0.296  Sum_probs=52.1

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC  241 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv  241 (244)
                      -|++|+|+|+|||.-|.+=|.-| +=-|++|+.=-|...++++....           ..+   ...++.|..+.||+|.
T Consensus        13 ~ik~k~IaViGYGsQG~AhAlNL-rDSG~~V~VGLr~gs~s~~~A~~-----------~Gf---~v~~~~eA~~~aDiim   77 (182)
T d1np3a2          13 IIQGKKVAIIGYGSQGHAHACNL-KDSGVDVTVGLRSGSATVAKAEA-----------HGL---KVADVKTAVAAADVVM   77 (182)
T ss_dssp             HHHTSCEEEECCSHHHHHHHHHH-HHTTCCEEEECCTTCHHHHHHHH-----------TTC---EEECHHHHHHTCSEEE
T ss_pred             HHCCCEEEEEeeCcHhHHHHhhh-hhcCCCEEEEcCCCCccHHHHhh-----------hcc---ccccHHHHhhhcCeee
Confidence            47899999999999999999999 99999988877766554433111           111   2358999999999998


Q ss_pred             Ee
Q 026023          242 TL  243 (244)
Q Consensus       242 l~  243 (244)
                      +-
T Consensus        78 ~L   79 (182)
T d1np3a2          78 IL   79 (182)
T ss_dssp             EC
T ss_pred             ee
Confidence            74

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.84  E-value=0.0012  Score=49.07  Aligned_cols=76  Identities=22%  Similarity=0.315  Sum_probs=46.5

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhccCCc--EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       163 l~g~tvgIvG~G~IG~~vA~~la~afG~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      -.+++|+|+|.|.+|..+|-.| ...|.  ++..+|..+.....+..| +.. ........... .. +-.+.++.||+|
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l-~~~~l~~el~L~Di~~~~~~g~a~D-l~~-~~~~~~~~~~~-~~-~d~~~l~daDvv   78 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFAL-MNQGIADEIVLIDANESKAIGDAMD-FNH-GKVFAPKPVDI-WH-GDYDDCRDADLV   78 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHH-HHHTCCSEEEEECSSHHHHHHHHHH-HHH-HTTSSSSCCEE-EE-CCGGGTTTCSEE
T ss_pred             CCCCeEEEECcCHHHHHHHHHH-HhcCCCceEEEEeeccccccchhcc-Hhh-CccccCCCeEE-EE-CCHHHhccceeE
Confidence            4678999999999999999887 56555  799999876432111111 100 00011111111 22 334778999999


Q ss_pred             EEe
Q 026023          241 CTL  243 (244)
Q Consensus       241 vl~  243 (244)
                      +++
T Consensus        79 vit   81 (148)
T d1ldna1          79 VIC   81 (148)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            985

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=96.83  E-value=0.002  Score=48.42  Aligned_cols=76  Identities=16%  Similarity=0.239  Sum_probs=48.9

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCc--EEEEEcCCcchHHHHHHhh-hhhhhhcCCCCCccccccCCHHHHhhhCC
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTA-YGQFLKANGEQPVTWKRASSMDEVLREAD  238 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~--~V~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (244)
                      .+...+|+|+|.|++|..+|-.| ...|.  ++..+|........+..|- .++..  ..  ........+ .+-++.||
T Consensus        17 ~~~~~KV~IIGaG~VG~~~A~~l-~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~--~~--~~~~~~~~d-~~~~~~ad   90 (160)
T d1i0za1          17 TVPNNKITVVGVGQVGMACAISI-LGKSLADELALVDVLEDKLKGEMMDLQHGSLF--LQ--TPKIVADKD-YSVTANSK   90 (160)
T ss_dssp             CCCSSEEEEECCSHHHHHHHHHH-HHTTCCSEEEEECSCHHHHHHHHHHHHHTGGG--CC--CSEEEECSS-GGGGTTCS
T ss_pred             cCCCCeEEEECCCHHHHHHHHHH-HhcCCCcEEEEEEeccchhHHHHHHHhccccc--cC--CCeEEeccc-hhhccccc
Confidence            46678999999999999999997 67777  8999999864422222221 11100  01  111122233 56789999


Q ss_pred             EEEEe
Q 026023          239 VVCTL  243 (244)
Q Consensus       239 ~Vvl~  243 (244)
                      +|++.
T Consensus        91 iVVit   95 (160)
T d1i0za1          91 IVVVT   95 (160)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            99985

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=96.82  E-value=0.002  Score=48.67  Aligned_cols=55  Identities=15%  Similarity=0.115  Sum_probs=47.8

Q ss_pred             cccCCCEEEEEcCCh-HHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023          161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~-IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~  239 (244)
                      .++.||++.|+|-+. +|+-+|.+| ..-|++|..++.+.                            .++.+.+++||+
T Consensus        33 i~l~GK~v~VIGrS~~VG~Pla~lL-~~~gatVt~~h~~t----------------------------~~l~~~~~~ADi   83 (166)
T d1b0aa1          33 IDTFGLNAVVIGASNIVGRPMSMEL-LLAGCTTTVTHRFT----------------------------KNLRHHVENADL   83 (166)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHH-HTTTCEEEEECSSC----------------------------SCHHHHHHHCSE
T ss_pred             cccccceEEEEeccccccHHHHHHH-HHhhcccccccccc----------------------------chhHHHHhhhhH
Confidence            469999999999999 899999999 79999998887542                            378899999999


Q ss_pred             EEEeC
Q 026023          240 VCTLC  244 (244)
Q Consensus       240 Vvl~~  244 (244)
                      |+..+
T Consensus        84 vI~a~   88 (166)
T d1b0aa1          84 LIVAV   88 (166)
T ss_dssp             EEECS
T ss_pred             hhhhc
Confidence            99764

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=96.76  E-value=0.00093  Score=49.56  Aligned_cols=73  Identities=22%  Similarity=0.282  Sum_probs=43.8

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCc--EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      |+|+|+|.|++|..+|-.| ...|+  ++..+|........+..|-... .. ....... ....+ .+-++.||+|+++
T Consensus         2 kKI~IIGaG~VG~~~a~~l-~~~~~~~elvL~Di~~~~~~g~~~Dl~~a-~~-~~~~~~~-~~~~d-~~~l~~adiVVit   76 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGL-IAQGVADDYVFIDANEAKVKADQIDFQDA-MA-NLEAHGN-IVIND-WAALADADVVIST   76 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHHTCCSEEEEECSSHHHHHHHHHHHHHH-GG-GSSSCCE-EEESC-GGGGTTCSEEEEC
T ss_pred             CeEEEECcCHHHHHHHHHH-HhcCCCceEEEEecccchhhhHHHhhhcc-cc-ccCCccc-eeccC-HHHhccccEEEEe
Confidence            7899999999999999876 45554  8999998765322221111000 00 0111111 12234 4558999999986

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.73  E-value=0.0014  Score=50.25  Aligned_cols=39  Identities=21%  Similarity=0.171  Sum_probs=35.2

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .+...+|.|+|.|..|..-++. |+.+|++|..+|.++..
T Consensus        26 ~V~pa~VvViGaGvaG~~Aa~~-A~~lGA~V~v~D~~~~~   64 (183)
T d1l7da1          26 TVPPARVLVFGVGVAGLQAIAT-AKRLGAVVMATDVRAAT   64 (183)
T ss_dssp             EECCCEEEEECCSHHHHHHHHH-HHHTTCEEEEECSCSTT
T ss_pred             CcCCcEEEEEcCcHHHHHHHHH-HHHcCCEEEEEeccHHH
Confidence            4677899999999999999999 59999999999998754

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.73  E-value=0.001  Score=50.77  Aligned_cols=77  Identities=19%  Similarity=0.216  Sum_probs=42.9

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcC-CcchHHHHHHhhhh-----hhhhcCCC-CCccccccCCHHHHhhhCC
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDL-YQATRLEKFVTAYG-----QFLKANGE-QPVTWKRASSMDEVLREAD  238 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~l~ell~~sD  238 (244)
                      .+|||.|||+||+.+.|.+..-=+++|.+++. .+... ..+.-.++     ........ ...+.....++.+++..+|
T Consensus         3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vD   81 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFE-AYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVD   81 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHH-HHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCS
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHH-HHHhhhcCceeecccccceeeecccCccccchhhhhhccCC
Confidence            48999999999999999874445578776664 33322 11111111     00000000 0001112247888999999


Q ss_pred             EEEEe
Q 026023          239 VVCTL  243 (244)
Q Consensus       239 ~Vvl~  243 (244)
                      +|+=|
T Consensus        82 vViEc   86 (172)
T d2czca2          82 IIVDA   86 (172)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            98754

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.72  E-value=0.0015  Score=49.76  Aligned_cols=37  Identities=24%  Similarity=0.259  Sum_probs=33.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcch
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~  201 (244)
                      .|.+|.|+|.|.||...++.+ +.+|+ +|+++++++..
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~a-k~~Ga~~Vi~~~~~~~~   65 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIA-RSLGAENVIVIAGSPNR   65 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHH-HHTTBSEEEEEESCHHH
T ss_pred             CCCEEEEECCCccchhheecc-ccccccccccccccccc
Confidence            588999999999999999995 99999 79999998754

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.72  E-value=0.0037  Score=47.98  Aligned_cols=70  Identities=17%  Similarity=0.373  Sum_probs=44.8

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHH----------HHHHhhhhhhhhcCCCCCccccccCCHHHHhhh
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL----------EKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  236 (244)
                      +|+|+|+|.+|..+|..+  +.|.+|++||..++.-.          ++..+.+   ....   ........+..+...+
T Consensus         2 kI~ViGlG~vGl~~a~~~--a~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~---~~~~---~~~~~~~~~~~~~~~~   73 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLL--SLQNEVTIVDILPSKVDKINNGLSPIQDEYIEYY---LKSK---QLSIKATLDSKAAYKE   73 (196)
T ss_dssp             EEEEECCSHHHHHHHHHH--TTTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHH---HHHS---CCCEEEESCHHHHHHH
T ss_pred             EEEEECCChhHHHHHHHH--HCCCcEEEEECCHHHHHHHhhcccccchhhHHHH---hhhh---hhhhhccchhhhhhhc
Confidence            699999999999999876  46999999998864310          0111100   0000   0111223466677889


Q ss_pred             CCEEEEeC
Q 026023          237 ADVVCTLC  244 (244)
Q Consensus       237 sD~Vvl~~  244 (244)
                      +|++++++
T Consensus        74 ~~ii~v~v   81 (196)
T d1dlja2          74 AELVIIAT   81 (196)
T ss_dssp             CSEEEECC
T ss_pred             cccccccC
Confidence            99998864

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.69  E-value=0.0011  Score=49.05  Aligned_cols=74  Identities=18%  Similarity=0.205  Sum_probs=45.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCC--cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC  241 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv  241 (244)
                      ..++|+|+|.|++|..+|-.| ...|  -+|..+|+.......+..|-. ......   ........+.++ ++.||+|+
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l-~~~~~~~elvL~D~~~~~~~g~a~Dl~-~a~~~~---~~~~~~~~d~~~-~~~adivv   77 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAM-AQQGIAEEFVIVDVVKDRTKGDALDLE-DAQAFT---APKKIYSGEYSD-CKDADLVV   77 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHH-HHHTCCSEEEEECSSHHHHHHHHHHHH-GGGGGS---CCCEEEECCGGG-GTTCSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HhcCCCcEEEEeecccchhHHHHHHHh-cccccc---CCceEeeccHHH-hccccEEE
Confidence            456999999999999999887 4655  489999987643211111110 000001   111223345554 68999999


Q ss_pred             Ee
Q 026023          242 TL  243 (244)
Q Consensus       242 l~  243 (244)
                      ++
T Consensus        78 it   79 (146)
T d1ez4a1          78 IT   79 (146)
T ss_dssp             EC
T ss_pred             Ee
Confidence            85

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=96.66  E-value=0.0032  Score=47.82  Aligned_cols=66  Identities=17%  Similarity=0.240  Sum_probs=43.2

Q ss_pred             CEEEEEcCChHHHH-HHHHHhccCC--cEEEE-EcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhh--CCE
Q 026023          166 QTVGVIGAGRIGSA-YARMMVEGFK--MNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADV  239 (244)
Q Consensus       166 ~tvgIvG~G~IG~~-vA~~la~afG--~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--sD~  239 (244)
                      -++||||+|.+|+. .+..+ +.++  .+|.+ +|+++.. .+.+.+.|+       .    ...+.+++|+++.  .|+
T Consensus         4 irigiIG~G~~g~~~h~~~l-~~~~~~~~i~~v~d~~~~~-~~~~~~~~~-------~----~~~~~~~~ell~~~~id~   70 (181)
T d1zh8a1           4 IRLGIVGCGIAARELHLPAL-KNLSHLFEITAVTSRTRSH-AEEFAKMVG-------N----PAVFDSYEELLESGLVDA   70 (181)
T ss_dssp             EEEEEECCSHHHHHTHHHHH-HTTTTTEEEEEEECSSHHH-HHHHHHHHS-------S----CEEESCHHHHHHSSCCSE
T ss_pred             cEEEEEcCCHHHHHHHHHHH-HhCCCCeEEEEEEeccHhh-hhhhhcccc-------c----cceeeeeeccccccccce
Confidence            37999999999987 47776 5554  57664 5666533 344333331       1    1134799999975  678


Q ss_pred             EEEeC
Q 026023          240 VCTLC  244 (244)
Q Consensus       240 Vvl~~  244 (244)
                      |++++
T Consensus        71 v~I~t   75 (181)
T d1zh8a1          71 VDLTL   75 (181)
T ss_dssp             EEECC
T ss_pred             eeccc
Confidence            88763

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.65  E-value=0.0025  Score=47.81  Aligned_cols=76  Identities=14%  Similarity=0.043  Sum_probs=47.1

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCc--EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCc-cccccCCHHHHhhhCC
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLREAD  238 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~sD  238 (244)
                      .+...+|+|+|.|++|..+|-.| ...|.  ++..+|........+..|-.    ........ ......+ .+-++.||
T Consensus        16 ~~~~~KI~IIGaG~VG~~~A~~l-~~~~l~~elvL~D~~~~~a~g~alDl~----~~~~~~~~~~~~~~~d-~~~~~~ad   89 (159)
T d2ldxa1          16 KLSRCKITVVGVGDVGMACAISI-LLKGLADELALVDADTDKLRGEALDLQ----HGSLFLSTPKIVFGKD-YNVSANSK   89 (159)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHH-HTTTSCSEEEEECSCHHHHHHHHHHHH----HTTTTCSCCEEEEESS-GGGGTTEE
T ss_pred             cCCCCeEEEECCCHHHHHHHHHH-HhcCCCCEEEEEeCCchhhhccHHHHh----CcchhcCCCeEEeccc-hhhhcccc
Confidence            35666899999999999999987 67766  79999988643211111110    00001111 1223334 45569999


Q ss_pred             EEEEe
Q 026023          239 VVCTL  243 (244)
Q Consensus       239 ~Vvl~  243 (244)
                      +|++.
T Consensus        90 ivvit   94 (159)
T d2ldxa1          90 LVIIT   94 (159)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            99985

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.0025  Score=47.83  Aligned_cols=37  Identities=27%  Similarity=0.342  Sum_probs=33.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcch
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~  201 (244)
                      .|.+|.|+|.|.||...+..+ +.+|+ +|++.++++..
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a-~~~G~~~Vi~~d~~~~r   63 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVA-KAMGAAQVVVTDLSATR   63 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEEESCHHH
T ss_pred             CCCEEEEECCCccHHHHHHHH-HHcCCceEEeccCCHHH
Confidence            467999999999999999996 99999 79999998765

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.0029  Score=47.99  Aligned_cols=56  Identities=14%  Similarity=0.285  Sum_probs=48.1

Q ss_pred             ccccCCCEEEEEcCCh-HHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCC
Q 026023          160 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (244)
Q Consensus       160 ~~~l~g~tvgIvG~G~-IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (244)
                      +.+++||++.|+|-+. +|+-+|.+| ..-|++|..++.+.                            .++.+.+++||
T Consensus        34 ~i~l~Gk~vvVIGrS~iVGrPLa~lL-~~~gatVt~~~~~t----------------------------~~l~~~~~~aD   84 (170)
T d1a4ia1          34 GVPIAGRHAVVVGRSKIVGAPMHDLL-LWNNATVTTCHSKT----------------------------AHLDEEVNKGD   84 (170)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHH-HHTTCEEEEECTTC----------------------------SSHHHHHTTCS
T ss_pred             CcccccceEEEEecCCccchHHHHHH-HhccCceEEEeccc----------------------------ccHHHHHhhcc
Confidence            3579999999999988 899999999 78899999988653                            36888999999


Q ss_pred             EEEEeC
Q 026023          239 VVCTLC  244 (244)
Q Consensus       239 ~Vvl~~  244 (244)
                      +|+.++
T Consensus        85 ivi~a~   90 (170)
T d1a4ia1          85 ILVVAT   90 (170)
T ss_dssp             EEEECC
T ss_pred             chhhcc
Confidence            998753

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.63  E-value=0.0015  Score=47.04  Aligned_cols=34  Identities=18%  Similarity=0.368  Sum_probs=31.5

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +|.|+|+|++|+.+|+.| ...|..|+.+|..+..
T Consensus         2 ~IvI~G~G~~G~~la~~L-~~~g~~v~vid~d~~~   35 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSL-SEKGHDIVLIDIDKDI   35 (132)
T ss_dssp             EEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             EEEEECCCHHHHHHHHHH-HHCCCCcceecCChhh
Confidence            689999999999999999 8999999999998754

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=96.63  E-value=0.002  Score=50.79  Aligned_cols=71  Identities=14%  Similarity=0.229  Sum_probs=46.0

Q ss_pred             CCCEEEEEcCChHHHH-HHHHHhccC-CcEEE-EEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhh--CC
Q 026023          164 KGQTVGVIGAGRIGSA-YARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--AD  238 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~-vA~~la~af-G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--sD  238 (244)
                      +.-+|||||+|.+|+. ++..+ +.. +++|. .+|+++.. .+.+.+.|       +........+.+++|++..  .|
T Consensus        32 ~~iriaiIG~G~~~~~~~~~~~-~~~~~~~ivav~d~~~~~-a~~~~~~~-------~i~~~~~~~~~d~~ell~~~~iD  102 (221)
T d1h6da1          32 RRFGYAIVGLGKYALNQILPGF-AGCQHSRIEALVSGNAEK-AKIVAAEY-------GVDPRKIYDYSNFDKIAKDPKID  102 (221)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHT-TTCSSEEEEEEECSCHHH-HHHHHHHT-------TCCGGGEECSSSGGGGGGCTTCC
T ss_pred             CCEEEEEEcCcHHHHHHHHHHH-HhCCCceEEEEecCCHHH-HHHHHHhh-------ccccccccccCchhhhcccccce
Confidence            4469999999999974 66766 455 78877 55776543 34444433       2222223345789999974  67


Q ss_pred             EEEEe
Q 026023          239 VVCTL  243 (244)
Q Consensus       239 ~Vvl~  243 (244)
                      +|+++
T Consensus       103 ~V~I~  107 (221)
T d1h6da1         103 AVYII  107 (221)
T ss_dssp             EEEEC
T ss_pred             eeeec
Confidence            78775

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=96.61  E-value=0.0015  Score=49.67  Aligned_cols=33  Identities=21%  Similarity=0.286  Sum_probs=25.8

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCC
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~  198 (244)
                      ++|||-|||+||+.+.|.+...=+++|.+++..
T Consensus         2 ~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~   34 (171)
T d1cf2o1           2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKT   34 (171)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSSSEEEEEEEES
T ss_pred             eEEEEEcCcHHHHHHHHHHHhCCCceEEEEecC
Confidence            479999999999999998743334787776653

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=96.60  E-value=0.0026  Score=47.65  Aligned_cols=67  Identities=19%  Similarity=0.320  Sum_probs=43.5

Q ss_pred             CEEEEEcCChHHHH-HHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh-hCCEEEEe
Q 026023          166 QTVGVIGAGRIGSA-YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVVCTL  243 (244)
Q Consensus       166 ~tvgIvG~G~IG~~-vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~sD~Vvl~  243 (244)
                      .++||+|+|.+|+. ....+.+.-+..+.++|+++.. .+.+.+.|+       ..    ..+.+.++++. +.|+|+++
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~-~~~~~~~~~-------~~----~~~~~~~~ll~~~iD~V~I~   69 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKV-LGTLATRYR-------VS----ATCTDYRDVLQYGVDAVMIH   69 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHH-HHHHHHHTT-------CC----CCCSSTTGGGGGCCSEEEEC
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHH-HHHHHHhcc-------cc----cccccHHHhcccccceeccc
Confidence            37999999999976 5777633337788899987644 233333221       11    12357777775 56999886


Q ss_pred             C
Q 026023          244 C  244 (244)
Q Consensus       244 ~  244 (244)
                      +
T Consensus        70 t   70 (167)
T d1xeaa1          70 A   70 (167)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=96.56  E-value=0.0021  Score=48.99  Aligned_cols=81  Identities=15%  Similarity=0.115  Sum_probs=51.2

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchH--HHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhC
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s  237 (244)
                      .++.|++|.|+|.|..|++++..| ...|+ ++..++|+++..  .....+.++.-... ...........++.+.+.++
T Consensus        14 ~~l~~k~vlIlGaGGaarai~~al-~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   91 (182)
T d1vi2a1          14 FDIKGKTMVLLGAGGASTAIGAQG-AIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDC-VVTVTDLADQQAFAEALASA   91 (182)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSC-EEEEEETTCHHHHHHHHHTC
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHH-hhcCCceEeeeccchHHHHHHHHHHHHHHhhcCc-ceEeeecccccchhhhhccc
Confidence            468999999999999999999998 67888 688999986531  12222211110000 00001111223466778999


Q ss_pred             CEEEEe
Q 026023          238 DVVCTL  243 (244)
Q Consensus       238 D~Vvl~  243 (244)
                      |+|+.+
T Consensus        92 diiIN~   97 (182)
T d1vi2a1          92 DILTNG   97 (182)
T ss_dssp             SEEEEC
T ss_pred             ceeccc
Confidence            999875

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=96.56  E-value=0.0012  Score=53.15  Aligned_cols=36  Identities=25%  Similarity=0.334  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCC
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~  198 (244)
                      +|.|+||.|=|||++|+.+|+.| ...|++|++++.+
T Consensus        28 ~l~g~~v~IqGfGnVG~~~a~~L-~~~Gakvv~vsD~   63 (242)
T d1v9la1          28 GIEGKTVAIQGMGNVGRWTAYWL-EKMGAKVIAVSDI   63 (242)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HTTTCEEEEEECS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHH-HHcCCeEEEeecc
Confidence            58999999999999999999998 8999999988754

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=96.54  E-value=0.0018  Score=48.87  Aligned_cols=40  Identities=13%  Similarity=0.099  Sum_probs=36.2

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .++.||+|.|+|.|-.+++++--| ...|++|..++|+...
T Consensus        14 ~~~~~k~vlIlGaGGaarai~~al-~~~g~~i~I~nRt~~k   53 (170)
T d1nyta1          14 FIRPGLRILLIGAGGASRGVLLPL-LSLDCAVTITNRTVSR   53 (170)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSHHH
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHh-cccceEEEeccchHHH
Confidence            457899999999999999999998 7899999999999754

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=96.54  E-value=0.0021  Score=47.23  Aligned_cols=72  Identities=17%  Similarity=0.204  Sum_probs=40.8

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCc--EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      ++|+|+|.|++|..+|-.+ ...|.  ++..+|........+..|-     ...............-.+-++.||+|+++
T Consensus         2 ~KI~IIGaG~VG~~~a~~l-~~~~l~~el~L~D~~~~~~~g~a~Dl-----~~~~~~~~~~~~~~~~~~~~~~adivvit   75 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTM-ALRQTANELVLIDVFKEKAIGEAMDI-----NHGLPFMGQMSLYAGDYSDVKDCDVIVVT   75 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHH-HHTTCSSEEEEECCC---CCHHHHHH-----TTSCCCTTCEEEC--CGGGGTTCSEEEEC
T ss_pred             CeEEEECCCHHHHHHHHHH-HhcCCCCEEEEEeccCCccceeeeee-----ccCcccCCCeeEeeCcHHHhCCCceEEEe
Confidence            4799999999999999776 45554  8999998764311111110     00001000111122335668999999986

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.51  E-value=0.0011  Score=50.36  Aligned_cols=77  Identities=18%  Similarity=0.160  Sum_probs=51.8

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      .++.||+|.|+|.|..+++++-.| ...| +|..++|++.. .++..+.+....   ...........+++..+..+|+|
T Consensus        14 ~~~~~k~vlIlGaGG~arai~~aL-~~~~-~i~I~nR~~~k-a~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~dli   87 (177)
T d1nvta1          14 GRVKDKNIVIYGAGGAARAVAFEL-AKDN-NIIIANRTVEK-AEALAKEIAEKL---NKKFGEEVKFSGLDVDLDGVDII   87 (177)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHH-TSSS-EEEEECSSHHH-HHHHHHHHHHHH---TCCHHHHEEEECTTCCCTTCCEE
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHH-cccc-ceeeehhhhhH-HHHHHHHHHHhh---chhhhhhhhhhhhhhccchhhhh
Confidence            358999999999999999999998 6788 99999999754 233332221111   11111122345677778888988


Q ss_pred             EEe
Q 026023          241 CTL  243 (244)
Q Consensus       241 vl~  243 (244)
                      +.+
T Consensus        88 In~   90 (177)
T d1nvta1          88 INA   90 (177)
T ss_dssp             EEC
T ss_pred             ccC
Confidence            765

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.51  E-value=0.0031  Score=46.28  Aligned_cols=73  Identities=16%  Similarity=0.277  Sum_probs=44.3

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhh-hhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTA-YGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      ++|+|+|.|++|..+|-.| ..-+. .++.+|...........+. .......   ....+....+.+ -+++||+|+++
T Consensus         2 ~KI~IIGaG~VG~~~A~~l-~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~---~~~~i~~~~d~~-~~~~advvvit   76 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWL-AAKELGDIVLLDIVEGVPQGKALDLYEASPIEG---FDVRVTGTNNYA-DTANSDVIVVT   76 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHT---CCCCEEEESCGG-GGTTCSEEEEC
T ss_pred             CeEEEECCCHHHHHHHHHH-HhCCcceEEEEeeccccchhHHHHhhccccccC---CCCEEEecCcHH-HhcCCCEEEEe
Confidence            5899999999999999877 34444 8999998765422222221 1110000   111222234555 46899999986

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.49  E-value=0.0011  Score=49.76  Aligned_cols=34  Identities=15%  Similarity=0.317  Sum_probs=31.0

Q ss_pred             EEEEE-cCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          167 TVGVI-GAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       167 tvgIv-G~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ||+|+ |.|.||+.+|+.| ..-|.+|..++|++.+
T Consensus         2 ki~vigGaG~iG~alA~~l-a~~G~~V~l~~R~~e~   36 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRL-ATLGHEIVVGSRREEK   36 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHH-HTTTCEEEEEESSHHH
T ss_pred             EEEEEeCCcHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            79999 8999999999999 6999999999998653

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.44  E-value=0.0013  Score=48.52  Aligned_cols=44  Identities=16%  Similarity=0.148  Sum_probs=38.1

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHH
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK  205 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~  205 (244)
                      ..|.||+|.|+|.|.+|.+-|+.| ..+|++|+.++|...++...
T Consensus         9 ~~l~gkrvLViGgG~va~~ka~~L-l~~GA~VtVvap~~~~~l~~   52 (150)
T d1kyqa1           9 HQLKDKRILLIGGGEVGLTRLYKL-MPTGCKLTLVSPDLHKSIIP   52 (150)
T ss_dssp             ECCTTCEEEEEEESHHHHHHHHHH-GGGTCEEEEEEEEECTTHHH
T ss_pred             eeeCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCCCHHHHH
Confidence            469999999999999999999998 89999999998866554443

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.44  E-value=0.0014  Score=49.19  Aligned_cols=37  Identities=22%  Similarity=0.494  Sum_probs=33.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .|.+|.|+|.|.||...++.+ +++|+++++++++...
T Consensus        30 ~G~~VlI~GaG~vG~~a~qla-k~~Ga~~i~~~~~~~~   66 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLA-HAMGAHVVAFTTSEAK   66 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSGGG
T ss_pred             CCCEEEEeccchHHHHHHHHh-hcccccchhhccchhH
Confidence            578999999999999999995 9999999999988764

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.43  E-value=0.0038  Score=45.93  Aligned_cols=71  Identities=18%  Similarity=0.354  Sum_probs=45.9

Q ss_pred             CEEEEEc-CChHHHHHHHHHhccCCc--EEEEEcCCcchHHHHHHhhhhhhhhcCCCCC-ccccccCCHHHHhhhCCEEE
Q 026023          166 QTVGVIG-AGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQP-VTWKRASSMDEVLREADVVC  241 (244)
Q Consensus       166 ~tvgIvG-~G~IG~~vA~~la~afG~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ell~~sD~Vv  241 (244)
                      .+|+|+| .|++|+.+|-.| ..-|.  ++..+|...........+.-      ..... .......+..|.++.||+|+
T Consensus         1 sKv~IiGA~G~VG~~~A~~l-~~~~~~~elvLiDi~~~~~~a~Dl~~~------~~~~~~~~~~~~~~~~~~~~~aDivV   73 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLL-KNSPLVSRLTLYDIAHTPGVAADLSHI------ETRATVKGYLGPEQLPDCLKGCDVVV   73 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHH-HTCTTCSEEEEEESSSHHHHHHHHTTS------SSSCEEEEEESGGGHHHHHTTCSEEE
T ss_pred             CeEEEECCCChHHHHHHHHH-HhCCccceEEEEeccccchhhHHHhhh------hhhcCCCeEEcCCChHHHhCCCCEEE
Confidence            3799999 599999999998 66666  68899986533211111110      00000 11223457789999999999


Q ss_pred             Ee
Q 026023          242 TL  243 (244)
Q Consensus       242 l~  243 (244)
                      +.
T Consensus        74 it   75 (144)
T d1mlda1          74 IP   75 (144)
T ss_dssp             EC
T ss_pred             EC
Confidence            85

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=96.42  E-value=0.0033  Score=46.01  Aligned_cols=73  Identities=21%  Similarity=0.234  Sum_probs=45.3

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCc--EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      +|+|+|.|++|..+|-.| ...|.  ++..+|........+..+...  ............. .+-.+.+++||+|+++
T Consensus         2 KI~IIGaG~VG~~la~~l-~~~~l~~el~L~Di~~~~~~~~~~d~~~--~~~~~~~~~~i~~-~~~~~~~~dadvvvit   76 (142)
T d1guza1           2 KITVIGAGNVGATTAFRL-AEKQLARELVLLDVVEGIPQGKALDMYE--SGPVGLFDTKVTG-SNDYADTANSDIVIIT   76 (142)
T ss_dssp             EEEEECCSHHHHHHHHHH-HHTTCCSEEEEECSSSSHHHHHHHHHHT--THHHHTCCCEEEE-ESCGGGGTTCSEEEEC
T ss_pred             EEEEECcCHHHHHHHHHH-HhCCCCceEEEeccccccchhhhhhhhc--ccchhcccceEEe-cCCHHHhcCCeEEEEE
Confidence            699999999999999987 56664  899999887542222122100  0000011112222 2446678999999986

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.41  E-value=0.0046  Score=49.42  Aligned_cols=37  Identities=32%  Similarity=0.506  Sum_probs=32.9

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCC
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~  198 (244)
                      +|.|+||.|-|||++|+.+|+.|++.+|++|++++-+
T Consensus        29 ~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~   65 (239)
T d1gtma1          29 TLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDS   65 (239)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHhcCcceeecccc
Confidence            4999999999999999999998755799999988654

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.39  E-value=0.006  Score=42.55  Aligned_cols=62  Identities=11%  Similarity=0.136  Sum_probs=46.9

Q ss_pred             CCEEEEEcC----------ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh
Q 026023          165 GQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL  234 (244)
Q Consensus       165 g~tvgIvG~----------G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell  234 (244)
                      .++|||+|+          ..-.-.+.+.| +-.|++|.+|||......                .........++++++
T Consensus        15 ~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L-~~~g~~v~iyDP~v~~~~----------------~~~~~~~~~~l~~~~   77 (108)
T d1dlja3          15 VKVVGVYRLIMKSNSDNFRESAIKDVIDIL-KSKDIKIIIYEPMLNKLE----------------SEDQSVLVNDLENFK   77 (108)
T ss_dssp             SCEEEEECCCSSTTCSCCTTCHHHHHHHHH-HTSSCEEEEECTTCSCCC----------------TTCCSEECCCHHHHH
T ss_pred             CCEEEEEEEEECCCCcchhhhhHHHHHHHH-hccccceeeecCCcChhH----------------hccCCEEEeCHHHHH
Confidence            369999997          46678899998 899999999999875410                011122346899999


Q ss_pred             hhCCEEEEe
Q 026023          235 READVVCTL  243 (244)
Q Consensus       235 ~~sD~Vvl~  243 (244)
                      ..||+|+++
T Consensus        78 ~~sDiII~~   86 (108)
T d1dlja3          78 KQANIIVTN   86 (108)
T ss_dssp             HHCSEEECS
T ss_pred             hhCCEEEEc
Confidence            999988753

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.36  E-value=0.0045  Score=50.89  Aligned_cols=37  Identities=19%  Similarity=0.214  Sum_probs=33.7

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCC
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~  198 (244)
                      .+|.|+||.|=|||++|+.+|+.| ...|++|++++.+
T Consensus        32 ~~L~gktvaIqGfGnVG~~~A~~L-~e~Gakvv~vsD~   68 (293)
T d1hwxa1          32 PGFGDKTFAVQGFGNVGLHSMRYL-HRFGAKCVAVGES   68 (293)
T ss_dssp             SSSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEEET
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcc
Confidence            469999999999999999999998 8999999988753

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.31  E-value=0.0021  Score=52.13  Aligned_cols=46  Identities=20%  Similarity=0.154  Sum_probs=38.2

Q ss_pred             cccccCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcchHHHH
Q 026023          159 VGNLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK  205 (244)
Q Consensus       159 ~~~~l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~  205 (244)
                      ...+|.||++.|-| .+.||+++|+.| ..-|++|+..+++..+..++
T Consensus        12 ~~~sL~gK~~lITGas~GIG~aia~~l-a~~Ga~Vvi~~~~~~~~~~~   58 (272)
T d1g0oa_          12 QSASLEGKVALVTGAGRGIGREMAMEL-GRRGCKVIVNYANSTESAEE   58 (272)
T ss_dssp             GGGCCTTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESSCHHHHHH
T ss_pred             CCcCCCCCEEEEeCCCCHHHHHHHHHH-HHcCCEEEEEeCCchHHHHH
Confidence            45679999999998 678999999999 68999999998876554443

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=96.30  E-value=0.0036  Score=46.03  Aligned_cols=73  Identities=22%  Similarity=0.304  Sum_probs=44.1

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCc--EEEEEcCCcchHHHHHHh-hhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVT-AYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~--~V~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      .+|+|+|.|++|..+|-.+ ..-|.  ++..+|..+.....+..| ..++  ....  ........+. +.++.||+|++
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l-~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~--~~~~--~~~i~~~~~~-~~~~daDvVVi   75 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAA-AQRGIAREIVLEDIAKERVEAEVLDMQHGS--SFYP--TVSIDGSDDP-EICRDADMVVI   75 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCCSEEEEECSSHHHHHHHHHHHHHTG--GGST--TCEEEEESCG-GGGTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHH-HhcCCCcEEEEEEeccccchhHHHHHHhcc--ccCC--CceeecCCCH-HHhhCCcEEEE
Confidence            4799999999999998665 44454  899999886432211111 1100  0011  1222233454 45899999998


Q ss_pred             eC
Q 026023          243 LC  244 (244)
Q Consensus       243 ~~  244 (244)
                      +.
T Consensus        76 ta   77 (143)
T d1llda1          76 TA   77 (143)
T ss_dssp             CC
T ss_pred             ec
Confidence            63

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.20  E-value=0.0018  Score=48.59  Aligned_cols=37  Identities=22%  Similarity=0.336  Sum_probs=33.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .|.+|.|+|.|.+|...++.+ +.+|++|+++++++..
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~a-k~~G~~vi~~~~~~~k   63 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLIS-KAMGAETYVISRSSRK   63 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHTCEEEEEESSSTT
T ss_pred             CCCEEEEECCCCcchhHHHHh-hhccccccccccchhH
Confidence            678999999999999999995 9999999999998754

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.20  E-value=0.0011  Score=51.02  Aligned_cols=35  Identities=20%  Similarity=0.313  Sum_probs=31.5

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ++|+|+|.|.+|..+|..+ ...|++|..||+++..
T Consensus         5 ~~vaViGaG~mG~~iA~~~-a~~G~~V~l~D~~~~~   39 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQS-ASKGTPILMKDINEHG   39 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHH-HHTTCCEEEECSSHHH
T ss_pred             CEEEEECcCHHHHHHHHHH-HhCCCeEEEEECCHHH
Confidence            4799999999999999997 5889999999998754

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.15  E-value=0.0078  Score=44.25  Aligned_cols=33  Identities=33%  Similarity=0.507  Sum_probs=28.3

Q ss_pred             EEEEEcC-ChHHHHHHHHHhccCCc--EEEEEcCCcc
Q 026023          167 TVGVIGA-GRIGSAYARMMVEGFKM--NLIYYDLYQA  200 (244)
Q Consensus       167 tvgIvG~-G~IG~~vA~~la~afG~--~V~~~~~~~~  200 (244)
                      +|+|+|. |++|+.+|-.| ...|.  ++..+|..+.
T Consensus         2 KV~IiGA~G~VG~~~a~~l-~~~~l~~el~L~D~~~~   37 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLL-AKEPFMKDLVLIGREHS   37 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHH-HTCTTCCEEEEEECGGG
T ss_pred             EEEEECCCChHHHHHHHHH-HhCCcccccccccchhh
Confidence            6999995 99999999998 67775  8999998753

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=96.13  E-value=0.0071  Score=47.41  Aligned_cols=72  Identities=22%  Similarity=0.199  Sum_probs=46.3

Q ss_pred             ccCC-CEEEEEcCChHHHHHHHHHhcc------CCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh
Q 026023          162 LLKG-QTVGVIGAGRIGSAYARMMVEG------FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL  234 (244)
Q Consensus       162 ~l~g-~tvgIvG~G~IG~~vA~~la~a------fG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell  234 (244)
                      -+.| |+|+|+|||.-|.+=|.-| +=      -|.+|.+-=|...+.++...        ..+-..... ...+..|..
T Consensus        40 ~~kg~KkIaViGYGsQG~AhAlNL-rDSG~~~~sgv~V~VGLr~gs~S~~kA~--------~dGf~v~~~-~v~~v~EAv  109 (226)
T d1qmga2          40 AFKGIKQIGVIGWGSQAPAQAQNL-KDSLTEAKSDVVVKIGLRKGSNSFAEAR--------AAGFSEENG-TLGDMWETI  109 (226)
T ss_dssp             HTTTCSEEEEECCSSHHHHHHHHH-HHHHHHTTCCCEEEEEECTTCSCHHHHH--------HTTCCGGGT-CEEEHHHHH
T ss_pred             HhcCCCEEEEEEeccHHHHHHHhC-hhhcccccCCceEEEEeCCCChhHHHHH--------HcCCccCCC-cccCHHHHH
Confidence            3688 9999999999999999998 76      66776555444333222211        011111111 123788999


Q ss_pred             hhCCEEEEe
Q 026023          235 READVVCTL  243 (244)
Q Consensus       235 ~~sD~Vvl~  243 (244)
                      +.||+|.+.
T Consensus       110 ~~ADiVmiL  118 (226)
T d1qmga2         110 SGSDLVLLL  118 (226)
T ss_dssp             HTCSEEEEC
T ss_pred             hhCCEEEEe
Confidence            999999874

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.06  E-value=0.0083  Score=44.35  Aligned_cols=73  Identities=18%  Similarity=0.246  Sum_probs=44.6

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHh--hhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVT--AYGQFLKANGEQPVTWKRASSMDEVLREADVVC  241 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv  241 (244)
                      ..+|+|+|.|.+|+.+|-.| ..-++ ++..+|..+.....+..+  ...++.    .....+.. .+-.+-++.||+|+
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l-~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~----~~~~~v~~-~~~~~~~~~advvv   76 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLI-VQKNLGDVVLFDIVKNMPHGKALDTSHTNVMA----YSNCKVSG-SNTYDDLAGADVVI   76 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHH-HHTTCCEEEEECSSSSHHHHHHHHHHTHHHHH----TCCCCEEE-ECCGGGGTTCSEEE
T ss_pred             CCeEEEECCCHHHHHHHHHH-HhCCCCeEEEEeccCCcceeeecchhhhcccc----CCCcEEEe-cccccccCCCcEEE
Confidence            35899999999999999876 44454 899999876432211111  110100    01111211 24557779999999


Q ss_pred             Ee
Q 026023          242 TL  243 (244)
Q Consensus       242 l~  243 (244)
                      ++
T Consensus        77 it   78 (150)
T d1t2da1          77 VT   78 (150)
T ss_dssp             EC
T ss_pred             Ee
Confidence            86

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.05  E-value=0.0082  Score=45.29  Aligned_cols=37  Identities=22%  Similarity=0.110  Sum_probs=32.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcch
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~  201 (244)
                      .|.+|.|+|.|.||...++.+ +.+|+ +|++.+++...
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~a-k~~Ga~~Vi~~d~~~~r   64 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGA-KLRGAGRIIGVGSRPIC   64 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHH-HTTTCSCEEEECCCHHH
T ss_pred             CCCEEEEEcCCcchhhhhhhh-hcccccccccccchhhh
Confidence            577999999999999999995 99998 69999998654

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.03  E-value=0.003  Score=47.24  Aligned_cols=37  Identities=27%  Similarity=0.275  Sum_probs=33.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .|.+|.|+|.|.||...++.+ +.+|++|+++++++..
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~a-k~~Ga~vi~v~~~~~r   62 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAA-KAYGAFVVCTARSPRR   62 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCEEEEEcccccchhhHhhH-hhhcccccccchHHHH
Confidence            567999999999999999995 9999999999998754

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.97  E-value=0.0047  Score=43.65  Aligned_cols=35  Identities=11%  Similarity=0.368  Sum_probs=32.1

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      .++|.|+|.|.||-++|..| ..+|.+|..+.+..+
T Consensus        22 p~~v~IiGgG~iG~E~A~~l-~~~g~~Vtlv~~~~~   56 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVI-KRLGIDSYIFARGNR   56 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHH-HTTTCEEEEECSSSS
T ss_pred             CCEEEEECCchHHHHHHHHH-Hhccccceeeehhcc
Confidence            47899999999999999998 899999999998754

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=95.94  E-value=0.0033  Score=50.80  Aligned_cols=43  Identities=16%  Similarity=0.188  Sum_probs=35.8

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcchHHH
Q 026023          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLE  204 (244)
Q Consensus       161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~~~~  204 (244)
                      ++|.||++.|-|. +.||+++|+.| ..-|++|+..+|+..+..+
T Consensus         3 ~dL~gK~alITGas~GIG~aia~~l-a~~G~~Vv~~~r~~~~~~~   46 (261)
T d1geea_           3 KDLEGKVVVITGSSTGLGKSMAIRF-ATEKAKVVVNYRSKEDEAN   46 (261)
T ss_dssp             GGGTTCEEEETTCSSHHHHHHHHHH-HHTTCEEEEEESSCHHHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCcHHHHH
Confidence            3699999999985 66999999999 6899999999998654333

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.92  E-value=0.0059  Score=44.21  Aligned_cols=74  Identities=20%  Similarity=0.205  Sum_probs=51.1

Q ss_pred             ccCCCEEEEEcC----------ChHHHHHHHHHhccCCcEEEEEcCCcchHH-----HHHHhhhhhhhhcCCCCCccccc
Q 026023          162 LLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRL-----EKFVTAYGQFLKANGEQPVTWKR  226 (244)
Q Consensus       162 ~l~g~tvgIvG~----------G~IG~~vA~~la~afG~~V~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  226 (244)
                      ++.+++|||+|+          +.=...+++.| ...|++|.+|||......     .++...        .........
T Consensus        10 ~~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L-~~~g~~V~~~DP~v~~~~~~~~~~~~~~~--------~~~~~~~~~   80 (136)
T d1mv8a3          10 SHDTRKVGLLGLSFKAGTDDLRESPLVELAEML-IGKGYELRIFDRNVEYARVHGANKEYIES--------KIPHVSSLL   80 (136)
T ss_dssp             TSSCCEEEEECCSSSTTCCCCTTCHHHHHHHHH-HHTTCEEEEECHHHHHHTTSSSCHHHHHH--------TSHHHHTTB
T ss_pred             hcCCCEEEEEEEEECCCCcchhcCHHHHHHHHH-hhhhccccccCCCCCHHHHhhhhhhhhhh--------cccccccee
Confidence            367889999998          46788899999 899999999999653210     010000        000111224


Q ss_pred             cCCHHHHhhhCCEEEEeC
Q 026023          227 ASSMDEVLREADVVCTLC  244 (244)
Q Consensus       227 ~~~l~ell~~sD~Vvl~~  244 (244)
                      .+++++.+..||+|++++
T Consensus        81 ~~~~~e~i~~~D~ivi~t   98 (136)
T d1mv8a3          81 VSDLDEVVASSDVLVLGN   98 (136)
T ss_dssp             CSCHHHHHHHCSEEEECS
T ss_pred             ehhhhhhhhhceEEEEEe
Confidence            579999999999999864

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.89  E-value=0.0038  Score=46.50  Aligned_cols=37  Identities=22%  Similarity=0.373  Sum_probs=33.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .|++|.|+|.|.||...++.+ +.+|++|+++++++..
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~a-k~~G~~Vi~~~~~~~~   63 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYA-RAMGLHVAAIDIDDAK   63 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCEEEEeeccccHHHHHHHH-HHcCCccceecchhhH
Confidence            578999999999999999995 9999999999998654

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.89  E-value=0.0043  Score=45.37  Aligned_cols=71  Identities=23%  Similarity=0.326  Sum_probs=42.8

Q ss_pred             EEEEEcCChHHHHHHHHH-hccCCcEEEEEcCCcchHHHHHHhh-hhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          167 TVGVIGAGRIGSAYARMM-VEGFKMNLIYYDLYQATRLEKFVTA-YGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~l-a~afG~~V~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      +|+|+|.|++|..+|-.+ .+.+.-++..+|........+..+. .+..   . .... .....+ .+-++.||+|+++
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~---~-~~~~-~~~~~~-~~~~~~adivvit   74 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTP---F-TRRA-NIYAGD-YADLKGSDVVIVA   74 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGG---G-SCCC-EEEECC-GGGGTTCSEEEEC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhcccccccc---c-cccc-cccCCc-HHHhcCCCEEEEe
Confidence            799999999999998754 1344458999998764322222221 1110   0 1111 112233 5568999999986

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=95.89  E-value=0.0073  Score=44.70  Aligned_cols=72  Identities=17%  Similarity=0.332  Sum_probs=51.3

Q ss_pred             cCCCEEEEEcC---ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023          163 LKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (244)
Q Consensus       163 l~g~tvgIvG~---G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~  239 (244)
                      |.|++|+++|=   +++..+++..+ ..||+++..+.|..-...++....    ....   ........++++.++.+|+
T Consensus         2 l~gl~i~~vGD~~~srV~~Sli~~~-~~~g~~~~~~~P~~~~~~~~~~~~----~~~~---~~~~~~~~d~~~av~~aDv   73 (157)
T d1ml4a2           2 IDGLKIGLLGDLKYGRTVHSLAEAL-TFYDVELYLISPELLRMPRHIVEE----LREK---GMKVVETTTLEDVIGKLDV   73 (157)
T ss_dssp             SSSEEEEEESCTTTCHHHHHHHHHG-GGSCEEEEEECCGGGCCCHHHHHH----HHHT---TCCEEEESCTHHHHTTCSE
T ss_pred             cCCCEEEEEcCCccChHHHHHHHHH-HhcCCcEEEEccchhhcchHHHHH----HHhh---cccceeecCHHHhhccCcE
Confidence            68999999998   68999999997 899999999998653322222111    1111   1223345799999999999


Q ss_pred             EEE
Q 026023          240 VCT  242 (244)
Q Consensus       240 Vvl  242 (244)
                      |..
T Consensus        74 vy~   76 (157)
T d1ml4a2          74 LYV   76 (157)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            864

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.84  E-value=0.0018  Score=49.23  Aligned_cols=82  Identities=18%  Similarity=0.168  Sum_probs=50.9

Q ss_pred             cccccCCCEEEEEcCChH-HHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhC
Q 026023          159 VGNLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (244)
Q Consensus       159 ~~~~l~g~tvgIvG~G~I-G~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s  237 (244)
                      .+.++.||++.|+|-++| |+-+|.+| ..-|+.|.-++...........+   ......+...++....+.+++...++
T Consensus        23 ~g~~l~GK~vvVIGrS~iVG~Pla~lL-~~~gaTVt~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~lk~~~~~a   98 (171)
T d1edza1          23 EGNRLYGKKCIVINRSEIVGRPLAALL-ANDGATVYSVDVNNIQKFTRGES---LKLNKHHVEDLGEYSEDLLKKCSLDS   98 (171)
T ss_dssp             TTCTTTTCEEEEECCCTTTHHHHHHHH-HTTSCEEEEECSSEEEEEESCCC---SSCCCCEEEEEEECCHHHHHHHHHHC
T ss_pred             ccCCCCCCEEEEECCccccHHHHHHHH-HHCCCEEEEeccccccccccccc---eeeeeeccccccccchhHHhhccccC
Confidence            456899999999999986 99999999 78999999888654321000000   00000000001111113488889999


Q ss_pred             CEEEEeC
Q 026023          238 DVVCTLC  244 (244)
Q Consensus       238 D~Vvl~~  244 (244)
                      |+|+..+
T Consensus        99 DIvIsav  105 (171)
T d1edza1          99 DVVITGV  105 (171)
T ss_dssp             SEEEECC
T ss_pred             CEEEEcc
Confidence            9998753

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.82  E-value=0.018  Score=42.20  Aligned_cols=71  Identities=27%  Similarity=0.254  Sum_probs=43.3

Q ss_pred             EEEEEc-CChHHHHHHHHHh-c-cCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCC-CCccccccCCHHHHhhhCCEEEE
Q 026023          167 TVGVIG-AGRIGSAYARMMV-E-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE-QPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       167 tvgIvG-~G~IG~~vA~~la-~-afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      +|+|+| .|++|+.+|-.|+ + .++-++..+|..+..+ .+..|-     ..... .........+..+.++.||+|++
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~-g~a~Dl-----~h~~~~~~~~~~~~~~~~~~~~~aDvvvi   75 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTP-GVAVDL-----SHIPTAVKIKGFSGEDATPALEGADVVLI   75 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHH-HHHHHH-----HTSCSSCEEEEECSSCCHHHHTTCSEEEE
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccch-hHHHHH-----HCCccccCCcEEEcCCCccccCCCCEEEE
Confidence            799999 5999999998753 2 5678999999865332 111121     01111 11111112344567999999998


Q ss_pred             e
Q 026023          243 L  243 (244)
Q Consensus       243 ~  243 (244)
                      +
T Consensus        76 t   76 (145)
T d2cmda1          76 S   76 (145)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.82  E-value=0.0061  Score=48.66  Aligned_cols=40  Identities=28%  Similarity=0.450  Sum_probs=35.9

Q ss_pred             cccCCCEEEEEcCCh-HHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~-IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .+|.||++.|-|.+. ||+++|+.| ..-|++|+..+|+...
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~l-a~~G~~V~l~~r~~~~   43 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEF-AKLKSKLVLWDINKHG   43 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            469999999999877 999999999 6999999999998753

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.80  E-value=0.012  Score=43.70  Aligned_cols=76  Identities=21%  Similarity=0.249  Sum_probs=49.4

Q ss_pred             cCCCEEEEEcC--ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          163 LKGQTVGVIGA--GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       163 l~g~tvgIvG~--G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      |.|++|.+||=  .++..+++..+ .-||+++..+.|..-...++............   ...+....++++.++.+|+|
T Consensus         1 l~g~ki~~vGD~~nnV~~Sli~~~-~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~---~~~i~~~~d~~~ai~~aDvi   76 (161)
T d1vlva2           1 LKGVKVVFMGDTRNNVATSLMIAC-AKMGMNFVACGPEELKPRSDVFKRCQEIVKET---DGSVSFTSNLEEALAGADVV   76 (161)
T ss_dssp             STTCEEEEESCTTSHHHHHHHHHH-HHTTCEEEEESCGGGCCCHHHHHHHHHHHHHH---CCEEEEESCHHHHHTTCSEE
T ss_pred             CCCCEEEEEcCCccHHHHHHHHHH-HHcCCEEEEecchhhhhhhhHHHHHHHHHhhc---CCceEEEecHHHhhhhhhhe
Confidence            67999999993  58999999997 78999999999864211111110000000000   11233457899999999998


Q ss_pred             EE
Q 026023          241 CT  242 (244)
Q Consensus       241 vl  242 (244)
                      ..
T Consensus        77 yt   78 (161)
T d1vlva2          77 YT   78 (161)
T ss_dssp             EE
T ss_pred             ec
Confidence            64

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=95.76  E-value=0.0057  Score=49.81  Aligned_cols=56  Identities=7%  Similarity=0.211  Sum_probs=42.4

Q ss_pred             HHcCCCCCCCCCcccccccCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          145 MRAGLYDGWLPNLFVGNLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       145 ~~~~~w~~~~~~~~~~~~l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +++..|....+......+|+||++.|-| .|.||+++|+.| ..-|++|+..+|+...
T Consensus         5 ~~~~~~~~~~~~~~~~~~l~gK~alITGas~GIG~aiA~~l-a~~Ga~Vii~~r~~~~   61 (294)
T d1w6ua_           5 LQSKFFSPLQKAMLPPNSFQGKVAFITGGGTGLGKGMTTLL-SSLGAQCVIASRKMDV   61 (294)
T ss_dssp             HHHHHSCCCCSCCSCTTTTTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             hhhhhcCcccccCCCCCCCCCCEEEEeCCCCHHHHHHHHHH-HHcCCEEEEEECCHHH
Confidence            3444454333322334689999999998 688999999999 6999999999998754

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.67  E-value=0.0063  Score=43.19  Aligned_cols=34  Identities=15%  Similarity=0.310  Sum_probs=31.5

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      +++.|+|.|.||-++|..| ..+|++|..+.+.++
T Consensus        24 ~~~vIiG~G~ig~E~A~~l-~~lG~~Vtii~~~~~   57 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVY-SRLGSKVTVVEFQPQ   57 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSSS
T ss_pred             CeEEEECCCchHHHHHHHH-HhhCcceeEEEeccc
Confidence            6899999999999999998 899999999988764

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.65  E-value=0.013  Score=42.89  Aligned_cols=73  Identities=14%  Similarity=0.155  Sum_probs=44.3

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCc--EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      +|+|+|.|++|..+|-.+ ...|.  ++..+|..+.....+..|-- .... ............+ .|.++.||+|++.
T Consensus         2 KI~IIGaG~VG~~~a~~l-~~~~~~~elvL~Di~~~~~~g~alDl~-~~~~-~~~~~~~i~~~~d-~~~~~~adiVvit   76 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTC-LLNLDVDEIALVDIAEDLAVGEAMDLA-HAAA-GIDKYPKIVGGAD-YSLLKGSEIIVVT   76 (142)
T ss_dssp             EEEEECCSHHHHHHHHHH-HHHSCCSEEEEECSSHHHHHHHHHHHH-HHHH-TTTCCCEEEEESC-GGGGTTCSEEEEC
T ss_pred             EEEEECcCHHHHHHHHHH-HhcCcCceEEEEecccchhhHHHHHHh-hhcc-ccCCCCccccCCC-HHHhccccEEEEe
Confidence            799999999999999987 45554  79999987644222211110 0000 0011112233334 4789999999975

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.57  E-value=0.01  Score=49.28  Aligned_cols=68  Identities=21%  Similarity=0.307  Sum_probs=49.1

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      +++||+|.|..++.-++.+...|.. +|.+|+|++.. .+.+.+..    +..   ...  ...+..+.+..||+|+.+
T Consensus       126 ~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~-~~~~~~~~----~~~---~~~--~~~~~~~a~~~aDiV~ta  194 (320)
T d1omoa_         126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKA-AKKFVSYC----EDR---GIS--ASVQPAEEASRCDVLVTT  194 (320)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHH-HHHHHHHH----HHT---TCC--EEECCHHHHTSSSEEEEC
T ss_pred             cEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHH-HHHHHHHH----Hhc---CCc--cccchhhhhccccEEEEe
Confidence            5899999999999999988777887 79999998754 34443322    211   111  224667888999999865

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.57  E-value=0.0067  Score=42.52  Aligned_cols=35  Identities=20%  Similarity=0.283  Sum_probs=32.2

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      .+++.|+|.|.||-++|..| ..+|.+|..+.+..+
T Consensus        22 p~~v~IiGgG~ig~E~A~~l-~~~G~~Vtlve~~~~   56 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAY-ANFGTKVTILEGAGE   56 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSSS
T ss_pred             CCeEEEECCCccceeeeeee-cccccEEEEEEecce
Confidence            37899999999999999998 899999999998765

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=95.56  E-value=0.018  Score=42.73  Aligned_cols=34  Identities=24%  Similarity=0.448  Sum_probs=24.8

Q ss_pred             CEEEEEcCChHHHH-HHHHHhccCC-cEEEEE-cCCcc
Q 026023          166 QTVGVIGAGRIGSA-YARMMVEGFK-MNLIYY-DLYQA  200 (244)
Q Consensus       166 ~tvgIvG~G~IG~~-vA~~la~afG-~~V~~~-~~~~~  200 (244)
                      -++||+|.|.||+. +.+.| +.+. .++.++ +++..
T Consensus         5 irvaIIGaG~ig~~~~~~~l-~~~~~~el~avas~~~~   41 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVL-RNAKYLEMGAMVGIDAA   41 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHH-HHCSSEEEEEEECSCTT
T ss_pred             cEEEEEcCcHHHHHHHHHHH-hhCCcceEEEEEecchh
Confidence            48999999999986 67887 6554 466554 66654

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=95.55  E-value=0.0039  Score=50.32  Aligned_cols=36  Identities=19%  Similarity=0.291  Sum_probs=32.6

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcC
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDL  197 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~  197 (244)
                      .+|.|+||.|=|||++|+.+|+.| ...|++|++++.
T Consensus        32 ~~l~g~~v~IQGfGnVG~~~a~~L-~e~GakvvavsD   67 (255)
T d1bgva1          32 DTLVGKTVALAGFGNVAWGAAKKL-AELGAKAVTLSG   67 (255)
T ss_dssp             CCSTTCEEEECCSSHHHHHHHHHH-HHHTCEEEEEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEec
Confidence            358999999999999999999998 899999997654

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=95.53  E-value=0.02  Score=41.80  Aligned_cols=71  Identities=20%  Similarity=0.240  Sum_probs=41.5

Q ss_pred             EEEEEc-CChHHHHHHHHHhccCCc--EEEEEcCCcchHH-H-HHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023          167 TVGVIG-AGRIGSAYARMMVEGFKM--NLIYYDLYQATRL-E-KFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC  241 (244)
Q Consensus       167 tvgIvG-~G~IG~~vA~~la~afG~--~V~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv  241 (244)
                      +|+|+| .|++|+.+|-.+ ..-|.  ++..+|....+.. + +..|-....  .. ...... ...+. +-++.||+|+
T Consensus         2 KV~IiGaaG~VG~~~A~~l-~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~--~~-~~~~~i-~~~~~-~~~~~aDiVv   75 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNI-ALRDIADEVVFVDIPDKEDDTVGQAADTNHGI--AY-DSNTRV-RQGGY-EDTAGSDVVV   75 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHH-HHTTCCSEEEEECCGGGHHHHHHHHHHHHHHH--TT-TCCCEE-EECCG-GGGTTCSEEE
T ss_pred             eEEEECCCCcHHHHHHHHH-HhCCCCCEEEEEecCCcccccceeecchhhcc--cc-cCCceE-eeCCH-HHhhhcCEEE
Confidence            799999 699999999887 56665  7999996433211 1 111110000  01 111222 22344 4468999999


Q ss_pred             Ee
Q 026023          242 TL  243 (244)
Q Consensus       242 l~  243 (244)
                      +.
T Consensus        76 it   77 (142)
T d1o6za1          76 IT   77 (142)
T ss_dssp             EC
T ss_pred             Ee
Confidence            86

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=95.40  E-value=0.0062  Score=45.93  Aligned_cols=39  Identities=18%  Similarity=0.145  Sum_probs=34.4

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .+.|++|.|+|.|..|++++..| ..-+.+|..++|+...
T Consensus        15 ~~~~k~vlIlGaGGaarai~~aL-~~~~~~i~I~nR~~~~   53 (171)
T d1p77a1          15 LRPNQHVLILGAGGATKGVLLPL-LQAQQNIVLANRTFSK   53 (171)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHH-HHTTCEEEEEESSHHH
T ss_pred             CCCCCEEEEECCcHHHHHHHHHH-cccCceeeeccchHHH
Confidence            57899999999999999999988 5667899999999754

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.39  E-value=0.014  Score=43.14  Aligned_cols=37  Identities=19%  Similarity=0.403  Sum_probs=33.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .|++|.|.|.|.||...++.+ +.+|++|+++++++..
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a-~~~g~~v~~~~~~~~r   63 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYA-KAMGLNVVAVDIGDEK   63 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHH-HHTTCEEEEECSCHHH
T ss_pred             CCCEEEEeecccchhhhhHHH-hcCCCeEeccCCCHHH
Confidence            578999999999999999995 9999999999988754

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.39  E-value=0.0092  Score=41.83  Aligned_cols=34  Identities=26%  Similarity=0.617  Sum_probs=31.7

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      +++.|+|.|.||-++|..| +.+|.+|..+.+.++
T Consensus        22 ~~vvIiGgG~ig~E~A~~l-~~~G~~Vtlve~~~~   55 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVI-NGLGAKTHLFEMFDA   55 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSSS
T ss_pred             CEEEEECCChhhHHHHHHh-hccccEEEEEeecch
Confidence            6899999999999999998 899999999999864

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.35  E-value=0.011  Score=41.47  Aligned_cols=37  Identities=16%  Similarity=0.220  Sum_probs=33.7

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       163 l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      ..+++|.|+|.|.||-++|..| ..+|.+|..+.+.++
T Consensus        20 ~~~~~vvVvGgG~ig~E~A~~l-~~~g~~vt~i~~~~~   56 (121)
T d1mo9a2          20 EPGSTVVVVGGSKTAVEYGCFF-NATGRRTVMLVRTEP   56 (121)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSCT
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HhcchhheEeeccch
Confidence            3579999999999999999998 899999999998764

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.34  E-value=0.0095  Score=44.73  Aligned_cols=36  Identities=17%  Similarity=0.207  Sum_probs=30.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCcEE-EEEcCCcc
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNL-IYYDLYQA  200 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~~V-~~~~~~~~  200 (244)
                      .|.+|.|+|.|.||...+..+ +++|+++ +..++++.
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~a-k~~g~~~v~~~~~~~~   64 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAA-KVCGASIIIAVDIVES   64 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHH-HHHTCSEEEEEESCHH
T ss_pred             CCCEEEEeCCCHHHhhhhhcc-cccccceeeeeccHHH
Confidence            688999999999999999995 9999964 55676654

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.31  E-value=0.012  Score=46.92  Aligned_cols=39  Identities=18%  Similarity=0.204  Sum_probs=34.7

Q ss_pred             ccCCCEEEEEcCCh-HHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~G~-IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +|+||++.|-|.++ ||+++|+.| ..-|++|+.++|+..+
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~l-a~~Ga~V~i~~r~~~~   41 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGL-AEAGCSVVVASRNLEE   41 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            58999999998865 999999999 6999999999998654

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.25  E-value=0.011  Score=42.07  Aligned_cols=34  Identities=15%  Similarity=0.144  Sum_probs=31.7

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      |++.|+|.|.||-++|..| ..+|.+|..+.++.+
T Consensus        23 k~vvIvGgG~iG~E~A~~l-~~~G~~Vtlv~~~~~   56 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGIL-SALGSKTSLMIRHDK   56 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSSS
T ss_pred             CEEEEEcCCccHHHHHHHH-hcCCcEEEEEeeccc
Confidence            7899999999999999998 899999999999754

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=95.21  E-value=0.0099  Score=47.64  Aligned_cols=39  Identities=23%  Similarity=0.336  Sum_probs=33.8

Q ss_pred             cCCCEEEEEcCCh-HHHHHHHHHhccCCcEEEEEcCCcchH
Q 026023          163 LKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATR  202 (244)
Q Consensus       163 l~g~tvgIvG~G~-IG~~vA~~la~afG~~V~~~~~~~~~~  202 (244)
                      |+||++.|-|.+. ||+++|+.| ..-|++|+..+|+..+.
T Consensus         2 L~gK~alITGas~GIG~aiA~~l-a~~Ga~V~~~~r~~~~~   41 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATAL-AAQGADIVLNGFGDAAE   41 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHH-HHTTCEEEEECCSCHHH
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEeCCcHHH
Confidence            7899999988766 999999999 69999999999986443

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=95.19  E-value=0.033  Score=41.78  Aligned_cols=75  Identities=17%  Similarity=0.318  Sum_probs=46.6

Q ss_pred             CCEEEEEcCChHHHHHH---HHH-hccC-CcEEEEEcCCcchHHH--HHHhhhhhhhhcCCCCCccccccCCHHHHhhhC
Q 026023          165 GQTVGVIGAGRIGSAYA---RMM-VEGF-KMNLIYYDLYQATRLE--KFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA---~~l-a~af-G~~V~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s  237 (244)
                      +.+|+|+|.|++|...+   ..+ .+.| +-++..+|..++....  .....+    .+.......+....+++|.|+.|
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~----~~~~~~~~~i~~~td~~eaL~da   77 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKY----VEEVGADLKFEKTMNLDDVIIDA   77 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHH----HHHTTCCCEEEEESCHHHHHTTC
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHH----HHhcCCCeEEEEeCChhhcccCC
Confidence            35899999999997532   222 1234 3499999998654211  111111    11122234455667999999999


Q ss_pred             CEEEEe
Q 026023          238 DVVCTL  243 (244)
Q Consensus       238 D~Vvl~  243 (244)
                      |+|++.
T Consensus        78 d~Vv~~   83 (171)
T d1obba1          78 DFVINT   83 (171)
T ss_dssp             SEEEEC
T ss_pred             CeEeee
Confidence            999975

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=95.19  E-value=0.0034  Score=47.16  Aligned_cols=70  Identities=23%  Similarity=0.249  Sum_probs=43.2

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhccCCcEEEE-EcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC  241 (244)
Q Consensus       166 ~tvgIvG~-G~IG~~vA~~la~afG~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv  241 (244)
                      -+|+|.|+ |+.|+++++.+.+.=++++.+ +++...+....   .+|..   .+....+....++++++++.+|+|+
T Consensus         5 ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~---d~~~~---~~~~~~~~~~~~~~~~~~~~~DViI   76 (162)
T d1diha1           5 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGS---DAGEL---AGAGKTGVTVQSSLDAVKDDFDVFI   76 (162)
T ss_dssp             EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSC---CTTCS---SSSSCCSCCEESCSTTTTTSCSEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccc---hhhhh---hccccCCceeeccHHHHhcccceEE
Confidence            37999995 999999999874555888654 45543321100   01111   1122233444578899999999986

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=95.19  E-value=0.0076  Score=48.09  Aligned_cols=39  Identities=21%  Similarity=0.215  Sum_probs=34.1

Q ss_pred             cCCCEEEEEcC-Ch--HHHHHHHHHhccCCcEEEEEcCCcchH
Q 026023          163 LKGQTVGVIGA-GR--IGSAYARMMVEGFKMNLIYYDLYQATR  202 (244)
Q Consensus       163 l~g~tvgIvG~-G~--IG~~vA~~la~afG~~V~~~~~~~~~~  202 (244)
                      |.||++.|.|. |.  ||+++|+.| ..-|++|+..+++..+.
T Consensus         4 l~gK~~lItGaag~~GIG~aiA~~l-a~~Ga~Vil~~~~~~~~   45 (268)
T d2h7ma1           4 LDGKRILVSGIITDSSIAFHIARVA-QEQGAQLVLTGFDRLRL   45 (268)
T ss_dssp             TTTCEEEECCCSSTTCHHHHHHHHH-HHTTCEEEEEECSCHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHH-HHcCCEEEEEeCChHHH
Confidence            89999999996 54  999999998 79999999999876543

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=95.19  E-value=0.014  Score=46.78  Aligned_cols=39  Identities=26%  Similarity=0.306  Sum_probs=34.3

Q ss_pred             ccCCCEEEEEcCCh-HHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~G~-IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .|.||++.|-|.+. ||+++|+.| ..-|++|..++|+...
T Consensus         2 rL~gK~alITGas~GIG~aia~~l-a~~Ga~V~~~~r~~~~   41 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRL-AEEGTAIALLDMNREA   41 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            48999999999855 999999999 6999999999998643

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=95.17  E-value=0.0076  Score=48.44  Aligned_cols=39  Identities=26%  Similarity=0.291  Sum_probs=34.9

Q ss_pred             ccCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +|+||++.|.| .+.||+++|+.| ..-|++|+..+|+...
T Consensus         3 ~L~gK~alITGas~GIG~aia~~l-a~~G~~V~i~~r~~~~   42 (258)
T d1ae1a_           3 SLKGTTALVTGGSKGIGYAIVEEL-AGLGARVYTCSRNEKE   42 (258)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            58999999999 566999999998 7999999999998743

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.12  E-value=0.022  Score=43.38  Aligned_cols=77  Identities=14%  Similarity=0.183  Sum_probs=51.1

Q ss_pred             ccCCCEEEEEcC--ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023          162 LLKGQTVGVIGA--GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (244)
Q Consensus       162 ~l~g~tvgIvG~--G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~  239 (244)
                      .|.|.+|++||=  -++..+++..+ ..||+++..+.|..-...++..+..-.+....   ........++++.++.+|+
T Consensus         2 ~l~~lkia~vGD~~nnV~~Sli~~~-~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~eai~~aDv   77 (185)
T d1dxha2           2 PLHDISYAYLGDARNNMGNSLLLIG-AKLGMDVRIAAPKALWPHDEFVAQCKKFAEES---GAKLTLTEDPKEAVKGVDF   77 (185)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHH-HHTTCEEEEECCGGGSCCHHHHHHHHHHHHHH---TCEEEEESCHHHHTTTCSE
T ss_pred             CCCCCEEEEEcCCcchHHHHHHHHH-HHcCCEEEEEccHHHHhhhHHHHHHHHHhhcc---CCeEEEEeChhhccccccE
Confidence            478999999994  48999999997 79999999999954221122111100000001   1223345799999999999


Q ss_pred             EEE
Q 026023          240 VCT  242 (244)
Q Consensus       240 Vvl  242 (244)
                      |..
T Consensus        78 Vyt   80 (185)
T d1dxha2          78 VHT   80 (185)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            864

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.11  E-value=0.034  Score=41.57  Aligned_cols=78  Identities=17%  Similarity=0.184  Sum_probs=45.2

Q ss_pred             CEEEEEcCChHH--HHHHHHHh--ccCC-cEEEEEcCCcchHHHHHHhhh-hhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023          166 QTVGVIGAGRIG--SAYARMMV--EGFK-MNLIYYDLYQATRLEKFVTAY-GQFLKANGEQPVTWKRASSMDEVLREADV  239 (244)
Q Consensus       166 ~tvgIvG~G~IG--~~vA~~la--~afG-~~V~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~ell~~sD~  239 (244)
                      .+|.|+|.|++|  ..++..++  ..|. -.+..+|........+..+.. ....... ..........+..+.++.||+
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~-~~~~~~~~~td~~~al~gaDv   80 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKA-GVPIEIHLTLDRRRALDGADF   80 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHT-TCCCEEEEESCHHHHHTTCSE
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhc-CCCceeeecCCchhhcCCCCE
Confidence            379999999776  45555441  2344 489999987653222222211 0111111 122333455789999999999


Q ss_pred             EEEeC
Q 026023          240 VCTLC  244 (244)
Q Consensus       240 Vvl~~  244 (244)
                      |+++.
T Consensus        81 Vv~ta   85 (169)
T d1s6ya1          81 VTTQF   85 (169)
T ss_dssp             EEECC
T ss_pred             EEEcc
Confidence            99863

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=95.10  E-value=0.035  Score=37.11  Aligned_cols=38  Identities=18%  Similarity=0.162  Sum_probs=32.2

Q ss_pred             CEEEEEcCChHHH-HHHHHHhccCCcEEEEEcCCcchHHH
Q 026023          166 QTVGVIGAGRIGS-AYARMMVEGFKMNLIYYDLYQATRLE  204 (244)
Q Consensus       166 ~tvgIvG~G~IG~-~vA~~la~afG~~V~~~~~~~~~~~~  204 (244)
                      .++=++|-|-+|- .+|+.| +..|++|.++|+...+..+
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L-~~~G~~VsGSD~~~~~~t~   40 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHE-FSNGNDVYGSNIEETERTA   40 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEECSSCCHHHH
T ss_pred             cEEEEEeECHHHHHHHHHHH-HhCCCeEEEEeCCCChhHH
Confidence            4678999999998 789998 9999999999998765433

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.10  E-value=0.0067  Score=43.08  Aligned_cols=36  Identities=19%  Similarity=0.257  Sum_probs=32.6

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .+++.|+|.|-||-++|..+ ..+|++|..+.++++.
T Consensus        25 p~~~viiG~G~iglE~A~~~-~~~G~~Vtvi~~~~~~   60 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVW-GRIGSEVTVVEFASEI   60 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHH-HHHTCEEEEECSSSSS
T ss_pred             CCeEEEEccchHHHHHHHHH-HhcCCeEEEEEEcccc
Confidence            47899999999999999998 8999999999987643

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.08  E-value=0.013  Score=41.32  Aligned_cols=36  Identities=22%  Similarity=0.340  Sum_probs=32.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      ..+++.|+|.|.||-++|..| ..+|++|..+.+..+
T Consensus        21 ~p~~i~IiG~G~ig~E~A~~l-~~~G~~Vtiv~~~~~   56 (119)
T d3lada2          21 VPGKLGVIGAGVIGLELGSVW-ARLGAEVTVLEAMDK   56 (119)
T ss_dssp             CCSEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSSS
T ss_pred             CCCeEEEECCChHHHHHHHHH-HHcCCceEEEEeecc
Confidence            347899999999999999998 799999999988764

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=95.06  E-value=0.01  Score=42.28  Aligned_cols=35  Identities=17%  Similarity=0.258  Sum_probs=32.2

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      .+++.|+|.|-||-++|..+ ..+|.+|..+.+.++
T Consensus        26 p~~vvIiGgG~IG~E~A~~~-~~~G~~Vtive~~~~   60 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVY-STLGSRLDVVEMMDG   60 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHH-HHHTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHh-hcCCCEEEEEEeecc
Confidence            47899999999999999998 899999999998764

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.05  E-value=0.026  Score=42.02  Aligned_cols=74  Identities=15%  Similarity=0.205  Sum_probs=48.8

Q ss_pred             ccCCCEEEEEcCCh-HHHHHHHHHhccCCcEEEEEcCCcc---hHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhC
Q 026023          162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQA---TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (244)
Q Consensus       162 ~l~g~tvgIvG~G~-IG~~vA~~la~afG~~V~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s  237 (244)
                      +|.|++|.+||=|+ +..+++..+ ..||+++..+.|..-   +...+..+..+.      ..........++++.++.+
T Consensus         1 sl~gl~Ia~VGD~~nv~~Sli~~l-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~------~~~~~~~~~~d~~ea~~~a   73 (163)
T d1pvva2           1 TIKGVKVVYVGDGNNVAHSLMIAG-TKLGADVVVATPEGYEPDEKVIKWAEQNAA------ESGGSFELLHDPVKAVKDA   73 (163)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHH-HHTTCEEEEECCTTCCCCHHHHHHHHHHHH------HHTCEEEEESCHHHHTTTC
T ss_pred             CcCCCEEEEECCCcHHHHHHHHHH-HHcCCeEEEecccccCCChHHHHHHHHhhh------cccceEEEecCHHHHhhhc
Confidence            48899999999754 778889997 899999999998532   211111111000      0011223456899999999


Q ss_pred             CEEEE
Q 026023          238 DVVCT  242 (244)
Q Consensus       238 D~Vvl  242 (244)
                      |+|..
T Consensus        74 dviy~   78 (163)
T d1pvva2          74 DVIYT   78 (163)
T ss_dssp             SEEEE
T ss_pred             cEEee
Confidence            99874

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=95.02  E-value=0.021  Score=38.72  Aligned_cols=67  Identities=19%  Similarity=0.237  Sum_probs=46.7

Q ss_pred             CCCEEEEEcCChHH-HHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          164 KGQTVGVIGAGRIG-SAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       164 ~g~tvgIvG~G~IG-~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      ..+++=++|.|.+| ..+|+.| +..|.+|.++|....+..+...+        .+.   .+.. ..-.+-++..|+||.
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L-~~~G~~VsGSD~~~~~~~~~L~~--------~Gi---~v~~-g~~~~~i~~~d~vV~   73 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEIL-LNEGYQISGSDIADGVVTQRLAQ--------AGA---KIYI-GHAEEHIEGASVVVV   73 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHH-HHHTCEEEEEESCCSHHHHHHHH--------TTC---EEEE-SCCGGGGTTCSEEEE
T ss_pred             hCCEEEEEEECHHHHHHHHHHH-HhCCCEEEEEeCCCChhhhHHHH--------CCC---eEEE-CCccccCCCCCEEEE
Confidence            56899999999999 5669998 99999999999986654333221        122   2222 233445688999886


Q ss_pred             e
Q 026023          243 L  243 (244)
Q Consensus       243 ~  243 (244)
                      .
T Consensus        74 S   74 (96)
T d1p3da1          74 S   74 (96)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.02  E-value=0.016  Score=46.06  Aligned_cols=40  Identities=18%  Similarity=0.120  Sum_probs=34.4

Q ss_pred             cccCCCEEEEEcCC---hHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          161 NLLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       161 ~~l~g~tvgIvG~G---~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .+|+||++.|-|.+   .||+++|++| ..-|++|+..+++.+.
T Consensus         4 ~~L~gK~alITGas~~~GIG~aiA~~l-a~~Ga~V~i~~~~~~~   46 (256)
T d1ulua_           4 VDLSGKKALVMGVTNQRSLGFAIAAKL-KEAGAEVALSYQAERL   46 (256)
T ss_dssp             ECCTTCEEEEESCCCSSSHHHHHHHHH-HHTTCEEEEEESSGGG
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHH-HHCCCEEEEEeCcHHH
Confidence            46999999999975   4999999999 5889999998887543

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.99  E-value=0.023  Score=42.44  Aligned_cols=77  Identities=22%  Similarity=0.134  Sum_probs=48.8

Q ss_pred             ccCCCEEEEEcCCh-HHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       162 ~l~g~tvgIvG~G~-IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      +|.|++|++||=|+ +..++++.+ .-||+++..+.|..-....+..+.........   ...+....++++.+..+|+|
T Consensus         1 sl~gl~I~~vGD~~nV~~Sli~~~-~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~---~~~i~~~~d~~~~~~~advi   76 (170)
T d1otha2           1 SLKGLTLSWIGDGNNILHSIMMSA-AKFGMHLQAATPKGYEPDASVTKLAEQYAKEN---GTKLLLTNDPLEAAHGGNVL   76 (170)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHTTT-GGGTCEEEEECCTTCCCCHHHHHHHHHHHHHH---TCCEEEESCHHHHHTTCSEE
T ss_pred             CCCCCEEEEEcCchhHHHHHHHHH-HHcCCEEEEEeccccCCchHHHHHHHHHHhcc---CCEEEEEcCHHHHHhhhhhe
Confidence            48899999999754 556777876 67999999999864321111111100001111   11234567999999999998


Q ss_pred             EE
Q 026023          241 CT  242 (244)
Q Consensus       241 vl  242 (244)
                      ..
T Consensus        77 ~~   78 (170)
T d1otha2          77 IT   78 (170)
T ss_dssp             EE
T ss_pred             ee
Confidence            74

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=94.92  E-value=0.017  Score=43.17  Aligned_cols=37  Identities=24%  Similarity=0.249  Sum_probs=33.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcch
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~  201 (244)
                      .+++|.|+|.|..|++++.-| +-.|+ +|..++|+...
T Consensus        16 ~~~~vlIlGaGGaarai~~aL-~~~g~~~I~I~nR~~~k   53 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAF-KNSGFEKLKIYARNVKT   53 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHH-HHTTCCCEEEECSCHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHH-HHCCCCEEEEecccHHH
Confidence            678999999999999999998 89998 79999998754

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.87  E-value=0.029  Score=41.73  Aligned_cols=36  Identities=22%  Similarity=0.363  Sum_probs=32.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       164 ~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      .|++|.|.|. |.||....+.+ +.+|++|++.+++++
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a-~~~G~~vi~~~~~~~   64 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIA-RAYGLKILGTAGTEE   64 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHH-HHTTCEEEEEESSHH
T ss_pred             CCCEEEEEeccccccccccccc-cccCccccccccccc
Confidence            6889999995 99999999995 999999999998754

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=94.86  E-value=0.021  Score=45.55  Aligned_cols=37  Identities=22%  Similarity=0.240  Sum_probs=33.2

Q ss_pred             cCCCEEEEEcC-C--hHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          163 LKGQTVGVIGA-G--RIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       163 l~g~tvgIvG~-G--~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      |+||++.|.|. |  .||.++|+.| ..-|++|+..+|+..
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~l-a~~Ga~V~i~~r~~~   42 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSC-FNQGATLAFTYLNES   42 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHH-HTTTCEEEEEESSTT
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHH-HHCCCEEEEEeCCHH
Confidence            89999999997 4  4999999999 699999999999854

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.85  E-value=0.018  Score=45.95  Aligned_cols=40  Identities=20%  Similarity=0.257  Sum_probs=34.9

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ..|.||++.|-|. +.||+++|+.| ..-|++|+..+|+...
T Consensus         2 ~rl~GK~alITGas~GIG~aia~~l-a~~Ga~V~i~~r~~~~   42 (250)
T d1ydea1           2 TRYAGKVVVVTGGGRGIGAGIVRAF-VNSGARVVICDKDESG   42 (250)
T ss_dssp             CTTTTCEEEEETCSSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            3589999999986 67999999999 6899999999998643

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.83  E-value=0.011  Score=47.64  Aligned_cols=39  Identities=18%  Similarity=0.156  Sum_probs=34.0

Q ss_pred             ccCCCEEEEEcCC-hHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~G-~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .|+||++.|-|.+ .||+++|+.| ..-|++|+..+|+...
T Consensus         2 rL~gK~alVTGas~GIG~aia~~l-a~~Ga~V~l~~r~~~~   41 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILF-AQEGANVTITGRSSER   41 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            4899999999864 5999999999 6999999999998643

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=94.83  E-value=0.029  Score=41.28  Aligned_cols=69  Identities=22%  Similarity=0.320  Sum_probs=47.9

Q ss_pred             cCCCEEEEEcC---ChHHHHHHHHHhccCCcEEEEEcCCcch-HHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCC
Q 026023          163 LKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQAT-RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (244)
Q Consensus       163 l~g~tvgIvG~---G~IG~~vA~~la~afG~~V~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (244)
                      |.|++|+++|=   |++..+++..+ .-||+++..+.+.... ..+....          .....+....++++.++.+|
T Consensus         1 l~gl~i~~vGD~~~sRv~~Sl~~~l-~~~g~~~~~~~p~~~~~~~~~~~~----------~~~~~~~~~~d~~eai~~aD   69 (153)
T d1pg5a2           1 IDGLVFALLGDLKYARTVNSLLRIL-TRFRPKLVYLISPQLLRARKEILD----------ELNYPVKEVENPFEVINEVD   69 (153)
T ss_dssp             STTCEEEEEECCSSCHHHHHHHHHG-GGSCCSEEEEECCGGGCCCHHHHT----------TCCSCEEEESCGGGTGGGCS
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHH-HHcCCeeEEEecccccccchhhcc----------cCCCeEEEEeCHHHHhhcCC
Confidence            57999999996   56999999997 8999997766554322 1111111          11233455679999999999


Q ss_pred             EEEE
Q 026023          239 VVCT  242 (244)
Q Consensus       239 ~Vvl  242 (244)
                      +|..
T Consensus        70 vvy~   73 (153)
T d1pg5a2          70 VLYV   73 (153)
T ss_dssp             EEEE
T ss_pred             eEEE
Confidence            9853

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.81  E-value=0.0099  Score=42.15  Aligned_cols=32  Identities=16%  Similarity=0.210  Sum_probs=29.6

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCC
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~  198 (244)
                      +++.|||.|.||-++|..| +.||.+|..+.++
T Consensus        21 ~~vvIIGgG~iG~E~A~~l-~~lG~~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFL-AGIGLDVTVMVRS   52 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHH-HHTTCCEEEEESS
T ss_pred             CeEEEECCCccHHHHHHHH-hhcCCeEEEEEec
Confidence            5799999999999999998 8999999988875

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.71  E-value=0.015  Score=45.86  Aligned_cols=40  Identities=23%  Similarity=0.302  Sum_probs=35.5

Q ss_pred             cccCCCEEEEEcCCh-HHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~-IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ++|+||++.|-|.++ ||+++|+.| ..-|++|+..+|+...
T Consensus         1 ~slkGKvalITGas~GIG~aia~~l-a~~G~~V~~~~r~~~~   41 (248)
T d2o23a1           1 RSVKGLVAVITGGASGLGLATAERL-VGQGASAVLLDLPNSG   41 (248)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECTTSS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEeCChHH
Confidence            469999999998766 999999999 6999999999998754

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.69  E-value=0.019  Score=40.58  Aligned_cols=37  Identities=24%  Similarity=0.265  Sum_probs=32.9

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       163 l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      ..++++.|+|.|-||-++|..| ..+|.+|..+.+.++
T Consensus        28 ~~~k~vvViGgG~iG~E~A~~l-~~~g~~Vtlie~~~~   64 (123)
T d1nhpa2          28 PEVNNVVVIGSGYIGIEAAEAF-AKAGKKVTVIDILDR   64 (123)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSSS
T ss_pred             cCCCEEEEECChHHHHHHHHHh-hccceEEEEEEecCc
Confidence            3568999999999999999998 799999999988654

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.64  E-value=0.024  Score=42.26  Aligned_cols=59  Identities=29%  Similarity=0.370  Sum_probs=36.3

Q ss_pred             EEEEEcCChHHHHHHHHHhccCC----cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhC--CEE
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA--DVV  240 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG----~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s--D~V  240 (244)
                      +|||||+|.+|+..++.+ +...    ..+...+.....                  .........+++|++...  |+|
T Consensus         9 kv~iIG~G~~g~~h~~~l-~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~e~l~~~~iD~V   69 (172)
T d1lc0a1           9 GVVVVGVGRAGSVRLRDL-KDPRSAAFLNLIGFVSRREL------------------GSLDEVRQISLEDALRSQEIDVA   69 (172)
T ss_dssp             EEEEECCSHHHHHHHHHH-TSHHHHTTEEEEEEECSSCC------------------CEETTEEBCCHHHHHHCSSEEEE
T ss_pred             EEEEEcCCHHHHHHHHHH-HhCCCCcEEEEEeccchHHH------------------HHhhccCcCCHHHHHhCCCcchh
Confidence            799999999999998887 5543    333333322111                  001112345899999854  778


Q ss_pred             EEeC
Q 026023          241 CTLC  244 (244)
Q Consensus       241 vl~~  244 (244)
                      ++++
T Consensus        70 ~I~t   73 (172)
T d1lc0a1          70 YICS   73 (172)
T ss_dssp             EECS
T ss_pred             hhcc
Confidence            7753

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=94.62  E-value=0.02  Score=40.40  Aligned_cols=37  Identities=14%  Similarity=0.163  Sum_probs=33.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .++++.|+|.|-||-++|..| +..|.+|..+.++++.
T Consensus        29 ~~~~vvIIGgG~iG~E~A~~l-~~~g~~Vtli~~~~~~   65 (121)
T d1d7ya2          29 PQSRLLIVGGGVIGLELAATA-RTAGVHVSLVETQPRL   65 (121)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSSST
T ss_pred             cCCeEEEECcchhHHHHHHHh-hcccceEEEEeecccc
Confidence            357999999999999999998 7999999999988753

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=94.50  E-value=0.013  Score=47.00  Aligned_cols=40  Identities=25%  Similarity=0.254  Sum_probs=35.7

Q ss_pred             cccCCCEEEEEcCCh-HHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~-IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .++.||++.|-|.++ ||+++|+.| ..-|++|+..+|+...
T Consensus         5 m~l~gK~alITGas~GIG~aia~~l-a~~Ga~V~i~~r~~~~   45 (260)
T d1h5qa_           5 ISFVNKTIIVTGGNRGIGLAFTRAV-AAAGANVAVIYRSAAD   45 (260)
T ss_dssp             ECCTTEEEEEETTTSHHHHHHHHHH-HHTTEEEEEEESSCTT
T ss_pred             ccCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            468999999998876 999999999 6899999999998754

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.49  E-value=0.04  Score=43.17  Aligned_cols=37  Identities=19%  Similarity=0.205  Sum_probs=33.2

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       163 l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      |+||++.|-|. +.||+++|+.| ..-|++|...+|+..
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l-~~~Ga~V~~~~r~~~   39 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVL-SQEGAEVTICARNEE   39 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHH-HHTTCEEEEEESCHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEECCHH
Confidence            78999999997 45999999999 699999999999854

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=94.48  E-value=0.025  Score=42.54  Aligned_cols=38  Identities=21%  Similarity=0.204  Sum_probs=33.1

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcch
Q 026023          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (244)
Q Consensus       163 l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~  201 (244)
                      -.|.+|.|+|.|.||...+..+ +++|+ +|+..++++..
T Consensus        27 ~~G~~VlV~G~G~iGl~a~~~a-k~~Ga~~Vi~~d~~~~r   65 (174)
T d1e3ia2          27 TPGSTCAVFGLGCVGLSAIIGC-KIAGASRIIAIDINGEK   65 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCGGG
T ss_pred             CCCCEEEEECCChHHHHHHHHH-HHhCCceeeeeccchHH
Confidence            3678999999999999999995 99999 68888888654

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.44  E-value=0.022  Score=43.35  Aligned_cols=69  Identities=19%  Similarity=0.113  Sum_probs=43.4

Q ss_pred             CEEEEEc-CChHHHHHHHHHhccCC--cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          166 QTVGVIG-AGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       166 ~tvgIvG-~G~IG~~vA~~la~afG--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      +||.|.| .|.||+.+++.| ..-|  ..|....|++... +...       ..............++.++++.+|.|+.
T Consensus         4 ~tVlVtGatG~iG~~l~~~L-l~~g~~v~v~~~~R~~~~~-~~~~-------~~~~~~~~d~~~~~~~~~~~~~~d~vi~   74 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKL-KEGSDKFVAKGLVRSAQGK-EKIG-------GEADVFIGDITDADSINPAFQGIDALVI   74 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHH-HHTTTTCEEEEEESCHHHH-HHTT-------CCTTEEECCTTSHHHHHHHHTTCSEEEE
T ss_pred             CEEEEECCccHHHHHHHHHH-HHCCCcEEEEEEcCCHHHH-Hhcc-------CCcEEEEeeeccccccccccccceeeEE
Confidence            4899999 799999999998 5666  5677778876542 1100       0000011122233457788899998864


Q ss_pred             e
Q 026023          243 L  243 (244)
Q Consensus       243 ~  243 (244)
                      +
T Consensus        75 ~   75 (252)
T d2q46a1          75 L   75 (252)
T ss_dssp             C
T ss_pred             E
Confidence            3

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=94.43  E-value=0.024  Score=42.20  Aligned_cols=37  Identities=19%  Similarity=0.426  Sum_probs=31.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcch
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~  201 (244)
                      .|.+|.|+|.|.+|...++.+ +.+|+ +|++.++++..
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a-~~~g~~~vv~~~~~~~k   69 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLL-KVMTPATVIALDVKEEK   69 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHCCCEEEEEESSHHH
T ss_pred             CCCEEEEeCCChHHHHHHHHH-HhhcCcccccccchhHH
Confidence            478999999999999999996 89997 67888887643

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.39  E-value=0.043  Score=43.68  Aligned_cols=40  Identities=20%  Similarity=0.157  Sum_probs=34.7

Q ss_pred             ccccCCCEEEEEcCC-hHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          160 GNLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       160 ~~~l~g~tvgIvG~G-~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      +..++||++.|-|.+ .||+++|+.| ..-|++|+.++|+..
T Consensus         5 M~~lk~Kv~lITGas~GIG~aiA~~l-a~~G~~Vv~~~r~~~   45 (257)
T d1xg5a_           5 MERWRDRLALVTGASGGIGAAVARAL-VQQGLKVVGCARTVG   45 (257)
T ss_dssp             CGGGTTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCHH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHH
Confidence            345999999999865 5999999999 588999999999864

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.35  E-value=0.042  Score=41.99  Aligned_cols=37  Identities=38%  Similarity=0.334  Sum_probs=32.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcch
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~  201 (244)
                      .|.+|.|+|.|.||...+..+ +.+|+ +|+++++++..
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~a-k~~ga~~Vi~~d~~~~r   62 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASA-RLLGAAVVIVGDLNPAR   62 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEEESCHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHH-Hhhcccceeeecccchh
Confidence            578999999999999999995 89999 79999988643

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.35  E-value=0.014  Score=46.79  Aligned_cols=40  Identities=28%  Similarity=0.268  Sum_probs=35.3

Q ss_pred             cccCCCEEEEEcCCh-HHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~-IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .+|+||++.|-|.++ ||+++|+.| ..-|++|+.++|+...
T Consensus         4 F~LkgK~alVTGas~GIG~aiA~~l-a~~Ga~V~~~~r~~~~   44 (259)
T d1xq1a_           4 WSLKAKTVLVTGGTKGIGHAIVEEF-AGFGAVIHTCARNEYE   44 (259)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            469999999998766 999999999 6899999999998644

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.31  E-value=0.018  Score=46.48  Aligned_cols=37  Identities=16%  Similarity=0.233  Sum_probs=33.0

Q ss_pred             cCCCEEEEEcCCh-HHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          163 LKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       163 l~g~tvgIvG~G~-IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      |.||++.|-|.+. ||+++|+.| ..-|++|+..+|+..
T Consensus         2 L~gK~alITGas~GIG~aia~~l-a~~Ga~V~~~~r~~~   39 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIF-AKEGAQVTITGRNED   39 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHH-HHTTCEEEEEESCHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEECCHH
Confidence            7899999998754 999999999 689999999999864

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=94.27  E-value=0.019  Score=45.91  Aligned_cols=39  Identities=23%  Similarity=0.247  Sum_probs=34.6

Q ss_pred             ccCCCEEEEEcCCh-HHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~G~-IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +|.||++.|-|.++ ||+++|+.| ..-|++|+..+|+...
T Consensus         5 ~L~GK~alITGas~GIG~aia~~l-a~~Ga~V~~~~r~~~~   44 (259)
T d2ae2a_           5 NLEGCTALVTGGSRGIGYGIVEEL-ASLGASVYTCSRNQKE   44 (259)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            69999999999865 999999999 6889999999997644

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=94.26  E-value=0.091  Score=38.89  Aligned_cols=37  Identities=22%  Similarity=0.311  Sum_probs=33.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcch
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~  201 (244)
                      .|.+|.|+|.|-+|...+..+ +.+|+ +|++.+++...
T Consensus        28 ~GdtVlV~GaGG~G~~~~~~~-~~~g~~~Vi~~~~~~~k   65 (176)
T d2jhfa2          28 QGSTCAVFGLGGVGLSVIMGC-KAAGAARIIGVDINKDK   65 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCGGG
T ss_pred             CCCEEEEECCCCcHHHHHHHH-HHcCCceEEeecCcHHH
Confidence            678999999999999999996 89986 89999998765

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.23  E-value=0.02  Score=40.31  Aligned_cols=35  Identities=17%  Similarity=0.117  Sum_probs=32.0

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      ++++.|+|.|.||-++|..| ..+|.+|..+.+.+.
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l-~~~g~~Vtlv~~~~~   66 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNL-AEAGYHVKLIHRGAM   66 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHH-HHTTCEEEEECSSSC
T ss_pred             CCcEEEECCcHHHHHHHHHh-hcccceEEEEecccc
Confidence            36899999999999999998 899999999998765

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=94.15  E-value=0.04  Score=43.62  Aligned_cols=46  Identities=24%  Similarity=0.228  Sum_probs=37.8

Q ss_pred             ccCCCEEEEEcCC-hHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHh
Q 026023          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT  208 (244)
Q Consensus       162 ~l~g~tvgIvG~G-~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~  208 (244)
                      .|.||++.|-|.+ .||+++|+.| ..-|++|+..+++..+..+...+
T Consensus         2 rL~gKvalVTGas~GIG~aia~~l-a~~Ga~V~~~~~~~~~~~~~~~~   48 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERF-AVEGADIAIADLVPAPEAEAAIR   48 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSCCHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCchHHHHHHHH
Confidence            4899999999885 4999999999 69999999999987654444333

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=94.12  E-value=0.018  Score=46.01  Aligned_cols=40  Identities=23%  Similarity=0.213  Sum_probs=32.9

Q ss_pred             cccCCCEEEEEcCCh-HHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~-IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +.|.||++.|-|.+. ||+++|+.| ..-|++|+...++..+
T Consensus         2 ~~L~GK~alITGas~GIG~aia~~l-a~~G~~Vvi~~~~~~~   42 (259)
T d1ja9a_           2 KPLAGKVALTTGAGRGIGRGIAIEL-GRRGASVVVNYGSSSK   42 (259)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESSCHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHH-HHcCCEEEEEcCCChH
Confidence            359999999998765 999999999 7999999876555433

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=94.11  E-value=0.045  Score=43.39  Aligned_cols=40  Identities=23%  Similarity=0.187  Sum_probs=34.8

Q ss_pred             cccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       161 ~~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ..|.||++.|-|. +.||+++|+.| ..-|++|+.++|+...
T Consensus         6 f~lenKvalITGas~GIG~a~a~~l-a~~Ga~V~~~~r~~~~   46 (251)
T d2c07a1           6 YCGENKVALVTGAGRGIGREIAKML-AKSVSHVICISRTQKS   46 (251)
T ss_dssp             CCCSSCEEEEESTTSHHHHHHHHHH-TTTSSEEEEEESSHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHH-HHcCCEEEEEECCHHH
Confidence            4589999999987 46999999999 6999999999997643

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.11  E-value=0.024  Score=39.37  Aligned_cols=35  Identities=17%  Similarity=0.213  Sum_probs=32.1

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      .+++.|+|-|.||-++|..| +.+|.+|..+.+.++
T Consensus        21 p~~vvIiGgG~~G~E~A~~l-~~~g~~Vtlve~~~~   55 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAY-RKLGAQVSVVEARER   55 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHH-HHHTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHH-hhcccceEEEeeecc
Confidence            37899999999999999998 899999999998764

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.08  E-value=0.016  Score=43.42  Aligned_cols=37  Identities=11%  Similarity=0.287  Sum_probs=32.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCcE-EEEEcCCcch
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~~-V~~~~~~~~~  201 (244)
                      .+|+|.|||.|.+|-..|..| .-.|++ |..++++...
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l-~~~G~~~V~v~E~~~~~   40 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFL-ARLGYSDITIFEKQEYV   40 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHH-HHTTCCCEEEEESSSSC
T ss_pred             CCCEEEEECChHHHHHHHHHH-HHCCCCeEEEEEecCcc
Confidence            578999999999999999998 789995 9899987643

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=94.00  E-value=0.035  Score=41.55  Aligned_cols=35  Identities=23%  Similarity=0.337  Sum_probs=28.7

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +|||=|||+||+.+.|.+..--..+|.+.+.....
T Consensus         3 kigINGFGRIGR~v~R~~~~~~~i~ivaINd~~~~   37 (166)
T d1gado1           3 KVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDA   37 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSCH
T ss_pred             EEEEECCcHHHHHHHHHHhhCCCeEEEEEeCCCCH
Confidence            79999999999999999744446899998876543

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=93.89  E-value=0.13  Score=38.48  Aligned_cols=78  Identities=15%  Similarity=0.003  Sum_probs=47.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHhc--cCCc----EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhh
Q 026023          164 KGQTVGVIGA-GRIGSAYARMMVE--GFKM----NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (244)
Q Consensus       164 ~g~tvgIvG~-G~IG~~vA~~la~--afG~----~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  236 (244)
                      +..+|.|+|. |.||+.++-+|+.  -||.    .+..+|........+... +... .............++..+.++.
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~-mdl~-d~a~~~~~~~~~~~~~~~~~~~  100 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVA-MELE-DSLYPLLREVSIGIDPYEVFED  100 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHH-HHHH-TTTCTTEEEEEEESCHHHHTTT
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchh-hhhc-ccccccccCccccccchhhccC
Confidence            3458999996 9999999988744  3664    677777765432222111 0000 0001111233445789999999


Q ss_pred             CCEEEEe
Q 026023          237 ADVVCTL  243 (244)
Q Consensus       237 sD~Vvl~  243 (244)
                      ||+|++.
T Consensus       101 aDvVvi~  107 (175)
T d7mdha1         101 VDWALLI  107 (175)
T ss_dssp             CSEEEEC
T ss_pred             CceEEEe
Confidence            9999985

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.85  E-value=0.024  Score=45.45  Aligned_cols=40  Identities=25%  Similarity=0.375  Sum_probs=35.4

Q ss_pred             cccCCCEEEEEcCCh-HHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~-IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ..|+||++.|-|.++ ||+++|+.| ..-|++|+..+|+...
T Consensus        10 ~~L~GK~alITGassGIG~aiA~~l-a~~G~~Vil~~r~~~~   50 (269)
T d1xu9a_          10 EMLQGKKVIVTGASKGIGREMAYHL-AKMGAHVVVTARSKET   50 (269)
T ss_dssp             GGGTTCEEEESSCSSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             cccCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            459999999999876 999999999 6899999999998643

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=93.85  E-value=0.015  Score=42.93  Aligned_cols=61  Identities=25%  Similarity=0.365  Sum_probs=46.6

Q ss_pred             CCCEEEEEcC---ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          164 KGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       164 ~g~tvgIvG~---G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      .|.+|+++|=   ++.+.+++..+ .-||+++....|..-...++               .  +....+++|.++.+|+|
T Consensus         2 ~gl~i~~vGD~~~srv~~Sl~~~~-~~~g~~~~i~~P~~~~~~~~---------------~--~~~~~~~~ea~~~aDvi   63 (151)
T d2at2a2           2 KGLTVSIHGDIKHSRVARSNAEVL-TRLGARVLFSGPSEWQDEEN---------------T--FGTYVSMDEAVESSDVV   63 (151)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH-HHcCCcccccCCchhhcccc---------------c--eeEEEechhccccCcee
Confidence            5889999996   68999999998 79999999998864321111               1  22346899999999998


Q ss_pred             EE
Q 026023          241 CT  242 (244)
Q Consensus       241 vl  242 (244)
                      ..
T Consensus        64 y~   65 (151)
T d2at2a2          64 ML   65 (151)
T ss_pred             ee
Confidence            64

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=93.81  E-value=0.054  Score=40.88  Aligned_cols=74  Identities=12%  Similarity=0.073  Sum_probs=50.7

Q ss_pred             ccCCCEEEEEcCC--hHHHHHHHHHhccCCcEEEEEcCCcc---hHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhh
Q 026023          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQA---TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (244)
Q Consensus       162 ~l~g~tvgIvG~G--~IG~~vA~~la~afG~~V~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  236 (244)
                      ++.|.+|+++|=|  ++..+++..+ .-|||++..+.|..-   +...+....+   ...   .........++++.++.
T Consensus         2 ~~~~l~i~~vGD~~nnv~~Sli~~~-~~~g~~l~~~~P~~~~~~~~~~~~~~~~---~~~---~g~~~~~~~d~~~a~~~   74 (183)
T d1duvg2           2 AFNEMTLVYAGDARNNMGNSMLEAA-ALTGLDLRLVAPQACWPEAALVTECRAL---AQQ---NGGNITLTEDVAKGVEG   74 (183)
T ss_dssp             CGGGCEEEEESCTTSHHHHHHHHHH-HHHCCEEEEECCGGGCCCHHHHHHHHHH---HHH---TTCEEEEESCHHHHHTT
T ss_pred             CcCCCEEEEEcCCccHHHHHHHHHH-HHcCCEEEEEechHhhhhHHHHHHHHHH---HHh---cCCceEEEechhhcccc
Confidence            4788999999965  6889999997 789999999998532   2111111111   011   11223355799999999


Q ss_pred             CCEEEE
Q 026023          237 ADVVCT  242 (244)
Q Consensus       237 sD~Vvl  242 (244)
                      +|+|..
T Consensus        75 aDvvyt   80 (183)
T d1duvg2          75 ADFIYT   80 (183)
T ss_dssp             CSEEEE
T ss_pred             CCEEEE
Confidence            999965

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=93.79  E-value=0.028  Score=44.84  Aligned_cols=39  Identities=26%  Similarity=0.368  Sum_probs=34.6

Q ss_pred             ccCCCEEEEEcCCh-HHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~G~-IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +|.||++.|-|.++ ||+++|+.| ..-|++|+..+|+...
T Consensus         2 dL~gK~alVTGas~GIG~aia~~l-a~~Ga~V~~~~r~~~~   41 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQA-VAAGARVVLADVLDEE   41 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            58999999999875 999999999 6889999999998654

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=93.79  E-value=0.036  Score=43.20  Aligned_cols=35  Identities=29%  Similarity=0.347  Sum_probs=31.9

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      ||+|.|||.|--|-..|..| ...|.+|+.++++.+
T Consensus         1 ~KkV~IIGaG~aGL~aA~~L-a~~G~~V~vlE~~~~   35 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKL-KIHGLNVTVFEAEGK   35 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHH-HTTSCEEEEECSSSS
T ss_pred             CCEEEEECcCHHHHHHHHHH-HhCCCCEEEEeCCCC
Confidence            68999999999999999998 678999999998653

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=93.79  E-value=0.041  Score=41.26  Aligned_cols=38  Identities=24%  Similarity=0.246  Sum_probs=34.1

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcch
Q 026023          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (244)
Q Consensus       163 l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~  201 (244)
                      -.|.+|.|+|.|.+|...+..+ +.+|+ +|+++|++...
T Consensus        28 ~~g~tVlI~G~GgvGl~ai~~a-k~~G~~~Vi~vd~~~~k   66 (176)
T d1d1ta2          28 KPGSTCVVFGLGGVGLSVIMGC-KSAGASRIIGIDLNKDK   66 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCGGG
T ss_pred             CCCCEEEEECCCchhHHHHHHH-HHcCCceEEEecCcHHH
Confidence            3688999999999999999996 99996 89999998765

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.76  E-value=0.036  Score=41.35  Aligned_cols=36  Identities=19%  Similarity=0.171  Sum_probs=31.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       164 ~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      .|++|.|.|. |.+|...++.+ +.+|++|++..++..
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla-~~~g~~vi~~~~~~~   61 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIA-KMIGARIYTTAGSDA   61 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHH-HHHTCEEEEEESSHH
T ss_pred             CCCEEEEECCCCCcccccchhh-ccccccceeeecccc
Confidence            5789999885 99999999995 999999999988754

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.75  E-value=0.029  Score=44.41  Aligned_cols=39  Identities=28%  Similarity=0.399  Sum_probs=34.3

Q ss_pred             ccCCCEEEEEcCCh-HHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~G~-IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .|.||++.|-|.++ ||+++|++| ..-|++|+..+|+...
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~l-a~~G~~V~~~~r~~~~   43 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQAL-HATGARVVAVSRTQAD   43 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHH-HHcCCEEEEEECCHHH
Confidence            48999999998765 999999999 6899999999998643

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=93.73  E-value=0.031  Score=40.79  Aligned_cols=35  Identities=20%  Similarity=0.333  Sum_probs=30.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCC--cEEEEEcCCc
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQ  199 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG--~~V~~~~~~~  199 (244)
                      .||+|.|||.|.+|-++|..| +-+|  .+|..+++.+
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l-~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYI-KLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHH-HHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECccHHHHHHHHHH-HHcCCCCcEEEEECCC
Confidence            489999999999999999998 6666  6899888876

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.70  E-value=0.03  Score=44.29  Aligned_cols=39  Identities=18%  Similarity=0.228  Sum_probs=34.3

Q ss_pred             ccCCCEEEEEcCC-hHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~G-~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +|.||++.|-|.+ .||+++|+.| ..-|++|+..+|+...
T Consensus         2 dl~GK~alITGas~GIG~aia~~l-a~~Ga~V~~~~r~~~~   41 (242)
T d1cyda_           2 NFSGLRALVTGAGKGIGRDTVKAL-HASGAKVVAVTRTNSD   41 (242)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            4899999999875 5999999999 6999999999998643

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=93.64  E-value=0.044  Score=39.13  Aligned_cols=37  Identities=24%  Similarity=0.251  Sum_probs=33.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .++++.|+|-|-||-++|..| ...|.+|..+.+.++.
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l-~~~g~~Vtvie~~~~~   70 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATA-IKANMHVTLLDTAARV   70 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSSST
T ss_pred             cCCEEEEECCchHHHHHHHHH-HhhCcceeeeeecccc
Confidence            468999999999999999998 7999999999997653

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=93.61  E-value=0.028  Score=41.94  Aligned_cols=37  Identities=19%  Similarity=0.283  Sum_probs=32.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .|++|.|.|. |.+|+...+.+ +.+|++|++.++++..
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqla-k~~G~~vi~~~~~~~~   64 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVA-RAMGLRVLAAASRPEK   64 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHH-HHTTCEEEEEESSGGG
T ss_pred             CCCEEEEEeccccchhhhhhhh-cccccccccccccccc
Confidence            6789999995 99999999995 9999999999987643

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=93.51  E-value=0.1  Score=40.75  Aligned_cols=72  Identities=8%  Similarity=0.079  Sum_probs=42.2

Q ss_pred             cccCCCEEEEEcCChHH----HHHHHHHhccC--CcEEEE-EcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHH
Q 026023          161 NLLKGQTVGVIGAGRIG----SAYARMMVEGF--KMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV  233 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG----~~vA~~la~af--G~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  233 (244)
                      .+-+-.+|||||+|.+|    +.-...+ +.+  +.+|.+ +|+++.. .+++.+.|       +...  ...+++++++
T Consensus        12 ~~~k~irvgiIG~G~~~~~~~~~h~~ai-~~~~~~~~ivav~d~~~~~-~~~~~~~~-------~~~~--~~~~~~~~~l   80 (237)
T d2nvwa1          12 PSSRPIRVGFVGLTSGKSWVAKTHFLAI-QQLSSQFQIVALYNPTLKS-SLQTIEQL-------QLKH--ATGFDSLESF   80 (237)
T ss_dssp             GGGCCEEEEEECCCSTTSHHHHTHHHHH-HHTTTTEEEEEEECSCHHH-HHHHHHHT-------TCTT--CEEESCHHHH
T ss_pred             CCCCCeEEEEEecCccccHHHHHHHHHH-HhcCCCeEEEEEEcCCHHH-HHHHHHhc-------cccc--ceeecchhhc
Confidence            34455799999999854    4444444 333  678775 6776543 23333332       1111  2235799999


Q ss_pred             hhh--CCEEEEe
Q 026023          234 LRE--ADVVCTL  243 (244)
Q Consensus       234 l~~--sD~Vvl~  243 (244)
                      ++.  -|+|+++
T Consensus        81 ~~~~~iD~V~i~   92 (237)
T d2nvwa1          81 AQYKDIDMIVVS   92 (237)
T ss_dssp             HHCTTCSEEEEC
T ss_pred             ccccccceeecc
Confidence            975  5677765

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=93.46  E-value=0.04  Score=35.78  Aligned_cols=37  Identities=19%  Similarity=0.317  Sum_probs=32.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .|.+|.|.|. |.+|....+.+ +.+|++|++..++++.
T Consensus        31 ~~~~vlI~gasGgVG~~aiQla-k~~G~~Vi~~t~s~~k   68 (77)
T d1o8ca2          31 QDGEIVVTGASGGVGSTAVALL-HKLGYQVVAVSGREST   68 (77)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHH-HHTTCCEEEEESCGGG
T ss_pred             CCCcEEEEeCCCcHHHHHHHHH-HHcCCeEEEEECCHHH
Confidence            5678999876 99999999995 9999999999998755

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=93.42  E-value=0.034  Score=43.88  Aligned_cols=38  Identities=29%  Similarity=0.323  Sum_probs=34.7

Q ss_pred             cCCCEEEEEcCCh-HHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          163 LKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       163 l~g~tvgIvG~G~-IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      |.||++.|.|.++ ||+++|+.| ..-|++|...+|+.+.
T Consensus         3 l~gK~alItGas~GIG~aia~~l-~~~G~~V~~~~r~~~~   41 (241)
T d2a4ka1           3 LSGKTILVTGAASGIGRAALDLF-AREGASLVAVDREERL   41 (241)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            8999999998877 999999999 7999999999998754

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=93.40  E-value=0.04  Score=41.23  Aligned_cols=38  Identities=18%  Similarity=0.172  Sum_probs=33.6

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcch
Q 026023          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (244)
Q Consensus       163 l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~  201 (244)
                      -.|.+|.|+|.|.+|...++.+ +++|+ +|++.|++...
T Consensus        26 ~~G~~VlV~GaGgvGl~a~~~a-k~~G~~~Vi~~d~~~~k   64 (174)
T d1p0fa2          26 TPGSTCAVFGLGGVGFSAIVGC-KAAGASRIIGVGTHKDK   64 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHH-HHHTCSEEEEECSCGGG
T ss_pred             CCCCEEEEECCCchhHHHHHHH-HHcCCceeeccCChHHH
Confidence            4678999999999999999995 99997 79999988654

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=93.38  E-value=0.056  Score=38.09  Aligned_cols=32  Identities=13%  Similarity=0.046  Sum_probs=24.8

Q ss_pred             CEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      |.+-|+|+|++|+.+++.| +..+..  +++..+.
T Consensus         1 kHivI~G~g~~g~~l~~~L-~~~~i~--vi~~d~~   32 (129)
T d2fy8a1           1 RHVVICGWSESTLECLREL-RGSEVF--VLAEDEN   32 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTS-CGGGEE--EEESCTT
T ss_pred             CEEEEECCCHHHHHHHHHH-cCCCCE--EEEcchH
Confidence            4588999999999999998 877654  4555443

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.38  E-value=0.057  Score=37.75  Aligned_cols=59  Identities=14%  Similarity=0.208  Sum_probs=45.6

Q ss_pred             CEEEEEcC----ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023          166 QTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC  241 (244)
Q Consensus       166 ~tvgIvG~----G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv  241 (244)
                      |+|.|+|.    |+.|..+.+.| +.+|.+|+.++|+..+  .                 .+..-+.++.|+=..-|.++
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L-~~~g~~V~pVnP~~~~--i-----------------~G~~~y~sl~~lp~~~D~vv   61 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDL-LSKGFEVLPVNPNYDE--I-----------------EGLKCYRSVRELPKDVDVIV   61 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHH-HHTTCEEEEECTTCSE--E-----------------TTEECBSSGGGSCTTCCEEE
T ss_pred             cEEEEEcccCCCCCcHHHHHHHH-HHCCCEEEEEcccccc--c-----------------cCccccccchhccccceEEE
Confidence            68999994    68899999998 8999999999987543  0                 12223467888888889988


Q ss_pred             EeC
Q 026023          242 TLC  244 (244)
Q Consensus       242 l~~  244 (244)
                      +.+
T Consensus        62 i~v   64 (116)
T d1y81a1          62 FVV   64 (116)
T ss_dssp             ECS
T ss_pred             EEe
Confidence            753

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=93.35  E-value=0.04  Score=43.83  Aligned_cols=39  Identities=15%  Similarity=-0.009  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEcCCh-HHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~G~-IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +|.||++.|-|.++ ||+++|+.| ..-|++|+...|+...
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~l-a~~G~~vii~~r~~~~   41 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSREL-VKRNLKNFVILDRVEN   41 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHH-HHTCCSEEEEEESSCC
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHH-HHCCCEEEEEECCccc
Confidence            58999999999875 999999999 6999998888776543

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.27  E-value=0.024  Score=44.15  Aligned_cols=73  Identities=12%  Similarity=0.177  Sum_probs=48.0

Q ss_pred             cCCCEEEEEc-CChHHHHHHHHHhccCCc--EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023          163 LKGQTVGVIG-AGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (244)
Q Consensus       163 l~g~tvgIvG-~G~IG~~vA~~la~afG~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~  239 (244)
                      ..+++|.|.| .|-||+.+++.| ..-|.  +|..++|++.....+....       ...........+++.+.++.+|+
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~L-l~~g~~~~v~~~~R~~~~~~~~~~~~-------i~~~~~D~~~~~~~~~~~~~~d~   83 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEI-LEQGLFSKVTLIGRRKLTFDEEAYKN-------VNQEVVDFEKLDDYASAFQGHDV   83 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHH-HHHTCCSEEEEEESSCCCCCSGGGGG-------CEEEECCGGGGGGGGGGGSSCSE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHH-HhCCCCCEEEEEecChhhhcccccce-------eeeeeeccccccccccccccccc
Confidence            5778999997 799999999998 56674  8999999764322211111       00011123334577788899999


Q ss_pred             EEEe
Q 026023          240 VCTL  243 (244)
Q Consensus       240 Vvl~  243 (244)
                      |+.+
T Consensus        84 vi~~   87 (232)
T d2bkaa1          84 GFCC   87 (232)
T ss_dssp             EEEC
T ss_pred             cccc
Confidence            8754

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=93.18  E-value=0.041  Score=37.69  Aligned_cols=40  Identities=23%  Similarity=0.347  Sum_probs=33.4

Q ss_pred             ccccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       160 ~~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      ..+.+||+|+|||.|+.|..+|.-| ....-++++..+++.
T Consensus        27 ~~~f~gK~VlVVG~g~Sa~dia~~l-~~~ak~v~~~~~r~~   66 (107)
T d2gv8a2          27 PELFVGESVLVVGGASSANDLVRHL-TPVAKHPIYQSLLGG   66 (107)
T ss_dssp             GGGGTTCCEEEECSSHHHHHHHHHH-TTTSCSSEEEECTTC
T ss_pred             hhhcCCCeEEEECCCCCHHHHHHHH-HHhcCEEEEEEecCc
Confidence            3568999999999999999999998 688888776666543

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=93.17  E-value=0.092  Score=39.13  Aligned_cols=74  Identities=14%  Similarity=0.185  Sum_probs=44.9

Q ss_pred             CEEEEEcCChHHHH--HHHHHh--ccCC-cEEEEEcCCcchHH--HHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCC
Q 026023          166 QTVGVIGAGRIGSA--YARMMV--EGFK-MNLIYYDLYQATRL--EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (244)
Q Consensus       166 ~tvgIvG~G~IG~~--vA~~la--~afG-~~V~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (244)
                      -+|.|+|.|.+|..  +...++  ..|. -++..+|..+....  .+..+.+...    ...........+.+|.++.||
T Consensus         4 ~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~----~~~~~~~~~~~d~~eal~~AD   79 (167)
T d1u8xx1           4 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIRE----KAPDIEFAATTDPEEAFTDVD   79 (167)
T ss_dssp             EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHH----HCTTSEEEEESCHHHHHSSCS
T ss_pred             ceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHH----hCCCcceEecCChhhccCCCC
Confidence            47999999988743  333331  2332 47999998865421  2222222111    112333445568999999999


Q ss_pred             EEEEe
Q 026023          239 VVCTL  243 (244)
Q Consensus       239 ~Vvl~  243 (244)
                      +|+++
T Consensus        80 ~Vvit   84 (167)
T d1u8xx1          80 FVMAH   84 (167)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99986

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=93.11  E-value=0.091  Score=43.03  Aligned_cols=37  Identities=19%  Similarity=0.270  Sum_probs=32.5

Q ss_pred             CCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +.|||.|+| .|.||+.+++.| ..-|.+|.+..|++..
T Consensus         2 ~kktIlVtGatG~iG~~lv~~L-l~~G~~V~~l~R~~~~   39 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVA-AAVGHHVRAQVHSLKG   39 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHH-HHTTCCEEEEESCSCS
T ss_pred             CCCEEEEECCChHHHHHHHHHH-HhCCCeEEEEECCcch
Confidence            357999999 699999999998 7889999999997654

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=93.04  E-value=0.027  Score=44.88  Aligned_cols=39  Identities=23%  Similarity=0.321  Sum_probs=34.2

Q ss_pred             ccCCCEEEEEcCC-hHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~G-~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .|.||++.|-|.+ .||+++|+.| ..-|++|...+|+...
T Consensus         8 ~L~gK~alITGas~GIG~aia~~l-a~~Ga~V~~~~r~~~~   47 (255)
T d1fmca_           8 RLDGKCAIITGAGAGIGKEIAITF-ATAGASVVVSDINADA   47 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHH-HTTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            5899999999875 5999999999 6999999999987643

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=93.00  E-value=0.068  Score=42.50  Aligned_cols=38  Identities=21%  Similarity=0.267  Sum_probs=33.9

Q ss_pred             cCCCEEEEEcCCh-HHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          163 LKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       163 l~g~tvgIvG~G~-IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      |.||++.|-|.++ ||+++|+.| ..-|++|...+|+...
T Consensus         2 l~gK~alITGas~GIG~aia~~l-a~~Ga~V~i~~r~~~~   40 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRL-AAEGAKLSLVDVSSEG   40 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            7899999998764 999999999 6999999999998754

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.99  E-value=0.11  Score=37.94  Aligned_cols=75  Identities=16%  Similarity=0.068  Sum_probs=45.4

Q ss_pred             EEEEEc-CChHHHHHHHHHhc--cCC----cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023          167 TVGVIG-AGRIGSAYARMMVE--GFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (244)
Q Consensus       167 tvgIvG-~G~IG~~vA~~la~--afG----~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~  239 (244)
                      +|.|+| .|++|+.+|-.|+.  -||    ..+..+|........+..+- .... .............+.++.+++||+
T Consensus         5 KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~dv   82 (154)
T d5mdha1           5 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLM-ELQD-CALPLLKDVIATDKEEIAFKDLDV   82 (154)
T ss_dssp             EEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHH-HHHH-TCCTTEEEEEEESCHHHHTTTCSE
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhh-hhcc-cccccccccccCcccccccCCceE
Confidence            899999 59999999988732  244    25778887654432222210 0000 011111123344688999999999


Q ss_pred             EEEe
Q 026023          240 VCTL  243 (244)
Q Consensus       240 Vvl~  243 (244)
                      |++.
T Consensus        83 VVit   86 (154)
T d5mdha1          83 AILV   86 (154)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            9985

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.95  E-value=0.035  Score=43.71  Aligned_cols=40  Identities=20%  Similarity=0.149  Sum_probs=35.2

Q ss_pred             cccCCCEEEEEcCCh-HHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~-IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ++|.||++.|-|.+. ||+++|+.| ..-|++|...+|+...
T Consensus         3 psl~gK~~lITGas~GIG~aia~~l-a~~Ga~V~~~~r~~~~   43 (237)
T d1uzma1           3 PPFVSRSVLVTGGNRGIGLAIAQRL-AADGHKVAVTHRGSGA   43 (237)
T ss_dssp             CCCCCCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESSSCC
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCcch
Confidence            358999999999875 999999999 6999999999997654

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=92.93  E-value=0.064  Score=42.56  Aligned_cols=76  Identities=16%  Similarity=0.167  Sum_probs=45.9

Q ss_pred             CEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCC--ccccccCCHHHHhhhCCEEEE
Q 026023          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--VTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       166 ~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      ++|.|.| .|.||+.+++.| ..-|.+|.+.+|+............ ......+...  ......+++.+.++.+|.++.
T Consensus         4 ~KILVtGatG~iG~~l~~~L-~~~G~~V~~~~R~~~~~~~~~~~~~-~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~   81 (312)
T d1qyda_           4 SRVLIVGGTGYIGKRIVNAS-ISLGHPTYVLFRPEVVSNIDKVQML-LYFKQLGAKLIEASLDDHQRLVDALKQVDVVIS   81 (312)
T ss_dssp             CCEEEESTTSTTHHHHHHHH-HHTTCCEEEECCSCCSSCHHHHHHH-HHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHH-HhCCCEEEEEECCCcccchhHHHHH-hhhccCCcEEEEeecccchhhhhhccCcchhhh
Confidence            4699999 699999999998 7889999999997543111100000 0011111111  112233457788888888775


Q ss_pred             e
Q 026023          243 L  243 (244)
Q Consensus       243 ~  243 (244)
                      +
T Consensus        82 ~   82 (312)
T d1qyda_          82 A   82 (312)
T ss_dssp             C
T ss_pred             h
Confidence            4

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=92.92  E-value=0.024  Score=42.63  Aligned_cols=34  Identities=24%  Similarity=0.363  Sum_probs=28.1

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcC-Ccch
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDL-YQAT  201 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~-~~~~  201 (244)
                      +|||=|||+||+.+.|.+ ...+.+|.+.+- ....
T Consensus         2 kIgINGfGRIGR~~~R~~-~~~~~~ivaINd~~~~~   36 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAA-LEMGAQVVAVNDPFIAL   36 (169)
T ss_dssp             CEEEECCSHHHHHHHHHH-HHHTCCEEEEECTTSCH
T ss_pred             eEEEECCcHHHHHHHHHH-HhCCCcEEEECCCCcCH
Confidence            689999999999999996 677888888865 4443

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=92.81  E-value=0.044  Score=44.07  Aligned_cols=39  Identities=18%  Similarity=0.163  Sum_probs=34.2

Q ss_pred             cccCCCEEEEEcCC---hHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          161 NLLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       161 ~~l~g~tvgIvG~G---~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      .+|+||++.|-|.+   -||+++|+.| ..-|++|+..++++.
T Consensus         4 ~~L~gK~alVTGass~~GIG~aiA~~l-a~~Ga~Vvi~~~~~~   45 (297)
T d1d7oa_           4 IDLRGKRAFIAGIADDNGYGWAVAKSL-AAAGAEILVGTWVPA   45 (297)
T ss_dssp             CCCTTCEEEEECCSSSSSHHHHHHHHH-HHTTCEEEEEEEHHH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHH-HHCCCEEEEEeCchh
Confidence            46999999999986   4999999999 689999999887653

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=92.79  E-value=0.05  Score=42.93  Aligned_cols=39  Identities=26%  Similarity=0.315  Sum_probs=34.2

Q ss_pred             ccCCCEEEEEcCC-hHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~G-~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .|.||++.|-|.+ .||+++|+.| ..-|++|+..+|+...
T Consensus         2 ~L~gK~~lITGas~GIG~aia~~l-~~~G~~V~~~~r~~~~   41 (242)
T d1ulsa_           2 RLKDKAVLITGAAHGIGRATLELF-AKEGARLVACDIEEGP   41 (242)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            3899999999975 5999999999 6999999999998644

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=92.78  E-value=0.1  Score=38.96  Aligned_cols=37  Identities=22%  Similarity=0.183  Sum_probs=32.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .|++|.|.|. |.+|+..++. |+..|++|++.++++..
T Consensus        29 ~G~~VlV~ga~ggvG~~aiql-ak~~Ga~vi~~~~~~~~   66 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQI-AKLKGCKVVGAAGSDEK   66 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHH-HHHTTCEEEEEESSHHH
T ss_pred             CCCEEEEEeCCCchhHHHHHH-HHccCCEEEEeCCCHHH
Confidence            5889999988 6699999999 59999999999987643

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=92.69  E-value=0.15  Score=38.38  Aligned_cols=39  Identities=21%  Similarity=0.320  Sum_probs=35.3

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      ....+|+|.|||.|..|-+.|..| ...|.+|..|++.+.
T Consensus        39 ~~~~~k~V~IIGaGPAGL~AA~~l-a~~G~~Vtl~E~~~~   77 (179)
T d1ps9a3          39 PAVQKKNLAVVGAGPAGLAFAINA-AARGHQVTLFDAHSE   77 (179)
T ss_dssp             SCSSCCEEEEECCSHHHHHHHHHH-HTTTCEEEEEESSSS
T ss_pred             CCCCCcEEEEECccHHHHHHHHHH-HhhccceEEEeccCc
Confidence            456889999999999999999998 799999999999753

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=92.64  E-value=0.048  Score=40.99  Aligned_cols=33  Identities=24%  Similarity=0.447  Sum_probs=25.3

Q ss_pred             EEEEEcCChHHHHHHHHHhcc---CCcEEEEEcCCcc
Q 026023          167 TVGVIGAGRIGSAYARMMVEG---FKMNLIYYDLYQA  200 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~a---fG~~V~~~~~~~~  200 (244)
                      +|||=|||+||+.+.|.+ ..   -..+|.+.+....
T Consensus         2 kIgINGfGRIGR~v~R~~-~~~~~~~i~ivaINd~~~   37 (172)
T d1rm4a1           2 KVAINGFGRIGRNFLRCW-HGRKDSPLDVVVINDTGG   37 (172)
T ss_dssp             EEEEECCSHHHHHHHHHH-HHCSSCSEEEEEEECTTC
T ss_pred             EEEEECCCHHHHHHHHHH-HhCCCCCEEEEEEcCCCC
Confidence            799999999999999975 33   3377777766543

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=92.64  E-value=0.059  Score=40.39  Aligned_cols=34  Identities=24%  Similarity=0.375  Sum_probs=26.8

Q ss_pred             EEEEEcCChHHHHHHHHHhc--cCCcEEEEEcCCcc
Q 026023          167 TVGVIGAGRIGSAYARMMVE--GFKMNLIYYDLYQA  200 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~--afG~~V~~~~~~~~  200 (244)
                      +|||=|||+||+.+.|.+..  -.+.+|.+.+....
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~vvaINd~~~   37 (169)
T d1hdgo1           2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTD   37 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECSSC
T ss_pred             EEEEECCChHHHHHHHHHHhccCCCEEEEEeccCcc
Confidence            79999999999999998522  34689888876543

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.60  E-value=0.12  Score=38.09  Aligned_cols=72  Identities=17%  Similarity=0.218  Sum_probs=44.0

Q ss_pred             EEEEEcCChHHHHHH-----HHHhccCC-cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEE
Q 026023          167 TVGVIGAGRIGSAYA-----RMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVV  240 (244)
Q Consensus       167 tvgIvG~G~IG~~vA-----~~la~afG-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~V  240 (244)
                      +|.|+|.|++|...+     +.. ..+. -++..+|..+... +...+..    .+............+.++.++.||+|
T Consensus         2 KIaiIGaGs~g~~~~~~~l~~~~-~~~~~~el~L~Did~~k~-~~~~d~~----~~~~~~~~~~~~t~~~~~~l~~aDvV   75 (162)
T d1up7a1           2 RIAVIGGGSSYTPELVKGLLDIS-EDVRIDEVIFYDIDEEKQ-KIVVDFV----KRLVKDRFKVLISDTFEGAVVDAKYV   75 (162)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHHT-TTSCCCEEEEECSCHHHH-HHHHHHH----HHHHTTSSEEEECSSHHHHHTTCSEE
T ss_pred             EEEEECCCHHHHHHHHHHHHhcc-cccCccEEEEEecCcHHH-HHHHHHH----HhhhccCceEEEecCcccccCCCCEE
Confidence            699999998885554     332 2333 4799999986542 2211111    11111223344456899999999999


Q ss_pred             EEeC
Q 026023          241 CTLC  244 (244)
Q Consensus       241 vl~~  244 (244)
                      ++++
T Consensus        76 Vita   79 (162)
T d1up7a1          76 IFQF   79 (162)
T ss_dssp             EECC
T ss_pred             EEec
Confidence            9863

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=92.55  E-value=0.041  Score=43.50  Aligned_cols=39  Identities=23%  Similarity=0.213  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEcCC-hHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~G-~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +|.||++.|-|.+ .||+++|++| ..-|++|+.++|+...
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l-~~~G~~Vv~~~r~~~~   40 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETL-AARGAKVIGTATSENG   40 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHH-HHTTCEEEEEESSHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHH-HHcCCEEEEEeCCHHH
Confidence            4789999999865 5999999999 6899999999998643

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=92.54  E-value=0.23  Score=36.35  Aligned_cols=37  Identities=22%  Similarity=0.248  Sum_probs=31.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcch
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~  201 (244)
                      .|.+|.|+|.|-+|...++.+ +.+|+ +|+..++++..
T Consensus        28 ~G~tVlI~GaGGvG~~aiq~a-k~~G~~~vi~~~~~~~k   65 (176)
T d2fzwa2          28 PGSVCAVFGLGGVGLAVIMGC-KVAGASRIIGVDINKDK   65 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHTCSEEEEECSCGGG
T ss_pred             CCCEEEEecchhHHHHHHHHH-HHHhcCceEEEcccHHH
Confidence            678999999999999999995 99997 57777776644

>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=92.51  E-value=0.59  Score=34.52  Aligned_cols=111  Identities=14%  Similarity=0.050  Sum_probs=68.6

Q ss_pred             CCeEEEEeCC---CCc---hHHHHHHHhCCCeEEEeccCCCCCCHHHHHHH-hcCCccEEEeccCc----cccHHHHHHh
Q 026023           14 GKYRVVSTKP---MPG---TRWINLLIEQDCRVEICTQKKTILSVEDIIAL-IGDKCDGVIGQLTE----DWGETLFAAL   82 (244)
Q Consensus        14 ~~~~ilv~~~---~~~---~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~ad~ii~~~~~----~~~~~~l~~~   82 (244)
                      .++||++...   .++   ......|+..|++|.+....   .+.+++.+. ..+++|++.++...    ..-+++.+.+
T Consensus        36 r~pkVlla~~g~D~Hd~G~~~va~~l~~~G~eVi~lg~~---~~~e~iv~aa~~~~advI~iSs~~~~~~~~~~~l~~~L  112 (168)
T d7reqa2          36 RRPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLF---QTPEETARQAVEADVHVVGVSSLAGGHLTLVPALRKEL  112 (168)
T ss_dssp             SCCEEEEECBTTCCCCHHHHHHHHHHHHTTCEEEECCTT---BCHHHHHHHHHHHTCSEEEEEECSSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEeCCccHHHHHHHHHHHHHHhCCcceecCCCc---CcHHHHHHHHHccCCCEEEEecCcccchHHHHHHHHHH
Confidence            4678877642   222   12334467789999765432   377888765 44479988765332    2335566667


Q ss_pred             hccCCcEEEEcccC-CCccChHHHhhCCcEEEecCCCCCcchHHHH
Q 026023           83 SRAGGKAFSNMAVG-YNNVDVNAANKYGIAVGNTPGVLTETTAELA  127 (244)
Q Consensus        83 p~l~~k~I~~~~aG-~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~  127 (244)
                      .+.|..-|.....| +..-|.+.+.+.|+.-+-.||.....+|...
T Consensus       113 ~~~g~~~v~VivGG~ip~~d~~~l~~~Gv~~iF~pgt~~~e~a~~~  158 (168)
T d7reqa2         113 DKLGRPDILITVGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISL  158 (168)
T ss_dssp             HHTTCTTSEEEEEESCCGGGHHHHHHHTEEEEECTTCCHHHHHHHH
T ss_pred             HhcCCCCeEEEEeCCCCHHHHHHHHhCCCCEEECcCCCHHHHHHHH
Confidence            66654323333444 4677888899999998888887644444443

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=92.49  E-value=0.057  Score=40.46  Aligned_cols=35  Identities=29%  Similarity=0.423  Sum_probs=26.6

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcC-Ccch
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDL-YQAT  201 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~-~~~~  201 (244)
                      +|||=|||+||+.+.|.+..-=..+|.+.+- ....
T Consensus         3 kIgINGFGRIGR~v~R~~~~~~~~~ivaINd~~~~~   38 (169)
T d1u8fo1           3 KVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDL   38 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCH
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCcEEEEecCCCccH
Confidence            7999999999999999763333578888765 4443

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.31  E-value=0.086  Score=38.06  Aligned_cols=60  Identities=12%  Similarity=0.108  Sum_probs=47.4

Q ss_pred             CCCEEEEEcC----ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023          164 KGQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (244)
Q Consensus       164 ~g~tvgIvG~----G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~  239 (244)
                      .-|+|.|||.    |+.|..+++.| +.+|.+|+.++|...+                   -.+..-+.++.++-..-|+
T Consensus        18 ~~ksIAVVGaS~~~~~~g~~v~~~L-~~~g~~v~pVnP~~~~-------------------i~G~~~~~sl~dlp~~iD~   77 (139)
T d2d59a1          18 RYKKIALVGASPKPERDANIVMKYL-LEHGYDVYPVNPKYEE-------------------VLGRKCYPSVLDIPDKIEV   77 (139)
T ss_dssp             HCCEEEEETCCSCTTSHHHHHHHHH-HHTTCEEEEECTTCSE-------------------ETTEECBSSGGGCSSCCSE
T ss_pred             cCCeEEEEeecCCCCCchHHHHHHH-HHCCCEEEEECCcccc-------------------cCCCcccccccccCccceE
Confidence            4689999996    57999999998 8999999999987543                   1112234688888888999


Q ss_pred             EEEe
Q 026023          240 VCTL  243 (244)
Q Consensus       240 Vvl~  243 (244)
                      +++.
T Consensus        78 v~i~   81 (139)
T d2d59a1          78 VDLF   81 (139)
T ss_dssp             EEEC
T ss_pred             EEEE
Confidence            8875

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=92.29  E-value=0.054  Score=42.63  Aligned_cols=37  Identities=22%  Similarity=0.237  Sum_probs=33.3

Q ss_pred             cCCCEEEEEcCCh---HHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          163 LKGQTVGVIGAGR---IGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       163 l~g~tvgIvG~G~---IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      |.||++.|-|.+.   ||+++|+.| ..-|++|+..+++.+
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l-~~~G~~V~i~~~~~~   42 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAM-HREGAELAFTYQNDK   42 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHH-HHTTCEEEEEESSTT
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHH-HHcCCEEEEEeCCHH
Confidence            8999999999865   999999999 799999999998754

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=92.13  E-value=0.12  Score=37.74  Aligned_cols=74  Identities=18%  Similarity=0.144  Sum_probs=41.0

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhcc---CCc----EEEEEcCCcchHHHHHH-hhhhhhhhcCCCCCccccccCCHHHHhhh
Q 026023          166 QTVGVIGA-GRIGSAYARMMVEG---FKM----NLIYYDLYQATRLEKFV-TAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (244)
Q Consensus       166 ~tvgIvG~-G~IG~~vA~~la~a---fG~----~V~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~ell~~  236 (244)
                      .+|.|+|. |++|+.+|-.| ..   ||-    ....++........+.. ....   .............++.++.++.
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l-~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~   80 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRI-AAGEMLGKDQPVILQLLEIPQAMKALEGVVMELE---DCAFPLLAGLEATDDPKVAFKD   80 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHH-HTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHH---TTTCTTEEEEEEESCHHHHTTT
T ss_pred             CEEEEECCCCHHHHHHHHHH-HhccccccccchhHhHhccccchhhHcCchhhhh---ccccccccccccCCchhhhccc
Confidence            38999996 99999999987 33   331    22333333222111111 0000   0011111223344688999999


Q ss_pred             CCEEEEe
Q 026023          237 ADVVCTL  243 (244)
Q Consensus       237 sD~Vvl~  243 (244)
                      ||+|++.
T Consensus        81 advViit   87 (154)
T d1y7ta1          81 ADYALLV   87 (154)
T ss_dssp             CSEEEEC
T ss_pred             ccEEEee
Confidence            9999985

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.11  E-value=0.11  Score=37.01  Aligned_cols=62  Identities=16%  Similarity=0.262  Sum_probs=46.9

Q ss_pred             cCCCEEEEEcC----ChHHHHHHHHHhccCC-cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhC
Q 026023          163 LKGQTVGVIGA----GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (244)
Q Consensus       163 l~g~tvgIvG~----G~IG~~vA~~la~afG-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s  237 (244)
                      +.-++|.|||.    |+.|..+.+.| +..| -+|+.++|+..+  .                 .+..-+.++.|+=..-
T Consensus         6 f~PksIAVVGaS~~~~~~g~~v~~~L-~~~~~g~v~pVnP~~~~--i-----------------~G~~~y~sl~dlp~~v   65 (129)
T d2csua1           6 FNPKGIAVIGASNDPKKLGYEVFKNL-KEYKKGKVYPVNIKEEE--V-----------------QGVKAYKSVKDIPDEI   65 (129)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHH-TTCCSSEEEEECSSCSE--E-----------------TTEECBSSTTSCSSCC
T ss_pred             CCCCeEEEEccCCCCCCcHHHHHHHH-HHcCCCcEEEeccCccc--c-----------------CCeEeecchhhcCCCC
Confidence            56689999997    89999999998 6655 699999997644  1                 1222346788887788


Q ss_pred             CEEEEeC
Q 026023          238 DVVCTLC  244 (244)
Q Consensus       238 D~Vvl~~  244 (244)
                      |.+++.+
T Consensus        66 Dlvvi~v   72 (129)
T d2csua1          66 DLAIIVV   72 (129)
T ss_dssp             SEEEECS
T ss_pred             ceEEEec
Confidence            9988753

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.11  E-value=0.066  Score=42.31  Aligned_cols=39  Identities=21%  Similarity=0.338  Sum_probs=34.2

Q ss_pred             ccCCCEEEEEcCC-hHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~G-~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .|.||++.|-|.+ .||+++|+.| ..-|++|+..+|+...
T Consensus         3 ~L~gK~alITGas~GIG~aia~~l-a~~G~~V~~~~r~~~~   42 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAM-VAEGAKVVFGDILDEE   42 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            3899999999874 5999999999 6999999999998644

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=92.06  E-value=0.075  Score=38.50  Aligned_cols=34  Identities=9%  Similarity=-0.050  Sum_probs=30.6

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .+-|+|+|++|+.+++.| ...|.+|..++..+..
T Consensus         5 HiII~G~g~~g~~l~~~L-~~~~~~v~vId~d~~~   38 (153)
T d1id1a_           5 HFIVCGHSILAINTILQL-NQRGQNVTVISNLPED   38 (153)
T ss_dssp             CEEEECCSHHHHHHHHHH-HHTTCCEEEEECCCHH
T ss_pred             EEEEECCCHHHHHHHHHH-HHcCCCEEEEeccchh
Confidence            489999999999999999 8999999999987653

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=92.01  E-value=0.043  Score=41.09  Aligned_cols=33  Identities=24%  Similarity=0.405  Sum_probs=27.9

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      +|||=|||+||+.+.|.| ..=+.+|.+.+....
T Consensus         2 kigINGfGRIGR~~~R~l-~~~~i~iv~INd~~~   34 (168)
T d2g82a1           2 KVGINGFGRIGRQVFRIL-HSRGVEVALINDLTD   34 (168)
T ss_dssp             EEEEECCSHHHHHHHHHH-HHHTCCEEEEECSSC
T ss_pred             EEEEECCcHHHHHHHHHH-hcCCCEEEEECCCcc
Confidence            799999999999999987 566888888887543

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=91.94  E-value=0.11  Score=40.76  Aligned_cols=36  Identities=19%  Similarity=0.169  Sum_probs=31.2

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       165 g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      -|+|.|.|. |.||+.+++.| ..-|.+|.+++|.+..
T Consensus         3 kkKILVtGatG~iG~~l~~~L-~~~G~~V~~l~R~~~~   39 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKAS-LDLGHPTFLLVRESTA   39 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHH-HHTTCCEEEECCCCCT
T ss_pred             CCEEEEECCCcHHHHHHHHHH-HHCCCeEEEEECCCcc
Confidence            468999995 99999999998 6789999999997644

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=91.92  E-value=0.084  Score=39.57  Aligned_cols=34  Identities=24%  Similarity=0.384  Sum_probs=27.1

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      +|||=|||+||+.+.|.+..--+.+|.+.+....
T Consensus         3 kIgINGfGRIGR~v~R~~l~~~~~~ivaINd~~d   36 (171)
T d3cmco1           3 KVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTD   36 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHTTCTTEEEEEEECSSC
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCcEEEEEcCCCC
Confidence            7999999999999999863333678888886543

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.89  E-value=0.069  Score=42.67  Aligned_cols=38  Identities=21%  Similarity=0.271  Sum_probs=32.8

Q ss_pred             CCCEEEEE--cCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          164 KGQTVGVI--GAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIv--G~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .||+|.||  |-+-||+++|+.|++..|++|+.++|+...
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~   40 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTR   40 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHH
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence            48899988  778899999999866679999999998754

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=91.72  E-value=0.08  Score=43.22  Aligned_cols=38  Identities=24%  Similarity=0.281  Sum_probs=34.0

Q ss_pred             cCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          163 LKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       163 l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .+||+|.|.| .|-||+.+++.| ..-|.+|.+++|+...
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~L-l~~g~~V~~~~r~~~~   44 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWL-QTMGATVKGYSLTAPT   44 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSCSS
T ss_pred             hCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEECCCCc
Confidence            4789999998 789999999999 7999999999997653

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=91.65  E-value=0.082  Score=36.52  Aligned_cols=36  Identities=11%  Similarity=0.030  Sum_probs=29.2

Q ss_pred             CCEEEEEcCChHHHHHHHHHh--ccCCcEEEEEcCCcc
Q 026023          165 GQTVGVIGAGRIGSAYARMMV--EGFKMNLIYYDLYQA  200 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la--~afG~~V~~~~~~~~  200 (244)
                      .+++.|+|.|.||-++|..|+  +..|.+|..+.+.++
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~   55 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDM   55 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceeccccc
Confidence            479999999999999997641  356899999988654

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=91.63  E-value=0.081  Score=42.15  Aligned_cols=39  Identities=15%  Similarity=0.321  Sum_probs=33.7

Q ss_pred             ccCCCEEEEEcCC-hHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~G-~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .|.||++.|-|.+ .||+++|+.| ..-|++|+..+|+...
T Consensus         3 rL~gKvalITGas~GIG~aia~~l-a~~Ga~V~i~~r~~~~   42 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLF-VRYGAKVVIADIADDH   42 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            3899999999865 4999999999 6889999999997643

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.63  E-value=0.26  Score=35.25  Aligned_cols=31  Identities=29%  Similarity=0.552  Sum_probs=24.5

Q ss_pred             EEEEEc-CChHHHHHHHHHhccCCcEEE-EEcC
Q 026023          167 TVGVIG-AGRIGSAYARMMVEGFKMNLI-YYDL  197 (244)
Q Consensus       167 tvgIvG-~G~IG~~vA~~la~afG~~V~-~~~~  197 (244)
                      +|+|+| .|+.|+++++.+.+.=++++. ++|+
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~   33 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDA   33 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECT
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEec
Confidence            689999 699999999986566778754 4554

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.60  E-value=0.072  Score=43.18  Aligned_cols=33  Identities=18%  Similarity=0.198  Sum_probs=28.1

Q ss_pred             CEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (244)
Q Consensus       166 ~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~  199 (244)
                      |+|.|.| .|-||+.+++.| ..-|.+|+++|+..
T Consensus         2 KKIlVtG~sGfiG~~lv~~L-~~~g~~V~~~d~~~   35 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKL-MMDGHEVTVVDNFF   35 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECCS
T ss_pred             CEEEEECCCcHHHHHHHHHH-HHCcCEEEEEeCCC
Confidence            6788885 688999999998 77899999998743

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=91.54  E-value=0.15  Score=37.39  Aligned_cols=72  Identities=19%  Similarity=0.385  Sum_probs=46.9

Q ss_pred             cCCCEEEEEcC---ChHHHHHHHHHhccCCc-EEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCC
Q 026023          163 LKGQTVGVIGA---GRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (244)
Q Consensus       163 l~g~tvgIvG~---G~IG~~vA~~la~afG~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD  238 (244)
                      +.|.+|+++|=   |++..+++..+ ..||. .++.+.|......+...+    +....   ......+.++++.++++|
T Consensus         2 l~gl~i~~vGD~~nsrv~~Sli~~l-~~~~~~~~~~~~P~~~~~~~~~~~----~~~~~---~~~~~~~~d~~~a~~~aD   73 (160)
T d1ekxa2           2 LDNLHVAMVGDLKYGRTVHSLTQAL-AKFDGNRFYFIAPDALAMPQYILD----MLDEK---GIAWSLHSSIEEVMAEVD   73 (160)
T ss_dssp             SSSCEEEEESCTTTCHHHHHHHHHH-TTSSSCEEEEECCGGGCCCHHHHH----HHHHT---TCCEEECSCSTTTGGGCS
T ss_pred             CCCCEEEEEcCCCccHHHHHHHHHH-HHcCCCeEEeeccchhhhhHHHHH----HHhhh---ccccccccCHHHHhCcCc
Confidence            67999999995   77999999997 79975 566666653321111111    01111   122334578999999999


Q ss_pred             EEEE
Q 026023          239 VVCT  242 (244)
Q Consensus       239 ~Vvl  242 (244)
                      +|..
T Consensus        74 vvy~   77 (160)
T d1ekxa2          74 ILYM   77 (160)
T ss_dssp             EEEE
T ss_pred             eEEe
Confidence            9864

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=91.48  E-value=0.042  Score=43.31  Aligned_cols=38  Identities=26%  Similarity=0.420  Sum_probs=33.7

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCc
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ  199 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~  199 (244)
                      ..|++++|.|+|.|.+|..+|..| ...|. ++..+|...
T Consensus        26 ~kL~~~~VliiG~GglGs~va~~L-a~~Gvg~i~lvD~D~   64 (247)
T d1jw9b_          26 EALKDSRVLIVGLGGLGCAASQYL-ASAGVGNLTLLDFDT   64 (247)
T ss_dssp             HHHHHCEEEEECCSHHHHHHHHHH-HHHTCSEEEEECCCB
T ss_pred             HHHhCCCEEEECCCHHHHHHHHHH-HHcCCCeEEEECCcc
Confidence            359999999999999999999999 69999 788888653

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.46  E-value=0.082  Score=42.97  Aligned_cols=39  Identities=26%  Similarity=0.315  Sum_probs=34.5

Q ss_pred             ccCCCEEEEEcCCh-HHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~G~-IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .|.||++.|-|.+. ||+++|+.| ..-|++|+..+|+...
T Consensus         9 ~L~gKvalITGas~GIG~aia~~l-a~~Ga~Vvi~~r~~~~   48 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKEL-LELGSNVVIASRKLER   48 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            59999999998755 999999999 6899999999998653

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=91.37  E-value=0.1  Score=38.81  Aligned_cols=35  Identities=20%  Similarity=0.336  Sum_probs=27.3

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcC-Ccch
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDL-YQAT  201 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~-~~~~  201 (244)
                      +|||=|||+||+.+.|.+..-=+.+|.+.+- ....
T Consensus         2 kigINGfGRIGR~v~R~~~~~~~~~iv~INd~~~d~   37 (166)
T d2b4ro1           2 KLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDL   37 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEECTTCCH
T ss_pred             eEEEECCCHHHHHHHHHHhhCCCcEEEEECCCCCCh
Confidence            6999999999999999973333678888864 4444

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=91.35  E-value=0.082  Score=41.90  Aligned_cols=38  Identities=24%  Similarity=0.297  Sum_probs=33.9

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       163 l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      |.||++.|-|. +.||+++|+.| ..-|++|...+|+...
T Consensus         3 L~gK~alVTGas~GIG~aia~~l-a~~Ga~V~~~~r~~~~   41 (256)
T d1k2wa_           3 LDGKTALITGSARGIGRAFAEAY-VREGARVAIADINLEA   41 (256)
T ss_dssp             TTTEEEEEETCSSHHHHHHHHHH-HHTTEEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            89999999987 66999999999 6999999999998643

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=91.31  E-value=0.06  Score=40.48  Aligned_cols=35  Identities=23%  Similarity=0.357  Sum_probs=26.4

Q ss_pred             EEEEEcCChHHHHHHHHHhc---cCCcEEEEEcCCcch
Q 026023          167 TVGVIGAGRIGSAYARMMVE---GFKMNLIYYDLYQAT  201 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~---afG~~V~~~~~~~~~  201 (244)
                      +|||=|||+||+.+.|.+..   .-..+|.+.+.....
T Consensus         3 kigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd~~~~   40 (173)
T d1obfo1           3 RVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDP   40 (173)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECSSCH
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcCCCCh
Confidence            79999999999999998521   225688888875433

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=91.10  E-value=0.2  Score=39.77  Aligned_cols=56  Identities=20%  Similarity=0.130  Sum_probs=40.9

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC  241 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv  241 (244)
                      ...|++|++||+-.    ..+++ +.-|+++..++++++.-                     ..+...-+++|++||+|+
T Consensus       119 ~~~g~kV~vIG~~P----~v~~l-~~~~~~~~VlE~~p~~g---------------------d~p~~~~~~lLp~aD~vi  172 (251)
T d2h1qa1         119 EVKGKKVGVVGHFP----HLESL-LEPICDLSILEWSPEEG---------------------DYPLPASEFILPECDYVY  172 (251)
T ss_dssp             TTTTSEEEEESCCT----THHHH-HTTTSEEEEEESSCCTT---------------------CEEGGGHHHHGGGCSEEE
T ss_pred             ccCCCEEEEEecch----hHHHH-HhcCCcEEEEeCCCCCC---------------------CCCchHHHHhhhcCCEEE
Confidence            34799999998863    33444 57788999999987541                     012246789999999999


Q ss_pred             Ee
Q 026023          242 TL  243 (244)
Q Consensus       242 l~  243 (244)
                      +.
T Consensus       173 iT  174 (251)
T d2h1qa1         173 IT  174 (251)
T ss_dssp             EE
T ss_pred             EE
Confidence            85

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.10  E-value=0.16  Score=37.16  Aligned_cols=37  Identities=22%  Similarity=0.360  Sum_probs=31.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHhccCCc-EEEEEcCCcch
Q 026023          164 KGQTVGVIGA-GRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~-G~IG~~vA~~la~afG~-~V~~~~~~~~~  201 (244)
                      .|.+|.|+|. |.+|...+..+ +++|. +|+..++++..
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~-~~~g~~~V~~~~~~~~~   65 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIA-KAVSGATIIGVDVREEA   65 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHHTCCEEEEEESSHHH
T ss_pred             CCCEEEEEeccccceeeeeecc-cccccccccccccchhh
Confidence            5779999995 99999999996 88995 89999988644

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=90.96  E-value=0.08  Score=41.95  Aligned_cols=39  Identities=21%  Similarity=0.388  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEcCC-hHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~G-~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .|+||++.|-|.+ .||+++|+.| ..-|++|...+++...
T Consensus         3 rL~gK~alITGas~GIG~aia~~l-a~~Ga~V~~~~~~~~~   42 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLL-LGEGAKVAFSDINEAA   42 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEECSCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            3899999999865 5999999999 6999999999997643

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=90.90  E-value=0.098  Score=36.96  Aligned_cols=57  Identities=19%  Similarity=0.226  Sum_probs=37.0

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEE-cCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhh
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  236 (244)
                      +|.|+|+|+.|+.+++.+...-|+++.+| |..+...        |     .....+++...++++++.++
T Consensus         5 ~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~--------G-----~~I~Gi~V~~~~~l~~~~~~   62 (126)
T d2dt5a2           5 GLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKV--------G-----RPVRGGVIEHVDLLPQRVPG   62 (126)
T ss_dssp             EEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTT--------T-----CEETTEEEEEGGGHHHHSTT
T ss_pred             eEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhc--------C-----CEECCEEEecHHHHHHHHhh
Confidence            79999999999999986534557886665 4443321        1     11224455566778777764

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=90.79  E-value=0.12  Score=41.40  Aligned_cols=39  Identities=21%  Similarity=0.234  Sum_probs=34.3

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .|+||++.|-|. +.||+++|+.| ..-|++|+..+|+...
T Consensus         2 ~L~gK~alITGas~GIG~aia~~l-a~~Ga~V~i~~r~~~~   41 (276)
T d1bdba_           2 KLKGEAVLITGGASGLGRALVDRF-VAEGAKVAVLDKSAER   41 (276)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            389999999986 67999999999 6889999999998643

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=90.74  E-value=0.13  Score=40.58  Aligned_cols=36  Identities=19%  Similarity=0.148  Sum_probs=30.1

Q ss_pred             CCEEEEEcCCh-HHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          165 GQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       165 g~tvgIvG~G~-IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ||++.|-|.++ ||+++|+.| ..-|++|+.++|+...
T Consensus         2 gKValITGas~GIG~aia~~l-a~~Ga~V~i~~r~~~~   38 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRL-GKEGLRVFVCARGEEG   38 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            67777777654 999999999 6899999999998643

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.66  E-value=0.11  Score=38.99  Aligned_cols=71  Identities=23%  Similarity=0.146  Sum_probs=44.2

Q ss_pred             CCCEEEEEc-CChHHHHHHHHHhccCCcE-EEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhh-----
Q 026023          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE-----  236 (244)
Q Consensus       164 ~g~tvgIvG-~G~IG~~vA~~la~afG~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~-----  236 (244)
                      .+++|.|.| .|.+|...++. ||.+|++ |++++.+.... ......       .+...+--...+++.+.+++     
T Consensus        30 ~~etVLI~gaaGgVG~~aiQl-ak~~Ga~~vi~~~~~~e~~-~~l~~~-------~gad~vi~~~~~~~~~~~~~~~~~G  100 (187)
T d1vj1a2          30 SNQTMVVSGAAGACGSLAGQI-GHLLGCSRVVGICGTQEKC-LFLTSE-------LGFDAAVNYKTGNVAEQLREACPGG  100 (187)
T ss_dssp             SCCEEEESSTTSTTGGGHHHH-HHHTTCSEEEEEESSHHHH-HHHHHH-------SCCSEEEETTSSCHHHHHHHHCTTC
T ss_pred             CCCEEEEECCCchhhHHHHHH-HHHcCCcceecccchHHHH-hhhhhc-------ccceEEeeccchhHHHHHHHHhccC
Confidence            347999999 59999999999 5999996 55556654332 211111       12222212234577777777     


Q ss_pred             CCEEEEe
Q 026023          237 ADVVCTL  243 (244)
Q Consensus       237 sD~Vvl~  243 (244)
                      .|+|+=+
T Consensus       101 vDvv~D~  107 (187)
T d1vj1a2         101 VDVYFDN  107 (187)
T ss_dssp             EEEEEES
T ss_pred             ceEEEec
Confidence            7877643

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=90.60  E-value=0.16  Score=36.58  Aligned_cols=39  Identities=8%  Similarity=0.002  Sum_probs=33.5

Q ss_pred             ccCCCEEEEE--cCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVI--GAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIv--G~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ...++.+.|+  |-|.||-++|..| ..+|++|..+.+.+..
T Consensus        36 ~~~~~~vvi~d~ggg~ig~e~A~~l-a~~G~~Vtlv~~~~~~   76 (156)
T d1djqa2          36 KKIGKRVVILNADTYFMAPSLAEKL-ATAGHEVTIVSGVHLA   76 (156)
T ss_dssp             SCCCSEEEEEECCCSSHHHHHHHHH-HHTTCEEEEEESSCTT
T ss_pred             cccCCceEEEecCCChHHHHHHHHH-HHcCCeEEEEecCCcc
Confidence            3567788887  8899999999998 7999999999987653

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=90.60  E-value=0.08  Score=41.86  Aligned_cols=38  Identities=18%  Similarity=0.131  Sum_probs=33.4

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       163 l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      |.||++.|-|. +.||+++|+.| ..-|++|...+|+...
T Consensus         4 L~gK~alVTGas~GIG~aia~~l-a~~Ga~V~~~~r~~~~   42 (251)
T d1zk4a1           4 LDGKVAIITGGTLGIGLAIATKF-VEEGAKVMITGRHSDV   42 (251)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            89999999985 45999999999 6899999999997643

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=90.59  E-value=0.14  Score=40.32  Aligned_cols=38  Identities=29%  Similarity=0.271  Sum_probs=33.9

Q ss_pred             cCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          163 LKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       163 l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      |.||++.|-| .+.||+++|+.| ..-|++|...+++.+.
T Consensus         3 l~GK~alITGas~GIG~aia~~l-a~~G~~V~~~~~~~~~   41 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAF-AREGALVALCDLRPEG   41 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSTTH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            7999999998 567999999999 6999999999998654

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.55  E-value=0.15  Score=39.72  Aligned_cols=37  Identities=19%  Similarity=0.270  Sum_probs=32.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .||+|.|.|. |.||+++|+.| ..-|++|...++...+
T Consensus         1 egK~vlITGas~GIG~a~a~~l-~~~G~~V~~~~~~~~~   38 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAF-RARNWWVASIDVVENE   38 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHH-HTTTCEEEEEESSCCT
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeCCccc
Confidence            4899999998 55999999999 7899999999887644

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.45  E-value=0.12  Score=40.77  Aligned_cols=38  Identities=24%  Similarity=0.269  Sum_probs=33.0

Q ss_pred             cCCCEEEEEcCC-hHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          163 LKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       163 l~g~tvgIvG~G-~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +.||++.|-|.+ .||+++|+.| ..-|++|+..+|+...
T Consensus         1 i~GKvalITGas~GIG~aia~~l-a~~Ga~V~i~~r~~~~   39 (254)
T d2gdza1           1 VNGKVALVTGAAQGIGRAFAEAL-LLKGAKVALVDWNLEA   39 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            469999999875 4999999999 6899999999998654

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.38  E-value=0.092  Score=41.33  Aligned_cols=38  Identities=24%  Similarity=0.267  Sum_probs=33.0

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       163 l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      |.||++.|-|. +.||+++|+.| ..-|++|+..+|+...
T Consensus         4 l~gK~alITGas~GIG~aia~~l-a~~G~~Vi~~~r~~~~   42 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAF-AREGAKVIATDINESK   42 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHH-HHcCCEEEEEeCCHHH
Confidence            89999988865 67999999999 6889999999998643

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=90.23  E-value=0.072  Score=39.46  Aligned_cols=37  Identities=14%  Similarity=0.041  Sum_probs=31.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .|++|.|.|. |.+|..+++. |+.+|++|++.+++..+
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iql-ak~~Ga~Vi~~~~s~~k   65 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQW-AKALGAKLIGTVGTAQK   65 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHH-HHHHTCEEEEEESSHHH
T ss_pred             CCCEEEEEccccccchHHHHH-HHHhCCeEeecccchHH
Confidence            5789999955 5599999999 59999999999998765

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=90.04  E-value=0.23  Score=40.47  Aligned_cols=79  Identities=15%  Similarity=0.099  Sum_probs=48.2

Q ss_pred             cCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCC--CCccccccCCHHHHhhhCCE
Q 026023          163 LKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE--QPVTWKRASSMDEVLREADV  239 (244)
Q Consensus       163 l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~ell~~sD~  239 (244)
                      -.||+|.|.| .|-||+.+++.| ..-|.+|++..|+.... +.....+.........  .........++++++..+|+
T Consensus         9 ~~gk~VlVTG~sGfIGs~l~~~L-l~~G~~V~~~vR~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~   86 (342)
T d1y1pa1           9 PEGSLVLVTGANGFVASHVVEQL-LEHGYKVRGTARSASKL-ANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAG   86 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSHHHH-HHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSE
T ss_pred             CCcCEEEEECCCCHHHHHHHHHH-HHCcCEEEEEeCCchhH-HHHHHhhhccccccccEEEeccccchhhhhhhcccchh
Confidence            4699999997 477999999998 67899999998875431 1111100000000000  00122334567788999998


Q ss_pred             EEEe
Q 026023          240 VCTL  243 (244)
Q Consensus       240 Vvl~  243 (244)
                      |+.+
T Consensus        87 v~~~   90 (342)
T d1y1pa1          87 VAHI   90 (342)
T ss_dssp             EEEC
T ss_pred             hhhh
Confidence            8743

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.00  E-value=0.31  Score=36.21  Aligned_cols=71  Identities=14%  Similarity=0.243  Sum_probs=41.1

Q ss_pred             EEEEEc-CChHHHHHHHHHhccC-CcEEEEEcCC--cc---hHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023          167 TVGVIG-AGRIGSAYARMMVEGF-KMNLIYYDLY--QA---TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (244)
Q Consensus       167 tvgIvG-~G~IG~~vA~~la~af-G~~V~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~  239 (244)
                      +|+|+| .|-.|+++.|+| ... ..++.+...+  .+   +...+....    .  .+..........+.+.....+|+
T Consensus         3 kVaIiGATGyvG~eLlrlL-~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~dv   75 (179)
T d2g17a1           3 NTLIVGASGYAGAELVSYV-NRHPHMTITALTVSAQSNDAGKLISDLHPQ----L--KGIVDLPLQPMSDVRDFSADVDV   75 (179)
T ss_dssp             EEEEETTTSHHHHHHHHHH-HHCTTEEEEEEEEETTCTTTTCBHHHHCGG----G--TTTCCCBEEEESCGGGTCTTCCE
T ss_pred             EEEEECcccHHHHHHHHHH-HhCCCCceEeeEeecccccccccccccccc----c--ccccccccccchhhhhhhcccce
Confidence            799999 899999999999 566 6777654321  11   111111000    0  11112222233456667788999


Q ss_pred             EEEeC
Q 026023          240 VCTLC  244 (244)
Q Consensus       240 Vvl~~  244 (244)
                      +++++
T Consensus        76 vf~al   80 (179)
T d2g17a1          76 VFLAT   80 (179)
T ss_dssp             EEECS
T ss_pred             eeccc
Confidence            98864

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=89.83  E-value=0.19  Score=38.78  Aligned_cols=39  Identities=23%  Similarity=0.253  Sum_probs=34.7

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      ..-.+++|.|||.|..|-..|..| +..|++|..+++..+
T Consensus        45 ~~~~~k~VvIIGaGpAGl~aA~~l-~~~G~~v~l~E~~~~   83 (233)
T d1djqa3          45 QTKNKDSVLIVGAGPSGSEAARVL-MESGYTVHLTDTAEK   83 (233)
T ss_dssp             CCSSCCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSSS
T ss_pred             cccCCceEEEEcccHHHHHHHHHH-HHhccceeeEeeccc
Confidence            345889999999999999999998 789999999998664

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=89.80  E-value=0.14  Score=38.40  Aligned_cols=37  Identities=14%  Similarity=0.115  Sum_probs=31.6

Q ss_pred             CCCEEEEE--cCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          164 KGQTVGVI--GAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIv--G~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .|+++.|+  |.|.+|+...+. ||.+|++|++..++...
T Consensus        28 ~g~~vli~~ga~g~vG~~aiql-Ak~~Ga~vI~~v~~~~~   66 (189)
T d1gu7a2          28 PGKDWFIQNGGTSAVGKYASQI-GKLLNFNSISVIRDRPN   66 (189)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHH-HHHHTCEEEEEECCCTT
T ss_pred             CCCEEEEEeCCCchHHHHHHHH-HhhcCCeEEEEEecccc
Confidence            57889998  689999999999 59999999998876543

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=89.52  E-value=0.32  Score=35.17  Aligned_cols=34  Identities=32%  Similarity=0.504  Sum_probs=23.2

Q ss_pred             CEEEEEcC-ChHHHHHHHHH-hc-c-CCcEEEEEcCCc
Q 026023          166 QTVGVIGA-GRIGSAYARMM-VE-G-FKMNLIYYDLYQ  199 (244)
Q Consensus       166 ~tvgIvG~-G~IG~~vA~~l-a~-a-fG~~V~~~~~~~  199 (244)
                      |+|||+|. |..|+++.++| .+ . .-.++.++..+.
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~   39 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQ   39 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSS
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccc
Confidence            47999997 99999999754 22 2 333566565543

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=89.52  E-value=0.24  Score=40.66  Aligned_cols=33  Identities=15%  Similarity=0.092  Sum_probs=28.3

Q ss_pred             CEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (244)
Q Consensus       166 ~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~  199 (244)
                      |.|.|.| .|-||+.+++.| ...|.+|++++|..
T Consensus         2 K~vLITGatGfiGs~lv~~L-l~~g~~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFL-LEKGYEVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHH-HHCcCEEEEEECCC
Confidence            6777888 899999999999 78899999999964

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=89.41  E-value=0.11  Score=39.61  Aligned_cols=35  Identities=23%  Similarity=0.510  Sum_probs=23.9

Q ss_pred             EEEEEcCChHHHHHHHHHh-ccC---CcEEEEEc-CCcch
Q 026023          167 TVGVIGAGRIGSAYARMMV-EGF---KMNLIYYD-LYQAT  201 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la-~af---G~~V~~~~-~~~~~  201 (244)
                      +|||=|||+||+.+.|.+. +++   ..+|.+.+ +....
T Consensus         4 kigINGFGRIGR~vlR~~~~~~~~~~~i~iv~Ind~~~~~   43 (190)
T d1k3ta1           4 KVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDA   43 (190)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCBTTTEEEEEEEESCCCH
T ss_pred             EEEEECCChHHHHHHHHHHHcCCCCCCeEEEEEecCCCCH
Confidence            7999999999999998641 122   35666644 44443

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=89.33  E-value=0.15  Score=40.33  Aligned_cols=36  Identities=19%  Similarity=0.294  Sum_probs=32.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      ..|+|.|||.|-.|-..|..| ...|.+|+.++++.+
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L-~~~G~~V~vlE~~~~   64 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVL-AGAGHQVTVLEASER   64 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHH-HHHTCEEEEECSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHH-HHCCCCEEEEeCCCC
Confidence            557999999999999999999 577999999998653

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.10  E-value=0.17  Score=38.26  Aligned_cols=36  Identities=17%  Similarity=0.060  Sum_probs=29.5

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHhccCCc--EEEEEcCCcch
Q 026023          165 GQTVGVIGA-GRIGSAYARMMVEGFKM--NLIYYDLYQAT  201 (244)
Q Consensus       165 g~tvgIvG~-G~IG~~vA~~la~afG~--~V~~~~~~~~~  201 (244)
                      -|+|.|.|. |-||+.+++.| ..-|-  +|+...|++..
T Consensus         2 ~KkIlItGatG~iG~~lv~~L-~~~~~~~~v~~~~r~~~~   40 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRI-LSEPTLAKVIAPARKALA   40 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHH-HHCTTCCEEECCBSSCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHH-HhCCCeEEEEEEeCCchh
Confidence            379999988 99999999997 67776  78888776543

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.09  E-value=0.2  Score=38.28  Aligned_cols=34  Identities=18%  Similarity=0.294  Sum_probs=29.5

Q ss_pred             EEEEEcCChHHHHHHHHHhc-cCCcEEEEEcCCcc
Q 026023          167 TVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQA  200 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~-afG~~V~~~~~~~~  200 (244)
                      +|.|||.|..|-..|+.|++ .+|.+|..|++.+.
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            79999999999999987643 58999999999864

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=89.05  E-value=0.24  Score=38.10  Aligned_cols=36  Identities=17%  Similarity=0.253  Sum_probs=31.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      ..++|.|||.|-.|-..|..| .-.|.+|..+++++.
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L-~~~G~~v~v~Er~~~   38 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALML-RDAGVDVDVYERSPQ   38 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHH-HHCCCCEEEEeCCCC
Confidence            457899999999999999999 567999999998653

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.78  E-value=0.34  Score=37.35  Aligned_cols=42  Identities=14%  Similarity=0.192  Sum_probs=34.6

Q ss_pred             ccccCCCEEEEEcCChHHHHHHHHHhcc-------------------CCc-EEEEEcCCcch
Q 026023          160 GNLLKGQTVGVIGAGRIGSAYARMMVEG-------------------FKM-NLIYYDLYQAT  201 (244)
Q Consensus       160 ~~~l~g~tvgIvG~G~IG~~vA~~la~a-------------------fG~-~V~~~~~~~~~  201 (244)
                      ...+.|++|.|||-|+.+--+|+.+.+.                   .|+ +|..+.|+...
T Consensus        34 ~~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~~   95 (225)
T d1cjca1          34 APDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPL   95 (225)
T ss_dssp             CCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGG
T ss_pred             CccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcChH
Confidence            3568899999999999999999997432                   577 69999988754

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=88.68  E-value=0.23  Score=35.44  Aligned_cols=63  Identities=13%  Similarity=0.129  Sum_probs=47.8

Q ss_pred             CCCEEEEEcC----ChHHHHHHHHHhccCCcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCE
Q 026023          164 KGQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (244)
Q Consensus       164 ~g~tvgIvG~----G~IG~~vA~~la~afG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~  239 (244)
                      .-|++.|||.    ++.|..+.+.| +.+|.++..+.+++....                 -.+...+.++.++-..-|+
T Consensus        12 ~pksIAVVGaS~~~~k~g~~v~~~L-~~~g~~~~~v~~~~~~~~-----------------i~g~~~~~~l~~i~~~iD~   73 (136)
T d1iuka_          12 QAKTIAVLGAHKDPSRPAHYVPRYL-REQGYRVLPVNPRFQGEE-----------------LFGEEAVASLLDLKEPVDI   73 (136)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHH-HHTTCEEEEECGGGTTSE-----------------ETTEECBSSGGGCCSCCSE
T ss_pred             CCCeEEEEeecCCCCCchHHHHHHH-hcCCCCceEEEeccccce-----------------eeceecccchhhccCCCce
Confidence            4679999997    78999999998 999999999998764310                 1122334678888788898


Q ss_pred             EEEeC
Q 026023          240 VCTLC  244 (244)
Q Consensus       240 Vvl~~  244 (244)
                      +++.+
T Consensus        74 v~v~~   78 (136)
T d1iuka_          74 LDVFR   78 (136)
T ss_dssp             EEECS
T ss_pred             EEEec
Confidence            88753

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=88.50  E-value=1.2  Score=33.04  Aligned_cols=69  Identities=19%  Similarity=0.296  Sum_probs=42.0

Q ss_pred             EEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcch--HHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEEe
Q 026023          167 TVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT--RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCTL  243 (244)
Q Consensus       167 tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl~  243 (244)
                      +|||+| .|-.|+++.++|++-=..++.++..+...  ...+...       .. .... .....+.+++..++|+|+++
T Consensus         3 kVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p-------~~-~~~~-~~~~~~~~~~~~~~dvvf~a   73 (176)
T d1vkna1           3 RAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFP-------ST-LENS-ILSEFDPEKVSKNCDVLFTA   73 (176)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCG-------GG-CCCC-BCBCCCHHHHHHHCSEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCc-------hh-hccc-cccccCHhHhccccceEEEc
Confidence            799998 59999999999954345677666443322  1111110       00 0111 12335778888999999986


Q ss_pred             C
Q 026023          244 C  244 (244)
Q Consensus       244 ~  244 (244)
                      +
T Consensus        74 ~   74 (176)
T d1vkna1          74 L   74 (176)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=88.41  E-value=0.3  Score=38.38  Aligned_cols=35  Identities=31%  Similarity=0.270  Sum_probs=27.6

Q ss_pred             CEEEEEcCC-hHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          166 QTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       166 ~tvgIvG~G-~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      |++.|-|.+ .||+++|+.| ..-|++|...+|+...
T Consensus         2 KValITGas~GIG~aia~~l-a~~Ga~V~~~~r~~~~   37 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRL-VKDGFAVAIADYNDAT   37 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CEEEEcCCccHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            344566665 5999999999 5889999999998643

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.32  E-value=0.21  Score=40.57  Aligned_cols=38  Identities=32%  Similarity=0.349  Sum_probs=33.3

Q ss_pred             cccCCCEEEEEcCCh-HHHHHHHHHhccCCcEEEEEcCCc
Q 026023          161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQ  199 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~-IG~~vA~~la~afG~~V~~~~~~~  199 (244)
                      ..|.||++.|-|.++ ||+++|+.| ..-|++|+..++..
T Consensus         3 m~l~gKvalITGas~GIG~aiA~~l-a~~Ga~Vvi~d~~~   41 (302)
T d1gz6a_           3 LRFDGRVVLVTGAGGGLGRAYALAF-AERGALVVVNDLGG   41 (302)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEECCCB
T ss_pred             cCcCCCEEEEeCCCCHHHHHHHHHH-HHcCCEEEEEeCCc
Confidence            358999999998766 999999999 69999999998764

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=88.10  E-value=0.42  Score=34.90  Aligned_cols=38  Identities=26%  Similarity=0.277  Sum_probs=32.3

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcch
Q 026023          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (244)
Q Consensus       163 l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~  201 (244)
                      -.|.+|.|+|.|.+|...+..+ +.+|. +|+++++++..
T Consensus        27 k~g~~VlI~G~Gg~g~~~~~~~-~~~g~~~Vi~~~~~~~r   65 (175)
T d1cdoa2          27 EPGSTCAVFGLGAVGLAAVMGC-HSAGAKRIIAVDLNPDK   65 (175)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCGGG
T ss_pred             CCCCEEEEEecCCccchHHHHH-HHHhhchheeecchHHH
Confidence            3678999999999999999996 66666 79999988754

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=88.03  E-value=0.53  Score=36.48  Aligned_cols=95  Identities=18%  Similarity=0.195  Sum_probs=59.0

Q ss_pred             hHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcch
Q 026023          123 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (244)
Q Consensus       123 vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~~  201 (244)
                      +|--+++-+|+..|-.                     +..|..+++.++|.|.-|--+|+++ ...+. ++..+|+..--
T Consensus         5 TaaV~LAgll~a~~~~---------------------g~~l~d~riv~~GAGsAg~gia~~l-~~~~~~~i~~~D~~GLi   62 (222)
T d1vl6a1           5 TAVVVSAAFLNALKLT---------------------EKKIEEVKVVVNGIGAAGYNIVKFL-LDLGVKNVVAVDRKGIL   62 (222)
T ss_dssp             HHHHHHHHHHHHHHHH---------------------TCCTTTCEEEEECCSHHHHHHHHHH-HHHTCCEEEEEETTEEC
T ss_pred             HHHHHHHHHHHHHHHh---------------------CCChhhcEEEEEChHHHHHHHHHHH-HHhcccceEeecceeEE
Confidence            4555677777766543                     3468999999999999999999998 77787 68899987310


Q ss_pred             ---HHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          202 ---RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       202 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                         ......+.+-....+... .  .....++.+.+..+|++..
T Consensus        63 ~~~r~~~~~~~~~~~~~~~~~-~--~~~~~~l~~~l~g~~~~~g  103 (222)
T d1vl6a1          63 NENDPETCLNEYHLEIARITN-P--ERLSGDLETALEGADFFIG  103 (222)
T ss_dssp             CTTSGGGCSSHHHHHHHHTSC-T--TCCCSCHHHHHTTCSEEEE
T ss_pred             EcCcccccccHHHHHHHhhhc-c--hhhhcchHhhccCcceecc
Confidence               000000001011111111 1  1123589999999998764

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=88.00  E-value=0.29  Score=39.68  Aligned_cols=37  Identities=19%  Similarity=0.254  Sum_probs=32.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +.|+|.|||.|-.|-..|..| .--|.+|+.+.++.+-
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L-~k~G~~V~viEk~~~i   37 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQL-AEKGHQVHIIDQRDHI   37 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHH-HTTTCEEEEEESSSSS
T ss_pred             CCCEEEEECCcHHHHHHHHHH-HhCCCCEEEEECCCCC
Confidence            368999999999999999999 5679999999998754

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=87.94  E-value=0.24  Score=35.01  Aligned_cols=32  Identities=22%  Similarity=0.463  Sum_probs=25.7

Q ss_pred             EEEEEcC-ChHHHHHHHHHhccCCcEEE-EEcCCc
Q 026023          167 TVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQ  199 (244)
Q Consensus       167 tvgIvG~-G~IG~~vA~~la~afG~~V~-~~~~~~  199 (244)
                      +|||+|+ |+.|+++++.+ ..-|+++. .+++..
T Consensus         2 ki~i~G~~GrMG~~i~~~~-~~~~~~l~~~id~~~   35 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVF-SEKGHELVLKVDVNG   35 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHH-HHTTCEEEEEEETTE
T ss_pred             EEEEECCCCHHHHHHHHHH-hcCCCeEEEEECCCc
Confidence            6999996 99999999996 78898765 445443

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=87.92  E-value=0.46  Score=33.18  Aligned_cols=39  Identities=18%  Similarity=0.228  Sum_probs=35.2

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      .--+||+|.|+|.|+.+-.-|..| ..+.-+|+.+.|+..
T Consensus        23 ~~~~~k~V~VvGgGdsA~e~A~~L-~~~a~~V~li~r~~~   61 (126)
T d1trba2          23 FFYRNQKVAVIGGGNTAVEEALYL-SNIASEVHLIHRRDG   61 (126)
T ss_dssp             GGGTTSEEEEECSSHHHHHHHHHH-TTTSSEEEEECSSSS
T ss_pred             HHhCCCEEEEECCCHHHHHHHHHH-hhcCCcEEEEeeccc
Confidence            345899999999999999999999 789999999999864

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=87.57  E-value=0.32  Score=37.83  Aligned_cols=32  Identities=22%  Similarity=0.475  Sum_probs=29.5

Q ss_pred             EEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023          167 TVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ  199 (244)
Q Consensus       167 tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~  199 (244)
                      +|.|.|. |-||+.+++.| +.-|.+|++.+|+.
T Consensus         3 KIlItGasGfiG~~l~~~L-~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQL-KGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHH-TTSSEEEEEECTTT
T ss_pred             EEEEECCCCHHHHHHHHHH-HhCCCEEEEeechh
Confidence            6889996 99999999999 89999999999975

>d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=87.39  E-value=0.52  Score=38.27  Aligned_cols=73  Identities=19%  Similarity=0.368  Sum_probs=49.2

Q ss_pred             ccCCCEEEEEcC---ChHHHHHHHHHhccCC-cEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhC
Q 026023          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (244)
Q Consensus       162 ~l~g~tvgIvG~---G~IG~~vA~~la~afG-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~s  237 (244)
                      .+.|++|.++|-   +++....+..+ ..|| +++..+.|..-...++..+.    .+.   ....+....++++.++.+
T Consensus       151 ~l~~~~i~~vGD~~~~~v~~S~~~~~-~~~~~~~~~i~~P~~~~~~~~~~~~----~~~---~~~~~~~~~d~~~a~~~a  222 (310)
T d1tuga1         151 RLDNLHVAMVGDLKYGRTVHSLTQAL-AKFDGNRFYFIAPDALAMPQYILDM----LDE---KGIAWSLHSSIEEVMAEV  222 (310)
T ss_dssp             CSSSCEEEEESCTTTCHHHHHHHHHH-TTSSSCEEEEECCGGGCCCHHHHHH----HHT---TTCCEEEESCGGGTTTTC
T ss_pred             CcccceEEEEeccccCcchHHHHHHH-HhccCceEEEeCCcccccchhcccc----ccc---ccceeeeeechhhhccCC
Confidence            389999999997   78899999987 6774 78988888543222222111    111   122234457899999999


Q ss_pred             CEEEE
Q 026023          238 DVVCT  242 (244)
Q Consensus       238 D~Vvl  242 (244)
                      |+|..
T Consensus       223 Dvvy~  227 (310)
T d1tuga1         223 DILYM  227 (310)
T ss_dssp             SEEEE
T ss_pred             ceeee
Confidence            99864

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=87.31  E-value=0.21  Score=34.37  Aligned_cols=35  Identities=17%  Similarity=0.248  Sum_probs=28.0

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCC---cEEEEEcCCcc
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFK---MNLIYYDLYQA  200 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG---~~V~~~~~~~~  200 (244)
                      .+++.|+|.|.||-++|..+ ..+|   .+|..+.+..+
T Consensus        20 p~~v~ivGgG~ig~E~A~~l-~~l~~~~~~Vtli~~~~~   57 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIF-NAYKPKDGQVTLCYRGEM   57 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHH-HHHCCTTCEEEEEESSSS
T ss_pred             CCeEEEECCcHHHHHHHHHh-hhcccCCcEEEEEeccch
Confidence            47899999999999999776 5665   46888877653

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.31  E-value=0.21  Score=40.91  Aligned_cols=37  Identities=22%  Similarity=0.243  Sum_probs=32.3

Q ss_pred             CCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .+.+|.|.| .|-||+.+++.| ..-|.+|+++|+....
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L-~~~g~~V~~~d~~~~~   51 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRL-KHEGHYVIASDWKKNE   51 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSCCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCcCEEEEEeCCCcc
Confidence            778899987 899999999998 7889999999876544

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=87.29  E-value=0.17  Score=36.93  Aligned_cols=34  Identities=15%  Similarity=0.116  Sum_probs=27.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCcE--EEEEcCC
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN--LIYYDLY  198 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~~--V~~~~~~  198 (244)
                      .+++|.|||-|.+|-++|..| +.+|.+  |+...+.
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l-~~~g~~v~v~~~~~~   37 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGL-RASGWEGNIRLVGDA   37 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHH-HHTTCCSEEEEECSC
T ss_pred             CCCCEEEECCcHHHHHHHHHH-HHcCCceEEEEecCc
Confidence            467899999999999999998 888876  4444443

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=87.13  E-value=0.22  Score=39.31  Aligned_cols=39  Identities=13%  Similarity=0.079  Sum_probs=33.8

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .|.||++.|-|. +.||+++|+.| ..-|++|+..+|+...
T Consensus         2 rl~gKvalVTGas~GIG~aia~~l-a~~Ga~V~~~~r~~~~   41 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLF-AREGAKVTITGRHAER   41 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            389999999876 67999999999 6999999999998643

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.04  E-value=0.47  Score=36.26  Aligned_cols=42  Identities=19%  Similarity=0.256  Sum_probs=34.0

Q ss_pred             ccccCCCEEEEEcCChHHHHHHHHHhc-------------------cCCc-EEEEEcCCcch
Q 026023          160 GNLLKGQTVGVIGAGRIGSAYARMMVE-------------------GFKM-NLIYYDLYQAT  201 (244)
Q Consensus       160 ~~~l~g~tvgIvG~G~IG~~vA~~la~-------------------afG~-~V~~~~~~~~~  201 (244)
                      ...+.|++|.|||-|+.+--+|+.+++                   ..|+ +|..+.|+...
T Consensus        34 ~~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~~   95 (216)
T d1lqta1          34 SPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPL   95 (216)
T ss_dssp             CCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGG
T ss_pred             CccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECChH
Confidence            356789999999999999999998632                   5777 58888887654

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=87.02  E-value=0.3  Score=37.10  Aligned_cols=34  Identities=21%  Similarity=0.192  Sum_probs=30.7

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~  199 (244)
                      -++|.|||.|-.|-..|..| ..-|.+|..+++..
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L-~~~G~~V~vier~~   39 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALIL-ARKGYSVHILARDL   39 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSC
T ss_pred             CCcEEEECccHHHHHHHHHH-HHCCCCEEEEeCCC
Confidence            45899999999999999999 68899999999854

>d1wd7a_ c.113.1.1 (A:) Probable uroporphyrinogen-III synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: HemD-like
superfamily: HemD-like
family: HemD-like
domain: Probable uroporphyrinogen-III synthase
species: Thermus thermophilus [TaxId: 274]

Probab=86.98  E-value=3.4  Score=31.78  Aligned_cols=143  Identities=10%  Similarity=-0.025  Sum_probs=80.1

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEeccCCC--C--CCH-HHHHHHhcCCccEEEeccCccccHHHHHHhhccCC---
Q 026023           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKT--I--LSV-EDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGG---   87 (244)
Q Consensus        16 ~~ilv~~~~~~~~~~~~l~~~~~~v~~~~~~~~--~--~~~-~~~~~~~~~~ad~ii~~~~~~~~~~~l~~~p~l~~---   87 (244)
                      ++|.++..-..+++.+.+++.|.+....+.-+.  .  .+. +.+...+. ++|.++..+. +=-..+++.+.++|.   
T Consensus         2 ~r~~~~~~r~~e~~~~lle~~G~~p~~~P~i~i~~~p~~~~~~~~~~~~~-~~d~vvfTS~-ngV~~~~~~l~~~~~~~~   79 (254)
T d1wd7a_           2 VRVAYAGLRRKEAFKALAEKLGFTPLLFPVQATEKVPVPEYRDQVRALAQ-GVDLFLATTG-VGVRDLLEAGKALGLDLE   79 (254)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCEEEECCCBCSSCEECTTHHHHHHHHHT-CCSEEEECCH-HHHHHHHHHHHHTTCCCH
T ss_pred             ceeeechhhhHHHHHHHHHHCCCcEEEecceeeeeCCchhhHHHHHhhcc-CCCEEEEECH-HHHHHHHHHHHHcCccHh
Confidence            678888877777788889999998876553221  1  122 23333444 5897665421 111233344433321   


Q ss_pred             -----cEEEEcccCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCCCcccccc
Q 026023           88 -----KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNL  162 (244)
Q Consensus        88 -----k~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~  162 (244)
                           .-|...|.+.    ..++.+.|+...-.+..++...++.                       |.           
T Consensus        80 ~~l~~~~i~aVG~~T----a~aL~~~G~~~~~~~~~~s~~l~~~-----------------------~~-----------  121 (254)
T d1wd7a_          80 GPLAKAFRLARGAKA----ARALKEAGLPPHAVGDGTSKSLLPL-----------------------LP-----------  121 (254)
T ss_dssp             HHHHTSEEEESSHHH----HHHHHHTTCCCSEECSSSGGGGGGG-----------------------CC-----------
T ss_pred             HHhcCCeEEEECHHH----HHHHHHcCCCCccCCchhHHHHHHH-----------------------Hh-----------
Confidence                 2233444433    4567778887665555443332221                       00           


Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (244)
Q Consensus       163 l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~  199 (244)
                      -..+.+.+.+.|.-...+.+.| +..|++|..+.-|.
T Consensus       122 ~~~~~~l~~~~~~~~~~L~~~L-~~~G~~v~~v~~Y~  157 (254)
T d1wd7a_         122 QGRGVAALQLYGKPLPLLENAL-AERGYRVLPLMPYR  157 (254)
T ss_dssp             CCCEEEEEECSSSCCHHHHHHH-HHTTEEEEEECSEE
T ss_pred             cCCCEEEEecccCCcHHHHHHH-HhccCcceEEEEee
Confidence            0123466666666667889998 89999876665553

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.90  E-value=0.33  Score=34.29  Aligned_cols=36  Identities=19%  Similarity=0.266  Sum_probs=29.8

Q ss_pred             CCEEEEEcCChHHHHHHHHHh---ccCCcEEEEEcCCcc
Q 026023          165 GQTVGVIGAGRIGSAYARMMV---EGFKMNLIYYDLYQA  200 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la---~afG~~V~~~~~~~~  200 (244)
                      ++++.|+|-|-||-++|.-|+   +.+|.+|..+.+...
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~   75 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKG   75 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEeccccc
Confidence            579999999999999987653   468999999988654

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.46  E-value=0.21  Score=36.88  Aligned_cols=31  Identities=35%  Similarity=0.587  Sum_probs=22.9

Q ss_pred             EEEEEcCChHHHHHHHHHhc---cCCcEEEEEcC
Q 026023          167 TVGVIGAGRIGSAYARMMVE---GFKMNLIYYDL  197 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~---afG~~V~~~~~  197 (244)
                      .|+|+|+|.+|+.+++.+.+   .+..+|.+...
T Consensus         6 ~I~l~G~G~VG~~l~~~l~~~~~~l~~~v~~i~~   39 (168)
T d1ebfa1           6 NVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAE   39 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEEC
T ss_pred             EEEEEeCCHHHHHHHHHHHHhHHHhhhheEEEEE
Confidence            68999999999999998731   24456666543

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.16  E-value=0.26  Score=38.71  Aligned_cols=40  Identities=15%  Similarity=0.073  Sum_probs=33.0

Q ss_pred             ccCCCEEEEEcCC-hHHHHHHHHHhc--cCCcEEEEEcCCcch
Q 026023          162 LLKGQTVGVIGAG-RIGSAYARMMVE--GFKMNLIYYDLYQAT  201 (244)
Q Consensus       162 ~l~g~tvgIvG~G-~IG~~vA~~la~--afG~~V~~~~~~~~~  201 (244)
                      .|.||++.|-|.+ .||+++|+.||+  .=|++|+..+|+...
T Consensus         3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~   45 (259)
T d1oaaa_           3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESM   45 (259)
T ss_dssp             CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHH
Confidence            4889988888875 699999999865  359999999998643

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=85.68  E-value=0.23  Score=36.64  Aligned_cols=38  Identities=16%  Similarity=0.183  Sum_probs=33.0

Q ss_pred             cCCCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          163 LKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       163 l~g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      ..|.+|.|-| .|.+|....++ ||.+|++|++..++..+
T Consensus        22 ~~~~~VLV~gaaGgVG~~avQl-Ak~~Ga~Viat~~s~~k   60 (167)
T d1tt7a2          22 PEKGSVLVTGATGGVGGIAVSM-LNKRGYDVVASTGNREA   60 (167)
T ss_dssp             GGGCCEEEESTTSHHHHHHHHH-HHHHTCCEEEEESSSST
T ss_pred             CCCCEEEEeCCcchHHHHHHHH-HHHcCCceEEEecCHHH
Confidence            3566899998 59999999999 59999999999998654

>d1jr2a_ c.113.1.1 (A:) Uroporphyrinogen III synthase (U3S, HemD) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HemD-like
superfamily: HemD-like
family: HemD-like
domain: Uroporphyrinogen III synthase (U3S, HemD)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.11  E-value=6.4  Score=29.91  Aligned_cols=143  Identities=10%  Similarity=0.018  Sum_probs=78.1

Q ss_pred             EEEEeCCCCc----hHHHHHHHhCCCeEEEeccCC-CCCCHHHHHHHhcC--CccEEEeccCccccHHHHHHhhccCC--
Q 026023           17 RVVSTKPMPG----TRWINLLIEQDCRVEICTQKK-TILSVEDIIALIGD--KCDGVIGQLTEDWGETLFAALSRAGG--   87 (244)
Q Consensus        17 ~ilv~~~~~~----~~~~~~l~~~~~~v~~~~~~~-~~~~~~~~~~~~~~--~ad~ii~~~~~~~~~~~l~~~p~l~~--   87 (244)
                      .||++.+-.+    +++.+.|++.|+++...+.-+ ...+.+++.+.+.+  ++|.++..+..-+ ..+.+.+...+.  
T Consensus         3 ~il~trp~~~~~~~d~~~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~l~~~~~~d~iifTS~~aV-~~~~~~l~~~~~~~   81 (260)
T d1jr2a_           3 VLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLIFTSPRAV-EAAELCLEQNNKTE   81 (260)
T ss_dssp             EEEEESSCCCBTTBCHHHHHHHTTTCEEEEEECEEEEECCHHHHHHHHTCGGGCSEEEECCHHHH-HHHHHHHHHTTCHH
T ss_pred             EEEecCCCCCcccccHHHHHHHhCCCcEEEECCEEEeeCChHHHHHHHhChhhccEEEEeCchHH-HHHHHHHHhhCcch
Confidence            4578877543    357888999998887665322 12345555555432  4676665432111 111111111100  


Q ss_pred             ------------cEEEEcccCCCccChHHHhhCCcEEEecCCCCCcchHHHHHHHHHHHHhChHHHHHHHHcCCCCCCCC
Q 026023           88 ------------KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP  155 (244)
Q Consensus        88 ------------k~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~  155 (244)
                                  +-+.+.|-+.    ..++++.|+.+.-.+.    ..++-.+..+..                      
T Consensus        82 ~~~~~~~~~~~~~~i~aVG~~T----a~~l~~~G~~~~~~~~----~~s~~l~~~~~~----------------------  131 (260)
T d1jr2a_          82 VWERSLKEKWNAKSVYVVGNAT----ASLVSKIGLDTEGETC----GNAEKLAEYICS----------------------  131 (260)
T ss_dssp             HHHHHTHHHHHHSEEEECSHHH----HHHHHHTTCCCSCCSC----SSHHHHHHHHHT----------------------
T ss_pred             hhhhhhhhhhccCeEEEEcHHH----HHHHHHcCCCcccccc----ccHHHHHHHHhh----------------------
Confidence                        2244444443    4667788987543332    334443332211                      


Q ss_pred             CcccccccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEc
Q 026023          156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD  196 (244)
Q Consensus       156 ~~~~~~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~  196 (244)
                           ....++++.++..+.....+.+.| +..|++|.-+.
T Consensus       132 -----~~~~~~~il~~~g~~~~~~L~~~L-~~~g~~v~~~~  166 (260)
T d1jr2a_         132 -----RESSALPLLFPCGNLKREILPKAL-KDKGIAMESIT  166 (260)
T ss_dssp             -----SCCCSSCEEEEESCGGGCCHHHHH-HTTTCCEEEEE
T ss_pred             -----hcccCceEEEeeccccchHHHHHH-HhcCCcceEEE
Confidence                 124567888888888888999998 89998655433

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=84.83  E-value=0.32  Score=36.18  Aligned_cols=37  Identities=19%  Similarity=0.308  Sum_probs=30.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       164 ~g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .+.+|.|.|. |.+|....++ ||.+|++|++..+++..
T Consensus        31 ~~~~vlV~gasGGVG~~aiQl-Ak~~Ga~Via~~~~~~k   68 (177)
T d1o89a2          31 QDGEIVVTGASGGVGSTAVAL-LHKLGYQVVAVSGREST   68 (177)
T ss_dssp             GGCEEEESSTTSHHHHHHHHH-HHHTTCCEEEEESCGGG
T ss_pred             CCCcEEEEEccccchHHHHHH-HHHcCCCeEEEecchhH
Confidence            4456777654 9999999999 59999999999998765

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=84.30  E-value=0.67  Score=33.06  Aligned_cols=31  Identities=19%  Similarity=0.257  Sum_probs=26.7

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~  199 (244)
                      +|.|||-|.+|-++|..| +. +.+|..+++.+
T Consensus         2 rVvIIGgG~~G~e~A~~l-~~-~~~Vtvv~~~~   32 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQL-SQ-TYEVTVIDKEP   32 (167)
T ss_dssp             EEEEECCSHHHHHHHHHH-TT-TSEEEEECSSS
T ss_pred             eEEEECCcHHHHHHHHHH-Hc-CCCEEEEeccc
Confidence            799999999999999998 44 67899888754

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=84.19  E-value=0.41  Score=36.55  Aligned_cols=36  Identities=19%  Similarity=0.256  Sum_probs=30.4

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       165 g~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      +|++.|-|. +.||+++|+.| ..-|++|+..+++...
T Consensus         1 DK~alITGas~GIG~aiA~~l-a~~Ga~V~i~~~~~~~   37 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALAL-KARGYRVVVLDLRREG   37 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHH-HHHTCEEEEEESSCCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCccc
Confidence            477888876 67999999999 6899999999987643

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=83.96  E-value=0.6  Score=37.65  Aligned_cols=34  Identities=18%  Similarity=0.296  Sum_probs=28.4

Q ss_pred             CEEEEEcCChHHHHHHHHHhcc--CCcEEEEEcCCcc
Q 026023          166 QTVGVIGAGRIGSAYARMMVEG--FKMNLIYYDLYQA  200 (244)
Q Consensus       166 ~tvgIvG~G~IG~~vA~~la~a--fG~~V~~~~~~~~  200 (244)
                      |+|.|||.|..|-..|..| +.  .+.+|..+.++..
T Consensus         5 KrVaIIGaG~sGl~~A~~L-~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKAL-LAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HTTTCCSEEEEECSSSS
T ss_pred             CeEEEECcCHHHHHHHHHH-HHhCCCCCEEEEECCCC
Confidence            6899999999999999876 44  4469999999854

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=83.94  E-value=0.47  Score=36.67  Aligned_cols=34  Identities=21%  Similarity=0.342  Sum_probs=28.0

Q ss_pred             CEEEEEcC-ChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       166 ~tvgIvG~-G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      |+|.|-|. +.||+++|+.| ..-|++|+..+++..
T Consensus         2 kVvlITGas~GIG~aiA~~l-a~~Ga~V~~~~~~~~   36 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVL-EAAGHQIVGIDIRDA   36 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSSS
T ss_pred             CEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECChH
Confidence            46677775 56999999999 688999999998754

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=83.57  E-value=1.1  Score=32.15  Aligned_cols=67  Identities=27%  Similarity=0.347  Sum_probs=35.7

Q ss_pred             EEEEEc-CChHHHHHHHHHhc--cC-CcEEEEEcCCcchHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEEE
Q 026023          167 TVGVIG-AGRIGSAYARMMVE--GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVCT  242 (244)
Q Consensus       167 tvgIvG-~G~IG~~vA~~la~--af-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vvl  242 (244)
                      +|||+| .|-.|+++.++|..  -| ..++..++.+....         +... ........... .-.+.+.++|+|++
T Consensus         2 KVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~g---------k~~~-~~~~~~~~~~~-~~~~~~~~~DvvF~   70 (147)
T d1mb4a1           2 RVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGV---------PAPN-FGKDAGMLHDA-FDIESLKQLDAVIT   70 (147)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSS---------BCCC-SSSCCCBCEET-TCHHHHTTCSEEEE
T ss_pred             EEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccc---------cccc-cCCcceeeecc-cchhhhccccEEEE
Confidence            699997 59999999987622  12 24555544332210         0000 01111111111 22356799999998


Q ss_pred             eC
Q 026023          243 LC  244 (244)
Q Consensus       243 ~~  244 (244)
                      ++
T Consensus        71 al   72 (147)
T d1mb4a1          71 CQ   72 (147)
T ss_dssp             CS
T ss_pred             ec
Confidence            74

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=83.15  E-value=0.46  Score=36.36  Aligned_cols=33  Identities=21%  Similarity=0.290  Sum_probs=29.6

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      +|.|||.|-.|-..|..| .--|.+|+.+.++.+
T Consensus         2 ~V~IIGaG~aGL~aA~~L-~~~G~~V~vlE~~~~   34 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHL-RSRGTDAVLLESSAR   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHH-HTTTCCEEEECSSSS
T ss_pred             eEEEECCCHHHHHHHHHH-HhCCCCEEEEecCCC
Confidence            699999999999999999 578999999998653

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.13  E-value=0.25  Score=42.20  Aligned_cols=37  Identities=27%  Similarity=0.319  Sum_probs=31.9

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCc
Q 026023          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ  199 (244)
Q Consensus       162 ~l~g~tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~  199 (244)
                      .|.+.+|.|+|+|.+|.++++.| -..|. ++..+|...
T Consensus        34 ~l~~~kVlvvG~GglG~ei~k~L-~~~Gvg~i~lvD~D~   71 (426)
T d1yovb1          34 LLDTCKVLVIGAGGLGCELLKNL-ALSGFRQIHVIDMDT   71 (426)
T ss_dssp             HHHHCCEEEECSSTTHHHHHHHH-HTTTCCCEEEECCCB
T ss_pred             HHhcCeEEEECCCHHHHHHHHHH-HHcCCCeEEEEECCC
Confidence            36788999999999999999999 58888 688888743

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.07  E-value=1.1  Score=31.45  Aligned_cols=37  Identities=16%  Similarity=0.300  Sum_probs=34.0

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       163 l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      -+||+|.|+|-|+-+-.-|-.| ..+--+|+.+.|+.+
T Consensus        32 frgk~V~VvGgGdsA~e~A~~L-~~~a~~V~li~r~~~   68 (130)
T d1vdca2          32 FRNKPLAVIGGGDSAMEEANFL-TKYGSKVYIIHRRDA   68 (130)
T ss_dssp             GTTSEEEEECCSHHHHHHHHHH-TTTSSEEEEECSSSS
T ss_pred             hCCCEEEEEcCchHHHHHHHHH-hCCCCcEEEEEeccc
Confidence            4799999999999999999999 799999999988754

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=82.64  E-value=0.58  Score=36.71  Aligned_cols=36  Identities=19%  Similarity=0.217  Sum_probs=30.7

Q ss_pred             CCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       165 g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      ..=|.|||.|.-|-..|..||+..|.+|..+++.+.
T Consensus        33 e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~   68 (278)
T d1rp0a1          33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS   68 (278)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCC
Confidence            345999999999999999875557999999998764

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=82.48  E-value=0.39  Score=35.45  Aligned_cols=35  Identities=14%  Similarity=0.181  Sum_probs=30.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~  199 (244)
                      +++.|.|||-|.+|-.-|..+ .-+|++|+.+++..
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~-ar~g~~v~iie~~~   38 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYA-ARANLQPVLITGME   38 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHH-HTTTCCCEEECCSS
T ss_pred             CCCcEEEECCCHHHHHHHHHH-HHcCCceEEEEeec
Confidence            467899999999999999996 78999999998754

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=82.13  E-value=0.59  Score=34.98  Aligned_cols=30  Identities=17%  Similarity=0.076  Sum_probs=27.8

Q ss_pred             EEEEcCChHHHHHHHHHhccCCcEEEEEcCC
Q 026023          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (244)
Q Consensus       168 vgIvG~G~IG~~vA~~la~afG~~V~~~~~~  198 (244)
                      |.|||.|..|-..|..+ ..+|.+|..+++.
T Consensus         5 vvVIG~G~aG~~aA~~a-~~~G~kV~iiE~~   34 (217)
T d1gesa1           5 YIAIGGGSGGIASINRA-AMYGQKCALIEAK   34 (217)
T ss_dssp             EEEECCSHHHHHHHHHH-HTTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHH-HHCCCEEEEEecc
Confidence            78999999999999996 7999999999875

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=82.08  E-value=1.4  Score=32.57  Aligned_cols=72  Identities=13%  Similarity=0.172  Sum_probs=40.1

Q ss_pred             CCEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcc--hHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhhCCEEE
Q 026023          165 GQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVVC  241 (244)
Q Consensus       165 g~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~sD~Vv  241 (244)
                      ..+|||+| .|-.|+++.++|++-=..++.+...+..  ....+....       ....... ......++.+.++|+++
T Consensus         5 kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~-------~~~~~~~-~~~~~~~~~~~~~Dvvf   76 (183)
T d2cvoa1           5 EVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPH-------LITQDLP-NLVAVKDADFSNVDAVF   76 (183)
T ss_dssp             CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGG-------GTTSCCC-CCBCGGGCCGGGCSEEE
T ss_pred             ccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCcccccccc-------ccccccc-cchhhhhhhhcccceee
Confidence            34799998 5999999999994433556665532222  111111110       0111111 11233556778999999


Q ss_pred             EeC
Q 026023          242 TLC  244 (244)
Q Consensus       242 l~~  244 (244)
                      +++
T Consensus        77 ~al   79 (183)
T d2cvoa1          77 CCL   79 (183)
T ss_dssp             ECC
T ss_pred             ecc
Confidence            864

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=81.63  E-value=0.84  Score=32.91  Aligned_cols=37  Identities=16%  Similarity=-0.045  Sum_probs=29.7

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHhccCCcE-EEEEcCCcc
Q 026023          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQA  200 (244)
Q Consensus       163 l~g~tvgIvG~G~IG~~vA~~la~afG~~-V~~~~~~~~  200 (244)
                      -.+++|.|||-|++|-..|..+ .-+|++ |+.+.|+..
T Consensus        43 ~~~~kVvVIGGGdtA~D~A~~a-~r~GA~~V~vi~rr~~   80 (153)
T d1gtea3          43 SIRGAVIVLGAGDTAFDCATSA-LRCGARRVFLVFRKGF   80 (153)
T ss_dssp             CCCSEEEEECSSHHHHHHHHHH-HHTTCSEEEEECSSCG
T ss_pred             cCCCEEEEECCChhHHHHHHHH-HHcCCcceeEEEeCCh
Confidence            3567899999999999999986 788885 767766543

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.63  E-value=0.62  Score=34.41  Aligned_cols=32  Identities=16%  Similarity=0.130  Sum_probs=28.9

Q ss_pred             EEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       168 vgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      |.|||.|-.|-..|.+|| -.|.+|+.++++..
T Consensus         8 viViGaG~~Gl~~A~~La-~~G~~V~vlE~~~~   39 (297)
T d2bcgg1           8 VIVLGTGITECILSGLLS-VDGKKVLHIDKQDH   39 (297)
T ss_dssp             EEEECCSHHHHHHHHHHH-HTTCCEEEECSSSS
T ss_pred             EEEECcCHHHHHHHHHHH-HCCCCEEEEcCCCC
Confidence            899999999999999994 67999999999753

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.63  E-value=0.81  Score=35.38  Aligned_cols=36  Identities=31%  Similarity=0.436  Sum_probs=31.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       164 ~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      +..+|.|||.|--|-..|..| ...|.+|+.+..+.+
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L-~~~G~~V~VlEa~~r   39 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQL-QSFGMDVTLLEARDR   39 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHH-HHTTCEEEEECSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHH-HhCCCCEEEEeCCCC
Confidence            345799999999999999999 678999999987653

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=81.36  E-value=1.5  Score=33.81  Aligned_cols=34  Identities=26%  Similarity=0.290  Sum_probs=28.0

Q ss_pred             CCEEEEEc-CChHHHHHHHHHhccCCc-EEEEEcCCc
Q 026023          165 GQTVGVIG-AGRIGSAYARMMVEGFKM-NLIYYDLYQ  199 (244)
Q Consensus       165 g~tvgIvG-~G~IG~~vA~~la~afG~-~V~~~~~~~  199 (244)
                      +.|+.|.| .|.||+++|+.| ..-|+ +|+.+.|+.
T Consensus         9 ~gt~lVTGgs~GIG~a~a~~l-a~~Ga~~vvl~~R~~   44 (259)
T d2fr1a1           9 TGTVLVTGGTGGVGGQIARWL-ARRGAPHLLLVSRSG   44 (259)
T ss_dssp             CSEEEEETTTSHHHHHHHHHH-HHHTCSEEEEEESSG
T ss_pred             cCEEEEECCCcHHHHHHHHHH-HHCCCCEEEEEeCCc
Confidence            35899998 688999999999 57888 588888874

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.30  E-value=0.46  Score=37.23  Aligned_cols=34  Identities=18%  Similarity=0.334  Sum_probs=30.9

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCcEEEEEcCCcch
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~~~  201 (244)
                      .|.|||.|-.|-.+|..| +-.|.+|..+++++..
T Consensus         4 ~V~IvGaGp~Gl~~A~~L-~~~G~~v~vlE~~~~~   37 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLL-HKAGIDNVILERQTPD   37 (292)
T ss_dssp             SEEEECCSHHHHHHHHHH-HHHTCCEEEECSSCHH
T ss_pred             CEEEECcCHHHHHHHHHH-HHCCCCEEEEeCCCCC
Confidence            599999999999999999 7889999999998643

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.00  E-value=0.77  Score=36.36  Aligned_cols=34  Identities=15%  Similarity=0.135  Sum_probs=29.1

Q ss_pred             CEEEEEc-CChHHHHHHHHHhccCCcEEEEEcCCcc
Q 026023          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (244)
Q Consensus       166 ~tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~~~  200 (244)
                      |+|.|.| .|-||+.+++.| ..-|.+|++++|...
T Consensus         1 k~vLItG~tGfiG~~l~~~L-l~~g~~V~~~~r~~~   35 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLL-LEKGYRVHGLVARRS   35 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECCCS
T ss_pred             CEEEEECCCCHHHHHHHHHH-HHCcCEEEEEECCCC
Confidence            5788886 588999999998 678999999998653

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.93  E-value=1.1  Score=36.02  Aligned_cols=33  Identities=27%  Similarity=0.204  Sum_probs=26.9

Q ss_pred             CEEEEE-cCChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023          166 QTVGVI-GAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (244)
Q Consensus       166 ~tvgIv-G~G~IG~~vA~~la~afG~~V~~~~~~~  199 (244)
                      |+|.|. |.|-||+.+++.| ..-|.+|.++|+..
T Consensus         2 K~ILVTGatGfIG~~lv~~L-l~~g~~V~~~d~~~   35 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVEL-IENGYDCVVADNLS   35 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECCS
T ss_pred             CEEEEeCCCcHHHHHHHHHH-HHCcCeEEEEECCC
Confidence            566666 5689999999998 68899999997643

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=80.71  E-value=0.55  Score=37.90  Aligned_cols=31  Identities=29%  Similarity=0.262  Sum_probs=26.3

Q ss_pred             EEEEEc-CChHHHHHHHHHhccCCcEEEEEcCC
Q 026023          167 TVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLY  198 (244)
Q Consensus       167 tvgIvG-~G~IG~~vA~~la~afG~~V~~~~~~  198 (244)
                      +|.|.| .|-||+.+++.| ...|.+|+++|+.
T Consensus         2 KiLItG~tGfIG~~l~~~L-~~~g~~V~~~d~~   33 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQL-LQNGHDVIILDNL   33 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHH-HHTTCEEEEEECC
T ss_pred             EEEEECCCCHHHHHHHHHH-HHCcCEEEEEECC
Confidence            466774 699999999999 7889999999864

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=80.51  E-value=0.61  Score=34.64  Aligned_cols=33  Identities=24%  Similarity=0.342  Sum_probs=28.8

Q ss_pred             EEEEEcCChHHHHHHHHHhccCCc-EEEEEcCCcc
Q 026023          167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA  200 (244)
Q Consensus       167 tvgIvG~G~IG~~vA~~la~afG~-~V~~~~~~~~  200 (244)
                      +|.|||.|-.|-..|..| +-.|. +|..+.++.+
T Consensus         2 ~V~IIGaG~aGL~aA~~L-~~~G~~~V~vlE~~~~   35 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRL-SEAGITDLLILEATDH   35 (347)
T ss_dssp             CEEEECCBHHHHHHHHHH-HHTTCCCEEEECSSSS
T ss_pred             CEEEECCcHHHHHHHHHH-HhCCCCcEEEEECCCC
Confidence            489999999999999999 67798 5999998753

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=80.44  E-value=0.69  Score=35.95  Aligned_cols=27  Identities=15%  Similarity=0.060  Sum_probs=21.5

Q ss_pred             cCChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023          172 GAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (244)
Q Consensus       172 G~G~IG~~vA~~la~afG~~V~~~~~~~  199 (244)
                      |.+.||+++|+.| ..-|++|+..+++.
T Consensus         9 as~GIG~a~a~~l-a~~Ga~V~i~~~~~   35 (244)
T d1edoa_           9 ASRGIGKAIALSL-GKAGCKVLVNYARS   35 (244)
T ss_dssp             CSSHHHHHHHHHH-HHTTCEEEEEESSC
T ss_pred             CCcHHHHHHHHHH-HHCCCEEEEEeCCC
Confidence            4567999999999 68999998755443

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=80.12  E-value=0.69  Score=34.73  Aligned_cols=38  Identities=26%  Similarity=0.362  Sum_probs=30.5

Q ss_pred             cccCCCEEEEEcCChHHHHHHHHHhccCCcEEEEEcCCc
Q 026023          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (244)
Q Consensus       161 ~~l~g~tvgIvG~G~IG~~vA~~la~afG~~V~~~~~~~  199 (244)
                      .++.||+|.|||.|..|-.+|..+ ..-+.++....+++
T Consensus        28 ~~~~gK~V~VvG~G~Sa~dia~~~-~~~~~~~~~~~~~~   65 (235)
T d1w4xa2          28 VDFSGQRVGVIGTGSSGIQVSPQI-AKQAAELFVFQRTP   65 (235)
T ss_dssp             CCCBTCEEEEECCSHHHHHHHHHH-HHHBSEEEEEESSC
T ss_pred             CCCCCCEEEEECCCccHHHHHHHH-Hhhhcccccccccc
Confidence            468999999999999999999997 56667766655543